Query 000654
Match_columns 1371
No_of_seqs 643 out of 4583
Neff 8.3
Searched_HMMs 46136
Date Mon Apr 1 21:32:59 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0974 WD-repeat protein WDR6 100.0 3E-63 6.6E-68 595.7 57.3 959 16-1360 6-967 (967)
2 KOG0318 WD40 repeat stress pro 100.0 1.1E-41 2.4E-46 381.2 58.8 528 4-670 39-602 (603)
3 KOG0319 WD40-repeat-containing 100.0 5.4E-42 1.2E-46 397.8 48.4 579 23-904 25-617 (775)
4 KOG0319 WD40-repeat-containing 100.0 1.9E-39 4.1E-44 376.7 49.0 543 71-908 25-579 (775)
5 KOG0318 WD40 repeat stress pro 100.0 1.3E-35 2.7E-40 332.8 61.0 562 82-906 28-602 (603)
6 KOG0306 WD40-repeat-containing 100.0 5.4E-37 1.2E-41 355.5 49.6 559 89-907 35-665 (888)
7 KOG0306 WD40-repeat-containing 100.0 2.6E-36 5.7E-41 349.7 50.2 522 4-670 43-622 (888)
8 KOG0291 WD40-repeat-containing 100.0 1.7E-34 3.7E-39 334.9 64.3 558 4-678 35-620 (893)
9 KOG0271 Notchless-like WD40 re 100.0 3.2E-37 6.9E-42 333.1 29.2 319 16-444 114-476 (480)
10 KOG0271 Notchless-like WD40 re 100.0 9.2E-37 2E-41 329.5 29.2 327 58-500 109-479 (480)
11 KOG0291 WD40-repeat-containing 100.0 1E-31 2.2E-36 311.9 55.1 468 16-612 95-614 (893)
12 KOG1063 RNA polymerase II elon 100.0 1.2E-32 2.5E-37 317.9 45.6 671 35-831 25-763 (764)
13 KOG0272 U4/U6 small nuclear ri 100.0 6.7E-35 1.5E-39 320.0 22.8 278 17-376 175-458 (459)
14 KOG0286 G-protein beta subunit 100.0 9.2E-31 2E-35 275.4 33.3 281 16-376 54-343 (343)
15 KOG2106 Uncharacterized conser 100.0 1.4E-28 3E-33 274.5 50.2 535 90-905 78-625 (626)
16 KOG0315 G-protein beta subunit 100.0 2.9E-30 6.4E-35 265.6 29.8 280 1-357 17-309 (311)
17 KOG0276 Vesicle coat complex C 100.0 8.3E-29 1.8E-33 282.2 42.4 460 16-611 12-491 (794)
18 KOG2106 Uncharacterized conser 100.0 1E-27 2.2E-32 267.7 49.8 505 16-669 103-625 (626)
19 KOG1408 WD40 repeat protein [F 100.0 9.7E-29 2.1E-33 283.8 42.6 525 4-611 58-714 (1080)
20 KOG0279 G protein beta subunit 100.0 2.5E-29 5.5E-34 263.4 32.9 296 122-553 5-313 (315)
21 KOG0272 U4/U6 small nuclear ri 100.0 9.5E-31 2.1E-35 287.5 22.5 271 65-440 175-451 (459)
22 KOG0292 Vesicle coat complex C 100.0 2E-27 4.2E-32 279.5 48.6 309 17-379 9-322 (1202)
23 KOG0315 G-protein beta subunit 100.0 8.5E-29 1.8E-33 254.9 29.6 282 36-388 11-299 (311)
24 KOG0273 Beta-transducin family 100.0 8.1E-29 1.8E-33 275.3 31.5 316 16-446 177-521 (524)
25 KOG0279 G protein beta subunit 100.0 2.6E-28 5.7E-33 255.8 31.7 284 16-378 14-313 (315)
26 KOG0276 Vesicle coat complex C 100.0 4.8E-27 1E-31 267.9 40.9 426 66-674 14-456 (794)
27 KOG0295 WD40 repeat-containing 100.0 1.6E-28 3.4E-33 265.5 24.8 279 16-377 107-405 (406)
28 KOG1063 RNA polymerase II elon 100.0 2.4E-26 5.3E-31 265.9 42.0 574 2-670 77-763 (764)
29 KOG0645 WD40 repeat protein [G 100.0 7.6E-27 1.6E-31 243.8 33.3 295 122-502 4-311 (312)
30 KOG0286 G-protein beta subunit 100.0 9E-27 2E-31 245.4 33.8 295 120-500 43-343 (343)
31 KOG0263 Transcription initiati 100.0 2.2E-28 4.8E-33 288.7 24.2 267 18-378 379-649 (707)
32 KOG1539 WD repeat protein [Gen 100.0 8.5E-25 1.8E-29 257.8 53.1 534 3-668 55-646 (910)
33 KOG1539 WD repeat protein [Gen 100.0 8E-25 1.7E-29 258.0 52.7 468 34-673 46-526 (910)
34 KOG0281 Beta-TrCP (transducin 100.0 4.3E-29 9.3E-34 266.5 15.0 259 1-339 214-481 (499)
35 KOG1408 WD40 repeat protein [F 100.0 3.4E-25 7.3E-30 255.0 46.2 611 89-908 50-715 (1080)
36 KOG0285 Pleiotropic regulator 100.0 4.9E-27 1.1E-31 252.4 26.1 294 120-503 139-440 (460)
37 KOG0645 WD40 repeat protein [G 100.0 1.3E-25 2.9E-30 234.6 32.7 282 16-378 13-311 (312)
38 KOG0285 Pleiotropic regulator 100.0 2.4E-26 5.2E-31 247.2 26.7 280 16-378 150-439 (460)
39 KOG0273 Beta-transducin family 99.9 1E-25 2.2E-30 250.8 31.1 291 1-378 198-523 (524)
40 KOG0296 Angio-associated migra 99.9 3.7E-25 8E-30 239.8 34.1 340 124-610 56-398 (399)
41 KOG0292 Vesicle coat complex C 99.9 1.1E-24 2.5E-29 256.4 40.9 317 65-505 9-351 (1202)
42 KOG0284 Polyadenylation factor 99.9 2.6E-27 5.6E-32 259.2 16.1 277 16-377 95-379 (464)
43 KOG0296 Angio-associated migra 99.9 2.6E-25 5.6E-30 241.0 30.3 302 1-377 83-397 (399)
44 KOG0265 U5 snRNP-specific prot 99.9 2.2E-25 4.7E-30 236.1 27.7 281 16-375 46-335 (338)
45 KOG0281 Beta-TrCP (transducin 99.9 4.7E-27 1E-31 251.1 13.8 267 17-378 197-477 (499)
46 cd00200 WD40 WD40 domain, foun 99.9 2.1E-24 4.5E-29 245.5 36.7 277 16-376 8-289 (289)
47 KOG2048 WD40 repeat protein [G 99.9 3.4E-23 7.5E-28 240.2 46.0 478 2-611 45-549 (691)
48 KOG0266 WD40 repeat-containing 99.9 5.9E-25 1.3E-29 268.7 32.4 280 16-378 158-454 (456)
49 KOG2048 WD40 repeat protein [G 99.9 2.7E-22 5.8E-27 232.9 50.9 508 17-672 25-550 (691)
50 KOG0295 WD40 repeat-containing 99.9 2.3E-25 5E-30 241.2 22.4 270 60-437 104-394 (406)
51 PLN00181 protein SPA1-RELATED; 99.9 5.8E-24 1.3E-28 279.1 40.2 285 16-377 482-792 (793)
52 KOG0263 Transcription initiati 99.9 8.5E-25 1.8E-29 258.6 24.9 247 2-335 398-648 (707)
53 KOG0316 Conserved WD40 repeat- 99.9 6.1E-24 1.3E-28 217.4 26.1 273 16-376 16-297 (307)
54 KOG0284 Polyadenylation factor 99.9 3.1E-25 6.7E-30 243.0 16.8 272 66-441 97-372 (464)
55 KOG0293 WD40 repeat-containing 99.9 3.3E-24 7.2E-29 234.6 24.2 279 16-378 223-513 (519)
56 KOG0277 Peroxisomal targeting 99.9 5E-24 1.1E-28 220.6 23.3 282 21-377 12-308 (311)
57 KOG0266 WD40 repeat-containing 99.9 5.2E-23 1.1E-27 251.7 33.6 280 59-438 153-441 (456)
58 KOG0293 WD40 repeat-containing 99.9 1.7E-23 3.6E-28 229.1 24.3 294 247-611 215-514 (519)
59 PLN00181 protein SPA1-RELATED; 99.9 4.3E-22 9.2E-27 261.5 42.5 319 43-446 457-791 (793)
60 KOG0265 U5 snRNP-specific prot 99.9 7E-23 1.5E-27 217.2 27.9 279 60-443 43-333 (338)
61 KOG0274 Cdc4 and related F-box 99.9 4.4E-23 9.5E-28 251.1 30.2 270 16-378 207-482 (537)
62 KOG0316 Conserved WD40 repeat- 99.9 7.5E-23 1.6E-27 209.5 26.2 251 122-451 7-260 (307)
63 cd00200 WD40 WD40 domain, foun 99.9 5.3E-22 1.1E-26 225.7 36.4 282 126-500 3-289 (289)
64 KOG0313 Microtubule binding pr 99.9 6.9E-23 1.5E-27 223.1 27.1 282 16-377 104-417 (423)
65 KOG0313 Microtubule binding pr 99.9 8.9E-23 1.9E-27 222.3 24.8 273 1-335 122-417 (423)
66 KOG0282 mRNA splicing factor [ 99.9 5.2E-23 1.1E-27 230.6 16.8 287 55-444 205-501 (503)
67 KOG0282 mRNA splicing factor [ 99.9 1.1E-22 2.4E-27 227.9 18.5 257 1-334 234-503 (503)
68 KOG0277 Peroxisomal targeting 99.9 9.8E-22 2.1E-26 203.7 22.5 254 95-438 36-298 (311)
69 KOG0274 Cdc4 and related F-box 99.9 3.1E-21 6.6E-26 235.1 29.4 259 89-449 220-483 (537)
70 KOG0300 WD40 repeat-containing 99.9 4.4E-21 9.5E-26 203.2 23.7 295 16-378 147-476 (481)
71 KOG0310 Conserved WD40 repeat- 99.9 5.5E-21 1.2E-25 215.0 25.8 280 16-377 25-308 (487)
72 KOG0288 WD40 repeat protein Ti 99.9 4.6E-22 1E-26 218.7 16.4 279 16-376 174-459 (459)
73 KOG0308 Conserved WD40 repeat- 99.9 1.3E-21 2.9E-26 225.4 21.0 269 35-378 37-327 (735)
74 KOG0305 Anaphase promoting com 99.9 1E-20 2.2E-25 221.9 27.9 266 32-377 185-460 (484)
75 KOG0643 Translation initiation 99.9 5.7E-21 1.2E-25 199.4 22.6 279 16-378 9-317 (327)
76 KOG0772 Uncharacterized conser 99.9 6.6E-21 1.4E-25 214.0 24.4 309 121-500 156-485 (641)
77 KOG0289 mRNA splicing factor [ 99.9 1.2E-20 2.7E-25 208.4 26.1 279 18-377 220-505 (506)
78 KOG0643 Translation initiation 99.9 4E-20 8.6E-25 193.1 27.8 299 60-444 6-313 (327)
79 KOG0301 Phospholipase A2-activ 99.9 1E-20 2.2E-25 219.9 25.8 284 122-505 4-291 (745)
80 KOG0283 WD40 repeat-containing 99.9 1.7E-20 3.7E-25 224.5 26.2 315 124-555 258-578 (712)
81 KOG0275 Conserved WD40 repeat- 99.9 2.4E-21 5.2E-26 205.5 16.0 283 130-500 211-507 (508)
82 KOG0772 Uncharacterized conser 99.9 1.5E-20 3.3E-25 211.2 22.4 296 16-377 166-486 (641)
83 KOG0310 Conserved WD40 repeat- 99.9 3.1E-20 6.8E-25 208.9 24.9 290 44-443 9-304 (487)
84 KOG1446 Histone H3 (Lys4) meth 99.9 5.4E-19 1.2E-23 190.2 33.2 280 16-378 13-303 (311)
85 KOG0275 Conserved WD40 repeat- 99.9 4E-21 8.6E-26 203.9 16.2 289 177-551 212-507 (508)
86 KOG0301 Phospholipase A2-activ 99.9 4.6E-20 1E-24 214.5 26.2 280 55-447 5-287 (745)
87 KOG1407 WD40 repeat protein [F 99.9 1.4E-19 3.1E-24 188.6 27.0 269 16-369 19-293 (313)
88 KOG0647 mRNA export protein (c 99.9 6.3E-20 1.4E-24 194.9 24.8 275 16-369 26-315 (347)
89 KOG0299 U3 snoRNP-associated p 99.9 9.4E-20 2E-24 203.5 27.4 291 58-437 136-443 (479)
90 KOG0973 Histone transcription 99.9 1.2E-19 2.7E-24 222.1 29.8 295 16-379 12-356 (942)
91 KOG0278 Serine/threonine kinas 99.9 9.1E-21 2E-25 195.7 16.6 282 60-447 10-296 (334)
92 KOG2096 WD40 repeat protein [G 99.9 1.9E-19 4.2E-24 191.7 26.6 315 6-376 74-400 (420)
93 KOG0268 Sof1-like rRNA process 99.9 6E-21 1.3E-25 206.6 14.9 276 16-378 65-345 (433)
94 KOG0278 Serine/threonine kinas 99.9 2.8E-20 6.1E-25 192.1 19.0 287 127-505 9-300 (334)
95 KOG0641 WD40 repeat protein [G 99.9 2.6E-18 5.6E-23 174.6 32.9 286 17-378 32-349 (350)
96 KOG0641 WD40 repeat protein [G 99.8 2.3E-18 4.9E-23 175.1 32.3 291 64-439 31-339 (350)
97 KOG0973 Histone transcription 99.8 1.5E-19 3.2E-24 221.3 28.5 321 175-555 10-357 (942)
98 PTZ00421 coronin; Provisional 99.8 9.3E-19 2E-23 213.4 35.3 270 16-360 19-315 (493)
99 KOG0288 WD40 repeat protein Ti 99.8 1.4E-20 3E-25 207.2 17.1 203 123-378 166-371 (459)
100 KOG0294 WD40 repeat-containing 99.8 6.7E-19 1.5E-23 188.2 29.2 275 195-555 3-283 (362)
101 KOG0300 WD40 repeat-containing 99.8 3.4E-19 7.5E-24 189.0 25.9 324 122-503 138-477 (481)
102 KOG0283 WD40 repeat-containing 99.8 1.1E-19 2.3E-24 217.7 24.8 268 56-379 258-577 (712)
103 KOG0305 Anaphase promoting com 99.8 3.7E-19 8E-24 208.8 27.4 266 89-450 189-463 (484)
104 KOG0640 mRNA cleavage stimulat 99.8 9E-20 1.9E-24 193.3 20.0 270 125-440 105-417 (430)
105 KOG0268 Sof1-like rRNA process 99.8 4.1E-20 8.9E-25 200.2 17.8 289 247-673 57-348 (433)
106 PTZ00420 coronin; Provisional 99.8 2.6E-18 5.6E-23 210.2 35.4 251 43-360 53-318 (568)
107 KOG0308 Conserved WD40 repeat- 99.8 1.1E-19 2.3E-24 209.9 21.4 242 89-379 38-286 (735)
108 PTZ00421 coronin; Provisional 99.8 2.6E-18 5.7E-23 209.5 34.4 241 16-335 74-330 (493)
109 KOG0294 WD40 repeat-containing 99.8 9.6E-19 2.1E-23 187.0 25.1 235 16-336 42-281 (362)
110 KOG0639 Transducin-like enhanc 99.8 1.7E-19 3.7E-24 201.5 20.2 281 13-377 415-703 (705)
111 KOG0974 WD-repeat protein WDR6 99.8 5.3E-16 1.1E-20 189.3 52.0 181 89-337 101-289 (967)
112 KOG0289 mRNA splicing factor [ 99.8 1E-18 2.2E-23 193.4 26.0 281 133-501 220-505 (506)
113 KOG0640 mRNA cleavage stimulat 99.8 2.1E-19 4.5E-24 190.6 19.6 286 16-377 111-425 (430)
114 KOG0299 U3 snoRNP-associated p 99.8 1.6E-18 3.4E-23 193.9 27.3 256 125-449 135-411 (479)
115 KOG1407 WD40 repeat protein [F 99.8 1.7E-18 3.6E-23 180.7 25.5 273 59-438 15-291 (313)
116 KOG1445 Tumor-specific antigen 99.8 5E-17 1.1E-21 185.8 39.4 224 96-377 54-292 (1012)
117 KOG1036 Mitotic spindle checkp 99.8 2.4E-18 5.2E-23 184.1 26.6 269 17-368 13-294 (323)
118 KOG1332 Vesicle coat complex C 99.8 2.2E-19 4.7E-24 185.5 17.9 251 63-378 10-286 (299)
119 KOG1446 Histone H3 (Lys4) meth 99.8 1.2E-17 2.6E-22 179.9 31.8 289 248-608 6-301 (311)
120 PTZ00420 coronin; Provisional 99.8 5.1E-18 1.1E-22 207.6 33.1 217 96-378 53-293 (568)
121 KOG0639 Transducin-like enhanc 99.8 1.3E-18 2.7E-23 194.7 21.4 272 64-439 418-694 (705)
122 KOG0646 WD40 repeat protein [G 99.8 7.7E-18 1.7E-22 188.8 23.0 275 44-386 18-316 (476)
123 KOG0647 mRNA export protein (c 99.8 3E-17 6.4E-22 174.8 26.2 270 65-437 27-311 (347)
124 KOG0264 Nucleosome remodeling 99.8 8.1E-18 1.8E-22 188.7 21.6 260 15-336 122-404 (422)
125 KOG0646 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 187.6 21.3 256 5-317 62-328 (476)
126 KOG0264 Nucleosome remodeling 99.8 2E-17 4.3E-22 185.7 23.3 241 89-379 138-405 (422)
127 KOG1445 Tumor-specific antigen 99.8 2.1E-16 4.6E-21 180.8 31.5 119 258-380 629-752 (1012)
128 KOG1332 Vesicle coat complex C 99.8 1.6E-17 3.4E-22 171.9 19.8 243 35-339 23-291 (299)
129 KOG4283 Transcription-coupled 99.8 6.6E-17 1.4E-21 170.8 24.2 300 16-377 42-364 (397)
130 KOG1963 WD40 repeat protein [G 99.8 3E-15 6.6E-20 180.2 41.6 477 82-671 26-539 (792)
131 KOG2445 Nuclear pore complex c 99.8 9.1E-17 2E-21 171.4 25.4 262 63-378 12-318 (361)
132 KOG0269 WD40 repeat-containing 99.8 1.1E-17 2.3E-22 197.1 19.5 287 17-378 39-340 (839)
133 KOG2445 Nuclear pore complex c 99.8 2.8E-16 6.1E-21 167.7 28.4 276 16-346 12-332 (361)
134 KOG1036 Mitotic spindle checkp 99.8 2.5E-16 5.5E-21 168.8 27.9 279 255-601 12-295 (323)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.9E-15 4.1E-20 175.3 35.3 270 1-358 8-300 (300)
136 KOG2055 WD40 repeat protein [G 99.7 2.7E-16 5.7E-21 175.9 26.5 286 16-378 212-512 (514)
137 KOG4283 Transcription-coupled 99.7 5.6E-16 1.2E-20 163.9 26.9 232 65-378 43-276 (397)
138 KOG1963 WD40 repeat protein [G 99.7 2.7E-14 5.8E-19 172.1 43.3 482 21-611 20-539 (792)
139 KOG2096 WD40 repeat protein [G 99.7 5.7E-16 1.2E-20 165.5 25.6 299 124-500 78-400 (420)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 5.4E-15 1.2E-19 171.5 35.6 267 36-379 2-280 (300)
141 KOG0269 WD40 repeat-containing 99.7 5.6E-17 1.2E-21 191.1 18.4 286 134-501 41-339 (839)
142 KOG0267 Microtubule severing p 99.7 6.1E-18 1.3E-22 197.5 9.1 243 43-369 13-259 (825)
143 KOG2055 WD40 repeat protein [G 99.7 5.1E-16 1.1E-20 173.7 23.7 280 66-447 214-511 (514)
144 KOG0321 WD40 repeat-containing 99.7 4E-16 8.7E-21 180.3 23.5 304 184-556 55-394 (720)
145 KOG0321 WD40 repeat-containing 99.7 3.7E-16 7.9E-21 180.7 21.7 328 260-673 53-394 (720)
146 KOG1034 Transcriptional repres 99.7 1.4E-15 3E-20 163.8 24.1 323 16-377 37-382 (385)
147 KOG0270 WD40 repeat-containing 99.7 8.7E-16 1.9E-20 171.5 23.3 285 35-377 137-448 (463)
148 KOG0650 WD40 repeat nucleolar 99.7 1.3E-15 2.9E-20 174.6 24.5 293 16-375 399-732 (733)
149 KOG1538 Uncharacterized conser 99.7 4.4E-15 9.5E-20 171.0 28.6 453 67-675 14-491 (1081)
150 KOG1538 Uncharacterized conser 99.7 9.3E-15 2E-19 168.3 30.5 272 19-378 14-293 (1081)
151 KOG0302 Ribosome Assembly prot 99.7 8.3E-16 1.8E-20 168.0 21.0 252 16-330 150-433 (440)
152 KOG0267 Microtubule severing p 99.7 2.4E-17 5.3E-22 192.5 9.5 232 130-441 26-260 (825)
153 KOG1273 WD40 repeat protein [G 99.7 4.9E-15 1.1E-19 158.4 25.7 286 20-377 26-321 (405)
154 KOG0302 Ribosome Assembly prot 99.7 2.2E-15 4.8E-20 164.7 21.7 209 126-378 145-378 (440)
155 KOG4378 Nuclear protein COP1 [ 99.7 2.7E-15 6E-20 168.2 21.8 280 1-365 9-309 (673)
156 KOG1274 WD40 repeat protein [G 99.7 2.2E-14 4.8E-19 172.7 29.4 240 67-379 15-263 (933)
157 KOG1517 Guanine nucleotide bin 99.7 7E-15 1.5E-19 177.7 23.8 312 5-378 1051-1381(1387)
158 KOG4378 Nuclear protein COP1 [ 99.7 6.7E-15 1.5E-19 165.2 21.8 293 36-431 4-305 (673)
159 KOG4328 WD40 protein [Function 99.7 1.2E-14 2.5E-19 162.9 23.6 294 16-378 185-495 (498)
160 KOG1034 Transcriptional repres 99.6 3E-14 6.6E-19 153.5 24.7 308 59-446 32-381 (385)
161 KOG1274 WD40 repeat protein [G 99.6 4.6E-14 9.9E-19 170.0 28.8 282 253-607 10-297 (933)
162 KOG0650 WD40 repeat nucleolar 99.6 4.1E-15 9E-20 170.6 18.4 262 1-333 419-732 (733)
163 KOG1007 WD repeat protein TSSC 99.6 1.3E-14 2.9E-19 153.5 20.6 277 37-378 28-361 (370)
164 KOG4328 WD40 protein [Function 99.6 3E-14 6.4E-19 159.7 23.6 266 49-379 171-451 (498)
165 KOG1273 WD40 repeat protein [G 99.6 6.3E-14 1.4E-18 150.0 24.0 293 135-503 26-323 (405)
166 KOG0307 Vesicle coat complex C 99.6 1.7E-15 3.7E-20 186.7 13.0 289 21-379 10-328 (1049)
167 COG2319 FOG: WD40 repeat [Gene 99.6 2E-11 4.4E-16 146.5 47.8 370 127-611 60-443 (466)
168 KOG0270 WD40 repeat-containing 99.6 2.2E-14 4.7E-19 160.5 19.7 242 21-339 177-453 (463)
169 COG2319 FOG: WD40 repeat [Gene 99.6 2E-11 4.4E-16 146.5 47.2 366 14-503 62-443 (466)
170 KOG2919 Guanine nucleotide-bin 99.6 9.7E-14 2.1E-18 149.1 23.5 260 67-379 51-328 (406)
171 KOG1009 Chromatin assembly com 99.6 4.6E-13 1E-17 148.4 28.7 350 176-612 11-374 (434)
172 KOG1007 WD repeat protein TSSC 99.6 4.9E-14 1.1E-18 149.2 20.1 270 3-335 39-360 (370)
173 KOG2919 Guanine nucleotide-bin 99.6 9.4E-14 2E-18 149.2 22.4 276 21-369 53-361 (406)
174 KOG1188 WD40 repeat protein [G 99.6 1.5E-14 3.2E-19 156.9 15.9 285 36-377 41-345 (376)
175 KOG1188 WD40 repeat protein [G 99.6 5.4E-14 1.2E-18 152.7 19.4 290 194-555 41-348 (376)
176 KOG1524 WD40 repeat-containing 99.6 1.7E-12 3.6E-17 147.4 29.0 270 15-374 12-282 (737)
177 KOG0290 Conserved WD40 repeat- 99.6 1E-12 2.2E-17 139.6 25.1 261 54-379 35-319 (364)
178 KOG0322 G-protein beta subunit 99.5 6.2E-14 1.3E-18 147.0 14.2 296 15-377 12-322 (323)
179 KOG0644 Uncharacterized conser 99.5 2E-14 4.4E-19 170.0 10.4 269 16-377 189-467 (1113)
180 KOG0290 Conserved WD40 repeat- 99.5 5.4E-13 1.2E-17 141.7 20.0 247 16-327 95-357 (364)
181 KOG0303 Actin-binding protein 99.5 1.4E-12 3E-17 143.8 21.8 250 61-379 23-295 (472)
182 KOG1009 Chromatin assembly com 99.5 4.7E-12 1E-16 140.6 24.9 264 60-382 8-376 (434)
183 KOG1524 WD40 repeat-containing 99.5 2.8E-11 6.1E-16 137.6 31.0 263 130-449 12-287 (737)
184 KOG0307 Vesicle coat complex C 99.5 1.3E-13 2.9E-18 170.3 13.0 244 18-335 65-326 (1049)
185 KOG0642 Cell-cycle nuclear pro 99.5 4.9E-13 1.1E-17 153.8 16.6 226 122-378 284-561 (577)
186 KOG4227 WD40 repeat protein [G 99.5 2.8E-12 6E-17 140.3 21.1 208 124-377 48-273 (609)
187 KOG0649 WD40 repeat protein [G 99.5 1.6E-11 3.6E-16 127.4 25.4 284 20-376 13-314 (325)
188 KOG0303 Actin-binding protein 99.5 1.2E-12 2.6E-17 144.3 18.0 123 251-378 76-203 (472)
189 KOG4227 WD40 repeat protein [G 99.5 4.1E-12 8.8E-17 139.0 20.8 290 16-377 55-386 (609)
190 KOG0642 Cell-cycle nuclear pro 99.4 1.3E-12 2.8E-17 150.4 15.4 267 16-347 293-573 (577)
191 KOG1310 WD40 repeat protein [G 99.4 1E-11 2.3E-16 141.4 21.9 171 16-211 49-231 (758)
192 KOG1587 Cytoplasmic dynein int 99.4 1.5E-11 3.4E-16 149.3 25.0 276 44-378 222-516 (555)
193 KOG0649 WD40 repeat protein [G 99.4 8.4E-11 1.8E-15 122.2 26.4 247 67-380 12-276 (325)
194 PRK11028 6-phosphogluconolacto 99.4 3E-10 6.5E-15 134.3 33.6 262 2-335 10-303 (330)
195 KOG1523 Actin-related protein 99.4 3E-11 6.4E-16 130.6 21.9 223 16-289 9-239 (361)
196 KOG1240 Protein kinase contain 99.4 7.1E-11 1.5E-15 146.2 28.0 186 162-379 1034-1226(1431)
197 PRK11028 6-phosphogluconolacto 99.4 4E-10 8.8E-15 133.3 33.7 274 37-378 5-304 (330)
198 KOG0644 Uncharacterized conser 99.4 1.3E-12 2.9E-17 154.9 12.1 286 246-612 180-470 (1113)
199 KOG0322 G-protein beta subunit 99.4 9.6E-12 2.1E-16 130.8 16.6 306 302-669 8-322 (323)
200 KOG1272 WD40-repeat-containing 99.4 1.2E-12 2.6E-17 147.0 9.5 263 21-370 133-401 (545)
201 KOG2110 Uncharacterized conser 99.4 2.6E-10 5.7E-15 125.7 26.6 240 5-288 69-332 (391)
202 KOG1334 WD40 repeat protein [G 99.4 4.5E-12 9.9E-17 143.2 12.8 310 16-378 141-466 (559)
203 KOG1517 Guanine nucleotide bin 99.3 8.4E-11 1.8E-15 143.2 23.5 268 90-441 1078-1373(1387)
204 KOG2110 Uncharacterized conser 99.3 3.3E-09 7.1E-14 117.2 33.3 232 67-380 7-250 (391)
205 KOG1587 Cytoplasmic dynein int 99.3 5.2E-10 1.1E-14 136.1 27.6 282 97-448 222-516 (555)
206 KOG1240 Protein kinase contain 99.3 5.8E-10 1.3E-14 138.3 27.5 269 49-380 1034-1336(1431)
207 KOG1523 Actin-related protein 99.3 8.4E-10 1.8E-14 119.6 23.4 259 181-494 13-281 (361)
208 KOG1334 WD40 repeat protein [G 99.3 3.9E-11 8.5E-16 135.8 13.7 311 121-503 131-467 (559)
209 KOG2394 WD40 protein DMR-N9 [G 99.2 5.2E-10 1.1E-14 128.1 21.6 244 33-358 133-384 (636)
210 KOG2111 Uncharacterized conser 99.2 2.4E-08 5.2E-13 108.6 32.4 293 67-452 7-326 (346)
211 KOG1310 WD40 repeat protein [G 99.2 1.1E-10 2.4E-15 133.2 14.2 228 122-378 40-303 (758)
212 PRK01742 tolB translocation pr 99.2 1.7E-09 3.6E-14 132.4 22.9 215 97-385 184-411 (429)
213 KOG0771 Prolactin regulatory e 99.2 4.5E-10 9.7E-15 126.2 15.3 195 21-287 148-355 (398)
214 KOG2111 Uncharacterized conser 99.1 5.8E-08 1.3E-12 105.6 28.1 237 4-286 75-322 (346)
215 KOG0771 Prolactin regulatory e 99.1 1.1E-09 2.4E-14 123.1 15.1 194 82-335 154-353 (398)
216 PRK01742 tolB translocation pr 99.1 3.6E-09 7.8E-14 129.5 21.2 230 44-359 184-426 (429)
217 KOG2139 WD40 repeat protein [G 99.1 4.2E-08 9.2E-13 107.9 26.7 209 18-286 99-309 (445)
218 KOG3881 Uncharacterized conser 99.1 7.6E-09 1.6E-13 115.1 20.7 267 19-359 57-342 (412)
219 KOG1912 WD40 repeat protein [G 99.1 1.5E-07 3.3E-12 112.1 31.2 162 20-209 18-184 (1062)
220 KOG3881 Uncharacterized conser 99.0 9.7E-09 2.1E-13 114.3 19.7 254 65-379 55-321 (412)
221 KOG4497 Uncharacterized conser 99.0 2.8E-08 6.1E-13 107.8 22.2 341 23-442 14-425 (447)
222 KOG2321 WD40 repeat protein [G 99.0 4.4E-08 9.6E-13 113.3 25.1 280 17-377 51-342 (703)
223 KOG1409 Uncharacterized conser 99.0 1.6E-08 3.5E-13 110.6 20.3 241 17-335 24-269 (404)
224 KOG2139 WD40 repeat protein [G 99.0 1.3E-07 2.9E-12 104.1 27.0 258 134-441 100-367 (445)
225 KOG1272 WD40-repeat-containing 99.0 9.3E-10 2E-14 124.1 9.7 190 135-379 132-324 (545)
226 PF02239 Cytochrom_D1: Cytochr 99.0 2.4E-07 5.3E-12 110.1 30.0 294 2-378 14-347 (369)
227 PF02239 Cytochrom_D1: Cytochr 99.0 1.6E-06 3.5E-11 103.1 35.7 271 35-378 5-302 (369)
228 KOG1354 Serine/threonine prote 99.0 8.5E-08 1.8E-12 104.9 22.4 291 18-377 26-358 (433)
229 KOG2315 Predicted translation 99.0 3.7E-07 8E-12 106.3 28.5 306 17-383 34-395 (566)
230 KOG4497 Uncharacterized conser 98.9 4.5E-07 9.8E-12 98.6 26.7 309 5-371 30-425 (447)
231 KOG2041 WD40 repeat protein [G 98.9 1.3E-06 2.7E-11 103.2 32.2 454 64-612 13-534 (1189)
232 KOG0280 Uncharacterized conser 98.9 2.2E-07 4.8E-12 100.0 23.7 270 44-377 46-332 (339)
233 KOG2394 WD40 protein DMR-N9 [G 98.9 2.3E-08 5E-13 114.9 16.7 212 5-266 145-384 (636)
234 PRK03629 tolB translocation pr 98.9 1.9E-07 4.2E-12 114.1 26.0 201 129-386 195-414 (429)
235 KOG1912 WD40 repeat protein [G 98.9 7.7E-07 1.7E-11 106.2 27.2 246 68-378 18-304 (1062)
236 PRK03629 tolB translocation pr 98.9 4.6E-07 1E-11 110.8 26.3 233 44-358 179-427 (429)
237 KOG2321 WD40 repeat protein [G 98.8 5.9E-07 1.3E-11 104.3 23.0 277 67-449 53-344 (703)
238 PF04762 IKI3: IKI3 family; I 98.8 0.0013 2.8E-08 87.0 57.1 362 131-612 74-458 (928)
239 KOG1354 Serine/threonine prote 98.8 5.1E-07 1.1E-11 99.0 20.8 235 131-378 24-301 (433)
240 PF04762 IKI3: IKI3 family; I 98.8 0.0003 6.5E-09 92.9 50.4 297 18-378 76-456 (928)
241 PRK05137 tolB translocation pr 98.8 1E-06 2.2E-11 108.4 26.0 200 126-380 195-414 (435)
242 PRK04922 tolB translocation pr 98.8 5.7E-07 1.2E-11 110.4 23.5 199 127-381 198-414 (433)
243 PF08662 eIF2A: Eukaryotic tra 98.7 6.1E-07 1.3E-11 97.0 20.0 113 255-383 58-184 (194)
244 PRK04922 tolB translocation pr 98.7 9.5E-07 2.1E-11 108.4 23.9 231 44-358 184-432 (433)
245 PRK02889 tolB translocation pr 98.7 2.8E-06 6.2E-11 104.0 26.5 193 127-370 190-392 (427)
246 TIGR03300 assembly_YfgL outer 98.7 1.5E-05 3.2E-10 96.3 32.3 262 36-378 66-338 (377)
247 PRK05137 tolB translocation pr 98.7 4.9E-06 1.1E-10 102.3 27.8 230 44-358 182-432 (435)
248 TIGR02800 propeller_TolB tol-p 98.7 6.4E-06 1.4E-10 100.9 28.7 197 128-379 185-398 (417)
249 PF08662 eIF2A: Eukaryotic tra 98.7 1.4E-06 3E-11 94.3 19.6 154 137-344 10-187 (194)
250 KOG1409 Uncharacterized conser 98.7 3.4E-07 7.3E-12 100.5 14.6 218 122-379 14-271 (404)
251 PRK02889 tolB translocation pr 98.7 2.6E-06 5.6E-11 104.3 24.0 234 44-359 176-425 (427)
252 COG5354 Uncharacterized protei 98.6 1.3E-05 2.9E-10 92.5 27.6 287 5-380 54-397 (561)
253 PF10282 Lactonase: Lactonase, 98.6 0.00036 7.9E-09 83.0 41.2 285 3-356 12-345 (345)
254 KOG2041 WD40 repeat protein [G 98.6 2.7E-05 5.8E-10 92.4 29.6 174 176-381 12-189 (1189)
255 TIGR02658 TTQ_MADH_Hv methylam 98.6 6E-05 1.3E-09 87.9 32.0 266 44-378 27-330 (352)
256 KOG0280 Uncharacterized conser 98.6 1.1E-05 2.4E-10 87.3 23.6 111 259-378 124-241 (339)
257 KOG0309 Conserved WD40 repeat- 98.6 3E-07 6.4E-12 109.0 11.7 287 16-379 23-340 (1081)
258 TIGR03300 assembly_YfgL outer 98.6 2.9E-05 6.3E-10 93.7 29.3 287 2-375 73-376 (377)
259 KOG2315 Predicted translation 98.5 0.00011 2.3E-09 86.3 30.7 266 37-380 4-304 (566)
260 KOG1064 RAVE (regulator of V-A 98.5 6.2E-07 1.3E-11 115.5 13.1 191 16-290 2207-2402(2439)
261 KOG4547 WD40 repeat-containing 98.5 5.5E-06 1.2E-10 97.6 19.5 187 146-379 4-221 (541)
262 COG2706 3-carboxymuconate cycl 98.5 0.0013 2.7E-08 74.3 36.6 267 90-438 6-309 (346)
263 PF10282 Lactonase: Lactonase, 98.5 0.00074 1.6E-08 80.3 37.5 274 44-378 13-322 (345)
264 KOG3914 WD repeat protein WDR4 98.5 1.1E-06 2.4E-11 99.0 11.9 87 249-344 144-232 (390)
265 KOG4547 WD40 repeat-containing 98.4 3.5E-05 7.6E-10 91.0 24.5 198 35-288 5-222 (541)
266 TIGR02800 propeller_TolB tol-p 98.4 4E-05 8.7E-10 93.8 26.1 229 44-356 170-416 (417)
267 COG4946 Uncharacterized protei 98.4 0.0088 1.9E-07 69.0 42.9 129 267-438 331-462 (668)
268 COG2706 3-carboxymuconate cycl 98.4 0.0008 1.7E-08 75.8 32.8 262 3-335 15-320 (346)
269 COG4946 Uncharacterized protei 98.4 0.0009 2E-08 76.8 33.4 224 82-367 276-507 (668)
270 KOG2314 Translation initiation 98.4 7.7E-05 1.7E-09 86.9 25.2 283 19-383 251-578 (698)
271 KOG4714 Nucleoporin [Nuclear s 98.4 4.1E-06 8.9E-11 89.0 12.7 75 258-341 181-259 (319)
272 KOG0309 Conserved WD40 repeat- 98.4 8.1E-07 1.7E-11 105.4 8.2 227 6-288 93-341 (1081)
273 PRK04792 tolB translocation pr 98.3 7.2E-05 1.6E-09 92.0 24.3 201 128-383 213-430 (448)
274 PRK01029 tolB translocation pr 98.3 0.00012 2.6E-09 89.4 25.7 242 45-359 166-425 (428)
275 COG5354 Uncharacterized protei 98.3 0.0002 4.4E-09 83.1 25.4 270 17-379 32-349 (561)
276 KOG1064 RAVE (regulator of V-A 98.3 2.6E-06 5.7E-11 110.0 11.3 190 131-344 2207-2407(2439)
277 PRK00178 tolB translocation pr 98.3 0.00013 2.8E-09 89.8 25.8 198 128-380 194-408 (430)
278 PRK00178 tolB translocation pr 98.2 0.00026 5.7E-09 87.1 26.9 230 45-358 180-427 (430)
279 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.0054 1.2E-07 71.8 35.2 266 157-507 27-335 (352)
280 PRK11138 outer membrane biogen 98.2 0.0011 2.3E-08 80.7 30.6 268 36-378 71-353 (394)
281 PLN02919 haloacid dehalogenase 98.2 0.00086 1.9E-08 90.3 32.1 220 134-379 625-889 (1057)
282 PRK04792 tolB translocation pr 98.1 0.00031 6.8E-09 86.5 23.7 230 45-358 199-446 (448)
283 COG5170 CDC55 Serine/threonine 98.1 5.8E-05 1.3E-09 81.9 14.7 286 17-377 26-366 (460)
284 KOG4190 Uncharacterized conser 98.1 1.1E-05 2.4E-10 92.7 9.8 231 89-377 749-987 (1034)
285 PRK01029 tolB translocation pr 98.1 0.00083 1.8E-08 82.1 26.0 214 5-290 166-407 (428)
286 KOG4714 Nucleoporin [Nuclear s 98.0 8.7E-05 1.9E-09 79.2 14.4 249 20-334 39-316 (319)
287 PLN02919 haloacid dehalogenase 98.0 0.0036 7.7E-08 84.5 32.7 265 21-338 571-891 (1057)
288 PF00400 WD40: WD domain, G-be 98.0 2.3E-05 5E-10 60.6 6.9 38 247-284 2-39 (39)
289 KOG4190 Uncharacterized conser 98.0 5.2E-05 1.1E-09 87.4 12.4 298 247-606 726-1032(1034)
290 COG5170 CDC55 Serine/threonine 98.0 6.6E-05 1.4E-09 81.5 12.5 244 131-388 25-321 (460)
291 KOG3617 WD40 and TPR repeat-co 98.0 0.00072 1.6E-08 82.1 21.6 107 21-165 19-131 (1416)
292 KOG4532 WD40-like repeat conta 97.9 0.0012 2.7E-08 70.9 20.9 265 5-335 53-330 (344)
293 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.022 4.8E-07 61.3 29.6 98 268-378 23-123 (354)
294 PF13360 PQQ_2: PQQ-like domai 97.9 0.015 3.2E-07 65.1 30.4 218 43-341 2-236 (238)
295 KOG3914 WD repeat protein WDR4 97.9 0.00015 3.2E-09 82.2 13.5 154 190-386 71-232 (390)
296 PF13360 PQQ_2: PQQ-like domai 97.9 0.0025 5.4E-08 71.3 23.4 213 2-290 1-234 (238)
297 PF15492 Nbas_N: Neuroblastoma 97.9 0.02 4.3E-07 63.1 28.8 234 82-379 7-260 (282)
298 KOG2314 Translation initiation 97.8 0.0054 1.2E-07 72.1 25.7 277 21-378 214-525 (698)
299 PF00400 WD40: WD domain, G-be 97.8 6E-05 1.3E-09 58.3 6.3 38 123-163 2-39 (39)
300 KOG1275 PAB-dependent poly(A) 97.8 0.00038 8.2E-09 85.7 16.0 179 147-377 147-341 (1118)
301 PRK11138 outer membrane biogen 97.8 0.0098 2.1E-07 72.2 28.5 262 36-377 122-393 (394)
302 PF08450 SGL: SMP-30/Gluconola 97.7 0.11 2.3E-06 58.7 33.6 211 89-364 13-241 (246)
303 PF15492 Nbas_N: Neuroblastoma 97.7 0.0057 1.2E-07 67.2 21.5 201 21-290 47-263 (282)
304 KOG1832 HIV-1 Vpr-binding prot 97.7 2.6E-05 5.6E-10 94.5 4.0 193 16-290 1100-1295(1516)
305 KOG2695 WD40 repeat protein [G 97.6 0.00018 4E-09 79.6 9.3 165 151-357 228-401 (425)
306 KOG4532 WD40-like repeat conta 97.6 0.0061 1.3E-07 65.7 20.3 224 89-368 85-322 (344)
307 PF07433 DUF1513: Protein of u 97.5 0.034 7.3E-07 63.1 25.7 214 20-290 7-251 (305)
308 PF07433 DUF1513: Protein of u 97.5 0.019 4.2E-07 65.0 23.5 197 135-378 7-247 (305)
309 KOG3621 WD40 repeat-containing 97.5 0.0076 1.7E-07 73.2 21.2 152 146-335 44-196 (726)
310 PF11768 DUF3312: Protein of u 97.4 0.63 1.4E-05 56.5 35.5 224 131-378 84-329 (545)
311 KOG2695 WD40 repeat protein [G 97.3 0.00085 1.8E-08 74.5 9.7 124 255-385 251-384 (425)
312 PF08450 SGL: SMP-30/Gluconola 97.3 0.38 8.3E-06 54.2 31.0 217 22-317 4-233 (246)
313 KOG0882 Cyclophilin-related pe 97.2 0.0038 8.2E-08 71.7 13.4 237 89-378 22-305 (558)
314 KOG3621 WD40 repeat-containing 97.2 0.031 6.8E-07 68.1 21.1 137 312-475 39-181 (726)
315 KOG2066 Vacuolar assembly/sort 97.2 0.0094 2E-07 73.3 16.8 184 132-378 39-233 (846)
316 PF03178 CPSF_A: CPSF A subuni 97.2 0.24 5.2E-06 58.3 28.7 184 157-378 2-202 (321)
317 KOG1275 PAB-dependent poly(A) 97.1 0.007 1.5E-07 75.0 15.2 183 36-285 149-341 (1118)
318 KOG3617 WD40 and TPR repeat-co 97.1 0.014 3E-07 71.5 17.2 105 261-378 20-131 (1416)
319 KOG2114 Vacuolar assembly/sort 97.1 0.073 1.6E-06 66.3 23.3 194 190-445 32-240 (933)
320 PF03178 CPSF_A: CPSF A subuni 97.0 0.46 9.9E-06 56.0 29.3 190 44-287 2-203 (321)
321 PRK04043 tolB translocation pr 97.0 0.16 3.6E-06 61.8 25.8 190 134-380 189-402 (419)
322 KOG2066 Vacuolar assembly/sort 97.0 0.019 4.1E-07 70.8 17.0 186 308-553 39-233 (846)
323 PF11768 DUF3312: Protein of u 97.0 0.61 1.3E-05 56.6 29.0 80 576-675 255-334 (545)
324 PRK04043 tolB translocation pr 96.9 0.12 2.5E-06 63.1 23.8 140 18-201 188-338 (419)
325 KOG1920 IkappaB kinase complex 96.9 0.56 1.2E-05 61.0 29.3 250 180-501 70-364 (1265)
326 KOG0882 Cyclophilin-related pe 96.9 0.006 1.3E-07 70.1 11.0 209 130-386 7-240 (558)
327 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.95 2.1E-05 49.3 29.4 62 146-211 62-123 (354)
328 KOG1920 IkappaB kinase complex 96.8 0.23 4.9E-06 64.4 24.4 217 18-289 69-325 (1265)
329 PRK02888 nitrous-oxide reducta 96.7 0.3 6.5E-06 60.6 24.0 271 35-368 141-451 (635)
330 KOG2114 Vacuolar assembly/sort 96.6 0.26 5.7E-06 61.6 23.1 195 146-379 34-244 (933)
331 PF04053 Coatomer_WDAD: Coatom 96.6 0.45 9.8E-06 58.0 25.5 225 67-378 34-262 (443)
332 KOG1645 RING-finger-containing 96.6 0.086 1.9E-06 60.3 17.3 79 246-335 183-265 (463)
333 PF08596 Lgl_C: Lethal giant l 96.6 0.46 1E-05 57.1 24.5 131 67-211 3-173 (395)
334 PF04841 Vps16_N: Vps16, N-ter 96.6 1.4 3E-05 53.7 29.0 48 45-105 62-109 (410)
335 cd00216 PQQ_DH Dehydrogenases 96.4 2.3 5.1E-05 53.1 30.4 94 270-378 303-424 (488)
336 PF06977 SdiA-regulated: SdiA- 96.1 3.2 6.9E-05 46.6 27.6 213 125-374 14-246 (248)
337 PF06433 Me-amine-dh_H: Methyl 96.1 2.5 5.4E-05 49.0 25.7 268 44-384 17-327 (342)
338 KOG1645 RING-finger-containing 96.1 0.13 2.8E-06 59.0 14.9 84 122-211 183-266 (463)
339 smart00320 WD40 WD40 repeats. 96.0 0.018 4E-07 42.4 5.7 38 247-284 3-40 (40)
340 cd00216 PQQ_DH Dehydrogenases 96.0 4.3 9.3E-05 50.8 29.7 32 314-345 402-434 (488)
341 PF06433 Me-amine-dh_H: Methyl 95.7 5.5 0.00012 46.2 28.9 269 4-348 17-333 (342)
342 PF08553 VID27: VID27 cytoplas 95.7 0.5 1.1E-05 60.8 19.6 126 245-377 513-646 (794)
343 PF08596 Lgl_C: Lethal giant l 95.6 1.9 4.2E-05 51.9 23.4 176 17-211 86-290 (395)
344 smart00320 WD40 WD40 repeats. 95.5 0.035 7.6E-07 40.8 5.6 39 337-376 2-40 (40)
345 PF08553 VID27: VID27 cytoplas 95.4 0.86 1.9E-05 58.7 20.4 153 35-211 493-647 (794)
346 PF06977 SdiA-regulated: SdiA- 95.3 6.3 0.00014 44.3 26.3 165 18-211 22-201 (248)
347 PF14783 BBS2_Mid: Ciliary BBS 95.2 1.4 2.9E-05 42.5 16.0 106 20-160 2-109 (111)
348 PRK02888 nitrous-oxide reducta 95.1 13 0.00029 46.6 31.4 105 264-378 284-404 (635)
349 PF04053 Coatomer_WDAD: Coatom 94.7 4.2 9.1E-05 49.8 22.9 224 20-335 35-261 (443)
350 PF00930 DPPIV_N: Dipeptidyl p 94.2 15 0.00033 43.8 26.0 48 4-57 23-76 (353)
351 KOG1008 Uncharacterized conser 94.0 0.019 4.2E-07 68.9 0.9 203 133-378 57-275 (783)
352 PF05694 SBP56: 56kDa selenium 93.8 19 0.00042 43.1 25.8 200 35-290 87-346 (461)
353 PF14783 BBS2_Mid: Ciliary BBS 93.8 1.6 3.5E-05 42.0 13.1 99 259-373 2-109 (111)
354 COG3204 Uncharacterized protei 93.6 8.9 0.00019 43.2 20.2 185 128-348 81-275 (316)
355 PF12894 Apc4_WD40: Anaphase-p 93.5 0.15 3.3E-06 41.1 4.9 32 579-610 10-41 (47)
356 PF05096 Glu_cyclase_2: Glutam 93.0 19 0.0004 40.6 22.9 99 44-174 68-166 (264)
357 PF00780 CNH: CNH domain; Int 93.0 20 0.00043 40.9 27.5 255 35-347 7-267 (275)
358 COG3386 Gluconolactonase [Carb 92.8 23 0.00051 41.2 23.7 118 246-367 152-274 (307)
359 KOG1832 HIV-1 Vpr-binding prot 92.8 0.1 2.2E-06 64.7 4.3 118 246-378 1091-1214(1516)
360 COG3490 Uncharacterized protei 92.7 12 0.00027 41.7 19.4 100 21-154 71-180 (366)
361 PF00930 DPPIV_N: Dipeptidyl p 92.3 30 0.00065 41.3 29.0 59 35-106 4-72 (353)
362 KOG2395 Protein involved in va 92.2 4.1 9E-05 48.9 16.1 122 245-377 365-499 (644)
363 PF02897 Peptidase_S9_N: Proly 92.1 36 0.00077 41.6 28.1 199 259-502 126-357 (414)
364 PF14583 Pectate_lyase22: Olig 92.0 32 0.00069 40.9 26.8 89 36-151 49-140 (386)
365 KOG1008 Uncharacterized conser 91.9 0.054 1.2E-06 65.3 0.5 188 90-335 72-274 (783)
366 KOG4640 Anaphase-promoting com 91.9 0.62 1.3E-05 56.7 9.2 67 190-290 29-96 (665)
367 COG3391 Uncharacterized conser 91.1 32 0.00068 41.6 23.1 195 22-290 78-287 (381)
368 PF07995 GSDH: Glucose / Sorbo 91.1 38 0.00083 40.0 26.2 109 258-371 3-136 (331)
369 KOG1898 Splicing factor 3b, su 91.0 64 0.0014 42.5 35.8 114 36-168 551-676 (1205)
370 KOG2280 Vacuolar assembly/sort 90.6 11 0.00024 47.4 18.0 50 44-106 64-113 (829)
371 KOG2444 WD40 repeat protein [G 90.4 0.63 1.4E-05 50.1 6.6 106 146-287 69-178 (238)
372 PF00780 CNH: CNH domain; Int 90.2 38 0.00082 38.6 27.3 146 192-379 6-166 (275)
373 PF04841 Vps16_N: Vps16, N-ter 90.1 54 0.0012 40.0 25.5 68 308-377 216-286 (410)
374 PRK13616 lipoprotein LpqB; Pro 90.0 18 0.00039 46.1 20.3 108 255-372 446-562 (591)
375 PF10168 Nup88: Nuclear pore c 89.8 31 0.00067 44.9 22.4 95 580-675 84-184 (717)
376 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.7 68 0.0015 40.6 31.3 31 317-347 471-502 (527)
377 COG3386 Gluconolactonase [Carb 89.0 37 0.0008 39.6 20.3 38 125-165 155-193 (307)
378 PHA02713 hypothetical protein; 89.0 19 0.00041 45.8 19.7 61 267-335 463-532 (557)
379 COG3391 Uncharacterized conser 88.4 66 0.0014 38.8 30.5 259 44-378 11-283 (381)
380 KOG3630 Nuclear pore complex, 87.9 22 0.00048 46.8 18.4 123 257-381 101-231 (1405)
381 PF02897 Peptidase_S9_N: Proly 87.9 74 0.0016 38.8 29.6 148 6-185 109-284 (414)
382 KOG4640 Anaphase-promoting com 87.7 2.2 4.8E-05 52.1 9.3 72 133-211 21-92 (665)
383 KOG2079 Vacuolar assembly/sort 87.1 2.3 5.1E-05 54.9 9.4 79 308-386 89-169 (1206)
384 PF12894 Apc4_WD40: Anaphase-p 87.1 1.6 3.5E-05 35.2 5.3 31 350-380 13-43 (47)
385 PF05096 Glu_cyclase_2: Glutam 86.7 61 0.0013 36.6 24.2 186 134-368 46-250 (264)
386 KOG4441 Proteins containing BT 86.3 33 0.00072 43.7 19.3 142 36-211 286-452 (571)
387 PHA02713 hypothetical protein; 86.0 34 0.00074 43.6 19.4 24 267-290 512-537 (557)
388 PF05694 SBP56: 56kDa selenium 85.5 93 0.002 37.6 25.5 237 45-335 38-341 (461)
389 KOG2395 Protein involved in va 85.3 9.3 0.0002 46.0 12.4 145 36-211 346-500 (644)
390 KOG2444 WD40 repeat protein [G 85.0 2.6 5.6E-05 45.6 7.2 102 268-378 70-177 (238)
391 PF10168 Nup88: Nuclear pore c 84.7 16 0.00035 47.5 15.6 121 36-167 34-181 (717)
392 KOG1897 Damage-specific DNA bi 84.5 1.5E+02 0.0032 39.1 67.0 452 22-553 118-613 (1096)
393 PF15390 DUF4613: Domain of un 82.8 71 0.0015 39.6 18.5 122 132-288 56-188 (671)
394 KOG1896 mRNA cleavage and poly 82.0 2E+02 0.0044 38.8 27.1 191 158-382 1005-1217(1366)
395 KOG2079 Vacuolar assembly/sort 81.2 4.4 9.5E-05 52.6 8.2 99 90-211 101-203 (1206)
396 COG0823 TolB Periplasmic compo 81.2 1.1E+02 0.0024 37.5 20.1 114 67-211 194-312 (425)
397 KOG1916 Nuclear protein, conta 81.0 0.26 5.6E-06 61.7 -2.3 294 43-378 110-423 (1283)
398 PF12234 Rav1p_C: RAVE protein 80.3 36 0.00077 43.3 15.7 111 35-164 41-155 (631)
399 KOG1896 mRNA cleavage and poly 79.5 2.4E+02 0.0053 38.1 45.7 159 482-673 1044-1216(1366)
400 PF08728 CRT10: CRT10; InterP 79.5 24 0.00052 45.2 13.9 123 534-670 113-246 (717)
401 PRK13684 Ycf48-like protein; P 79.3 83 0.0018 37.2 18.0 157 17-211 172-331 (334)
402 PF15390 DUF4613: Domain of un 78.5 1.9E+02 0.004 36.2 28.4 163 17-211 19-186 (671)
403 PF12234 Rav1p_C: RAVE protein 77.9 84 0.0018 40.1 17.9 112 147-285 41-155 (631)
404 KOG4441 Proteins containing BT 76.9 80 0.0017 40.3 17.8 164 5-211 302-499 (571)
405 PF14870 PSII_BNR: Photosynthe 75.7 1.6E+02 0.0036 34.2 33.4 284 9-375 8-301 (302)
406 KOG1916 Nuclear protein, conta 75.4 1.9 4.2E-05 54.4 2.8 123 127-287 127-266 (1283)
407 KOG3630 Nuclear pore complex, 74.9 24 0.00052 46.5 12.0 57 255-318 197-253 (1405)
408 PLN00033 photosystem II stabil 74.3 1.5E+02 0.0032 36.0 18.2 151 257-445 239-396 (398)
409 PRK13616 lipoprotein LpqB; Pro 74.2 2.4E+02 0.0053 36.1 21.0 120 309-452 350-480 (591)
410 PF14583 Pectate_lyase22: Olig 73.9 2E+02 0.0044 34.4 29.1 30 261-290 85-114 (386)
411 COG0823 TolB Periplasmic compo 73.5 84 0.0018 38.5 16.1 128 5-168 219-361 (425)
412 PF14727 PHTB1_N: PTHB1 N-term 72.4 2.4E+02 0.0051 34.5 34.7 154 191-377 35-203 (418)
413 PF08728 CRT10: CRT10; InterP 71.9 69 0.0015 41.3 15.1 165 35-211 49-246 (717)
414 COG3490 Uncharacterized protei 70.8 1.4E+02 0.0029 33.9 15.0 54 24-95 120-180 (366)
415 KOG4499 Ca2+-binding protein R 70.7 1.7E+02 0.0037 32.2 17.8 98 259-357 160-262 (310)
416 KOG1897 Damage-specific DNA bi 70.4 3.6E+02 0.0079 35.8 56.6 107 533-672 838-944 (1096)
417 PF07995 GSDH: Glucose / Sorbo 70.2 2.3E+02 0.005 33.4 27.8 70 303-373 247-330 (331)
418 COG3204 Uncharacterized protei 68.5 2.2E+02 0.0048 32.6 21.3 118 252-378 81-210 (316)
419 COG3823 Glutamine cyclotransfe 67.9 1E+02 0.0022 33.4 12.7 95 44-169 68-162 (262)
420 KOG1898 Splicing factor 3b, su 67.3 2.1E+02 0.0045 38.1 17.6 110 257-378 936-1048(1205)
421 KOG1900 Nuclear pore complex, 67.1 82 0.0018 42.7 14.6 164 492-674 97-276 (1311)
422 PHA03098 kelch-like protein; P 66.9 2.2E+02 0.0047 36.1 18.7 25 146-170 389-419 (534)
423 KOG2377 Uncharacterized conser 66.5 62 0.0014 38.6 11.9 102 253-362 63-167 (657)
424 PLN00033 photosystem II stabil 64.4 91 0.002 37.8 13.6 111 17-162 280-396 (398)
425 PF10313 DUF2415: Uncharacteri 62.9 24 0.00051 28.0 5.3 33 18-53 1-34 (43)
426 PF02333 Phytase: Phytase; In 61.4 3.5E+02 0.0077 32.4 20.8 120 536-672 172-292 (381)
427 KOG2280 Vacuolar assembly/sort 60.2 2.6E+02 0.0057 35.9 16.3 42 133-177 217-258 (829)
428 PF14655 RAB3GAP2_N: Rab3 GTPa 59.4 4E+02 0.0088 32.4 28.8 43 248-290 299-341 (415)
429 KOG1900 Nuclear pore complex, 59.1 71 0.0015 43.2 11.9 71 307-379 177-273 (1311)
430 PF02333 Phytase: Phytase; In 57.5 4.1E+02 0.0089 31.9 24.9 203 319-554 69-291 (381)
431 COG5167 VID27 Protein involved 57.4 1.4E+02 0.0031 36.2 12.9 59 318-378 573-632 (776)
432 PF14655 RAB3GAP2_N: Rab3 GTPa 57.2 94 0.002 37.7 12.0 51 125-178 300-350 (415)
433 PF14781 BBS2_N: Ciliary BBSom 56.9 2.2E+02 0.0048 28.7 14.1 111 35-169 10-129 (136)
434 KOG3616 Selective LIM binding 56.7 52 0.0011 41.2 9.5 109 257-377 15-125 (1636)
435 TIGR02604 Piru_Ver_Nterm putat 56.6 2.6E+02 0.0057 33.4 15.9 104 257-368 14-143 (367)
436 PF10313 DUF2415: Uncharacteri 56.1 31 0.00066 27.4 4.9 31 257-287 1-34 (43)
437 PHA02790 Kelch-like protein; P 55.9 4.3E+02 0.0094 32.9 18.2 25 146-170 362-389 (480)
438 TIGR03075 PQQ_enz_alc_DH PQQ-d 55.4 5.3E+02 0.012 32.6 32.1 117 36-174 71-198 (527)
439 PHA03098 kelch-like protein; P 54.7 3.2E+02 0.0069 34.5 17.2 24 146-169 342-370 (534)
440 PRK13684 Ycf48-like protein; P 53.6 4.4E+02 0.0095 31.1 30.1 114 255-377 213-330 (334)
441 PF14781 BBS2_N: Ciliary BBSom 50.7 2.7E+02 0.0058 28.1 11.8 110 193-340 10-129 (136)
442 PF07569 Hira: TUP1-like enhan 49.7 89 0.0019 34.5 9.5 67 310-378 14-95 (219)
443 TIGR01063 gyrA DNA gyrase, A s 49.5 7.9E+02 0.017 32.9 25.3 220 356-611 492-719 (800)
444 PF10647 Gmad1: Lipoprotein Lp 49.2 4.3E+02 0.0094 29.8 21.8 84 258-343 113-204 (253)
445 PRK10115 protease 2; Provision 48.8 7.6E+02 0.016 32.4 22.7 194 20-286 129-344 (686)
446 PHA02790 Kelch-like protein; P 48.5 6E+02 0.013 31.7 17.7 62 146-211 318-384 (480)
447 TIGR02604 Piru_Ver_Nterm putat 48.2 5.2E+02 0.011 30.9 16.7 39 328-367 164-202 (367)
448 PF07569 Hira: TUP1-like enhan 47.5 1.1E+02 0.0023 33.9 9.6 87 356-460 18-104 (219)
449 PF13449 Phytase-like: Esteras 46.4 5.5E+02 0.012 30.2 18.3 111 257-368 20-166 (326)
450 TIGR03606 non_repeat_PQQ dehyd 44.5 3.6E+02 0.0078 33.3 14.3 112 251-369 24-166 (454)
451 COG4590 ABC-type uncharacteriz 43.1 4.3E+02 0.0094 31.9 13.6 163 252-451 216-389 (733)
452 PF10214 Rrn6: RNA polymerase 42.4 9.8E+02 0.021 31.9 21.2 95 64-164 78-175 (765)
453 TIGR02276 beta_rpt_yvtn 40-res 41.9 85 0.0019 23.9 5.8 28 35-62 3-32 (42)
454 PF12768 Rax2: Cortical protei 41.6 5.4E+02 0.012 29.6 14.3 62 5-74 17-97 (281)
455 PF14761 HPS3_N: Hermansky-Pud 40.8 95 0.0021 33.9 7.6 50 89-155 30-79 (215)
456 COG5276 Uncharacterized conser 40.5 6.2E+02 0.014 29.1 28.5 111 256-379 86-200 (370)
457 COG4247 Phy 3-phytase (myo-ino 40.4 5.7E+02 0.012 28.6 17.4 37 350-386 57-93 (364)
458 PF10647 Gmad1: Lipoprotein Lp 39.5 6E+02 0.013 28.6 23.7 105 258-370 67-187 (253)
459 COG5167 VID27 Protein involved 37.1 3.7E+02 0.008 33.0 12.0 146 89-287 480-633 (776)
460 PF14870 PSII_BNR: Photosynthe 36.4 7.5E+02 0.016 28.8 33.0 155 253-445 141-301 (302)
461 PF11715 Nup160: Nucleoporin N 35.5 87 0.0019 39.8 7.7 85 590-674 156-252 (547)
462 PF12768 Rax2: Cortical protei 35.0 7.6E+02 0.016 28.4 14.9 99 44-169 16-127 (281)
463 KOG2247 WD40 repeat-containing 34.6 5.7 0.00012 47.4 -2.9 149 135-337 37-189 (615)
464 PF14727 PHTB1_N: PTHB1 N-term 33.7 9.7E+02 0.021 29.3 33.8 153 89-287 38-205 (418)
465 KOG4499 Ca2+-binding protein R 32.8 7.3E+02 0.016 27.6 19.5 97 477-589 163-262 (310)
466 TIGR03118 PEPCTERM_chp_1 conse 32.6 8.5E+02 0.018 28.3 22.7 118 259-379 25-171 (336)
467 PF08801 Nucleoporin_N: Nup133 31.7 6.6E+02 0.014 30.6 14.3 28 351-378 192-219 (422)
468 PF12657 TFIIIC_delta: Transcr 31.0 3.8E+02 0.0082 28.2 10.4 43 420-462 86-135 (173)
469 KOG1983 Tomosyn and related SN 28.8 4.1E+02 0.0089 36.4 12.4 66 308-379 198-265 (993)
470 TIGR03032 conserved hypothetic 28.7 1E+03 0.022 27.9 25.2 48 267-325 212-259 (335)
471 COG4257 Vgb Streptogramin lyas 27.9 9.5E+02 0.021 27.4 21.3 152 21-211 65-218 (353)
472 COG5308 NUP170 Nuclear pore co 27.8 4.3E+02 0.0092 34.7 11.1 91 580-674 181-279 (1263)
473 COG5276 Uncharacterized conser 27.6 1E+03 0.022 27.5 28.8 194 132-378 86-285 (370)
474 PF11715 Nup160: Nucleoporin N 27.4 1.7E+02 0.0037 37.2 8.3 33 258-290 216-252 (547)
475 TIGR03074 PQQ_membr_DH membran 27.0 1.6E+03 0.035 29.8 24.5 24 485-508 460-483 (764)
476 PF12657 TFIIIC_delta: Transcr 26.6 2.8E+02 0.006 29.3 8.4 33 134-166 87-122 (173)
477 TIGR03118 PEPCTERM_chp_1 conse 26.1 1.1E+03 0.024 27.5 26.5 248 67-358 24-307 (336)
478 KOG2377 Uncharacterized conser 25.8 2.2E+02 0.0048 34.3 7.8 93 17-142 66-163 (657)
479 PF07676 PD40: WD40-like Beta 25.3 2.1E+02 0.0045 21.6 5.3 31 253-283 5-38 (39)
480 COG4246 Uncharacterized protei 25.0 1E+03 0.022 26.8 12.2 140 420-608 74-218 (340)
481 PF12341 DUF3639: Protein of u 24.8 1.6E+02 0.0035 21.0 4.0 26 309-334 2-27 (27)
482 COG5161 SFT1 Pre-mRNA cleavage 24.6 1.8E+03 0.038 29.4 25.5 62 318-379 1102-1168(1319)
483 TIGR03074 PQQ_membr_DH membran 24.4 1.8E+03 0.039 29.4 22.1 68 147-214 194-281 (764)
484 PRK13979 DNA topoisomerase IV 23.1 2.1E+03 0.045 29.7 27.1 170 356-555 512-691 (957)
485 KOG4460 Nuclear pore complex, 21.4 1.2E+03 0.025 29.1 12.6 128 148-289 53-201 (741)
486 PF10214 Rrn6: RNA polymerase 20.5 2.1E+03 0.045 28.8 16.9 117 19-166 147-277 (765)
No 1
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=100.00 E-value=3e-63 Score=595.75 Aligned_cols=959 Identities=26% Similarity=0.339 Sum_probs=659.6
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g 95 (1371)
+.++++++++- ..||++|+++.|.+||+.++.++..+..++..++| . +.+ ++-..+
T Consensus 6 ~~~~l~~~~~~--------~~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H----~-------~e~-----~~~l~~ 61 (967)
T KOG0974|consen 6 SLGPLNLPQLV--------SDYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH----R-------GEG-----KVKLLS 61 (967)
T ss_pred ccccccchhhc--------cceeeecCCCceEEeeCCchhHhhhhhhhcccccc----c-------ccc-----cceecc
Confidence 56777777776 26999999999999999999988888776666666 2 222 111222
Q ss_pred CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEec
Q 000654 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1371)
Q Consensus 96 d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~ 175 (1371)
...|......... ........+..-.+||....+.. +...++.+..++.+.+||...+....++.+
T Consensus 62 ~~~v~~~~~~~v~-----------~~~~~~~~~~~~s~wi~g~~l~~---e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~ 127 (967)
T KOG0974|consen 62 GKIVTCAKSDEVY-----------VKEASNQIIERFSDWIFGAKLFE---ENKKIALVTSRNSLLIRDSKNSSVLSKIQS 127 (967)
T ss_pred ceEEEEEeeccee-----------ecchhhhhhhhccccccccchhh---hcceEEEEEcCceEEEEecccCceehhcCC
Confidence 2222222221100 00011122334457788777766 778899999999999999999999999999
Q ss_pred CCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecc
Q 000654 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1371)
Q Consensus 176 ~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1371)
.+++..++...+.++++..++++|+..++|.+|++.. ...+. .+.||
T Consensus 128 ~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~--------------------------------dn~p~-~l~GH 174 (967)
T KOG0974|consen 128 DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE--------------------------------DNKPI-RLKGH 174 (967)
T ss_pred CceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc--------------------------------cCCcc-eeccc
Confidence 9999999999999999999999999999999999871 12222 68899
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC
Q 000654 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS 335 (1371)
Q Consensus 256 ~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~ 335 (1371)
++.|+.+.|+.||.+++|+|+|+++|+|++.+.+.. . .+.++|+++||.+.|.++.++|+++|+++++|+.
T Consensus 175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~-----~----~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL-----G----CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGV 245 (967)
T ss_pred CCceEEEEEccCCcEEEEEecCcceeeeeccccccc-----C----cccccccceeEEEEeccceeEEeccceEEEEEec
Confidence 999999999999999999999999999999997652 1 2789999999999999999999999999999999
Q ss_pred CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeec
Q 000654 336 DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT 415 (1371)
Q Consensus 336 ~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~ 415 (1371)
++..+..+.+|.++.||.++..++...++|++.|+.+++|++.+..... +.. .......+..
T Consensus 246 ~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~---~~~--------~~~~~~s~~k------- 307 (967)
T KOG0974|consen 246 NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEG---HVE--------QSSLLSSIVK------- 307 (967)
T ss_pred ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccccc---cee--------eeeeecchhh-------
Confidence 9999999999999999999999999999999999999999996533221 100 0000000000
Q ss_pred cCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCC-CCCCCCCCCEEEEEeCCC
Q 000654 416 DSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE-PKYPCGIDDWVALGDGKG 494 (1371)
Q Consensus 416 ~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~-~~~s~~~~~lla~gs~dG 494 (1371)
.....|.....++..+..+..+ .+... ....++..++..... ...+...+.+++.++..+
T Consensus 308 ------l~~~~f~k~~~~~~~~~~~~~~--~~~~~-----------~~~~~l~~~~~~s~~~i~~~~~~~~~v~~~~~k~ 368 (967)
T KOG0974|consen 308 ------LKDDQFVKCDTLLNFANHGGKL--SILGN-----------KGEKELITFESDSMLRIIFSCTNDDWVAHMSNKG 368 (967)
T ss_pred ------hcceeeeehHHHHHHHhcCCeE--eeccc-----------ccccceeeeeeccCccceehccccceeeeccCCC
Confidence 0111222222222222222211 01111 111222233333222 333455678899999999
Q ss_pred cEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeee
Q 000654 495 NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAE 574 (1371)
Q Consensus 495 ~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~ 574 (1371)
.+.+.................+...+..+....+ +..+=.-++.+++|......+. ......+...++
T Consensus 369 ~~~v~~~~~~~~~~~~~~h~~~s~~~~~~~~~~~--------~~~~~~~~g~~~~r~~~~~~~~----~ad~~~i~~~~~ 436 (967)
T KOG0974|consen 369 DIYVAWHQNTIVITTSSLHRKLSANPISQVCEAS--------YVASKLIDGSIQVRNLSGSLES----FADVLNIRSLKE 436 (967)
T ss_pred cEEEEEeecccCccchhHHHHHhhCcccceeeee--------eehhhccCCcchhhhhhccccc----ccceeEEeeeee
Confidence 8888776543222222211122222222221111 1222234566777764432221 112334555666
Q ss_pred eecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccccccccccCCcCeEEEEEeecCCCceE
Q 000654 575 FSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTE 654 (1371)
Q Consensus 575 ~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~ 654 (1371)
|......+++|+.-.+.+..+++|++.|+|.+|++..+.. ....+.| .+|..++++++.+.+..++..+
T Consensus 437 f~~~~~~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l~~~~~------~~~~~~~-----~~~~~~~~~si~~~~~kdn~~~ 505 (967)
T KOG0974|consen 437 FRLPFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPND------DIVLSLS-----RSHELDTGSSITCIRSKDNSAI 505 (967)
T ss_pred eccccCCCCcceecccCcceEEEccCcCcEEEecCCCCCc------cceeecc-----CcccccccccEEEEecCCCcEE
Confidence 6667788899999999999999999999999999987532 2222211 1566688999999998899999
Q ss_pred EEEEcCCCcEEEEEEecCCcceeeeeccccceeeeeEeEEcCCCccCcccceEEEeecCccEEEEeCccceEEEEeeccC
Q 000654 655 IRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGG 734 (1371)
Q Consensus 655 L~T~g~DG~v~iw~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~l~v~Gf~s~~fvvWn~~~~~el~~i~CGG 734 (1371)
+.++++||++.+.++.+......++.+...+....+....++.+..+..++.+++||+++.|++||++.+.+++...|||
T Consensus 506 ~~~~g~dg~~~~~~~~r~~~~n~~~~L~~~~~~s~v~~g~~~~~~~~~k~n~~~~gf~st~f~l~n~T~~~~i~~~~cGg 585 (967)
T KOG0974|consen 506 FMTTGRDGYWSTIELIRGGTTNYPMELMNKKSFSTVSSGALPSKFINWKGNLLIVGFYSTSFILWNETNETPIFETYCGG 585 (967)
T ss_pred EEEecCCcEEEEEEEecCccccccceeeeeccCCeeeecchhhhhccCCCceEEEEEEeccceEeccccCceeEEEEeCC
Confidence 99999999999999998876655665555554333333344433333447789999999999999999999999999999
Q ss_pred cccccccccCCCCCCceEEEEEeccEEEEEEeeeccCcCCccccccccCCCccceeEeEeecccccccccccccCCCCCe
Q 000654 735 WRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSS 814 (1371)
Q Consensus 735 ~hR~w~~~~~~~~~~~~~fa~~k~~~i~i~~~~~~~~~~~~~~~~l~~~~HgreI~sv~~s~~~~~~~~~~~~~~~~~~~ 814 (1371)
.||.|+|.. .....++.+.+.+..+++........ ...+..+.|+++|+++.|.+-++- +.......+.
T Consensus 586 ~hr~wal~g---~t~~~~~~re~~~~~~i~~~~~~~~~----s~~~~nglh~~~irai~~~~~~tt----v~~~~~~~~t 654 (967)
T KOG0974|consen 586 SHRIWALNG---STDNQFNFREIASSQLIRQKIDNLSR----NSWISNGLHGREIRAISFSPYSTT----VSLDEHLSGS 654 (967)
T ss_pred eeEEeecCC---ccccceeeeecccccEEEEEeecccc----cccccCCCCCCceeeeEecccccc----eecccCCcce
Confidence 999999963 23334555555555555533222111 224567789999998888752110 1111223345
Q ss_pred EEEEccCCCeEEEEEecCCCCcccceeccccccCccceeeeeeecccccccccccCCCccccccccccccCCCCEEEEEe
Q 000654 815 WIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISV 894 (1371)
Q Consensus 815 ~iaTGseD~tIrl~~~~~~~~~~~~~~~l~~H~~gsav~~i~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~ll~S~ 894 (1371)
.++++++|+++++..+.. ... ++ ...++.-++......+++++
T Consensus 655 ~~~~a~~~~~~~l~sv~~----------------------v~~--------------~~-~~t~~~~~d~~~g~~~~~~~ 697 (967)
T KOG0974|consen 655 AVRSASCDGNIKLISVIF----------------------VNE--------------NL-QCTDWYDEDDENGTVYLLTG 697 (967)
T ss_pred eEEeeeccccceeEEEEe----------------------ccc--------------Cc-ccCCCCCcCCCCCcEEEEEe
Confidence 666666666666655443 111 00 00011111222345677777
Q ss_pred cccceEEEEEEEecccCccccceeeeccccCCCccccccCCCCcceecccccCCCCcccccCCccccccccccccccccc
Q 000654 895 GAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSSTHGKKKDMKKVDHITRNIAS 974 (1371)
Q Consensus 895 g~d~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1371)
++++.++ +|.+++. .+|..++.| .+..+||+..+
T Consensus 698 ~gkr~i~----------------~~~~l~~----------~s~e~~~~~------~~s~~~~~~~~-------------- 731 (967)
T KOG0974|consen 698 GGKRKIS----------------SENILWR----------SSHELDEVW------DRSLRRHRPVK-------------- 731 (967)
T ss_pred ccceeec----------------hhhhHhh----------hhhhhcccC------hhHhhhcCcee--------------
Confidence 7777777 1445555 778888777 77777788777
Q ss_pred cccccccCcccchhhhHHhhhccCCCCCCcceEEEEEEEeeecCCccceEEEEEEEeCccceeeeeccc-cchhhhhhhh
Q 000654 975 MNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFLVKCPGSRLTVCFVVVACSDATLALRALIL-PLRLWFEVAM 1053 (1371)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~a~sd~~~~~~~~~~-~~~~~~~~~~ 1053 (1371)
++||+|||++.+.+..++|. .+||+++||+|+++.+-... ..+..++..+
T Consensus 732 --------------------------~~p~~Ri~~v~v~~laq~g~---~~lv~s~~s~~~ti~i~~~~~~~~~l~~l~~ 782 (967)
T KOG0974|consen 732 --------------------------YDPETRIMDVAVCELAQEGL---GVLVASLVSSGSTIKIFLYDNSGRILQLLIE 782 (967)
T ss_pred --------------------------ECCCccEEEeeeeeecccCC---cceEEEEecCCceEEEEeecccchhhhheee
Confidence 89999999999998887774 47899999877765544444 5677788999
Q ss_pred hcCCCCceEEEeeeeecccCCCccccccccEEEEEEecCCCcEEEEeCCchhHHHHhhhcccccccccccCCCCCCCCCC
Q 000654 1054 LVPLSSPVLALQHVIMPIHLPSKENVQIGSSYFVISGATDGSIAFWDVTGHVETFVQQVSTLHIENFIDCQKRPRTGRGS 1133 (1371)
Q Consensus 1054 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~tdg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (1371)
.++++.|+|++. +.+++ ......+|.++||+|||+++|||+| ++.+...+.++++.+|+.|||+|+++
T Consensus 783 s~~~k~~~L~l~-~~v~~------~~~~~~vv~~tSg~~~~s~~fW~~~-----~v~~~~~i~i~~~~~~gv~s~~g~~s 850 (967)
T KOG0974|consen 783 SRHEKTCCLKLH-EFVAE------APSKSLVVVLTSGATDGSNAFWDDG-----TVNLPDSIWIEPPHDSGVKSRLGTPS 850 (967)
T ss_pred eeecccEEEEeh-hhhhc------CCcceEEEEEecccccceeeeeecc-----ccccccceeeccccccCccccccCCc
Confidence 999999999985 22222 2344567799999999999999999 66667889999999999999999877
Q ss_pred CCCcccccccCCCCCCCCCCcceeeccCCCcccccccCCccccCCCCCcccccCccccCCcccccCCCCCCCccccceeE
Q 000654 1134 QGGRWWRNLRHTRPNKESGSSIVSVRTEGGVQNHDACGVSANVNDTENCTVEDGQIASCEPELNAVNSTSETSEIRPIHI 1213 (1371)
Q Consensus 1134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1213 (1371)
-+-
T Consensus 851 ~~l----------------------------------------------------------------------------- 853 (967)
T KOG0974|consen 851 LVL----------------------------------------------------------------------------- 853 (967)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 221
Q ss_pred eecccccccceEEEeeecccccCCCCeEEEEEEccCCCeEEEEEEEeeccCCCCCccceeecccccCCCchhhhhhhhcc
Q 000654 1214 LNNAHQSGVNCLHVSKIKNCWSTECGFHFYVVSGGDDQAIHCLRVDLSLLSRGPDSEIIAADVINSNSESEDVKSLIYYG 1293 (1371)
Q Consensus 1214 ~~~~h~~g~n~~~~~~~~~~~~~~~~~~~~~~~ggdd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1293 (1371)
.+|-.|.|.+|.....+. .-+.+|+--++++|.+.+...+.+..+ ++ -
T Consensus 854 --~i~~~G~d~~~s~~~~~~-------~~~sss~~lt~~~~~~v~a~~~~ss~~--~v----~----------------- 901 (967)
T KOG0974|consen 854 --TISTGGCDSLHSLPTLEL-------EDLSSSSSLTNSLHVFVLAAEMASSVS--LV----L----------------- 901 (967)
T ss_pred --eeeecccccccccccccc-------ccccccceeccchhheeehhhhcccce--ee----e-----------------
Confidence 344556666665554433 345666777788888777765444321 11 0
Q ss_pred ccCCCceeEEEEEeeccccccccceeeeeec-CcEEEeecccceEEEEEeecccceeeeeeEEEecCC
Q 000654 1294 QEQNQNYRIRFYNYFRATSAHSSAIKGIWTD-GTWVFSTGLDQRIRFWLLEEHSILSQHAHLVVSVPE 1360 (1371)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~~ah~~~~~~~~~~-~~~~~s~~~dqr~~~w~~~~~~~~~~~~~~~~~~~~ 1360 (1371)
+......+++.-+.++|.+|.++.++.++. +..++|++.|||+.||+++ ++.+++....+.||||
T Consensus 902 -~~~ts~~l~~s~~~~I~c~~vt~~~~s~il~~~~~Vsg~idq~l~~~~~g-~g~~~f~~~tl~~v~d 967 (967)
T KOG0974|consen 902 -EIGTSPVLRVSEDSRIPCWHVTPVTLSKILEPVAVVSGSIDQSLTCWRLG-IGEPTFMNSTLSHVPD 967 (967)
T ss_pred -eecceeeeeecccCCcceEEEcCCCccccccceeEeecccccchhhhhhc-CCCccccCceeEecCC
Confidence 112233478888999999999999999984 5899999999999999999 9999999999999997
No 2
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-41 Score=381.19 Aligned_cols=528 Identities=19% Similarity=0.257 Sum_probs=390.6
Q ss_pred ccEEEEeCCCCc-------ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe-E-EEEEEeecCccEEEEEe
Q 000654 4 KDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-L-IRPFQVFHGIRLHGISC 73 (1371)
Q Consensus 4 ~tV~iWdl~~~~-------h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~-~-l~~~~~~~~~~I~~i~~ 73 (1371)
+.|.+-++.... |..+++-..|+ |. |.|+|+|. .|.|||||....+ . -.+++++.+ +|..|+|
T Consensus 39 ksv~ir~i~~~~~~~iYtEH~~~vtVAkyS--Ps----G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG-~I~Di~W 111 (603)
T KOG0318|consen 39 KSVIIRNIDNPASVDIYTEHAHQVTVAKYS--PS----GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAG-PIKDISW 111 (603)
T ss_pred CEEEEEECCCccceeeeccccceeEEEEeC--CC----ceEEeecCCcCcEEEEeccCcceeeeeeeeeccc-cccccee
Confidence 346666666654 88899999999 98 88999998 5999999986533 2 357788887 9999999
Q ss_pred eccccccCCCCcceeeEEEEECC-----CeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCC-
Q 000654 74 NFINCTEGSVSTRVTFEVALFGE-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN- 147 (1371)
Q Consensus 74 s~~~~~~~pdg~~~~~~la~~gd-----~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg- 147 (1371)
+ +|+ ..|++.|+ +.+.+||-- .-+..+.||...|++++|-| ..
T Consensus 112 d-------~ds----~RI~avGEGrerfg~~F~~DSG-----------------~SvGei~GhSr~ins~~~Kp---sRP 160 (603)
T KOG0318|consen 112 D-------FDS----KRIAAVGEGRERFGHVFLWDSG-----------------NSVGEITGHSRRINSVDFKP---SRP 160 (603)
T ss_pred C-------CCC----cEEEEEecCccceeEEEEecCC-----------------CccceeeccceeEeeeeccC---CCc
Confidence 9 888 56666654 345556543 33456779999999999998 44
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCC
Q 000654 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1371)
Q Consensus 148 ~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~ 227 (1371)
-+++||+.|++|.+|+-.-.+...++..|.+ .+++++| +|||.++++.+.||+|.+||-.
T Consensus 161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk-FV~~VRy---sPDG~~Fat~gsDgki~iyDGk---------------- 220 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSK-FVNCVRY---SPDGSRFATAGSDGKIYIYDGK---------------- 220 (603)
T ss_pred eEEEeccCCCeEEEeeCCCeeeeeccccccc-ceeeEEE---CCCCCeEEEecCCccEEEEcCC----------------
Confidence 4799999999999998766555555555554 7888888 9999999999999999999988
Q ss_pred CCCCCCcceeeecccccceeeEEEEe---cccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEe
Q 000654 228 HGSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1371)
Q Consensus 228 ~~~~~~~~~i~i~~~~~~~~~~~~l~---gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~ 304 (1371)
++..+..+. +|.+.|++|+|+||+..++|+|.|.+++|||+.+... ++.+ .
T Consensus 221 -----------------tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl-----v~t~----~ 274 (603)
T KOG0318|consen 221 -----------------TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL-----VSTW----P 274 (603)
T ss_pred -----------------CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce-----EEEe----e
Confidence 556666666 8999999999999999999999999999999998765 3311 1
Q ss_pred ecCC--ccEEEEEEcCCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC
Q 000654 305 YGHN--ARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (1371)
Q Consensus 305 ~gh~--~~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~ 381 (1371)
.+.. ..-..+.|....|++-+.+|+|.+++. +..+++.+.+|.. +|++++.+|++++|++|+.||.|.-|+.....
T Consensus 275 ~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence 2222 334556667889999999999999999 7889999999998 79999999999999999999999999994322
Q ss_pred cccc--cCCCccc---cccCCccEEEeeecCCccceeecc---------CCCccEEEEEEecCCcEEEEEcCCcEEEEEe
Q 000654 382 PGSL--ESHPEAK---EFNGRTEIFSIKIPNFSEQIRLTD---------SKSEYVRCLHLTSEDTLYIATNHGYLYHTKL 447 (1371)
Q Consensus 382 ~~~l--~~~~~~~---~~~~~~~i~s~~~~~~~~~~~~~~---------~~~~~V~~lafs~d~~llv~t~~G~i~~~~l 447 (1371)
...+ ++|...+ ......+++.+...+..+.+...+ .......+++..+++.+++.+..+.+..+
T Consensus 354 ~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l-- 431 (603)
T KOG0318|consen 354 SDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL-- 431 (603)
T ss_pred ccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE--
Confidence 2222 2333222 112335566655444433221111 11123357888888766655555555432
Q ss_pred ecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEE
Q 000654 448 CDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGT 527 (1371)
Q Consensus 448 ~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~ 527 (1371)
.+.. .+...+......++++ .+++..+++|..||+|+||.+..+.+..... ...+...+ .
T Consensus 432 ~~~~-----~~~~~~~~y~~s~vAv--------~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-----~~~h~a~i--T 491 (603)
T KOG0318|consen 432 QDQT-----KVSSIPIGYESSAVAV--------SPDGSEVAVGGQDGKVHVYSLSGDELKEEAK-----LLEHRAAI--T 491 (603)
T ss_pred ecCC-----cceeeccccccceEEE--------cCCCCEEEEecccceEEEEEecCCcccceee-----eecccCCc--e
Confidence 2222 1223333444455555 4678999999999999999998766443211 11122222 2
Q ss_pred EEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEE
Q 000654 528 YWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLF 607 (1371)
Q Consensus 528 ~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iw 607 (1371)
.+.+||++.||+++...+.+.+|++...+. .... ..-|..+|.|++|+|++.++|+|+-|-+|.||
T Consensus 492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~-------------~~~~-w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 492 DVAYSPDGAYLAAGDASRKVVLYDVASREV-------------KTNR-WAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred EEEECCCCcEEEEeccCCcEEEEEcccCce-------------ecce-eeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 468999999999999999999999986532 0111 12389999999999999999999999999999
Q ss_pred EcCcccccccccccccccccccccccccCCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEe
Q 000654 608 PLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYD 670 (1371)
Q Consensus 608 d~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~ 670 (1371)
++++. ... -..+++|- ..|++|.|.. +..++|+|.|.+||+|.+.
T Consensus 558 sv~kP-------~~~------i~iknAH~-~gVn~v~wld----e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 558 SVKKP-------AKH------IIIKNAHL-GGVNSVAWLD----ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EccCh-------hhh------eEeccccc-cCceeEEEec----CceEEeccCcceeEEeccc
Confidence 99863 111 13467887 5599999993 5899999999999999874
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-42 Score=397.75 Aligned_cols=579 Identities=16% Similarity=0.219 Sum_probs=427.8
Q ss_pred EEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeE-EEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEE
Q 000654 23 LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTL-IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101 (1371)
Q Consensus 23 vafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~-l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~v 101 (1371)
++|+ ++ |..|++..+..|.+-|+++++. +..........|.++++. ||++ .++.++-.+-+++
T Consensus 25 ~~~s--~n----G~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~-------~d~~---~L~~a~rs~llrv 88 (775)
T KOG0319|consen 25 VAWS--SN----GQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALT-------PDEE---VLVTASRSQLLRV 88 (775)
T ss_pred eeEC--CC----CCEEEEecCceEEEEEccCCceecccCCccchhhhheeeec-------CCcc---EEEEeeccceEEE
Confidence 7899 88 8999999999999999999987 544443344579999999 8873 5555556899999
Q ss_pred EEeccCCCCCCCCCCccceeeeeeeeccC-CCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcce
Q 000654 102 FELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (1371)
Q Consensus 102 wdl~~~~~~~~~~~~~~~v~~~~~~~l~g-h~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~ 180 (1371)
|++.+ .+.+...+. |..||.-++|+| .+..|++|+.|+.+++||+..+.+...++++.+ .
T Consensus 89 ~~L~t---------------gk~irswKa~He~Pvi~ma~~~---~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG-v 149 (775)
T KOG0319|consen 89 WSLPT---------------GKLIRSWKAIHEAPVITMAFDP---TGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG-V 149 (775)
T ss_pred EEccc---------------chHhHhHhhccCCCeEEEEEcC---CCceEEeccccceEEEEEeeCCEEEEEecCCCc-e
Confidence 99986 456677777 999999999999 889999999999999999999999999988654 6
Q ss_pred EEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEE
Q 000654 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (1371)
Q Consensus 181 v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~ 260 (1371)
+.++.|++. +...+|++|..|+.+++||+.. ...+++.+..|.+.|+
T Consensus 150 Vssl~F~~~-~~~~lL~sg~~D~~v~vwnl~~--------------------------------~~tcl~~~~~H~S~vt 196 (775)
T KOG0319|consen 150 VSSLLFHPH-WNRWLLASGATDGTVRVWNLND--------------------------------KRTCLHTMILHKSAVT 196 (775)
T ss_pred EEEEEeCCc-cchhheeecCCCceEEEEEccc--------------------------------CchHHHHHHhhhhhee
Confidence 778888654 3446799999999999999981 2224677889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-------CCEEEEEeCCCeEEEE
Q 000654 261 RIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------DSFIITAGEDCTCRVW 333 (1371)
Q Consensus 261 ~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-------~~~L~Sgs~Dg~I~VW 333 (1371)
+++|++|+.-+++++.|..+.+||+...+.. . ..+-...+-++.+- +.+++|+|++|.+++|
T Consensus 197 sL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l-----~------~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~ 265 (775)
T KOG0319|consen 197 SLAFSEDSLELLSVGRDKVIIVWDLVQYKKL-----K------TLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYW 265 (775)
T ss_pred eeeeccCCceEEEeccCcEEEEeehhhhhhh-----h------eechhhheeeEEEechhcCCcceEEEEecCCceEEEE
Confidence 9999999999999999999999999665541 1 11112233333332 3599999999999999
Q ss_pred eC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC-CCcccccCCCccccccCCccEEEeeecCCccc
Q 000654 334 GS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (1371)
Q Consensus 334 d~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~-~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~ 411 (1371)
|. .++++...+......+..+...+....++....|..+.++|.+. ...+
T Consensus 266 d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k---------------------------- 317 (775)
T KOG0319|consen 266 DSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVK---------------------------- 317 (775)
T ss_pred ecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEeh----------------------------
Confidence 99 66665544433222366777666666777778899999998742 1111
Q ss_pred eeeccCCCccEEEEEEecC--CcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEE
Q 000654 412 IRLTDSKSEYVRCLHLTSE--DTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVAL 489 (1371)
Q Consensus 412 ~~~~~~~~~~V~~lafs~d--~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~ 489 (1371)
.+-+-.+.|.+++|..+ ..+.++++.+.+..+ +..+..+ ++..+| ...+.++++. ..+.++++
T Consensus 318 --~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y---~~~~~~c-~ii~GH-~e~vlSL~~~--------~~g~llat 382 (775)
T KOG0319|consen 318 --QIVGYNDEILDMKFLGPEESHLAVATNSPELRLY---TLPTSYC-QIIPGH-TEAVLSLDVW--------SSGDLLAT 382 (775)
T ss_pred --hhcCCchhheeeeecCCccceEEEEeCCCceEEE---ecCCCce-EEEeCc-hhheeeeeec--------ccCcEEEE
Confidence 11233455777777652 356778888877655 4433333 477777 5677777742 23579999
Q ss_pred EeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCcccee
Q 000654 490 GDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNV 569 (1371)
Q Consensus 490 gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l 569 (1371)
|+.|..+++|.++++..... .......+...++.+.+....-.+|+++|.|+++++|+++...+... ..
T Consensus 383 ~sKD~svilWr~~~~~~~~~----~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-------~~ 451 (775)
T KOG0319|consen 383 GSKDKSVILWRLNNNCSKSL----CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-------PI 451 (775)
T ss_pred ecCCceEEEEEecCCcchhh----hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-------cc
Confidence 99999999999954432211 11122233333343333334557899999999999999986332111 11
Q ss_pred eeeeee-ecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccccccccccCCcCeEEEEEeec
Q 000654 570 FLVAEF-SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKL 648 (1371)
Q Consensus 570 ~l~~~~-~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~ 648 (1371)
.+...+ ...|+..|+|++++|+++++|+||.|.+.+||+++.. ....++.| |. -+|-+|.|+
T Consensus 452 ~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-------------~l~~vLsG-H~-RGvw~V~Fs-- 514 (775)
T KOG0319|consen 452 VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-------------RLLGVLSG-HT-RGVWCVSFS-- 514 (775)
T ss_pred eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-------------eEEEEeeC-Cc-cceEEEEec--
Confidence 111111 3489999999999999999999999999999999853 23345543 43 579999999
Q ss_pred CCCceEEEEEcCCCcEEEEEEecCCcceeeeeccccceeeeeEeEEcCCCccCcccceEEEeecCccEEEEeCccceEEE
Q 000654 649 RSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVV 728 (1371)
Q Consensus 649 ~~~~~~L~T~g~DG~v~iw~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~l~v~Gf~s~~fvvWn~~~~~el~ 728 (1371)
+....++|+|.|++|+||.++.... .
T Consensus 515 -~~dq~laT~SgD~TvKIW~is~fSC----l------------------------------------------------- 540 (775)
T KOG0319|consen 515 -KNDQLLATCSGDKTVKIWSISTFSC----L------------------------------------------------- 540 (775)
T ss_pred -cccceeEeccCCceEEEEEecccee----e-------------------------------------------------
Confidence 5568999999999999999875311 0
Q ss_pred EeeccCcccccccccCCCCCCceEEEEEeccEEEEEEeeeccCcCCccccccccCCCccceeEeEeeccccccccccccc
Q 000654 729 QIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKS 808 (1371)
Q Consensus 729 ~i~CGG~hR~w~~~~~~~~~~~~~fa~~k~~~i~i~~~~~~~~~~~~~~~~l~~~~HgreI~sv~~s~~~~~~~~~~~~~ 808 (1371)
. ...+|...|--+.|..+
T Consensus 541 ---------------------------------k------------------T~eGH~~aVlra~F~~~----------- 558 (775)
T KOG0319|consen 541 ---------------------------------K------------------TFEGHTSAVLRASFIRN----------- 558 (775)
T ss_pred ---------------------------------e------------------eecCccceeEeeeeeeC-----------
Confidence 0 00178899998899854
Q ss_pred CCCCCeEEEEccCCCeEEEEEecCCCCcccceeccccccCccceeeeeeecccccccccccCCCccccccccccccCCCC
Q 000654 809 ALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENP 888 (1371)
Q Consensus 809 ~~~~~~~iaTGseD~tIrl~~~~~~~~~~~~~~~l~~H~~gsav~~i~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~ 888 (1371)
+..|+|++-||-|+||++.+ .....+|.+|. -.|=++... .+.
T Consensus 559 ----~~qliS~~adGliKlWnikt----~eC~~tlD~H~--DrvWaL~~~---------------------------~~~ 601 (775)
T KOG0319|consen 559 ----GKQLISAGADGLIKLWNIKT----NECEMTLDAHN--DRVWALSVS---------------------------PLL 601 (775)
T ss_pred ----CcEEEeccCCCcEEEEeccc----hhhhhhhhhcc--ceeEEEeec---------------------------Ccc
Confidence 67999999999999999987 46789999999 666666552 134
Q ss_pred EEEEEecccceEEEEE
Q 000654 889 FLLISVGAKRVLTSWL 904 (1371)
Q Consensus 889 ~ll~S~g~d~~i~vW~ 904 (1371)
..++|||+|++|..|.
T Consensus 602 ~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 602 DMFVTGGGDGRIIFWK 617 (775)
T ss_pred ceeEecCCCeEEEEee
Confidence 5899999999999997
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-39 Score=376.68 Aligned_cols=543 Identities=17% Similarity=0.221 Sum_probs=405.4
Q ss_pred EEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEE
Q 000654 71 ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1371)
Q Consensus 71 i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~L 150 (1371)
++|+ ++| ..|++.-...|.+-|+.+.. ......-..-.+.|++++..| |+.+|
T Consensus 25 ~~~s-------~nG----~~L~t~~~d~Vi~idv~t~~-------------~~l~s~~~ed~d~ita~~l~~---d~~~L 77 (775)
T KOG0319|consen 25 VAWS-------SNG----QHLYTACGDRVIIIDVATGS-------------IALPSGSNEDEDEITALALTP---DEEVL 77 (775)
T ss_pred eeEC-------CCC----CEEEEecCceEEEEEccCCc-------------eecccCCccchhhhheeeecC---CccEE
Confidence 7888 888 45555555678888887644 111112223457899999999 99999
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCC
Q 000654 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1371)
Q Consensus 151 atgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~ 230 (1371)
++++....+++|++.+++.++.++..+..++.-+.+ +|.+.++++|+.||.++|||+.
T Consensus 78 ~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~---~~~g~LlAtggaD~~v~VWdi~------------------- 135 (775)
T KOG0319|consen 78 VTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAF---DPTGTLLATGGADGRVKVWDIK------------------- 135 (775)
T ss_pred EEeeccceEEEEEcccchHhHhHhhccCCCeEEEEE---cCCCceEEeccccceEEEEEee-------------------
Confidence 999999999999999999998888866666777777 6778999999999999999999
Q ss_pred CCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCC--EEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCC
Q 000654 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS--KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (1371)
Q Consensus 231 ~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~--~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~ 308 (1371)
.....+.|.||.+.|.++.|.|+-. .|++|..|+++++||+.+... ++ .++..|.
T Consensus 136 --------------~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----cl-----~~~~~H~ 192 (775)
T KOG0319|consen 136 --------------NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----CL-----HTMILHK 192 (775)
T ss_pred --------------CCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch----HH-----HHHHhhh
Confidence 6788999999999999999999764 589999999999999986543 12 3788999
Q ss_pred ccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCC-----CCEEEEEECCCcEEEEEcCC-
Q 000654 309 ARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL-----SSLLVTAGFDSAIKVHQFQA- 379 (1371)
Q Consensus 309 ~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spd-----g~~L~Tgg~Dg~I~lwdl~~- 379 (1371)
+.|++++|. +..+++++.|..|.|||+ +-+.++++..... +-++.+-++ +.+++|+|.+|.+++||.++
T Consensus 193 S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~--~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 193 SAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYES--LESVVRLREELGGKGEYIITAGGSGVVQYWDSESG 270 (775)
T ss_pred hheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhh--eeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence 999999998 578999999999999999 6666777765554 888888777 67999999999999999954
Q ss_pred CCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeE
Q 000654 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKIL 459 (1371)
Q Consensus 380 ~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~ 459 (1371)
.++..... ++ ..+....+.....+++++.+.+..+++++. ....-.+-+
T Consensus 271 ~~~~~~~~------------------~~----------~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~---~~l~i~k~i 319 (775)
T KOG0319|consen 271 KCVYKQRQ------------------SD----------SEEIDHLLAIESMSQLLLVTAEQNLFLYDE---DELTIVKQI 319 (775)
T ss_pred hhhhhhcc------------------CC----------chhhhcceeccccCceEEEEccceEEEEEc---cccEEehhh
Confidence 22211110 00 001223444455667888888888876533 222211111
Q ss_pred eecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEE
Q 000654 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539 (1371)
Q Consensus 460 ~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~ 539 (1371)
-+. ..+|..|.+. .++.+.++++++.+.+++|++.+..|. ....+...++++ ....+|-+|+
T Consensus 320 vG~-ndEI~Dm~~l-------G~e~~~laVATNs~~lr~y~~~~~~c~--------ii~GH~e~vlSL--~~~~~g~lla 381 (775)
T KOG0319|consen 320 VGY-NDEILDMKFL-------GPEESHLAVATNSPELRLYTLPTSYCQ--------IIPGHTEAVLSL--DVWSSGDLLA 381 (775)
T ss_pred cCC-chhheeeeec-------CCccceEEEEeCCCceEEEecCCCceE--------EEeCchhheeee--eecccCcEEE
Confidence 222 3566666543 366789999999999999988775544 122223333332 2234567999
Q ss_pred EEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecC-CCEEEEecCCCeEEEEEcCcccccccc
Q 000654 540 TADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE-DEVLFCGDLRGNLVLFPLLRDLLNDKS 618 (1371)
Q Consensus 540 s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spd-g~lLatGs~dGtI~Iwd~~~~~~~~~~ 618 (1371)
|++.|..+++|+++.... ...+.+. ..+|...|.+++++.. -.+|++++.|+++++|++.....
T Consensus 382 t~sKD~svilWr~~~~~~----------~~~~~a~-~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~---- 446 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCS----------KSLCVAQ-ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE---- 446 (775)
T ss_pred EecCCceEEEEEecCCcc----------hhhhhhh-hcccccccceeeecccCccEEEEecCCceEEEecCCCccc----
Confidence 999999999999954321 1122222 4589999999999764 45999999999999999987210
Q ss_pred cccccccccccccccccCCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEecCCcceeeeeccccceeeeeEeEEcCCC
Q 000654 619 VALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENN 698 (1371)
Q Consensus 619 ~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~ 698 (1371)
...+..+ ...+...+|+ ..|++|+++ ++...|+|+|.|.+.++|+++....
T Consensus 447 ~~~~~~~-~~~~t~~aHd-KdIN~Vaia---~ndkLiAT~SqDktaKiW~le~~~l------------------------ 497 (775)
T KOG0319|consen 447 TAFPIVL-TCRYTERAHD-KDINCVAIA---PNDKLIATGSQDKTAKIWDLEQLRL------------------------ 497 (775)
T ss_pred cccccee-hhhHHHHhhc-ccccceEec---CCCceEEecccccceeeecccCceE------------------------
Confidence 0011111 1224555888 669999999 6679999999999999999873210
Q ss_pred ccCcccceEEEeecCccEEEEeCccceEEEEeeccCcccccccccCCCCCCceEEEEEeccEEEEEEeeeccCcCCcccc
Q 000654 699 SIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPK 778 (1371)
Q Consensus 699 ~~~~~~~l~v~Gf~s~~fvvWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~fa~~k~~~i~i~~~~~~~~~~~~~~~ 778 (1371)
. .+
T Consensus 498 --------~------------------------------------------------------~v--------------- 500 (775)
T KOG0319|consen 498 --------L------------------------------------------------------GV--------------- 500 (775)
T ss_pred --------E------------------------------------------------------EE---------------
Confidence 0 00
Q ss_pred ccccCCCccceeEeEeecccccccccccccCCCCCeEEEEccCCCeEEEEEecCCCCcccceeccccccCccceeeeeee
Q 000654 779 NLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFV 858 (1371)
Q Consensus 779 ~l~~~~HgreI~sv~~s~~~~~~~~~~~~~~~~~~~~iaTGseD~tIrl~~~~~~~~~~~~~~~l~~H~~gsav~~i~~~ 858 (1371)
..+|.|.|.||.|+++ .+++||+|-|+|||||.+.. ...++++.+|. ++|-...|+
T Consensus 501 ---LsGH~RGvw~V~Fs~~---------------dq~laT~SgD~TvKIW~is~----fSClkT~eGH~--~aVlra~F~ 556 (775)
T KOG0319|consen 501 ---LSGHTRGVWCVSFSKN---------------DQLLATCSGDKTVKIWSIST----FSCLKTFEGHT--SAVLRASFI 556 (775)
T ss_pred ---eeCCccceEEEEeccc---------------cceeEeccCCceEEEEEecc----ceeeeeecCcc--ceeEeeeee
Confidence 1289999999999976 58999999999999999987 67899999999 999999887
Q ss_pred cccccccccccCCCccccccccccccCCCCEEEEEecccceEEEEEEEec
Q 000654 859 SEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRHR 908 (1371)
Q Consensus 859 ~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~ll~S~g~d~~i~vW~~~~~ 908 (1371)
. ++..|+|+|+|+-||+|++...
T Consensus 557 ~---------------------------~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 557 R---------------------------NGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred e---------------------------CCcEEEeccCCCcEEEEeccch
Confidence 3 3678999999999999997766
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-35 Score=332.76 Aligned_cols=562 Identities=16% Similarity=0.206 Sum_probs=404.8
Q ss_pred CCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEE
Q 000654 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1371)
Q Consensus 82 pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~v 161 (1371)
|.| ..|+.+.+++|.+-+++.. .....+..|...++-..|+| .|.++|+|...|.|||
T Consensus 28 pkg----d~ilY~nGksv~ir~i~~~---------------~~~~iYtEH~~~vtVAkySP---sG~yiASGD~sG~vRI 85 (603)
T KOG0318|consen 28 PKG----DNILYTNGKSVIIRNIDNP---------------ASVDIYTEHAHQVTVAKYSP---SGFYIASGDVSGKVRI 85 (603)
T ss_pred CCC----CeEEEeCCCEEEEEECCCc---------------cceeeeccccceeEEEEeCC---CceEEeecCCcCcEEE
Confidence 777 5778888899999999863 34556778999999999999 8999999999999999
Q ss_pred EECCCCeEEEEE-ecCCcceEEEEEeeccCCCCcEEEEEeC----CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcce
Q 000654 162 WDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (1371)
Q Consensus 162 Wd~~~~~~~~~l-~~~~~~~v~s~~~~~~s~d~~~Lasgs~----dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~ 236 (1371)
||......+.+- ...-...+..+.+ +.++.++++.+. .|.+.+||
T Consensus 86 Wdtt~~~hiLKnef~v~aG~I~Di~W---d~ds~RI~avGEGrerfg~~F~~D--------------------------- 135 (603)
T KOG0318|consen 86 WDTTQKEHILKNEFQVLAGPIKDISW---DFDSKRIAAVGEGRERFGHVFLWD--------------------------- 135 (603)
T ss_pred EeccCcceeeeeeeeeccccccccee---CCCCcEEEEEecCccceeEEEEec---------------------------
Confidence 999774433222 1222233445555 667777776542 34555666
Q ss_pred eeecccccceeeEEEEecccCCEEEEEEcCCCC-EEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEE
Q 000654 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (1371)
Q Consensus 237 i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~-~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~ 315 (1371)
++..+..+.||...|.++.|-|... +++|||+|.+|.+|+-..-+. + ..+..|..-|.++.
T Consensus 136 --------SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF---------k-~s~r~HskFV~~VR 197 (603)
T KOG0318|consen 136 --------SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF---------K-SSFREHSKFVNCVR 197 (603)
T ss_pred --------CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee---------e-ecccccccceeeEE
Confidence 3455678899999999999999776 599999999999998543322 2 47788999999999
Q ss_pred Ec--CCEEEEEeCCCeEEEEeC-CCcEEEEEe---eccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC-CCcccccCC
Q 000654 316 LT--DSFIITAGEDCTCRVWGS-DGKQLKMIK---EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESH 388 (1371)
Q Consensus 316 ~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~---~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~-~~~~~l~~~ 388 (1371)
|+ +..++|++.||++.+||- +|+.+..+. .|.+ .|.+++|+||+..++|++.|.+++|||+.. .+++++...
T Consensus 198 ysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 198 YSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred ECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence 99 589999999999999998 899999988 8999 799999999999999999999999999943 333333211
Q ss_pred CccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEE
Q 000654 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPII 468 (1371)
Q Consensus 389 ~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~ 468 (1371)
.. + ....+-|+ |- .+.++..+-.|.+..++..+.. -.++..+| ...|.
T Consensus 277 ~~---------v-----------------~dqqvG~l-Wq-kd~lItVSl~G~in~ln~~d~~---~~~~i~GH-nK~IT 324 (603)
T KOG0318|consen 277 ST---------V-----------------EDQQVGCL-WQ-KDHLITVSLSGTINYLNPSDPS---VLKVISGH-NKSIT 324 (603)
T ss_pred Cc---------h-----------------hceEEEEE-Ee-CCeEEEEEcCcEEEEecccCCC---hhheeccc-cccee
Confidence 10 0 01112222 33 4567777778888765554443 23566666 67888
Q ss_pred EEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEE
Q 000654 469 CMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLK 548 (1371)
Q Consensus 469 ~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~ 548 (1371)
++.+ .+++..|++|+.||.|.-|++.++...+.. ...+..++.++. ..+...+++.+.|.+++
T Consensus 325 aLtv--------~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~------g~~h~nqI~~~~---~~~~~~~~t~g~Dd~l~ 387 (603)
T KOG0318|consen 325 ALTV--------SPDGKTIYSGSYDGHINSWDSGSGTSDRLA------GKGHTNQIKGMA---ASESGELFTIGWDDTLR 387 (603)
T ss_pred EEEE--------cCCCCEEEeeccCceEEEEecCCccccccc------cccccceEEEEe---ecCCCcEEEEecCCeEE
Confidence 8888 456799999999999999999887644211 112233443322 12336789999999999
Q ss_pred EEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccc
Q 000654 549 LWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPL 628 (1371)
Q Consensus 549 lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~ 628 (1371)
+-++........ . .+..+++ -.+++..+++.++++.+..+-+.+=+.... ..+++.
T Consensus 388 ~~~~~~~~~t~~------~------~~~lg~Q--P~~lav~~d~~~avv~~~~~iv~l~~~~~~----------~~~~~~ 443 (603)
T KOG0318|consen 388 VISLKDNGYTKS------E------VVKLGSQ--PKGLAVLSDGGTAVVACISDIVLLQDQTKV----------SSIPIG 443 (603)
T ss_pred EEecccCccccc------c------eeecCCC--ceeEEEcCCCCEEEEEecCcEEEEecCCcc----------eeeccc
Confidence 998864432111 0 0111222 237888888888888887776665444321 111111
Q ss_pred cccccccCCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEecCCcceeeeeccccceeeeeEeEEcCCCccCcccceEE
Q 000654 629 NYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYA 708 (1371)
Q Consensus 629 ~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~l~v 708 (1371)
-.+++++++ +++.+++.||.||.+.+|.+..+++.-+-+ ....++.+..+.++ +++.+++
T Consensus 444 ---------y~~s~vAv~---~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~---~~~h~a~iT~vayS-----pd~~yla 503 (603)
T KOG0318|consen 444 ---------YESSAVAVS---PDGSEVAVGGQDGKVHVYSLSGDELKEEAK---LLEHRAAITDVAYS-----PDGAYLA 503 (603)
T ss_pred ---------cccceEEEc---CCCCEEEEecccceEEEEEecCCcccceee---eecccCCceEEEEC-----CCCcEEE
Confidence 346777777 678899999999999999999876532211 12225667777764 2467889
Q ss_pred EeecCccEEEEeCccceEEEEeeccCcccccccccCCCCCCceEEEEEeccEEEEEEeeeccCcCCccccccccCCCccc
Q 000654 709 AGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGRE 788 (1371)
Q Consensus 709 ~Gf~s~~fvvWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~fa~~k~~~i~i~~~~~~~~~~~~~~~~l~~~~Hgre 788 (1371)
+|-.++..++|+..+.+.- ..+..+|...
T Consensus 504 ~~Da~rkvv~yd~~s~~~~---------------------------------------------------~~~w~FHtak 532 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREVK---------------------------------------------------TNRWAFHTAK 532 (603)
T ss_pred EeccCCcEEEEEcccCcee---------------------------------------------------cceeeeeeee
Confidence 9999999999997665410 1223489999
Q ss_pred eeEeEeecccccccccccccCCCCCeEEEEccCCCeEEEEEecCCCCcccceeccccccCccceeeeeeecccccccccc
Q 000654 789 IHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVV 868 (1371)
Q Consensus 789 I~sv~~s~~~~~~~~~~~~~~~~~~~~iaTGseD~tIrl~~~~~~~~~~~~~~~l~~H~~gsav~~i~~~~~~~~~~~~~ 868 (1371)
|.||+++|+ .+++||||-|++|-||.+..- ...+...++|.. .|+.+.++
T Consensus 533 I~~~aWsP~---------------n~~vATGSlDt~Viiysv~kP---~~~i~iknAH~~--gVn~v~wl---------- 582 (603)
T KOG0318|consen 533 INCVAWSPN---------------NKLVATGSLDTNVIIYSVKKP---AKHIIIKNAHLG--GVNSVAWL---------- 582 (603)
T ss_pred EEEEEeCCC---------------ceEEEeccccceEEEEEccCh---hhheEecccccc--CceeEEEe----------
Confidence 999999977 679999999999999999752 334889999994 49999986
Q ss_pred cCCCccccccccccccCCCCEEEEEecccceEEEEEEE
Q 000654 869 DNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLR 906 (1371)
Q Consensus 869 ~~~~d~~~~d~~~~~~~~~~~ll~S~g~d~~i~vW~~~ 906 (1371)
+.--|+|.|.|..||+|.+.
T Consensus 583 ------------------de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 583 ------------------DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ------------------cCceEEeccCcceeEEeccc
Confidence 35679999999999999863
No 6
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-37 Score=355.46 Aligned_cols=559 Identities=18% Similarity=0.266 Sum_probs=408.8
Q ss_pred eEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe
Q 000654 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1371)
Q Consensus 89 ~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~ 168 (1371)
+.+++...-.|.+||++++. ....-.+..-...|++++-+| +..+||+|.+||.|+||+..++.
T Consensus 35 r~va~~a~E~vn~WdlRtge-------------~~~~l~~~~~k~evt~l~~~~---d~l~lAVGYaDGsVqif~~~s~~ 98 (888)
T KOG0306|consen 35 RAVAVSALEQVNIWDLRTGE-------------IEKKLILLKKKAEVTCLRSSD---DILLLAVGYADGSVQIFSLESEE 98 (888)
T ss_pred cEEEEeccccEeEEeeecch-------------hhhhhhhhcccceEEEeeccC---CcceEEEEecCceEEeeccCCCc
Confidence 67777788899999999853 111111122335799999888 88899999999999999999888
Q ss_pred EEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceee
Q 000654 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1371)
Q Consensus 169 ~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1371)
...++.+|.. .+..+.| +..|..|++|+.|+.|.+||+- ...-
T Consensus 99 ~~~tfngHK~-AVt~l~f---d~~G~rlaSGskDt~IIvwDlV---------------------------------~E~G 141 (888)
T KOG0306|consen 99 ILITFNGHKA-AVTTLKF---DKIGTRLASGSKDTDIIVWDLV---------------------------------GEEG 141 (888)
T ss_pred eeeeeccccc-ceEEEEE---cccCceEeecCCCccEEEEEec---------------------------------ccee
Confidence 7777777655 4556666 7789999999999999999998 4556
Q ss_pred EEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCC
Q 000654 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC 328 (1371)
Q Consensus 249 ~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg 328 (1371)
..++.||...|+..-|..+.++++++|.|..|++||+.+..+ .. +...|.+.||.+++.++.+++++.|+
T Consensus 142 l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC-----f~-----Thvd~r~Eiw~l~~~~~~lvt~~~ds 211 (888)
T KOG0306|consen 142 LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC-----FE-----THVDHRGEIWALVLDEKLLVTAGTDS 211 (888)
T ss_pred eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee-----ee-----EEecccceEEEEEEecceEEEEecCC
Confidence 788999999999999999899999999999999999999766 33 88899999999999999999999999
Q ss_pred eEEEEeC--C--C---------cEEEE-EeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-C--------cccc
Q 000654 329 TCRVWGS--D--G---------KQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-L--------PGSL 385 (1371)
Q Consensus 329 ~I~VWd~--~--g---------~~l~~-l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~-~--------~~~l 385 (1371)
.++||++ . . +...+ .+.-.++ .-.++..+++++|+.-|.|..+.++.+... . ++..
T Consensus 212 e~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R-~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~ 290 (888)
T KOG0306|consen 212 ELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGR-EINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRA 290 (888)
T ss_pred ceEEEEeecccccccccccceeeccceeeeccCCc-eeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHh
Confidence 9999998 1 1 11112 2223443 445666778889999999999999988321 0 0000
Q ss_pred cCCCc------cc-------------------------cc------------cCCccEEEeee--cCCc----cceeecc
Q 000654 386 ESHPE------AK-------------------------EF------------NGRTEIFSIKI--PNFS----EQIRLTD 416 (1371)
Q Consensus 386 ~~~~~------~~-------------------------~~------------~~~~~i~s~~~--~~~~----~~~~~~~ 416 (1371)
..+.. .+ .. +...+.+++.. +..+ .......
T Consensus 291 Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~ 370 (888)
T KOG0306|consen 291 KKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIG 370 (888)
T ss_pred hhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeec
Confidence 00000 00 00 01111122211 0000 1123445
Q ss_pred CCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcE
Q 000654 417 SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNM 496 (1371)
Q Consensus 417 ~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I 496 (1371)
+|...|++++++.+..+++++..+.+. +|+..+.++ +.....+ -+.+..+ .|.++++++|...|.+
T Consensus 371 GHR~dVRsl~vS~d~~~~~Sga~~Sik---iWn~~t~kc--iRTi~~~-y~l~~~F--------vpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 371 GHRSDVRSLCVSSDSILLASGAGESIK---IWNRDTLKC--IRTITCG-YILASKF--------VPGDRYIVLGTKNGEL 436 (888)
T ss_pred cchhheeEEEeecCceeeeecCCCcEE---EEEccCcce--eEEeccc-cEEEEEe--------cCCCceEEEeccCCce
Confidence 888999999999998888888888887 455544443 3344433 3333333 3668999999999999
Q ss_pred EEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeee
Q 000654 497 TIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFS 576 (1371)
Q Consensus 497 ~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~ 576 (1371)
.+||+......... ..+++.+.. +..+||++.+++++.|.+|++|++..... .+......+.+.+.-.
T Consensus 437 ~vfdlaS~~l~Eti-------~AHdgaIWs--i~~~pD~~g~vT~saDktVkfWdf~l~~~---~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 437 QVFDLASASLVETI-------RAHDGAIWS--ISLSPDNKGFVTGSADKTVKFWDFKLVVS---VPGTQKKVLSLKHTRT 504 (888)
T ss_pred EEEEeehhhhhhhh-------hccccceee--eeecCCCCceEEecCCcEEEEEeEEEEec---cCcccceeeeeccceE
Confidence 99999876654321 123343333 35679999999999999999999864322 1111112244444434
Q ss_pred cccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccccccccccCCcCeEEEEEeecCCCceEEE
Q 000654 577 SCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIR 656 (1371)
Q Consensus 577 ~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L~ 656 (1371)
......|.|+.+||||++||+|--|.+++||-+++-. ..-.+. .|. -+|.++.++ +|+..++
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-------------FflsLY-GHk-LPV~smDIS---~DSkliv 566 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-------------FFLSLY-GHK-LPVLSMDIS---PDSKLIV 566 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-------------eeeeec-ccc-cceeEEecc---CCcCeEE
Confidence 4567789999999999999999999999999988631 112222 344 799999999 7789999
Q ss_pred EEcCCCcEEEEEEecCCcceeeeeccccceeeeeEeEEcCCCccCcccceEEEeecCccEEEEeCccceEEEEeeccCcc
Q 000654 657 STGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWR 736 (1371)
Q Consensus 657 T~g~DG~v~iw~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~l~v~Gf~s~~fvvWn~~~~~el~~i~CGG~h 736 (1371)
|||.|..|++|-++.+.+ |
T Consensus 567 TgSADKnVKiWGLdFGDC-------------------------------------------------------------H 585 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGDC-------------------------------------------------------------H 585 (888)
T ss_pred eccCCCceEEeccccchh-------------------------------------------------------------h
Confidence 999999999999876532 1
Q ss_pred cccccccCCCCCCceEEEEEeccEEEEEEeeeccCcCCccccccccCCCccceeEeEeecccccccccccccCCCCCeEE
Q 000654 737 RPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWI 816 (1371)
Q Consensus 737 R~w~~~~~~~~~~~~~fa~~k~~~i~i~~~~~~~~~~~~~~~~l~~~~HgreI~sv~~s~~~~~~~~~~~~~~~~~~~~i 816 (1371)
++. -+|...|.+|.|.|. .+++
T Consensus 586 KS~-------------------------------------------fAHdDSvm~V~F~P~---------------~~~F 607 (888)
T KOG0306|consen 586 KSF-------------------------------------------FAHDDSVMSVQFLPK---------------THLF 607 (888)
T ss_pred hhh-------------------------------------------hcccCceeEEEEccc---------------ceeE
Confidence 110 178999999999976 6899
Q ss_pred EEccCCCeEEEEEecCCCCcccceeccccccCccceeeeeeecccccccccccCCCccccccccccccCCCCEEEEEecc
Q 000654 817 ATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGA 896 (1371)
Q Consensus 817 aTGseD~tIrl~~~~~~~~~~~~~~~l~~H~~gsav~~i~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~ll~S~g~ 896 (1371)
.|+|.|+.|+-|+-.. ...+..|.+|. +-|++++.. +++.+++|+|-
T Consensus 608 Ft~gKD~kvKqWDg~k----Fe~iq~L~~H~--~ev~cLav~---------------------------~~G~~vvs~sh 654 (888)
T KOG0306|consen 608 FTCGKDGKVKQWDGEK----FEEIQKLDGHH--SEVWCLAVS---------------------------PNGSFVVSSSH 654 (888)
T ss_pred EEecCcceEEeechhh----hhhheeeccch--heeeeeEEc---------------------------CCCCeEEeccC
Confidence 9999999999998765 67899999999 999999984 24779999999
Q ss_pred cceEEEEEEEe
Q 000654 897 KRVLTSWLLRH 907 (1371)
Q Consensus 897 d~~i~vW~~~~ 907 (1371)
|..|++|.-.-
T Consensus 655 D~sIRlwE~td 665 (888)
T KOG0306|consen 655 DKSIRLWERTD 665 (888)
T ss_pred CceeEeeeccC
Confidence 99999997433
No 7
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=349.73 Aligned_cols=522 Identities=16% Similarity=0.197 Sum_probs=369.2
Q ss_pred ccEEEEeCCCCc---------ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEe
Q 000654 4 KDLSEWRLDVGQ---------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1371)
Q Consensus 4 ~tV~iWdl~~~~---------h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~ 73 (1371)
..|-+||++++. -..+|+|++-+ |+ ..+||+|. ||.|+||+..++..+.++.+|+. +|+.+.|
T Consensus 43 E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~--~d----~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~-AVt~l~f 115 (888)
T KOG0306|consen 43 EQVNIWDLRTGEIEKKLILLKKKAEVTCLRSS--DD----ILLLAVGYADGSVQIFSLESEEILITFNGHKA-AVTTLKF 115 (888)
T ss_pred ccEeEEeeecchhhhhhhhhcccceEEEeecc--CC----cceEEEEecCceEEeeccCCCceeeeeccccc-ceEEEEE
Confidence 357899999994 23589999999 88 78889999 89999999999999999999887 8999999
Q ss_pred eccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEE
Q 000654 74 NFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1371)
Q Consensus 74 s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Lat 152 (1371)
. ..| ..+++++ |+.|.+||+-.+ .-+..++||.+.|+..-|.. +...|++
T Consensus 116 d-------~~G----~rlaSGskDt~IIvwDlV~E---------------~Gl~rL~GHkd~iT~~~F~~---~~~~lvS 166 (888)
T KOG0306|consen 116 D-------KIG----TRLASGSKDTDIIVWDLVGE---------------EGLFRLRGHKDSITQALFLN---GDSFLVS 166 (888)
T ss_pred c-------ccC----ceEeecCCCccEEEEEeccc---------------eeeEEeecchHHHhHHhccC---CCeEEEE
Confidence 9 777 6777777 999999999752 34567889999999999987 7889999
Q ss_pred EECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000654 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1371)
Q Consensus 153 gs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1371)
.+.|+.|++||+.+..+..+.-. ++..+|++.+ ++..+++++.|+.+++|++....-....
T Consensus 167 ~sKDs~iK~WdL~tqhCf~Thvd-~r~Eiw~l~~-----~~~~lvt~~~dse~~v~~L~~~~D~~~~------------- 227 (888)
T KOG0306|consen 167 VSKDSMIKFWDLETQHCFETHVD-HRGEIWALVL-----DEKLLVTAGTDSELKVWELAFEDDEKET------------- 227 (888)
T ss_pred eccCceEEEEecccceeeeEEec-ccceEEEEEE-----ecceEEEEecCCceEEEEeecccccccc-------------
Confidence 99999999999999888777654 4556788877 2378999999999999999521100000
Q ss_pred CcceeeecccccceeeEEE-EecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCccc-------------CCC----
Q 000654 233 DFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK-------------DSD---- 294 (1371)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~-l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~-------------~~~---- 294 (1371)
+..+ +.+.... ...-.+..-.+...+++++++.-+.|..+.++.+...... ...
T Consensus 228 -~~~~-------s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~ 299 (888)
T KOG0306|consen 228 -NRYI-------STKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEEN 299 (888)
T ss_pred -cccc-------eeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccc
Confidence 0000 0111111 1122344455666778889999999999999998864321 000
Q ss_pred --Cce-----eeeceEeecCCccEEEEEEc-----CCEEEEEeCCCeEEEEeCC--CcE--------EEEEeeccCcCEE
Q 000654 295 --SIE-----EVGSSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGSD--GKQ--------LKMIKEHIGRGIW 352 (1371)
Q Consensus 295 --~~~-----~~~~~~~~gh~~~I~~l~~s-----~~~L~Sgs~Dg~I~VWd~~--g~~--------l~~l~~h~~~~V~ 352 (1371)
.+. ++.......-...|.++.+. ++.|++ -.+.++..|.++ ++. -..+.+|..+ |.
T Consensus 300 ~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~d-VR 377 (888)
T KOG0306|consen 300 EDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSD-VR 377 (888)
T ss_pred ccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhh-ee
Confidence 000 00000111123456666664 234555 667788888872 221 1356789985 99
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcC-CCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCC
Q 000654 353 RCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1371)
Q Consensus 353 sl~~spdg~~L~Tgg~Dg~I~lwdl~-~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~ 431 (1371)
+++++.+...+++| ..+.+++|+.. .++++++.. +++.+..|.|.+
T Consensus 378 sl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~--------------------------------~y~l~~~Fvpgd 424 (888)
T KOG0306|consen 378 SLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITC--------------------------------GYILASKFVPGD 424 (888)
T ss_pred EEEeecCceeeeec-CCCcEEEEEccCcceeEEecc--------------------------------ccEEEEEecCCC
Confidence 99999887666665 46699999995 355444321 368888899977
Q ss_pred cE-EEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccc-
Q 000654 432 TL-YIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ- 509 (1371)
Q Consensus 432 ~l-lv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~- 509 (1371)
++ ++++.+|.+..+++....... ..+ .+...|+.++. .+++.-+++|+.|.+|++|++.--...+.
T Consensus 425 ~~Iv~G~k~Gel~vfdlaS~~l~E---ti~-AHdgaIWsi~~--------~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 425 RYIVLGTKNGELQVFDLASASLVE---TIR-AHDGAIWSISL--------SPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred ceEEEeccCCceEEEEeehhhhhh---hhh-ccccceeeeee--------cCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 64 556678999887776654322 233 45778888887 46678899999999999999742111110
Q ss_pred ----eeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEE
Q 000654 510 ----LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMC 585 (1371)
Q Consensus 510 ----~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Its 585 (1371)
......-..+-+..+++ +..|||+++|+.+--|.++++|-++.-. +--. ..+|..+|.|
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~--v~~Spdgk~LaVsLLdnTVkVyflDtlK--------------Ffls-LYGHkLPV~s 555 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLC--VSVSPDGKLLAVSLLDNTVKVYFLDTLK--------------FFLS-LYGHKLPVLS 555 (888)
T ss_pred cceeeeeccceEEeccccEEE--EEEcCCCcEEEEEeccCeEEEEEeccee--------------eeee-ecccccceeE
Confidence 11111111112223333 4678999999999999999999887532 1111 3589999999
Q ss_pred EEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccccccccccCCcCeEEEEEeecCCCceEEEEEcCCCcEE
Q 000654 586 LDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCIC 665 (1371)
Q Consensus 586 l~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~g~DG~v~ 665 (1371)
++.|||++++++|+.|.+|+||-++-+. + ...++ +|. +.|++|.|. |....++|+|+||.|+
T Consensus 556 mDIS~DSklivTgSADKnVKiWGLdFGD--------C-----HKS~f-AHd-DSvm~V~F~---P~~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 556 MDISPDSKLIVTGSADKNVKIWGLDFGD--------C-----HKSFF-AHD-DSVMSVQFL---PKTHLFFTCGKDGKVK 617 (888)
T ss_pred EeccCCcCeEEeccCCCceEEeccccch--------h-----hhhhh-ccc-CceeEEEEc---ccceeEEEecCcceEE
Confidence 9999999999999999999999877431 1 11222 666 899999999 4567899999999999
Q ss_pred EEEEe
Q 000654 666 YLEYD 670 (1371)
Q Consensus 666 iw~l~ 670 (1371)
.||-+
T Consensus 618 qWDg~ 622 (888)
T KOG0306|consen 618 QWDGE 622 (888)
T ss_pred eechh
Confidence 99843
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=334.90 Aligned_cols=558 Identities=14% Similarity=0.179 Sum_probs=403.9
Q ss_pred ccEEEEeCCCCc-------ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeec
Q 000654 4 KDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF 75 (1371)
Q Consensus 4 ~tV~iWdl~~~~-------h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~ 75 (1371)
+.|.++|+++.+ +.+-|++++.+ |+ |.+|++-. .|...+-++.....++.+. ++. +|.+|.||
T Consensus 35 Nrvsv~dLknN~S~Tl~~e~~~NI~~ialS--p~----g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~-~v~~i~fS- 105 (893)
T KOG0291|consen 35 NRVSVFDLKNNKSYTLPLETRYNITRIALS--PD----GTLLLAVDERGRALLVSLLSRSVLHRFN-FKR-GVGAIKFS- 105 (893)
T ss_pred CEEEEEEccCCcceeEEeecCCceEEEEeC--CC----ceEEEEEcCCCcEEEEecccceeeEEEe-ecC-ccceEEEC-
Confidence 568999999865 56789999999 99 77777766 5888899998888888887 455 79999999
Q ss_pred cccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC
Q 000654 76 INCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1371)
Q Consensus 76 ~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~ 155 (1371)
|+| .++|++-++-+.||..-... ..++.| +.+.++..+|.+.|.++.|+. |.++|++|+.
T Consensus 106 ------Png----~~fav~~gn~lqiw~~P~~~--~~~~~p-----Fvl~r~~~g~fddi~si~Ws~---DSr~l~~gsr 165 (893)
T KOG0291|consen 106 ------PNG----KFFAVGCGNLLQIWHAPGEI--KNEFNP-----FVLHRTYLGHFDDITSIDWSD---DSRLLVTGSR 165 (893)
T ss_pred ------CCC----cEEEEEecceeEEEecCcch--hcccCc-----ceEeeeecCCccceeEEEecc---CCceEEeccc
Confidence 999 79999999999999986432 224555 778888999999999999998 9999999999
Q ss_pred CCcEEEEECCCCeE--EEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCC-CC---CCCCCCC
Q 000654 156 DNSIRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN-SP---EGNHAHG 229 (1371)
Q Consensus 156 Dg~I~vWd~~~~~~--~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~-~~---~~~s~~~ 229 (1371)
|-++++|++...+. ...+.+|...++-+ .| ..+...+++-+.||.+.+|.+... |... .. ..++.+.
T Consensus 166 D~s~rl~~v~~~k~~~~~~l~gHkd~Vvac-fF---~~~~~~l~tvskdG~l~~W~~~~~---P~~~~~~~kd~eg~~d~ 238 (893)
T KOG0291|consen 166 DLSARLFGVDGNKNLFTYALNGHKDYVVAC-FF---GANSLDLYTVSKDGALFVWTCDLR---PPELDKAEKDEEGSDDE 238 (893)
T ss_pred cceEEEEEeccccccceEeccCCCcceEEE-Ee---ccCcceEEEEecCceEEEEEecCC---Ccccccccccccccccc
Confidence 99999999976655 34445555544433 23 567778999999999999998721 1111 00 0001111
Q ss_pred CCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCc
Q 000654 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1371)
Q Consensus 230 ~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~ 309 (1371)
....++.-+.-.........+-+......|++.+|++.-..|+++-..|...++++..... +. .+.--..
T Consensus 239 ~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l-----ih-----~LSis~~ 308 (893)
T KOG0291|consen 239 EMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL-----IH-----SLSISDQ 308 (893)
T ss_pred cccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE-----EE-----Eeecccc
Confidence 1111111011000001111222333447899999999999999999999999999988654 22 3333456
Q ss_pred cEEEEEEc--CCEEEEEeCC-CeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC-CCCccc
Q 000654 310 RVWDCCLT--DSFIITAGED-CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGS 384 (1371)
Q Consensus 310 ~I~~l~~s--~~~L~Sgs~D-g~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~-~~~~~~ 384 (1371)
+|..++|+ +.+|+.|+.. |.+.||+. ...-+...++|.. .+++++++|||+++|||+.||.|++||.. +-|+.+
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT 387 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT 387 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE
Confidence 79999998 8999988755 89999999 6666777889998 59999999999999999999999999984 333333
Q ss_pred ccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEE-EcCCcEEEEEeecCCCceeEEeEeecC
Q 000654 385 LESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSE 463 (1371)
Q Consensus 385 l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~-t~~G~i~~~~l~~~~~~~w~~i~~~~~ 463 (1371)
+..|+..|+.+.|+..++.+++ +-+|.+..|++...++ -+-++.+.
T Consensus 388 ------------------------------FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN---fRTft~P~ 434 (893)
T KOG0291|consen 388 ------------------------------FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN---FRTFTSPE 434 (893)
T ss_pred ------------------------------eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce---eeeecCCC
Confidence 3456678999999999976665 4589888776655444 33455666
Q ss_pred CccEEEEeecCCCCCCCCCCCCEEEEEeCCC-cEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEc
Q 000654 464 GMPIICMDLLSNEPKYPCGIDDWVALGDGKG-NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD 542 (1371)
Q Consensus 464 ~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG-~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s 542 (1371)
+....|+++.++ +.++..|+.|. .|.+|++++|+.+.. -.++++.+.+ +++++.+..|++++
T Consensus 435 p~QfscvavD~s--------GelV~AG~~d~F~IfvWS~qTGqllDi-------LsGHEgPVs~--l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 435 PIQFSCVAVDPS--------GELVCAGAQDSFEIFVWSVQTGQLLDI-------LSGHEGPVSG--LSFSPDGSLLASGS 497 (893)
T ss_pred ceeeeEEEEcCC--------CCEEEeeccceEEEEEEEeecCeeeeh-------hcCCCCccee--eEEccccCeEEecc
Confidence 777788877443 57888888776 899999999886532 2234444433 57899999999999
Q ss_pred CCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcccccccccccc
Q 000654 543 PKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALH 622 (1371)
Q Consensus 543 ~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~ 622 (1371)
.|.+|++|++=.... +. .+ ..+...++.++|.|||+-||+++-||.|.+||......... ....
T Consensus 498 WDkTVRiW~if~s~~----------~v---Et--l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~-Idgr 561 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSG----------TV---ET--LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS-IDGR 561 (893)
T ss_pred ccceEEEEEeeccCc----------ee---ee--EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc-ccch
Confidence 999999999864311 11 12 23455699999999999999999999999999987532100 0000
Q ss_pred ccccccc----cccc---ccCCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEecCCcceee
Q 000654 623 VEVSPLN----YFKG---AHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEF 678 (1371)
Q Consensus 623 ~~l~p~~----~~~g---~hg~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~~~~~~~~ 678 (1371)
..+.++. .+.. +.+ .+.|.|+++ .|+..|+++|.-..||+|++..+.+...|
T Consensus 562 kD~~~gR~~~D~~ta~~sa~~-K~Ftti~yS---aDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 562 KDLSGGRKETDRITAENSAKG-KTFTTICYS---ADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred hhccccccccceeehhhcccC-CceEEEEEc---CCCCEEEecCCcccEEEEECchhheeeeE
Confidence 1111111 1111 222 678999888 78899999999999999999887554333
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-37 Score=333.09 Aligned_cols=319 Identities=20% Similarity=0.287 Sum_probs=274.1
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|.++|.|++|+ |+ +..|++|+ |.++|+||+.+..++++.++|.. -|.+++|+ ||| ..||++
T Consensus 114 H~e~Vl~~~fs--p~----g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~-WVlcvaws-------PDg----k~iASG 175 (480)
T KOG0271|consen 114 HGEAVLSVQFS--PT----GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN-WVLCVAWS-------PDG----KKIASG 175 (480)
T ss_pred CCCcEEEEEec--CC----CceEEecCCCceEEeeccCCCCcceeecCCcc-EEEEEEEC-------CCc----chhhcc
Confidence 88999999999 99 89999999 69999999999999999999876 89999999 999 677776
Q ss_pred C-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeec--CCCcEEEEEECCCcEEEEECCCCeEEE
Q 000654 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC--NGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1371)
Q Consensus 95 g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~--~dg~~Latgs~Dg~I~vWd~~~~~~~~ 171 (1371)
. +|+|++||..++. .....|++|..||++++|.|.. +...+||+++.||+|+|||+..++++.
T Consensus 176 ~~dg~I~lwdpktg~--------------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~ 241 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQ--------------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR 241 (480)
T ss_pred ccCCeEEEecCCCCC--------------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE
Confidence 6 9999999998744 4566789999999999998743 356799999999999999999999998
Q ss_pred EEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEE
Q 000654 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1371)
Q Consensus 172 ~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~ 251 (1371)
.+.+|.. .+.++++ ....++++|+.|++|++|+.. .+..+..
T Consensus 242 ~lsgHT~-~VTCvrw----GG~gliySgS~DrtIkvw~a~---------------------------------dG~~~r~ 283 (480)
T KOG0271|consen 242 TLSGHTA-SVTCVRW----GGEGLIYSGSQDRTIKVWRAL---------------------------------DGKLCRE 283 (480)
T ss_pred EeccCcc-ceEEEEE----cCCceEEecCCCceEEEEEcc---------------------------------chhHHHh
Confidence 8877755 4566765 234699999999999999988 5778888
Q ss_pred EecccCCEEEEEEc-----------CCC-------------------------CEEEEEeCCCcEEEEEccCCcccCCCC
Q 000654 252 LVGHEGSIFRIEWS-----------SCG-------------------------SKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1371)
Q Consensus 252 l~gH~~~I~~v~~s-----------pdg-------------------------~~LaS~s~Dg~VriWdl~~~~~~~~~~ 295 (1371)
+.||..+|+.++.+ |.+ ..|+||++|.++.+|+....+.+
T Consensus 284 lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp---- 359 (480)
T KOG0271|consen 284 LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP---- 359 (480)
T ss_pred hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc----
Confidence 99999999999876 223 35999999999999998765431
Q ss_pred ceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcE
Q 000654 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1371)
Q Consensus 296 ~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I 372 (1371)
+. ...||...|..+.|+ +.++|+|+.|..|++|+. +|+.+.+|++|-+ +|+.++|+.|.++|++|+.|.++
T Consensus 360 i~-----rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~-~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 360 IT-----RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA-AVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred hh-----hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-eeEEEEeccCccEEEEcCCCceE
Confidence 22 788999999999999 489999999999999999 9999999999999 79999999999999999999999
Q ss_pred EEEEcCCC-CcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEE
Q 000654 373 KVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYH 444 (1371)
Q Consensus 373 ~lwdl~~~-~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~ 444 (1371)
++|+++.+ +... +.+|...|.++.|+|||..+++++..++++
T Consensus 434 Kvw~V~tkKl~~D------------------------------LpGh~DEVf~vDwspDG~rV~sggkdkv~~ 476 (480)
T KOG0271|consen 434 KVWDVRTKKLKQD------------------------------LPGHADEVFAVDWSPDGQRVASGGKDKVLR 476 (480)
T ss_pred EEEEeeeeeeccc------------------------------CCCCCceEEEEEecCCCceeecCCCceEEE
Confidence 99999542 2222 335667899999999999999987777653
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-37 Score=329.53 Aligned_cols=327 Identities=17% Similarity=0.267 Sum_probs=271.4
Q ss_pred EEEEeecCccEEEEEeeccccccCCCCcceeeEEEE-ECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEE
Q 000654 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1371)
Q Consensus 58 ~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~-~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~ 136 (1371)
..+.+|.+ +|.+++|+ |+| ..+++ +||.++|+||+.+ ..+..+.++|..||.
T Consensus 109 sS~~GH~e-~Vl~~~fs-------p~g----~~l~tGsGD~TvR~WD~~T---------------eTp~~t~KgH~~WVl 161 (480)
T KOG0271|consen 109 SSIAGHGE-AVLSVQFS-------PTG----SRLVTGSGDTTVRLWDLDT---------------ETPLFTCKGHKNWVL 161 (480)
T ss_pred cccCCCCC-cEEEEEec-------CCC----ceEEecCCCceEEeeccCC---------------CCcceeecCCccEEE
Confidence 44556665 89999999 998 45555 5699999999987 457788999999999
Q ss_pred EEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeec--cCCCCcEEEEEeCCCeEEEEEcccCC
Q 000654 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG--DNLEALRIASGTIYNEIIVWKVDWEH 214 (1371)
Q Consensus 137 ~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~--~s~d~~~Lasgs~dg~I~vWd~~~~~ 214 (1371)
|++|+| ||..||+|+.||+|++||..+|+.+..-...++..+.++++.+ ..|...+||+++.||.|+|||+.
T Consensus 162 cvawsP---Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~--- 235 (480)
T KOG0271|consen 162 CVAWSP---DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK--- 235 (480)
T ss_pred EEEECC---CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc---
Confidence 999999 9999999999999999999999887665555666788888755 34667799999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCC
Q 000654 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (1371)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~ 294 (1371)
.+..+..+.||+.+|+||.|--+ .+++|+|.|++|++|+...+..
T Consensus 236 ------------------------------~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~---- 280 (480)
T KOG0271|consen 236 ------------------------------LGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKL---- 280 (480)
T ss_pred ------------------------------CceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhH----
Confidence 67788899999999999999644 4899999999999999998766
Q ss_pred CceeeeceEeecCCccEEEEEEc-------------CC-------------------------EEEEEeCCCeEEEEeC-
Q 000654 295 SIEEVGSSVLYGHNARVWDCCLT-------------DS-------------------------FIITAGEDCTCRVWGS- 335 (1371)
Q Consensus 295 ~~~~~~~~~~~gh~~~I~~l~~s-------------~~-------------------------~L~Sgs~Dg~I~VWd~- 335 (1371)
.+ .+.||..+|+.++.+ +. .|++|+.|.++.+|+.
T Consensus 281 -~r-----~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 281 -CR-----ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred -HH-----hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence 33 889999999999876 22 4999999999999998
Q ss_pred -CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc-CCCCcccccCCCccccccCCccEEEeeecCCcccee
Q 000654 336 -DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (1371)
Q Consensus 336 -~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl-~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~ 413 (1371)
..+++..+.+|.. -|..+.|+||++++|+++.|..|++|+- +|+.+.++.+|
T Consensus 355 ~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH------------------------- 408 (480)
T KOG0271|consen 355 KSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH------------------------- 408 (480)
T ss_pred ccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc-------------------------
Confidence 6778999999999 5999999999999999999999999998 45655555544
Q ss_pred eccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCC
Q 000654 414 LTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGK 493 (1371)
Q Consensus 414 ~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~d 493 (1371)
-..|..++|+.|.+++++++.... +++|+.+..+-..-+.+ +..+++++|. ++++..++.|..|
T Consensus 409 -----v~~VYqvawsaDsRLlVS~SkDsT--LKvw~V~tkKl~~DLpG-h~DEVf~vDw--------spDG~rV~sggkd 472 (480)
T KOG0271|consen 409 -----VAAVYQVAWSADSRLLVSGSKDST--LKVWDVRTKKLKQDLPG-HADEVFAVDW--------SPDGQRVASGGKD 472 (480)
T ss_pred -----cceeEEEEeccCccEEEEcCCCce--EEEEEeeeeeecccCCC-CCceEEEEEe--------cCCCceeecCCCc
Confidence 467999999999999998765442 24555554332111222 5788999988 5778999999999
Q ss_pred CcEEEEE
Q 000654 494 GNMTIVR 500 (1371)
Q Consensus 494 G~I~iwd 500 (1371)
..+++|.
T Consensus 473 kv~~lw~ 479 (480)
T KOG0271|consen 473 KVLRLWR 479 (480)
T ss_pred eEEEeec
Confidence 9999985
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-31 Score=311.93 Aligned_cols=468 Identities=14% Similarity=0.200 Sum_probs=354.2
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCC--------eEEEEEEeecCccEEEEEeeccccccCCCCcce
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG--------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg--------~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~ 87 (1371)
...+|.|+.|| || ++++|+|.++.+.||..... .+.+++.+|-+ .|.+|.|+ .|.
T Consensus 95 fk~~v~~i~fS--Pn----g~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fd-di~si~Ws-------~DS--- 157 (893)
T KOG0291|consen 95 FKRGVGAIKFS--PN----GKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFD-DITSIDWS-------DDS--- 157 (893)
T ss_pred ecCccceEEEC--CC----CcEEEEEecceeEEEecCcchhcccCcceEeeeecCCcc-ceeEEEec-------cCC---
Confidence 46789999999 99 99999999999999987432 23344555544 79999999 776
Q ss_pred eeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCC
Q 000654 88 TFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1371)
Q Consensus 88 ~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~ 166 (1371)
++|++++ |.+++||.++... .-....+.+|.+.|-++-|.. +...++|-+.||.+.+|....
T Consensus 158 -r~l~~gsrD~s~rl~~v~~~k-------------~~~~~~l~gHkd~VvacfF~~---~~~~l~tvskdG~l~~W~~~~ 220 (893)
T KOG0291|consen 158 -RLLVTGSRDLSARLFGVDGNK-------------NLFTYALNGHKDYVVACFFGA---NSLDLYTVSKDGALFVWTCDL 220 (893)
T ss_pred -ceEEeccccceEEEEEecccc-------------ccceEeccCCCcceEEEEecc---CcceEEEEecCceEEEEEecC
Confidence 6777755 9999999998533 223567889999999999988 888899999999999998761
Q ss_pred -----------------------CeE-----E-EE----EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccC
Q 000654 167 -----------------------SSI-----I-LE----VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1371)
Q Consensus 167 -----------------------~~~-----~-~~----l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~ 213 (1371)
++. . .. +.......+.+.+| .+....||+|-..|...++.+.
T Consensus 221 ~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f---H~~t~~lvvgFssG~f~LyelP-- 295 (893)
T KOG0291|consen 221 RPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF---HKGTNLLVVGFSSGEFGLYELP-- 295 (893)
T ss_pred CCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec---cCCceEEEEEecCCeeEEEecC--
Confidence 000 0 00 00111233444555 5567889999999999999988
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC-CCcEEEEEccCCcccC
Q 000654 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKD 292 (1371)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-Dg~VriWdl~~~~~~~ 292 (1371)
....++.+.--..+|..++|+..|.+||.|+. -|.+-+|+......
T Consensus 296 -------------------------------~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-- 342 (893)
T KOG0291|consen 296 -------------------------------DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-- 342 (893)
T ss_pred -------------------------------CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce--
Confidence 67788888877889999999999999998765 48999999987654
Q ss_pred CCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECC
Q 000654 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1371)
Q Consensus 293 ~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~D 369 (1371)
+ ...+||..++.+++++ ++++|||++||.|+|||. .|-|+.+|..|.. +|+.+.|+..++.|++.+-|
T Consensus 343 ---V-----lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 343 ---V-----LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-GVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred ---e-----eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC-ceEEEEEEecCCEEEEeecC
Confidence 2 3678999999999999 479999999999999999 8999999999999 79999999999999999999
Q ss_pred CcEEEEEcC-CCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEee
Q 000654 370 SAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLC 448 (1371)
Q Consensus 370 g~I~lwdl~-~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~ 448 (1371)
|+||.||+. .++.+++.... .-...|++..|.|.+++++... .+.+.+|
T Consensus 414 GtVRAwDlkRYrNfRTft~P~-----------------------------p~QfscvavD~sGelV~AG~~d-~F~IfvW 463 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPE-----------------------------PIQFSCVAVDPSGELVCAGAQD-SFEIFVW 463 (893)
T ss_pred CeEEeeeecccceeeeecCCC-----------------------------ceeeeEEEEcCCCCEEEeeccc-eEEEEEE
Confidence 999999994 34444443221 1135688888888777766544 3456688
Q ss_pred cCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEE
Q 000654 449 DMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTY 528 (1371)
Q Consensus 449 ~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~ 528 (1371)
+.++++-..++.+| ..||.++.+ .+.+..|++|+-|.+|++|++-...... .... ..+..+ -
T Consensus 464 S~qTGqllDiLsGH-EgPVs~l~f--------~~~~~~LaS~SWDkTVRiW~if~s~~~v-----Etl~--i~sdvl--~ 525 (893)
T KOG0291|consen 464 SVQTGQLLDILSGH-EGPVSGLSF--------SPDGSLLASGSWDKTVRIWDIFSSSGTV-----ETLE--IRSDVL--A 525 (893)
T ss_pred EeecCeeeehhcCC-CCcceeeEE--------ccccCeEEeccccceEEEEEeeccCcee-----eeEe--ecccee--E
Confidence 88888877788887 578888766 3557899999999999999986432110 1111 112222 3
Q ss_pred EeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCc-----cceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCe
Q 000654 529 WCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSK-----TNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGN 603 (1371)
Q Consensus 529 ~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~-----~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGt 603 (1371)
+.++|+|+-|+++.-||.|.+||+.........+... +.................+.++||+||..|+.|+....
T Consensus 526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~ 605 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS 605 (893)
T ss_pred EEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc
Confidence 5789999999999999999999998655432221100 00000000001234678999999999999999999999
Q ss_pred EEEEEcCcc
Q 000654 604 LVLFPLLRD 612 (1371)
Q Consensus 604 I~Iwd~~~~ 612 (1371)
|+||++.++
T Consensus 606 iCiY~v~~~ 614 (893)
T KOG0291|consen 606 ICIYDVPEG 614 (893)
T ss_pred EEEEECchh
Confidence 999999875
No 12
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.2e-32 Score=317.90 Aligned_cols=671 Identities=14% Similarity=0.156 Sum_probs=417.6
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCC
Q 000654 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1371)
Q Consensus 35 ~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~ 114 (1371)
+.+++.|.+..|.+||..+...+..+.+|.. +|.|+.+- |+......++....|+.|.+|.++.+.
T Consensus 25 ~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a-~VnC~~~l-------~~s~~~a~~vsG~sD~~v~lW~l~~~~------ 90 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKILIVTTLDGHVA-RVNCVHWL-------PTSEIVAEMVSGDSDGRVILWKLRDEY------ 90 (764)
T ss_pred cceEEecCCceEEEeCcccceeEEeccCCcc-ceEEEEEc-------ccccccceEEEccCCCcEEEEEEeehh------
Confidence 4788889999999999988877788888877 89999998 554211234444559999999998533
Q ss_pred CCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe--EEEEEecCC-cceEEEEEeeccCC
Q 000654 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPE-RCLLYSMKLWGDNL 191 (1371)
Q Consensus 115 ~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~--~~~~l~~~~-~~~v~s~~~~~~s~ 191 (1371)
+..+.++.+|...+.|+.=.+ ....+...|+++.+||.+..+ +...+.-.. ..+..++++.+ .+
T Consensus 91 -------~~~i~~~~g~~~~~~cv~a~~-----~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~ 157 (764)
T KOG1063|consen 91 -------LIKIYTIQGHCKECVCVVARS-----SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NN 157 (764)
T ss_pred -------eEEEEeecCcceeEEEEEeee-----eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cC
Confidence 677788888766665554332 222223689999999995554 122222111 11223333333 34
Q ss_pred CCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC---
Q 000654 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG--- 268 (1371)
Q Consensus 192 d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg--- 268 (1371)
+.-+++.|+.+..|.++.-.. .+...+..+.||+++|.+|+|...+
T Consensus 158 ~~~lla~Ggs~~~v~~~s~~~-------------------------------d~f~~v~el~GH~DWIrsl~f~~~~~~~ 206 (764)
T KOG1063|consen 158 KTFLLACGGSKFVVDLYSSSA-------------------------------DSFARVAELEGHTDWIRSLAFARLGGDD 206 (764)
T ss_pred CcEEEEecCcceEEEEeccCC-------------------------------cceeEEEEeeccchhhhhhhhhccCCCc
Confidence 444566677777777776440 1466788899999999999998644
Q ss_pred CEEEEEeCCCcEEEEEccCCcccC------------CC----Cceeee-----ceEeecCCccEEEEEEcC--CEEEEEe
Q 000654 269 SKLVSVSDDRSARIWEVRAEYWKD------------SD----SIEEVG-----SSVLYGHNARVWDCCLTD--SFIITAG 325 (1371)
Q Consensus 269 ~~LaS~s~Dg~VriWdl~~~~~~~------------~~----~~~~~~-----~~~~~gh~~~I~~l~~s~--~~L~Sgs 325 (1371)
-+|+|+|.|+.||||.+.-..... .. ....+. -..+.||..+|+++.|++ ..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 489999999999999987543110 00 010110 024569999999999994 4799999
Q ss_pred CCCeEEEEeCC---CcEEE-----EEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCC
Q 000654 326 EDCTCRVWGSD---GKQLK-----MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397 (1371)
Q Consensus 326 ~Dg~I~VWd~~---g~~l~-----~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~ 397 (1371)
.|.++.+|..+ |--+. .+.+..+ +.++..|+|+++.+++-|.-|..++|....
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~-GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d------------------ 347 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAG-GFWGGLWSPNSNVIIAHGRTGGFHLWKTKD------------------ 347 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeeccccccc-ceeeEEEcCCCCEEEEecccCcEEEEeccC------------------
Confidence 99999999982 22222 2222333 699999999999999999999999998421
Q ss_pred ccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeec-CCccEEEEeecCCC
Q 000654 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNE 476 (1371)
Q Consensus 398 ~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~-~~~~I~~ld~~~~~ 476 (1371)
...+.. .....+|...|++++|.|.|.+|++++..+..++.....+...|.++.+.+ +++.+.|+.+.+.
T Consensus 348 ~~~w~~--------~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~- 418 (764)
T KOG1063|consen 348 KTFWTQ--------EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE- 418 (764)
T ss_pred ccceee--------ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-
Confidence 111111 112347888999999999999988876665544322222334488886644 5788888877542
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEEEcCCccccc---eeeeeeec-cCcccceeEEEEeecCCCcEEEE-EcCCCcE-EEE
Q 000654 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ---LSFTFTWS-AGIERQLLGTYWCKSLGHRFIFT-ADPKGRL-KLW 550 (1371)
Q Consensus 477 ~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~---~~~~~~~~-~~~~~~il~~~~~~s~d~~~L~s-~s~dg~I-~lW 550 (1371)
.-..++|..+..+|+|+....-.... ......-. ..+.+..+.. +-.|+ +-++- -..+|.. ..|
T Consensus 419 -------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~Vpa-LGLSn--Ka~~~~e~~~G~~~~~~ 488 (764)
T KOG1063|consen 419 -------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPA-LGLSN--KAFFPGETNTGGEAAVC 488 (764)
T ss_pred -------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccc-ccccC--CCCccccccccccccee
Confidence 34567777788899998753211100 00000000 0011111110 01111 11110 0111111 111
Q ss_pred -eCCCCCCccc------cccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCe-----EEEEEcCcccccccc
Q 000654 551 -QLCDPFSSVC------YESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGN-----LVLFPLLRDLLNDKS 618 (1371)
Q Consensus 551 -di~~~~~~~~------~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGt-----I~Iwd~~~~~~~~~~ 618 (1371)
.......... ........+-.+.....+|...|.|++.+|+++++|++++..+ |++|+..+-
T Consensus 489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W------ 562 (764)
T KOG1063|consen 489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW------ 562 (764)
T ss_pred eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch------
Confidence 1110000000 0001122222222334599999999999999999999998865 778887752
Q ss_pred cccccccccccccccccCCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEecCCcc-eeeeeccccceeeeeEeEEcCC
Q 000654 619 VALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRES-LEFIGMKQVKELSLIQSVSAEN 697 (1371)
Q Consensus 619 ~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~~~~~-~~~~~~~~v~~~~~v~~~~~~~ 697 (1371)
...+.+ . .|. -+||.+.|+ +|+.+|++.|||.++.+|+...+... ..|.. .+.+.+ +|=...|.|
T Consensus 563 -~~~~~L------~-~Hs-LTVT~l~FS---pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~-~k~HtR-IIWdcsW~p 628 (764)
T KOG1063|consen 563 -LQVQEL------E-GHS-LTVTRLAFS---PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC-LKAHTR-IIWDCSWSP 628 (764)
T ss_pred -hhhhee------c-ccc-eEEEEEEEC---CCCcEEEEeecCceEEeeeeecccchhhhhcc-ccccce-EEEEcccCc
Confidence 122222 2 344 689999999 78899999999999999998665322 11111 222323 332333332
Q ss_pred CccCcccceEEEeecCccEEEEeCccc--eEE---EEeeccCcccccccccCCCCCCc-eEEEEEeccEEEEEEeeeccC
Q 000654 698 NSIDLASCNYAAGFASTDFIIWNLITE--AKV---VQIPCGGWRRPHSYFLGDVPEIK-NCFAYVKDEVIHIHRHWISNG 771 (1371)
Q Consensus 698 ~~~~~~~~l~v~Gf~s~~fvvWn~~~~--~el---~~i~CGG~hR~w~~~~~~~~~~~-~~fa~~k~~~i~i~~~~~~~~ 771 (1371)
+ ..-++.+.+++.+++|.+... ..+ ..+.-+++--.-+|.+....|.. .+.++.+.|.|.+|+......
T Consensus 629 ---d--e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~ 703 (764)
T KOG1063|consen 629 ---D--EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHR 703 (764)
T ss_pred ---c--cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccc
Confidence 2 233899999999999998876 222 33444665555555555566665 667899999999999542221
Q ss_pred cCCc-----cccccccCCCccceeEeEeecccccccccccccCCCCCeEEEEccCCCeEEEEEec
Q 000654 772 ERKM-----FPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYS 831 (1371)
Q Consensus 772 ~~~~-----~~~~l~~~~HgreI~sv~~s~~~~~~~~~~~~~~~~~~~~iaTGseD~tIrl~~~~ 831 (1371)
+... ..+.-..++|...|+-+++.|. -+. +.....+..-|+.|++|.++||+++.
T Consensus 704 ~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~---~~~--~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 704 QVTVGTFNLDTRLCATIGPDSAVNRLLWRPT---CSD--DWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccceeeeeccccccccChHHhhheeEeccc---ccc--ccccccceeEEeeecccceeEEeecc
Confidence 1111 1233345688899999999964 110 01122445678999999999998864
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.7e-35 Score=320.01 Aligned_cols=278 Identities=22% Similarity=0.342 Sum_probs=253.1
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g 95 (1371)
.+||..+.|+ +| +..|++|+ +|.++||+..+...+.++.+|.. .|.++.|+ |..+ +..+|+++
T Consensus 175 ~rPis~~~fS--~d----s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~-~v~~~~fh-------P~~~--~~~lat~s 238 (459)
T KOG0272|consen 175 TRPISGCSFS--RD----SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS-RVGAAVFH-------PVDS--DLNLATAS 238 (459)
T ss_pred CCcceeeEee--cC----CCeEEEeecCCceeEeecCCcceeEEEecccc-ceeeEEEc-------cCCC--ccceeeec
Confidence 4789999999 88 78999999 99999999999999999999887 89999999 6520 15666666
Q ss_pred -CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEe
Q 000654 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1371)
Q Consensus 96 -d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~ 174 (1371)
||++++|+++. -.++..+.+|...|..++|+| +|++|+|++.|.+-++||+.++..+....
T Consensus 239 ~Dgtvklw~~~~---------------e~~l~~l~gH~~RVs~VafHP---sG~~L~TasfD~tWRlWD~~tk~ElL~QE 300 (459)
T KOG0272|consen 239 ADGTVKLWKLSQ---------------ETPLQDLEGHLARVSRVAFHP---SGKFLGTASFDSTWRLWDLETKSELLLQE 300 (459)
T ss_pred cCCceeeeccCC---------------CcchhhhhcchhhheeeeecC---CCceeeecccccchhhcccccchhhHhhc
Confidence 99999999985 357888999999999999999 99999999999999999999998877777
Q ss_pred cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEec
Q 000654 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1371)
Q Consensus 175 ~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g 254 (1371)
+|.+ .+++++| .+||.++++|+.|..-+|||++ ++..+..+.|
T Consensus 301 GHs~-~v~~iaf---~~DGSL~~tGGlD~~~RvWDlR---------------------------------tgr~im~L~g 343 (459)
T KOG0272|consen 301 GHSK-GVFSIAF---QPDGSLAATGGLDSLGRVWDLR---------------------------------TGRCIMFLAG 343 (459)
T ss_pred cccc-ccceeEe---cCCCceeeccCccchhheeecc---------------------------------cCcEEEEecc
Confidence 7665 4778887 7899999999999999999999 7888999999
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEE
Q 000654 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCR 331 (1371)
Q Consensus 255 H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~ 331 (1371)
|...|.+|+|+|+|-.|||||.|++++|||++..... .++.+|..-|+.++|. +.+|+|++.|++++
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l----------y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~k 413 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL----------YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVK 413 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeecccccc----------eecccccchhhheEecccCCeEEEEcccCccee
Confidence 9999999999999999999999999999999986552 4889999999999998 58999999999999
Q ss_pred EEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000654 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1371)
Q Consensus 332 VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwd 376 (1371)
||.. +..+++.+.+|.++ |-++++++|+.+++|++.|.++++|.
T Consensus 414 iWs~~~~~~~ksLaGHe~k-V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 414 IWSTRTWSPLKSLAGHEGK-VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eecCCCcccchhhcCCccc-eEEEEeccCCceEEEeccCceeeecc
Confidence 9999 88999999999995 99999999999999999999999995
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.2e-31 Score=275.36 Aligned_cols=281 Identities=18% Similarity=0.326 Sum_probs=246.0
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|.+.|.++.|+ +| .+++++++ ||.+.|||..+...++-++... .-|..++|+ |.| .++|++
T Consensus 54 H~~Ki~~~~ws--~D----sr~ivSaSqDGklIvWDs~TtnK~haipl~s-~WVMtCA~s-------PSg----~~VAcG 115 (343)
T KOG0286|consen 54 HLNKIYAMDWS--TD----SRRIVSASQDGKLIVWDSFTTNKVHAIPLPS-SWVMTCAYS-------PSG----NFVACG 115 (343)
T ss_pred cccceeeeEec--CC----cCeEEeeccCCeEEEEEcccccceeEEecCc-eeEEEEEEC-------CCC----CeEEec
Confidence 88999999999 98 78888877 8999999999888777777544 489999999 998 688888
Q ss_pred C-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEE
Q 000654 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1371)
Q Consensus 95 g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l 173 (1371)
| |+...||++.+....+ .....+.+.+|++.+.|+.|.+ |+ .|+|++.|.++.+||+++++.+..+
T Consensus 116 GLdN~Csiy~ls~~d~~g---------~~~v~r~l~gHtgylScC~f~d---D~-~ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEG---------NVRVSRELAGHTGYLSCCRFLD---DN-HILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CcCceeEEEecccccccc---------cceeeeeecCccceeEEEEEcC---CC-ceEecCCCceEEEEEcccceEEEEe
Confidence 8 9999999998643111 2355677899999999999986 54 5779999999999999999999999
Q ss_pred ecCCcceEEEEEeeccCC-CCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEE
Q 000654 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1371)
Q Consensus 174 ~~~~~~~v~s~~~~~~s~-d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1371)
.+|.+. +.++.+ +| +++.+++|+.|+..++||++ .+...+.|
T Consensus 183 ~GH~gD-V~slsl---~p~~~ntFvSg~cD~~aklWD~R---------------------------------~~~c~qtF 225 (343)
T KOG0286|consen 183 HGHTGD-VMSLSL---SPSDGNTFVSGGCDKSAKLWDVR---------------------------------SGQCVQTF 225 (343)
T ss_pred cCCccc-EEEEec---CCCCCCeEEecccccceeeeecc---------------------------------CcceeEee
Confidence 988764 567776 55 89999999999999999999 67889999
Q ss_pred ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecC---CccEEEEEEc--CCEEEEEeCC
Q 000654 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH---NARVWDCCLT--DSFIITAGED 327 (1371)
Q Consensus 253 ~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh---~~~I~~l~~s--~~~L~Sgs~D 327 (1371)
.||+..|.+|.|.|+|.-+++||+|++.|+||++..++ + ..+.| ...|++++|+ +++|+.|..|
T Consensus 226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-----~------a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-----L------AVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred cccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-----E------eeeccCcccCCceeEEEcccccEEEeeecC
Confidence 99999999999999999999999999999999999766 2 33334 3478999998 8999999999
Q ss_pred CeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000654 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1371)
Q Consensus 328 g~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwd 376 (1371)
.++.|||. .++.+..+.+|.++ |.++..+|||.-|+||+.|.++|||.
T Consensus 295 ~~c~vWDtlk~e~vg~L~GHeNR-vScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 295 FTCNVWDTLKGERVGVLAGHENR-VSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEeeccccceEEEeeccCCe-eEEEEECCCCcEEEecchhHheeecC
Confidence 99999999 99999999999995 99999999999999999999999994
No 15
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.4e-28 Score=274.52 Aligned_cols=535 Identities=15% Similarity=0.180 Sum_probs=367.6
Q ss_pred EEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCC--------cEEE
Q 000654 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN--------SIRV 161 (1371)
Q Consensus 90 ~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg--------~I~v 161 (1371)
-++.+--.-+.+++.+.. ..+..-+|++.|.|++.+| +.-.+++|-.-+ .+++
T Consensus 78 E~vyfvA~V~Vl~n~ee~----------------~Qr~y~GH~ddikc~~vHP---dri~vatGQ~ag~~g~~~~phvri 138 (626)
T KOG2106|consen 78 ELVYFVAAVGVLYNWEER----------------SQRHYLGHNDDIKCMAVHP---DRIRVATGQGAGTSGRPLQPHVRI 138 (626)
T ss_pred cEEEEeccEEEEEeehhh----------------hcccccCCCCceEEEeecC---CceeeccCcccccCCCcCCCeeee
Confidence 344444566777777542 2234569999999999999 877788765544 5999
Q ss_pred EECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEE--eCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee
Q 000654 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG--TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1371)
Q Consensus 162 Wd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasg--s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1371)
||..+-..+..+..-++ -+.+++|... ..|.++..- +.+..+.|||+.
T Consensus 139 Wdsv~L~TL~V~g~f~~-GV~~vaFsk~-~~G~~l~~vD~s~~h~lSVWdWq---------------------------- 188 (626)
T KOG2106|consen 139 WDSVTLSTLHVIGFFDR-GVTCVAFSKI-NGGSLLCAVDDSNPHMLSVWDWQ---------------------------- 188 (626)
T ss_pred cccccceeeeeeccccc-cceeeeeccc-CCCceEEEecCCCccccchhhch----------------------------
Confidence 99877776666553332 2445555433 345555553 455678899988
Q ss_pred cccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecC-CccEEEEEEc-
Q 000654 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVWDCCLT- 317 (1371)
Q Consensus 240 ~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh-~~~I~~l~~s- 317 (1371)
.+......+.-...|....|+|...-|+.....+.+.+|+.+.+.. .+..+ .+.++ ...|.|++|.
T Consensus 189 -----k~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l-----~k~~~--~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 189 -----KKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL-----VKRQG--IFEKREKKFVLCVTFLE 256 (626)
T ss_pred -----hhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce-----EEEee--ccccccceEEEEEEEcC
Confidence 3333444455567889999999766555555567999999988765 33333 33333 3679999998
Q ss_pred CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccC
Q 000654 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG 396 (1371)
Q Consensus 318 ~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~ 396 (1371)
+..++||..+|.|.||+. ..+..+....|.+ +|.+++...+|.+| +|+.|..|..||-.-+.++.
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~g-gv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~------------ 322 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTNRISKQVHAHDG-GVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRE------------ 322 (626)
T ss_pred CCCEEeecCCceEEEEeCCCceEEeEeeecCC-ceEEEEEecCccEe-ecCccceEEecccccccccc------------
Confidence 578999999999999999 4455556668988 79999999998755 59999999999942111111
Q ss_pred CccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCC
Q 000654 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476 (1371)
Q Consensus 397 ~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~ 476 (1371)
+..|+ ..++|+.++-...+ +++++....++.-.+.+. +..+.+++ ..+.+.++..
T Consensus 323 ------~elPe----------~~G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~----f~~~v~gh-~delwgla~h--- 377 (626)
T KOG2106|consen 323 ------TELPE----------QFGPIRTVAEGKGD-ILVGTTRNFILQGTLENG----FTLTVQGH-GDELWGLATH--- 377 (626)
T ss_pred ------ccCch----------hcCCeeEEecCCCc-EEEeeccceEEEeeecCC----ceEEEEec-ccceeeEEcC---
Confidence 11222 33567777655444 889998888887665433 34556666 4577777664
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCC
Q 000654 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPF 556 (1371)
Q Consensus 477 ~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~ 556 (1371)
+..+.+++.+.|+.+++|+ ..+.. ...... .+.. ...|.|.| .++.|...|...+.|.+...
T Consensus 378 -----ps~~q~~T~gqdk~v~lW~--~~k~~----wt~~~~--d~~~----~~~fhpsg-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 378 -----PSKNQLLTCGQDKHVRLWN--DHKLE----WTKIIE--DPAE----CADFHPSG-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred -----CChhheeeccCcceEEEcc--CCcee----EEEEec--Ccee----EeeccCcc-eEEEeeccceEEEEecccce
Confidence 4468899999999999999 22211 111111 1111 24677888 99999999999999987531
Q ss_pred CccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccccccccccC
Q 000654 557 SSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHG 636 (1371)
Q Consensus 557 ~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg 636 (1371)
+..... . ..+++++.|+|+|.+||+|+.|+.|+||.++.+.. ...+ ...+||
T Consensus 440 --------------lv~~~~-d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~------~y~r------~~k~~g 491 (626)
T KOG2106|consen 440 --------------LVTIHT-D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR------KYSR------VGKCSG 491 (626)
T ss_pred --------------eEEEEe-c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc------EEEE------eeeecC
Confidence 222211 2 67899999999999999999999999999987521 1111 122667
Q ss_pred CcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEecCCcceeeeeccccceeeeeEeEEcCCCccCcccceEEEeecCccE
Q 000654 637 ISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDF 716 (1371)
Q Consensus 637 ~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~l~v~Gf~s~~f 716 (1371)
..||.+.|+ +|+.+|.+.+.|..|.+|. .++.+ +...++.++ |. ...+.+||.
T Consensus 492 -s~ithLDwS---~Ds~~~~~~S~d~eiLyW~--~~~~~-~~ts~kDvk---------W~-------t~~c~lGF~---- 544 (626)
T KOG2106|consen 492 -SPITHLDWS---SDSQFLVSNSGDYEILYWK--PSECK-QITSVKDVK---------WA-------TYTCTLGFE---- 544 (626)
T ss_pred -ceeEEeeec---CCCceEEeccCceEEEEEc--cccCc-ccceeccee---------ee-------eeEEEEEEE----
Confidence 899999999 7789999999999999993 33221 111121111 21 112333431
Q ss_pred EEEeCccceEEEEeeccCcccccccccCCCCCCceEEEEEeccEEEEEEeeeccCcCCccccccccCCCccceeEeEeec
Q 000654 717 IIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVS 796 (1371)
Q Consensus 717 vvWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~fa~~k~~~i~i~~~~~~~~~~~~~~~~l~~~~HgreI~sv~~s~ 796 (1371)
...+.|+..|++++.+.
T Consensus 545 ---------------------------------------------------------------v~g~s~~t~i~a~~rs~ 561 (626)
T KOG2106|consen 545 ---------------------------------------------------------------VFGGSDGTDINAVARSH 561 (626)
T ss_pred ---------------------------------------------------------------EecccCCchHHHhhhhh
Confidence 01147889999998875
Q ss_pred ccccccccccccCCCCCeEEEEccCCCeEEEEEecCCCCcccceeccccccCccceeeeeeecccccccccccCCCcccc
Q 000654 797 ENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEIN 876 (1371)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~iaTGseD~tIrl~~~~~~~~~~~~~~~l~~H~~gsav~~i~~~~~~~~~~~~~~~~~d~~~ 876 (1371)
. .+++|+|.+.|+|+|++|+-... -..+..+.+|. +.|+.++|.++
T Consensus 562 ~---------------~~~lA~gdd~g~v~lf~yPc~s~-rA~~he~~ghs--~~vt~V~Fl~~---------------- 607 (626)
T KOG2106|consen 562 C---------------EKLLASGDDFGKVHLFSYPCSSP-RAPSHEYGGHS--SHVTNVAFLCK---------------- 607 (626)
T ss_pred h---------------hhhhhccccCceEEEEccccCCC-cccceeecccc--ceeEEEEEeeC----------------
Confidence 4 67999999999999999986443 45677899999 99999999755
Q ss_pred ccccccccCCCCEEEEEecccceEEEEEE
Q 000654 877 RQNGVAEDKENPFLLISVGAKRVLTSWLL 905 (1371)
Q Consensus 877 ~d~~~~~~~~~~~ll~S~g~d~~i~vW~~ 905 (1371)
+.. +++.|.|..|+.|++
T Consensus 608 ----------d~~-li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 608 ----------DSH-LISTGKDTSIMQWRL 625 (626)
T ss_pred ----------Cce-EEecCCCceEEEEEe
Confidence 344 445559999999986
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=2.9e-30 Score=265.64 Aligned_cols=280 Identities=21% Similarity=0.327 Sum_probs=237.0
Q ss_pred CCCccEEEEeCCCCcc-------cCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCe--EEEEEEeecCccEEEE
Q 000654 1 MGKKDLSEWRLDVGQY-------LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT--LIRPFQVFHGIRLHGI 71 (1371)
Q Consensus 1 s~D~tV~iWdl~~~~h-------~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~--~l~~~~~~~~~~I~~i 71 (1371)
|.|.|||+|...+|.+ .+.|.++.+. |+ +++||++....||+||+.++. ++.++.+|.. .|..+
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiT--pd----k~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-NVtaV 89 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDSQVNRLEIT--PD----KKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-NVTAV 89 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCccceeeEEEc--CC----cchhhhccCCeeEEEEccCCCCCceeEEeccCC-ceEEE
Confidence 5799999999999982 4568999999 99 899999999999999999875 5888888766 69999
Q ss_pred EeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEE
Q 000654 72 SCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1371)
Q Consensus 72 ~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~L 150 (1371)
.|. -|| +.+.+++ ||+++|||++... .. ..-.|..+|+++..+| +...|
T Consensus 90 gF~-------~dg----rWMyTgseDgt~kIWdlR~~~---------------~q-R~~~~~spVn~vvlhp---nQteL 139 (311)
T KOG0315|consen 90 GFQ-------CDG----RWMYTGSEDGTVKIWDLRSLS---------------CQ-RNYQHNSPVNTVVLHP---NQTEL 139 (311)
T ss_pred EEe-------ecC----eEEEecCCCceEEEEeccCcc---------------cc-hhccCCCCcceEEecC---CcceE
Confidence 999 888 5666665 8999999998632 22 2235779999999999 88899
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCC
Q 000654 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1371)
Q Consensus 151 atgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~ 230 (1371)
++|..+|.|++||+.+..+...+-......+.++.+ .+||.+|+++...|..++|++-.+...
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v---~~dgsml~a~nnkG~cyvW~l~~~~~~-------------- 202 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV---MPDGSMLAAANNKGNCYVWRLLNHQTA-------------- 202 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCCcceeeEEE---cCCCcEEEEecCCccEEEEEccCCCcc--------------
Confidence 999999999999999887776666555566777777 789999999999999999999742211
Q ss_pred CCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCcc
Q 000654 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1371)
Q Consensus 231 ~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~ 310 (1371)
....++..+..|++.|..+.+|||+++||++|.|.+++||+..+.-. .+ ..+.+|..+
T Consensus 203 -------------s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k-----le----~~l~gh~rW 260 (311)
T KOG0315|consen 203 -------------SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK-----LE----LVLTGHQRW 260 (311)
T ss_pred -------------ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee-----eE----EEeecCCce
Confidence 14567888999999999999999999999999999999999988611 12 488999999
Q ss_pred EEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEc
Q 000654 311 VWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD 357 (1371)
Q Consensus 311 I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~s 357 (1371)
+|+++|+ +.||+||+.|+++++|++ .++.+....+|.. +..|++..
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~ln 309 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK-AAVCVALN 309 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc-ccEEEEee
Confidence 9999998 699999999999999999 8999999999988 56676653
No 17
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.3e-29 Score=282.18 Aligned_cols=460 Identities=15% Similarity=0.213 Sum_probs=319.4
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
+...|-+|.|+ |. .+.++++- +|.|.|||.++-.++..+.+.+- +|.+..|- +.-+ .+++.+
T Consensus 12 rSdRVKsVd~H--Pt----ePw~la~LynG~V~IWnyetqtmVksfeV~~~-PvRa~kfi-------aRkn---Wiv~Gs 74 (794)
T KOG0276|consen 12 RSDRVKSVDFH--PT----EPWILAALYNGDVQIWNYETQTMVKSFEVSEV-PVRAAKFI-------ARKN---WIVTGS 74 (794)
T ss_pred cCCceeeeecC--CC----CceEEEeeecCeeEEEecccceeeeeeeeccc-chhhheee-------eccc---eEEEec
Confidence 56789999999 98 78888876 89999999999999999998665 89988887 4331 444444
Q ss_pred CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE-EEEE
Q 000654 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEV 173 (1371)
Q Consensus 95 gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~-~~~l 173 (1371)
.|..|+||+..+ ++.+..+..|.+.|++++.+| ...++.|++.|-+|++||.+.+-. ...+
T Consensus 75 DD~~IrVfnynt---------------~ekV~~FeAH~DyIR~iavHP---t~P~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 75 DDMQIRVFNYNT---------------GEKVKTFEAHSDYIRSIAVHP---TLPYVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred CCceEEEEeccc---------------ceeeEEeeccccceeeeeecC---CCCeEEecCCccEEEEeeccCceeeeeEE
Confidence 589999999987 677889999999999999999 999999999999999999987644 4555
Q ss_pred ecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe
Q 000654 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1371)
Q Consensus 174 ~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1371)
.+|. ..+..++| ...|.+.+|+++-|++|+||.+. ...+..++.
T Consensus 137 eGH~-HyVMqv~f--nPkD~ntFaS~sLDrTVKVWslg---------------------------------s~~~nfTl~ 180 (794)
T KOG0276|consen 137 EGHE-HYVMQVAF--NPKDPNTFASASLDRTVKVWSLG---------------------------------SPHPNFTLE 180 (794)
T ss_pred cCcc-eEEEEEEe--cCCCccceeeeeccccEEEEEcC---------------------------------CCCCceeee
Confidence 5554 34566666 34567899999999999999998 566778899
Q ss_pred cccCCEEEEEEcC--CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEEEEEeCCCe
Q 000654 254 GHEGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCT 329 (1371)
Q Consensus 254 gH~~~I~~v~~sp--dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~ 329 (1371)
||+..|++|.|-+ |..+|+||++|.+|+|||..+..+ ++ ++.||...|..+.|+| ..++||++||+
T Consensus 181 gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C-----V~-----TLeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 181 GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC-----VQ-----TLEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH-----HH-----HhhcccccceEEEecCCCcEEEEecCCcc
Confidence 9999999999987 457999999999999999999877 44 8999999999999996 78999999999
Q ss_pred EEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC-CCCcccccCCCccccccCCccEEEeeecC
Q 000654 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (1371)
Q Consensus 330 I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~-~~~~~~l~~~~~~~~~~~~~~i~s~~~~~ 407 (1371)
+|||+. +-++..++..... .||+++-.+.++.++.|.+.|.|.+ .+. ....-+.. ....+-+....+++......
T Consensus 251 vriWhs~Ty~lE~tLn~gle-RvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd-~~gKIiwa~~~ei~~~~~ks 327 (794)
T KOG0276|consen 251 VRIWNSKTYKLEKTLNYGLE-RVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMD-SNGKIIWAVHSEIQAVNLKS 327 (794)
T ss_pred EEEecCcceehhhhhhcCCc-eEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeec-CCccEEEEcCceeeeeecee
Confidence 999998 6677777776666 4999999998888888877776654 442 11111111 00011111122222221110
Q ss_pred Ccc------------ceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCC
Q 000654 408 FSE------------QIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN 475 (1371)
Q Consensus 408 ~~~------------~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~ 475 (1371)
... .+..+....-+...++.+|+|++++.+++|.-..+.. ..|+.-.-+. +.++.+.
T Consensus 328 ~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTa-----la~RnK~fG~------~~eFvw~ 396 (794)
T KOG0276|consen 328 VGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTA-----LALRNKAFGS------GLEFVWA 396 (794)
T ss_pred ccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEe-----eehhhccccc------ceeEEEc
Confidence 000 0011111122345678899999999999997654432 2232222222 2333332
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCC
Q 000654 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1371)
Q Consensus 476 ~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~ 555 (1371)
.+.+..++-.+++.|+++ .+.+....+ ... . .+..--|..|+..-.++.++++|-+..
T Consensus 397 ------~dsne~avRes~~~vki~--knfke~ksi------~~~--~------~~e~i~gg~Llg~~ss~~~~fydW~~~ 454 (794)
T KOG0276|consen 397 ------ADSNEFAVRESNGNVKIF--KNFKEHKSI------RPD--M------SAEGIFGGPLLGVRSSDFLCFYDWESG 454 (794)
T ss_pred ------CCCCeEEEEecCCceEEE--ecceecccc------ccc--c------ceeeecCCceEEEEeCCeEEEEEcccc
Confidence 445677888888999997 222211111 111 0 011122335555556677888887654
Q ss_pred CCccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCc
Q 000654 556 FSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1371)
Q Consensus 556 ~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~ 611 (1371)
. ++... .-..-.+.|+.+|.++++++.+. .+|+.++.
T Consensus 455 ~--------------lVrrI----~v~~k~v~w~d~g~lVai~~d~S-fyil~~n~ 491 (794)
T KOG0276|consen 455 E--------------LVRRI----EVTSKHVYWSDNGELVAIAGDDS-FYILKFNA 491 (794)
T ss_pred e--------------EEEEE----eeccceeEEecCCCEEEEEecCc-eeEEEecH
Confidence 2 22221 11234678889999999988875 56666554
No 18
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=1e-27 Score=267.73 Aligned_cols=505 Identities=15% Similarity=0.201 Sum_probs=352.8
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEeC---------CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcc
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGSG---------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~d---------g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~ 86 (1371)
|..+|-|++.+ || .-.+++|.. +.++|||..+-.-++.+..++. .|.+++|++. ..|
T Consensus 103 H~ddikc~~vH--Pd----ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~-GV~~vaFsk~-----~~G-- 168 (626)
T KOG2106|consen 103 HNDDIKCMAVH--PD----RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDR-GVTCVAFSKI-----NGG-- 168 (626)
T ss_pred CCCceEEEeec--CC----ceeeccCcccccCCCcCCCeeeecccccceeeeeeccccc-cceeeeeccc-----CCC--
Confidence 67789999999 98 556665552 4699999888777777776665 7999999943 344
Q ss_pred eeeEEEEEC---CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEE
Q 000654 87 VTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1371)
Q Consensus 87 ~~~~la~~g---d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd 163 (1371)
.++++-. +..+.|||...+ ..+...+..++.|..+.|+| .+..|......+.+.+|+
T Consensus 169 --~~l~~vD~s~~h~lSVWdWqk~---------------~~~~~vk~sne~v~~a~FHP---td~nliit~Gk~H~~Fw~ 228 (626)
T KOG2106|consen 169 --SLLCAVDDSNPHMLSVWDWQKK---------------AKLGPVKTSNEVVFLATFHP---TDPNLIITCGKGHLYFWT 228 (626)
T ss_pred --ceEEEecCCCccccchhhchhh---------------hccCcceeccceEEEEEecc---CCCcEEEEeCCceEEEEE
Confidence 3444433 467899999752 23334445668899999999 544444444578999999
Q ss_pred CCCCeEEEE---EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeec
Q 000654 164 ISNSSIILE---VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1371)
Q Consensus 164 ~~~~~~~~~---l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~ 240 (1371)
...+...++ ++.+++..+.++.| .+++ -+++|..+|.|.||+..
T Consensus 229 ~~~~~l~k~~~~fek~ekk~Vl~v~F---~eng-dviTgDS~G~i~Iw~~~----------------------------- 275 (626)
T KOG2106|consen 229 LRGGSLVKRQGIFEKREKKFVLCVTF---LENG-DVITGDSGGNILIWSKG----------------------------- 275 (626)
T ss_pred ccCCceEEEeeccccccceEEEEEEE---cCCC-CEEeecCCceEEEEeCC-----------------------------
Confidence 988866543 55677788889888 4444 58899999999999987
Q ss_pred ccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCE
Q 000654 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSF 320 (1371)
Q Consensus 241 ~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~ 320 (1371)
..+..+....|.+.|+++....+|.+|- |+.|+.|..|| ...+. .++ ..+....+.|..++-...-
T Consensus 276 ----~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k-----~r~---~elPe~~G~iRtv~e~~~d 341 (626)
T KOG2106|consen 276 ----TNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRK-----LRE---TELPEQFGPIRTVAEGKGD 341 (626)
T ss_pred ----CceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccc-----ccc---ccCchhcCCeeEEecCCCc
Confidence 3344444448999999999999987655 99999999999 32222 121 2445556677777766333
Q ss_pred EEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccE
Q 000654 321 IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1371)
Q Consensus 321 L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i 400 (1371)
|+.|.....|..=.+...--....+|.. ..|.++.+|+...++|++.|+.+++|+ +.+. .
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~-~~k~------------------~ 401 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN-DHKL------------------E 401 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc-CCce------------------e
Confidence 7777777777666665444555667877 699999999999999999999999999 3221 2
Q ss_pred EEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCC
Q 000654 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYP 480 (1371)
Q Consensus 401 ~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s 480 (1371)
|+..+ ..+..|+.|.|.|.+.+++..|..+.++ ..+..-..+.. ...++.++..
T Consensus 402 wt~~~-------------~d~~~~~~fhpsg~va~Gt~~G~w~V~d---~e~~~lv~~~~--d~~~ls~v~y-------- 455 (626)
T KOG2106|consen 402 WTKII-------------EDPAECADFHPSGVVAVGTATGRWFVLD---TETQDLVTIHT--DNEQLSVVRY-------- 455 (626)
T ss_pred EEEEe-------------cCceeEeeccCcceEEEeeccceEEEEe---cccceeEEEEe--cCCceEEEEE--------
Confidence 22221 2468899999999777777888766444 33322112222 2678888877
Q ss_pred CCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccc
Q 000654 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVC 560 (1371)
Q Consensus 481 ~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~ 560 (1371)
++++.++|+|+.|+.|+||.++.+....... . ...+ ...+.+.+++|++||.+-+.|-.|..|......+..+
T Consensus 456 sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~-----~-k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts 528 (626)
T KOG2106|consen 456 SPDGAFLAVGSHDNHIYIYRVSANGRKYSRV-----G-KCSG-SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS 528 (626)
T ss_pred cCCCCEEEEecCCCeEEEEEECCCCcEEEEe-----e-eecC-ceeEEeeecCCCceEEeccCceEEEEEccccCcccce
Confidence 5778999999999999999997654332110 1 1111 2234578999999999999999999994433222111
Q ss_pred cccCccceeeeeeee---ecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccccccccccCC
Q 000654 561 YESSKTNNVFLVAEF---SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGI 637 (1371)
Q Consensus 561 ~~~~~~~~l~l~~~~---~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~ 637 (1371)
.....-.+..+.-.| ...+...|..++-+.+.++||+|+..|+|.+|...-.+. + .|. .-.+.|+
T Consensus 529 ~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~---------r-A~~-he~~ghs- 596 (626)
T KOG2106|consen 529 VKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSP---------R-APS-HEYGGHS- 596 (626)
T ss_pred ecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCC---------c-ccc-eeecccc-
Confidence 111111111222222 246778889999999999999999999999998764210 1 111 1224677
Q ss_pred cCeEEEEEeecCCCceEEEEEcCCCcEEEEEE
Q 000654 638 STVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1371)
Q Consensus 638 ~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l 669 (1371)
..|++|+|+ .+..+|++++.|-.|..|++
T Consensus 597 ~~vt~V~Fl---~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 SHVTNVAFL---CKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceeEEEEEe---eCCceEEecCCCceEEEEEe
Confidence 789999999 44578999999999999986
No 19
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=9.7e-29 Score=283.84 Aligned_cols=525 Identities=13% Similarity=0.123 Sum_probs=342.3
Q ss_pred ccEEEEeCCCCc-------ccCcEEEEEEEecCCCCCCCCEEEEEe-C--CcEEEEECCCCeEEEEEEeecCccEEEEEe
Q 000654 4 KDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1371)
Q Consensus 4 ~tV~iWdl~~~~-------h~~~Vtavafs~~pd~~~~~~llaaG~-d--g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~ 73 (1371)
-+|.++|.+... +-.+++||||+ |+ |+|+++|. + +.++||+++.-..+++|..|+- .|.+++|
T Consensus 58 CvVVlfn~~~~tQ~hlvnssRk~~t~vAfS--~~----GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY-~vtcvaF 130 (1080)
T KOG1408|consen 58 CVVVLFNVDSCTQSHLVNSSRKPLTCVAFS--QN----GRYVATGECGRTPASKVWSLAFHGVVAEFVDHKY-NVTCVAF 130 (1080)
T ss_pred cEEEEEcccccchhheecccCcceeEEEEc--CC----CcEEEecccCCCccceeeeeccccchhhhhhccc-cceeeee
Confidence 367888888765 34689999999 98 99999998 3 8999999999888999998775 7999999
Q ss_pred eccccccCCCCcceeeEEEEEC---CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEE
Q 000654 74 NFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1371)
Q Consensus 74 s~~~~~~~pdg~~~~~~la~~g---d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~L 150 (1371)
+ |.+ .++++.| |=.|.+|+++... ...-..-...|..++|+. +|.|+
T Consensus 131 s-------p~~----kyvvSVGsQHDMIVnv~dWr~N~----------------~~asnkiss~Vsav~fsE---dgSYf 180 (1080)
T KOG1408|consen 131 S-------PGN----KYVVSVGSQHDMIVNVNDWRVNS----------------SGASNKISSVVSAVAFSE---DGSYF 180 (1080)
T ss_pred c-------CCC----cEEEeeccccceEEEhhhhhhcc----------------cccccccceeEEEEEEcc---CCcee
Confidence 9 887 4666555 5568888876422 000112346789999999 99999
Q ss_pred EEEECCCcEEEEECCCCeEE-------------EEEe--------cCCc---ceEEEEEe----ecc-------------
Q 000654 151 AIGCSDNSIRVWDISNSSII-------------LEVH--------SPER---CLLYSMKL----WGD------------- 189 (1371)
Q Consensus 151 atgs~Dg~I~vWd~~~~~~~-------------~~l~--------~~~~---~~v~s~~~----~~~------------- 189 (1371)
+|.+ ...|++|.++.++.. ..+. +..+ ...|++.- ..+
T Consensus 181 vT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcR 259 (1080)
T KOG1408|consen 181 VTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCR 259 (1080)
T ss_pred eeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhh
Confidence 9887 678999998765421 0010 1110 01122111 000
Q ss_pred -------CCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEE
Q 000654 190 -------NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI 262 (1371)
Q Consensus 190 -------s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v 262 (1371)
.....+++.|+.+|.|++|+..+-+......-+.+. ......+-.. .......-.+--...-++
T Consensus 260 TTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~hal-------g~d~a~~~q~--~~~~s~~~~a~fPD~IA~ 330 (1080)
T KOG1408|consen 260 TTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHAL-------GSDTANLSQP--EPKNSESSPAIFPDAIAC 330 (1080)
T ss_pred ccccceeeeecceEEEeeccceeeecCcchhhhcccccccccc-------ccchhhcccc--cccccccCcccCCceeEE
Confidence 114578999999999999998753332221100000 0000000000 000000001111233467
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-------------CCEEEEEeCCCe
Q 000654 263 EWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------------DSFIITAGEDCT 329 (1371)
Q Consensus 263 ~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-------------~~~L~Sgs~Dg~ 329 (1371)
.|.+...+|.....|.++++||+++... +... ..+.-|..-||++.-- +..++|++.|++
T Consensus 331 ~Fdet~~klscVYndhSlYvWDvrD~~k-----vgk~--~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~T 403 (1080)
T KOG1408|consen 331 QFDETTDKLSCVYNDHSLYVWDVRDVNK-----VGKC--SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGT 403 (1080)
T ss_pred EecCCCceEEEEEcCceEEEEecccccc-----ccce--eeeeeccceeeeeccccccccCcccccCCccceeEecCCCc
Confidence 8999999999999999999999998654 2211 2566788888887542 257999999999
Q ss_pred EEEEeCCC----cEEE----------EEe-----------------------eccCcCEEEEEEcCCCCEEEEEECCCcE
Q 000654 330 CRVWGSDG----KQLK----------MIK-----------------------EHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1371)
Q Consensus 330 I~VWd~~g----~~l~----------~l~-----------------------~h~~~~V~sl~~spdg~~L~Tgg~Dg~I 372 (1371)
||+|++.+ ...+ ... .....++.+++++|+|++|++|..-|++
T Consensus 404 IRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnl 483 (1080)
T KOG1408|consen 404 IRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNL 483 (1080)
T ss_pred EEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCce
Confidence 99999843 1110 000 0011269999999999999999999999
Q ss_pred EEEEcCC-CCcccccCCCccc---ccc------------CCcc-EEEeeecCCccceeeccCCCccEEEEEEecCC--cE
Q 000654 373 KVHQFQA-FLPGSLESHPEAK---EFN------------GRTE-IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TL 433 (1371)
Q Consensus 373 ~lwdl~~-~~~~~l~~~~~~~---~~~------------~~~~-i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~--~l 433 (1371)
++|++.. +..-..+.|...+ .++ ...+ +........-..++.+++|+..|+++.|...| ..
T Consensus 484 rVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 484 RVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred EEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceE
Confidence 9999954 3333444444321 000 0111 11111111223456678999999999999877 34
Q ss_pred EEEEcCCcEEEEEeec-CCCce-eEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCcccccee
Q 000654 434 YIATNHGYLYHTKLCD-MDSVN-WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLS 511 (1371)
Q Consensus 434 lv~t~~G~i~~~~l~~-~~~~~-w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~ 511 (1371)
+++.+..+...++... ...+. +..-.+......++.|++.+ ..++++++..|.+|+||++..++....
T Consensus 564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp--------~~k~v~t~cQDrnirif~i~sgKq~k~-- 633 (1080)
T KOG1408|consen 564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP--------TSKLVVTVCQDRNIRIFDIESGKQVKS-- 633 (1080)
T ss_pred EEeccCchhhheehhccccCceeccccccccccceEEEeeeCC--------CcceEEEEecccceEEEeccccceeee--
Confidence 4444444433333322 11111 11111112245677787744 358999999999999999998876543
Q ss_pred eeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecC
Q 000654 512 FTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE 591 (1371)
Q Consensus 512 ~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spd 591 (1371)
++.....++.++-+ ...|.|.||+++..|+++.++|+-.+ ++.+. ..+|...||.+-|++|
T Consensus 634 --FKgs~~~eG~lIKv--~lDPSgiY~atScsdktl~~~Df~sg--------------EcvA~-m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 634 --FKGSRDHEGDLIKV--ILDPSGIYLATSCSDKTLCFVDFVSG--------------ECVAQ-MTGHSEAVTGVKFLND 694 (1080)
T ss_pred --ecccccCCCceEEE--EECCCccEEEEeecCCceEEEEeccc--------------hhhhh-hcCcchheeeeeeccc
Confidence 33344555655543 45688999999999999999998765 34444 4589999999999999
Q ss_pred CCEEEEecCCCeEEEEEcCc
Q 000654 592 DEVLFCGDLRGNLVLFPLLR 611 (1371)
Q Consensus 592 g~lLatGs~dGtI~Iwd~~~ 611 (1371)
-+.|++.+.||.|+||.+..
T Consensus 695 CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhheeecCCceEEEEECch
Confidence 99999999999999999875
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-29 Score=263.41 Aligned_cols=296 Identities=17% Similarity=0.233 Sum_probs=230.6
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCC-----CeEEEEEecCCcceEEEEEeeccCCCCcEE
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-----SSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~-----~~~~~~l~~~~~~~v~s~~~~~~s~d~~~L 196 (1371)
+....++++|+++|..++..+ .+.+.|++++.|.++.+|++.. |..++.+.+|+ ..+..+.+ ++|+.+.
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~--~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs-H~v~dv~~---s~dg~~a 78 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKI--KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS-HFVSDVVL---SSDGNFA 78 (315)
T ss_pred heeeeeecCCCceEEEEEeec--CCCceEEEcccceEEEEEEeccCccccCceeeeeeccc-eEecceEE---ccCCceE
Confidence 456778999999999999988 2467899999999999999854 55677787754 34445555 7899999
Q ss_pred EEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC
Q 000654 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1371)
Q Consensus 197 asgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~ 276 (1371)
++++.|+.+++||+. +++..+.|.||...|.+++|++|.++++|||.
T Consensus 79 lS~swD~~lrlWDl~---------------------------------~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr 125 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLA---------------------------------TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR 125 (315)
T ss_pred EeccccceEEEEEec---------------------------------CCcEEEEEEecCCceEEEEecCCCceeecCCC
Confidence 999999999999999 66888899999999999999999999999999
Q ss_pred CCcEEEEEccCCcccCCCCceeeeceEee--cCCccEEEEEEcC----CEEEEEeCCCeEEEEeC-CCcEEEEEeeccCc
Q 000654 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLY--GHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR 349 (1371)
Q Consensus 277 Dg~VriWdl~~~~~~~~~~~~~~~~~~~~--gh~~~I~~l~~s~----~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~ 349 (1371)
|++|++|+...... .+.. +|..+|.|+.|+| .+|++++.|+++++||+ +-+....+.+|.+
T Consensus 126 DkTiklwnt~g~ck-----------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~- 193 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCK-----------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG- 193 (315)
T ss_pred cceeeeeeecccEE-----------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-
Confidence 99999999987543 1333 3478999999995 48999999999999999 5566677999999
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcC-CCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEe
Q 000654 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (1371)
Q Consensus 350 ~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~-~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs 428 (1371)
.++.++++|||..+++||.||.+.+||++ ++.+.++ ++...|++++|+
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-------------------------------~a~~~v~sl~fs 242 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-------------------------------EAFDIVNSLCFS 242 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-------------------------------cCCCeEeeEEec
Confidence 69999999999999999999999999994 2322221 244568888888
Q ss_pred cCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCcccc
Q 000654 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (1371)
Q Consensus 429 ~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~ 508 (1371)
|+...|+...... |+||++.++.+..
T Consensus 243 pnrywL~~at~~s------------------------------------------------------IkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 243 PNRYWLCAATATS------------------------------------------------------IKIWDLESKAVVE 268 (315)
T ss_pred CCceeEeeccCCc------------------------------------------------------eEEEeccchhhhh
Confidence 8755444332222 4555554444433
Q ss_pred ceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCC
Q 000654 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC 553 (1371)
Q Consensus 509 ~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~ 553 (1371)
...........+.....++.++++++|..|++|-.|+.|++|.+.
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 322222222223334445567899999999999999999999875
No 21
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=9.5e-31 Score=287.49 Aligned_cols=271 Identities=20% Similarity=0.313 Sum_probs=235.6
Q ss_pred CccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEee
Q 000654 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (1371)
Q Consensus 65 ~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~ 143 (1371)
..+|..+.|+ +|+ ..|++++ +|.++||+... ...+.++.||.+.|.++.|+|.
T Consensus 175 ~rPis~~~fS-------~ds----~~laT~swsG~~kvW~~~~---------------~~~~~~l~gH~~~v~~~~fhP~ 228 (459)
T KOG0272|consen 175 TRPISGCSFS-------RDS----KHLATGSWSGLVKVWSVPQ---------------CNLLQTLRGHTSRVGAAVFHPV 228 (459)
T ss_pred CCcceeeEee-------cCC----CeEEEeecCCceeEeecCC---------------cceeEEEeccccceeeEEEccC
Confidence 3489999999 887 6777777 99999999875 5678899999999999999992
Q ss_pred cCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCC
Q 000654 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1371)
Q Consensus 144 ~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~ 223 (1371)
+ ++..||||+.||++++|++.+...+..+.+|.. -+..++| .|+|.+|++++.|.+-++||+.
T Consensus 229 ~-~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~-RVs~Vaf---HPsG~~L~TasfD~tWRlWD~~------------ 291 (459)
T KOG0272|consen 229 D-SDLNLATASADGTVKLWKLSQETPLQDLEGHLA-RVSRVAF---HPSGKFLGTASFDSTWRLWDLE------------ 291 (459)
T ss_pred C-CccceeeeccCCceeeeccCCCcchhhhhcchh-hheeeee---cCCCceeeecccccchhhcccc------------
Confidence 1 356899999999999999999888988888764 3555666 7899999999999999999999
Q ss_pred CCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceE
Q 000654 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1371)
Q Consensus 224 ~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~ 303 (1371)
+...+....||...|++++|.|||.+++||+.|..-||||++++++ + ..
T Consensus 292 ---------------------tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~-----i-----m~ 340 (459)
T KOG0272|consen 292 ---------------------TKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC-----I-----MF 340 (459)
T ss_pred ---------------------cchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE-----E-----EE
Confidence 5666777789999999999999999999999999999999999987 3 48
Q ss_pred eecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcC-CCCEEEEEECCCcEEEEEcCC
Q 000654 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 304 ~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~sp-dg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
+.||..+|.+++|+ |-.||||+.|++++|||+ ..+++.++..|.. -|+.+.|+| .|.+|+|++.|++++||...+
T Consensus 341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCeEEEEcccCcceeeecCCC
Confidence 89999999999999 468999999999999999 5667899999999 599999998 678999999999999999843
Q ss_pred -CCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCC
Q 000654 380 -FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1371)
Q Consensus 380 -~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G 440 (1371)
.+++++ .+|.+.|-++.+++++.++++++..
T Consensus 420 ~~~~ksL------------------------------aGHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 420 WSPLKSL------------------------------AGHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred cccchhh------------------------------cCCccceEEEEeccCCceEEEeccC
Confidence 444444 4566779999999999988887543
No 22
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-27 Score=279.49 Aligned_cols=309 Identities=20% Similarity=0.318 Sum_probs=248.0
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g 95 (1371)
...|-.++|+ |. +++++++- .|.|++||..=+.++.+|..|++ +|.+|+|+ |.+ .+++++|
T Consensus 9 SsRvKglsFH--P~----rPwILtslHsG~IQlWDYRM~tli~rFdeHdG-pVRgv~FH-------~~q----plFVSGG 70 (1202)
T KOG0292|consen 9 SSRVKGLSFH--PK----RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG-PVRGVDFH-------PTQ----PLFVSGG 70 (1202)
T ss_pred cccccceecC--CC----CCEEEEeecCceeeeehhhhhhHHhhhhccCC-ccceeeec-------CCC----CeEEecC
Confidence 3568899999 98 89999988 79999999999999999999888 99999999 877 6777777
Q ss_pred -CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEe
Q 000654 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1371)
Q Consensus 96 -d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~ 174 (1371)
|..|+||+... -+++.+|.||-+.|+.+.|++ .-..|++++.|.+|+||+..+++++..+.
T Consensus 71 DDykIkVWnYk~---------------rrclftL~GHlDYVRt~~FHh---eyPWIlSASDDQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 71 DDYKIKVWNYKT---------------RRCLFTLLGHLDYVRTVFFHH---EYPWILSASDDQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred CccEEEEEeccc---------------ceehhhhccccceeEEeeccC---CCceEEEccCCCeEEEEeccCCceEEEEe
Confidence 68999999986 467889999999999999999 89999999999999999999999999998
Q ss_pred cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEec
Q 000654 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1371)
Q Consensus 175 ~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g 254 (1371)
+|.- .+.+..| .|...++++++-|.+|+|||+..-+......+.....+.+ ......++- +......+.+.|
T Consensus 133 GHnH-YVMcAqF---hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~---~~~~~dLfg-~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 133 GHNH-YVMCAQF---HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG---QQGNSDLFG-QTDAVVKHVLEG 204 (1202)
T ss_pred cCce-EEEeecc---CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc---cccchhhcC-CcCeeeeeeecc
Confidence 7754 4566666 5678899999999999999987422211111100000000 000011110 012234467889
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEEEEEeCCCeEEE
Q 000654 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRV 332 (1371)
Q Consensus 255 H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~I~V 332 (1371)
|...|+-++|+|.-..++||++|+.|++|.+...+. =++. +..||...|.++-|+| ++++|.|+|++|+|
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa------WEvD--tcrgH~nnVssvlfhp~q~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA------WEVD--TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV 276 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccccc------eeeh--hhhcccCCcceEEecCccceeEecCCCccEEE
Confidence 999999999999999999999999999999886543 1222 8899999999999996 89999999999999
Q ss_pred EeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 333 Wd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
||+ ..+.+++++....+ .|.++.+|..++++ +|.|+-+.+|.++.
T Consensus 277 wDm~kRt~v~tfrrendR-FW~laahP~lNLfA-AgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 277 WDMTKRTSVQTFRRENDR-FWILAAHPELNLFA-AGHDSGMIVFKLER 322 (1202)
T ss_pred EecccccceeeeeccCCe-EEEEEecCCcceee-eecCCceEEEEEcc
Confidence 999 66788899877774 99999999988766 55788888998853
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=8.5e-29 Score=254.92 Aligned_cols=282 Identities=19% Similarity=0.329 Sum_probs=230.2
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCC
Q 000654 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1371)
Q Consensus 36 ~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~ 114 (1371)
-+|++++ |.+||+|.+.+|.+.++++- .+..|..+.+. ||+ ..||+++...||+||++...
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh-~dsqVNrLeiT-------pdk----~~LAaa~~qhvRlyD~~S~n------ 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH-PDSQVNRLEIT-------PDK----KDLAAAGNQHVRLYDLNSNN------ 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec-CccceeeEEEc-------CCc----chhhhccCCeeEEEEccCCC------
Confidence 3555544 89999999999999999984 55589999999 997 79999999999999998754
Q ss_pred CCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCc
Q 000654 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL 194 (1371)
Q Consensus 115 ~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~ 194 (1371)
..++.++.+|+..|.++.|.. +|+.++||++||+++|||++...+.+.+... ..+.++.+ .|+..
T Consensus 73 -------p~Pv~t~e~h~kNVtaVgF~~---dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvl---hpnQt 137 (311)
T KOG0315|consen 73 -------PNPVATFEGHTKNVTAVGFQC---DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVL---HPNQT 137 (311)
T ss_pred -------CCceeEEeccCCceEEEEEee---cCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEe---cCCcc
Confidence 347889999999999999999 9999999999999999999986665555543 44556665 57788
Q ss_pred EEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEE-EecccCCEEEEEEcCCCCEEEE
Q 000654 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWSSCGSKLVS 273 (1371)
Q Consensus 195 ~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~-l~gH~~~I~~v~~spdg~~LaS 273 (1371)
-|++|..+|.|++||+.. ....+. +..-...|.++...|||.+|+.
T Consensus 138 eLis~dqsg~irvWDl~~---------------------------------~~c~~~liPe~~~~i~sl~v~~dgsml~a 184 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLGE---------------------------------NSCTHELIPEDDTSIQSLTVMPDGSMLAA 184 (311)
T ss_pred eEEeecCCCcEEEEEccC---------------------------------CccccccCCCCCcceeeEEEcCCCcEEEE
Confidence 899999999999999982 211111 2234468999999999999999
Q ss_pred EeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeCCC--cEEEEEeeccCc
Q 000654 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG--KQLKMIKEHIGR 349 (1371)
Q Consensus 274 ~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~g--~~l~~l~~h~~~ 349 (1371)
+...|...+|++..... ...++++ ..+..|.+.+..+.++ .++|++++.|.+++||+.++ +....+.+|..
T Consensus 185 ~nnkG~cyvW~l~~~~~--~s~l~P~--~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r- 259 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQT--ASELEPV--HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR- 259 (311)
T ss_pred ecCCccEEEEEccCCCc--cccceEh--hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc-
Confidence 99999999999987543 1123333 3788999999999999 48999999999999999954 44567888987
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcC-CCCcccccCC
Q 000654 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESH 388 (1371)
Q Consensus 350 ~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~-~~~~~~l~~~ 388 (1371)
.+|.++||.||.||+||+.|+.+++|++. ++.++...+|
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 79999999999999999999999999994 3434444433
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=8.1e-29 Score=275.33 Aligned_cols=316 Identities=16% Similarity=0.248 Sum_probs=255.3
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC--C--eEEEEE---------EeecCccEEEEEeeccccccC
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--G--TLIRPF---------QVFHGIRLHGISCNFINCTEG 81 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~s--g--~~l~~~---------~~~~~~~I~~i~~s~~~~~~~ 81 (1371)
|..+|++.+++ |- ...++++|+ +.+-++|++.. . .....+ ..+....|++++|+
T Consensus 177 ~~~~V~~~~Wn--P~---~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn------- 244 (524)
T KOG0273|consen 177 HESEVFICAWN--PL---RDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN------- 244 (524)
T ss_pred CCCceEEEecC--ch---hhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec-------
Confidence 78899999999 86 123788887 68999999864 1 111111 12233579999999
Q ss_pred CCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEE
Q 000654 82 SVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (1371)
Q Consensus 82 pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~ 160 (1371)
.+| .+||++. +|.++||+.. +.++.++..|.++|.++.|+. .|.+|++++.|+++.
T Consensus 245 ~~G----~~LatG~~~G~~riw~~~----------------G~l~~tl~~HkgPI~slKWnk---~G~yilS~~vD~tti 301 (524)
T KOG0273|consen 245 NDG----TLLATGSEDGEARIWNKD----------------GNLISTLGQHKGPIFSLKWNK---KGTYILSGGVDGTTI 301 (524)
T ss_pred CCC----CeEEEeecCcEEEEEecC----------------chhhhhhhccCCceEEEEEcC---CCCEEEeccCCccEE
Confidence 888 5777765 9999999986 466778889999999999998 999999999999999
Q ss_pred EEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeec
Q 000654 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1371)
Q Consensus 161 vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~ 240 (1371)
+||..++.....+.-++.. ...+.+ .+..-+++.+.|+.|+|+.+.
T Consensus 302 lwd~~~g~~~q~f~~~s~~-~lDVdW----~~~~~F~ts~td~~i~V~kv~----------------------------- 347 (524)
T KOG0273|consen 302 LWDAHTGTVKQQFEFHSAP-ALDVDW----QSNDEFATSSTDGCIHVCKVG----------------------------- 347 (524)
T ss_pred EEeccCceEEEeeeeccCC-ccceEE----ecCceEeecCCCceEEEEEec-----------------------------
Confidence 9999999888777655543 123333 235679999999999999998
Q ss_pred ccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--
Q 000654 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-- 318 (1371)
Q Consensus 241 ~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~-- 318 (1371)
...++.++.||.+.|.+|.|.|.+.+|+|+|+|++++||....... .. .+.+|...|+.+.|+|
T Consensus 348 ----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~-----~~-----~l~~Hskei~t~~wsp~g 413 (524)
T KOG0273|consen 348 ----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS-----VH-----DLQAHSKEIYTIKWSPTG 413 (524)
T ss_pred ----CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc-----hh-----hhhhhccceeeEeecCCC
Confidence 6678889999999999999999999999999999999999877655 22 7889999999999983
Q ss_pred ---------CEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC-CCCcccccC
Q 000654 319 ---------SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLES 387 (1371)
Q Consensus 319 ---------~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~-~~~~~~l~~ 387 (1371)
..+++++.|+++++||+ .|.++.+|..|.. +|.+++|+|+|++||+|+.||.|.+|+.+ ++..+++.
T Consensus 414 ~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~- 491 (524)
T KOG0273|consen 414 PVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ- 491 (524)
T ss_pred CccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-
Confidence 47999999999999999 9999999999998 89999999999999999999999999994 23322222
Q ss_pred CCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEE-EEEcCCcEEEEE
Q 000654 388 HPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYHTK 446 (1371)
Q Consensus 388 ~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~ll-v~t~~G~i~~~~ 446 (1371)
....|..++|+.+|..+ ++.++|.+..++
T Consensus 492 ------------------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 492 ------------------------------GTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred ------------------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 22458888999888654 445666655443
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.6e-28 Score=255.78 Aligned_cols=284 Identities=16% Similarity=0.220 Sum_probs=233.4
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECC-----CCeEEEEEEeecCccEEEEEeeccccccCCCCcceee
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE-----AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~-----sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~ 89 (1371)
|.+.|++++.. +. . ..+++.++ |..+.+|++. .|..++.+.+|+. .|..+..+ +||+ +
T Consensus 14 h~d~Vt~la~~--~~--~-~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH-~v~dv~~s-------~dg~---~ 77 (315)
T KOG0279|consen 14 HTDWVTALAIK--IK--N-SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH-FVSDVVLS-------SDGN---F 77 (315)
T ss_pred CCceEEEEEee--cC--C-CceEEEcccceEEEEEEeccCccccCceeeeeeccce-EecceEEc-------cCCc---e
Confidence 88999999998 65 2 34555555 8999999985 4677899999776 89999999 9995 5
Q ss_pred EEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE
Q 000654 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1371)
Q Consensus 90 ~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~ 169 (1371)
.|.++-|+++++||+.. .+..+.+.||...|.+++|+| |...|++|+.|++|++|+......
T Consensus 78 alS~swD~~lrlWDl~~---------------g~~t~~f~GH~~dVlsva~s~---dn~qivSGSrDkTiklwnt~g~ck 139 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLAT---------------GESTRRFVGHTKDVLSVAFST---DNRQIVSGSRDKTIKLWNTLGVCK 139 (315)
T ss_pred EEeccccceEEEEEecC---------------CcEEEEEEecCCceEEEEecC---CCceeecCCCcceeeeeeecccEE
Confidence 66666699999999986 456778889999999999999 999999999999999999866544
Q ss_pred EEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeE
Q 000654 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1371)
Q Consensus 170 ~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~ 249 (1371)
.......++..+.+++|.+. .+..+|++++.|++|++||++ ..+..
T Consensus 140 ~t~~~~~~~~WVscvrfsP~-~~~p~Ivs~s~DktvKvWnl~---------------------------------~~~l~ 185 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPN-ESNPIIVSASWDKTVKVWNLR---------------------------------NCQLR 185 (315)
T ss_pred EEEecCCCcCcEEEEEEcCC-CCCcEEEEccCCceEEEEccC---------------------------------Ccchh
Confidence 43333334888999999543 236799999999999999999 56677
Q ss_pred EEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC-CEEEEEeCCC
Q 000654 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDC 328 (1371)
Q Consensus 250 ~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~-~~L~Sgs~Dg 328 (1371)
..+.||++.++.+++||||.++++|+.||.+.+||++.++. ....+|...|.+++|+| .+.+.+..+.
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-----------lysl~a~~~v~sl~fspnrywL~~at~~ 254 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-----------LYSLEAFDIVNSLCFSPNRYWLCAATAT 254 (315)
T ss_pred hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-----------eEeccCCCeEeeEEecCCceeEeeccCC
Confidence 78899999999999999999999999999999999999876 26678899999999996 4555666677
Q ss_pred eEEEEeC-CCcEEEEEeecc--------CcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 329 TCRVWGS-DGKQLKMIKEHI--------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 329 ~I~VWd~-~g~~l~~l~~h~--------~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.|+|||+ ++.++..++... .....+++|++||..|..|-.|+.|++|.+.
T Consensus 255 sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 255 SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 7999999 666655543211 1125678899999999999999999999873
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.8e-27 Score=267.87 Aligned_cols=426 Identities=14% Similarity=0.222 Sum_probs=297.5
Q ss_pred ccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecC
Q 000654 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1371)
Q Consensus 66 ~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~ 145 (1371)
.+|.++.++ |.- +.+|++--.|.|.||+.++ ...+..+.-..-+|++..|.+
T Consensus 14 dRVKsVd~H-------Pte---Pw~la~LynG~V~IWnyet---------------qtmVksfeV~~~PvRa~kfia--- 65 (794)
T KOG0276|consen 14 DRVKSVDFH-------PTE---PWILAALYNGDVQIWNYET---------------QTMVKSFEVSEVPVRAAKFIA--- 65 (794)
T ss_pred CceeeeecC-------CCC---ceEEEeeecCeeEEEeccc---------------ceeeeeeeecccchhhheeee---
Confidence 489999999 543 2667777799999999987 345666666677999999998
Q ss_pred CCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCC
Q 000654 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1371)
Q Consensus 146 dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~ 225 (1371)
..+.+++|+.|..|++|+..+++.+..++.|.. .+.++.. .|...++++++.|-.|++||++
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-yIR~iav---HPt~P~vLtsSDDm~iKlW~we-------------- 127 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-YIRSIAV---HPTLPYVLTSSDDMTIKLWDWE-------------- 127 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeEEeecccc-ceeeeee---cCCCCeEEecCCccEEEEeecc--------------
Confidence 889999999999999999999999999987765 4566776 4556799999999999999998
Q ss_pred CCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEe
Q 000654 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1371)
Q Consensus 226 s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~sp-dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~ 304 (1371)
....+.+.+.||+..|++|+|+| |.+.+||+|-|++|++|.+...... .++
T Consensus 128 ------------------~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----------fTl 179 (794)
T KOG0276|consen 128 ------------------NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----------FTL 179 (794)
T ss_pred ------------------CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----------eee
Confidence 25677889999999999999999 6789999999999999999886552 489
Q ss_pred ecCCccEEEEEEc-C---CEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 305 YGHNARVWDCCLT-D---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 305 ~gh~~~I~~l~~s-~---~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
.||...|.++.|- + .+|+||+.|.+++|||+ +..+++++.+|.. .|..+.|+|.-.+++||+.||++|||....
T Consensus 180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 9999999999996 2 59999999999999999 8889999999999 699999999999999999999999998743
Q ss_pred C-CcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEE-cCCcEEEEEeecCCCceeEE
Q 000654 380 F-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKLCDMDSVNWNK 457 (1371)
Q Consensus 380 ~-~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t-~~G~i~~~~l~~~~~~~w~~ 457 (1371)
- ...++ +-.-+.+.|++-.+.+..++.+ ..|.+ .+++
T Consensus 259 y~lE~tL------------------------------n~gleRvW~I~~~k~~~~i~vG~Deg~i-~v~l---------- 297 (794)
T KOG0276|consen 259 YKLEKTL------------------------------NYGLERVWCIAAHKGDGKIAVGFDEGSV-TVKL---------- 297 (794)
T ss_pred eehhhhh------------------------------hcCCceEEEEeecCCCCeEEEeccCCcE-EEEc----------
Confidence 1 11111 1112456777766655555444 44443 2222
Q ss_pred eEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEE---------EEcCCccccceeeeeeeccCcccceeEEE
Q 000654 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV---------RVVGDVHTPQLSFTFTWSAGIERQLLGTY 528 (1371)
Q Consensus 458 i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iw---------di~~~~~~~~~~~~~~~~~~~~~~il~~~ 528 (1371)
..+.|..+|+.. ++++-. ..+.|.-- ++.+++.++.. ........+.-..
T Consensus 298 ----greeP~vsMd~~----------gKIiwa--~~~ei~~~~~ks~~~~~ev~DgErL~Ls-----vKeLgs~eiyPq~ 356 (794)
T KOG0276|consen 298 ----GREEPAVSMDSN----------GKIIWA--VHSEIQAVNLKSVGAQKEVTDGERLPLS-----VKELGSVEIYPQT 356 (794)
T ss_pred ----cCCCCceeecCC----------ccEEEE--cCceeeeeeceeccCcccccCCccccch-----hhhccccccchHH
Confidence 113333334321 112111 11222221 22222222210 0000001111112
Q ss_pred EeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEE
Q 000654 529 WCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFP 608 (1371)
Q Consensus 529 ~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd 608 (1371)
+..+|+|++++.+ .||...++..-. +...+-+.-..+.|++|.+..|+-..++.|++|.
T Consensus 357 L~hsPNGrfV~Vc-gdGEyiIyTala--------------------~RnK~fG~~~eFvw~~dsne~avRes~~~vki~k 415 (794)
T KOG0276|consen 357 LAHSPNGRFVVVC-GDGEYIIYTALA--------------------LRNKAFGSGLEFVWAADSNEFAVRESNGNVKIFK 415 (794)
T ss_pred hccCCCCcEEEEe-cCccEEEEEeee--------------------hhhcccccceeEEEcCCCCeEEEEecCCceEEEe
Confidence 4567999988876 467777774221 1111233445677889988899988899999992
Q ss_pred cCcccccccccccccccccccccccccCCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEecCCc
Q 000654 609 LLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRE 674 (1371)
Q Consensus 609 ~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~~~~ 674 (1371)
+. .....+.|-. . .-.+. +..|+....++.+++|+.+.+.+
T Consensus 416 --nf-------ke~ksi~~~~----------~-~e~i~-----gg~Llg~~ss~~~~fydW~~~~l 456 (794)
T KOG0276|consen 416 --NF-------KEHKSIRPDM----------S-AEGIF-----GGPLLGVRSSDFLCFYDWESGEL 456 (794)
T ss_pred --cc-------eecccccccc----------c-eeeec-----CCceEEEEeCCeEEEEEcccceE
Confidence 21 1111221111 0 11122 46677788889999999998764
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=265.53 Aligned_cols=279 Identities=23% Similarity=0.345 Sum_probs=248.4
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|..+|+.+-|+ |+ ..++++++ +.+|++||..+|++...+++|.+ .|..|.|+ ..| ..++++
T Consensus 107 ~r~~vt~v~~h--p~----~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~-sv~di~~~-------a~G----k~l~tc 168 (406)
T KOG0295|consen 107 HRSSVTRVIFH--PS----EALVVSASEDATIKVFDTETGELERSLRGHTD-SVFDISFD-------ASG----KYLATC 168 (406)
T ss_pred cccceeeeeec--cC----ceEEEEecCCceEEEEEccchhhhhhhhcccc-ceeEEEEe-------cCc----cEEEec
Confidence 67789999999 98 66777775 79999999999999999999887 69999999 777 677777
Q ss_pred C-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEE
Q 000654 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1371)
Q Consensus 95 g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l 173 (1371)
+ |=++++||.+. .+++++.+.+|...|.+++|.| .|.+|++++.|++|+.|++.++.++.++
T Consensus 169 SsDl~~~LWd~~~--------------~~~c~ks~~gh~h~vS~V~f~P---~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 169 SSDLSAKLWDFDT--------------FFRCIKSLIGHEHGVSSVFFLP---LGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred CCccchhheeHHH--------------HHHHHHHhcCcccceeeEEEEe---cCCeeeecccccceeEEecccceeEEec
Confidence 6 66699999975 2567788889999999999999 8999999999999999999999999999
Q ss_pred ecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe
Q 000654 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1371)
Q Consensus 174 ~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1371)
.+|.. .+..++. ..||.++++++.|..|++|-.. +......+.
T Consensus 232 ~~h~e-wvr~v~v---~~DGti~As~s~dqtl~vW~~~---------------------------------t~~~k~~lR 274 (406)
T KOG0295|consen 232 PGHSE-WVRMVRV---NQDGTIIASCSNDQTLRVWVVA---------------------------------TKQCKAELR 274 (406)
T ss_pred cCchH-hEEEEEe---cCCeeEEEecCCCceEEEEEec---------------------------------cchhhhhhh
Confidence 88766 6666665 7899999999999999999988 555667788
Q ss_pred cccCCEEEEEEcCC---------------CCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-
Q 000654 254 GHEGSIFRIEWSSC---------------GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (1371)
Q Consensus 254 gH~~~I~~v~~spd---------------g~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s- 317 (1371)
+|+-+|.+++|.|. ++++.++|.|++|++||+.++.+. .++.||..+|..++|+
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL----------~tL~ghdnwVr~~af~p 344 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL----------FTLVGHDNWVRGVAFSP 344 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE----------EEEecccceeeeeEEcC
Confidence 99999999999652 258999999999999999998772 4899999999999999
Q ss_pred -CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 318 -DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 318 -~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
|+||+++.+|++++|||+ ++++++++..|.. -|++++|+.+..+++||+-|.++++|.-
T Consensus 345 ~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h-fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 345 GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCeEEEEEecCCcEEEEEeccceeeeccCCCcc-eeEEEecCCCCceEEeccccceeeeeec
Confidence 799999999999999999 8999999999998 4999999999999999999999999963
No 28
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=2.4e-26 Score=265.91 Aligned_cols=574 Identities=16% Similarity=0.215 Sum_probs=362.6
Q ss_pred CCccEEEEeCCCCc-------ccCcEEEEEEEecCCCCCCCCEEEE-EeCCcEEEEECCCCe--EEEEEEeecCccEEEE
Q 000654 2 GKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLA-GSGSQVLLYDLEAGT--LIRPFQVFHGIRLHGI 71 (1371)
Q Consensus 2 ~D~tV~iWdl~~~~-------h~~~Vtavafs~~pd~~~~~~llaa-G~dg~I~Iwd~~sg~--~l~~~~~~~~~~I~~i 71 (1371)
.|+.|++|.++..+ ....+.+++++ .. .....+ +.++++.+||.+..+ +++.++...+ .+..+
T Consensus 77 sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~--a~----~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k-~~ipL 149 (764)
T KOG1063|consen 77 SDGRVILWKLRDEYLIKIYTIQGHCKECVCVV--AR----SSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIK-EAIPL 149 (764)
T ss_pred CCCcEEEEEEeehheEEEEeecCcceeEEEEE--ee----eeEEEeeccCceEEEeecCCCceeeehheehhhh-hHhhH
Confidence 58999999999433 11356777777 32 123333 468999999996555 3333432222 33333
Q ss_pred EeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEE
Q 000654 72 SCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1371)
Q Consensus 72 ~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~L 150 (1371)
+++. .|+.+ ..+++.++ +..|.++.-..+ +++.+..+.||.+||.+++|.....+.-+|
T Consensus 150 cL~~-----~~~~~--~~lla~Ggs~~~v~~~s~~~d-------------~f~~v~el~GH~DWIrsl~f~~~~~~~~~l 209 (764)
T KOG1063|consen 150 CLAA-----LKNNK--TFLLACGGSKFVVDLYSSSAD-------------SFARVAELEGHTDWIRSLAFARLGGDDLLL 209 (764)
T ss_pred HHhh-----hccCC--cEEEEecCcceEEEEeccCCc-------------ceeEEEEeeccchhhhhhhhhccCCCcEEE
Confidence 3331 14221 13444444 456666665432 278899999999999999998733334588
Q ss_pred EEEECCCcEEEEECCCCe---------------------EEEEE---------ecCCcceEEEEEeeccCCCCcEEEEEe
Q 000654 151 AIGCSDNSIRVWDISNSS---------------------IILEV---------HSPERCLLYSMKLWGDNLEALRIASGT 200 (1371)
Q Consensus 151 atgs~Dg~I~vWd~~~~~---------------------~~~~l---------~~~~~~~v~s~~~~~~s~d~~~Lasgs 200 (1371)
|+++.|..||||.+.-+. ...++ ...+...++++.+ .|.+..|++++
T Consensus 210 aS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W---~p~~~~LLSAS 286 (764)
T KOG1063|consen 210 ASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWW---HPEGLDLLSAS 286 (764)
T ss_pred EecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEE---ccchhhheecc
Confidence 999999999999874322 11111 1245667888877 67788999999
Q ss_pred CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcE
Q 000654 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1371)
Q Consensus 201 ~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~V 280 (1371)
.|.++.+|.... +-.+|.. ...+....|..+.-++..|+|++..+++-+..|..
T Consensus 287 aDksmiiW~pd~-----------------------~tGiWv~---~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 287 ADKSMIIWKPDE-----------------------NTGIWVD---VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred cCcceEEEecCC-----------------------ccceEEE---EEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 999999999871 1112221 11223333445567889999999999999999999
Q ss_pred EEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeCCCcE-----EEEEeeccCcCEEE
Q 000654 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQ-----LKMIKEHIGRGIWR 353 (1371)
Q Consensus 281 riWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~g~~-----l~~l~~h~~~~V~s 353 (1371)
++|...+... -... ....||...|.+++|+ +.+|+|+|.|.+-|+|-.-|+. +..-+-|.. .++|
T Consensus 341 hlWkt~d~~~-----w~~~--~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy-Dl~c 412 (764)
T KOG1063|consen 341 HLWKTKDKTF-----WTQE--PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY-DLTC 412 (764)
T ss_pred EEEeccCccc-----eeec--cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc-ccee
Confidence 9999333211 1111 2678999999999998 7999999999999999874332 233344666 4999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCCcccc---cC-----CCc--------cc------ccc----CCcc--------
Q 000654 354 CLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSL---ES-----HPE--------AK------EFN----GRTE-------- 399 (1371)
Q Consensus 354 l~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l---~~-----~~~--------~~------~~~----~~~~-------- 399 (1371)
++|-+....+++|.+...+|+|+.....++.+ .+ ... .. .+. ...+
T Consensus 413 ~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~ 492 (764)
T KOG1063|consen 413 LSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP 492 (764)
T ss_pred eehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence 99988667889999999999999743211111 01 000 00 000 0000
Q ss_pred ----EEEeeecCCc---------cceeeccCCCccEEEEEEecCCcEEEEEcCCc---EEEEEeecCCCceeEEeEee-c
Q 000654 400 ----IFSIKIPNFS---------EQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY---LYHTKLCDMDSVNWNKILQV-S 462 (1371)
Q Consensus 400 ----i~s~~~~~~~---------~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~---i~~~~l~~~~~~~w~~i~~~-~ 462 (1371)
...+..|... ..+.-+-+|...|.+++.+|++++++++.... --.+.+|+..+ |.++... .
T Consensus 493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~--W~~~~~L~~ 570 (764)
T KOG1063|consen 493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN--WLQVQELEG 570 (764)
T ss_pred cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--hhhhheecc
Confidence 0000011111 12222347889999999999999998864322 22344666544 6554322 2
Q ss_pred CCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEc
Q 000654 463 EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD 542 (1371)
Q Consensus 463 ~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s 542 (1371)
+.-.|.-+.+ ++++++|++.+.|.++.+|......... ..+.. ...+.+|+= -+.++|++.+++|++
T Consensus 571 HsLTVT~l~F--------Spdg~~LLsvsRDRt~sl~~~~~~~~~e---~~fa~-~k~HtRIIW-dcsW~pde~~FaTaS 637 (764)
T KOG1063|consen 571 HSLTVTRLAF--------SPDGRYLLSVSRDRTVSLYEVQEDIKDE---FRFAC-LKAHTRIIW-DCSWSPDEKYFATAS 637 (764)
T ss_pred cceEEEEEEE--------CCCCcEEEEeecCceEEeeeeecccchh---hhhcc-ccccceEEE-EcccCcccceeEEec
Confidence 3455666655 5789999999999999999986543221 11211 233444432 235789999999999
Q ss_pred CCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeec-----CCCEEEEecCCCeEEEEEcCccccccc
Q 000654 543 PKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF-----EDEVLFCGDLRGNLVLFPLLRDLLNDK 617 (1371)
Q Consensus 543 ~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~sp-----dg~lLatGs~dGtI~Iwd~~~~~~~~~ 617 (1371)
.|+.+++|..+......- ..+ + ...++.+||++++.| .+.++++|-+.|.|++|.........+
T Consensus 638 RDK~VkVW~~~~~~d~~i------~~~---a--~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~ 706 (764)
T KOG1063|consen 638 RDKKVKVWEEPDLRDKYI------SRF---A--CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVT 706 (764)
T ss_pred CCceEEEEeccCchhhhh------hhh---c--hhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccccc
Confidence 999999999886531000 011 1 235788999999886 345899999999999999773211000
Q ss_pred cc--ccccccccccccccccCCcCeEEEEEeecC-------CCceEEEEEcCCCcEEEEEEe
Q 000654 618 SV--ALHVEVSPLNYFKGAHGISTVSTLSVAKLR-------SNQTEIRSTGGDGCICYLEYD 670 (1371)
Q Consensus 618 ~~--~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~-------~~~~~L~T~g~DG~v~iw~l~ 670 (1371)
.. ....++.+. ..|. +.|+.+.|.+.. .....|++++.|-++|+++++
T Consensus 707 ~~~~~~~~~l~~~----~~~~-~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 707 VGTFNLDTRLCAT----IGPD-SAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ceeeeeccccccc----cChH-HhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 00 011111111 1233 679999998642 223568999999999999864
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.6e-27 Score=243.83 Aligned_cols=295 Identities=19% Similarity=0.323 Sum_probs=234.0
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCC-CcEEEEEECCCcEEEEECCCC---eEEEEEecCCcceEEEEEeeccCCCCcEEE
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNS---SIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~d-g~~Latgs~Dg~I~vWd~~~~---~~~~~l~~~~~~~v~s~~~~~~s~d~~~La 197 (1371)
+..++.+++|.+.|+.++|+| . |..||+|+.|+.|++|+...+ .+...+...++..+.++++ +|.+.+|+
T Consensus 4 l~~~~~~~gh~~r~W~~awhp---~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw---sp~g~~La 77 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHP---GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW---SPHGRYLA 77 (312)
T ss_pred ceeEEeecCCCCcEEEEEecc---CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee---cCCCcEEE
Confidence 456778899999999999999 5 779999999999999999853 3344454555566777777 89999999
Q ss_pred EEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCC
Q 000654 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1371)
Q Consensus 198 sgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~D 277 (1371)
+|+.|.++.||.-. ....+.+..+.||+..|.+++|+++|.+||+||.|
T Consensus 78 ~aSFD~t~~Iw~k~-------------------------------~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD 126 (312)
T KOG0645|consen 78 SASFDATVVIWKKE-------------------------------DGEFECVATLEGHENEVKCVAWSASGNYLATCSRD 126 (312)
T ss_pred EeeccceEEEeecC-------------------------------CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC
Confidence 99999999999866 12577889999999999999999999999999999
Q ss_pred CcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEEEEEeCCCeEEEEeCC-C---cEEEEEeeccCcCE
Q 000654 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSD-G---KQLKMIKEHIGRGI 351 (1371)
Q Consensus 278 g~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~I~VWd~~-g---~~l~~l~~h~~~~V 351 (1371)
++|.||.+..... .+... .+.+|...|..+.|+| .+|++++.|.+|++|.-. + .+++++.+|.. .|
T Consensus 127 KSVWiWe~deddE-----fec~a--VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TV 198 (312)
T KOG0645|consen 127 KSVWIWEIDEDDE-----FECIA--VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TV 198 (312)
T ss_pred CeEEEEEecCCCc-----EEEEe--eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eE
Confidence 9999999986554 55554 8999999999999997 899999999999999872 3 57899999999 69
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCC
Q 000654 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1371)
Q Consensus 352 ~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~ 431 (1371)
|+++|++.|..|++++.|++++||.+... .-..|+..+..++|. ++
T Consensus 199 W~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---------------------------------~~~~~sr~~Y~v~W~-~~ 244 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGTVSIWRLYTD---------------------------------LSGMHSRALYDVPWD-NG 244 (312)
T ss_pred EEEEecCCCceEEEecCCcceEeeeeccC---------------------------------cchhcccceEeeeec-cc
Confidence 99999999999999999999999986310 001344567778887 55
Q ss_pred cEEEEEcCCcEEEEEeecC-CCceeEEeE--eecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEc
Q 000654 432 TLYIATNHGYLYHTKLCDM-DSVNWNKIL--QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1371)
Q Consensus 432 ~llv~t~~G~i~~~~l~~~-~~~~w~~i~--~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~ 502 (1371)
.+..+++++.+..++-.+. ....|..+. ...++..|.++...+ ...++|++|+.||.+++|.+.
T Consensus 245 ~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p-------~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 245 VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP-------KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC-------CCCCceeecCCCceEEEEEec
Confidence 5555567777766554432 112344333 223455666665533 236899999999999999874
No 30
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=9e-27 Score=245.41 Aligned_cols=295 Identities=15% Similarity=0.224 Sum_probs=238.9
Q ss_pred eeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEE
Q 000654 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1371)
Q Consensus 120 v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasg 199 (1371)
++++...+|+||...|.++.|++ |.++|++++.||.+.|||.-+.....-++-+. ..+...+| +|.++++|.|
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s-~WVMtCA~---sPSg~~VAcG 115 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS-SWVMTCAY---SPSGNFVACG 115 (343)
T ss_pred eeeeeEEEecccccceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEecCc-eeEEEEEE---CCCCCeEEec
Confidence 34666789999999999999999 99999999999999999998877766665543 35666666 8999999999
Q ss_pred eCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCc
Q 000654 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1371)
Q Consensus 200 s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~ 279 (1371)
+-|+...||++.+.+.. ...+....+.+|++.+.++.|.+| ..|+|+|.|.+
T Consensus 116 GLdN~Csiy~ls~~d~~---------------------------g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~T 167 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAE---------------------------GNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMT 167 (343)
T ss_pred CcCceeEEEeccccccc---------------------------ccceeeeeecCccceeEEEEEcCC-CceEecCCCce
Confidence 99999999999822110 123445678999999999999885 57899999999
Q ss_pred EEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEE
Q 000654 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCL 355 (1371)
Q Consensus 280 VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~ 355 (1371)
.-+||+++++. . ..+.||.+.|.++.+. ++.+++|+-|++.++||+ .+.++++|.+|..+ |.++.
T Consensus 168 CalWDie~g~~-----~-----~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD-INsv~ 236 (343)
T KOG0286|consen 168 CALWDIETGQQ-----T-----QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD-INSVR 236 (343)
T ss_pred EEEEEcccceE-----E-----EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc-cceEE
Confidence 99999999876 3 3888999999999998 489999999999999999 89999999999995 99999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCC-CCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEE
Q 000654 356 YDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY 434 (1371)
Q Consensus 356 ~spdg~~L~Tgg~Dg~I~lwdl~~-~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~ll 434 (1371)
|.|+|.-++||++|++.|+||++. +.+. +|+ -+.....|++++|+..|++|
T Consensus 237 ffP~G~afatGSDD~tcRlyDlRaD~~~a----------------~ys------------~~~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 237 FFPSGDAFATGSDDATCRLYDLRADQELA----------------VYS------------HDSIICGITSVAFSKSGRLL 288 (343)
T ss_pred EccCCCeeeecCCCceeEEEeecCCcEEe----------------eec------------cCcccCCceeEEEcccccEE
Confidence 999999999999999999999963 1111 111 01233569999999999877
Q ss_pred EEE-cCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEE
Q 000654 435 IAT-NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1371)
Q Consensus 435 v~t-~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwd 500 (1371)
.++ .+.... +|+.-...-.-++.+| +..|.|+.+ ++++--+++|+=|..++||.
T Consensus 289 fagy~d~~c~---vWDtlk~e~vg~L~GH-eNRvScl~~--------s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 289 FAGYDDFTCN---VWDTLKGERVGVLAGH-ENRVSCLGV--------SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EeeecCCcee---EeeccccceEEEeecc-CCeeEEEEE--------CCCCcEEEecchhHheeecC
Confidence 764 555555 4554333323445555 678999988 56778899999999999994
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=2.2e-28 Score=288.75 Aligned_cols=267 Identities=17% Similarity=0.306 Sum_probs=221.6
Q ss_pred CcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECC
Q 000654 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1371)
Q Consensus 18 ~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd 96 (1371)
..++|..|+ +| ..++|+|. |..|++|.+...++ ..++... +-.. +|- -+.|
T Consensus 379 ~~v~ca~fS--dd----ssmlA~Gf~dS~i~~~Sl~p~kl-~~lk~~~--------~l~~-----~d~--------~sad 430 (707)
T KOG0263|consen 379 QGVTCAEFS--DD----SSMLACGFVDSSVRVWSLTPKKL-KKLKDAS--------DLSN-----IDT--------ESAD 430 (707)
T ss_pred CcceeEeec--CC----cchhhccccccEEEEEecchhhh-ccccchh--------hhcc-----ccc--------cccc
Confidence 458899999 88 67999998 69999999865432 3333211 1100 110 0112
Q ss_pred CeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecC
Q 000654 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1371)
Q Consensus 97 ~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~ 176 (1371)
-.+.+.|... .....++.||.++|..+.|+| +.++|++++.|+++|+|.+.+...+-.+.+|
T Consensus 431 ~~~~~~D~~~---------------~~~~~~L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH 492 (707)
T KOG0263|consen 431 VDVDMLDDDS---------------SGTSRTLYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH 492 (707)
T ss_pred hhhhhccccC---------------CceeEEeecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCC
Confidence 2233333332 223445889999999999999 9999999999999999999999998888855
Q ss_pred CcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEeccc
Q 000654 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1371)
Q Consensus 177 ~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~ 256 (1371)
...++.+.| +|.|.++|+++.|++.++|... ...+.+.+.||-
T Consensus 493 -~~PVwdV~F---~P~GyYFatas~D~tArLWs~d---------------------------------~~~PlRifaghl 535 (707)
T KOG0263|consen 493 -LAPVWDVQF---APRGYYFATASHDQTARLWSTD---------------------------------HNKPLRIFAGHL 535 (707)
T ss_pred -CcceeeEEe---cCCceEEEecCCCceeeeeecc---------------------------------cCCchhhhcccc
Confidence 446788887 7889999999999999999988 566788899999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEe
Q 000654 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (1371)
Q Consensus 257 ~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd 334 (1371)
+.|.|+.|+|+..|+++||.|++||+||+.++.. ++ .+.||.++|.+++|+ +.+|++|++|+.|.+||
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-----VR-----iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-----VR-----IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcE-----EE-----EecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 9999999999999999999999999999999876 44 889999999999999 69999999999999999
Q ss_pred C-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 335 S-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 335 ~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
+ .|+++..+.+|.+ .|.++.|+.+|..||+||.|.+|++||+.
T Consensus 606 l~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 606 LANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred cCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 9 8899999999988 79999999999999999999999999994
No 32
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=8.5e-25 Score=257.81 Aligned_cols=534 Identities=14% Similarity=0.185 Sum_probs=358.5
Q ss_pred CccEEEEeCCCCc-------ccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeE-EEEEEeecCccEEEEEee
Q 000654 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTL-IRPFQVFHGIRLHGISCN 74 (1371)
Q Consensus 3 D~tV~iWdl~~~~-------h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~-l~~~~~~~~~~I~~i~~s 74 (1371)
|++..+||..+.. +...|+|++-. ..++.++++..|.+|- -|+. .+.+..|. ..|+-+..-
T Consensus 55 gksfqvYd~~kl~ll~vs~~lp~~I~alas~--------~~~vy~A~g~~i~~~~--rgk~i~~~~~~~~-a~v~~l~~f 123 (910)
T KOG1539|consen 55 GKSFQVYDVNKLNLLFVSKPLPDKITALASD--------KDYVYVASGNKIYAYA--RGKHIRHTTLLHG-AKVHLLLPF 123 (910)
T ss_pred CceEEEEeccceEEEEecCCCCCceEEEEec--------CceEEEecCcEEEEEE--ccceEEEEecccc-ceEEEEeee
Confidence 6778899988765 56679999977 4689999999999987 3433 34555554 478877644
Q ss_pred ccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEE
Q 000654 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1371)
Q Consensus 75 ~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs 154 (1371)
| +.++++..++.+.||+..... .. .. .+ +..++.-.+.|.++.--+ .-=+.++.|+
T Consensus 124 ---------G---e~lia~d~~~~l~vw~~s~~~--~e-----~~--l~-~~~~~~~~~~Ital~HP~--TYLNKIvvGs 179 (910)
T KOG1539|consen 124 ---------G---EHLIAVDISNILFVWKTSSIQ--EE-----LY--LQ-STFLKVEGDFITALLHPS--TYLNKIVVGS 179 (910)
T ss_pred ---------c---ceEEEEEccCcEEEEEecccc--cc-----cc--cc-ceeeeccCCceeeEecch--hheeeEEEee
Confidence 2 268888889999999998631 00 00 11 122222333477775422 1124678999
Q ss_pred CCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCc
Q 000654 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1371)
Q Consensus 155 ~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1371)
.+|.+++|++.+++.+.+++... ..+.++. .+|--..+|.|..+|+|.+++++
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ie---qsPaLDVVaiG~~~G~ViifNlK----------------------- 232 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFF-SRITAIE---QSPALDVVAIGLENGTVIIFNLK----------------------- 232 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccc-cceeEec---cCCcceEEEEeccCceEEEEEcc-----------------------
Confidence 99999999999999999998766 3444443 36777899999999999999999
Q ss_pred ceeeecccccceeeEEEEecccCCEEEEEEcCCCC-EEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEE
Q 000654 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1371)
Q Consensus 235 ~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~-~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~ 313 (1371)
.++.+..++.-.+.|+.++|..||. .+++++..|.+.+||+...+. .. .....|.+.|..
T Consensus 233 ----------~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl-----~~----v~~nah~~sv~~ 293 (910)
T KOG1539|consen 233 ----------FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL-----IN----VTRNAHYGSVTG 293 (910)
T ss_pred ----------cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee-----ee----eeeccccCCccc
Confidence 5677777775469999999999987 467777789999999998765 22 255688888888
Q ss_pred EEEc--CCEEEEEeCCCeEEEEeC---CC--cEEEEEeeccCcCEEEEEEc-CCCCEEEEEECCCcEEEEEcCCCCcccc
Q 000654 314 CCLT--DSFIITAGEDCTCRVWGS---DG--KQLKMIKEHIGRGIWRCLYD-SLSSLLVTAGFDSAIKVHQFQAFLPGSL 385 (1371)
Q Consensus 314 l~~s--~~~L~Sgs~Dg~I~VWd~---~g--~~l~~l~~h~~~~V~sl~~s-pdg~~L~Tgg~Dg~I~lwdl~~~~~~~l 385 (1371)
+.|. ...++|++.|..+++|=. +| +.++.-.+|.. +-.++.|. .++..+.+++.|++++.+++......+-
T Consensus 294 ~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~ 372 (910)
T KOG1539|consen 294 ATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQE 372 (910)
T ss_pred ceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC-CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHh
Confidence 8887 479999999999998865 34 45666678888 79999986 6788999999999999998832111000
Q ss_pred c--CCCccccccCCccEEEeeecCCcccee---eccCCCccEEEEEEec------CCcEEEEEcCCcEEEEEeecCCCce
Q 000654 386 E--SHPEAKEFNGRTEIFSIKIPNFSEQIR---LTDSKSEYVRCLHLTS------EDTLYIATNHGYLYHTKLCDMDSVN 454 (1371)
Q Consensus 386 ~--~~~~~~~~~~~~~i~s~~~~~~~~~~~---~~~~~~~~V~~lafs~------d~~llv~t~~G~i~~~~l~~~~~~~ 454 (1371)
- .|.. ...+.++ ...-.-.+|..+++.. ++.+.+..+.-..+.|++.+...++
T Consensus 373 l~~~~~~----------------~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~ 436 (910)
T KOG1539|consen 373 LGQLHNK----------------KRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR 436 (910)
T ss_pred hcccccc----------------cccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence 0 0100 0000000 0011123344555443 1223333455666777776665555
Q ss_pred eEEeEee--cCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeec
Q 000654 455 WNKILQV--SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKS 532 (1371)
Q Consensus 455 w~~i~~~--~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s 532 (1371)
|..-... .....+.++.+ +..+++.++|...|.|.+|++++|-...... -...+.+.+.++ +..
T Consensus 437 ~~L~~~~~~~~~~~~~av~v--------s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~----~~~ah~~~V~gl--a~D 502 (910)
T KOG1539|consen 437 HVLDPKRFKKDDINATAVCV--------SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG----DSPAHKGEVTGL--AVD 502 (910)
T ss_pred EEecCccccccCcceEEEEE--------eccCceEEEeccCCeEEEEEcccCeeecccc----cCccccCceeEE--Eec
Confidence 5221110 02334444444 3558999999999999999999876543221 112233444443 233
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCCcccccc-------------------Cccceee--------eeeeeecccCCcEEE
Q 000654 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYES-------------------SKTNNVF--------LVAEFSSCFGARIMC 585 (1371)
Q Consensus 533 ~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~-------------------~~~~~l~--------l~~~~~~~h~~~Its 585 (1371)
.-++.+++++.+|.++.|++........... .....+. ...+| .+|+.+|++
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f-~gh~nritd 581 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF-WGHGNRITD 581 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh-hccccceee
Confidence 4457799999999999999875431111000 0001111 11221 379999999
Q ss_pred EEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccccccccccCCcCeEEEEEeecCCCceEEEEEcCC-CcE
Q 000654 586 LDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGD-GCI 664 (1371)
Q Consensus 586 l~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~g~D-G~v 664 (1371)
++|||||++|++++.|++|++||+.++.. + . +.+--...+++.|+ |++.+|+|+-.| .-|
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDlpt~~l----------I---D---~~~vd~~~~sls~S---PngD~LAT~Hvd~~gI 642 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDLPTGTL----------I---D---GLLVDSPCTSLSFS---PNGDFLATVHVDQNGI 642 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEeccCcce----------e---e---eEecCCcceeeEEC---CCCCEEEEEEecCceE
Confidence 99999999999999999999999998631 1 1 11112567888888 788999999999 568
Q ss_pred EEEE
Q 000654 665 CYLE 668 (1371)
Q Consensus 665 ~iw~ 668 (1371)
.+|.
T Consensus 643 ylWs 646 (910)
T KOG1539|consen 643 YLWS 646 (910)
T ss_pred EEEE
Confidence 8887
No 33
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=8e-25 Score=258.00 Aligned_cols=468 Identities=15% Similarity=0.187 Sum_probs=302.7
Q ss_pred CCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCC
Q 000654 34 SLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1371)
Q Consensus 34 ~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~ 113 (1371)
+.-++.++-|....+||++.-.++..-+.+.. .|++++-. . ..+.++.++.|.+|.-..
T Consensus 46 ~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~-~I~alas~-------~------~~vy~A~g~~i~~~~rgk------- 104 (910)
T KOG1539|consen 46 STFYVTTCVGKSFQVYDVNKLNLLFVSKPLPD-KITALASD-------K------DYVYVASGNKIYAYARGK------- 104 (910)
T ss_pred ceEEEEEecCceEEEEeccceEEEEecCCCCC-ceEEEEec-------C------ceEEEecCcEEEEEEccc-------
Confidence 34566667799999999988777665544444 79999865 3 244445567788886531
Q ss_pred CCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe-EE---EEEecCCcceEEEEEeecc
Q 000654 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-II---LEVHSPERCLLYSMKLWGD 189 (1371)
Q Consensus 114 ~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~-~~---~~l~~~~~~~v~s~~~~~~ 189 (1371)
...+...+|...|.-+.. =|..+..+..++.+.+|+...++ .. ..+.......+.++. | .
T Consensus 105 ---------~i~~~~~~~~a~v~~l~~-----fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H-P 168 (910)
T KOG1539|consen 105 ---------HIRHTTLLHGAKVHLLLP-----FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H-P 168 (910)
T ss_pred ---------eEEEEeccccceEEEEee-----ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c-c
Confidence 334566677777766654 45778888899999999997741 11 111111222233332 1 1
Q ss_pred CCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCC
Q 000654 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (1371)
Q Consensus 190 s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~ 269 (1371)
+--=+.++.|+..|.+++|+++ +++.++++.++...|+++.=+|-=.
T Consensus 169 ~TYLNKIvvGs~~G~lql~Nvr---------------------------------t~K~v~~f~~~~s~IT~ieqsPaLD 215 (910)
T KOG1539|consen 169 STYLNKIVVGSSQGRLQLWNVR---------------------------------TGKVVYTFQEFFSRITAIEQSPALD 215 (910)
T ss_pred hhheeeEEEeecCCcEEEEEec---------------------------------cCcEEEEecccccceeEeccCCcce
Confidence 2223578999999999999999 7889999999999999999999888
Q ss_pred EEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecC-CccEEEEEEc---CCEEEEEeCCCeEEEEeCCCcEE-EEE-
Q 000654 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQL-KMI- 343 (1371)
Q Consensus 270 ~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh-~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~~g~~l-~~l- 343 (1371)
.++.|-.+|+|.+++++.++. + .-+.| .++|+++.|. ...+++|+..|.+.+||++++.+ ..+
T Consensus 216 VVaiG~~~G~ViifNlK~dki-----l------~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~ 284 (910)
T KOG1539|consen 216 VVAIGLENGTVIIFNLKFDKI-----L------MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR 284 (910)
T ss_pred EEEEeccCceEEEEEcccCcE-----E------EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee
Confidence 999999999999999998766 2 33445 5999999998 36889999999999999965544 334
Q ss_pred eeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEE
Q 000654 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVR 423 (1371)
Q Consensus 344 ~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~ 423 (1371)
..|.+ +|..+.|.|....|+|.+.|..+++|-.+.. ....+.++.-.+|+.+..
T Consensus 285 nah~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~-------------------------dg~pR~LR~R~GHs~Pp~ 338 (910)
T KOG1539|consen 285 NAHYG-SVTGATFLPGEPVLVTAGADNSLKVWVFDSG-------------------------DGVPRLLRSRGGHSAPPS 338 (910)
T ss_pred ccccC-CcccceecCCCceEeeccCCCceeEEEeeCC-------------------------CCcchheeeccCCCCCch
Confidence 46777 6999999999999999999999999966310 011233444568888899
Q ss_pred EEEEe-cCCcEEEEEcCCc-EEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEE
Q 000654 424 CLHLT-SEDTLYIATNHGY-LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (1371)
Q Consensus 424 ~lafs-~d~~llv~t~~G~-i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi 501 (1371)
++.|. .++.++....... +..+.+..... -+++-+.+ .-...+.+.+...
T Consensus 339 ~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~--~~~l~~~~--------------------------~~~~~kk~~~~~~ 390 (910)
T KOG1539|consen 339 CIRFYGSQGHFILSAKQDRTLRSFSVISESQ--SQELGQLH--------------------------NKKRAKKVNVFST 390 (910)
T ss_pred heeeeccCcEEEEecccCcchhhhhhhHHHH--hHhhcccc--------------------------cccccccccccch
Confidence 99988 4666655543332 22211111000 00000000 0000111111111
Q ss_pred cCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCC
Q 000654 502 VGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGA 581 (1371)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~ 581 (1371)
..-+..+...+...+..+ . ...+.+.+.-.+...+.|+...... ....++..-....+.
T Consensus 391 ~~~k~p~i~~fa~~~~RE--~----------~W~Nv~~~h~~~~~~~tW~~~n~~~---------G~~~L~~~~~~~~~~ 449 (910)
T KOG1539|consen 391 EKLKLPPIVEFAFENARE--K----------EWDNVITAHKGKRSAYTWNFRNKTS---------GRHVLDPKRFKKDDI 449 (910)
T ss_pred hhhcCCcceeeecccchh--h----------hhcceeEEecCcceEEEEeccCccc---------ccEEecCccccccCc
Confidence 110101111111110100 0 1123344445567788999875321 111222211123567
Q ss_pred cEEEEEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccccccc-cccCCcCeEEEEEeecCCCceEEEEEcC
Q 000654 582 RIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFK-GAHGISTVSTLSVAKLRSNQTEIRSTGG 660 (1371)
Q Consensus 582 ~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~-g~hg~~~VTsV~f~~~~~~~~~L~T~g~ 660 (1371)
.+++++.++.|++.+.|+..|+|-+|+++++.. ...+.. .+|. ..|+.|+.. .-...++|++.
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------------r~sf~~~~ah~-~~V~gla~D---~~n~~~vsa~~ 513 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------------RKSFGDSPAHK-GEVTGLAVD---GTNRLLVSAGA 513 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCee------------ecccccCcccc-CceeEEEec---CCCceEEEccC
Confidence 899999999999999999999999999998622 111111 1565 789999887 33478999999
Q ss_pred CCcEEEEEEecCC
Q 000654 661 DGCICYLEYDKDR 673 (1371)
Q Consensus 661 DG~v~iw~l~~~~ 673 (1371)
||.+++|++....
T Consensus 514 ~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 514 DGILKFWDFKKKV 526 (910)
T ss_pred cceEEEEecCCcc
Confidence 9999999988754
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=4.3e-29 Score=266.54 Aligned_cols=259 Identities=18% Similarity=0.328 Sum_probs=219.0
Q ss_pred CCCccEEEEeCCCCc-------ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEE
Q 000654 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1371)
Q Consensus 1 s~D~tV~iWdl~~~~-------h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~ 72 (1371)
+.|+||+|||..+.+ |.|.|.|+.|. .+++++|+ |.+|+|||+++|+++.++-.|-. .|.++.
T Consensus 214 lrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--------~rviisGSSDsTvrvWDv~tge~l~tlihHce-aVLhlr 284 (499)
T KOG0281|consen 214 LRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--------ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE-AVLHLR 284 (499)
T ss_pred cccCceEEeccccHHHHHhhhcCCCcEEeeecc--------ceEEEecCCCceEEEEeccCCchhhHHhhhcc-eeEEEE
Confidence 479999999998876 89999999998 57999998 79999999999999998876655 899999
Q ss_pred eeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEE
Q 000654 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1371)
Q Consensus 73 ~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Lat 152 (1371)
|+ . | .++.++.|.++++||+..+. ...+.+.+.||...|+.+.|+. +++++
T Consensus 285 f~-------n-g----~mvtcSkDrsiaVWdm~sps------------~it~rrVLvGHrAaVNvVdfd~-----kyIVs 335 (499)
T KOG0281|consen 285 FS-------N-G----YMVTCSKDRSIAVWDMASPT------------DITLRRVLVGHRAAVNVVDFDD-----KYIVS 335 (499)
T ss_pred Ee-------C-C----EEEEecCCceeEEEeccCch------------HHHHHHHHhhhhhheeeecccc-----ceEEE
Confidence 98 3 2 55555569999999998643 2566778999999999999954 79999
Q ss_pred EECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000654 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1371)
Q Consensus 153 gs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1371)
++.|.+|++|++.++..+..+.+|.+.+. ++.+ .+.++++|+.|++|++||+.
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHkRGIA-ClQY-----r~rlvVSGSSDntIRlwdi~--------------------- 388 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIA-CLQY-----RDRLVVSGSSDNTIRLWDIE--------------------- 388 (499)
T ss_pred ecCCceEEEEeccceeeehhhhcccccce-ehhc-----cCeEEEecCCCceEEEEecc---------------------
Confidence 99999999999999999999999888654 3433 68899999999999999999
Q ss_pred CcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEE
Q 000654 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1371)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~ 312 (1371)
.+..+..+.||+.-|.+|.| |.+.+++|..||+|++||+.....+ ......+...++..|.++|.
T Consensus 389 ------------~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldp-ra~~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 389 ------------CGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP-RAPASTLCLRTLVEHSGRVF 453 (499)
T ss_pred ------------ccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCC-cccccchHHHhhhhccceeE
Confidence 67888899999999999999 5678999999999999999886542 11111111136778999999
Q ss_pred EEEEcCCEEEEEeCCCeEEEEeC-CCcE
Q 000654 313 DCCLTDSFIITAGEDCTCRVWGS-DGKQ 339 (1371)
Q Consensus 313 ~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~ 339 (1371)
.+.|..-.+++++.|.+|.|||+ ++.+
T Consensus 454 rLQFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 454 RLQFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEeecceEEEeccCCCeEEEEEcCCCCc
Confidence 99999999999999999999999 5543
No 35
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.4e-25 Score=254.96 Aligned_cols=611 Identities=15% Similarity=0.138 Sum_probs=359.4
Q ss_pred eEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEE--CCCcEEEEECCC
Q 000654 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDISN 166 (1371)
Q Consensus 89 ~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs--~Dg~I~vWd~~~ 166 (1371)
.+++.-.+..|.+||.+. .+.-+.+..|..++++++|++ +|+++|+|- ....+++|++..
T Consensus 50 gl~aYpAGCvVVlfn~~~---------------~tQ~hlvnssRk~~t~vAfS~---~GryvatGEcG~~pa~kVw~la~ 111 (1080)
T KOG1408|consen 50 GLCAYPAGCVVVLFNVDS---------------CTQSHLVNSSRKPLTCVAFSQ---NGRYVATGECGRTPASKVWSLAF 111 (1080)
T ss_pred cceeeccCcEEEEEcccc---------------cchhheecccCcceeEEEEcC---CCcEEEecccCCCccceeeeecc
Confidence 456666678899999874 233445556778999999999 999999985 567899999998
Q ss_pred CeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeC--CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccc
Q 000654 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI--YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1371)
Q Consensus 167 ~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~--dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~ 244 (1371)
...+.++..|.. .+.+++| +|.+.++++.+. |-.|.+||++.+
T Consensus 112 h~vVAEfvdHKY-~vtcvaF---sp~~kyvvSVGsQHDMIVnv~dWr~N------------------------------- 156 (1080)
T KOG1408|consen 112 HGVVAEFVDHKY-NVTCVAF---SPGNKYVVSVGSQHDMIVNVNDWRVN------------------------------- 156 (1080)
T ss_pred ccchhhhhhccc-cceeeee---cCCCcEEEeeccccceEEEhhhhhhc-------------------------------
Confidence 887777766543 3445555 888999998654 445678888711
Q ss_pred ceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEE
Q 000654 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA 324 (1371)
Q Consensus 245 ~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sg 324 (1371)
. ...-..-...|..++|+.||.|++|.+. +.|++|.+...+. ....+ .+.|...-.-.+.+. .+++.+
T Consensus 157 --~-~~asnkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~K-ykdpi------Pl~gRs~~lg~lr~n-~f~ava 224 (1080)
T KOG1408|consen 157 --S-SGASNKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSK-YKDPI------PLPGRSYFLGNLRFN-EFLAVA 224 (1080)
T ss_pred --c-cccccccceeEEEEEEccCCceeeeeee-eeEEEEEeecccc-ccCCc------cccchhhhccccccc-hhhhhh
Confidence 0 0001123467889999999999998764 6899999987653 11111 222322222222221 122222
Q ss_pred e-------------CCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC-CCcccccCCCc
Q 000654 325 G-------------EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPE 390 (1371)
Q Consensus 325 s-------------~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~-~~~~~l~~~~~ 390 (1371)
+ ..|.+.-|. +.+++.+.-.-......||+.+ .++++.|+.+|.|++|+... ..+.++.-..
T Consensus 225 Cg~gicAestfait~qGhLvEFS-sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~h- 300 (1080)
T KOG1408|consen 225 CGVGICAESTFAITAQGHLVEFS-SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSH- 300 (1080)
T ss_pred hcCcccccceEEEecccceeeec-hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhcccccccc-
Confidence 1 122222222 1111111111111135677765 57999999999999998743 1122221100
Q ss_pred cccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCc-EEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEE
Q 000654 391 AKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIIC 469 (1371)
Q Consensus 391 ~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~-llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ 469 (1371)
.. +..+-.+.-++ .+....-++.....-.+.|.+... +.+.-++-.+|.|++.+.+..--.. .-..+...|+.
T Consensus 301 al----g~d~a~~~q~~-~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~-s~lyHS~ciW~ 374 (1080)
T KOG1408|consen 301 AL----GSDTANLSQPE-PKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCS-SMLYHSACIWD 374 (1080)
T ss_pred cc----ccchhhccccc-ccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccccccee-eeeeccceeee
Confidence 00 00000000000 000001111112234566777554 4445578889988887765432111 11233556666
Q ss_pred EeecCCCC---CCCCCCCCEEEEEeCCCcEEEEEEcCCcccccee-------e--------eeee-------------cc
Q 000654 470 MDLLSNEP---KYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLS-------F--------TFTW-------------SA 518 (1371)
Q Consensus 470 ld~~~~~~---~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~-------~--------~~~~-------------~~ 518 (1371)
++..+-.+ ...+-...-+.+.+.|++|++|++.......... + ...+ ..
T Consensus 375 Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s 454 (1080)
T KOG1408|consen 375 VENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVS 454 (1080)
T ss_pred eccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchh
Confidence 65554220 0011123457889999999999997522111000 0 0000 00
Q ss_pred -CcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeec---CCCE
Q 000654 519 -GIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF---EDEV 594 (1371)
Q Consensus 519 -~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~sp---dg~l 594 (1371)
......+- .++.+|++++|++|..-|.|+++++..... ..+..+|..+|.|+.||. ..++
T Consensus 455 ~~d~r~G~R-~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---------------~~~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 455 TCDSRFGFR-ALAVSPDGQHLASGDRGGNLRVYDLQELEY---------------TCFMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred hcCcccceE-EEEECCCcceecccCccCceEEEEehhhhh---------------hhheecccceeEEEeecCchhhhHh
Confidence 00001111 257799999999999999999999874321 122447999999999994 3689
Q ss_pred EEEecCCCeEEEEEcCcccccccccccccccccccccccccCCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEecCCc
Q 000654 595 LFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRE 674 (1371)
Q Consensus 595 LatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~~~~ 674 (1371)
||+|++|.-|.|||+..+ +.+.+++. -|. ..||+|.|...+-+ ..++++|.|..|.+=..++...
T Consensus 519 LASasrdRlIHV~Dv~rn------------y~l~qtld-~HS-ssITsvKFa~~gln-~~MiscGADksimFr~~qk~~~ 583 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRN------------YDLVQTLD-GHS-SSITSVKFACNGLN-RKMISCGADKSIMFRVNQKASS 583 (1080)
T ss_pred hhhccCCceEEEEecccc------------cchhhhhc-ccc-cceeEEEEeecCCc-eEEEeccCchhhheehhccccC
Confidence 999999999999999864 34445554 343 68999999964433 7899999999886654443332
Q ss_pred ceeeeeccccceeeeeEeEEcCCCccCcccceEEEeecCccEEEEeCccceEEEEeeccCcccccccccCCCCCCceEEE
Q 000654 675 SLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFA 754 (1371)
Q Consensus 675 ~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~l~v~Gf~s~~fvvWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~fa 754 (1371)
-..|....+.-....+..+..++ ...+++++-.++
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vdp-----~~k~v~t~cQDr---------------------------------------- 618 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVDP-----TSKLVVTVCQDR---------------------------------------- 618 (1080)
T ss_pred ceeccccccccccceEEEeeeCC-----CcceEEEEeccc----------------------------------------
Confidence 23333222222233333333321 122344444444
Q ss_pred EEeccEEEEEEeeeccCcCCccccccccCCC-ccceeEeEeecccccccccccccCCCCCeEEEEccCCCeEEEEEecCC
Q 000654 755 YVKDEVIHIHRHWISNGERKMFPKNLHMQFH-GREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPG 833 (1371)
Q Consensus 755 ~~k~~~i~i~~~~~~~~~~~~~~~~l~~~~H-greI~sv~~s~~~~~~~~~~~~~~~~~~~~iaTGseD~tIrl~~~~~~ 833 (1371)
.|+||.+....+. +.|++ .+.| |.-|+- ..- ..+-||||.+-|.|+.+++|..
T Consensus 619 -----nirif~i~sgKq~-k~FKg---s~~~eG~lIKv-~lD---------------PSgiY~atScsdktl~~~Df~s- 672 (1080)
T KOG1408|consen 619 -----NIRIFDIESGKQV-KSFKG---SRDHEGDLIKV-ILD---------------PSGIYLATSCSDKTLCFVDFVS- 672 (1080)
T ss_pred -----ceEEEecccccee-eeecc---cccCCCceEEE-EEC---------------CCccEEEEeecCCceEEEEecc-
Confidence 4444444222211 11111 1244 444442 221 2267999999999999999987
Q ss_pred CCcccceeccccccCccceeeeeeecccccccccccCCCccccccccccccCCCCEEEEEecccceEEEEEEEec
Q 000654 834 FENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRHR 908 (1371)
Q Consensus 834 ~~~~~~~~~l~~H~~gsav~~i~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~ll~S~g~d~~i~vW~~~~~ 908 (1371)
+.....+.+|. -+|+.+.|. .|-..|+|+++|+-|.||++-..
T Consensus 673 ---gEcvA~m~GHs--E~VTG~kF~---------------------------nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 673 ---GECVAQMTGHS--EAVTGVKFL---------------------------NDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ---chhhhhhcCcc--hheeeeeec---------------------------ccchhheeecCCceEEEEECchh
Confidence 57888999999 999999995 14567999999999999998654
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=4.9e-27 Score=252.44 Aligned_cols=294 Identities=18% Similarity=0.295 Sum_probs=240.8
Q ss_pred eeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEE
Q 000654 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1371)
Q Consensus 120 v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasg 199 (1371)
..+++.+.+.+|.+||.|+++.| .+..+++|+.|++++|||+.+|+...++.++.. .+..+++ ++...+|+++
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vav---S~rHpYlFs~ 211 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAV---SKRHPYLFSA 211 (460)
T ss_pred CcceehhhhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeee---cccCceEEEe
Confidence 34778889999999999999999 889999999999999999999999999987754 3455665 6777899999
Q ss_pred eCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCc
Q 000654 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1371)
Q Consensus 200 s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~ 279 (1371)
+.|++|+.||++ ..+.++.+.||-..|.+++.+|.-..|+||+.|.+
T Consensus 212 gedk~VKCwDLe---------------------------------~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst 258 (460)
T KOG0285|consen 212 GEDKQVKCWDLE---------------------------------YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDST 258 (460)
T ss_pred cCCCeeEEEech---------------------------------hhhhHHHhccccceeEEEeccccceeEEecCCcce
Confidence 999999999999 56778888999999999999999999999999999
Q ss_pred EEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEE
Q 000654 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY 356 (1371)
Q Consensus 280 VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~ 356 (1371)
+|+||+++... + .++.||..+|..+.+. +..++||+.|++|++||+ .|+...++..|.. .|.+++.
T Consensus 259 ~RvWDiRtr~~-----V-----~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~l 327 (460)
T KOG0285|consen 259 IRVWDIRTRAS-----V-----HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCL 327 (460)
T ss_pred EEEeeecccce-----E-----EEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEec
Confidence 99999999765 2 3889999999999998 789999999999999999 8999999998888 6999999
Q ss_pred cCCCCEEEEEECCCcEEEEEc-CCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEE
Q 000654 357 DSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1371)
Q Consensus 357 spdg~~L~Tgg~Dg~I~lwdl-~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv 435 (1371)
+|....+|+++.| .|+-|++ .+..++.+. +|...|.+++...|+.+++
T Consensus 328 hP~e~~fASas~d-nik~w~~p~g~f~~nls------------------------------gh~~iintl~~nsD~v~~~ 376 (460)
T KOG0285|consen 328 HPKENLFASASPD-NIKQWKLPEGEFLQNLS------------------------------GHNAIINTLSVNSDGVLVS 376 (460)
T ss_pred CCchhhhhccCCc-cceeccCCccchhhccc------------------------------cccceeeeeeeccCceEEE
Confidence 9999999999988 6899998 444443333 4556789999999999999
Q ss_pred EEcCCcEEEEEeecCCCceeE-EeEe-ec--CCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcC
Q 000654 436 ATNHGYLYHTKLCDMDSVNWN-KILQ-VS--EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1371)
Q Consensus 436 ~t~~G~i~~~~l~~~~~~~w~-~i~~-~~--~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~ 503 (1371)
++.+|.+.+|+..+..+.+.. .+.+ +. ....|.+..+. ..+..|++|..|.+|++|.-+.
T Consensus 377 G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD--------ktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD--------KTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cCCceEEEEEecCcCcccccccccccCCccccccceeEEeec--------ccCceEEeccCCcceEEEeccc
Confidence 999999987765443332211 1111 11 12334443332 2356899999999999998654
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=234.57 Aligned_cols=282 Identities=18% Similarity=0.245 Sum_probs=228.0
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC---eEEEEEEeecCccEEEEEeeccccccCCCCcceeeEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg---~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~l 91 (1371)
|.+.|..++++ |. .|.+||+|+ |..|+||+...+ .+...+...+...|..++|+ |.| ++|
T Consensus 13 h~~r~W~~awh--p~---~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-------p~g----~~L 76 (312)
T KOG0645|consen 13 HKDRVWSVAWH--PG---KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-------PHG----RYL 76 (312)
T ss_pred CCCcEEEEEec--cC---CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec-------CCC----cEE
Confidence 67889999999 84 255888877 799999998853 34444433344489999999 998 677
Q ss_pred EEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe--
Q 000654 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-- 168 (1371)
Q Consensus 92 a~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~-- 168 (1371)
++++ |.++.||.-..+. ++.+.++.||...|.+++|++ +|.+|||++.|++|-||.+..+.
T Consensus 77 a~aSFD~t~~Iw~k~~~e-------------fecv~~lEGHEnEVK~Vaws~---sG~~LATCSRDKSVWiWe~deddEf 140 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGE-------------FECVATLEGHENEVKCVAWSA---SGNYLATCSRDKSVWIWEIDEDDEF 140 (312)
T ss_pred EEeeccceEEEeecCCCc-------------eeEEeeeeccccceeEEEEcC---CCCEEEEeeCCCeEEEEEecCCCcE
Confidence 7776 9999999876544 899999999999999999999 99999999999999999997543
Q ss_pred -EEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccccee
Q 000654 169 -IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1371)
Q Consensus 169 -~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~ 247 (1371)
+...++.|.. -+..+.+ .|...+|++++.|++|++|+-. + .....
T Consensus 141 ec~aVL~~Htq-DVK~V~W---HPt~dlL~S~SYDnTIk~~~~~-----------------------------~-dddW~ 186 (312)
T KOG0645|consen 141 ECIAVLQEHTQ-DVKHVIW---HPTEDLLFSCSYDNTIKVYRDE-----------------------------D-DDDWE 186 (312)
T ss_pred EEEeeeccccc-cccEEEE---cCCcceeEEeccCCeEEEEeec-----------------------------C-CCCee
Confidence 3445554433 2334444 5677899999999999999876 0 12567
Q ss_pred eEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCC
Q 000654 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED 327 (1371)
Q Consensus 248 ~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~D 327 (1371)
..+.+.+|+..|.+++|.+.|..|+++++|++|+||..... .-.-|...++.+.|....|+|++.|
T Consensus 187 c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--------------~~~~~sr~~Y~v~W~~~~IaS~ggD 252 (312)
T KOG0645|consen 187 CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--------------LSGMHSRALYDVPWDNGVIASGGGD 252 (312)
T ss_pred EEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--------------cchhcccceEeeeecccceEeccCC
Confidence 88999999999999999999999999999999999997642 3345778899999998899999999
Q ss_pred CeEEEEeCCCc---E----E-EEEeeccCcCEEEEEEcCC-CCEEEEEECCCcEEEEEcC
Q 000654 328 CTCRVWGSDGK---Q----L-KMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 328 g~I~VWd~~g~---~----l-~~l~~h~~~~V~sl~~spd-g~~L~Tgg~Dg~I~lwdl~ 378 (1371)
+.|++|.-... + + +.-..|.. .|++++|+|. .++|++||+||.+++|.+.
T Consensus 253 ~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 253 DAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CEEEEEEecCCCCCchHHHHHhhhccccc-ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999987221 1 1 23345777 5999999995 6799999999999999873
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=2.4e-26 Score=247.21 Aligned_cols=280 Identities=19% Similarity=0.325 Sum_probs=239.9
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|++.|.||++. |. ..++++|+ |++|.|||+++|++..++.+|.. .|.++++| +-- .+++.+.
T Consensus 150 HlgWVr~vavd--P~----n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS-------~rH---pYlFs~g 212 (460)
T KOG0285|consen 150 HLGWVRSVAVD--PG----NEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVS-------KRH---PYLFSAG 212 (460)
T ss_pred ccceEEEEeeC--CC----ceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeec-------ccC---ceEEEec
Confidence 89999999999 87 78999998 79999999999999999998877 79999999 432 2666666
Q ss_pred CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEe
Q 000654 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1371)
Q Consensus 95 gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~ 174 (1371)
.|+.|+.||++. -+.++.+.||-..|.|++..| .-+.|++|+.|.++++||+.+...+..+.
T Consensus 213 edk~VKCwDLe~---------------nkvIR~YhGHlS~V~~L~lhP---Tldvl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 213 EDKQVKCWDLEY---------------NKVIRHYHGHLSGVYCLDLHP---TLDVLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred CCCeeEEEechh---------------hhhHHHhccccceeEEEeccc---cceeEEecCCcceEEEeeecccceEEEec
Confidence 699999999986 356778889999999999999 88999999999999999999999999988
Q ss_pred cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEec
Q 000654 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1371)
Q Consensus 175 ~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g 254 (1371)
+|... +.++.+ .+-...+++|+.|++|++||+. .++....+..
T Consensus 275 GH~~~-V~~V~~---~~~dpqvit~S~D~tvrlWDl~---------------------------------agkt~~tlt~ 317 (460)
T KOG0285|consen 275 GHTNP-VASVMC---QPTDPQVITGSHDSTVRLWDLR---------------------------------AGKTMITLTH 317 (460)
T ss_pred CCCCc-ceeEEe---ecCCCceEEecCCceEEEeeec---------------------------------cCceeEeeec
Confidence 77654 445554 3445689999999999999999 6677788899
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-CCEEEEEeCCCeEEEE
Q 000654 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1371)
Q Consensus 255 H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-~~~L~Sgs~Dg~I~VW 333 (1371)
|...|.+++.+|....+||++.| .|+-|++..+.. ++ .+.+|.+-|.+++.. +.++++|+++|.+..|
T Consensus 318 hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f-----~~-----nlsgh~~iintl~~nsD~v~~~G~dng~~~fw 386 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF-----LQ-----NLSGHNAIINTLSVNSDGVLVSGGDNGSIMFW 386 (460)
T ss_pred ccceeeEEecCCchhhhhccCCc-cceeccCCccch-----hh-----ccccccceeeeeeeccCceEEEcCCceEEEEE
Confidence 99999999999999999999998 699999988765 33 688999999999987 8999999999999999
Q ss_pred eC-CCcEEEEEe-------eccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 334 GS-DGKQLKMIK-------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 334 d~-~g~~l~~l~-------~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
|. +|-..+.+. .....+|.+.+|...+..|+||..|.+|++|.-+
T Consensus 387 dwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 387 DWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 99 554333221 1122369999999999999999999999999863
No 39
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1e-25 Score=250.83 Aligned_cols=291 Identities=19% Similarity=0.319 Sum_probs=248.7
Q ss_pred CCCccEEEEeCCC------Cc---------------ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEE
Q 000654 1 MGKKDLSEWRLDV------GQ---------------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIR 58 (1371)
Q Consensus 1 s~D~tV~iWdl~~------~~---------------h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~ 58 (1371)
+.|-+.|+|++.. .+ -..+||+|+++ .+ |.+||+|+ +|.++||+. +|.++.
T Consensus 198 ~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn--~~----G~~LatG~~~G~~riw~~-~G~l~~ 270 (524)
T KOG0273|consen 198 SGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN--ND----GTLLATGSEDGEARIWNK-DGNLIS 270 (524)
T ss_pred CCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec--CC----CCeEEEeecCcEEEEEec-Cchhhh
Confidence 3567899999885 11 12569999999 76 89999999 899999995 677888
Q ss_pred EEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEE
Q 000654 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1371)
Q Consensus 59 ~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~ 137 (1371)
++..|++ +|+.+.|+ .+| .+|++.+ |+++.+||..+ ++..+.+.-|..+-.+
T Consensus 271 tl~~Hkg-PI~slKWn-------k~G----~yilS~~vD~ttilwd~~~---------------g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 271 TLGQHKG-PIFSLKWN-------KKG----TYILSGGVDGTTILWDAHT---------------GTVKQQFEFHSAPALD 323 (524)
T ss_pred hhhccCC-ceEEEEEc-------CCC----CEEEeccCCccEEEEeccC---------------ceEEEeeeeccCCccc
Confidence 8888887 99999999 777 4566655 99999999876 4455666778788788
Q ss_pred EEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccc
Q 000654 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1371)
Q Consensus 138 v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~ 217 (1371)
|.|- +...+++.+.|+.|+|+.+....++.++.+|++ .+..+.| .|.+.+|++++.|++++||...
T Consensus 324 VdW~----~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g-~V~alk~---n~tg~LLaS~SdD~TlkiWs~~------ 389 (524)
T KOG0273|consen 324 VDWQ----SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG-EVNALKW---NPTGSLLASCSDDGTLKIWSMG------ 389 (524)
T ss_pred eEEe----cCceEeecCCCceEEEEEecCCCcceeeecccC-ceEEEEE---CCCCceEEEecCCCeeEeeecC------
Confidence 9997 446689999999999999999999999988655 4667777 7889999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC---------CEEEEEeCCCcEEEEEccCC
Q 000654 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG---------SKLVSVSDDRSARIWEVRAE 288 (1371)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg---------~~LaS~s~Dg~VriWdl~~~ 288 (1371)
.....+.+.+|+..|..+.|+|.+ ..+++++.|++|++||+..+
T Consensus 390 ---------------------------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g 442 (524)
T KOG0273|consen 390 ---------------------------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG 442 (524)
T ss_pred ---------------------------CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC
Confidence 455677889999999999999965 47999999999999999987
Q ss_pred cccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEE
Q 000654 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1371)
Q Consensus 289 ~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~T 365 (1371)
.+ + .++..|..+|++++|+ +.++|+|+.||.|.+|+. .++.++.+.+..+ |..++|+.+|..|..
T Consensus 443 v~-----i-----~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~--Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 443 VP-----I-----HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG--IFELCWNAAGDKLGA 510 (524)
T ss_pred ce-----e-----EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe--EEEEEEcCCCCEEEE
Confidence 66 2 3788999999999999 689999999999999999 8888888877664 999999999999999
Q ss_pred EECCCcEEEEEcC
Q 000654 366 AGFDSAIKVHQFQ 378 (1371)
Q Consensus 366 gg~Dg~I~lwdl~ 378 (1371)
+-.|+.+++-|+.
T Consensus 511 ~~sd~~vcvldlr 523 (524)
T KOG0273|consen 511 CASDGSVCVLDLR 523 (524)
T ss_pred EecCCCceEEEec
Confidence 9999999998873
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=3.7e-25 Score=239.83 Aligned_cols=340 Identities=17% Similarity=0.235 Sum_probs=262.4
Q ss_pred eeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCC
Q 000654 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1371)
Q Consensus 124 ~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg 203 (1371)
-+.++..|++.|.+++.+| +.++++||+.|....+|++.++.....+.+|... +.++.| +-++.+||+|+.+|
T Consensus 56 S~~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDS-Vt~~~F---shdgtlLATGdmsG 128 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDS-VTCCSF---SHDGTLLATGDMSG 128 (399)
T ss_pred ceeehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCc-eEEEEE---ccCceEEEecCCCc
Confidence 4567889999999999999 9999999999999999999999988888877664 445555 78999999999999
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 000654 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1371)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriW 283 (1371)
.|+||+.. ++.....+.+--..|.=+.|+|.+..|+.|+.||.+.+|
T Consensus 129 ~v~v~~~s---------------------------------tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw 175 (399)
T KOG0296|consen 129 KVLVFKVS---------------------------------TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMW 175 (399)
T ss_pred cEEEEEcc---------------------------------cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEE
Confidence 99999998 444444454455677889999999999999999999999
Q ss_pred EccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCC
Q 000654 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1371)
Q Consensus 284 dl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg 360 (1371)
.+..+.. . ..+.||..++++-.|. ++.++++..||+|++|+. ++.++..+....+....++.++..+
T Consensus 176 ~ip~~~~-----~-----kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 176 QIPSQAL-----C-----KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG 245 (399)
T ss_pred ECCCcce-----e-----eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc
Confidence 9988533 2 3889999999999997 689999999999999999 9999999886656568899999999
Q ss_pred CEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCC
Q 000654 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1371)
Q Consensus 361 ~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G 440 (1371)
..+++|..++.+++-.... |+.+.+. ++
T Consensus 246 ~~~~~g~~e~~~~~~~~~s---------------------------------------------------gKVv~~~-n~ 273 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGS---------------------------------------------------GKVVNCN-NG 273 (399)
T ss_pred ceeEeccCCccEEEEcccc---------------------------------------------------ceEEEec-CC
Confidence 9999999998887755410 1111111 11
Q ss_pred cEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCc
Q 000654 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGI 520 (1371)
Q Consensus 441 ~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~ 520 (1371)
... .+.......+.+++..+. +..-.+.|+|+-||+|.|||+.....+. ...+
T Consensus 274 ~~~--------------~l~~~~e~~~esve~~~~-----ss~lpL~A~G~vdG~i~iyD~a~~~~R~--------~c~h 326 (399)
T KOG0296|consen 274 TVP--------------ELKPSQEELDESVESIPS-----SSKLPLAACGSVDGTIAIYDLAASTLRH--------ICEH 326 (399)
T ss_pred CCc--------------cccccchhhhhhhhhccc-----ccccchhhcccccceEEEEecccchhhe--------eccC
Confidence 000 001111222333433332 2455789999999999999998654332 1223
Q ss_pred ccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecC
Q 000654 521 ERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL 600 (1371)
Q Consensus 521 ~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~ 600 (1371)
+..++.+.| -+ ..+|++++.+|.|++||.+.+. +...+ .+|...|.+++++|+.+++++++.
T Consensus 327 e~~V~~l~w--~~-t~~l~t~c~~g~v~~wDaRtG~--------------l~~~y-~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 327 EDGVTKLKW--LN-TDYLLTACANGKVRQWDARTGQ--------------LKFTY-TGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred CCceEEEEE--cC-cchheeeccCceEEeeeccccc--------------eEEEE-ecCchheeEEEEcCCCcEEEEecC
Confidence 333444333 33 6799999999999999998763 22333 489999999999999999999999
Q ss_pred CCeEEEEEcC
Q 000654 601 RGNLVLFPLL 610 (1371)
Q Consensus 601 dGtI~Iwd~~ 610 (1371)
|++.+||+++
T Consensus 389 D~~a~VF~v~ 398 (399)
T KOG0296|consen 389 DNTALVFEVP 398 (399)
T ss_pred CCeEEEEecC
Confidence 9999999875
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-24 Score=256.41 Aligned_cols=317 Identities=16% Similarity=0.240 Sum_probs=252.9
Q ss_pred CccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeec
Q 000654 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1371)
Q Consensus 65 ~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~ 144 (1371)
..+|.+++|+ |.- +..|++--.|.|++||.+- ..++..+..|.++|+.++|+|
T Consensus 9 SsRvKglsFH-------P~r---PwILtslHsG~IQlWDYRM---------------~tli~rFdeHdGpVRgv~FH~-- 61 (1202)
T KOG0292|consen 9 SSRVKGLSFH-------PKR---PWILTSLHSGVIQLWDYRM---------------GTLIDRFDEHDGPVRGVDFHP-- 61 (1202)
T ss_pred cccccceecC-------CCC---CEEEEeecCceeeeehhhh---------------hhHHhhhhccCCccceeeecC--
Confidence 4589999999 653 2555556699999999985 567888999999999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCC
Q 000654 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1371)
Q Consensus 145 ~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~ 224 (1371)
.+.++++|+.|..|++|+..+.+++.++.+|-.. +..+.| ...-.++++++.|.+|+||++.
T Consensus 62 -~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY-VRt~~F---HheyPWIlSASDDQTIrIWNwq------------- 123 (1202)
T KOG0292|consen 62 -TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY-VRTVFF---HHEYPWILSASDDQTIRIWNWQ------------- 123 (1202)
T ss_pred -CCCeEEecCCccEEEEEecccceehhhhccccce-eEEeec---cCCCceEEEccCCCeEEEEecc-------------
Confidence 9999999999999999999999999999887653 445556 4556799999999999999999
Q ss_pred CCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccC---C--------
Q 000654 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD---S-------- 293 (1371)
Q Consensus 225 ~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~---~-------- 293 (1371)
+...+..+.||...|+|..|+|....++|+|-|.+||+||+..-+... .
T Consensus 124 --------------------sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~ 183 (1202)
T KOG0292|consen 124 --------------------SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG 183 (1202)
T ss_pred --------------------CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence 788999999999999999999999999999999999999997643220 0
Q ss_pred ---------CCceeeeceEeecCCccEEEEEEcC--CEEEEEeCCCeEEEEeCC-C--cEEEEEeeccCcCEEEEEEcCC
Q 000654 294 ---------DSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSD-G--KQLKMIKEHIGRGIWRCLYDSL 359 (1371)
Q Consensus 294 ---------~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~I~VWd~~-g--~~l~~l~~h~~~~V~sl~~spd 359 (1371)
..--.++ ..+.||...|.-++|+| ..|+||+.|..|++|..+ . -.+.+.++|.+ +|.++-|+|.
T Consensus 184 ~~~~~dLfg~~DaVVK-~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~ 261 (1202)
T KOG0292|consen 184 QQGNSDLFGQTDAVVK-HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPH 261 (1202)
T ss_pred cccchhhcCCcCeeee-eeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEecCc
Confidence 0011123 57889999999999997 899999999999999993 2 25678899999 7999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCC-CcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEc
Q 000654 360 SSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (1371)
Q Consensus 360 g~~L~Tgg~Dg~I~lwdl~~~-~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~ 438 (1371)
..++++.|.|++|++||++.+ .++++. ...+....++-.|..++++++.
T Consensus 262 q~lIlSnsEDksirVwDm~kRt~v~tfr------------------------------rendRFW~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRTSVQTFR------------------------------RENDRFWILAAHPELNLFAAGH 311 (1202)
T ss_pred cceeEecCCCccEEEEecccccceeeee------------------------------ccCCeEEEEEecCCcceeeeec
Confidence 999999999999999999542 233222 2224567888899999999998
Q ss_pred CCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCc
Q 000654 439 HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1371)
Q Consensus 439 ~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~ 505 (1371)
++.+..+++ ....+..++ .+ +.|+... |..|+-+|+.+.+
T Consensus 312 DsGm~VFkl--------------eRErpa~~v-----------~~-n~LfYvk-d~~i~~~d~~t~~ 351 (1202)
T KOG0292|consen 312 DSGMIVFKL--------------ERERPAYAV-----------NG-NGLFYVK-DRFIRSYDLRTQK 351 (1202)
T ss_pred CCceEEEEE--------------cccCceEEE-----------cC-CEEEEEc-cceEEeeeccccc
Confidence 887765443 223444444 22 3333333 7889999998744
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=2.6e-27 Score=259.23 Aligned_cols=277 Identities=18% Similarity=0.275 Sum_probs=228.7
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
-..+|..|.+. |+ |+-|++|+ .|...+|+..+..--.-++.|+. +|.++.|+ ++| ..++++
T Consensus 95 vkc~V~~v~Wt--Pe----GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs-~Vr~m~ws-------~~g----~wmiSg 156 (464)
T KOG0284|consen 95 VKCPVNVVRWT--PE----GRRLLTGSQSGEFTLWNGTSFNFETILQAHDS-PVRTMKWS-------HNG----TWMISG 156 (464)
T ss_pred cccceeeEEEc--CC----CceeEeecccccEEEecCceeeHHHHhhhhcc-cceeEEEc-------cCC----CEEEEc
Confidence 34579999999 98 78888888 49999999744221122234544 89999999 887 344444
Q ss_pred -CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCC-CcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEE
Q 000654 95 -GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1371)
Q Consensus 95 -gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~-~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~ 172 (1371)
.+|.|++|+... ..++...+|. ..|++++|+| +...+++++.||+|+|||....+.-..
T Consensus 157 D~gG~iKyWqpnm----------------nnVk~~~ahh~eaIRdlafSp---nDskF~t~SdDg~ikiWdf~~~kee~v 217 (464)
T KOG0284|consen 157 DKGGMIKYWQPNM----------------NNVKIIQAHHAEAIRDLAFSP---NDSKFLTCSDDGTIKIWDFRMPKEERV 217 (464)
T ss_pred CCCceEEecccch----------------hhhHHhhHhhhhhhheeccCC---CCceeEEecCCCeEEEEeccCCchhhe
Confidence 489999999874 2233444554 8999999999 888899999999999999988877666
Q ss_pred EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEE
Q 000654 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1371)
Q Consensus 173 l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1371)
+.+|. -.+.++.+ .|...+||+|+.|+.|++||.+ ++.++..+
T Consensus 218 L~GHg-wdVksvdW---HP~kgLiasgskDnlVKlWDpr---------------------------------Sg~cl~tl 260 (464)
T KOG0284|consen 218 LRGHG-WDVKSVDW---HPTKGLIASGSKDNLVKLWDPR---------------------------------SGSCLATL 260 (464)
T ss_pred eccCC-CCcceecc---CCccceeEEccCCceeEeecCC---------------------------------Ccchhhhh
Confidence 75543 44667776 5677899999999999999999 78889999
Q ss_pred ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCe
Q 000654 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCT 329 (1371)
Q Consensus 253 ~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~ 329 (1371)
.+|...|..+.|+|++++|+|+|.|..++++|++..+. + +.+.+|...++++.|+ +++|.+|+.||.
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE-----l-----~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE-----L-----FTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH-----H-----HHhhcchhhheeeccccccccceeeccCCCc
Confidence 99999999999999999999999999999999996544 2 3889999999999998 589999999999
Q ss_pred EEEEeCC-CcEEEEE-eeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 330 CRVWGSD-GKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 330 I~VWd~~-g~~l~~l-~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
|..|.+. .+++..+ ..|.+ .||+++|+|=|.+|+||+.|.++++|.-
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~-~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDG-EIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eEEEeccccccccCCCccccc-ceeeeeccccceeEeecCCCcceeeecc
Confidence 9999994 5555554 45777 6999999999999999999999999986
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=2.6e-25 Score=241.04 Aligned_cols=302 Identities=16% Similarity=0.150 Sum_probs=244.5
Q ss_pred CCCccEEEEeCCCCc-------ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEE
Q 000654 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1371)
Q Consensus 1 s~D~tV~iWdl~~~~-------h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~ 72 (1371)
+.|....+|++.++. |...|+++.|+ .+ +.|||+|. +|.|+||...++....++.. +...|.=+.
T Consensus 83 GgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hd----gtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~ 155 (399)
T KOG0296|consen 83 GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HD----GTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLK 155 (399)
T ss_pred CCCceEEEEEccCCcceeEecCCCCceEEEEEc--cC----ceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEE
Confidence 457778999999997 88899999999 77 89999998 89999999999988777752 233577777
Q ss_pred eeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEE
Q 000654 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1371)
Q Consensus 73 ~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Lat 152 (1371)
|+ |.+. .++|.+.||++-+|.+.. ....+.+.||+.++++-+|.| +|+.+++
T Consensus 156 WH-------p~a~---illAG~~DGsvWmw~ip~---------------~~~~kv~~Gh~~~ct~G~f~p---dGKr~~t 207 (399)
T KOG0296|consen 156 WH-------PRAH---ILLAGSTDGSVWMWQIPS---------------QALCKVMSGHNSPCTCGEFIP---DGKRILT 207 (399)
T ss_pred ec-------cccc---EEEeecCCCcEEEEECCC---------------cceeeEecCCCCCcccccccC---CCceEEE
Confidence 88 7762 444445599999999975 245677889999999999999 9999999
Q ss_pred EECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000654 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1371)
Q Consensus 153 gs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1371)
+..|++|++|+..+++++.++...+......+.+ +..+..+++|..++.+++-+..+++......
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~---~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n------------ 272 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL---NLAGSTLTKGNSEGVACGVNNGSGKVVNCNN------------ 272 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCcccc---ccccceeEeccCCccEEEEccccceEEEecC------------
Confidence 9999999999999999998887555444444444 6678889999999999988776332211100
Q ss_pred CcceeeecccccceeeEEEEecccCCEEEEEEcC---CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCc
Q 000654 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1371)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~sp---dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~ 309 (1371)
+.......+++..+.+|.+.| .-.+.|+|+-||+|.|||+...+. +....|..
T Consensus 273 -------------~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-----------R~~c~he~ 328 (399)
T KOG0296|consen 273 -------------GTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-----------RHICEHED 328 (399)
T ss_pred -------------CCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-----------heeccCCC
Confidence 001111224555555555554 556789999999999999988765 47788999
Q ss_pred cEEEEEEcC-CEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 310 RVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 310 ~I~~l~~s~-~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
.|..+.|.+ .+|++++.+|.|+.||. +|+++.++.+|.. +|..++++|+.++++|++.|++.++|+.
T Consensus 329 ~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 329 GVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 999999986 89999999999999999 9999999999999 7999999999999999999999999986
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=2.2e-25 Score=236.12 Aligned_cols=281 Identities=20% Similarity=0.318 Sum_probs=230.2
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC-CeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~s-g~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~ 93 (1371)
|.+.|+.+.|+ |+ +.++|+|. |..|.+|+... -+-...+++|.+ .|.++.|. +|++ .++.+
T Consensus 46 h~geI~~~~F~--P~----gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg-AVM~l~~~-------~d~s---~i~S~ 108 (338)
T KOG0265|consen 46 HKGEIYTIKFH--PD----GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG-AVMELHGM-------RDGS---HILSC 108 (338)
T ss_pred CcceEEEEEEC--CC----CCeEeecCCcceEEEEeccccccceeeeccccc-eeEeeeec-------cCCC---EEEEe
Confidence 88999999999 99 88999977 89999999643 344567778877 89999999 8883 44444
Q ss_pred ECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEE
Q 000654 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1371)
Q Consensus 94 ~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l 173 (1371)
+.|++|+.||.++ ++.....++|.+-|+.++.+. ....++.+++.|+++++||+++...++++
T Consensus 109 gtDk~v~~wD~~t---------------G~~~rk~k~h~~~vNs~~p~r--rg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 109 GTDKTVRGWDAET---------------GKRIRKHKGHTSFVNSLDPSR--RGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred cCCceEEEEeccc---------------ceeeehhccccceeeecCccc--cCCeEEEecCCCceEEEEeecccchhhcc
Confidence 5599999999987 567788899999999998543 23356788899999999999987777666
Q ss_pred ecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe
Q 000654 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1371)
Q Consensus 174 ~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1371)
... ..+.++.| ..++..+.+|+.|+.|++||++ .....+.+.
T Consensus 172 ~~k--yqltAv~f---~d~s~qv~sggIdn~ikvWd~r---------------------------------~~d~~~~ls 213 (338)
T KOG0265|consen 172 ENK--YQLTAVGF---KDTSDQVISGGIDNDIKVWDLR---------------------------------KNDGLYTLS 213 (338)
T ss_pred ccc--eeEEEEEe---cccccceeeccccCceeeeccc---------------------------------cCcceEEee
Confidence 432 33556665 6778899999999999999998 566788999
Q ss_pred cccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCc--c--EEEEEEc--CCEEEEEeCC
Q 000654 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--R--VWDCCLT--DSFIITAGED 327 (1371)
Q Consensus 254 gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~--~--I~~l~~s--~~~L~Sgs~D 327 (1371)
||.+.|+.+..+|+|.++.+-+-|.++++||++..... .+.++ .+.+|.- . ...++|+ +..+-.|+.|
T Consensus 214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~----~R~v~--if~g~~hnfeknlL~cswsp~~~~i~ags~d 287 (338)
T KOG0265|consen 214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS----QRCVK--IFQGHIHNFEKNLLKCSWSPNGTKITAGSAD 287 (338)
T ss_pred cccCceeeEEeccCCCccccccccceEEEEEecccCCC----CceEE--EeecchhhhhhhcceeeccCCCCcccccccc
Confidence 99999999999999999999999999999999875441 22233 5555532 2 3556676 4688888999
Q ss_pred CeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q 000654 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (1371)
Q Consensus 328 g~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lw 375 (1371)
..+.+||. ....+..+.+|.+ .|.+++|+|...+|.+++.|.+|.+=
T Consensus 288 r~vyvwd~~~r~~lyklpGh~g-svn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 288 RFVYVWDTTSRRILYKLPGHYG-SVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ceEEEeecccccEEEEcCCcce-eEEEeeecCCCcEEEEeccCceeEee
Confidence 99999999 5588899999999 69999999999999999999998763
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=4.7e-27 Score=251.06 Aligned_cols=267 Identities=19% Similarity=0.310 Sum_probs=225.5
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g 95 (1371)
...|+|+.+. ...+++|. |++|+|||..+-.++..+.+|.+ .|.|+.+. ++++++++
T Consensus 197 skgVYClQYD--------D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG-SVLCLqyd-------------~rviisGS 254 (499)
T KOG0281|consen 197 SKGVYCLQYD--------DEKIVSGLRDNTIKIWDKNSLECLKILTGHTG-SVLCLQYD-------------ERVIVSGS 254 (499)
T ss_pred CCceEEEEec--------chhhhcccccCceEEeccccHHHHHhhhcCCC-cEEeeecc-------------ceEEEecC
Confidence 4568999987 35778888 89999999999999999999888 79999987 14555544
Q ss_pred -CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEE--EE
Q 000654 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LE 172 (1371)
Q Consensus 96 -d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~--~~ 172 (1371)
|.+|+|||+++ .+++.++-+|.+.|..+.|+. .++++++.|.++.+||+.....+ ..
T Consensus 255 SDsTvrvWDv~t---------------ge~l~tlihHceaVLhlrf~n-----g~mvtcSkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 255 SDSTVRVWDVNT---------------GEPLNTLIHHCEAVLHLRFSN-----GYMVTCSKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred CCceEEEEeccC---------------CchhhHHhhhcceeEEEEEeC-----CEEEEecCCceeEEEeccCchHHHHHH
Confidence 89999999997 567888889999999999975 78999999999999999776532 11
Q ss_pred EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEE
Q 000654 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1371)
Q Consensus 173 l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1371)
+-..+...+..+.| +..++++++.|.+|++|+.. +...+..+
T Consensus 315 VLvGHrAaVNvVdf-----d~kyIVsASgDRTikvW~~s---------------------------------t~efvRtl 356 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDF-----DDKYIVSASGDRTIKVWSTS---------------------------------TCEFVRTL 356 (499)
T ss_pred HHhhhhhheeeecc-----ccceEEEecCCceEEEEecc---------------------------------ceeeehhh
Confidence 12334455666655 56699999999999999998 78889999
Q ss_pred ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEE
Q 000654 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV 332 (1371)
Q Consensus 253 ~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~V 332 (1371)
.||...|-|+.+ .++++++||.|.+||+||+..+.+ ++ .+.||+.-|.++.|..+.+++|+.||+|+|
T Consensus 357 ~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~c-----LR-----vLeGHEeLvRciRFd~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 357 NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC-----LR-----VLEGHEELVRCIRFDNKRIVSGAYDGKIKV 424 (499)
T ss_pred hcccccceehhc--cCeEEEecCCCceEEEEeccccHH-----HH-----HHhchHHhhhheeecCceeeeccccceEEE
Confidence 999999999887 678999999999999999999887 44 889999999999999999999999999999
Q ss_pred EeC-CCc---------EEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 333 WGS-DGK---------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 333 Wd~-~g~---------~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
||+ .+. ++.++..|.++ |..+.| |...+++++.|.+|.+||+.
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgR-VFrLQF--D~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGR-VFRLQF--DEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred EecccccCCcccccchHHHhhhhccce-eEEEee--cceEEEeccCCCeEEEEEcC
Confidence 998 321 45567789985 999999 56789999999999999983
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=2.1e-24 Score=245.51 Aligned_cols=277 Identities=22% Similarity=0.426 Sum_probs=232.5
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|.++|++++|+ |+ +++++++. ++.|++||+.+++.+..+..+.. .+..+.|+ |++ ..++++
T Consensus 8 h~~~i~~~~~~--~~----~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~-------~~~----~~l~~~ 69 (289)
T cd00200 8 HTGGVTCVAFS--PD----GKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAAS-------ADG----TYLASG 69 (289)
T ss_pred cCCCEEEEEEc--CC----CCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-ceeEEEEC-------CCC----CEEEEE
Confidence 77899999999 98 78888887 79999999999887777777655 78899999 876 355555
Q ss_pred C-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEE
Q 000654 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1371)
Q Consensus 95 g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l 173 (1371)
+ ++.|++|++... +.+..+..|...|.++.|+| ++.++++++.|+.|.+||+.+++....+
T Consensus 70 ~~~~~i~i~~~~~~---------------~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 70 SSDKTIRLWDLETG---------------ECVRTLTGHTSYVSSVAFSP---DGRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred cCCCeEEEEEcCcc---------------cceEEEeccCCcEEEEEEcC---CCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 4 999999999752 34455668888999999999 8888888888999999999988887777
Q ss_pred ecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe
Q 000654 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1371)
Q Consensus 174 ~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1371)
..+. ..+.++.+ ++++.++++++.++.|++||++ ..+.+..+.
T Consensus 132 ~~~~-~~i~~~~~---~~~~~~l~~~~~~~~i~i~d~~---------------------------------~~~~~~~~~ 174 (289)
T cd00200 132 RGHT-DWVNSVAF---SPDGTFVASSSQDGTIKLWDLR---------------------------------TGKCVATLT 174 (289)
T ss_pred ccCC-CcEEEEEE---cCcCCEEEEEcCCCcEEEEEcc---------------------------------ccccceeEe
Confidence 6443 34666766 5668888888889999999998 455666777
Q ss_pred cccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEEEEEeCCCeEE
Q 000654 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCR 331 (1371)
Q Consensus 254 gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~I~ 331 (1371)
.|...|.++.|+|+++.+++++.|+.|++||+..... . ..+..|...+.+++|++ .++++++.|+.++
T Consensus 175 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 244 (289)
T cd00200 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-----L-----GTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244 (289)
T ss_pred cCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----e-----cchhhcCCceEEEEEcCCCcEEEEEcCCCcEE
Confidence 8999999999999999999999999999999987544 1 14457888999999984 6777777799999
Q ss_pred EEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000654 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1371)
Q Consensus 332 VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwd 376 (1371)
+|++ .++.+..+..|.. .|.+++|+|++.+|++++.||.+++|+
T Consensus 245 i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 245 VWDLRTGECVQTLSGHTN-SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCceeEEEccccCC-cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999 6888888888887 699999999999999999999999996
No 47
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.4e-23 Score=240.18 Aligned_cols=478 Identities=13% Similarity=0.135 Sum_probs=324.6
Q ss_pred CCccEEEEeCCCCcc---------cCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEE
Q 000654 2 GKKDLSEWRLDVGQY---------LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1371)
Q Consensus 2 ~D~tV~iWdl~~~~h---------~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~ 72 (1371)
.||.|.||++...-| .+.|.+++|. +. ++++-+|.+|.|.-||+.+++.+..+....+ .|++++
T Consensus 45 t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~----~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-~IWsia 117 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EG----GRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-AIWSIA 117 (691)
T ss_pred cCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cC----CeEEeecCCceEEEEecccCceeEEecCCCc-ceeEEE
Confidence 478999999998653 3458999999 77 8899999999999999999999888886544 899999
Q ss_pred eeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEE
Q 000654 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1371)
Q Consensus 73 ~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Lat 152 (1371)
.+ |.+. .+.+.|.||.+..++...+. .+....+..-++.|.++.|+| ++..|++
T Consensus 118 i~-------p~~~---~l~IgcddGvl~~~s~~p~~-------------I~~~r~l~rq~sRvLslsw~~---~~~~i~~ 171 (691)
T KOG2048|consen 118 IN-------PENT---ILAIGCDDGVLYDFSIGPDK-------------ITYKRSLMRQKSRVLSLSWNP---TGTKIAG 171 (691)
T ss_pred eC-------Cccc---eEEeecCCceEEEEecCCce-------------EEEEeecccccceEEEEEecC---CccEEEe
Confidence 99 7762 44455578877777666533 455556666679999999999 9999999
Q ss_pred EECCCcEEEEECCCCeEEEE-------EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCC
Q 000654 153 GCSDNSIRVWDISNSSIILE-------VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1371)
Q Consensus 153 gs~Dg~I~vWd~~~~~~~~~-------l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~ 225 (1371)
|+.||.|++||+..+..+.. +...+.+++|++.+.. ...|++|...|.|.+||..
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr----d~tI~sgDS~G~V~FWd~~-------------- 233 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR----DSTIASGDSAGTVTFWDSI-------------- 233 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee----cCcEEEecCCceEEEEccc--------------
Confidence 99999999999999887652 2234678899998853 4589999999999999998
Q ss_pred CCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEee
Q 000654 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1371)
Q Consensus 226 s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~ 305 (1371)
.+..++.+..|.+.|.+++..+++.++++++.|+.|..+....... +.+......
T Consensus 234 -------------------~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~------~wv~~~~r~ 288 (691)
T KOG2048|consen 234 -------------------FGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS------EWVINSRRD 288 (691)
T ss_pred -------------------CcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc------ceeeecccc
Confidence 5667777888999999999999999999999999999998877643 122112556
Q ss_pred cCCccEEEEEEcCCEEEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEEC--------CCcEEEEEc
Q 000654 306 GHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF--------DSAIKVHQF 377 (1371)
Q Consensus 306 gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~--------Dg~I~lwdl 377 (1371)
.|...|.+++..+..+++|+.|.++.+-.... ..+..|.. -...|.+..+..+.. +..+.+|.+
T Consensus 289 ~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~---~~~~~h~~-----~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrl 360 (691)
T KOG2048|consen 289 LHAHDVRSMAVIENALISGGRDFTLAICSSRE---FKNMDHRQ-----KNLFPASDRVSVAPENRLLVLWKAHGVDLWRL 360 (691)
T ss_pred CCcccceeeeeecceEEecceeeEEEEccccc---cCchhhhc-----cccccccceeecCccceEEEEeccccccceec
Confidence 78889999999999999999999988866522 11111211 011222233333333 444555555
Q ss_pred CCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEE
Q 000654 378 QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (1371)
Q Consensus 378 ~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~ 457 (1371)
....++ ++. ....++. ......+.|.+.+.+|+|++++.+.-..+..+++......+-..
T Consensus 361 GS~~~~---g~~------~~~~Llk-----------l~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~ 420 (691)
T KOG2048|consen 361 GSVILQ---GEY------NYIHLLK-----------LFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVIN 420 (691)
T ss_pred cCcccc---ccc------Chhhhee-----------eecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEE
Confidence 221111 000 0111111 11233457999999999999998766666666665544322111
Q ss_pred eEeecC-CccEEEEeecCCCCCCCCCCCCEEEEEe-CCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCC
Q 000654 458 ILQVSE-GMPIICMDLLSNEPKYPCGIDDWVALGD-GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGH 535 (1371)
Q Consensus 458 i~~~~~-~~~I~~ld~~~~~~~~s~~~~~lla~gs-~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~ 535 (1371)
+-.... ..+...+ .++ -+++.++..+ ....+.++++.+............ .+...+ ..+..+++|
T Consensus 421 v~~~~~~~~~a~~i-------~ft-id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~---~~~~~I--~~l~~SsdG 487 (691)
T KOG2048|consen 421 VDDVPLALLDASAI-------SFT-IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ---AKCPSI--SRLVVSSDG 487 (691)
T ss_pred eccchhhhccceee-------EEE-ecCceEEEEecccceeEEEEecCcchhhhhccccc---cCCCcc--eeEEEcCCC
Confidence 111110 0011111 111 2334444444 677888888776543321111111 111222 234678999
Q ss_pred cEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEee-cCCCEEEEecCCCeEEEEEcCc
Q 000654 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS-FEDEVLFCGDLRGNLVLFPLLR 611 (1371)
Q Consensus 536 ~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~s-pdg~lLatGs~dGtI~Iwd~~~ 611 (1371)
+|+++.+.++.|.+|+++.... . .+.......+|+++++ ++..-|+.++.++.++-||++.
T Consensus 488 ~yiaa~~t~g~I~v~nl~~~~~------------~---~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 488 NYIAAISTRGQIFVYNLETLES------------H---LLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred CEEEEEeccceEEEEEccccee------------e---cchhccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 9999999999999999986431 1 1122334679999999 4677899999999999999954
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=5.9e-25 Score=268.75 Aligned_cols=280 Identities=20% Similarity=0.345 Sum_probs=237.2
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe--EEEEEEeecCccEEEEEeeccccccCCCCcceeeEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~--~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la 92 (1371)
+...|+++.|+ |+ +++++++. ++.+++|+..+++ .+..+.+|.. .|.+++|+ ||| ..++
T Consensus 158 ~~~sv~~~~fs--~~----g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~-~v~~~~fs-------~d~----~~l~ 219 (456)
T KOG0266|consen 158 ECPSVTCVDFS--PD----GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR-GVSDVAFS-------PDG----SYLL 219 (456)
T ss_pred ccCceEEEEEc--CC----CCeEEEccCCCcEEEeecccccchhhcccccccc-ceeeeEEC-------CCC----cEEE
Confidence 46789999999 98 78888876 8999999998877 6777766665 89999999 998 4555
Q ss_pred EEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEE
Q 000654 93 LFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1371)
Q Consensus 93 ~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~ 171 (1371)
+++ |++|+|||+... ...++++++|...|++++|+| +++++++|+.|++|+|||+.+++++.
T Consensus 220 s~s~D~tiriwd~~~~--------------~~~~~~l~gH~~~v~~~~f~p---~g~~i~Sgs~D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 220 SGSDDKTLRIWDLKDD--------------GRNLKTLKGHSTYVTSVAFSP---DGNLLVSGSDDGTVRIWDVRTGECVR 282 (456)
T ss_pred EecCCceEEEeeccCC--------------CeEEEEecCCCCceEEEEecC---CCCEEEEecCCCcEEEEeccCCeEEE
Confidence 554 899999999431 477889999999999999999 88999999999999999999999999
Q ss_pred EEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccccee--eE
Q 000654 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV--NL 249 (1371)
Q Consensus 172 ~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~--~~ 249 (1371)
.+..|... +.++.| ++++.+|++++.|+.|+|||+. ++. ..
T Consensus 283 ~l~~hs~~-is~~~f---~~d~~~l~s~s~d~~i~vwd~~---------------------------------~~~~~~~ 325 (456)
T KOG0266|consen 283 KLKGHSDG-ISGLAF---SPDGNLLVSASYDGTIRVWDLE---------------------------------TGSKLCL 325 (456)
T ss_pred eeeccCCc-eEEEEE---CCCCCEEEEcCCCccEEEEECC---------------------------------CCceeee
Confidence 99888763 555666 8999999999999999999998 333 45
Q ss_pred EEEecccCC--EEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEE---EEc--CCEEE
Q 000654 250 FRLVGHEGS--IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC---CLT--DSFII 322 (1371)
Q Consensus 250 ~~l~gH~~~--I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l---~~s--~~~L~ 322 (1371)
..+.+++.. ++.+.|+|++.++++++.|+.+++||+..... .. ...+|...++++ .+. +.+++
T Consensus 326 ~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 326 KLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS-----VG-----TYTGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred ecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc-----ee-----eecccCCcceeEecccccCCCCeEE
Confidence 566677666 99999999999999999999999999998766 22 667777654332 222 68999
Q ss_pred EEeCCCeEEEEeC-CCcEEEEEeec-cCcCEEEEEEcCCCCEEEEEE--CCCcEEEEEcC
Q 000654 323 TAGEDCTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQ 378 (1371)
Q Consensus 323 Sgs~Dg~I~VWd~-~g~~l~~l~~h-~~~~V~sl~~spdg~~L~Tgg--~Dg~I~lwdl~ 378 (1371)
+|++|+.|.+|+. ++..+..+.+| .. .+..++++|..+++++++ .|+.+++|..+
T Consensus 396 sg~~d~~v~~~~~~s~~~~~~l~~h~~~-~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 396 SGSEDGSVYVWDSSSGGILQRLEGHSKA-AVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEeCCceEEEEeCCccchhhhhcCCCCC-ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999 78888999999 66 699999999999999998 79999999763
No 49
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.7e-22 Score=232.87 Aligned_cols=508 Identities=14% Similarity=0.133 Sum_probs=330.0
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC-eEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg-~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
..+|+||||+ .. .+.||++. +|.|.||++..+ -+...+.++++..|.+++|+ +.+ +++.+.
T Consensus 25 Ps~I~slA~s--~k----S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-------e~~----RLFS~g 87 (691)
T KOG2048|consen 25 PSEIVSLAYS--HK----SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-------EGG----RLFSSG 87 (691)
T ss_pred ccceEEEEEe--cc----CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-------cCC----eEEeec
Confidence 4679999999 43 34466665 899999999875 34566777788899999999 776 788888
Q ss_pred CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEe
Q 000654 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1371)
Q Consensus 95 gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~ 174 (1371)
.+|+|.-||+.+ ++....+....+.||+++.+| .+..++.|+.||.+..++...+.......
T Consensus 88 ~sg~i~EwDl~~---------------lk~~~~~d~~gg~IWsiai~p---~~~~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 88 LSGSITEWDLHT---------------LKQKYNIDSNGGAIWSIAINP---ENTILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred CCceEEEEeccc---------------CceeEEecCCCcceeEEEeCC---ccceEEeecCCceEEEEecCCceEEEEee
Confidence 899999999986 566667777789999999999 88999999999988888888777654432
Q ss_pred -cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe
Q 000654 175 -SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1371)
Q Consensus 175 -~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1371)
.....-+.++.+ .+++..|++|+.||.|++||...+.- +.+.+. .+..+.
T Consensus 150 l~rq~sRvLslsw---~~~~~~i~~Gs~Dg~Iriwd~~~~~t---------------------~~~~~~-----~~d~l~ 200 (691)
T KOG2048|consen 150 LMRQKSRVLSLSW---NPTGTKIAGGSIDGVIRIWDVKSGQT---------------------LHIITM-----QLDRLS 200 (691)
T ss_pred cccccceEEEEEe---cCCccEEEecccCceEEEEEcCCCce---------------------EEEeee-----cccccc
Confidence 344567888887 78899999999999999999982210 000000 011111
Q ss_pred -cccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeE
Q 000654 254 -GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1371)
Q Consensus 254 -gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I 330 (1371)
+-.--|++|.|..+ ..||+|...|+|.+||...+.. ++ ....|.+.|.+++.. ++++++++.|+.|
T Consensus 201 k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTL-----iq-----S~~~h~adVl~Lav~~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 201 KREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTL-----IQ-----SHSCHDADVLALAVADNEDRVFSAGVDPKI 269 (691)
T ss_pred cCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcch-----hh-----hhhhhhcceeEEEEcCCCCeEEEccCCCce
Confidence 12334778888755 4689999999999999998876 33 667899999999998 4899999999999
Q ss_pred EEEeCCCc-----EEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeee
Q 000654 331 RVWGSDGK-----QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1371)
Q Consensus 331 ~VWd~~g~-----~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~ 405 (1371)
..+..++. .......|.. -|.+++..++ .|++||.|..+.+-..... ....|.....++. +
T Consensus 270 i~~~~~~~~~~wv~~~~r~~h~h-dvrs~av~~~--~l~sgG~d~~l~i~~s~~~---~~~~h~~~~~~p~-~------- 335 (691)
T KOG2048|consen 270 IQYSLTTNKSEWVINSRRDLHAH-DVRSMAVIEN--ALISGGRDFTLAICSSREF---KNMDHRQKNLFPA-S------- 335 (691)
T ss_pred EEEEecCCccceeeeccccCCcc-cceeeeeecc--eEEecceeeEEEEcccccc---Cchhhhccccccc-c-------
Confidence 99988332 1222344555 4999999876 8999999999988665321 0111110000000 0
Q ss_pred cCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCC------CceeEEeEeecCCccEEEEeecCCCCCC
Q 000654 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMD------SVNWNKILQVSEGMPIICMDLLSNEPKY 479 (1371)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~------~~~w~~i~~~~~~~~I~~ld~~~~~~~~ 479 (1371)
..+...|..++++.-....+..|++.... ...-.++ ...+...|.+.++
T Consensus 336 -----------------~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl-~~k~~~nIs~~ai------- 390 (691)
T KOG2048|consen 336 -----------------DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKL-FTKEKENISCAAI------- 390 (691)
T ss_pred -----------------ceeecCccceEEEEeccccccceeccCcccccccChhhheee-ecCCccceeeecc-------
Confidence 01112233334443333333333332220 0001111 2233455666666
Q ss_pred CCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEc-CCCcEEEEeCCCCCCc
Q 000654 480 PCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD-PKGRLKLWQLCDPFSS 558 (1371)
Q Consensus 480 s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s-~dg~I~lWdi~~~~~~ 558 (1371)
+|++++++.++-. ..+||.++.......... ...+......+...++.++..++.++ ....+.+.+.+.+...
T Consensus 391 -SPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v----~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k 464 (691)
T KOG2048|consen 391 -SPDGNLIAISTVS-RTKIYRLQPDPNVKVINV----DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK 464 (691)
T ss_pred -CCCCCEEEEeecc-ceEEEEeccCcceeEEEe----ccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh
Confidence 5788999999865 788888865332211110 11111111122334555555555554 5566777776654321
Q ss_pred cccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccccccccccCCc
Q 000654 559 VCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGIS 638 (1371)
Q Consensus 559 ~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~ 638 (1371)
.. .-.. ..+-...|..+..||+|++||+.+.+|.|.+|++.+... ..+.+. + ..
T Consensus 465 el---------~~~~--~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~--------~~l~~r--l-----n~ 518 (691)
T KOG2048|consen 465 EL---------KSIQ--SQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLES--------HLLKVR--L-----NI 518 (691)
T ss_pred hh---------hccc--cccCCCcceeEEEcCCCCEEEEEeccceEEEEEccccee--------ecchhc--c-----Cc
Confidence 11 1000 112356789999999999999999999999999997522 111101 1 13
Q ss_pred CeEEEEEeecCCCceEEEEEcCCCcEEEEEEecC
Q 000654 639 TVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1371)
Q Consensus 639 ~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~~ 672 (1371)
.||.+.|.+ .+...|+..-.|+.+.-++++..
T Consensus 519 ~vTa~~~~~--~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 519 DVTAAAFSP--FVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred ceeeeeccc--cccCcEEEEecCCeEEEEecchh
Confidence 588888884 33445777777889988888543
No 50
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.3e-25 Score=241.16 Aligned_cols=270 Identities=19% Similarity=0.251 Sum_probs=224.6
Q ss_pred EEeecCccEEEEEeeccccccCCCCcceeeEEEEE-CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEE
Q 000654 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1371)
Q Consensus 60 ~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~-gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v 138 (1371)
+.++.. .|+.+-|+ |+- .+++++ .|.+|++||..+ .+++..++||.+.+.++
T Consensus 104 l~g~r~-~vt~v~~h-------p~~----~~v~~as~d~tikv~D~~t---------------g~~e~~LrGHt~sv~di 156 (406)
T KOG0295|consen 104 LAGHRS-SVTRVIFH-------PSE----ALVVSASEDATIKVFDTET---------------GELERSLRGHTDSVFDI 156 (406)
T ss_pred hhcccc-ceeeeeec-------cCc----eEEEEecCCceEEEEEccc---------------hhhhhhhhccccceeEE
Confidence 334443 78889898 763 344444 489999999987 44588999999999999
Q ss_pred EEEeecCCCcEEEEEECCCcEEEEECCC-CeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccc
Q 000654 139 CFLKVCNGNRSLAIGCSDNSIRVWDISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1371)
Q Consensus 139 ~fsp~~~dg~~Latgs~Dg~I~vWd~~~-~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~ 217 (1371)
.|.. .|.+||+++.|-.+.+||..+ .++++.+.+++ ..+.++.++ |.+.++++++.|.+|+.|++.
T Consensus 157 ~~~a---~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~-h~vS~V~f~---P~gd~ilS~srD~tik~We~~------ 223 (406)
T KOG0295|consen 157 SFDA---SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHE-HGVSSVFFL---PLGDHILSCSRDNTIKAWECD------ 223 (406)
T ss_pred EEec---CccEEEecCCccchhheeHHHHHHHHHHhcCcc-cceeeEEEE---ecCCeeeecccccceeEEecc------
Confidence 9998 999999999999999999976 33444444443 356677775 457999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCce
Q 000654 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (1371)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~ 297 (1371)
++-.+.++.+|..+|..++.+.||..+++++.|.++++|-+.++.+.
T Consensus 224 ---------------------------tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k------ 270 (406)
T KOG0295|consen 224 ---------------------------TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK------ 270 (406)
T ss_pred ---------------------------cceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh------
Confidence 78889999999999999999999999999999999999999998652
Q ss_pred eeeceEeecCCccEEEEEEc------------C-----CEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCC
Q 000654 298 EVGSSVLYGHNARVWDCCLT------------D-----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1371)
Q Consensus 298 ~~~~~~~~gh~~~I~~l~~s------------~-----~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spd 359 (1371)
..+..|+-+|-+++|. + +++.+++.|++|++||+ +|.++.++.+|.. .|..++|+|.
T Consensus 271 ----~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~ 345 (406)
T KOG0295|consen 271 ----AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPG 345 (406)
T ss_pred ----hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc-eeeeeEEcCC
Confidence 3778898889888885 2 48999999999999999 9999999999999 7999999999
Q ss_pred CCEEEEEECCCcEEEEEcCC-CCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEE
Q 000654 360 SSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1371)
Q Consensus 360 g~~L~Tgg~Dg~I~lwdl~~-~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t 437 (1371)
|+||+++.+|+++++||++. ++.++++ .|...+.++.|..+..+++++
T Consensus 346 Gkyi~ScaDDktlrvwdl~~~~cmk~~~------------------------------ah~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 346 GKYILSCADDKTLRVWDLKNLQCMKTLE------------------------------AHEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred CeEEEEEecCCcEEEEEeccceeeeccC------------------------------CCcceeEEEecCCCCceEEec
Confidence 99999999999999999953 4444433 344668888888776666554
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=5.8e-24 Score=279.07 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=220.8
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC----e----EEEEEEeecCccEEEEEeeccccccCCCCcc
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----T----LIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg----~----~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~ 86 (1371)
|...|++++|+ |+ +.++|+|+ |+.|+|||..+. . .+..+.. ...|.+++|+ |...
T Consensus 482 ~~~~V~~i~fs--~d----g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~-------~~~~- 545 (793)
T PLN00181 482 SSNLVCAIGFD--RD----GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSKLSGICWN-------SYIK- 545 (793)
T ss_pred CCCcEEEEEEC--CC----CCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCceeeEEec-------cCCC-
Confidence 67889999999 98 78888877 799999997542 1 1222222 2378999998 5321
Q ss_pred eeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECC
Q 000654 87 VTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1371)
Q Consensus 87 ~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~ 165 (1371)
..|++++ |++|+|||+.. .+.+..+.+|.+.|++++|+| .++.+|++|+.|++|++||+.
T Consensus 546 --~~las~~~Dg~v~lWd~~~---------------~~~~~~~~~H~~~V~~l~~~p--~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 546 --SQVASSNFEGVVQVWDVAR---------------SQLVTEMKEHEKRVWSIDYSS--ADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred --CEEEEEeCCCeEEEEECCC---------------CeEEEEecCCCCCEEEEEEcC--CCCCEEEEEcCCCEEEEEECC
Confidence 4555555 99999999975 345677889999999999996 267899999999999999999
Q ss_pred CCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccc
Q 000654 166 NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1371)
Q Consensus 166 ~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~ 245 (1371)
++..+..+..+. .+.++.+. ++++.+|++|+.||.|++||++. .
T Consensus 607 ~~~~~~~~~~~~--~v~~v~~~--~~~g~~latgs~dg~I~iwD~~~--------------------------------~ 650 (793)
T PLN00181 607 QGVSIGTIKTKA--NICCVQFP--SESGRSLAFGSADHKVYYYDLRN--------------------------------P 650 (793)
T ss_pred CCcEEEEEecCC--CeEEEEEe--CCCCCEEEEEeCCCeEEEEECCC--------------------------------C
Confidence 988887776542 35555552 45789999999999999999971 1
Q ss_pred eeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEE
Q 000654 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (1371)
Q Consensus 246 ~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~S 323 (1371)
...+..+.+|...|.++.|. ++.+|++++.|++|++||+...... .....+ ..+.+|...+.+++|+ +.+|++
T Consensus 651 ~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~--~~~~~l--~~~~gh~~~i~~v~~s~~~~~las 725 (793)
T PLN00181 651 KLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG--INETPL--HSFMGHTNVKNFVGLSVSDGYIAT 725 (793)
T ss_pred CccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc--cCCcce--EEEcCCCCCeeEEEEcCCCCEEEE
Confidence 22455677999999999997 7789999999999999999754210 001122 2778999999999998 689999
Q ss_pred EeCCCeEEEEeC-CCcEEEEE-------------eeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 324 AGEDCTCRVWGS-DGKQLKMI-------------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 324 gs~Dg~I~VWd~-~g~~l~~l-------------~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
|+.|+.|++|+. ...++..+ ..|.. .|.+++|+|++.+|++|+.||.|++|++
T Consensus 726 gs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 726 GSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ-FISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc-EEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999997 34333222 12333 5999999999999999999999999986
No 52
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=8.5e-25 Score=258.63 Aligned_cols=247 Identities=18% Similarity=0.317 Sum_probs=204.1
Q ss_pred CCccEEEEeCCCCcccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeecccccc
Q 000654 2 GKKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE 80 (1371)
Q Consensus 2 ~D~tV~iWdl~~~~h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~ 80 (1371)
.|..|++|.+...+ +.++-..++. +. +=.++ |-.+...|..++....++.+|.+ +|.+..|+
T Consensus 398 ~dS~i~~~Sl~p~k-l~~lk~~~~l--~~-------~d~~sad~~~~~~D~~~~~~~~~L~GH~G-PVyg~sFs------ 460 (707)
T KOG0263|consen 398 VDSSVRVWSLTPKK-LKKLKDASDL--SN-------IDTESADVDVDMLDDDSSGTSRTLYGHSG-PVYGCSFS------ 460 (707)
T ss_pred cccEEEEEecchhh-hccccchhhh--cc-------ccccccchhhhhccccCCceeEEeecCCC-ceeeeeec------
Confidence 36678999988543 2333333333 11 11122 33477788777777778888888 99999999
Q ss_pred CCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcE
Q 000654 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1371)
Q Consensus 81 ~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I 159 (1371)
|+. ++|++++ |+++|+|.+.+ +..+-..+||..+|+++.|+| .|-++|||+.|++.
T Consensus 461 -Pd~----rfLlScSED~svRLWsl~t---------------~s~~V~y~GH~~PVwdV~F~P---~GyYFatas~D~tA 517 (707)
T KOG0263|consen 461 -PDR----RFLLSCSEDSSVRLWSLDT---------------WSCLVIYKGHLAPVWDVQFAP---RGYYFATASHDQTA 517 (707)
T ss_pred -ccc----cceeeccCCcceeeeeccc---------------ceeEEEecCCCcceeeEEecC---CceEEEecCCCcee
Confidence 886 4555555 89999999987 567778889999999999999 99999999999999
Q ss_pred EEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee
Q 000654 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1371)
Q Consensus 160 ~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1371)
++|.......++.+.+|-. -+-++.| .|+..++++|+.|.+|++||..
T Consensus 518 rLWs~d~~~PlRifaghls-DV~cv~F---HPNs~Y~aTGSsD~tVRlWDv~---------------------------- 565 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLS-DVDCVSF---HPNSNYVATGSSDRTVRLWDVS---------------------------- 565 (707)
T ss_pred eeeecccCCchhhhccccc-ccceEEE---CCcccccccCCCCceEEEEEcC----------------------------
Confidence 9999998887777766644 3445556 6889999999999999999998
Q ss_pred cccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--
Q 000654 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (1371)
Q Consensus 240 ~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-- 317 (1371)
++..++.|.||.++|.+++|+|+|++|++|+.|+.|++||+..+.. +. .+.+|++.|.++.|+
T Consensus 566 -----~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~-----v~-----~l~~Ht~ti~SlsFS~d 630 (707)
T KOG0263|consen 566 -----TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL-----VK-----QLKGHTGTIYSLSFSRD 630 (707)
T ss_pred -----CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcc-----hh-----hhhcccCceeEEEEecC
Confidence 6778889999999999999999999999999999999999999766 32 788999999999998
Q ss_pred CCEEEEEeCCCeEEEEeC
Q 000654 318 DSFIITAGEDCTCRVWGS 335 (1371)
Q Consensus 318 ~~~L~Sgs~Dg~I~VWd~ 335 (1371)
+..||+|+.|.+|++||+
T Consensus 631 g~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 631 GNVLASGGADNSVRLWDL 648 (707)
T ss_pred CCEEEecCCCCeEEEEEc
Confidence 799999999999999998
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.1e-24 Score=217.44 Aligned_cols=273 Identities=19% Similarity=0.247 Sum_probs=221.8
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEE-eCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG-~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
+.++|.++.|+ -| |+|.+++ .|.+|++||...|.+++++.+|.. .|..++.+ .|+ ..++++
T Consensus 16 ~qgaV~avryN--~d----GnY~ltcGsdrtvrLWNp~rg~liktYsghG~-EVlD~~~s-------~Dn----skf~s~ 77 (307)
T KOG0316|consen 16 AQGAVRAVRYN--VD----GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH-EVLDAALS-------SDN----SKFASC 77 (307)
T ss_pred cccceEEEEEc--cC----CCEEEEcCCCceEEeecccccceeeeecCCCc-eeeecccc-------ccc----cccccC
Confidence 67999999999 77 7776664 589999999999999999998654 79999988 676 567776
Q ss_pred C-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe--EEE
Q 000654 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IIL 171 (1371)
Q Consensus 95 g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~--~~~ 171 (1371)
| |+.+.+||+++ ++.++.+++|.+.|+.++|+. +...+++|+-|.++++||..+.. +++
T Consensus 78 GgDk~v~vwDV~T---------------Gkv~Rr~rgH~aqVNtV~fNe---esSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 78 GGDKAVQVWDVNT---------------GKVDRRFRGHLAQVNTVRFNE---ESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred CCCceEEEEEccc---------------CeeeeecccccceeeEEEecC---cceEEEeccccceeEEEEcccCCCCccc
Confidence 5 89999999997 678889999999999999998 88999999999999999997643 344
Q ss_pred EEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEE
Q 000654 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1371)
Q Consensus 172 ~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~ 251 (1371)
.+... ...+.++.+ .+..+++|+.||+++.||++ .+.....
T Consensus 140 ildea-~D~V~Si~v-----~~heIvaGS~DGtvRtydiR---------------------------------~G~l~sD 180 (307)
T KOG0316|consen 140 ILDEA-KDGVSSIDV-----AEHEIVAGSVDGTVRTYDIR---------------------------------KGTLSSD 180 (307)
T ss_pred hhhhh-cCceeEEEe-----cccEEEeeccCCcEEEEEee---------------------------------cceeehh
Confidence 44332 334556654 46789999999999999999 4444444
Q ss_pred EecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEE--EEEEc--CCEEEEEeCC
Q 000654 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLT--DSFIITAGED 327 (1371)
Q Consensus 252 l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~--~l~~s--~~~L~Sgs~D 327 (1371)
..| .+|+++.|++|++..+.++-|+++|+.|-.+++. ++ ...||...-+ .+++. ..++++|++|
T Consensus 181 y~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl-----L~-----sYkGhkn~eykldc~l~qsdthV~sgSED 248 (307)
T KOG0316|consen 181 YFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL-----LK-----SYKGHKNMEYKLDCCLNQSDTHVFSGSED 248 (307)
T ss_pred hcC--CcceeEEecCCCCEEEEeeccceeeecccchhHH-----HH-----HhcccccceeeeeeeecccceeEEeccCC
Confidence 444 5899999999999999999999999999999876 33 6778876543 34444 6899999999
Q ss_pred CeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000654 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1371)
Q Consensus 328 g~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwd 376 (1371)
|.+.+||+ ++..+..+..+..-.|.+++++|.-..|+++... .+..|.
T Consensus 249 G~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 249 GKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred ceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence 99999999 8889999998887348999999988777776543 445554
No 54
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=3.1e-25 Score=243.03 Aligned_cols=272 Identities=13% Similarity=0.196 Sum_probs=225.9
Q ss_pred ccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecC
Q 000654 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1371)
Q Consensus 66 ~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~ 145 (1371)
..|..+.|. |+|+ +++..+..|.+.+|+... +.....+..|.+.|.++.|++
T Consensus 97 c~V~~v~Wt-------PeGR---RLltgs~SGEFtLWNg~~---------------fnFEtilQaHDs~Vr~m~ws~--- 148 (464)
T KOG0284|consen 97 CPVNVVRWT-------PEGR---RLLTGSQSGEFTLWNGTS---------------FNFETILQAHDSPVRTMKWSH--- 148 (464)
T ss_pred cceeeEEEc-------CCCc---eeEeecccccEEEecCce---------------eeHHHHhhhhcccceeEEEcc---
Confidence 378999999 9994 555555689999999854 455566789999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCC
Q 000654 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1371)
Q Consensus 146 dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~ 225 (1371)
++.++++|..+|.|++|+.. ...++.+..++...+..++| +|+...+++++.||.|+|||..
T Consensus 149 ~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlaf---SpnDskF~t~SdDg~ikiWdf~-------------- 210 (464)
T KOG0284|consen 149 NGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAF---SPNDSKFLTCSDDGTIKIWDFR-------------- 210 (464)
T ss_pred CCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheecc---CCCCceeEEecCCCeEEEEecc--------------
Confidence 99999999999999999974 33344455555555667766 8889999999999999999988
Q ss_pred CCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEee
Q 000654 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1371)
Q Consensus 226 s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~ 305 (1371)
..+....+.||.-.|.++.|+|...+++++|.|..|++||.+++.+ + .++.
T Consensus 211 -------------------~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c-----l-----~tlh 261 (464)
T KOG0284|consen 211 -------------------MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC-----L-----ATLH 261 (464)
T ss_pred -------------------CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcch-----h-----hhhh
Confidence 3445556799999999999999999999999999999999999877 3 3889
Q ss_pred cCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCC
Q 000654 306 GHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQAFL 381 (1371)
Q Consensus 306 gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spd-g~~L~Tgg~Dg~I~lwdl~~~~ 381 (1371)
+|...|..+.|. +++|+|+|+|..++++|+ .-+.+..+++|+.+ |++++|+|- ..+|.+||.||.|..|.+....
T Consensus 262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-heeeccccccccceeeccCCCceEEEeccccc
Confidence 999999999998 689999999999999999 57889999999995 999999994 4588999999999999985211
Q ss_pred cccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCc
Q 000654 382 PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (1371)
Q Consensus 382 ~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~ 441 (1371)
. + ...-..|...|.+++|.|=|.+|+.+++.+
T Consensus 341 p-----------------~-----------~~i~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 341 P-----------------L-----------GEIPPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred c-----------------c-----------cCCCcccccceeeeeccccceeEeecCCCc
Confidence 0 0 001125777899999999999988876554
No 55
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.3e-24 Score=234.57 Aligned_cols=279 Identities=16% Similarity=0.271 Sum_probs=225.4
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC---eEEEEEEeecCccEEEEEeeccccccCCCCcceeeEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg---~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~l 91 (1371)
|...|.-+.|| ++ |+|||+++ |.+..||++... ++.+++.+|.. +|.-|.|| ||. +.+
T Consensus 223 htdEVWfl~FS--~n----GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~-~V~yi~wS-------PDd----ryL 284 (519)
T KOG0293|consen 223 HTDEVWFLQFS--HN----GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ-PVSYIMWS-------PDD----RYL 284 (519)
T ss_pred CCCcEEEEEEc--CC----CeeEeeccCCceEEEEEEecCcceeeeeeeecccC-ceEEEEEC-------CCC----CeE
Confidence 78899999999 88 99999999 799999987543 45677777766 89999999 987 677
Q ss_pred EEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEE
Q 000654 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1371)
Q Consensus 92 a~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~ 170 (1371)
++|| +..+.+||..++. .... --.+|...+.+++|.| ||..+++|+.|+++..||+. |..+
T Consensus 285 laCg~~e~~~lwDv~tgd-------------~~~~-y~~~~~~S~~sc~W~p---Dg~~~V~Gs~dr~i~~wdlD-gn~~ 346 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGD-------------LRHL-YPSGLGFSVSSCAWCP---DGFRFVTGSPDRTIIMWDLD-GNIL 346 (519)
T ss_pred EecCchHheeeccCCcch-------------hhhh-cccCcCCCcceeEEcc---CCceeEecCCCCcEEEecCC-cchh
Confidence 7776 8889999999754 1111 1123567899999999 99999999999999999985 4445
Q ss_pred EEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEE
Q 000654 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1371)
Q Consensus 171 ~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~ 250 (1371)
...++.....++.+++ .+||.++++.+.|..|++++.+ .....
T Consensus 347 ~~W~gvr~~~v~dlai---t~Dgk~vl~v~~d~~i~l~~~e---------------------------------~~~dr- 389 (519)
T KOG0293|consen 347 GNWEGVRDPKVHDLAI---TYDGKYVLLVTVDKKIRLYNRE---------------------------------ARVDR- 389 (519)
T ss_pred hcccccccceeEEEEE---cCCCcEEEEEecccceeeechh---------------------------------hhhhh-
Confidence 5555544455777777 7899999999999999999987 11111
Q ss_pred EEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCcc--EEEEEEc---CCEEEEEe
Q 000654 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR--VWDCCLT---DSFIITAG 325 (1371)
Q Consensus 251 ~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~--I~~l~~s---~~~L~Sgs 325 (1371)
.+..-+.+|++...|.|++++++--.+..+++||+..... ++ .+.||... |-.-+|. ..++++|+
T Consensus 390 ~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l-----v~-----kY~Ghkq~~fiIrSCFgg~~~~fiaSGS 459 (519)
T KOG0293|consen 390 GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL-----VR-----KYFGHKQGHFIIRSCFGGGNDKFIASGS 459 (519)
T ss_pred ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH-----HH-----HhhcccccceEEEeccCCCCcceEEecC
Confidence 1334567899999999999999999999999999997655 22 66787654 3333454 37999999
Q ss_pred CCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCC-EEEEEECCCcEEEEEcC
Q 000654 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 326 ~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~-~L~Tgg~Dg~I~lwdl~ 378 (1371)
+|+.|+||+. +|+++..+.+|.. .|.+++|+|... ++|++|+||+||||.+.
T Consensus 460 ED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 460 EDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9999999999 9999999999998 799999999655 79999999999999874
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5e-24 Score=220.60 Aligned_cols=282 Identities=16% Similarity=0.262 Sum_probs=223.9
Q ss_pred EEEEEEecCCCCCCCCEEEE-Ee------CCcEEEEECCCCeEEEEEEeec-CccEEEEEeeccccccCCCCcceeeEEE
Q 000654 21 SALCFVHLPSHLSSLPFLLA-GS------GSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1371)
Q Consensus 21 tavafs~~pd~~~~~~llaa-G~------dg~I~Iwd~~sg~~l~~~~~~~-~~~I~~i~~s~~~~~~~pdg~~~~~~la 92 (1371)
.++.|| |= -.++++++ +. +|.|.|.++..++-+.++..++ ...+++++|++. .+ +.+++
T Consensus 12 ysvqfS--Pf--~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~-----~e----~~~~~ 78 (311)
T KOG0277|consen 12 YSVQFS--PF--VENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN-----HE----NQVIA 78 (311)
T ss_pred ceeEec--cc--ccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC-----Cc----ceEEE
Confidence 567888 73 22344443 22 3899999997665555555432 236999999933 23 26888
Q ss_pred EECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEE
Q 000654 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1371)
Q Consensus 93 ~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~ 172 (1371)
+.|||+++|||+... -.+++.++.|...|.++.|++ .++..+++++-|++|++|+...++.+.+
T Consensus 79 a~GDGSLrl~d~~~~--------------s~Pi~~~kEH~~EV~Svdwn~--~~r~~~ltsSWD~TiKLW~~~r~~Sv~T 142 (311)
T KOG0277|consen 79 ASGDGSLRLFDLTMP--------------SKPIHKFKEHKREVYSVDWNT--VRRRIFLTSSWDGTIKLWDPNRPNSVQT 142 (311)
T ss_pred EecCceEEEeccCCC--------------CcchhHHHhhhhheEEecccc--ccceeEEeeccCCceEeecCCCCcceEe
Confidence 889999999996543 257888999999999999998 3566788889999999999999999999
Q ss_pred EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEE
Q 000654 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1371)
Q Consensus 173 l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1371)
+.++.. .+|...+.+. ..+++++++.|+.+++||++ ..++.+. +
T Consensus 143 f~gh~~-~Iy~a~~sp~--~~nlfas~Sgd~~l~lwdvr--------------------------------~~gk~~~-i 186 (311)
T KOG0277|consen 143 FNGHNS-CIYQAAFSPH--IPNLFASASGDGTLRLWDVR--------------------------------SPGKFMS-I 186 (311)
T ss_pred ecCCcc-EEEEEecCCC--CCCeEEEccCCceEEEEEec--------------------------------CCCceeE-E
Confidence 888654 5777777443 46799999999999999998 1344444 8
Q ss_pred ecccCCEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC---CEEEEEeCCC
Q 000654 253 VGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDC 328 (1371)
Q Consensus 253 ~gH~~~I~~v~~sp-dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~---~~L~Sgs~Dg 328 (1371)
..|...|.++.|+. +...|+|++.|+.||.||++..+.+ + ..+.+|.-.|..++|+| ..|++++-|=
T Consensus 187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p----l-----~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP----L-----FELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred EeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc----c-----eeecCCceEEEEEecCcchhhHhhhccccc
Confidence 88999999999997 6678999999999999999987652 2 37899999999999995 7899999999
Q ss_pred eEEEEeC--CCcEEEEEeeccCcCEEEEEEcC-CCCEEEEEECCCcEEEEEc
Q 000654 329 TCRVWGS--DGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 329 ~I~VWd~--~g~~l~~l~~h~~~~V~sl~~sp-dg~~L~Tgg~Dg~I~lwdl 377 (1371)
++||||. ....+.+...|.. -|..+.|++ +..++|++|.|..+.||+.
T Consensus 258 T~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 258 TVRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 9999999 3445666777777 488999987 4569999999999999985
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=5.2e-23 Score=251.68 Aligned_cols=280 Identities=19% Similarity=0.292 Sum_probs=225.8
Q ss_pred EEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEE
Q 000654 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1371)
Q Consensus 59 ~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v 138 (1371)
.+..++...|.++.|+ ++|+ .+.++..++.+++|+..... ...+..+.+|...|.++
T Consensus 153 ~~~~~~~~sv~~~~fs-------~~g~---~l~~~~~~~~i~~~~~~~~~-------------~~~~~~l~~h~~~v~~~ 209 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFS-------PDGR---ALAAASSDGLIRIWKLEGIK-------------SNLLRELSGHTRGVSDV 209 (456)
T ss_pred eecccccCceEEEEEc-------CCCC---eEEEccCCCcEEEeeccccc-------------chhhccccccccceeee
Confidence 3334445579999999 9983 43444469999999995421 02556668999999999
Q ss_pred EEEeecCCCcEEEEEECCCcEEEEEC-CCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccc
Q 000654 139 CFLKVCNGNRSLAIGCSDNSIRVWDI-SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1371)
Q Consensus 139 ~fsp~~~dg~~Latgs~Dg~I~vWd~-~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~ 217 (1371)
+|+| ++.++++++.|++|++||+ ..+..++.+.+|.. .+++++| +++++++++|+.|++|+|||++
T Consensus 210 ~fs~---d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~-~v~~~~f---~p~g~~i~Sgs~D~tvriWd~~------ 276 (456)
T KOG0266|consen 210 AFSP---DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST-YVTSVAF---SPDGNLLVSGSDDGTVRIWDVR------ 276 (456)
T ss_pred EECC---CCcEEEEecCCceEEEeeccCCCeEEEEecCCCC-ceEEEEe---cCCCCEEEEecCCCcEEEEecc------
Confidence 9999 9999999999999999999 55688888886655 4688888 7888999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCce
Q 000654 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (1371)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~ 297 (1371)
.+++...+.+|.+.|.+++|++++.+|++++.|+.|++||+.++.. .
T Consensus 277 ---------------------------~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~-----~- 323 (456)
T KOG0266|consen 277 ---------------------------TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK-----L- 323 (456)
T ss_pred ---------------------------CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce-----e-
Confidence 6788999999999999999999999999999999999999999863 0
Q ss_pred eeeceEeecCCcc--EEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCc--CEEEEEEcCCCCEEEEEECCC
Q 000654 298 EVGSSVLYGHNAR--VWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR--GIWRCLYDSLSSLLVTAGFDS 370 (1371)
Q Consensus 298 ~~~~~~~~gh~~~--I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~--~V~sl~~spdg~~L~Tgg~Dg 370 (1371)
.+ ..+.++... +++++|+ +.++++++.|+++++||+ .+..+..+.+|... .+.+..+++.+.++++|+.|+
T Consensus 324 ~~--~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 324 CL--KLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG 401 (456)
T ss_pred ee--ecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCc
Confidence 11 145555554 9999998 689999999999999999 68999999999874 344445578899999999999
Q ss_pred cEEEEEcC-CCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEc
Q 000654 371 AIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (1371)
Q Consensus 371 ~I~lwdl~-~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~ 438 (1371)
.|.+|++. +..++.+++|. ...+..+++++...+++...
T Consensus 402 ~v~~~~~~s~~~~~~l~~h~-----------------------------~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 402 SVYVWDSSSGGILQRLEGHS-----------------------------KAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred eEEEEeCCccchhhhhcCCC-----------------------------CCceeccccCCCcCeeeecC
Confidence 99999995 34444444431 34567778888777777654
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=229.10 Aligned_cols=294 Identities=16% Similarity=0.223 Sum_probs=222.6
Q ss_pred eeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEE
Q 000654 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1371)
Q Consensus 247 ~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sg 324 (1371)
+..+.+..|...|+-+.||++|++|||++.|.+..+|++..... ++.. .++.+|..+|.-+.|+ +++|+++
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----~kl~--~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----FKLK--KTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----eeee--eeeecccCceEEEEECCCCCeEEec
Confidence 34456788999999999999999999999999999999877544 3333 3899999999999999 4899999
Q ss_pred eCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEe
Q 000654 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI 403 (1371)
Q Consensus 325 s~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~ 403 (1371)
+.|..+++||+ +|.....+..-.+..+.+++|.|||..+++|+.|+.+..||++|..+...++..
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-------------- 353 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-------------- 353 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc--------------
Confidence 99999999999 787777665443447999999999999999999999999999887655444332
Q ss_pred eecCCccceeeccCCCccEEEEEEecCCcEEE-EEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCC
Q 000654 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (1371)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv-~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~ 482 (1371)
...|.+++..+||+.++ .+.+..+.. ++.....-..+. .+..+|.+..+ +.
T Consensus 354 ---------------~~~v~dlait~Dgk~vl~v~~d~~i~l---~~~e~~~dr~li--se~~~its~~i--------S~ 405 (519)
T KOG0293|consen 354 ---------------DPKVHDLAITYDGKYVLLVTVDKKIRL---YNREARVDRGLI--SEEQPITSFSI--------SK 405 (519)
T ss_pred ---------------cceeEEEEEcCCCcEEEEEecccceee---echhhhhhhccc--cccCceeEEEE--------cC
Confidence 13489999999997554 455555553 333322212222 33456777766 46
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeec-CCCcEEEEEcCCCcEEEEeCCCCCCcccc
Q 000654 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKS-LGHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (1371)
Q Consensus 483 ~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s-~d~~~L~s~s~dg~I~lWdi~~~~~~~~~ 561 (1371)
+++++++.-.+..+.+||+.......+ +...+.+..+. --||. .+..++++|+.|+.|++|+...+.
T Consensus 406 d~k~~LvnL~~qei~LWDl~e~~lv~k------Y~Ghkq~~fiI-rSCFgg~~~~fiaSGSED~kvyIWhr~sgk----- 473 (519)
T KOG0293|consen 406 DGKLALVNLQDQEIHLWDLEENKLVRK------YFGHKQGHFII-RSCFGGGNDKFIASGSEDSKVYIWHRISGK----- 473 (519)
T ss_pred CCcEEEEEcccCeeEEeecchhhHHHH------hhcccccceEE-EeccCCCCcceEEecCCCceEEEEEccCCc-----
Confidence 678999999999999999985543322 22233333222 23555 455899999999999999987542
Q ss_pred ccCccceeeeeeeeecccCCcEEEEEeecC-CCEEEEecCCCeEEEEEcCc
Q 000654 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFE-DEVLFCGDLRGNLVLFPLLR 611 (1371)
Q Consensus 562 ~~~~~~~l~l~~~~~~~h~~~Itsl~~spd-g~lLatGs~dGtI~Iwd~~~ 611 (1371)
+.+. ..+|...|+|++|+|. -.++|+|+.||+|+||....
T Consensus 474 ---------ll~~-LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 474 ---------LLAV-LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ---------eeEe-ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 3333 4589999999999985 67999999999999998664
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=4.3e-22 Score=261.49 Aligned_cols=319 Identities=14% Similarity=0.206 Sum_probs=231.7
Q ss_pred CCcEEEEECCCCeEEEEEEe----ecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCc
Q 000654 43 GSQVLLYDLEAGTLIRPFQV----FHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPE 117 (1371)
Q Consensus 43 dg~I~Iwd~~sg~~l~~~~~----~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~ 117 (1371)
+|.+++|+..+.+....++. .+...|.+++|+ |+| .++++++ |++|+||++.........
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs-------~dg----~~latgg~D~~I~iwd~~~~~~~~~~---- 521 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFD-------RDG----EFFATAGVNKKIKIFECESIIKDGRD---- 521 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEEC-------CCC----CEEEEEeCCCEEEEEECCcccccccc----
Confidence 46788888876655444332 134489999999 888 4566655 899999998642100000
Q ss_pred cceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEE
Q 000654 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1371)
Q Consensus 118 ~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~La 197 (1371)
.......+. +...|.+++|+| .++.+|++++.|++|++||+.+++.+..+..|.. .++++.+. ..++.+|+
T Consensus 522 ---~~~~~~~~~-~~~~v~~l~~~~--~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~--p~~~~~L~ 592 (793)
T PLN00181 522 ---IHYPVVELA-SRSKLSGICWNS--YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK-RVWSIDYS--SADPTLLA 592 (793)
T ss_pred ---cccceEEec-ccCceeeEEecc--CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC-CEEEEEEc--CCCCCEEE
Confidence 001122233 346899999987 2478999999999999999999988888876654 57788773 13678999
Q ss_pred EEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEc-CCCCEEEEEeC
Q 000654 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS-SCGSKLVSVSD 276 (1371)
Q Consensus 198 sgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~s-pdg~~LaS~s~ 276 (1371)
+|+.|+.|++||+. ....+..+..+ ..|.++.|+ +++.+|++|+.
T Consensus 593 Sgs~Dg~v~iWd~~---------------------------------~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 593 SGSDDGSVKLWSIN---------------------------------QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred EEcCCCEEEEEECC---------------------------------CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence 99999999999998 44455556544 679999995 57899999999
Q ss_pred CCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-CCEEEEEeCCCeEEEEeCC-------CcEEEEEeeccC
Q 000654 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSD-------GKQLKMIKEHIG 348 (1371)
Q Consensus 277 Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-~~~L~Sgs~Dg~I~VWd~~-------g~~l~~l~~h~~ 348 (1371)
|+.|++||++..... . ..+.+|...|+++.|. +.+|++++.|++|++||+. .+++..+.+|..
T Consensus 639 dg~I~iwD~~~~~~~----~-----~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 639 DHKVYYYDLRNPKLP----L-----CTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN 709 (793)
T ss_pred CCeEEEEECCCCCcc----c-----eEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence 999999999875421 1 2677999999999997 6899999999999999983 357888999988
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCcc-ceeeccCCCccEEEEEE
Q 000654 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE-QIRLTDSKSEYVRCLHL 427 (1371)
Q Consensus 349 ~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~-~~~~~~~~~~~V~~laf 427 (1371)
.+..++|+|++.+|++|+.|+.|++|+..... .++......... .-.....+...|.+++|
T Consensus 710 -~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~-----------------~~~s~~~~~~~~~~~~~~~~~~~~V~~v~w 771 (793)
T PLN00181 710 -VKNFVGLSVSDGYIATGSETNEVFVYHKAFPM-----------------PVLSYKFKTIDPVSGLEVDDASQFISSVCW 771 (793)
T ss_pred -CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC-----------------ceEEEecccCCcccccccCCCCcEEEEEEE
Confidence 69999999999999999999999999974211 011100000000 00012345568999999
Q ss_pred ecCCcEEEE-EcCCcEEEEE
Q 000654 428 TSEDTLYIA-TNHGYLYHTK 446 (1371)
Q Consensus 428 s~d~~llv~-t~~G~i~~~~ 446 (1371)
++++..+++ +.+|.+..|.
T Consensus 772 s~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 772 RGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred cCCCCeEEEecCCCcEEEEe
Confidence 999976555 4678777554
No 60
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=7e-23 Score=217.19 Aligned_cols=279 Identities=14% Similarity=0.251 Sum_probs=224.7
Q ss_pred EEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEE
Q 000654 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1371)
Q Consensus 60 ~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v 138 (1371)
+.+|++ .|..+.|+ |+| ..|+++| |..|.+|+.... .+-...+++|.+.|..+
T Consensus 43 l~gh~g-eI~~~~F~-------P~g----s~~aSgG~Dr~I~LWnv~gd--------------ceN~~~lkgHsgAVM~l 96 (338)
T KOG0265|consen 43 LPGHKG-EIYTIKFH-------PDG----SCFASGGSDRAIVLWNVYGD--------------CENFWVLKGHSGAVMEL 96 (338)
T ss_pred cCCCcc-eEEEEEEC-------CCC----CeEeecCCcceEEEEecccc--------------ccceeeeccccceeEee
Confidence 345566 79999999 998 6888877 999999998642 34556778999999999
Q ss_pred EEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCcccc
Q 000654 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPL 218 (1371)
Q Consensus 139 ~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~ 218 (1371)
.|.+ ++..|++++.|++|+.||+++|+.+++++.+..+ +.++. +..-.-.++.+|+.|+++++||++
T Consensus 97 ~~~~---d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~-vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R------- 163 (338)
T KOG0265|consen 97 HGMR---DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF-VNSLD--PSRRGPQLVCSGSDDGTLKLWDIR------- 163 (338)
T ss_pred eecc---CCCEEEEecCCceEEEEecccceeeehhccccce-eeecC--ccccCCeEEEecCCCceEEEEeec-------
Confidence 9999 9999999999999999999999999999888764 33332 222234578889999999999998
Q ss_pred CCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCcee
Q 000654 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298 (1371)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~ 298 (1371)
+...++.+. ..-.++++.|..++..+++|+-|+.|++||++.....
T Consensus 164 --------------------------~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~------- 209 (338)
T KOG0265|consen 164 --------------------------KKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL------- 209 (338)
T ss_pred --------------------------ccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcce-------
Confidence 333343332 3457899999999999999999999999999876652
Q ss_pred eeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-----CCcEEEEEeeccC---cCEEEEEEcCCCCEEEEEEC
Q 000654 299 VGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-----DGKQLKMIKEHIG---RGIWRCLYDSLSSLLVTAGF 368 (1371)
Q Consensus 299 ~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-----~g~~l~~l~~h~~---~~V~sl~~spdg~~L~Tgg~ 368 (1371)
.++.||...|+.+..+ +.++.+-+.|.++++||+ ..+++..+.+|.. .....++|+|++..+-.|+.
T Consensus 210 ---~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~ 286 (338)
T KOG0265|consen 210 ---YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA 286 (338)
T ss_pred ---EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccc
Confidence 4899999999999998 789999999999999998 2355888877642 24567889999999999999
Q ss_pred CCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEE-cCCcEE
Q 000654 369 DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLY 443 (1371)
Q Consensus 369 Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t-~~G~i~ 443 (1371)
|..+.+||...+ ..+..+.+|.+.|.+++|.|...++... ++..++
T Consensus 287 dr~vyvwd~~~r-----------------------------~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 287 DRFVYVWDTTSR-----------------------------RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred cceEEEeecccc-----------------------------cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeE
Confidence 999999998532 1134556788899999999988766654 455555
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=4.4e-23 Score=251.14 Aligned_cols=270 Identities=23% Similarity=0.379 Sum_probs=234.5
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEE-EEeecCccEEEEEeeccccccCCCCcceeeEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP-FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~-~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~ 93 (1371)
+...+++..|+ + .++.+|+ +++|++||..++..+.. +.+|.+ .|.++++. ..+ .++++
T Consensus 207 ~~~~~~~~q~~--~------~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g-~V~~l~~~-------~~~----~~lvs 266 (537)
T KOG0274|consen 207 DDHVVLCLQLH--D------GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFG-GVWGLAFP-------SGG----DKLVS 266 (537)
T ss_pred Ccchhhhheee--c------CeEEecCCCceeEEeecccceEEEeeccCCCC-CceeEEEe-------cCC----CEEEE
Confidence 35567888888 4 5788887 69999999999998887 888887 89999997 422 35555
Q ss_pred E-CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEE
Q 000654 94 F-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1371)
Q Consensus 94 ~-gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~ 172 (1371)
+ .|+++++||..+ ..+...+.+|.+.|.++...+ .++++|+.|.+|++|++.++..+..
T Consensus 267 gS~D~t~rvWd~~s---------------g~C~~~l~gh~stv~~~~~~~-----~~~~sgs~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 267 GSTDKTERVWDCST---------------GECTHSLQGHTSSVRCLTIDP-----FLLVSGSRDNTVKVWDVTNGACLNL 326 (537)
T ss_pred EecCCcEEeEecCC---------------CcEEEEecCCCceEEEEEccC-----ceEeeccCCceEEEEeccCcceEEE
Confidence 4 499999999875 568889999999999998865 6788899999999999999999998
Q ss_pred EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEE
Q 000654 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1371)
Q Consensus 173 l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1371)
+.+ +...+.++.+ ++.++++|+.|+.|+|||+. .++++..+
T Consensus 327 ~~~-h~~~V~~v~~-----~~~~lvsgs~d~~v~VW~~~---------------------------------~~~cl~sl 367 (537)
T KOG0274|consen 327 LRG-HTGPVNCVQL-----DEPLLVSGSYDGTVKVWDPR---------------------------------TGKCLKSL 367 (537)
T ss_pred ecc-ccccEEEEEe-----cCCEEEEEecCceEEEEEhh---------------------------------hceeeeee
Confidence 887 5556778766 48899999999999999998 78899999
Q ss_pred ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCC-cccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEE
Q 000654 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCR 331 (1371)
Q Consensus 253 ~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~-~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~ 331 (1371)
.||...|.++.+.+. ..+++|+.|++|++||+.+. ++ + .++.+|.+.+..+.+.+++|++++.|++|+
T Consensus 368 ~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c-----~-----~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 368 SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC-----I-----HTLQGHTSLVSSLLLRDNFLVSSSADGTIK 436 (537)
T ss_pred cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh-----h-----hhhcCCcccccccccccceeEeccccccEE
Confidence 999999999988766 89999999999999999997 55 3 388999999999999999999999999999
Q ss_pred EEeC-CCcEEEEEee-ccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 332 VWGS-DGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 332 VWd~-~g~~l~~l~~-h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
+||. ++++++++.+ |.+ +|+.+++. ...+++++.||++++||++
T Consensus 437 ~WD~~~~~~~~~~~~~~~~-~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGRHVG-GVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred EeecccCceeeeeccCCcc-cEEEeecC--cceEEEEecCCeeEEEecc
Confidence 9999 8999999998 556 69888876 4678999999999999994
No 62
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.5e-23 Score=209.50 Aligned_cols=251 Identities=20% Similarity=0.235 Sum_probs=208.7
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeC
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~ 201 (1371)
.+.++.+.+|++.|+++.|+- +|+|.++++.|++|++|+...+.+++++.++...+ ..++. +.|...+++|+.
T Consensus 7 tkr~~~l~~~qgaV~avryN~---dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EV-lD~~~---s~Dnskf~s~Gg 79 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNV---DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEV-LDAAL---SSDNSKFASCGG 79 (307)
T ss_pred chhceeecccccceEEEEEcc---CCCEEEEcCCCceEEeecccccceeeeecCCCcee-eeccc---cccccccccCCC
Confidence 345677889999999999998 99999999999999999999999999998876543 34433 557789999999
Q ss_pred CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 000654 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1371)
Q Consensus 202 dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~Vr 281 (1371)
|..+.+||+. +++.++++.||.+.|+.|+|+.+...+++||-|.++|
T Consensus 80 Dk~v~vwDV~---------------------------------TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r 126 (307)
T KOG0316|consen 80 DKAVQVWDVN---------------------------------TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVR 126 (307)
T ss_pred CceEEEEEcc---------------------------------cCeeeeecccccceeeEEEecCcceEEEeccccceeE
Confidence 9999999999 7889999999999999999999999999999999999
Q ss_pred EEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCC
Q 000654 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1371)
Q Consensus 282 iWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg 360 (1371)
+||-+.... +++. .+..-...|.++...+..|++|+.||++|.||+ .|+....+-+| +|+++.|++|+
T Consensus 127 ~wDCRS~s~------ePiQ--ildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~ 195 (307)
T KOG0316|consen 127 LWDCRSRSF------EPIQ--ILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDG 195 (307)
T ss_pred EEEcccCCC------Cccc--hhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecCCC
Confidence 999988654 3332 666667889999999999999999999999999 78776666555 79999999999
Q ss_pred CEEEEEECCCcEEEEEc-CCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCC-cEEEEEc
Q 000654 361 SLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATN 438 (1371)
Q Consensus 361 ~~L~Tgg~Dg~I~lwdl-~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~-~llv~t~ 438 (1371)
+.++.++.|+++++.|- +|++++.+.+|.. .++-...+++... ..+.++.
T Consensus 196 nc~La~~l~stlrLlDk~tGklL~sYkGhkn----------------------------~eykldc~l~qsdthV~sgSE 247 (307)
T KOG0316|consen 196 NCSLASSLDSTLRLLDKETGKLLKSYKGHKN----------------------------MEYKLDCCLNQSDTHVFSGSE 247 (307)
T ss_pred CEEEEeeccceeeecccchhHHHHHhccccc----------------------------ceeeeeeeecccceeEEeccC
Confidence 99999999999999998 5688888888762 0112223333333 4555667
Q ss_pred CCcEEEEEeecCC
Q 000654 439 HGYLYHTKLCDMD 451 (1371)
Q Consensus 439 ~G~i~~~~l~~~~ 451 (1371)
+|.+++|++-+..
T Consensus 248 DG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 248 DGKVYFWDLVDET 260 (307)
T ss_pred CceEEEEEeccce
Confidence 9999988876643
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=5.3e-22 Score=225.73 Aligned_cols=282 Identities=20% Similarity=0.337 Sum_probs=224.4
Q ss_pred eeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeE
Q 000654 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (1371)
Q Consensus 126 ~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I 205 (1371)
.++.+|.++|.+++|+| ++++|++++.|+.|++|++.+++....+..+... +..+.+ .+++..+++++.+|.|
T Consensus 3 ~~~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~-i~~~~~---~~~~~~l~~~~~~~~i 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAA---SADGTYLASGSSDKTI 75 (289)
T ss_pred hHhcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc-eeEEEE---CCCCCEEEEEcCCCeE
Confidence 45678999999999999 9999999999999999999988776666655443 345555 5677899999999999
Q ss_pred EEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 000654 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (1371)
Q Consensus 206 ~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl 285 (1371)
++|++. .......+..|...|.++.|++++.++++++.|+.|++||+
T Consensus 76 ~i~~~~---------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 76 RLWDLE---------------------------------TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred EEEEcC---------------------------------cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 999998 34556677789999999999999999999998999999999
Q ss_pred cCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCE
Q 000654 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (1371)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~ 362 (1371)
.+.+. . ..+..|...|.+++|++ .++++++.|+.+++||+ .++.+..+..|.. .|.+++|+|+++.
T Consensus 123 ~~~~~-----~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~ 191 (289)
T cd00200 123 ETGKC-----L-----TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEK 191 (289)
T ss_pred CCcEE-----E-----EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCE
Confidence 86544 2 25568899999999984 67777777999999999 6888888888887 6999999999999
Q ss_pred EEEEECCCcEEEEEcCC-CCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEc-CC
Q 000654 363 LVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HG 440 (1371)
Q Consensus 363 L~Tgg~Dg~I~lwdl~~-~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~-~G 440 (1371)
+++++.|+.+++||+.. ..+. .+..+...+.+++|++++.+++++. +|
T Consensus 192 l~~~~~~~~i~i~d~~~~~~~~------------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTGKCLG------------------------------TLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEEecCCCcEEEEECCCCceec------------------------------chhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 99999999999999953 1111 1123445789999999988888877 89
Q ss_pred cEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEE
Q 000654 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1371)
Q Consensus 441 ~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwd 500 (1371)
.+..|++.. ........ .+...+.++.+ .+++.++++++.||.+++|+
T Consensus 242 ~i~i~~~~~---~~~~~~~~-~~~~~i~~~~~--------~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRT---GECVQTLS-GHTNSVTSLAW--------SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCC---ceeEEEcc-ccCCcEEEEEE--------CCCCCEEEEecCCCeEEecC
Confidence 888766543 22122223 33456777766 34468999999999999995
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=6.9e-23 Score=223.11 Aligned_cols=282 Identities=19% Similarity=0.259 Sum_probs=219.4
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|...|.+|... .+.+++|+ ||.++|||. .|+.+..+.+|.+ +|..+++... .+.. ..++++
T Consensus 104 hdDWVSsv~~~--------~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~-~ik~v~~v~~----n~~~----~~fvsa 165 (423)
T KOG0313|consen 104 HDDWVSSVKGA--------SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTG-PIKSVAWVIK----NSSS----CLFVSA 165 (423)
T ss_pred chhhhhhhccc--------CceEEEeecCCeeEEEec-CCceEEEEecCCc-ceeeeEEEec----CCcc----ceEEEe
Confidence 55667777665 36788877 999999996 5788888888776 8998887621 1221 345555
Q ss_pred C-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC------
Q 000654 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS------ 167 (1371)
Q Consensus 95 g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~------ 167 (1371)
+ |.++++|.++.+.. ..+.+...+||...|-+|...+ ++..+++|+.|.+|.||+..+.
T Consensus 166 s~Dqtl~Lw~~~~~~~-----------~~~~~~~~~GHk~~V~sVsv~~---sgtr~~SgS~D~~lkiWs~~~~~~~~~E 231 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGEN-----------KVKALKVCRGHKRSVDSVSVDS---SGTRFCSGSWDTMLKIWSVETDEEDELE 231 (423)
T ss_pred cCCceEEEEEecCchh-----------hhhHHhHhcccccceeEEEecC---CCCeEEeecccceeeecccCCCcccccc
Confidence 5 99999999986441 1344455569999999999999 9999999999999999993211
Q ss_pred -------------------eEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCC
Q 000654 168 -------------------SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1371)
Q Consensus 168 -------------------~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~ 228 (1371)
.++..+.+|. ..+.++.| + +...+++++.|.+|+.||+.
T Consensus 232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt-~~Vs~V~w---~-d~~v~yS~SwDHTIk~WDle----------------- 289 (423)
T KOG0313|consen 232 SSSNRRRKKQKREKEGGTRTPLVTLEGHT-EPVSSVVW---S-DATVIYSVSWDHTIKVWDLE----------------- 289 (423)
T ss_pred ccchhhhhhhhhhhcccccCceEEecccc-cceeeEEE---c-CCCceEeecccceEEEEEee-----------------
Confidence 1122333333 34555655 3 36789999999999999999
Q ss_pred CCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCC
Q 000654 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (1371)
Q Consensus 229 ~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~ 308 (1371)
.+..+..+. ....+++|.++|..++||+|+.|+.+|+||.+.+.. ..+. ..+.||.
T Consensus 290 ----------------tg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g------s~v~-~s~~gH~ 345 (423)
T KOG0313|consen 290 ----------------TGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG------SVVS-QSLIGHK 345 (423)
T ss_pred ----------------cccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCC------ceeE-Eeeecch
Confidence 444444444 346789999999999999999999999999998743 1122 4889999
Q ss_pred ccEEEEEEcC---CEEEEEeCCCeEEEEeC-CC-cEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 309 ARVWDCCLTD---SFIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 309 ~~I~~l~~s~---~~L~Sgs~Dg~I~VWd~-~g-~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
..|.++.|++ .+|++++.|+++++||+ .. .++..+.+|..+ |.++.|+ ++.++++||.|.+|+++.-
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK-vl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK-VLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce-EEEEecc-CCceEEeccCcceEEEecc
Confidence 9999999984 78999999999999999 44 499999999885 9999997 4679999999999999875
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=8.9e-23 Score=222.27 Aligned_cols=273 Identities=18% Similarity=0.272 Sum_probs=209.5
Q ss_pred CCCccEEEEeCCCCc------ccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeE----EEEEEeecCccEEE
Q 000654 1 MGKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTL----IRPFQVFHGIRLHG 70 (1371)
Q Consensus 1 s~D~tV~iWdl~~~~------h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~----l~~~~~~~~~~I~~ 70 (1371)
++||++||||..... |.++|.++++.. ++. ....++.++.|.+|++|.++.++. +...++|++ .|.+
T Consensus 122 sYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~-~n~-~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~-~V~s 198 (423)
T KOG0313|consen 122 SYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVI-KNS-SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR-SVDS 198 (423)
T ss_pred ecCCeeEEEecCCceEEEEecCCcceeeeEEEe-cCC-ccceEEEecCCceEEEEEecCchhhhhHHhHhccccc-ceeE
Confidence 589999999987654 889999777652 440 112355555599999999987653 233447777 8999
Q ss_pred EEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCC-CCCCCC---------ccceeeeeeeeccCCCCcEEEEE
Q 000654 71 ISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSP-NSQYQP---------ETCVNLSLVQSLPRLSHWVFDVC 139 (1371)
Q Consensus 71 i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~-~~~~~~---------~~~v~~~~~~~l~gh~~~I~~v~ 139 (1371)
+... ++| ..+++++ |.+|+||+....... .+.... .......++.++.||+++|.+|.
T Consensus 199 Vsv~-------~sg----tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 199 VSVD-------SSG----TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred EEec-------CCC----CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 9988 888 5666665 999999994322100 000000 01112456788999999999999
Q ss_pred EEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccC
Q 000654 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (1371)
Q Consensus 140 fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~ 219 (1371)
|++ ...+++++.|.+|+.||+.++....++.+.. .+.++.+ ++...+|++|+.|..|++||++++
T Consensus 268 w~d----~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~~i~~---~~~~~Ll~~gssdr~irl~DPR~~------ 332 (423)
T KOG0313|consen 268 WSD----ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLNCISY---SPLSKLLASGSSDRHIRLWDPRTG------ 332 (423)
T ss_pred EcC----CCceEeecccceEEEEEeecccceeeeecCc--ceeEeec---ccccceeeecCCCCceeecCCCCC------
Confidence 985 4678999999999999999999888877654 3556666 667889999999999999999822
Q ss_pred CCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcccCCCCcee
Q 000654 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298 (1371)
Q Consensus 220 ~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg-~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~ 298 (1371)
......+.+.||..+|.++.|+|.. .+|++++.|+++++||++....+ +
T Consensus 333 ------------------------~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p----l-- 382 (423)
T KOG0313|consen 333 ------------------------DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP----L-- 382 (423)
T ss_pred ------------------------CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc----c--
Confidence 1344567899999999999999965 46899999999999999987631 2
Q ss_pred eeceEeecCCccEEEEEEc-CCEEEEEeCCCeEEEEeC
Q 000654 299 VGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS 335 (1371)
Q Consensus 299 ~~~~~~~gh~~~I~~l~~s-~~~L~Sgs~Dg~I~VWd~ 335 (1371)
..+.+|...|.++.|. +..|++||.|++|+|+..
T Consensus 383 ---ydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 383 ---YDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ---eeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 4889999999999999 679999999999999875
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=5.2e-23 Score=230.57 Aligned_cols=287 Identities=16% Similarity=0.187 Sum_probs=223.9
Q ss_pred eEEEEEEeecCccEEEEEeeccccccCC-CCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCC
Q 000654 55 TLIRPFQVFHGIRLHGISCNFINCTEGS-VSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS 132 (1371)
Q Consensus 55 ~~l~~~~~~~~~~I~~i~~s~~~~~~~p-dg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~ 132 (1371)
+.++.+.+|.. .|.++.|. | .+ .+|+++| |+.|+||++... ..+++++.+|.
T Consensus 205 k~~~~~~gH~k-gvsai~~f-------p~~~----hLlLS~gmD~~vklW~vy~~--------------~~~lrtf~gH~ 258 (503)
T KOG0282|consen 205 KLSHNLSGHTK-GVSAIQWF-------PKKG----HLLLSGGMDGLVKLWNVYDD--------------RRCLRTFKGHR 258 (503)
T ss_pred hheeeccCCcc-ccchhhhc-------ccee----eEEEecCCCceEEEEEEecC--------------cceehhhhcch
Confidence 45667777766 79999999 6 44 6888887 999999999862 57899999999
Q ss_pred CcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEccc
Q 000654 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1371)
Q Consensus 133 ~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~ 212 (1371)
.+|.+++|++ +|..+.+++.|+.|++||+++|+++..++. ++..+++.++++. .+.+++|+.|+.|+.||++
T Consensus 259 k~Vrd~~~s~---~g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiR- 330 (503)
T KOG0282|consen 259 KPVRDASFNN---CGTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIR- 330 (503)
T ss_pred hhhhhhhccc---cCCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCCCC--CcEEEEecCCCcEEEEecc-
Confidence 9999999999 999999999999999999999999988854 4567788874432 3889999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccC
Q 000654 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1371)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~ 292 (1371)
.++.++.+..|-+.|..|.|-++++++++.++|++++||+...+-.
T Consensus 331 --------------------------------s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~-- 376 (503)
T KOG0282|consen 331 --------------------------------SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP-- 376 (503)
T ss_pred --------------------------------chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc--
Confidence 5666777888999999999999999999999999999999987643
Q ss_pred CCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeCC----CcEEEEEeeccCcC-EEEEEEcCCCCEEEEEE
Q 000654 293 SDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD----GKQLKMIKEHIGRG-IWRCLYDSLSSLLVTAG 367 (1371)
Q Consensus 293 ~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~~----g~~l~~l~~h~~~~-V~sl~~spdg~~L~Tgg 367 (1371)
++.+ .....|+.+...+.-.+++++.=+.|..|.++.+. ....+.+.+|...+ -..+.|||||.+|++|.
T Consensus 377 ---ik~i--~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 377 ---IKNI--ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred ---chhh--cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence 2211 12233444433333346899999999999999972 23445677775421 35688999999999999
Q ss_pred CCCcEEEEEcCC-CCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCC--cEEEEEcCCcEEE
Q 000654 368 FDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLYIATNHGYLYH 444 (1371)
Q Consensus 368 ~Dg~I~lwdl~~-~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~--~llv~t~~G~i~~ 444 (1371)
.||.+.+||.+. +++. .+..|.+.+..+.|.|.. .++.++=+|.|..
T Consensus 452 sdG~v~~wdwkt~kl~~------------------------------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 452 SDGKVNFWDWKTTKLVS------------------------------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKI 501 (503)
T ss_pred CCccEEEeechhhhhhh------------------------------ccccCCcceEEEEecCCCcceeEecccCceeEe
Confidence 999999999853 2222 334566778889999965 3444444676653
No 67
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=1.1e-22 Score=227.92 Aligned_cols=257 Identities=18% Similarity=0.266 Sum_probs=209.2
Q ss_pred CCCccEEEEeCCCCc--------ccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEE
Q 000654 1 MGKKDLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1371)
Q Consensus 1 s~D~tV~iWdl~~~~--------h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~ 72 (1371)
+.|+.|+||++-... |..+|.+++|+ ++ +.++|.++.|++|++||.++|+++..+.. +..+.++.
T Consensus 234 gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s--~~---g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvk 306 (503)
T KOG0282|consen 234 GMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFN--NC---GTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVK 306 (503)
T ss_pred CCCceEEEEEEecCcceehhhhcchhhhhhhhcc--cc---CCeeeeeecceeeeeeccccceEEEEEec--CCCceeee
Confidence 468999999988733 88899999999 76 23566666799999999999999888874 44789999
Q ss_pred eeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEE
Q 000654 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1371)
Q Consensus 73 ~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Lat 152 (1371)
|. ||+. ..+|+...|+.|+.||++. .+.++.+..|-+.|.++.|.+ ++.++++
T Consensus 307 f~-------pd~~--n~fl~G~sd~ki~~wDiRs---------------~kvvqeYd~hLg~i~~i~F~~---~g~rFis 359 (503)
T KOG0282|consen 307 FH-------PDNQ--NIFLVGGSDKKIRQWDIRS---------------GKVVQEYDRHLGAILDITFVD---EGRRFIS 359 (503)
T ss_pred cC-------CCCC--cEEEEecCCCcEEEEeccc---------------hHHHHHHHhhhhheeeeEEcc---CCceEee
Confidence 99 7762 1344444599999999986 457778888999999999999 9999999
Q ss_pred EECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000654 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1371)
Q Consensus 153 gs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1371)
.+.|++++||+...+..+..+..+....+.++.. .|++.++++-+.|+.|.++....
T Consensus 360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~---~P~~~~~~aQs~dN~i~ifs~~~-------------------- 416 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTL---HPNGKWFAAQSMDNYIAIFSTVP-------------------- 416 (503)
T ss_pred eccCccEEEEEcCCCccchhhcchhhccCcceec---CCCCCeehhhccCceEEEEeccc--------------------
Confidence 9999999999998887766555444333334444 78899999999999999999761
Q ss_pred CcceeeecccccceeeEEEEeccc--CCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCcc
Q 000654 233 DFKCFKLQDQQHTAVNLFRLVGHE--GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1371)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~l~gH~--~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~ 310 (1371)
.........+.||. +.-..+.|||||.+|++|+.||.+.+||..+.+. + ..+..|...
T Consensus 417 ----------~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl-----~-----~~lkah~~~ 476 (503)
T KOG0282|consen 417 ----------PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL-----V-----SKLKAHDQP 476 (503)
T ss_pred ----------ccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh-----h-----hccccCCcc
Confidence 11223345567885 5567789999999999999999999999998665 2 278899999
Q ss_pred EEEEEEc---CCEEEEEeCCCeEEEEe
Q 000654 311 VWDCCLT---DSFIITAGEDCTCRVWG 334 (1371)
Q Consensus 311 I~~l~~s---~~~L~Sgs~Dg~I~VWd 334 (1371)
+..+.|+ ++.+||++-||.|++|+
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 9999999 48999999999999996
No 68
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9.8e-22 Score=203.73 Aligned_cols=254 Identities=20% Similarity=0.316 Sum_probs=196.1
Q ss_pred CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC-eEEEEE
Q 000654 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEV 173 (1371)
Q Consensus 95 gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~-~~~~~l 173 (1371)
|.|++.|.++..+. .......+. -.+.+.+++|++ ...+.+++++.||++++||.... .++..+
T Consensus 36 G~G~L~ile~~~~~------------gi~e~~s~d-~~D~LfdV~Wse--~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~ 100 (311)
T KOG0277|consen 36 GNGRLFILEVTDPK------------GIQECQSYD-TEDGLFDVAWSE--NHENQVIAASGDGSLRLFDLTMPSKPIHKF 100 (311)
T ss_pred cCceEEEEecCCCC------------CeEEEEeee-cccceeEeeecC--CCcceEEEEecCceEEEeccCCCCcchhHH
Confidence 36899999986322 133333332 457899999998 34567888999999999997543 345555
Q ss_pred ecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe
Q 000654 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1371)
Q Consensus 174 ~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1371)
+.|.+ .++++.+- ..+...+++++.|++|++|+.. ....+.++.
T Consensus 101 kEH~~-EV~Svdwn--~~~r~~~ltsSWD~TiKLW~~~---------------------------------r~~Sv~Tf~ 144 (311)
T KOG0277|consen 101 KEHKR-EVYSVDWN--TVRRRIFLTSSWDGTIKLWDPN---------------------------------RPNSVQTFN 144 (311)
T ss_pred Hhhhh-heEEeccc--cccceeEEeeccCCceEeecCC---------------------------------CCcceEeec
Confidence 55544 57787652 2345678888999999999998 566788899
Q ss_pred cccCCEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCe
Q 000654 254 GHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCT 329 (1371)
Q Consensus 254 gH~~~I~~v~~sp-dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~ 329 (1371)
||...|...+|+| ..+.++++|.|+++++||++..... ..+..|..+|.++.|+ +..|+||+.|+.
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~----------~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF----------MSIEAHNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce----------eEEEeccceeEeecccccCCcEEEecCCCce
Confidence 9999999999999 5789999999999999999876441 3678899999999998 689999999999
Q ss_pred EEEEeC--CCcEEEEEeeccCcCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeec
Q 000654 330 CRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIP 406 (1371)
Q Consensus 330 I~VWd~--~g~~l~~l~~h~~~~V~sl~~spdg-~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~ 406 (1371)
||+||+ -..++..+.+|.- +|+.++|||.. ..|++++.|-++||||.....
T Consensus 215 vr~wDir~~r~pl~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d------------------------- 268 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQD------------------------- 268 (311)
T ss_pred EEEEehhhccccceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccch-------------------------
Confidence 999999 3567889999998 79999999975 489999999999999984210
Q ss_pred CCccceeeccCCCccEEEEEEecCC-cEEEEEc
Q 000654 407 NFSEQIRLTDSKSEYVRCLHLTSED-TLYIATN 438 (1371)
Q Consensus 407 ~~~~~~~~~~~~~~~V~~lafs~d~-~llv~t~ 438 (1371)
..+...+.|++.+..+.|++.. .+++.++
T Consensus 269 ---s~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 269 ---SAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ---hhhhhhhccceEEeccccccccCceeeecc
Confidence 0111233567778888888743 4666554
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.89 E-value=3.1e-21 Score=235.09 Aligned_cols=259 Identities=23% Similarity=0.353 Sum_probs=212.9
Q ss_pred eEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeee-ccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC
Q 000654 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1371)
Q Consensus 89 ~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~-l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~ 167 (1371)
.++....+++|++|+... ...+.. +.||.+.|++++|.. .+.+|++|+.|.++++||..+|
T Consensus 220 ~~~~~s~~~tl~~~~~~~---------------~~~i~~~l~GH~g~V~~l~~~~---~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNN---------------GYLILTRLVGHFGGVWGLAFPS---GGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred eEEecCCCceeEEeeccc---------------ceEEEeeccCCCCCceeEEEec---CCCEEEEEecCCcEEeEecCCC
Confidence 455556689999999875 344444 999999999999986 6789999999999999999999
Q ss_pred eEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccccee
Q 000654 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1371)
Q Consensus 168 ~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~ 247 (1371)
.+...+.++.. .+.++.. ...++++|+.|.+|++|++. .+.
T Consensus 282 ~C~~~l~gh~s-tv~~~~~-----~~~~~~sgs~D~tVkVW~v~---------------------------------n~~ 322 (537)
T KOG0274|consen 282 ECTHSLQGHTS-SVRCLTI-----DPFLLVSGSRDNTVKVWDVT---------------------------------NGA 322 (537)
T ss_pred cEEEEecCCCc-eEEEEEc-----cCceEeeccCCceEEEEecc---------------------------------Ccc
Confidence 99999986654 4555543 56688889999999999998 677
Q ss_pred eEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC-CEEEEEeC
Q 000654 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGE 326 (1371)
Q Consensus 248 ~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~-~~L~Sgs~ 326 (1371)
.+..+.+|.++|+++..+ +.++++|+.|++|++||+...++ + ..+.||..+|.++.+.+ +++++|+.
T Consensus 323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c-----l-----~sl~gH~~~V~sl~~~~~~~~~Sgs~ 390 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC-----L-----KSLSGHTGRVYSLIVDSENRLLSGSL 390 (537)
T ss_pred eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee-----e-----eeecCCcceEEEEEecCcceEEeeee
Confidence 888888999999999997 88999999999999999997665 3 38999999999999998 99999999
Q ss_pred CCeEEEEeC-CC-cEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc-CCCCcccccCCCccccccCCccEEEe
Q 000654 327 DCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSI 403 (1371)
Q Consensus 327 Dg~I~VWd~-~g-~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl-~~~~~~~l~~~~~~~~~~~~~~i~s~ 403 (1371)
|++|++||+ +. +++.++.+|.. -|..+.+ .+++|++++.|++|++||. ++.++++++++
T Consensus 391 D~~IkvWdl~~~~~c~~tl~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--------------- 452 (537)
T KOG0274|consen 391 DTTIKVWDLRTKRKCIHTLQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR--------------- 452 (537)
T ss_pred ccceEeecCCchhhhhhhhcCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeeeccC---------------
Confidence 999999999 56 69999999998 4766555 5789999999999999998 34444444431
Q ss_pred eecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeec
Q 000654 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (1371)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~ 449 (1371)
+...|..+++. +..+++++.+|.+..+++..
T Consensus 453 --------------~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 453 --------------HVGGVSALALG-KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred --------------CcccEEEeecC-cceEEEEecCCeeEEEeccc
Confidence 22446666665 44678888899888665544
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.4e-21 Score=203.23 Aligned_cols=295 Identities=14% Similarity=0.254 Sum_probs=230.0
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|...|..++.. .. .+++.+++ |.+-+||.+++|.++.++.+|.+ .|.+|+|+ +.+. .++.++
T Consensus 147 HkDGiW~Vaa~--~t----qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G-SVNsikfh-------~s~~---L~lTaS 209 (481)
T KOG0300|consen 147 HKDGIWHVAAD--ST----QPICGTASADHTARIWSLESGACLATYTGHTG-SVNSIKFH-------NSGL---LLLTAS 209 (481)
T ss_pred cccceeeehhh--cC----CcceeecccccceeEEeeccccceeeeccccc-ceeeEEec-------cccc---eEEEcc
Confidence 66778888776 43 56666666 79999999999999999999888 89999999 7762 455556
Q ss_pred CCCeEEEEEecc----CC--CCCCCC-----------CC--------ccceeeeeeeeccCCCCcEEEEEEEeecCCCcE
Q 000654 95 GEKRVKLFELNF----EL--SPNSQY-----------QP--------ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS 149 (1371)
Q Consensus 95 gd~sV~vwdl~~----~~--~~~~~~-----------~~--------~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~ 149 (1371)
||++..||.... +. .+...- .+ |.+..-.++..+.+|...|.+..|.. .|+.
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~---gg~Q 286 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA---GGQQ 286 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc---Ccce
Confidence 799999998321 11 000000 00 11122346778999999999999998 8999
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCC
Q 000654 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1371)
Q Consensus 150 Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~ 229 (1371)
+++++.|.+..+||++++..+..+.+|...+..+. ..|...++++.+.|.+.++||++
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs----tHptQrLVvTsSrDtTFRLWDFR------------------ 344 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHCS----THPTQRLVVTSSRDTTFRLWDFR------------------ 344 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhccccc----cCCcceEEEEeccCceeEeccch------------------
Confidence 99999999999999999999999988776544332 25778899999999999999998
Q ss_pred CCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCc
Q 000654 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1371)
Q Consensus 230 ~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~ 309 (1371)
.....+..|.||...|+++.|..+. .++++|+|++|++||+++.+.+ + ...-...
T Consensus 345 --------------eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp----l------ATIRtdS 399 (481)
T KOG0300|consen 345 --------------EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP----L------ATIRTDS 399 (481)
T ss_pred --------------hhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc----c------eeeecCC
Confidence 1345678899999999999998764 5899999999999999987653 1 2223456
Q ss_pred cEEEEEEc--CCEEEEEeCCCeEEEEeCCCcEEEEE-----eeccCcCEEEEEEcCCC--CEEEEEECCCcEEEEEcC
Q 000654 310 RVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMI-----KEHIGRGIWRCLYDSLS--SLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 310 ~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~g~~l~~l-----~~h~~~~V~sl~~spdg--~~L~Tgg~Dg~I~lwdl~ 378 (1371)
++..++.+ ...|+.--.+..|++||++|..+..+ .+|.. -|+|++|..+. .-|+|+|.|..+.-|.+.
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR-MV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR-MVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce-eeeeeeccccCcccccccccccceeeeeEec
Confidence 77778887 45778888889999999988766554 46777 59999997654 368999999999999884
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=5.5e-21 Score=214.96 Aligned_cols=280 Identities=16% Similarity=0.225 Sum_probs=224.8
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g 95 (1371)
...+|++++|+ |. . -.-+|+.+.-.+.||+..+-..+.++..|++ .|.++.|. .|| .++++++
T Consensus 25 e~~~vssl~fs--p~--~-P~d~aVt~S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR-------~DG----~LlaaGD 87 (487)
T KOG0310|consen 25 EHNSVSSLCFS--PK--H-PYDFAVTSSVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFR-------SDG----RLLAAGD 87 (487)
T ss_pred ccCcceeEecC--CC--C-CCceEEecccEEEEEecchhhhhhhHHhhcc-ceeEEEee-------cCC----eEEEccC
Confidence 34679999999 85 1 2235555567899999988877777777777 79999999 998 6777776
Q ss_pred -CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEe
Q 000654 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1371)
Q Consensus 96 -d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~ 174 (1371)
.|.|+|||+.+ -..+..+.+|+.+|..+.|+| .++..|++|+.|+.+++||+.+......+.
T Consensus 88 ~sG~V~vfD~k~---------------r~iLR~~~ah~apv~~~~f~~--~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~ 150 (487)
T KOG0310|consen 88 ESGHVKVFDMKS---------------RVILRQLYAHQAPVHVTKFSP--QDNTMLVSGSDDKVVKYWDLSTAYVQAELS 150 (487)
T ss_pred CcCcEEEecccc---------------HHHHHHHhhccCceeEEEecc--cCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence 59999999653 235677889999999999999 467788999999999999999998766676
Q ss_pred cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEec
Q 000654 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1371)
Q Consensus 175 ~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g 254 (1371)
++.. .+.+..+. +.++.++++|+.||.|++||.+. ....+..+ .
T Consensus 151 ~htD-YVR~g~~~--~~~~hivvtGsYDg~vrl~DtR~--------------------------------~~~~v~el-n 194 (487)
T KOG0310|consen 151 GHTD-YVRCGDIS--PANDHIVVTGSYDGKVRLWDTRS--------------------------------LTSRVVEL-N 194 (487)
T ss_pred CCcc-eeEeeccc--cCCCeEEEecCCCceEEEEEecc--------------------------------CCceeEEe-c
Confidence 6654 34455443 34567999999999999999981 12444455 5
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEE
Q 000654 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1371)
Q Consensus 255 H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~V 332 (1371)
|..+|..+.+.|.|..+|+++.. .|++||+.++.+. + .....|...|+|+++. +..|++|+-|+.++|
T Consensus 195 hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~ql-------l--~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQL-------L--TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKV 264 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCcee-------h--hhhhcccceEEEEEeecCCceEeecccccceEE
Confidence 99999999999999999999876 8999999976541 1 1344599999999997 589999999999999
Q ss_pred EeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 333 Wd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
||+ +-+.+..+.... +|.+++.+|++..++.|..||.+.+-+.
T Consensus 265 fd~t~~Kvv~s~~~~~--pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 265 FDTTNYKVVHSWKYPG--PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEccceEEEEeeeccc--ceeeEEecCCCceEEEecccceeeeehh
Confidence 998 667777776544 6999999999999999999998877644
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=4.6e-22 Score=218.74 Aligned_cols=279 Identities=17% Similarity=0.272 Sum_probs=222.3
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe--EEEEEEeecCccEEEEEeeccccccCCCCcceeeEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~--~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la 92 (1371)
|.+.|..+.|- ++ ...|++|. |..|++|+...++ .+.++.+-.+ .|..+.|. +++. ..|+
T Consensus 174 h~gev~~v~~l--~~----sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g-~it~~d~d-------~~~~---~~iA 236 (459)
T KOG0288|consen 174 HEGEVHDVEFL--RN----SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG-NITSIDFD-------SDNK---HVIA 236 (459)
T ss_pred cccccceeEEc--cC----cchhhhcchhhhhhhhhcccchhhhhhhhhccCC-Ccceeeec-------CCCc---eEEe
Confidence 78889999998 76 45666655 8999999987665 5566665444 79999998 7774 6667
Q ss_pred EECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEE
Q 000654 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1371)
Q Consensus 93 ~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~ 172 (1371)
++.|+.+++|++.. .+..++|.||++.|+++.|.. ....+++|+.|.+|++||+.+..+..+
T Consensus 237 as~d~~~r~Wnvd~---------------~r~~~TLsGHtdkVt~ak~~~---~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDS---------------LRLRHTLSGHTDKVTAAKFKL---SHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred ecCCCceeeeeccc---------------hhhhhhhcccccceeeehhhc---cccceeeccccchhhhhhhhhhheecc
Confidence 77799999999985 667889999999999999987 555599999999999999999888877
Q ss_pred EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEE
Q 000654 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1371)
Q Consensus 173 l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1371)
+.....|. .+.. ....+++|..|+.|++||.+ ........
T Consensus 299 ~l~~S~cn--DI~~-----~~~~~~SgH~DkkvRfwD~R---------------------------------s~~~~~sv 338 (459)
T KOG0288|consen 299 VLPGSQCN--DIVC-----SISDVISGHFDKKVRFWDIR---------------------------------SADKTRSV 338 (459)
T ss_pred cccccccc--ceEe-----cceeeeecccccceEEEecc---------------------------------CCceeeEe
Confidence 66554432 2222 14578899999999999998 44555566
Q ss_pred ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeE
Q 000654 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1371)
Q Consensus 253 ~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I 330 (1371)
..+. .|+++..++++..|.+++.|.++.+.|+++... ..++. ..-+.-....+.+.|+ +.|+++|+.||.|
T Consensus 339 ~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-----~~~~s-A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv 411 (459)
T KOG0288|consen 339 PLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-----RQTFS-AEGFKCASDWTRVVFSPDGSYVAAGSADGSV 411 (459)
T ss_pred ecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE-----EEEee-ccccccccccceeEECCCCceeeeccCCCcE
Confidence 6554 999999999999999999999999999998654 22221 1111122337788898 5899999999999
Q ss_pred EEEeC-CCcEEEEEeeccCc-CEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000654 331 RVWGS-DGKQLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1371)
Q Consensus 331 ~VWd~-~g~~l~~l~~h~~~-~V~sl~~spdg~~L~Tgg~Dg~I~lwd 376 (1371)
+||++ +|++...+...... +|++++|+|.|..|++++.++.+.+|.
T Consensus 412 ~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 412 YIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999 88888887765542 599999999999999999999999993
No 73
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.3e-21 Score=225.40 Aligned_cols=269 Identities=18% Similarity=0.297 Sum_probs=211.3
Q ss_pred CCEEEEEe-CCcEEEEECCCC------eEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccC
Q 000654 35 LPFLLAGS-GSQVLLYDLEAG------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFE 107 (1371)
Q Consensus 35 ~~llaaG~-dg~I~Iwd~~sg------~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~ 107 (1371)
++||++|+ ||.|++|+...- ..+++++.|.+ -|..|+.. -+|+ .+|.++.|-+|++|+...+
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsD-WVNDiiL~-------~~~~---tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSD-WVNDIILC-------GNGK---TLISASSDTTVKVWNAHKD 105 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHh-HHhhHHhh-------cCCC---ceEEecCCceEEEeecccC
Confidence 68888877 899999997532 13566666655 67777665 5553 5777777999999998753
Q ss_pred CCCCCCCCCccceeeeeeeeccCCCCcEEEEEE-EeecCCCcEEEEEECCCcEEEEECCCCeE--EEE--------EecC
Q 000654 108 LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF-LKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILE--------VHSP 176 (1371)
Q Consensus 108 ~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~f-sp~~~dg~~Latgs~Dg~I~vWd~~~~~~--~~~--------l~~~ 176 (1371)
. -.++.++..|.+.|.|+++ .+ +..++|+||-|+.|.+||+.++.. +.. +...
T Consensus 106 ~-------------~~c~stir~H~DYVkcla~~ak---~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 106 N-------------TFCMSTIRTHKDYVKCLAYIAK---NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred c-------------chhHhhhhcccchheeeeeccc---CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 2 2567788899999999999 55 888999999999999999997732 222 2224
Q ss_pred CcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEeccc
Q 000654 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1371)
Q Consensus 177 ~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~ 256 (1371)
.+..+|+++. ++.+..+++|+..+.|++||.+ +.+.+..+.||+
T Consensus 170 ~k~siYSLA~---N~t~t~ivsGgtek~lr~wDpr---------------------------------t~~kimkLrGHT 213 (735)
T KOG0308|consen 170 PKDSIYSLAM---NQTGTIIVSGGTEKDLRLWDPR---------------------------------TCKKIMKLRGHT 213 (735)
T ss_pred Cccceeeeec---CCcceEEEecCcccceEEeccc---------------------------------cccceeeeeccc
Confidence 4566889877 7778899999999999999999 677788889999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEEEEEeCCCeEEEEe
Q 000654 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWG 334 (1371)
Q Consensus 257 ~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~I~VWd 334 (1371)
..|..+..++||..++|+|.||+|++||+...++ + .++..|...||++..++ .++++|+.||.|..=|
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-----l-----~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC-----L-----ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeeccccce-----e-----eeEEeccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence 9999999999999999999999999999998776 3 38889999999999985 6899999999999989
Q ss_pred C-C-CcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 335 S-D-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 335 ~-~-g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
+ + .+....++. .. +|..+..+.+.+-+-.+..|+.|+-|...
T Consensus 284 l~n~~~~tlick~-da-Pv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 284 LRNPAKSTLICKE-DA-PVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred cCCchhheEeecC-CC-chhhhhhccccCCceeeeccccceecCCc
Confidence 8 3 222222322 12 56677776444434556689999999874
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1e-20 Score=221.87 Aligned_cols=266 Identities=15% Similarity=0.223 Sum_probs=218.2
Q ss_pred CCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE-CCCeEEEEEeccCCCC
Q 000654 32 LSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSP 110 (1371)
Q Consensus 32 ~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~-gd~sV~vwdl~~~~~~ 110 (1371)
+++...||.|.+..|.+|+..+++........ ...|+++.|+ ++| ..|+++ .+|.|.|||...
T Consensus 185 Wss~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws-------~~G----~~LavG~~~g~v~iwD~~~---- 248 (484)
T KOG0305|consen 185 WSSANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWS-------PDG----SHLAVGTSDGTVQIWDVKE---- 248 (484)
T ss_pred cccCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEEC-------CCC----CEEEEeecCCeEEEEehhh----
Confidence 45568999999999999999999865555443 4589999999 998 455554 589999999975
Q ss_pred CCCCCCccceeeeeeeeccC-CCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeecc
Q 000654 111 NSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGD 189 (1371)
Q Consensus 111 ~~~~~~~~~v~~~~~~~l~g-h~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~ 189 (1371)
.+.+..+.+ |...|-+++|.. ..+.+|+.|+.|..+|+...+.......+++..+..+.+
T Consensus 249 -----------~k~~~~~~~~h~~rvg~laW~~-----~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw--- 309 (484)
T KOG0305|consen 249 -----------QKKTRTLRGSHASRVGSLAWNS-----SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW--- 309 (484)
T ss_pred -----------ccccccccCCcCceeEEEeccC-----ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE---
Confidence 345566667 999999999965 779999999999999998776654422334445556666
Q ss_pred CCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcC-CC
Q 000654 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CG 268 (1371)
Q Consensus 190 s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~sp-dg 268 (1371)
++|+.++|+|+.|+.+.|||.. ...+...+..|.+.|.+++|+| ..
T Consensus 310 s~d~~~lASGgnDN~~~Iwd~~---------------------------------~~~p~~~~~~H~aAVKA~awcP~q~ 356 (484)
T KOG0305|consen 310 SPDGNQLASGGNDNVVFIWDGL---------------------------------SPEPKFTFTEHTAAVKALAWCPWQS 356 (484)
T ss_pred CCCCCeeccCCCccceEeccCC---------------------------------CccccEEEeccceeeeEeeeCCCcc
Confidence 8899999999999999999996 5667788999999999999999 56
Q ss_pred CEEEEE--eCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCC--EEEEE--eCCCeEEEEeC-CCcEEE
Q 000654 269 SKLVSV--SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS--FIITA--GEDCTCRVWGS-DGKQLK 341 (1371)
Q Consensus 269 ~~LaS~--s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~--~L~Sg--s~Dg~I~VWd~-~g~~l~ 341 (1371)
..||+| +.|+.|++||..++.. + ....-...|.++.|++. -|+++ ..+..|.||++ +-+.+.
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~g~~-----i------~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~ 425 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNTGAR-----I------DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA 425 (484)
T ss_pred CceEEcCCCcccEEEEEEcCCCcE-----e------cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee
Confidence 788886 4699999999998766 2 33344678999999953 35554 45678999999 888899
Q ss_pred EEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 342 MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 342 ~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
.+.+|..+ |..++++|||..+++|+.|.++++|++
T Consensus 426 ~l~gH~~R-Vl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 426 ELLGHTSR-VLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred eecCCcce-eEEEEECCCCCEEEEecccCcEEeccc
Confidence 99999995 999999999999999999999999998
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=5.7e-21 Score=199.38 Aligned_cols=279 Identities=15% Similarity=0.177 Sum_probs=218.4
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|..|++-|.++ .+ |.||+++. |.+..||=...|+.+.++.+|.+ .|+++.+. -+.+ .++..+
T Consensus 9 HERplTqiKyN--~e----GDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did-------~~s~---~liTGS 71 (327)
T KOG0643|consen 9 HERPLTQIKYN--RE----GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDID-------WDSK---HLITGS 71 (327)
T ss_pred CccccceEEec--CC----CcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEec-------CCcc---eeeecc
Confidence 88999999999 77 78999888 89999999889999999999988 89999998 5541 455555
Q ss_pred CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC-----CCcEEEEECC----
Q 000654 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSIRVWDIS---- 165 (1371)
Q Consensus 95 gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~-----Dg~I~vWd~~---- 165 (1371)
.|.++++||+.+ ++.+..++ ...+|..+.|++ +|++++.... .+.|.++|+.
T Consensus 72 AD~t~kLWDv~t---------------Gk~la~~k-~~~~Vk~~~F~~---~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 72 ADQTAKLWDVET---------------GKQLATWK-TNSPVKRVDFSF---GGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred ccceeEEEEcCC---------------CcEEEEee-cCCeeEEEeecc---CCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 699999999997 44555554 457899999999 8887765543 3568899987
Q ss_pred ---CCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccc
Q 000654 166 ---NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1371)
Q Consensus 166 ---~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~ 242 (1371)
...+..++..+...+ .++-| ++-+..|++|..+|.|.+||.++
T Consensus 133 ~~~s~ep~~kI~t~~ski-t~a~W---g~l~~~ii~Ghe~G~is~~da~~------------------------------ 178 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSKI-TSALW---GPLGETIIAGHEDGSISIYDART------------------------------ 178 (327)
T ss_pred hhcccCceEEecCCccce-eeeee---cccCCEEEEecCCCcEEEEEccc------------------------------
Confidence 344567777776443 33333 77899999999999999999982
Q ss_pred ccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CE
Q 000654 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SF 320 (1371)
Q Consensus 243 ~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~ 320 (1371)
..+.+.....|+..|+.+.+++|..+++|+|.|.+.++||+.+-.. + ..+.-..+|.+.+++| .+
T Consensus 179 --g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v--------~---Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 179 --GKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV--------L---KTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred --CceeeechhhhccccccccccCCcceEEecccCccceeeeccceee--------E---EEeeecccccceecccccce
Confidence 2344555567999999999999999999999999999999988544 2 3445567899999985 44
Q ss_pred EEEE-eCCCe-------------EEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 321 IITA-GEDCT-------------CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 321 L~Sg-s~Dg~-------------I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
++.| +.+.. .+.|++ -.+.+..+++|-+ +|.+++|+|+|+..++||.||.||++...
T Consensus 246 VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 246 VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred EEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCCCcccccCCCCceEEEEEec
Confidence 4444 44321 122222 2245678889999 89999999999999999999999999774
No 76
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=6.6e-21 Score=214.02 Aligned_cols=309 Identities=14% Similarity=0.211 Sum_probs=213.3
Q ss_pred eeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe----EEEEEecCCcceEEEEEeeccCCCCcEE
Q 000654 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNLEALRI 196 (1371)
Q Consensus 121 ~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~----~~~~l~~~~~~~v~s~~~~~~s~d~~~L 196 (1371)
-......+++|+..|.++++.| .|..|++|+.|.+|++||+.... ..+.+...+...+.++.| ++.+..|
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y---s~Tg~~i 229 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY---SVTGDQI 229 (641)
T ss_pred CccceEeccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeee---cCCCCeE
Confidence 3456677889999999999999 99999999999999999996532 244555556666778877 7888888
Q ss_pred EEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC-CEEEEEe
Q 000654 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVS 275 (1371)
Q Consensus 197 asgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg-~~LaS~s 275 (1371)
++.+...+.+|+|-...++.- ......-..-+...+||...+++..|+|+. ..++|++
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e---------------------~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s 288 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVE---------------------FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS 288 (641)
T ss_pred EEEecCcceeEEccCCceeee---------------------eeccchhhhhhhccCCceeeeeccccccCcccceEEec
Confidence 888888999999977211100 000000111234567999999999999965 5799999
Q ss_pred CCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeCCC---cEEEE-EeeccC-
Q 000654 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG---KQLKM-IKEHIG- 348 (1371)
Q Consensus 276 ~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~g---~~l~~-l~~h~~- 348 (1371)
.|+++||||+...+.. .+.+++....+..-.++.|+|+ +++||+|+.||.|.+|+..+ .+... -..|..
T Consensus 289 ~DgtlRiWdv~~~k~q----~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQ----LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred CCCcEEEEecCCchhh----eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC
Confidence 9999999999886542 4444433334555678999998 68899999999999999722 22222 234543
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEEcCC--CCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEE
Q 000654 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA--FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1371)
Q Consensus 349 ~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~--~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~la 426 (1371)
..|+||.||+||++|++-|.|+++++||++. +.+....+-. ...+-+.++
T Consensus 365 ~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~----------------------------t~~~~tdc~ 416 (641)
T KOG0772|consen 365 QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP----------------------------TPFPGTDCC 416 (641)
T ss_pred CceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC----------------------------ccCCCCccc
Confidence 2599999999999999999999999999953 2222211111 112346788
Q ss_pred EecCCcEEEEEc-------CCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEE
Q 000654 427 LTSEDTLYIATN-------HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (1371)
Q Consensus 427 fs~d~~llv~t~-------~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iw 499 (1371)
|+|+.++++++. .|.+++ ++..+ ...+....- ....++.+.+. +.-+.|++|+.||.+++|
T Consensus 417 FSPd~kli~TGtS~~~~~~~g~L~f---~d~~t--~d~v~ki~i-~~aSvv~~~Wh------pkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 417 FSPDDKLILTGTSAPNGMTAGTLFF---FDRMT--LDTVYKIDI-STASVVRCLWH------PKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cCCCceEEEecccccCCCCCceEEE---Eeccc--eeeEEEecC-CCceEEEEeec------chhhheeeecCCCceEEE
Confidence 999998888752 344443 33322 223333321 13333444443 455779999999999986
Q ss_pred E
Q 000654 500 R 500 (1371)
Q Consensus 500 d 500 (1371)
-
T Consensus 485 Y 485 (641)
T KOG0772|consen 485 Y 485 (641)
T ss_pred E
Confidence 4
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=208.37 Aligned_cols=279 Identities=16% Similarity=0.268 Sum_probs=229.9
Q ss_pred CcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECC
Q 000654 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1371)
Q Consensus 18 ~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd 96 (1371)
..++++... |. ...+++|. |.++.+||..+++.+..+++|.. .|..+.++ |+. +..+....|
T Consensus 220 pgi~ald~~--~s----~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k-ki~~v~~~-------~~~---~~v~~aSad 282 (506)
T KOG0289|consen 220 PGITALDII--PS----SSKILTGGEDKTAVLFDKPSNQILATLKGHTK-KITSVKFH-------KDL---DTVITASAD 282 (506)
T ss_pred CCeeEEeec--CC----CCcceecCCCCceEEEecchhhhhhhccCcce-EEEEEEec-------cch---hheeecCCc
Confidence 457888887 64 46788877 67999999999999999999876 89999999 765 244445559
Q ss_pred CeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecC
Q 000654 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1371)
Q Consensus 97 ~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~ 176 (1371)
..|+||...... .......|..+|+.+..+| .|.||++++.|++..+.|+.++..+......
T Consensus 283 ~~i~vws~~~~s---------------~~~~~~~h~~~V~~ls~h~---tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 283 EIIRVWSVPLSS---------------EPTSSRPHEEPVTGLSLHP---TGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred ceEEeecccccc---------------Cccccccccccceeeeecc---CCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 999999986532 3345668999999999999 9999999999999999999999988777653
Q ss_pred -CcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecc
Q 000654 177 -ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1371)
Q Consensus 177 -~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1371)
....+.+..| .|||.++.+|+.|+.|+|||+. .......|.+|
T Consensus 345 ~s~v~~ts~~f---HpDgLifgtgt~d~~vkiwdlk---------------------------------s~~~~a~Fpgh 388 (506)
T KOG0289|consen 345 TSDVEYTSAAF---HPDGLIFGTGTPDGVVKIWDLK---------------------------------SQTNVAKFPGH 388 (506)
T ss_pred cccceeEEeeE---cCCceEEeccCCCceEEEEEcC---------------------------------CccccccCCCC
Confidence 3445667777 6899999999999999999998 45567889999
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEE
Q 000654 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVW 333 (1371)
Q Consensus 256 ~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VW 333 (1371)
+++|..|+|+.+|-+|+++.+|+.|++||++..+. .+. ........+.++.|+ +.+|+.++.|=.|.++
T Consensus 389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-----~kt----~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-----FKT----IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred CCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-----cce----eeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 99999999999999999999999999999998654 221 122233478889997 7999999888777777
Q ss_pred eC---CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 334 GS---DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 334 d~---~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
+- +-.++..+..|.+ ..+++.|....++++++|.|..++++.+
T Consensus 460 ~k~~k~W~~~~~~~~~sg-~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 460 KKKTKSWTEIKELADHSG-LSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccccceeeehhhhccc-ccceeeecccceEEeeccchhheEEeec
Confidence 74 3457778888887 5899999999999999999999998764
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=4e-20 Score=193.14 Aligned_cols=299 Identities=13% Similarity=0.191 Sum_probs=224.9
Q ss_pred EEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEE
Q 000654 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1371)
Q Consensus 60 ~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~ 139 (1371)
+++|+. +++.|.++ -+| +.++.++-|.+..||--.. ++.+.++.||++.|++++
T Consensus 6 l~GHER-plTqiKyN-------~eG---DLlFscaKD~~~~vw~s~n---------------GerlGty~GHtGavW~~D 59 (327)
T KOG0643|consen 6 LQGHER-PLTQIKYN-------REG---DLLFSCAKDSTPTVWYSLN---------------GERLGTYDGHTGAVWCCD 59 (327)
T ss_pred cccCcc-ccceEEec-------CCC---cEEEEecCCCCceEEEecC---------------CceeeeecCCCceEEEEE
Confidence 456777 89999999 777 3555556699999998654 678899999999999999
Q ss_pred EEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeC-----CCeEEEEEcccCC
Q 000654 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-----YNEIIVWKVDWEH 214 (1371)
Q Consensus 140 fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~-----dg~I~vWd~~~~~ 214 (1371)
... +...|+||+.|+++++||+++|+++..++.+. .+..+.| +.++++++..+. .+.|.++|++...
T Consensus 60 id~---~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~--~Vk~~~F---~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 60 IDW---DSKHLITGSADQTAKLWDVETGKQLATWKTNS--PVKRVDF---SFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ecC---CcceeeeccccceeEEEEcCCCcEEEEeecCC--eeEEEee---ccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 988 88999999999999999999999999887654 3455555 777887777653 4679999987111
Q ss_pred ccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCC
Q 000654 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (1371)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~ 294 (1371)
. ......+...+..++..++.+-|.|-+++|++|.+||.|.+||++++...
T Consensus 132 ~--------------------------~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~--- 182 (327)
T KOG0643|consen 132 S--------------------------DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL--- 182 (327)
T ss_pred h--------------------------hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee---
Confidence 0 00134567788889999999999999999999999999999999997541
Q ss_pred CceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCc
Q 000654 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1371)
Q Consensus 295 ~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~ 371 (1371)
++ ...-|...|++++++ ..+++|++.|.+-++||. +-+.++++.... +|.+.+++|....++.||.-..
T Consensus 183 -v~-----s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 183 -VD-----SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred -ee-----chhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc--cccceecccccceEEecCCcee
Confidence 11 456788899999998 479999999999999999 778888887554 6999999998777777664322
Q ss_pred EEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEc-CCcEEE
Q 000654 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HGYLYH 444 (1371)
Q Consensus 372 I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~-~G~i~~ 444 (1371)
--+=....+ ...++ .+.|... ..+.++...+|.++|++++|+|+|+.+++++ +|++..
T Consensus 255 ~dVTTT~~r-~GKFE-----------ArFyh~i---~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 255 MDVTTTSTR-AGKFE-----------ARFYHLI---FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred eeeeeeccc-ccchh-----------hhHHHHH---HHHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence 222111100 00000 0011100 1245666789999999999999999888764 666543
No 79
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=1e-20 Score=219.93 Aligned_cols=284 Identities=20% Similarity=0.343 Sum_probs=225.7
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEE--EEEecCCcceEEEEEeeccCCCCcEEEEE
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~--~~l~~~~~~~v~s~~~~~~s~d~~~Lasg 199 (1371)
.++.+.+.+|...|..+++.+ +..+++++.|+++++|+-..++.+ ..+..|.+.+..++++.. .++-.+++|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~----~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g 77 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD----GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVG 77 (745)
T ss_pred ceeEEEeccCccchheeEecC----CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEee
Confidence 456778899999999999874 457899999999999998665554 345677777777777754 355679999
Q ss_pred eCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCc
Q 000654 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1371)
Q Consensus 200 s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~ 279 (1371)
+.|..|.+|... ...++..+.||+..|.++....++. ++|||.|.+
T Consensus 78 ~~D~~i~v~~~~---------------------------------~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T 123 (745)
T KOG0301|consen 78 GMDTTIIVFKLS---------------------------------QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST 123 (745)
T ss_pred cccceEEEEecC---------------------------------CCCchhhhhccccceeeeecCCcCc-eEecccccc
Confidence 999999999988 6778899999999999999888887 999999999
Q ss_pred EEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-CCEEEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcC
Q 000654 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358 (1371)
Q Consensus 280 VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~sp 358 (1371)
+++|....... .+.+|+..||+++.- .+.++||+.|.+|++|.- ++.+++|.+|.. .|+++++-+
T Consensus 124 akvW~~~~l~~------------~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD-~VRgL~vl~ 189 (745)
T KOG0301|consen 124 AKVWRIGELVY------------SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTD-CVRGLAVLD 189 (745)
T ss_pred eEEecchhhhc------------ccCCcchheeeeeecCCCcEEeccCcceeeeccC-Cchhhhhccchh-heeeeEEec
Confidence 99999876433 789999999999886 579999999999999995 889999999998 799999987
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEE-
Q 000654 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT- 437 (1371)
Q Consensus 359 dg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t- 437 (1371)
++ .+++++.||.|++|++.+.++.... +|...|.++....++.+++++
T Consensus 190 ~~-~flScsNDg~Ir~w~~~ge~l~~~~------------------------------ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 190 DS-HFLSCSNDGSIRLWDLDGEVLLEMH------------------------------GHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred CC-CeEeecCCceEEEEeccCceeeeee------------------------------ccceEEEEEEecCCCCeEEEec
Confidence 74 4789999999999999876655444 455678888866655565555
Q ss_pred cCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCc
Q 000654 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1371)
Q Consensus 438 ~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~ 505 (1371)
.++.+. +|... ...+.++.+ ...+++..++.+ .-+++|++||.|+||.....+
T Consensus 239 EDrtlr---iW~~~--e~~q~I~lP-ttsiWsa~~L~N---------gDIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 239 EDRTLR---IWKKD--ECVQVITLP-TTSIWSAKVLLN---------GDIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred CCceEE---EeecC--ceEEEEecC-ccceEEEEEeeC---------CCEEEeccCceEEEEEecccc
Confidence 566665 44443 233444433 456777766543 348999999999999887443
No 80
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.7e-20 Score=224.49 Aligned_cols=315 Identities=17% Similarity=0.233 Sum_probs=201.8
Q ss_pred eeeecc-CCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCC
Q 000654 124 LVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1371)
Q Consensus 124 ~~~~l~-gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~d 202 (1371)
..+.+. .|.+.|+++.|++ ||+|||+||.|+.|+||.+........-.....++.+.+. ..+..-.+....
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~-----~~s~~~p~~s~~ 329 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYN-----ANSQIEPSTSSE 329 (712)
T ss_pred EeeccccccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhh-----hccccCcccccc
Confidence 344556 8999999999999 9999999999999999998764431111111111111110 000000000000
Q ss_pred CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee--cccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcE
Q 000654 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL--QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1371)
Q Consensus 203 g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i--~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~V 280 (1371)
+.+. .... ............+ ....-..++++.+.||.+.|..|.|+.+ .+|+|+|.|.+|
T Consensus 330 ~~~~----------~~~s------~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTV 392 (712)
T KOG0283|consen 330 EKIS----------SRTS------SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTV 392 (712)
T ss_pred cccc----------cccc------ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccE
Confidence 0000 0000 0000000000111 1111246678899999999999999876 589999999999
Q ss_pred EEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEc
Q 000654 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357 (1371)
Q Consensus 281 riWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~s 357 (1371)
|||++....+ ...+.|...|+|++|+ ++++++|+-||.||||++....+.....-.. -|++++|.
T Consensus 393 RLWh~~~~~C-----------L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy~ 460 (712)
T KOG0283|consen 393 RLWHPGRKEC-----------LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCYS 460 (712)
T ss_pred EeecCCCcce-----------eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEec
Confidence 9999998776 2778999999999998 5899999999999999995555555444444 59999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEE
Q 000654 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1371)
Q Consensus 358 pdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t 437 (1371)
|||++.+.|..+|..++|+..+..++ .... +
T Consensus 461 PdGk~avIGt~~G~C~fY~t~~lk~~---------------------------------------~~~~--------I-- 491 (712)
T KOG0283|consen 461 PDGKGAVIGTFNGYCRFYDTEGLKLV---------------------------------------SDFH--------I-- 491 (712)
T ss_pred cCCceEEEEEeccEEEEEEccCCeEE---------------------------------------Eeee--------E--
Confidence 99999999999999999998542110 0000 0
Q ss_pred cCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeec
Q 000654 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517 (1371)
Q Consensus 438 ~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~ 517 (1371)
.+...+.. . ...|+.+.+.++ +...+++.+.|..|+|||..+..+..+.+- .
T Consensus 492 --------~~~~~Kk~--------~-~~rITG~Q~~p~-------~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG----~ 543 (712)
T KOG0283|consen 492 --------RLHNKKKK--------Q-GKRITGLQFFPG-------DPDEVLVTSNDSRIRIYDGRDKDLVHKFKG----F 543 (712)
T ss_pred --------eeccCccc--------c-CceeeeeEecCC-------CCCeEEEecCCCceEEEeccchhhhhhhcc----c
Confidence 01111110 1 114555555433 234677888899999999966555443221 1
Q ss_pred cCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCC
Q 000654 518 AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1371)
Q Consensus 518 ~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~ 555 (1371)
.....++. ..++.+|+++++++.|..|++|+....
T Consensus 544 ~n~~SQ~~---Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 544 RNTSSQIS---ASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCCccee---eeEccCCCEEEEeecCceEEEEeCCCC
Confidence 12222332 356679999999999999999998753
No 81
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=205.52 Aligned_cols=283 Identities=18% Similarity=0.242 Sum_probs=218.6
Q ss_pred CCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCC-------cceEEEEEeeccCCCCcEEEEEeCC
Q 000654 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE-------RCLLYSMKLWGDNLEALRIASGTIY 202 (1371)
Q Consensus 130 gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~-------~~~v~s~~~~~~s~d~~~Lasgs~d 202 (1371)
+....+-|..|+| ||++|++|+.||-|.+|+..+|+..+.++... ...+.++.| +.|...||+|+.|
T Consensus 211 g~KSh~EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F---SRDsEMlAsGsqD 284 (508)
T KOG0275|consen 211 GQKSHVECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF---SRDSEMLASGSQD 284 (508)
T ss_pred ccccchhheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee---cccHHHhhccCcC
Confidence 4456788999999 99999999999999999999998765554221 223455555 7889999999999
Q ss_pred CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe-cccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 000654 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1371)
Q Consensus 203 g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~-gH~~~I~~v~~spdg~~LaS~s~Dg~Vr 281 (1371)
|.|+||.+. ++.++.++. +|+..|+++.|+.|+..+++++.|.++|
T Consensus 285 GkIKvWri~---------------------------------tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvR 331 (508)
T KOG0275|consen 285 GKIKVWRIE---------------------------------TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVR 331 (508)
T ss_pred CcEEEEEEe---------------------------------cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEE
Confidence 999999999 677777776 8999999999999999999999999999
Q ss_pred EEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccC-cCEEEEEEc
Q 000654 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG-RGIWRCLYD 357 (1371)
Q Consensus 282 iWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~-~~V~sl~~s 357 (1371)
+.-+.+++. ++ .+.||...|+.+.|. +.++++++.||+|+||+. +++++.+++.... .+|.++-.-
T Consensus 332 iHGlKSGK~-----LK-----EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 332 IHGLKSGKC-----LK-----EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL 401 (508)
T ss_pred Eeccccchh-----HH-----HhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence 999999877 44 788999999999998 789999999999999999 8899988875432 368888877
Q ss_pred CCC-CEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcE-EE
Q 000654 358 SLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL-YI 435 (1371)
Q Consensus 358 pdg-~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~l-lv 435 (1371)
|.. ..++.+...+++.+.++.|+.++++.... ...+..-+.+.+|.|.+ ++
T Consensus 402 PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk---------------------------REgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK---------------------------REGGDFINAILSPKGEWIYC 454 (508)
T ss_pred CCCCceEEEEcCCCeEEEEeccceEEeeeccCC---------------------------ccCCceEEEEecCCCcEEEE
Confidence 754 47888999999999999887766554221 11233455667888865 45
Q ss_pred EEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEE
Q 000654 436 ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1371)
Q Consensus 436 ~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwd 500 (1371)
.+.++.+|.+.+.... .+..+..++...| .+.- -|..+++|+-++||.+++|.
T Consensus 455 igED~vlYCF~~~sG~---LE~tl~VhEkdvI-Gl~H--------HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 455 IGEDGVLYCFSVLSGK---LERTLPVHEKDVI-GLTH--------HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EccCcEEEEEEeecCc---eeeeeeccccccc-cccc--------CcccchhhhhcccchhhhcC
Confidence 5567777655544332 2333444433322 2222 36678999999999999995
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.86 E-value=1.5e-20 Score=211.18 Aligned_cols=296 Identities=18% Similarity=0.220 Sum_probs=217.8
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC----eEEEEEEeecCccEEEEEeeccccccCCCCcceeeE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg----~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~ 90 (1371)
|..-|+++++. |. |-.+++|+ |-+|++||...- +..+.+...+...|..++|+ +.|. .+
T Consensus 166 gtk~Vsal~~D--p~----GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys-------~Tg~---~i 229 (641)
T KOG0772|consen 166 GTKIVSALAVD--PS----GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS-------VTGD---QI 229 (641)
T ss_pred CceEEEEeeec--CC----CceeeeccccceEEEEecccccccchhhhccCcccccccceeeec-------CCCC---eE
Confidence 45669999999 87 77888888 999999998632 22233333445679999999 7773 88
Q ss_pred EEEECCCeEEEEEeccCC----CCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCC
Q 000654 91 VALFGEKRVKLFELNFEL----SPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1371)
Q Consensus 91 la~~gd~sV~vwdl~~~~----~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~ 166 (1371)
|+++|....+|+|-+--. +.+.+| ..-+..-+||...++|.+|+|. +...++|++.|+++|+||+.+
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQY-------I~Dm~nTKGHia~lt~g~whP~--~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQY-------IRDMYNTKGHIAELTCGCWHPD--NKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchh-------hhhhhccCCceeeeeccccccC--cccceEEecCCCcEEEEecCC
Confidence 999999999999975211 111111 2334566799999999999992 446788999999999999987
Q ss_pred CeEEE-EEe----cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000654 167 SSIIL-EVH----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1371)
Q Consensus 167 ~~~~~-~l~----~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1371)
.+... .++ ...+..+.+.+| ++++.++|+|..||.|.+|+...-
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~---nrdg~~iAagc~DGSIQ~W~~~~~---------------------------- 349 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAW---NRDGKLIAAGCLDGSIQIWDKGSR---------------------------- 349 (641)
T ss_pred chhheeEEeeccCCCcccCceeeec---CCCcchhhhcccCCceeeeecCCc----------------------------
Confidence 54322 222 333444445444 899999999999999999997611
Q ss_pred cccceeeEEEEecccC--CEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC-
Q 000654 242 QQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD- 318 (1371)
Q Consensus 242 ~~~~~~~~~~l~gH~~--~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~- 318 (1371)
........-.+|.. .|++|.||+||++|+|-+.|.++++||++..+.+ +. ...-......-+.++|+|
T Consensus 350 --~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp----L~---~~tgL~t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 350 --TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP----LN---VRTGLPTPFPGTDCCFSPD 420 (641)
T ss_pred --ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc----hh---hhcCCCccCCCCccccCCC
Confidence 12223444567887 9999999999999999999999999999987552 11 011122233457889984
Q ss_pred -CEEEEEe------CCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 319 -SFIITAG------EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 319 -~~L~Sgs------~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
++|+||. ..|++.+||. +-..+..+..... .|..+.|+|.-+.|..|+.||+++++--
T Consensus 421 ~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a-Svv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 421 DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA-SVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc-eEEEEeecchhhheeeecCCCceEEEEC
Confidence 6778874 3567999998 6777777766666 6999999999999999999999998743
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.1e-20 Score=208.94 Aligned_cols=290 Identities=20% Similarity=0.279 Sum_probs=215.9
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeee
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~ 123 (1371)
+.++-|+-.+.-.+. + +.+.|..|+|+ |.. +.-+|+.+.-.+.||+... ..
T Consensus 9 ~e~~~w~~~~~~~~~--k--e~~~vssl~fs-------p~~---P~d~aVt~S~rvqly~~~~---------------~~ 59 (487)
T KOG0310|consen 9 PEIRYWRQETFPPVH--K--EHNSVSSLCFS-------PKH---PYDFAVTSSVRVQLYSSVT---------------RS 59 (487)
T ss_pred ccchhhhhhcccccc--c--ccCcceeEecC-------CCC---CCceEEecccEEEEEecch---------------hh
Confidence 455666654433222 1 23479999999 432 2578888889999999875 23
Q ss_pred eeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCC
Q 000654 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1371)
Q Consensus 124 ~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg 203 (1371)
...++....+.|.+++|-. ||.+||.|...|.|+|+|..+...+..+..+. ..+....|. ..++..+++|+.|+
T Consensus 60 ~~k~~srFk~~v~s~~fR~---DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~-apv~~~~f~--~~d~t~l~s~sDd~ 133 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRS---DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ-APVHVTKFS--PQDNTMLVSGSDDK 133 (487)
T ss_pred hhhhHHhhccceeEEEeec---CCeEEEccCCcCcEEEeccccHHHHHHHhhcc-CceeEEEec--ccCCeEEEecCCCc
Confidence 3445556778999999998 99999999999999999976644455554443 334555553 23567788899999
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC-CEEEEEeCCCcEEE
Q 000654 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARI 282 (1371)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg-~~LaS~s~Dg~Vri 282 (1371)
.+++||+. +......+.+|++.|.+.+|+|.. ..++|||.||.||+
T Consensus 134 v~k~~d~s---------------------------------~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 134 VVKYWDLS---------------------------------TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred eEEEEEcC---------------------------------CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 99999998 333466889999999999999965 58899999999999
Q ss_pred EEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcE-EEEEeeccCcCEEEEEEcC
Q 000654 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQ-LKMIKEHIGRGIWRCLYDS 358 (1371)
Q Consensus 283 Wdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~-l~~l~~h~~~~V~sl~~sp 358 (1371)
||.+..... ..-..|..+|-.+.+- +..+++|+. ..++|||+ .|.. +..+..|.. .|+|+++..
T Consensus 181 ~DtR~~~~~----------v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s 248 (487)
T KOG0310|consen 181 WDTRSLTSR----------VVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK-TVTCLRLAS 248 (487)
T ss_pred EEeccCCce----------eEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccc-eEEEEEeec
Confidence 999986331 2567899999999986 478888874 47999999 4544 444555777 699999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEE-EE
Q 000654 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-AT 437 (1371)
Q Consensus 359 dg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv-~t 437 (1371)
++..|++||-|+.+++||+.. ..-++++..| ++|-+++.+|+++.++ +.
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~-----------------~Kvv~s~~~~-------------~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTN-----------------YKVVHSWKYP-------------GPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred CCceEeecccccceEEEEccc-----------------eEEEEeeecc-------------cceeeEEecCCCceEEEec
Confidence 999999999999999999742 1123333333 4799999999886554 45
Q ss_pred cCCcEE
Q 000654 438 NHGYLY 443 (1371)
Q Consensus 438 ~~G~i~ 443 (1371)
++|-+.
T Consensus 299 snGlv~ 304 (487)
T KOG0310|consen 299 SNGLVS 304 (487)
T ss_pred ccceee
Confidence 666543
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.4e-19 Score=190.21 Aligned_cols=280 Identities=15% Similarity=0.206 Sum_probs=217.6
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
..+.|+++.|+ ++ |.+|++++ |.+|+|||+.+|+.++++..++- .|..++|. ...+ ..+.+.
T Consensus 13 ~~~~i~sl~fs--~~----G~~litss~dDsl~LYd~~~g~~~~ti~skky-G~~~~~Ft-------h~~~---~~i~sS 75 (311)
T KOG1446|consen 13 TNGKINSLDFS--DD----GLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-GVDLACFT-------HHSN---TVIHSS 75 (311)
T ss_pred CCCceeEEEec--CC----CCEEEEecCCCeEEEEEcCCCceeeEeecccc-cccEEEEe-------cCCc---eEEEcc
Confidence 45789999999 88 77887766 68999999999999999987554 68889987 3321 455555
Q ss_pred C--CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEE
Q 000654 95 G--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1371)
Q Consensus 95 g--d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~ 172 (1371)
. |.+||..++.+ -+.++.+.||.+.|.+++.+| -++.+++++.|++|++||++..++...
T Consensus 76 tk~d~tIryLsl~d---------------NkylRYF~GH~~~V~sL~~sP---~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHD---------------NKYLRYFPGHKKRVNSLSVSP---KDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred CCCCCceEEEEeec---------------CceEEEcCCCCceEEEEEecC---CCCeEEecccCCeEEeeEecCCCCceE
Confidence 4 78999999986 468899999999999999999 778999999999999999997777665
Q ss_pred EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEE
Q 000654 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1371)
Q Consensus 173 l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1371)
+....+.+ .+| +|+|.++|++...+.|++||++.-... ......+
T Consensus 138 l~~~~~pi---~Af---Dp~GLifA~~~~~~~IkLyD~Rs~dkg-----------------------------PF~tf~i 182 (311)
T KOG1446|consen 138 LNLSGRPI---AAF---DPEGLIFALANGSELIKLYDLRSFDKG-----------------------------PFTTFSI 182 (311)
T ss_pred EecCCCcc---eeE---CCCCcEEEEecCCCeEEEEEecccCCC-----------------------------CceeEcc
Confidence 55444332 223 789999999988889999999821111 1111112
Q ss_pred e-cccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCcc---EEEEEEc--CCEEEEEeC
Q 000654 253 V-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR---VWDCCLT--DSFIITAGE 326 (1371)
Q Consensus 253 ~-gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~---I~~l~~s--~~~L~Sgs~ 326 (1371)
. +-......|.|+|||++++.+...+.+.+.|.-++.. .. .+.++... -....|. ++++++|+.
T Consensus 183 ~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~-----~~-----tfs~~~~~~~~~~~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 183 TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV-----KS-----TFSGYPNAGNLPLSATFTPDSKFVLSGSD 252 (311)
T ss_pred CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE-----ee-----eEeeccCCCCcceeEEECCCCcEEEEecC
Confidence 1 4467789999999999999999999999999988765 22 44444332 2456776 589999999
Q ss_pred CCeEEEEeC-CCcEEEEEee-ccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 327 DCTCRVWGS-DGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 327 Dg~I~VWd~-~g~~l~~l~~-h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
||+|.+|++ +|..+..+.+ +.+ ++.++.|+|.-..++|+ +..+.+|-..
T Consensus 253 dg~i~vw~~~tg~~v~~~~~~~~~-~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 253 DGTIHVWNLETGKKVAVLRGPNGG-PVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred CCcEEEEEcCCCcEeeEecCCCCC-CccccccCCceeeeeec--CceEEEEecc
Confidence 999999999 8999999998 455 79999999976666665 5678888663
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.86 E-value=4e-21 Score=203.86 Aligned_cols=289 Identities=17% Similarity=0.226 Sum_probs=207.0
Q ss_pred CcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEeccc
Q 000654 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1371)
Q Consensus 177 ~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~ 256 (1371)
.+..+-+..| +||+.+|++|+.||-|-+|++.++++.... ..+....+.-+.
T Consensus 212 ~KSh~EcA~F---SPDgqyLvsgSvDGFiEVWny~~GKlrKDL-------------------------kYQAqd~fMMmd 263 (508)
T KOG0275|consen 212 QKSHVECARF---SPDGQYLVSGSVDGFIEVWNYTTGKLRKDL-------------------------KYQAQDNFMMMD 263 (508)
T ss_pred cccchhheee---CCCCceEeeccccceeeeehhccchhhhhh-------------------------hhhhhcceeecc
Confidence 3334445555 899999999999999999999855443210 111222344588
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEe
Q 000654 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (1371)
Q Consensus 257 ~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd 334 (1371)
.+|.|+.|+.|...||+|+.||.|++|.+.++.+ ++ ..-..|...|+++.|+ +..+++++.|.++||-.
T Consensus 264 ~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C-----lR----rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHG 334 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC-----LR----RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHG 334 (508)
T ss_pred cceEEEeecccHHHhhccCcCCcEEEEEEecchH-----HH----HhhhhhccCeeEEEEccCcchhhcccccceEEEec
Confidence 9999999999999999999999999999999887 44 2335899999999998 68999999999999999
Q ss_pred C-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC-CCCcccccCCCccccccCCccEEEeeecCCccce
Q 000654 335 S-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (1371)
Q Consensus 335 ~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~-~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~ 412 (1371)
+ +|++++.+++|.. -|+...|.+||..+++++.||+|++|+.. +.++.++.... .+
T Consensus 335 lKSGK~LKEfrGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~------~d--------------- 392 (508)
T KOG0275|consen 335 LKSGKCLKEFRGHSS-YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG------TD--------------- 392 (508)
T ss_pred cccchhHHHhcCccc-cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC------Cc---------------
Confidence 9 9999999999999 59999999999999999999999999994 46666665332 11
Q ss_pred eeccCCCccEEEEEEecCC--cEEEEEcCCcEEEEEeecCCCceeEEeEeec-CCccEEEEeecCCCCCCCCCCCCEEEE
Q 000654 413 RLTDSKSEYVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYPCGIDDWVAL 489 (1371)
Q Consensus 413 ~~~~~~~~~V~~lafs~d~--~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~-~~~~I~~ld~~~~~~~~s~~~~~lla~ 489 (1371)
.+|..+...|.+ .++++-....++.+++...-. +....+. ++....+..+ ++.+.++++
T Consensus 393 -------~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV---rsfsSGkREgGdFi~~~l--------SpkGewiYc 454 (508)
T KOG0275|consen 393 -------YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV---RSFSSGKREGGDFINAIL--------SPKGEWIYC 454 (508)
T ss_pred -------ccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE---eeeccCCccCCceEEEEe--------cCCCcEEEE
Confidence 223344444422 345554455555443322111 1111111 2333333333 477899999
Q ss_pred EeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEe
Q 000654 490 GDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQ 551 (1371)
Q Consensus 490 gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWd 551 (1371)
.++|+.++.|.+.++.+..... -++.-.++ +...|..+.|++-+.||.+++|.
T Consensus 455 igED~vlYCF~~~sG~LE~tl~-------VhEkdvIG--l~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 455 IGEDGVLYCFSVLSGKLERTLP-------VHEKDVIG--LTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EccCcEEEEEEeecCceeeeee-------cccccccc--cccCcccchhhhhcccchhhhcC
Confidence 9999999999998877553211 11222222 34567778899999999999995
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=4.6e-20 Score=214.53 Aligned_cols=280 Identities=15% Similarity=0.302 Sum_probs=223.3
Q ss_pred eEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCC
Q 000654 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1371)
Q Consensus 55 ~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~ 133 (1371)
++-+++.+|+. .|..+++. +. ..++..+ |+++++|+-..+. ......+.+|.+
T Consensus 5 ~ls~~l~gH~~-DVr~v~~~-------~~-----~~i~s~sRd~t~~vw~~~~~~-------------~l~~~~~~~~~g 58 (745)
T KOG0301|consen 5 KLSHELEGHKS-DVRAVAVT-------DG-----VCIISGSRDGTVKVWAKKGKQ-------------YLETHAFEGPKG 58 (745)
T ss_pred eeEEEeccCcc-chheeEec-------CC-----eEEeecCCCCceeeeeccCcc-------------cccceecccCcc
Confidence 34466777765 68888776 44 3455555 9999999976433 333456778889
Q ss_pred cEEE-EEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEccc
Q 000654 134 WVFD-VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1371)
Q Consensus 134 ~I~~-v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~ 212 (1371)
.|.. ++|.+ .++..|++|+.|.+|.+|...+...+..+.+|...+ .++.. ..++ .+++|+.|.++++|...
T Consensus 59 ~i~~~i~y~e--~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snV-C~ls~---~~~~-~~iSgSWD~TakvW~~~- 130 (745)
T KOG0301|consen 59 FIANSICYAE--SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNV-CSLSI---GEDG-TLISGSWDSTAKVWRIG- 130 (745)
T ss_pred eeeccceecc--ccCcceEeecccceEEEEecCCCCchhhhhccccce-eeeec---CCcC-ceEecccccceEEecch-
Confidence 8888 88886 366679999999999999999999999999887654 34442 2334 49999999999999875
Q ss_pred CCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccC
Q 000654 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1371)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~ 292 (1371)
+....+.||+.+|+++++-|++ .++|||.|.+|++|.-.+.
T Consensus 131 ----------------------------------~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~---- 171 (745)
T KOG0301|consen 131 ----------------------------------ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTL---- 171 (745)
T ss_pred ----------------------------------hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCch----
Confidence 2334488999999999999988 8899999999999987432
Q ss_pred CCCceeeeceEeecCCccEEEEEEcC-CEEEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCc
Q 000654 293 SDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1371)
Q Consensus 293 ~~~~~~~~~~~~~gh~~~I~~l~~s~-~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~ 371 (1371)
+ .++.||..-|..+++-+ ..+++++.||.|+.|+++|+.+..+.+|.. -|.+++...++..++++|.|++
T Consensus 172 ---l-----~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrt 242 (745)
T KOG0301|consen 172 ---L-----KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRT 242 (745)
T ss_pred ---h-----hhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccce-EEEEEEecCCCCeEEEecCCce
Confidence 2 28899999999999974 599999999999999999999999999999 5999998888899999999999
Q ss_pred EEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEe
Q 000654 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKL 447 (1371)
Q Consensus 372 I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l 447 (1371)
+++|+.. .+.+. +..|. -.|.++.+.++|.+++++++|.++.+..
T Consensus 243 lriW~~~-e~~q~------------------I~lPt------------tsiWsa~~L~NgDIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 243 LRIWKKD-ECVQV------------------ITLPT------------TSIWSAKVLLNGDIVVGGSDGRVRVFTV 287 (745)
T ss_pred EEEeecC-ceEEE------------------EecCc------------cceEEEEEeeCCCEEEeccCceEEEEEe
Confidence 9999974 22222 22222 2477788888999999999999886554
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=1.4e-19 Score=188.58 Aligned_cols=269 Identities=13% Similarity=0.151 Sum_probs=213.1
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEE--EeecCccEEEEEeeccccccCCCCcceeeEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPF--QVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~--~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la 92 (1371)
|.+.|..|+|+ -+ |..|++|+ |+++.+|+++-.+..... ++|.+ .|-.++|.+. .|| .+.+
T Consensus 19 ~~~~v~Sv~wn--~~----g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-svdql~w~~~----~~d-----~~at 82 (313)
T KOG1407|consen 19 HVQKVHSVAWN--CD----GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SVDQLCWDPK----HPD-----LFAT 82 (313)
T ss_pred hhhcceEEEEc--cc----CceeeecccCCceEEEEecchhhhhhhcccCCCc-chhhheeCCC----CCc-----ceEE
Confidence 78899999999 77 89999998 899999999877554443 34444 6888899833 243 6777
Q ss_pred EECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEE
Q 000654 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1371)
Q Consensus 93 ~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~ 172 (1371)
+++|++|++||+.. .++.+......+. .-+.|+| +|.+++.+..|..|.+.|..+.+....
T Consensus 83 as~dk~ir~wd~r~---------------~k~~~~i~~~~en-i~i~wsp---~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRS---------------GKCTARIETKGEN-INITWSP---DGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred ecCCceEEEEEecc---------------CcEEEEeeccCcc-eEEEEcC---CCCEEEEecCcccEEEEEecccceeeh
Confidence 78899999999986 3444444433333 4577899 999999999999999999988776654
Q ss_pred EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEE
Q 000654 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1371)
Q Consensus 173 l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1371)
.+.. ..+.-+.+ +.++.+++..+..|.|.|-.+. ..+++..+
T Consensus 144 ~~~~--~e~ne~~w---~~~nd~Fflt~GlG~v~ILsyp---------------------------------sLkpv~si 185 (313)
T KOG1407|consen 144 EQFK--FEVNEISW---NNSNDLFFLTNGLGCVEILSYP---------------------------------SLKPVQSI 185 (313)
T ss_pred hccc--ceeeeeee---cCCCCEEEEecCCceEEEEecc---------------------------------cccccccc
Confidence 4322 12223333 2345566665667999998887 67788999
Q ss_pred ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeE
Q 000654 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1371)
Q Consensus 253 ~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I 330 (1371)
++|.....||.|+|+|++||+|+.|..+.+||+..--+ . +.+..+.-+|..+.|+ +++||+|++|..|
T Consensus 186 ~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC-----~-----R~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC-----E-----RCISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred ccCCcceEEEEECCCCceEeeccccceeeccChhHhhh-----h-----eeeccccCceEEEEeccCcceeeccCccceE
Confidence 99999999999999999999999999999999987554 3 3777888899999998 8999999999999
Q ss_pred EEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECC
Q 000654 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1371)
Q Consensus 331 ~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~D 369 (1371)
-|=++ +|..+..++.. + +...++|+|...+||-++.|
T Consensus 256 DIA~vetGd~~~eI~~~-~-~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 256 DIAEVETGDRVWEIPCE-G-PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EeEecccCCeEEEeecc-C-CceeEEecCCCceeeEEecC
Confidence 99999 89988888644 4 58999999999999988875
No 88
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=6.3e-20 Score=194.93 Aligned_cols=275 Identities=20% Similarity=0.220 Sum_probs=205.9
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC-CeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~s-g~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~ 93 (1371)
..+.|.+|+|| |. ...++++|+ |++||+|+++. |..+.+.......+|.+++|+ .||+ ..++.
T Consensus 26 P~DsIS~l~FS--P~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws-------ddgs---kVf~g 90 (347)
T KOG0647|consen 26 PEDSISALAFS--PQ---ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS-------DDGS---KVFSG 90 (347)
T ss_pred cccchheeEec--cc---cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc-------cCCc---eEEee
Confidence 45679999999 83 256777888 99999999976 555544433334599999999 8883 45555
Q ss_pred ECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEE
Q 000654 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1371)
Q Consensus 94 ~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l 173 (1371)
+.|+++++||+..+. ......|.++|..+.|-+ ......|+||+.|++|+.||.+....+.++
T Consensus 91 ~~Dk~~k~wDL~S~Q----------------~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 91 GCDKQAKLWDLASGQ----------------VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred ccCCceEEEEccCCC----------------eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeee
Confidence 559999999998633 445568999999999987 123358999999999999999999999999
Q ss_pred ecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe
Q 000654 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1371)
Q Consensus 174 ~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1371)
.-|+++ |++.+ ...+++.++.++.|.+++++.... ..+.+ -.
T Consensus 154 ~LPeRv--Ya~Dv-----~~pm~vVata~r~i~vynL~n~~t-----------------------------e~k~~--~S 195 (347)
T KOG0647|consen 154 QLPERV--YAADV-----LYPMAVVATAERHIAVYNLENPPT-----------------------------EFKRI--ES 195 (347)
T ss_pred ecccee--eehhc-----cCceeEEEecCCcEEEEEcCCCcc-----------------------------hhhhh--cC
Confidence 988874 55432 345788899999999999972110 00000 00
Q ss_pred cccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCC---------ccEEEEEEcC--CEEE
Q 000654 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---------ARVWDCCLTD--SFII 322 (1371)
Q Consensus 254 gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~---------~~I~~l~~s~--~~L~ 322 (1371)
.-.-.+.+|+..+|....+.|+-.|.+.|..+..+..... +.+.-|. ..|.+++|++ ..|+
T Consensus 196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n--------FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv 267 (347)
T KOG0647|consen 196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN--------FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV 267 (347)
T ss_pred cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc--------eeEEEeccCCCCCCceEEecceEeecccceEE
Confidence 1223578899999988889999999999999887533111 2444443 2477889995 7899
Q ss_pred EEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEE-EECC
Q 000654 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT-AGFD 369 (1371)
Q Consensus 323 Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~T-gg~D 369 (1371)
|+|.||+..+||- ....++....|.. +|++++|+.+|.+++- .|.|
T Consensus 268 TaGsDGtf~FWDkdar~kLk~s~~~~q-pItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 268 TAGSDGTFSFWDKDARTKLKTSETHPQ-PITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred EecCCceEEEecchhhhhhhccCcCCC-ccceeEecCCCCEEEEEeecc
Confidence 9999999999998 4556777778888 7999999999997764 4444
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=9.4e-20 Score=203.53 Aligned_cols=291 Identities=13% Similarity=0.191 Sum_probs=219.3
Q ss_pred EEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCcc---ceeeeeeeec-cCCCC
Q 000654 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPET---CVNLSLVQSL-PRLSH 133 (1371)
Q Consensus 58 ~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~---~v~~~~~~~l-~gh~~ 133 (1371)
..+..|+. .|.+++++ ||++ +.+.++.+++|.=|++.++.... .+-|.. .........- ++|..
T Consensus 136 ~~~~~H~~-s~~~vals-------~d~~---~~fsask~g~i~kw~v~tgk~~~-~i~~~~ev~k~~~~~~k~~r~~h~k 203 (479)
T KOG0299|consen 136 RVIGKHQL-SVTSVALS-------PDDK---RVFSASKDGTILKWDVLTGKKDR-YIIERDEVLKSHGNPLKESRKGHVK 203 (479)
T ss_pred eeeccccC-cceEEEee-------cccc---ceeecCCCcceeeeehhcCcccc-cccccchhhhhccCCCCcccccccc
Confidence 34444555 89999999 8873 66666669999999998654110 111110 0011122222 48999
Q ss_pred cEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccC
Q 000654 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1371)
Q Consensus 134 ~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~ 213 (1371)
.|.+++.++ |+.+||+|+.|..|.||+..+.+.+..+.++.+ .+.+++| -.....+++++.|+.|++|+++
T Consensus 204 eil~~avS~---Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~-~V~~L~f---r~gt~~lys~s~Drsvkvw~~~-- 274 (479)
T KOG0299|consen 204 EILTLAVSS---DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG-AVSSLAF---RKGTSELYSASADRSVKVWSID-- 274 (479)
T ss_pred eeEEEEEcC---CCcEEEecCCCceEEEecCcccchhhccccccc-ceeeeee---ecCccceeeeecCCceEEEehh--
Confidence 999999999 999999999999999999999998888766654 5667777 3345679999999999999998
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCC
Q 000654 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1371)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~ 293 (1371)
....+.++.||.+.|.+|....-++.+-.|+.|+++++|++.....
T Consensus 275 -------------------------------~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--- 320 (479)
T KOG0299|consen 275 -------------------------------QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--- 320 (479)
T ss_pred -------------------------------HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce---
Confidence 5566778889999999999888777777777999999999965443
Q ss_pred CCceeeeceEeecCCccEEEEEEc-CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccC-----------cCEEEEEEcCCC
Q 000654 294 DSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG-----------RGIWRCLYDSLS 360 (1371)
Q Consensus 294 ~~~~~~~~~~~~gh~~~I~~l~~s-~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~-----------~~V~sl~~spdg 360 (1371)
..+.+|.+.+-|++|- ..+++||+.+|.|.+|++ ..+++.+.+..++ ..|++++..|..
T Consensus 321 --------lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s 392 (479)
T KOG0299|consen 321 --------LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS 392 (479)
T ss_pred --------eeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC
Confidence 3888999999999996 789999999999999999 7777766542111 158999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEE
Q 000654 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1371)
Q Consensus 361 ~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t 437 (1371)
.++++|+.+|.||+|.+....- .+ ..++++. -.+.|++++|+++|..++++
T Consensus 393 dL~asGS~~G~vrLW~i~~g~r-~i------------~~l~~ls-------------~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 393 DLLASGSWSGCVRLWKIEDGLR-AI------------NLLYSLS-------------LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ceEEecCCCCceEEEEecCCcc-cc------------ceeeecc-------------cccEEEEEEEccCCCEEEEe
Confidence 9999999999999999842110 00 0111111 23579999999999855544
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=1.2e-19 Score=222.06 Aligned_cols=295 Identities=15% Similarity=0.178 Sum_probs=228.4
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe---CCcEEEEECCC------------CeEEEEEEeecCccEEEEEeecccccc
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEA------------GTLIRPFQVFHGIRLHGISCNFINCTE 80 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~---dg~I~Iwd~~s------------g~~l~~~~~~~~~~I~~i~~s~~~~~~ 80 (1371)
+...|.++..+ || +..+|+|. |+.++||+.+. .+.+.+...|.+ .|.|+.|+
T Consensus 12 ~~~~IfSIdv~--pd----g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~-sv~CVR~S------ 78 (942)
T KOG0973|consen 12 NEKSIFSIDVH--PD----GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG-SVNCVRFS------ 78 (942)
T ss_pred CCeeEEEEEec--CC----ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC-ceeEEEEC------
Confidence 34569999999 99 88888877 58888999743 233455555655 89999999
Q ss_pred CCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCC----ccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC
Q 000654 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQP----ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1371)
Q Consensus 81 ~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~----~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~ 155 (1371)
||| ..||+++ |+.|.||...... ....|.- ...-.++....+.+|...|.+++|+| ++.+||+++.
T Consensus 79 -~dG----~~lAsGSDD~~v~iW~~~~~~-~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp---~~~~lvS~s~ 149 (942)
T KOG0973|consen 79 -PDG----SYLASGSDDRLVMIWERAEIG-SGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP---DDSLLVSVSL 149 (942)
T ss_pred -CCC----CeEeeccCcceEEEeeecccC-CcccccccccccccceeeEEEEEecCCCccceeccCC---CccEEEEecc
Confidence 999 6888887 6889999988411 1111111 12225788899999999999999999 9999999999
Q ss_pred CCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcc
Q 000654 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1371)
Q Consensus 156 Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1371)
|++|.+|+..+...+..+.+|.. .+-.+.| .|-|.++|+-+.|++|+||+..
T Consensus 150 DnsViiwn~~tF~~~~vl~~H~s-~VKGvs~---DP~Gky~ASqsdDrtikvwrt~------------------------ 201 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLRGHQS-LVKGVSW---DPIGKYFASQSDDRTLKVWRTS------------------------ 201 (942)
T ss_pred cceEEEEccccceeeeeeecccc-cccceEE---CCccCeeeeecCCceEEEEEcc------------------------
Confidence 99999999999988888877654 3445555 7899999999999999999976
Q ss_pred eeeecccccceeeEEEEecc------cCCEEEEEEcCCCCEEEEEe----CCCcEEEEEccCCcccCCCCceeeeceEee
Q 000654 236 CFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCGSKLVSVS----DDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1371)
Q Consensus 236 ~i~i~~~~~~~~~~~~l~gH------~~~I~~v~~spdg~~LaS~s----~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~ 305 (1371)
.....+.+.++ +.....+.|||||++|++.- .-.++.|.+-.+.+.. ..+.
T Consensus 202 ---------dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~----------~~Lv 262 (942)
T KOG0973|consen 202 ---------DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVD----------KDLV 262 (942)
T ss_pred ---------cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceee----------eeee
Confidence 22233333332 23567899999999999853 2345667665444321 4889
Q ss_pred cCCccEEEEEEcC-------C------------EEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEE
Q 000654 306 GHNARVWDCCLTD-------S------------FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1371)
Q Consensus 306 gh~~~I~~l~~s~-------~------------~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~T 365 (1371)
||.+++.+++|+| + .+|+|+.|++|.||.. .-+++.....-....|..++|+|||..|+.
T Consensus 263 GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lfa 342 (942)
T KOG0973|consen 263 GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFA 342 (942)
T ss_pred cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEE
Confidence 9999999999982 2 6789999999999998 667777665555557999999999999999
Q ss_pred EECCCcEEEEEcCC
Q 000654 366 AGFDSAIKVHQFQA 379 (1371)
Q Consensus 366 gg~Dg~I~lwdl~~ 379 (1371)
++.||+|.+..++.
T Consensus 343 cS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 343 CSLDGTVALIHFEE 356 (942)
T ss_pred EecCCeEEEEEcch
Confidence 99999999999853
No 91
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.85 E-value=9.1e-21 Score=195.69 Aligned_cols=282 Identities=15% Similarity=0.218 Sum_probs=224.0
Q ss_pred EEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEE
Q 000654 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1371)
Q Consensus 60 ~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v 138 (1371)
..+|.. +|..++||+. .|+| ++|+++. |+.-.+-+-++ +..+.++.||.+.|+..
T Consensus 10 c~ghtr-pvvdl~~s~i----tp~g----~flisa~kd~~pmlr~g~t---------------gdwigtfeghkgavw~~ 65 (334)
T KOG0278|consen 10 CHGHTR-PVVDLAFSPI----TPDG----YFLISASKDGKPMLRNGDT---------------GDWIGTFEGHKGAVWSA 65 (334)
T ss_pred EcCCCc-ceeEEeccCC----CCCc----eEEEEeccCCCchhccCCC---------------CCcEEeeeccCcceeee
Confidence 345555 8999999944 5898 6666654 77665544443 45788999999999999
Q ss_pred EEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCcccc
Q 000654 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPL 218 (1371)
Q Consensus 139 ~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~ 218 (1371)
.++. +...-|+++.|-+.++||..+|..+..+.. +.++.+++| +.|..+|++|+.+..++|||++.
T Consensus 66 ~l~~---na~~aasaaadftakvw~a~tgdelhsf~h--khivk~~af---~~ds~~lltgg~ekllrvfdln~------ 131 (334)
T KOG0278|consen 66 TLNK---NATRAASAAADFTAKVWDAVTGDELHSFEH--KHIVKAVAF---SQDSNYLLTGGQEKLLRVFDLNR------ 131 (334)
T ss_pred ecCc---hhhhhhhhcccchhhhhhhhhhhhhhhhhh--hheeeeEEe---cccchhhhccchHHHhhhhhccC------
Confidence 9987 777889999999999999999998877753 446777777 78899999999999999999982
Q ss_pred CCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCcee
Q 000654 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298 (1371)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~ 298 (1371)
...+...+.+|.+.|..+.|....+.++|.++|++||+||.+++.. ++
T Consensus 132 --------------------------p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-----v~- 179 (334)
T KOG0278|consen 132 --------------------------PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE-----VQ- 179 (334)
T ss_pred --------------------------CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE-----EE-
Confidence 3345567889999999999999888899999999999999999876 22
Q ss_pred eeceEeecCCccEEEEEEc-CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000654 299 VGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1371)
Q Consensus 299 ~~~~~~~gh~~~I~~l~~s-~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwd 376 (1371)
-..-...|.++.++ +..++|....+.|.+||. +-.+++.++.... |.+..++|+...+++||.|..++.||
T Consensus 180 -----sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~n--V~SASL~P~k~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 180 -----SLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCN--VESASLHPKKEFFVAGGEDFKVYKFD 252 (334)
T ss_pred -----EEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccc--cccccccCCCceEEecCcceEEEEEe
Confidence 22234568888887 566777777889999999 7778888776664 99999999999999999999999999
Q ss_pred cCC-CCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEE-cCCcEEEEEe
Q 000654 377 FQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKL 447 (1371)
Q Consensus 377 l~~-~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t-~~G~i~~~~l 447 (1371)
... ..+.. ...+|.++|.|+.|+|+|.+++++ .+|.+.+|..
T Consensus 253 y~TgeEi~~-----------------------------~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 253 YNTGEEIGS-----------------------------YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred ccCCceeee-----------------------------cccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 842 11110 124788999999999999988876 5787775544
No 92
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.9e-19 Score=191.74 Aligned_cols=315 Identities=17% Similarity=0.234 Sum_probs=212.0
Q ss_pred EEEEeCCCCc-ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeE--EEEE--EeecCccEEEEEeeccccc
Q 000654 6 LSEWRLDVGQ-YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL--IRPF--QVFHGIRLHGISCNFINCT 79 (1371)
Q Consensus 6 V~iWdl~~~~-h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~--l~~~--~~~~~~~I~~i~~s~~~~~ 79 (1371)
+.-|++...+ |.+.|++++|+ .| |++|++.+ |+.|+||++.+... .+.+ ++.-+ .-+.+.|.
T Consensus 74 ~Hpl~~~~LKgH~~~vt~~~Fs--Sd----GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~Fa----- 141 (420)
T KOG2096|consen 74 VHPLNVSVLKGHKKEVTDVAFS--SD----GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFA----- 141 (420)
T ss_pred ccchhhhhhhccCCceeeeEEc--CC----CceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEEC-----
Confidence 3445555555 88999999999 88 89999988 69999999976422 1111 11122 46788899
Q ss_pred cCCCCcceeeEEEE-ECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCc
Q 000654 80 EGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS 158 (1371)
Q Consensus 80 ~~pdg~~~~~~la~-~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~ 158 (1371)
||-+ ..++. ..+.++++|.+..... +.. +.-.+......-.+.|.-.|..+-... ++.+|++++.|..
T Consensus 142 --pDc~---s~vv~~~~g~~l~vyk~~K~~d-G~~--~~~~v~~D~~~f~~kh~v~~i~iGiA~---~~k~imsas~dt~ 210 (420)
T KOG2096|consen 142 --PDCK---SVVVSVKRGNKLCVYKLVKKTD-GSG--SHHFVHIDNLEFERKHQVDIINIGIAG---NAKYIMSASLDTK 210 (420)
T ss_pred --CCcc---eEEEEEccCCEEEEEEeeeccc-CCC--CcccccccccccchhcccceEEEeecC---CceEEEEecCCCc
Confidence 7763 33333 3478999999874331 110 000011111222345666777777665 8899999999999
Q ss_pred EEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceee
Q 000654 159 IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1371)
Q Consensus 159 I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~ 238 (1371)
|.+|++. |+.+..+...... .+..++ +|+|.++++++.--.|+||.+-..+. +.+
T Consensus 211 i~lw~lk-Gq~L~~idtnq~~-n~~aav---SP~GRFia~~gFTpDVkVwE~~f~kd-------------------G~f- 265 (420)
T KOG2096|consen 211 ICLWDLK-GQLLQSIDTNQSS-NYDAAV---SPDGRFIAVSGFTPDVKVWEPIFTKD-------------------GTF- 265 (420)
T ss_pred EEEEecC-Cceeeeecccccc-ccceee---CCCCcEEEEecCCCCceEEEEEeccC-------------------cch-
Confidence 9999998 8888777654332 223333 89999999999999999999762111 001
Q ss_pred ecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceee--eceEeecCCccEEEEEE
Q 000654 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV--GSSVLYGHNARVWDCCL 316 (1371)
Q Consensus 239 i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~--~~~~~~gh~~~I~~l~~ 316 (1371)
.....+..++||...|...+|+++...++|.|.||++||||..-.-.. .++...+ .+..+..-.+....+.+
T Consensus 266 -----qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~-~qDpk~Lk~g~~pl~aag~~p~RL~l 339 (420)
T KOG2096|consen 266 -----QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA-GQDPKILKEGSAPLHAAGSEPVRLEL 339 (420)
T ss_pred -----hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec-CCCchHhhcCCcchhhcCCCceEEEe
Confidence 134456788999999999999999999999999999999998753321 1111111 11122222333346677
Q ss_pred cC-CEEEEEeCCCeEEEEeC-CCcEEEEEe-eccCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000654 317 TD-SFIITAGEDCTCRVWGS-DGKQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1371)
Q Consensus 317 s~-~~L~Sgs~Dg~I~VWd~-~g~~l~~l~-~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwd 376 (1371)
+| ..++..+...+++++.. +|+....+. .|.+ .|.+|+|+++|++++|+| |..++++.
T Consensus 340 sP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 340 SPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CCCCcEEEeecCCceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcEEeeec-ceeeeeec
Confidence 63 34444455668999998 777666654 4666 699999999999999987 66788775
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=6e-21 Score=206.64 Aligned_cols=276 Identities=17% Similarity=0.256 Sum_probs=212.1
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|...|.|++=+ |. .-..+|+|+ ||.|+|||+....++.+++.|.+ .|.||++. .. .++.++
T Consensus 65 HrdGV~~lakh--p~---~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-~V~Gi~v~-------~~-----~~~tvg 126 (433)
T KOG0268|consen 65 HRDGVSCLAKH--PN---KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEG-LVRGICVT-------QT-----SFFTVG 126 (433)
T ss_pred cccccchhhcC--cc---hhhhhhccccCceEEEEehhhhhhhheeecccC-ceeeEEec-------cc-----ceEEec
Confidence 66779999998 86 125678887 89999999999999999999888 89999998 32 577777
Q ss_pred CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEe
Q 000654 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1371)
Q Consensus 95 gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~ 174 (1371)
.|++|+.|.+.. .+++++-+ ...++.+.-+. .+..++|+|.+ |-|||.....++.++.
T Consensus 127 dDKtvK~wk~~~----------------~p~~tilg-~s~~~gIdh~~---~~~~FaTcGe~--i~IWD~~R~~Pv~sms 184 (433)
T KOG0268|consen 127 DDKTVKQWKIDG----------------PPLHTILG-KSVYLGIDHHR---KNSVFATCGEQ--IDIWDEQRDNPVSSMS 184 (433)
T ss_pred CCcceeeeeccC----------------Ccceeeec-ccccccccccc---ccccccccCce--eeecccccCCccceee
Confidence 799999999873 22333322 24466666665 66788998865 9999998888887776
Q ss_pred cCCcceEEEEEeeccCC-CCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe
Q 000654 175 SPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1371)
Q Consensus 175 ~~~~~~v~s~~~~~~s~-d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1371)
-.... +.++.+ +| ...+|++++.|+.|.+||++ ...+++.+.
T Consensus 185 wG~Dt-i~svkf---NpvETsILas~~sDrsIvLyD~R---------------------------------~~~Pl~KVi 227 (433)
T KOG0268|consen 185 WGADS-ISSVKF---NPVETSILASCASDRSIVLYDLR---------------------------------QASPLKKVI 227 (433)
T ss_pred cCCCc-eeEEec---CCCcchheeeeccCCceEEEecc---------------------------------cCCccceee
Confidence 54432 445555 44 45678888899999999999 333333332
Q ss_pred cccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEE
Q 000654 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1371)
Q Consensus 254 gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~ 331 (1371)
-.-.-+.|+|+|++-.++++++|..+..+|++.-.. ++ ....+|...|.++.|+ |+-+++||.|.+||
T Consensus 228 -~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~-------p~--~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 228 -LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR-------PL--NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred -eeccccceecCccccceeeccccccceehhhhhhcc-------cc--hhhcccceeEEEeccCCCcchhccccccceEE
Confidence 223456799999888899999999999999987543 22 2788999999999999 68999999999999
Q ss_pred EEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 332 VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
||.. .+.....+..-.-..|.++.|+.|.+++++|++|+.|++|...
T Consensus 298 If~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 298 IFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 9999 4433333322222369999999999999999999999999874
No 94
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.85 E-value=2.8e-20 Score=192.09 Aligned_cols=287 Identities=16% Similarity=0.212 Sum_probs=227.5
Q ss_pred eccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEE
Q 000654 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (1371)
Q Consensus 127 ~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~ 206 (1371)
+..||+.+|.+++|+|..++|-+|++++.|+.-.+-+-++|..+.++.+|.+ .+|+..+ +.+....++++.|-+-+
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkg-avw~~~l---~~na~~aasaaadftak 84 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKG-AVWSATL---NKNATRAASAAADFTAK 84 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCc-ceeeeec---Cchhhhhhhhcccchhh
Confidence 4568999999999999888999999999999999988899999999988766 4677665 55677888899999999
Q ss_pred EEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 000654 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1371)
Q Consensus 207 vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~ 286 (1371)
|||.- ++..++.+ .|..-|.+++|+.|.++|++|+.+..+||+|+.
T Consensus 85 vw~a~---------------------------------tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 85 VWDAV---------------------------------TGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred hhhhh---------------------------------hhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 99987 45556555 488999999999999999999999999999998
Q ss_pred CCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEE
Q 000654 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLL 363 (1371)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L 363 (1371)
..+.+ . ..+.+|++.|..+.|. ++.|+++..|++||+||. +|..++.+.... +|+++.++++|++|
T Consensus 131 ~p~Ap----p-----~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 131 RPKAP----P-----KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRIL 199 (334)
T ss_pred CCCCC----c-----hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCEE
Confidence 86552 2 3778999999999997 789999999999999999 999999887655 59999999999876
Q ss_pred EEEECCCcEEEEEcCC-CCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEE-EcCCc
Q 000654 364 VTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGY 441 (1371)
Q Consensus 364 ~Tgg~Dg~I~lwdl~~-~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~-t~~G~ 441 (1371)
.+ ..-+.|++||... ..++. ...| ..|.+...+|+..++++ +.+.+
T Consensus 200 Ti-a~gssV~Fwdaksf~~lKs------------------~k~P-------------~nV~SASL~P~k~~fVaGged~~ 247 (334)
T KOG0278|consen 200 TI-AYGSSVKFWDAKSFGLLKS------------------YKMP-------------CNVESASLHPKKEFFVAGGEDFK 247 (334)
T ss_pred EE-ecCceeEEeccccccceee------------------ccCc-------------cccccccccCCCceEEecCcceE
Confidence 55 4667999999853 22221 1112 13666677887766555 45777
Q ss_pred EEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCc
Q 000654 442 LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1371)
Q Consensus 442 i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~ 505 (1371)
++.++...... .......+..++.|+.+ +|++.+.++|+.||+|++|....++
T Consensus 248 ~~kfDy~TgeE---i~~~nkgh~gpVhcVrF--------SPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 248 VYKFDYNTGEE---IGSYNKGHFGPVHCVRF--------SPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEEeccCCce---eeecccCCCCceEEEEE--------CCCCceeeccCCCceEEEEEecCCC
Confidence 87766544332 12222345788999887 5778999999999999999986544
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.6e-18 Score=174.63 Aligned_cols=286 Identities=15% Similarity=0.197 Sum_probs=218.7
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEeC-CcEEEEECCC------C--------eEEEEEEeecCccEEEEEeeccccccC
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEA------G--------TLIRPFQVFHGIRLHGISCNFINCTEG 81 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~d-g~I~Iwd~~s------g--------~~l~~~~~~~~~~I~~i~~s~~~~~~~ 81 (1371)
...|.+|+|+ |. +.+.++|++ .+++|.-... + ..+..-..|+...|.+.+|+
T Consensus 32 sqairav~fh--p~----g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws------- 98 (350)
T KOG0641|consen 32 SQAIRAVAFH--PA----GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS------- 98 (350)
T ss_pred hhheeeEEec--CC----CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec-------
Confidence 3568999999 98 889999995 7888775421 1 22233334555589999999
Q ss_pred CCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecC-CCcEEEEEEC-CCc
Q 000654 82 SVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-GNRSLAIGCS-DNS 158 (1371)
Q Consensus 82 pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~-dg~~Latgs~-Dg~ 158 (1371)
|+| .++++++ |++|++..+..+..+ .. -....+.-|.+.|.+++|...++ .+.+|++++. |..
T Consensus 99 ~~g----eliatgsndk~ik~l~fn~dt~~--~~--------g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 99 PCG----ELIATGSNDKTIKVLPFNADTCN--AT--------GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred Ccc----CeEEecCCCceEEEEeccccccc--cc--------CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 998 6888877 899999887754311 11 11234567999999999986322 3456777654 677
Q ss_pred EEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceee
Q 000654 159 IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1371)
Q Consensus 159 I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~ 238 (1371)
|.+-|..+|+....+.++.+.++.-. +.++-.+++|+.|.+|++||++.
T Consensus 165 iy~tdc~~g~~~~a~sghtghilaly-----swn~~m~~sgsqdktirfwdlrv-------------------------- 213 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALY-----SWNGAMFASGSQDKTIRFWDLRV-------------------------- 213 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEE-----EecCcEEEccCCCceEEEEeeec--------------------------
Confidence 88888899998888888777654322 34688999999999999999981
Q ss_pred ecccccceeeEEEE----ec---ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccE
Q 000654 239 LQDQQHTAVNLFRL----VG---HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1371)
Q Consensus 239 i~~~~~~~~~~~~l----~g---H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I 311 (1371)
...+..+ .+ ....|.+++..|.|++|++|-.|.+..+||++.++. ++ .+..|...|
T Consensus 214 -------~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~-----iq-----~f~phsadi 276 (350)
T KOG0641|consen 214 -------NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM-----IQ-----RFHPHSADI 276 (350)
T ss_pred -------cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce-----ee-----eeCCCccce
Confidence 1111111 11 236799999999999999999999999999999876 44 888999999
Q ss_pred EEEEEcC--CEEEEEeCCCeEEEEeCCCcE-----EEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 312 WDCCLTD--SFIITAGEDCTCRVWGSDGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 312 ~~l~~s~--~~L~Sgs~Dg~I~VWd~~g~~-----l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.++.|+| .+++|++.|-.|++=|+.|.. +.....|+.+ +-.+.|+|..--+++.+.|.++.+|-+.
T Consensus 277 r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk-~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK-AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc-eEEEEecCccceeeeccCcceEEEeccC
Confidence 9999995 699999999999999996643 4455678885 6688999998889999999999999874
No 96
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.3e-18 Score=175.06 Aligned_cols=291 Identities=16% Similarity=0.254 Sum_probs=209.3
Q ss_pred cCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccC----CCCCCCCCCccceeeeeeeeccCCCCcEEEE
Q 000654 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFE----LSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1371)
Q Consensus 64 ~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~----~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v 138 (1371)
+.+.|..++|+ |.| .+.++++ .++++|-....- .....+.+|. ....+.-+.|.+.|.|.
T Consensus 31 dsqairav~fh-------p~g----~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp----~v~~kr~khhkgsiyc~ 95 (350)
T KOG0641|consen 31 DSQAIRAVAFH-------PAG----GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPP----SVLCKRNKHHKGSIYCT 95 (350)
T ss_pred chhheeeEEec-------CCC----ceEEeccCCceEEEEccccccCcccccccccCCC----eEEeeeccccCccEEEE
Confidence 34579999999 988 6777776 588888654311 1111222221 12233456789999999
Q ss_pred EEEeecCCCcEEEEEECCCcEEEEECCCCeEE-----EEEecCCcceEEEEEeeccCCC-CcEEEEE-eCCCeEEEEEcc
Q 000654 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-----LEVHSPERCLLYSMKLWGDNLE-ALRIASG-TIYNEIIVWKVD 211 (1371)
Q Consensus 139 ~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~-----~~l~~~~~~~v~s~~~~~~s~d-~~~Lasg-s~dg~I~vWd~~ 211 (1371)
+|+| +|++|++|+.|++|++..+....+. .++..+.+ .+..++|...+.. +.+|+++ ..|..|++=|..
T Consensus 96 ~ws~---~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdg-tirdl~fld~~~s~~~il~s~gagdc~iy~tdc~ 171 (350)
T KOG0641|consen 96 AWSP---CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDG-TIRDLAFLDDPESGGAILASAGAGDCKIYITDCG 171 (350)
T ss_pred EecC---ccCeEEecCCCceEEEEecccccccccCcceeeeecCC-ceeeeEEecCCCcCceEEEecCCCcceEEEeecC
Confidence 9999 9999999999999999876543321 23333333 4566777655443 4455654 346667777776
Q ss_pred cCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 000654 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1371)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~ 291 (1371)
.++..+.+.||++.|.++ ++-++-.+++||.|.+||+||++-..+
T Consensus 172 ---------------------------------~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~- 216 (350)
T KOG0641|consen 172 ---------------------------------RGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSC- 216 (350)
T ss_pred ---------------------------------CCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccce-
Confidence 677889999999999887 345788999999999999999987655
Q ss_pred CCCCceeeeceEeecC---CccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEE
Q 000654 292 DSDSIEEVGSSVLYGH---NARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1371)
Q Consensus 292 ~~~~~~~~~~~~~~gh---~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~T 365 (1371)
+..+.. .+.+- ...|.+++.. +.+|++|-+|..+.+||+ .+++++.+..|..+ |.++.|+|...||+|
T Consensus 217 ----v~~l~~-~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsad-ir~vrfsp~a~yllt 290 (350)
T KOG0641|consen 217 ----VNTLDN-DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSAD-IRCVRFSPGAHYLLT 290 (350)
T ss_pred ----eeeccC-cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccc-eeEEEeCCCceEEEE
Confidence 333321 22222 2567888886 689999999999999999 78999999999994 999999999999999
Q ss_pred EECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcC
Q 000654 366 AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1371)
Q Consensus 366 gg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~ 439 (1371)
++.|..|++-|++|.+...+. +. +...|...+-.+.|.|..--+++++.
T Consensus 291 ~syd~~ikltdlqgdla~el~-------------~~------------vv~ehkdk~i~~rwh~~d~sfisssa 339 (350)
T KOG0641|consen 291 CSYDMKIKLTDLQGDLAHELP-------------IM------------VVAEHKDKAIQCRWHPQDFSFISSSA 339 (350)
T ss_pred ecccceEEEeecccchhhcCc-------------eE------------EEEeccCceEEEEecCccceeeeccC
Confidence 999999999999875433222 22 22356666778889998755555443
No 97
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=1.5e-19 Score=221.32 Aligned_cols=321 Identities=18% Similarity=0.252 Sum_probs=225.8
Q ss_pred cCCcceEEEEEeeccCCCCcEEEEEe--CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEE
Q 000654 175 SPERCLLYSMKLWGDNLEALRIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1371)
Q Consensus 175 ~~~~~~v~s~~~~~~s~d~~~Lasgs--~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1371)
.|....++++.. +|++..+++|+ .|+.++||+.. +... ....++.. -.+.+...
T Consensus 10 ~H~~~~IfSIdv---~pdg~~~aTgGq~~d~~~~iW~~~-----~vl~---------------~~~~~~~~-l~k~l~~m 65 (942)
T KOG0973|consen 10 NHNEKSIFSIDV---HPDGVKFATGGQVLDGGIVIWSQD-----PVLD---------------EKEEKNEN-LPKHLCTM 65 (942)
T ss_pred ccCCeeEEEEEe---cCCceeEecCCccccccceeeccc-----cccc---------------hhhhhhcc-cchhheee
Confidence 455556888888 78999999999 99999999987 1110 00000000 24456677
Q ss_pred ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCC----------cccCCCCceeeeceEeecCCccEEEEEEc--CCE
Q 000654 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE----------YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (1371)
Q Consensus 253 ~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~----------~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~ 320 (1371)
..|.+.|.|+.|+|||++||+||+|+.|.||+.... ........+.+ ..+.+|...|.+++|+ +.+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~--~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV--SILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE--EEEecCCCccceeccCCCccE
Confidence 889999999999999999999999999999998731 00011112223 4889999999999999 689
Q ss_pred EEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC-CCcccccCCCccccccCCc
Q 000654 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRT 398 (1371)
Q Consensus 321 L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~-~~~~~l~~~~~~~~~~~~~ 398 (1371)
|++++-|++|.||+. +.+.+..+++|.+ .|-.+.|+|-|+||++-++|++|++|++.. ...+.+..+-.
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s-~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~-------- 214 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQS-LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE-------- 214 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccc-cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh--------
Confidence 999999999999999 8899999999999 599999999999999999999999999732 12111111110
Q ss_pred cEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEc--CCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCC
Q 000654 399 EIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN--HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476 (1371)
Q Consensus 399 ~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~--~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~ 476 (1371)
. ..-...++.+.|+|||.+|++.+ ++....+.+-+.++..-..-+-+| ..++.++.+.+..
T Consensus 215 ---------------~-~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH-~~p~evvrFnP~l 277 (942)
T KOG0973|consen 215 ---------------E-SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH-SAPVEVVRFNPKL 277 (942)
T ss_pred ---------------h-CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC-CCceEEEEeChHH
Confidence 0 01223578899999999998753 344445555555442222233445 4588888776532
Q ss_pred CC--CC---CCCC----CEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcE
Q 000654 477 PK--YP---CGID----DWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRL 547 (1371)
Q Consensus 477 ~~--~s---~~~~----~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I 547 (1371)
+. .. .... ..+|+|+.|+.|.||.....+.... ...--...++. ++|++||-.|+.++.||+|
T Consensus 278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v------i~~lf~~SI~D--msWspdG~~LfacS~DGtV 349 (942)
T KOG0973|consen 278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV------IHNLFNKSIVD--MSWSPDGFSLFACSLDGTV 349 (942)
T ss_pred hccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh------hhhhhcCceee--eeEcCCCCeEEEEecCCeE
Confidence 10 00 1112 2799999999999999854333211 11112334555 4678999999999999999
Q ss_pred EEEeCCCC
Q 000654 548 KLWQLCDP 555 (1371)
Q Consensus 548 ~lWdi~~~ 555 (1371)
.+..++..
T Consensus 350 ~~i~Fee~ 357 (942)
T KOG0973|consen 350 ALIHFEEK 357 (942)
T ss_pred EEEEcchH
Confidence 99998743
No 98
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=9.3e-19 Score=213.43 Aligned_cols=270 Identities=9% Similarity=0.067 Sum_probs=192.0
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEE-------------EEEEeecCccEEEEEeeccccccC
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLI-------------RPFQVFHGIRLHGISCNFINCTEG 81 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l-------------~~~~~~~~~~I~~i~~s~~~~~~~ 81 (1371)
+...|....++ ++ +..++++. +.....|+...+..+ ..+.+|.+ .|.+++|+
T Consensus 19 ~~~~i~~~~~~--~d----~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~-~V~~v~fs------- 84 (493)
T PTZ00421 19 HFLNVTPSTAL--WD----CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEG-PIIDVAFN------- 84 (493)
T ss_pred ceecccccccc--CC----CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCC-CEEEEEEc-------
Confidence 44556666666 65 33333333 455555654433222 13455655 89999999
Q ss_pred C-CCcceeeEEEEE-CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCC-cEEEEEECCCc
Q 000654 82 S-VSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNS 158 (1371)
Q Consensus 82 p-dg~~~~~~la~~-gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg-~~Latgs~Dg~ 158 (1371)
| ++ .+|+++ .|++|++||+........ ....+..+.+|...|.+++|+| ++ .+|++|+.|++
T Consensus 85 P~d~----~~LaSgS~DgtIkIWdi~~~~~~~~--------~~~~l~~L~gH~~~V~~l~f~P---~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 85 PFDP----QKLFTASEDGTIMGWGIPEEGLTQN--------ISDPIVHLQGHTKKVGIVSFHP---SAMNVLASAGADMV 149 (493)
T ss_pred CCCC----CEEEEEeCCCEEEEEecCCCccccc--------cCcceEEecCCCCcEEEEEeCc---CCCCEEEEEeCCCE
Confidence 7 55 455555 499999999975321000 1245677889999999999999 64 68999999999
Q ss_pred EEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceee
Q 000654 159 IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1371)
Q Consensus 159 I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~ 238 (1371)
|+|||+.+++.+..+..+.. .++++.| ++++.+|++|+.|+.|++||++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~-~V~sla~---spdG~lLatgs~Dg~IrIwD~r--------------------------- 198 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSD-QITSLEW---NLDGSLLCTTSKDKKLNIIDPR--------------------------- 198 (493)
T ss_pred EEEEECCCCeEEEEEcCCCC-ceEEEEE---ECCCCEEEEecCCCEEEEEECC---------------------------
Confidence 99999999988887766543 4778877 7789999999999999999998
Q ss_pred ecccccceeeEEEEecccCC-EEEEEEcCCCCEEEEEe----CCCcEEEEEccCCcccCCCCceeeeceEee-cCCccEE
Q 000654 239 LQDQQHTAVNLFRLVGHEGS-IFRIEWSSCGSKLVSVS----DDRSARIWEVRAEYWKDSDSIEEVGSSVLY-GHNARVW 312 (1371)
Q Consensus 239 i~~~~~~~~~~~~l~gH~~~-I~~v~~spdg~~LaS~s----~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~-gh~~~I~ 312 (1371)
++..+..+.+|.+. +..+.|.+++..+++++ .|+.|++||++..... .. ... .+...+.
T Consensus 199 ------sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p----~~-----~~~~d~~~~~~ 263 (493)
T PTZ00421 199 ------DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP----YS-----TVDLDQSSALF 263 (493)
T ss_pred ------CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc----ee-----EeccCCCCceE
Confidence 55667778889765 45788999888887764 4799999999875431 11 222 2233455
Q ss_pred EEEEc--CCEEEEEe-CCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCC
Q 000654 313 DCCLT--DSFIITAG-EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1371)
Q Consensus 313 ~l~~s--~~~L~Sgs-~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg 360 (1371)
...|+ +++|++++ .|+.|++||+ +++++.........++..++|.|..
T Consensus 264 ~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 264 IPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 55665 57888887 5999999999 7777766655444467888888853
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.85 E-value=1.4e-20 Score=207.24 Aligned_cols=203 Identities=19% Similarity=0.283 Sum_probs=167.9
Q ss_pred eeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe--EEEEEecCCcceEEEEEeeccCCCCcEEEEEe
Q 000654 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1371)
Q Consensus 123 ~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~--~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs 200 (1371)
+....+..|.+.+..+.|.+ +...|++|+.|..|++|+....+ .+.++.+. ...+.++.+ .+++..+++.+
T Consensus 166 ~~~~~ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs-~g~it~~d~---d~~~~~~iAas 238 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGS-LGNITSIDF---DSDNKHVIAAS 238 (459)
T ss_pred hhhhhhhccccccceeEEcc---Ccchhhhcchhhhhhhhhcccchhhhhhhhhcc-CCCcceeee---cCCCceEEeec
Confidence 34456778999999999999 88899999999999999997665 33444333 234566766 67788999999
Q ss_pred CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcE
Q 000654 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1371)
Q Consensus 201 ~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~V 280 (1371)
.|+.+++|++. ..+..+++.||++.|+++.|......+++|+.|++|
T Consensus 239 ~d~~~r~Wnvd---------------------------------~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 239 NDKNLRLWNVD---------------------------------SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTI 285 (459)
T ss_pred CCCceeeeecc---------------------------------chhhhhhhcccccceeeehhhccccceeeccccchh
Confidence 99999999998 677788999999999999999887779999999999
Q ss_pred EEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCC
Q 000654 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1371)
Q Consensus 281 riWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spd 359 (1371)
++||+....+ .+ -.-....+.++...+..+++|..|++||+||. .+.+......+.. |+++..+++
T Consensus 286 K~WDl~k~~C-----~k------t~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~--vtSl~ls~~ 352 (459)
T KOG0288|consen 286 KLWDLQKAYC-----SK------TVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGR--VTSLDLSMD 352 (459)
T ss_pred hhhhhhhhhe-----ec------cccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcc--eeeEeeccC
Confidence 9999998665 22 11223456666666788999999999999998 7788888887763 999999999
Q ss_pred CCEEEEEECCCcEEEEEcC
Q 000654 360 SSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 360 g~~L~Tgg~Dg~I~lwdl~ 378 (1371)
+..|.+.+.|.++.++|+.
T Consensus 353 g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 353 GLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred CeEEeeecCCCceeeeecc
Confidence 9999999999999999985
No 100
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6.7e-19 Score=188.17 Aligned_cols=275 Identities=17% Similarity=0.281 Sum_probs=198.0
Q ss_pred EEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEE
Q 000654 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1371)
Q Consensus 195 ~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~ 274 (1371)
.+++|+....|.-+++.-.. ++... ....+..++..+..|.++|++++. ++.++|||
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-------------~~~~~--------s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSG 59 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-------------KGCTD--------SVKPTLKPLFAFSAHAGSITALAV--SGPYVASG 59 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-------------ccccc--------ccceeeeccccccccccceeEEEe--cceeEecc
Confidence 46778888888777776110 00000 001134557778899999999998 67999999
Q ss_pred eCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC----CEEEEEeCCCeEEEEeC-CCcEEEEEeeccCc
Q 000654 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR 349 (1371)
Q Consensus 275 s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~----~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~ 349 (1371)
|.|-+|+|||+....+ . ..+..|.+.|+++.|.+ ++|++|++||.|.+|+. .-.++..++.|.++
T Consensus 60 ssDetI~IYDm~k~~q-----l-----g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRKQ-----L-----GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ 129 (362)
T ss_pred CCCCcEEEEeccchhh-----h-----cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc
Confidence 9999999999998765 2 27889999999999983 38999999999999999 77899999999995
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEc-CCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEe
Q 000654 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (1371)
Q Consensus 350 ~V~sl~~spdg~~L~Tgg~Dg~I~lwdl-~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs 428 (1371)
|+.++++|.+++-++.|.|+.+++|++ +|+.- |.... ...-..+.|+
T Consensus 130 -Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a------------------~v~~L-------------~~~at~v~w~ 177 (362)
T KOG0294|consen 130 -VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA------------------FVLNL-------------KNKATLVSWS 177 (362)
T ss_pred -cceeEecCCCceEEEEcCCceeeeehhhcCccc------------------eeecc-------------CCcceeeEEc
Confidence 999999999999999999999999999 43211 11111 1123448899
Q ss_pred cCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCcccc
Q 000654 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (1371)
Q Consensus 429 ~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~ 508 (1371)
|.|..++......+-.+.+-+..... ....+..+.|+-+ .++..|++|..++.|++||.++..+.
T Consensus 178 ~~Gd~F~v~~~~~i~i~q~d~A~v~~-----~i~~~~r~l~~~~---------l~~~~L~vG~d~~~i~~~D~ds~~~~- 242 (362)
T KOG0294|consen 178 PQGDHFVVSGRNKIDIYQLDNASVFR-----EIENPKRILCATF---------LDGSELLVGGDNEWISLKDTDSDTPL- 242 (362)
T ss_pred CCCCEEEEEeccEEEEEecccHhHhh-----hhhccccceeeee---------cCCceEEEecCCceEEEeccCCCccc-
Confidence 99986666666666544433222111 1111223444333 44678999999999999998864332
Q ss_pred ceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCC
Q 000654 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1371)
Q Consensus 509 ~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~ 555 (1371)
.....++.++-+++....+++.||++++.||.|++||++..
T Consensus 243 ------~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 243 ------TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ------eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 11223444555655556788899999999999999999864
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.4e-19 Score=188.98 Aligned_cols=324 Identities=16% Similarity=0.296 Sum_probs=229.1
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeC
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~ 201 (1371)
+.++..+.||.+.|+.++... ....+.+++.|.+.+||.++++.++.++.+|.+. +.++.| .+.+.++++++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~---tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS-VNsikf---h~s~~L~lTaSG 210 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADS---TQPICGTASADHTARIWSLESGACLATYTGHTGS-VNSIKF---HNSGLLLLTASG 210 (481)
T ss_pred Eeehhhhcccccceeeehhhc---CCcceeecccccceeEEeeccccceeeecccccc-eeeEEe---ccccceEEEccC
Confidence 566778889999999999876 7788999999999999999999999999988764 677887 667899999999
Q ss_pred CCeEEEEEcccCCccccCCCCCCCCCC-------CCCC-CcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEE
Q 000654 202 YNEIIVWKVDWEHVAPLLNSPEGNHAH-------GSSS-DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1371)
Q Consensus 202 dg~I~vWd~~~~~~~~~~~~~~~~s~~-------~~~~-~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS 273 (1371)
|++-.||...-.--.|....+...+.. .... .++..+. +...-..++..+.||.+.|.+..|...++.+++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s-D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vT 289 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS-DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVT 289 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc-CCceeeeeeeeeeccccceEehhhhcCcceeee
Confidence 999999985421111111111111000 0000 0111110 111123467889999999999999999999999
Q ss_pred EeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEEEEEeCCCeEEEEeC--CCcEEEEEeeccCc
Q 000654 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS--DGKQLKMIKEHIGR 349 (1371)
Q Consensus 274 ~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~I~VWd~--~g~~l~~l~~h~~~ 349 (1371)
+|.|++..+||+.++.. +. .+.||....+.++-++ .+++|++.|.+.++||+ .-..+..|.+|..
T Consensus 290 aSWDRTAnlwDVEtge~-----v~-----~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd- 358 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEV-----VN-----ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD- 358 (481)
T ss_pred eeccccceeeeeccCce-----ec-----cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc-
Confidence 99999999999999866 33 7899999999888874 68899999999999999 3456788999999
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEec
Q 000654 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS 429 (1371)
Q Consensus 350 ~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~ 429 (1371)
.|+++.|..+ ..+++|++|.+|++||++.. ..++-.+. ...+++.++.+.
T Consensus 359 tVTS~vF~~d-d~vVSgSDDrTvKvWdLrNM----------------RsplATIR-------------tdS~~NRvavs~ 408 (481)
T KOG0300|consen 359 TVTSVVFNTD-DRVVSGSDDRTVKVWDLRNM----------------RSPLATIR-------------TDSPANRVAVSK 408 (481)
T ss_pred ceeEEEEecC-CceeecCCCceEEEeeeccc----------------cCcceeee-------------cCCccceeEeec
Confidence 6999999876 46899999999999999541 12222222 224567777777
Q ss_pred CCcEEEEEcCCcEEEEEeecCCCceeEEe----EeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcC
Q 000654 430 EDTLYIATNHGYLYHTKLCDMDSVNWNKI----LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1371)
Q Consensus 430 d~~llv~t~~G~i~~~~l~~~~~~~w~~i----~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~ 503 (1371)
.+.+++.-.+..- +++++....+...+ .++| ..-+.|.+..... +. .-|++.+-|..+.-|++..
T Consensus 409 g~~iIAiPhDNRq--vRlfDlnG~RlaRlPrtsRqgH-rRMV~c~AW~eeh-----p~-cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 409 GHPIIAIPHDNRQ--VRLFDLNGNRLARLPRTSRQGH-RRMVTCCAWLEEH-----PA-CNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CCceEEeccCCce--EEEEecCCCccccCCccccccc-ceeeeeeeccccC-----cc-cccccccccceeeeeEecc
Confidence 7667776654432 23444333221122 2233 4556666554432 22 3466777788888898864
No 102
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.1e-19 Score=217.71 Aligned_cols=268 Identities=12% Similarity=0.145 Sum_probs=201.5
Q ss_pred EEEEEE-eecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCC-------------------------
Q 000654 56 LIRPFQ-VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFEL------------------------- 108 (1371)
Q Consensus 56 ~l~~~~-~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~------------------------- 108 (1371)
..++++ .|.+ .|+++.|| +|| .+||++| |+.|+||.+....
T Consensus 258 ~~Qe~~~ah~g-aIw~mKFS-------~DG----KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~ 325 (712)
T KOG0283|consen 258 VVQEISNAHKG-AIWAMKFS-------HDG----KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPS 325 (712)
T ss_pred EeeccccccCC-cEEEEEeC-------CCC----ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcc
Confidence 345556 5666 89999999 999 7888888 9999999986510
Q ss_pred --CC-----------CCCCCCc-------cceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe
Q 000654 109 --SP-----------NSQYQPE-------TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1371)
Q Consensus 109 --~~-----------~~~~~~~-------~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~ 168 (1371)
.. .....+. -....+++..+.||.+.|+++.|+. ..+|++++.|++||||++....
T Consensus 326 ~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK----n~fLLSSSMDKTVRLWh~~~~~ 401 (712)
T KOG0283|consen 326 TSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK----NNFLLSSSMDKTVRLWHPGRKE 401 (712)
T ss_pred ccccccccccccccccccCCccccCCCccccccccchhhhhccchhheeccccc----CCeeEeccccccEEeecCCCcc
Confidence 00 0000000 1123467788999999999999995 5688899999999999999999
Q ss_pred EEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceee
Q 000654 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1371)
Q Consensus 169 ~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1371)
++..+... ..+.+++|++ .|.+++++|+.|+.|+||++. ...
T Consensus 402 CL~~F~Hn--dfVTcVaFnP--vDDryFiSGSLD~KvRiWsI~----------------------------------d~~ 443 (712)
T KOG0283|consen 402 CLKVFSHN--DFVTCVAFNP--VDDRYFISGSLDGKVRLWSIS----------------------------------DKK 443 (712)
T ss_pred eeeEEecC--CeeEEEEecc--cCCCcEeecccccceEEeecC----------------------------------cCe
Confidence 99888544 4688888864 478899999999999999997 122
Q ss_pred EEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEe
Q 000654 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAG 325 (1371)
Q Consensus 249 ~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs 325 (1371)
+.....-..-|++++|.|||++.+.|+.+|.+++|+....+......+..-. .....|. +|+.+.|. +..++..+
T Consensus 444 Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~-~Kk~~~~-rITG~Q~~p~~~~~vLVTS 521 (712)
T KOG0283|consen 444 VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN-KKKKQGK-RITGLQFFPGDPDEVLVTS 521 (712)
T ss_pred eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc-CccccCc-eeeeeEecCCCCCeEEEec
Confidence 2233334478999999999999999999999999999886652110011000 0112233 89999997 35678888
Q ss_pred CCCeEEEEeC-CCcEEEEEeeccCc-CEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 326 EDCTCRVWGS-DGKQLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 326 ~Dg~I~VWd~-~g~~l~~l~~h~~~-~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
.|..|||+|. +..++..|+++... .=....|+.||++|+++++|..|.+|++..
T Consensus 522 nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 522 NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 9999999999 77888888876541 224567999999999999999999999854
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.7e-19 Score=208.81 Aligned_cols=266 Identities=17% Similarity=0.256 Sum_probs=213.8
Q ss_pred eEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe
Q 000654 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1371)
Q Consensus 89 ~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~ 168 (1371)
..++++-+..|.+|+-..+. ...+..+ +.+.|+++.|++ +|.+|++|..+|.|.|||..+.+
T Consensus 189 n~laValg~~vylW~~~s~~-------------v~~l~~~--~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k 250 (484)
T KOG0305|consen 189 NVLAVALGQSVYLWSASSGS-------------VTELCSF--GEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQK 250 (484)
T ss_pred CeEEEEecceEEEEecCCCc-------------eEEeEec--CCCceEEEEECC---CCCEEEEeecCCeEEEEehhhcc
Confidence 47888888999999987643 2333333 378999999999 99999999999999999999988
Q ss_pred EEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceee
Q 000654 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1371)
Q Consensus 169 ~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1371)
.+..+..++..-+-++++ +...+.+|+.++.|..+|++. ....
T Consensus 251 ~~~~~~~~h~~rvg~laW-----~~~~lssGsr~~~I~~~dvR~--------------------------------~~~~ 293 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAW-----NSSVLSSGSRDGKILNHDVRI--------------------------------SQHV 293 (484)
T ss_pred ccccccCCcCceeEEEec-----cCceEEEecCCCcEEEEEEec--------------------------------chhh
Confidence 888888755556666654 478899999999999999982 1111
Q ss_pred EEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEe
Q 000654 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAG 325 (1371)
Q Consensus 249 ~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs 325 (1371)
...+.+|...|..+.|++|+.+||+|+.|+.+.|||...... . ..+..|.+.|.+++|+ ...||+|+
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p-----~-----~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP-----K-----FTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc-----c-----EEEeccceeeeEeeeCCCccCceEEcC
Confidence 223789999999999999999999999999999999955443 1 3889999999999998 48999984
Q ss_pred --CCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEE-EE-CCCcEEEEEcCCCCcccccCCCccccccCCccE
Q 000654 326 --EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT-AG-FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1371)
Q Consensus 326 --~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~T-gg-~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i 400 (1371)
.|+.|++||. +|..+..+..... |.+|.|++..+-|++ .| .++.|.||+...
T Consensus 364 Gs~D~~i~fwn~~~g~~i~~vdtgsQ--VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--------------------- 420 (484)
T KOG0305|consen 364 GSADRCIKFWNTNTGARIDSVDTGSQ--VCSLIWSKKYKELLSTHGYSENQITLWKYPS--------------------- 420 (484)
T ss_pred CCcccEEEEEEcCCCcEecccccCCc--eeeEEEcCCCCEEEEecCCCCCcEEEEeccc---------------------
Confidence 7999999999 8888888766554 999999998875554 33 477999999842
Q ss_pred EEeeecCCccceeeccCCCccEEEEEEecCCcEEE-EEcCCcEEEEEeecC
Q 000654 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDM 450 (1371)
Q Consensus 401 ~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv-~t~~G~i~~~~l~~~ 450 (1371)
.+.+..+.+|...|..++++||+..++ ++.+..+.+|++++.
T Consensus 421 --------~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 421 --------MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --------cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 112334557888999999999986554 567888888888775
No 104
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.84 E-value=9e-20 Score=193.32 Aligned_cols=270 Identities=14% Similarity=0.216 Sum_probs=198.0
Q ss_pred eeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC------e------------EEEEEecCCcceEEEEEe
Q 000654 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS------S------------IILEVHSPERCLLYSMKL 186 (1371)
Q Consensus 125 ~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~------~------------~~~~l~~~~~~~v~s~~~ 186 (1371)
...+..|..++.+.+|+| ||.++|||+.|.+|+|.|++.. + .++++-.|. ..+..+.|
T Consensus 105 t~ylt~HK~~cR~aafs~---DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~-devn~l~F 180 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSP---DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV-DEVNDLDF 180 (430)
T ss_pred eEEEeecccceeeeeeCC---CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc-Ccccceee
Confidence 345668999999999999 9999999999999999998621 0 122222222 23445555
Q ss_pred eccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcC
Q 000654 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (1371)
Q Consensus 187 ~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~sp 266 (1371)
.|...+|++|+.|++|++||+... ..+.......-..+|.+|.|+|
T Consensus 181 ---HPre~ILiS~srD~tvKlFDfsK~-------------------------------saKrA~K~~qd~~~vrsiSfHP 226 (430)
T KOG0640|consen 181 ---HPRETILISGSRDNTVKLFDFSKT-------------------------------SAKRAFKVFQDTEPVRSISFHP 226 (430)
T ss_pred ---cchhheEEeccCCCeEEEEecccH-------------------------------HHHHHHHHhhccceeeeEeecC
Confidence 677899999999999999999710 1111112223457899999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEE
Q 000654 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1371)
Q Consensus 267 dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l 343 (1371)
.|.+|+.|.+-.++|+||+.+.++- -.- ..-.+|.+.|+++.++ +++.+||+.||.|++||- .++++.++
T Consensus 227 sGefllvgTdHp~~rlYdv~T~Qcf-----vsa--nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~ 299 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNTYQCF-----VSA--NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTI 299 (430)
T ss_pred CCceEEEecCCCceeEEeccceeEe-----eec--CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHH
Confidence 9999999999999999999987651 111 2346799999999998 689999999999999998 89999887
Q ss_pred e-eccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc-CCCCcccccCCC--------ccccccCCccEEEeeecCCcccee
Q 000654 344 K-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHP--------EAKEFNGRTEIFSIKIPNFSEQIR 413 (1371)
Q Consensus 344 ~-~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl-~~~~~~~l~~~~--------~~~~~~~~~~i~s~~~~~~~~~~~ 413 (1371)
. .|.+..|.+..|..+++++++.|.|..+++|.+ .+++++.+.+.. ....|+.. +-+.+-.......+-
T Consensus 300 ~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht-EdyVl~pDEas~slc 378 (430)
T KOG0640|consen 300 GNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT-EDYVLFPDEASNSLC 378 (430)
T ss_pred HhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc-cceEEccccccCcee
Confidence 4 577778999999999999999999999999999 567777665431 12233322 222222122222222
Q ss_pred ec------------cCCCccEEEEEEecCCcEEEEEcCC
Q 000654 414 LT------------DSKSEYVRCLHLTSEDTLYIATNHG 440 (1371)
Q Consensus 414 ~~------------~~~~~~V~~lafs~d~~llv~t~~G 440 (1371)
.| -+|.+.++.+.-+|.+..++++++.
T Consensus 379 sWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 379 SWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred eccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccc
Confidence 33 3788999999999988766655443
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=4.1e-20 Score=200.22 Aligned_cols=289 Identities=16% Similarity=0.177 Sum_probs=218.5
Q ss_pred eeEEEEecccCCEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEe
Q 000654 247 VNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG 325 (1371)
Q Consensus 247 ~~~~~l~gH~~~I~~v~~spdg-~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs 325 (1371)
..+..+.||.+.|.+++=+|.. ..++||+.||.|+|||+....+ . ..+..|.+.|..++++...+++++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----~-----~~f~AH~G~V~Gi~v~~~~~~tvg 126 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----I-----RTFKAHEGLVRGICVTQTSFFTVG 126 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-----h-----heeecccCceeeEEecccceEEec
Confidence 4566778999999999999987 7899999999999999998765 2 388999999999999989999999
Q ss_pred CCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeee
Q 000654 326 EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1371)
Q Consensus 326 ~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~ 405 (1371)
.|.+|+.|.+++.++.++.+... +..+.-+..+..++|+|.+ |.|||....
T Consensus 127 dDKtvK~wk~~~~p~~tilg~s~--~~gIdh~~~~~~FaTcGe~--i~IWD~~R~------------------------- 177 (433)
T KOG0268|consen 127 DDKTVKQWKIDGPPLHTILGKSV--YLGIDHHRKNSVFATCGEQ--IDIWDEQRD------------------------- 177 (433)
T ss_pred CCcceeeeeccCCcceeeecccc--ccccccccccccccccCce--eeecccccC-------------------------
Confidence 99999999998888888876654 7888877778889999874 889998421
Q ss_pred cCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCC
Q 000654 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD 485 (1371)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~ 485 (1371)
.++.++.|--|. |.++.+. +....
T Consensus 178 --------------~Pv~smswG~Dt-----------------------------------i~svkfN-------pvETs 201 (433)
T KOG0268|consen 178 --------------NPVSSMSWGADS-----------------------------------ISSVKFN-------PVETS 201 (433)
T ss_pred --------------CccceeecCCCc-----------------------------------eeEEecC-------CCcch
Confidence 123333332221 1111110 12235
Q ss_pred EEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCc
Q 000654 486 WVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSK 565 (1371)
Q Consensus 486 lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~ 565 (1371)
+|+++.+|+.|.+||+..+..+.++.... . ++ -+||+|..-.+++++.|..++.+|++....
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi~~m--R----TN----~IswnPeafnF~~a~ED~nlY~~DmR~l~~-------- 263 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVILTM--R----TN----TICWNPEAFNFVAANEDHNLYTYDMRNLSR-------- 263 (433)
T ss_pred heeeeccCCceEEEecccCCccceeeeec--c----cc----ceecCccccceeeccccccceehhhhhhcc--------
Confidence 78888899999999998776654432211 1 11 157888665677899999999999985431
Q ss_pred cceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccccccccccC--CcCeEEE
Q 000654 566 TNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHG--ISTVSTL 643 (1371)
Q Consensus 566 ~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg--~~~VTsV 643 (1371)
|-..-.+|..+|+.++|||.|+-+++|+-|.+|+||.+..+ ..+.+ -|. ...|.+|
T Consensus 264 ------p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~--------~SRdi--------YhtkRMq~V~~V 321 (433)
T KOG0268|consen 264 ------PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG--------HSRDI--------YHTKRMQHVFCV 321 (433)
T ss_pred ------cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC--------cchhh--------hhHhhhheeeEE
Confidence 11113479999999999999999999999999999999864 11222 111 2579999
Q ss_pred EEeecCCCceEEEEEcCCCcEEEEEEecCC
Q 000654 644 SVAKLRSNQTEIRSTGGDGCICYLEYDKDR 673 (1371)
Q Consensus 644 ~f~~~~~~~~~L~T~g~DG~v~iw~l~~~~ 673 (1371)
.|+ .|..|+++||.||.||+|.-...+
T Consensus 322 k~S---~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 322 KYS---MDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEe---ccccEEEecCCCcceeeeecchhh
Confidence 999 678999999999999999977654
No 106
>PTZ00420 coronin; Provisional
Probab=99.84 E-value=2.6e-18 Score=210.16 Aligned_cols=251 Identities=11% Similarity=0.091 Sum_probs=181.3
Q ss_pred CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCC-CcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccce
Q 000654 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSV-STRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCV 120 (1371)
Q Consensus 43 dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pd-g~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v 120 (1371)
.+.|++|+......+..+.+|.+ .|.+++|+ |+ + .+|++++ |++|+||++.........
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~-~V~~lafs-------P~~~----~lLASgS~DgtIrIWDi~t~~~~~~~------- 113 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTS-SILDLQFN-------PCFS----EILASGSEDLTIRVWEIPHNDESVKE------- 113 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCC-CEEEEEEc-------CCCC----CEEEEEeCCCeEEEEECCCCCccccc-------
Confidence 37899999887777888888776 89999999 75 4 4566555 999999999753200000
Q ss_pred eeeeeeeccCCCCcEEEEEEEeecCCCcE-EEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEE
Q 000654 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1371)
Q Consensus 121 ~~~~~~~l~gh~~~I~~v~fsp~~~dg~~-Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasg 199 (1371)
...++..+.+|...|.+++|+| ++.. |++++.|++|+|||+.+++....+..+ ..+.++.| ++++.+|+++
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P---~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~--~~V~Slsw---spdG~lLat~ 185 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNP---MNYYIMCSSGFDSFVNIWDIENEKRAFQINMP--KKLSSLKW---NIKGNLLSGT 185 (568)
T ss_pred cccceEEeecCCCcEEEEEECC---CCCeEEEEEeCCCeEEEEECCCCcEEEEEecC--CcEEEEEE---CCCCCEEEEE
Confidence 0134556789999999999999 7765 579999999999999999877766532 35778777 7889999999
Q ss_pred eCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEE-----EEEcCCCCEEEEE
Q 000654 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR-----IEWSSCGSKLVSV 274 (1371)
Q Consensus 200 s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~-----v~~spdg~~LaS~ 274 (1371)
+.|+.|+|||++ ++..+..+.+|.+.+.. ..|++++.+|+|+
T Consensus 186 s~D~~IrIwD~R---------------------------------sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 186 CVGKHMHIIDPR---------------------------------KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred ecCCEEEEEECC---------------------------------CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 999999999998 56667788899886543 3456899999998
Q ss_pred eCC----CcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeCCCcEEEEEee-cc
Q 000654 275 SDD----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKE-HI 347 (1371)
Q Consensus 275 s~D----g~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~-h~ 347 (1371)
+.| ++|+|||++....+ +.. ..+..+.+.+...... +.++++|+.|++|++|++....+..+.. +.
T Consensus 233 G~d~~~~R~VkLWDlr~~~~p----l~~---~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s 305 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTTSA----LVT---MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKS 305 (568)
T ss_pred EcCCCCccEEEEEECCCCCCc----eEE---EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccccc
Confidence 877 47999999864321 110 1222333333222222 5688999999999999993333333332 22
Q ss_pred CcCEEEEEEcCCC
Q 000654 348 GRGIWRCLYDSLS 360 (1371)
Q Consensus 348 ~~~V~sl~~spdg 360 (1371)
..++.+++|.|+.
T Consensus 306 ~~p~~g~~f~Pkr 318 (568)
T PTZ00420 306 CSPFRSFGFLPKQ 318 (568)
T ss_pred CCCccceEEcccc
Confidence 2368889999864
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.1e-19 Score=209.88 Aligned_cols=242 Identities=19% Similarity=0.343 Sum_probs=189.4
Q ss_pred eEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC
Q 000654 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1371)
Q Consensus 89 ~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~ 167 (1371)
+.|.++| |+.|++|++....... .......+..|.+||++++... +++.|++++.|-+|++|+...+
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~---------s~~~~asme~HsDWVNDiiL~~---~~~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEP---------STPYIASMEHHSDWVNDIILCG---NGKTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred ceEEecCCCceEEEeccccccCCc---------ccchhhhhhhhHhHHhhHHhhc---CCCceEEecCCceEEEeecccC
Confidence 4455555 9999999997643110 1224677889999999999987 8889999999999999999876
Q ss_pred e--EEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccc
Q 000654 168 S--IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1371)
Q Consensus 168 ~--~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~ 245 (1371)
. +...+..|.. .+.++++. .++..++|+|+-|+.|.+||+..+..... . . ..
T Consensus 106 ~~~c~stir~H~D-YVkcla~~--ak~~~lvaSgGLD~~IflWDin~~~~~l~------~-------s----------~n 159 (735)
T KOG0308|consen 106 NTFCMSTIRTHKD-YVKCLAYI--AKNNELVASGGLDRKIFLWDINTGTATLV------A-------S----------FN 159 (735)
T ss_pred cchhHhhhhcccc-hheeeeec--ccCceeEEecCCCccEEEEEccCcchhhh------h-------h----------cc
Confidence 3 3444443322 23333332 35678999999999999999984311000 0 0 01
Q ss_pred eeeEEEEe-cccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEE
Q 000654 246 AVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1371)
Q Consensus 246 ~~~~~~l~-gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~ 322 (1371)
......+. |+..+|++++.++.+..+++|+..+-+++||.++.+. + +.+.||+..|.++..+ +..++
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k-----i-----mkLrGHTdNVr~ll~~dDGt~~l 229 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK-----I-----MKLRGHTDNVRVLLVNDDGTRLL 229 (735)
T ss_pred ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc-----e-----eeeeccccceEEEEEcCCCCeEe
Confidence 11222233 8999999999999999999999999999999998765 2 3778999999999997 68999
Q ss_pred EEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 323 Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
+++.||+|++||+ ..+++.++..|.. +||++..+|+-..+.+|+.||.|..=|+..
T Consensus 230 s~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 230 SASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 9999999999999 7889999999998 699999999999999999999999988853
No 108
>PTZ00421 coronin; Provisional
Probab=99.83 E-value=2.6e-18 Score=209.46 Aligned_cols=241 Identities=13% Similarity=0.123 Sum_probs=172.3
Q ss_pred ccCcEEEEEEEecC-CCCCCCCEEEEEe-CCcEEEEECCCC-------eEEEEEEeecCccEEEEEeeccccccCCCCcc
Q 000654 16 YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAG-------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1371)
Q Consensus 16 h~~~Vtavafs~~p-d~~~~~~llaaG~-dg~I~Iwd~~sg-------~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~ 86 (1371)
|.++|++++|+ | + +.+|++|+ |++|+|||+.++ +.+..+.+|.. +|.+++|+ |++.
T Consensus 74 H~~~V~~v~fs--P~d----~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-~V~~l~f~-------P~~~- 138 (493)
T PTZ00421 74 QEGPIIDVAFN--PFD----PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK-KVGIVSFH-------PSAM- 138 (493)
T ss_pred CCCCEEEEEEc--CCC----CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC-cEEEEEeC-------cCCC-
Confidence 77899999999 8 5 57888877 799999999765 34567777665 89999999 7642
Q ss_pred eeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECC
Q 000654 87 VTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1371)
Q Consensus 87 ~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~ 165 (1371)
.+|++++ |++|+|||+.. .+.+..+.+|.+.|.+++|+| ++.+|++++.|++|++||+.
T Consensus 139 --~iLaSgs~DgtVrIWDl~t---------------g~~~~~l~~h~~~V~sla~sp---dG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 139 --NVLASAGADMVVNVWDVER---------------GKAVEVIKCHSDQITSLEWNL---DGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred --CEEEEEeCCCEEEEEECCC---------------CeEEEEEcCCCCceEEEEEEC---CCCEEEEecCCCEEEEEECC
Confidence 4555554 99999999985 345667789999999999999 99999999999999999999
Q ss_pred CCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEe----CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000654 166 NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT----IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1371)
Q Consensus 166 ~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs----~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1371)
+++.+..+..+.......+.+ .+++..+++++ .|+.|++||++.
T Consensus 199 sg~~v~tl~~H~~~~~~~~~w---~~~~~~ivt~G~s~s~Dr~VklWDlr~----------------------------- 246 (493)
T PTZ00421 199 DGTIVSSVEAHASAKSQRCLW---AKRKDLIITLGCSKSQQRQIMLWDTRK----------------------------- 246 (493)
T ss_pred CCcEEEEEecCCCCcceEEEE---cCCCCeEEEEecCCCCCCeEEEEeCCC-----------------------------
Confidence 999888887766543333333 34555665543 479999999971
Q ss_pred cccceeeEEEEe-cccCCEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCC
Q 000654 242 QQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS 319 (1371)
Q Consensus 242 ~~~~~~~~~~l~-gH~~~I~~v~~spdg~~LaS~s-~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~ 319 (1371)
...++.... .+...+....|++++.+|++++ .|+.|++||+.++.. .. .....+...+..++|.++
T Consensus 247 ---~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~-----~~----~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 247 ---MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL-----TF----CSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ---CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce-----EE----EeeccCCCCCcceEeccc
Confidence 112222222 2334566778999999999887 599999999988654 11 122334556677777754
Q ss_pred EEEEEeCCCeEEEEeC
Q 000654 320 FIITAGEDCTCRVWGS 335 (1371)
Q Consensus 320 ~L~Sgs~Dg~I~VWd~ 335 (1371)
..+=...--..|+|.+
T Consensus 315 ~~~dv~~~Ei~r~~~l 330 (493)
T PTZ00421 315 WSLDTRKCEIARFYAL 330 (493)
T ss_pred ccccccceeeeEEEEe
Confidence 4332222222344444
No 109
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=9.6e-19 Score=187.00 Aligned_cols=235 Identities=15% Similarity=0.253 Sum_probs=184.8
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|.++|+|||.+ ++|+|+|+ |.+|+|||+.+...+..+..|.+ .|+++.|. ++-. ...+|.+.
T Consensus 42 H~~sitavAVs--------~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag-sitaL~F~-------~~~S-~shLlS~s 104 (362)
T KOG0294|consen 42 HAGSITALAVS--------GPYVASGSSDETIHIYDMRKRKQLGILLSHAG-SITALKFY-------PPLS-KSHLLSGS 104 (362)
T ss_pred cccceeEEEec--------ceeEeccCCCCcEEEEeccchhhhcceecccc-ceEEEEec-------CCcc-hhheeeec
Confidence 88999999999 79999998 79999999999988888888876 89999999 3310 01467777
Q ss_pred CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEe
Q 000654 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1371)
Q Consensus 95 gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~ 174 (1371)
.||.|.+|+... +.++..+++|.+.|+.++.+| .+++-++.+.|+.+++||+.+|+.-..+.
T Consensus 105 dDG~i~iw~~~~---------------W~~~~slK~H~~~Vt~lsiHP---S~KLALsVg~D~~lr~WNLV~Gr~a~v~~ 166 (362)
T KOG0294|consen 105 DDGHIIIWRVGS---------------WELLKSLKAHKGQVTDLSIHP---SGKLALSVGGDQVLRTWNLVRGRVAFVLN 166 (362)
T ss_pred CCCcEEEEEcCC---------------eEEeeeecccccccceeEecC---CCceEEEEcCCceeeeehhhcCccceeec
Confidence 799999999874 889999999999999999999 99988889999999999999988755544
Q ss_pred cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEec
Q 000654 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1371)
Q Consensus 175 ~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g 254 (1371)
-.... ..+.| ++.|.+++.+. .+.|-+|.+... .....+ .
T Consensus 167 L~~~a--t~v~w---~~~Gd~F~v~~-~~~i~i~q~d~A---------------------------------~v~~~i-~ 206 (362)
T KOG0294|consen 167 LKNKA--TLVSW---SPQGDHFVVSG-RNKIDIYQLDNA---------------------------------SVFREI-E 206 (362)
T ss_pred cCCcc--eeeEE---cCCCCEEEEEe-ccEEEEEecccH---------------------------------hHhhhh-h
Confidence 33222 22444 68888887776 466888988721 111111 1
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc----CCEEEEEeCCCeE
Q 000654 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTC 330 (1371)
Q Consensus 255 H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s----~~~L~Sgs~Dg~I 330 (1371)
....+.++.|. ++..|++|.+|+.|++||-.+... . ..+.+|+.+|-++.+- ..+|+|++.||.|
T Consensus 207 ~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~-----~-----~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 207 NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP-----L-----TEFLAHENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred ccccceeeeec-CCceEEEecCCceEEEeccCCCcc-----c-----eeeecchhheeeeEEEecCCceEEEEeccCceE
Confidence 12345566554 567899999999999999887544 2 3788999999999965 2599999999999
Q ss_pred EEEeCC
Q 000654 331 RVWGSD 336 (1371)
Q Consensus 331 ~VWd~~ 336 (1371)
+|||++
T Consensus 276 ~vWd~~ 281 (362)
T KOG0294|consen 276 KVWDID 281 (362)
T ss_pred EEEEcc
Confidence 999993
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=1.7e-19 Score=201.54 Aligned_cols=281 Identities=13% Similarity=0.218 Sum_probs=224.6
Q ss_pred CCcccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCC---eEEEEEEee-cCccEEEEEeeccccccCCCCccee
Q 000654 13 VGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG---TLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVT 88 (1371)
Q Consensus 13 ~~~h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg---~~l~~~~~~-~~~~I~~i~~s~~~~~~~pdg~~~~ 88 (1371)
+..|-+-|++++++ .. .+++.+|.-|-|+|||+... ..+..+... .++.|..+..+ |||
T Consensus 415 tL~HGEvVcAvtIS--~~----trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-------pdg---- 477 (705)
T KOG0639|consen 415 TLAHGEVVCAVTIS--NP----TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-------PDG---- 477 (705)
T ss_pred hhccCcEEEEEEec--CC----cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEec-------CCC----
Confidence 33466778999999 44 69999999999999999632 344444443 45678888888 999
Q ss_pred eEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC
Q 000654 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1371)
Q Consensus 89 ~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~ 167 (1371)
+.|+++| ..++.|||+.... ......+....-...+++.+| |.+.+.++..||.|.|||+.+.
T Consensus 478 rtLivGGeastlsiWDLAapT-------------prikaeltssapaCyALa~sp---DakvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 478 RTLIVGGEASTLSIWDLAAPT-------------PRIKAELTSSAPACYALAISP---DAKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred ceEEeccccceeeeeeccCCC-------------cchhhhcCCcchhhhhhhcCC---ccceeeeeccCCcEEEEEcccc
Confidence 6666766 6899999998654 222233333344677889999 9999999999999999999999
Q ss_pred eEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccccee
Q 000654 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1371)
Q Consensus 168 ~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~ 247 (1371)
..++.++++... +.++.+ +.||..|-+|+-|++|+.||++ ++.
T Consensus 542 ~~VrqfqGhtDG-ascIdi---s~dGtklWTGGlDntvRcWDlr---------------------------------egr 584 (705)
T KOG0639|consen 542 TLVRQFQGHTDG-ASCIDI---SKDGTKLWTGGLDNTVRCWDLR---------------------------------EGR 584 (705)
T ss_pred eeeecccCCCCC-ceeEEe---cCCCceeecCCCccceeehhhh---------------------------------hhh
Confidence 999999987653 345555 7899999999999999999998 232
Q ss_pred eEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEe
Q 000654 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG 325 (1371)
Q Consensus 248 ~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs 325 (1371)
.+... .....|+++.++|.+.+|+.|-..+.+.+-....... ..+..|..-|.++.|. ++++++.+
T Consensus 585 qlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----------yqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 585 QLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----------YQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred hhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccc-----------eeecccccEEEEEEecccCceeeecC
Confidence 22221 2457899999999999999999999988887766544 4677899999999997 89999999
Q ss_pred CCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 326 ~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
.|..+-.|.. -|..+...+... .|.++.++.|.++++||+.|....+|.+
T Consensus 653 kDnlLnawrtPyGasiFqskE~S--sVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIFQSKESS--SVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCccccceeeccccC--cceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999998 677776666554 5999999999999999999999888875
No 111
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.83 E-value=5.3e-16 Score=189.30 Aligned_cols=181 Identities=17% Similarity=0.291 Sum_probs=131.0
Q ss_pred eEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCC-----cEEEEEEEeecCCCcEEEEEECCCcEEEEE
Q 000654 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH-----WVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1371)
Q Consensus 89 ~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~-----~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd 163 (1371)
...+..+++.+-+||..... ..... .+.. ...-+-+++ +.-++++|+.-+.|.+|+
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~---------------~~~~i-~~~er~~l~~~~~~g~s~---~~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSS---------------VLSKI-QSDERCTLYSSLIIGDSA---EELYIASGSVFGEIIVWK 161 (967)
T ss_pred eEEEEEcCceEEEEecccCc---------------eehhc-CCCceEEEEeEEEEeccC---cEEEEEeccccccEEEEe
Confidence 45555678999999987532 11111 1111 112222333 556899999999999999
Q ss_pred CCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccc
Q 000654 164 ISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1371)
Q Consensus 164 ~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~ 243 (1371)
.........+.+|++ .++++.+ +.++.++++.+.|..+++|++++.+
T Consensus 162 ~~~dn~p~~l~GHeG-~iF~i~~---s~dg~~i~s~SdDRsiRlW~i~s~~----------------------------- 208 (967)
T KOG0974|consen 162 PHEDNKPIRLKGHEG-SIFSIVT---SLDGRYIASVSDDRSIRLWPIDSRE----------------------------- 208 (967)
T ss_pred ccccCCcceecccCC-ceEEEEE---ccCCcEEEEEecCcceeeeeccccc-----------------------------
Confidence 974333334556655 4667766 7899999999999999999998221
Q ss_pred cceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCc-cEEEEEEc--CCE
Q 000654 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA-RVWDCCLT--DSF 320 (1371)
Q Consensus 244 ~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~-~I~~l~~s--~~~ 320 (1371)
......-||+..|+.+.|.|+ +++|++.|.+.++|+...... .++.+|.. .||.++.. ...
T Consensus 209 ---~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l-----------~~y~~h~g~~iw~~~~~~~~~~ 272 (967)
T KOG0974|consen 209 ---VLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQL-----------EVYDEHSGKGIWKIAVPIGVII 272 (967)
T ss_pred ---ccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccccee-----------hhhhhhhhcceeEEEEcCCceE
Confidence 111355689999999999998 999999999999997766443 15666654 58999998 367
Q ss_pred EEEEeCCCeEEEEeCCC
Q 000654 321 IITAGEDCTCRVWGSDG 337 (1371)
Q Consensus 321 L~Sgs~Dg~I~VWd~~g 337 (1371)
++|++.|+.+++|++.+
T Consensus 273 ~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 273 KVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEeeccCcchhhhhhhc
Confidence 89999999999999844
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.83 E-value=1e-18 Score=193.37 Aligned_cols=281 Identities=13% Similarity=0.180 Sum_probs=214.8
Q ss_pred CcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEccc
Q 000654 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1371)
Q Consensus 133 ~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~ 212 (1371)
..|.++...| ....+.||+.|..+.++|...++.+..++++...+. ++.+ +++...+++++.|-.|+||...
T Consensus 220 pgi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~-~v~~---~~~~~~v~~aSad~~i~vws~~- 291 (506)
T KOG0289|consen 220 PGITALDIIP---SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKIT-SVKF---HKDLDTVITASADEIIRVWSVP- 291 (506)
T ss_pred CCeeEEeecC---CCCcceecCCCCceEEEecchhhhhhhccCcceEEE-EEEe---ccchhheeecCCcceEEeeccc-
Confidence 3678888887 567899999999999999999999999998877544 4444 6778899999999999999987
Q ss_pred CCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccC
Q 000654 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1371)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~ 292 (1371)
..........|+++|+.+..+|.|.||++++.|++.-+.|++++..
T Consensus 292 --------------------------------~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-- 337 (506)
T KOG0289|consen 292 --------------------------------LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-- 337 (506)
T ss_pred --------------------------------cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--
Confidence 2223445668999999999999999999999999999999999876
Q ss_pred CCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECC
Q 000654 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1371)
Q Consensus 293 ~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~D 369 (1371)
+..+ .-.+..-.+++.+|+ +..|.+|..|+.++|||+ ++..+..|.+|.+ +|.+++|+.+|-||+++.+|
T Consensus 338 ---lt~v---s~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 338 ---LTVV---SDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADD 410 (506)
T ss_pred ---EEEE---eeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecC
Confidence 2111 111223458999999 468889999999999999 7778899999999 79999999999999999999
Q ss_pred CcEEEEEcCC-CCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEee
Q 000654 370 SAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLC 448 (1371)
Q Consensus 370 g~I~lwdl~~-~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~ 448 (1371)
+.|++||++. ...+++.. + ....+.++.|.+.|.+++.. |.-..+.+.
T Consensus 411 ~~V~lwDLRKl~n~kt~~l------------------~-----------~~~~v~s~~fD~SGt~L~~~--g~~l~Vy~~ 459 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFKTIQL------------------D-----------EKKEVNSLSFDQSGTYLGIA--GSDLQVYIC 459 (506)
T ss_pred CeEEEEEehhhcccceeec------------------c-----------ccccceeEEEcCCCCeEEee--cceeEEEEE
Confidence 9999999953 22222211 1 11258899999999887776 222223344
Q ss_pred cCCCceeEEeEeecCCc-cEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEE
Q 000654 449 DMDSVNWNKILQVSEGM-PIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (1371)
Q Consensus 449 ~~~~~~w~~i~~~~~~~-~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi 501 (1371)
......|..+.+.+... ...++.+ .....++++++.|..++++.+
T Consensus 460 ~k~~k~W~~~~~~~~~sg~st~v~F--------g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 460 KKKTKSWTEIKELADHSGLSTGVRF--------GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccccceeeehhhhcccccceeee--------cccceEEeeccchhheEEeec
Confidence 55566798877655322 3333333 244678999999988888754
No 113
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.83 E-value=2.1e-19 Score=190.56 Aligned_cols=286 Identities=13% Similarity=0.237 Sum_probs=213.8
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC------------C------eEEEEEEeecCccEEEEEeecc
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA------------G------TLIRPFQVFHGIRLHGISCNFI 76 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~s------------g------~~l~~~~~~~~~~I~~i~~s~~ 76 (1371)
|.+++.+.+|+ || |.++|+|+ |-.|+|+|++- | -+|+++..|-+ .|..+.|+
T Consensus 111 HK~~cR~aafs--~D----G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-evn~l~FH-- 181 (430)
T KOG0640|consen 111 HKSPCRAAAFS--PD----GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-EVNDLDFH-- 181 (430)
T ss_pred cccceeeeeeC--CC----CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-cccceeec--
Confidence 78899999999 99 89999999 89999999861 1 24566776666 89999999
Q ss_pred ccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC
Q 000654 77 NCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1371)
Q Consensus 77 ~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~ 155 (1371)
|.. ..|++++ |++|++||+.....+ +..+.+ ....+|.++.|+| .|.+|+.|..
T Consensus 182 -----Pre----~ILiS~srD~tvKlFDfsK~saK------------rA~K~~-qd~~~vrsiSfHP---sGefllvgTd 236 (430)
T KOG0640|consen 182 -----PRE----TILISGSRDNTVKLFDFSKTSAK------------RAFKVF-QDTEPVRSISFHP---SGEFLLVGTD 236 (430)
T ss_pred -----chh----heEEeccCCCeEEEEecccHHHH------------HHHHHh-hccceeeeEeecC---CCceEEEecC
Confidence 764 5666655 999999999853310 111111 2346899999999 9999999999
Q ss_pred CCcEEEEECCCCeEEEEEe--cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCC
Q 000654 156 DNSIRVWDISNSSIILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1371)
Q Consensus 156 Dg~I~vWd~~~~~~~~~l~--~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1371)
..++++||+.+-++..... ..+...+.++.+ ++.+.+-++|+.||.|++||--
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y---s~t~~lYvTaSkDG~IklwDGV---------------------- 291 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY---SSTGSLYVTASKDGAIKLWDGV---------------------- 291 (430)
T ss_pred CCceeEEeccceeEeeecCcccccccceeEEEe---cCCccEEEEeccCCcEEeeccc----------------------
Confidence 9999999999988765443 233445667777 8889999999999999999976
Q ss_pred cceeeecccccceeeEEEEe-ccc-CCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccE
Q 000654 234 FKCFKLQDQQHTAVNLFRLV-GHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1371)
Q Consensus 234 ~~~i~i~~~~~~~~~~~~l~-gH~-~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I 311 (1371)
..+++..+. .|. ..|.+..|..+++++++.+.|..|++|.+.+++. +......-..|....-
T Consensus 292 -----------S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~-----l~~YtGAg~tgrq~~r 355 (430)
T KOG0640|consen 292 -----------SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM-----LKEYTGAGTTGRQKHR 355 (430)
T ss_pred -----------cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce-----EEEEecCCcccchhhh
Confidence 344444432 454 4689999999999999999999999999999876 3322101111212222
Q ss_pred EEEEEc--CCEEEEEeC-CCeEEEEeC-CCcEEEE-EeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 312 WDCCLT--DSFIITAGE-DCTCRVWGS-DGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 312 ~~l~~s--~~~L~Sgs~-Dg~I~VWd~-~g~~l~~-l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
+...|. ..+++.-.+ .+.+.-||. ++..+.. -.+|.+ ++..+.-+|.+.-++|++.|-.+|+|--
T Consensus 356 tqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~-a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 356 TQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG-AVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC-CceEEEeCCCCCceeeecccceeeeeee
Confidence 344454 466666544 467899998 5444433 346888 7999999999999999999999999975
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=1.6e-18 Score=193.87 Aligned_cols=256 Identities=17% Similarity=0.277 Sum_probs=197.9
Q ss_pred eeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEE-EEEec----------------CCcceEEEEEee
Q 000654 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEVHS----------------PERCLLYSMKLW 187 (1371)
Q Consensus 125 ~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~-~~l~~----------------~~~~~v~s~~~~ 187 (1371)
...+..|.-+|.+++++| +..++++++.+++|.-|++.+++.. ..++. .+...+.++++
T Consensus 135 ~~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av- 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV- 210 (479)
T ss_pred ceeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE-
Confidence 456678999999999999 9999999999999999999887643 11110 12233455665
Q ss_pred ccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCC
Q 000654 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (1371)
Q Consensus 188 ~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spd 267 (1371)
++|+.+||+|+.|..|.||+.+ +.+.++.+.+|.+.|.+++|-..
T Consensus 211 --S~Dgkylatgg~d~~v~Iw~~~---------------------------------t~ehv~~~~ghr~~V~~L~fr~g 255 (479)
T KOG0299|consen 211 --SSDGKYLATGGRDRHVQIWDCD---------------------------------TLEHVKVFKGHRGAVSSLAFRKG 255 (479)
T ss_pred --cCCCcEEEecCCCceEEEecCc---------------------------------ccchhhcccccccceeeeeeecC
Confidence 8999999999999999999999 67788889999999999999988
Q ss_pred CCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-CCEEE-EEeCCCeEEEEeCCCcEEEEEee
Q 000654 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFII-TAGEDCTCRVWGSDGKQLKMIKE 345 (1371)
Q Consensus 268 g~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-~~~L~-Sgs~Dg~I~VWd~~g~~l~~l~~ 345 (1371)
-..|++++.|++|++|++..... ++ +++||+..|..+.-. -..++ .|+.|+++++|++.......+.+
T Consensus 256 t~~lys~s~Drsvkvw~~~~~s~-----ve-----tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg 325 (479)
T KOG0299|consen 256 TSELYSASADRSVKVWSIDQLSY-----VE-----TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRG 325 (479)
T ss_pred ccceeeeecCCceEEEehhHhHH-----HH-----HHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeC
Confidence 88999999999999999988655 33 899999999998775 34455 45599999999995555567788
Q ss_pred ccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccce-eeccCCCccEEE
Q 000654 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI-RLTDSKSEYVRC 424 (1371)
Q Consensus 346 h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~-~~~~~~~~~V~~ 424 (1371)
|.+ .+-|++|-.+ ..++||++||.|.+|++-. ..++|....+...... ... .+..+|++
T Consensus 326 ~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~K-----------------Kkplf~~~~AHgv~~~~~~~-~~~~Wits 385 (479)
T KOG0299|consen 326 GEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLK-----------------KKPLFTSRLAHGVIPELDPV-NGNFWITS 385 (479)
T ss_pred CCC-CeeeEEEecc-cceeeccCCceEEEeeecc-----------------cCceeEeeccccccCCcccc-ccccceee
Confidence 887 5999999754 6789999999999999942 1223333322221111 111 12258999
Q ss_pred EEEecCCcEEEEEc-CCcEEEEEeec
Q 000654 425 LHLTSEDTLYIATN-HGYLYHTKLCD 449 (1371)
Q Consensus 425 lafs~d~~llv~t~-~G~i~~~~l~~ 449 (1371)
++..|...++++++ +|.+.+|.+.+
T Consensus 386 la~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 386 LAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred eEecccCceEEecCCCCceEEEEecC
Confidence 99999888888764 78888776654
No 115
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=1.7e-18 Score=180.68 Aligned_cols=273 Identities=13% Similarity=0.148 Sum_probs=212.8
Q ss_pred EEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEE
Q 000654 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1371)
Q Consensus 59 ~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~ 137 (1371)
+++.|.. +|+.++|. -+| ..+++++ |+++++|+++... +...-..++|.+.|-.
T Consensus 15 ~~~~~~~-~v~Sv~wn-------~~g----~~lasgs~dktv~v~n~e~~r-------------~~~~~~~~gh~~svdq 69 (313)
T KOG1407|consen 15 ELQGHVQ-KVHSVAWN-------CDG----TKLASGSFDKTVSVWNLERDR-------------FRKELVYRGHTDSVDQ 69 (313)
T ss_pred Hhhhhhh-cceEEEEc-------ccC----ceeeecccCCceEEEEecchh-------------hhhhhcccCCCcchhh
Confidence 3445554 89999999 888 6777665 9999999998532 3344567799999999
Q ss_pred EEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccc
Q 000654 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1371)
Q Consensus 138 v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~ 217 (1371)
++|.| ...+.+++++.|.+|++||+..+++...+....+.+. +.+ +|++.+++.++.|..|...|.+
T Consensus 70 l~w~~--~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~--i~w---sp~g~~~~~~~kdD~it~id~r------ 136 (313)
T KOG1407|consen 70 LCWDP--KHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN--ITW---SPDGEYIAVGNKDDRITFIDAR------ 136 (313)
T ss_pred heeCC--CCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE--EEE---cCCCCEEEEecCcccEEEEEec------
Confidence 99998 4667899999999999999999999888876554432 222 7999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCce
Q 000654 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (1371)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~ 297 (1371)
+.+..... ...-.+..+.|+.++.+++-...-|.|.|-....-+
T Consensus 137 ---------------------------~~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk-------- 180 (313)
T KOG1407|consen 137 ---------------------------TYKIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK-------- 180 (313)
T ss_pred ---------------------------ccceeehh-cccceeeeeeecCCCCEEEEecCCceEEEEeccccc--------
Confidence 22222221 223456778888888887777778899998887533
Q ss_pred eeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEE
Q 000654 298 EVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1371)
Q Consensus 298 ~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~l 374 (1371)
++ ..+..|+....|+.|+ +++||+|+.|..+.+||+ +--+++.+..+.- +|..+.|+.||++||+++.|-.|-|
T Consensus 181 pv--~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw-pVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 181 PV--QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW-PVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred cc--cccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC-ceEEEEeccCcceeeccCccceEEe
Confidence 33 3889999999999998 699999999999999999 6778888888887 8999999999999999999988877
Q ss_pred EEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEc
Q 000654 375 HQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (1371)
Q Consensus 375 wdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~ 438 (1371)
=+++ .+.+++.+. +.++...++|+|...+|+.+.
T Consensus 258 A~ve-----------------tGd~~~eI~-------------~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 258 AEVE-----------------TGDRVWEIP-------------CEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred Eecc-----------------cCCeEEEee-------------ccCCceeEEecCCCceeeEEe
Confidence 6653 122233332 345678899999988877653
No 116
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=5e-17 Score=185.83 Aligned_cols=224 Identities=18% Similarity=0.254 Sum_probs=163.3
Q ss_pred CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEE-----
Q 000654 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII----- 170 (1371)
Q Consensus 96 d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~----- 170 (1371)
++.+-|.-+..... +-+.+..+.+|.+.|.++.|+|+ +..+||||+.|..|+||.+..|...
T Consensus 54 G~~lgvlPl~~~Gr-----------~~r~i~~l~~H~d~VtDl~FspF--~D~LLAT~S~D~~VKiW~lp~g~~q~LSap 120 (1012)
T KOG1445|consen 54 GGKLGVLPLTAKGR-----------RTRDIGILAAHGDQVTDLGFSPF--ADELLATCSRDEPVKIWKLPRGHSQKLSAP 120 (1012)
T ss_pred CceEEEEeccccCc-----------cccccceeecccceeeccCcccc--chhhhhcccCCCeeEEEecCCCcccccCCc
Confidence 35777777764320 13456678899999999999996 5678999999999999999854321
Q ss_pred EEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEE
Q 000654 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1371)
Q Consensus 171 ~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~ 250 (1371)
....++..-++-++.|++.. ..+++++ ..|.++|||+. +.+.+.
T Consensus 121 e~~~g~~~~~vE~l~fHpTa--Dgil~s~-a~g~v~i~D~s---------------------------------tqk~~~ 164 (1012)
T KOG1445|consen 121 EIDVGGGNVIVECLRFHPTA--DGILASG-AHGSVYITDIS---------------------------------TQKTAV 164 (1012)
T ss_pred ceeecCCceEEEEeecccCc--CceEEec-cCceEEEEEcc---------------------------------cCceee
Confidence 12234555667778886542 2344444 47999999998 677888
Q ss_pred EEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCcc-EEEEEEcCC--EEEEEeCC
Q 000654 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR-VWDCCLTDS--FIITAGED 327 (1371)
Q Consensus 251 ~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~-I~~l~~s~~--~L~Sgs~D 327 (1371)
.+.+|...|.+..|+.||.+|++...|+.|+|||.+....+ ++ ...+|.+. =..+.|.++ .|++.+.+
T Consensus 165 el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~p----iQ-----~te~H~~~rdsRv~w~Gn~~rlisTGF~ 235 (1012)
T KOG1445|consen 165 ELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEP----IQ-----TTEGHGGMRDSRVLWAGNWERLISTGFT 235 (1012)
T ss_pred cccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCc----cc-----cccccccchhheeeeccchhhhhhcccc
Confidence 99999999999999999999999999999999999875432 33 55777653 345677764 67766655
Q ss_pred ----CeEEEEeC--CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEc
Q 000654 328 ----CTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQF 377 (1371)
Q Consensus 328 ----g~I~VWd~--~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg-~Dg~I~lwdl 377 (1371)
..+++||. =+.+++++......+|.---|.||.++|+-+| .+.++..+.+
T Consensus 236 ~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 236 TKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred hhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEe
Confidence 45899998 36677776655544577677899988766555 4666666665
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.4e-18 Score=184.12 Aligned_cols=269 Identities=18% Similarity=0.197 Sum_probs=202.5
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG- 95 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g- 95 (1371)
...|+.|.|+ |. ++.+|++.-||++++||....++...++ + +.++.+++|. ++. .+++++
T Consensus 13 ~d~IS~v~f~--~~---~~~LLvssWDgslrlYdv~~~~l~~~~~-~-~~plL~c~F~-------d~~-----~~~~G~~ 73 (323)
T KOG1036|consen 13 EDGISSVKFS--PS---SSDLLVSSWDGSLRLYDVPANSLKLKFK-H-GAPLLDCAFA-------DES-----TIVTGGL 73 (323)
T ss_pred hhceeeEEEc--Cc---CCcEEEEeccCcEEEEeccchhhhhhee-c-CCceeeeecc-------CCc-----eEEEecc
Confidence 4569999999 86 2455555559999999998877666666 3 3489999998 653 444444
Q ss_pred CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEec
Q 000654 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1371)
Q Consensus 96 d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~ 175 (1371)
|+.|+.+|+.++. ...+-.|.+.|.|+.+++ ....+++|+.|++|++||..+......+..
T Consensus 74 dg~vr~~Dln~~~----------------~~~igth~~~i~ci~~~~---~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~ 134 (323)
T KOG1036|consen 74 DGQVRRYDLNTGN----------------EDQIGTHDEGIRCIEYSY---EVGCVISGSWDKTIKFWDPRNKVVVGTFDQ 134 (323)
T ss_pred CceEEEEEecCCc----------------ceeeccCCCceEEEEeec---cCCeEEEcccCccEEEEecccccccccccc
Confidence 9999999998743 234557999999999998 777899999999999999987555555444
Q ss_pred CCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecc
Q 000654 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1371)
Q Consensus 176 ~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1371)
.. .+|++.. .++.|+.|+.+..+.+||++.-... ...+-..-
T Consensus 135 ~k--kVy~~~v-----~g~~LvVg~~~r~v~iyDLRn~~~~-------------------------------~q~reS~l 176 (323)
T KOG1036|consen 135 GK--KVYCMDV-----SGNRLVVGTSDRKVLIYDLRNLDEP-------------------------------FQRRESSL 176 (323)
T ss_pred Cc--eEEEEec-----cCCEEEEeecCceEEEEEcccccch-------------------------------hhhccccc
Confidence 43 5777744 6789999999999999999821100 00111223
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCC---------ccEEEEEEcC--CEEEEE
Q 000654 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---------ARVWDCCLTD--SFIITA 324 (1371)
Q Consensus 256 ~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~---------~~I~~l~~s~--~~L~Sg 324 (1371)
.-.+.+|++.|++.-.+.+|-||.|.+=.+..... .+..+ ..+..|. -+|.+++|++ +.|+||
T Consensus 177 kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~-----~~skk-yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTg 250 (323)
T KOG1036|consen 177 KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE-----AQSKK-YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATG 250 (323)
T ss_pred eeEEEEEEEecCCCceEEEeecceEEEEccCCchH-----Hhhhc-eeEEeeecccCCceEEEEeceeEeccccceEEec
Confidence 45688999999988899999999998866655422 11111 3455553 2689999996 689999
Q ss_pred eCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEEC
Q 000654 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1371)
Q Consensus 325 s~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~ 368 (1371)
+.||.|.+||+ +.+.+..+..... .|.+++|+.+|..||+++.
T Consensus 251 GsDG~V~~Wd~~~rKrl~q~~~~~~-SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 251 GSDGIVNIWDLFNRKRLKQLAKYET-SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCCceEEEccCcchhhhhhccCCCC-ceEEEEeccCCCeEEEEec
Confidence 99999999999 7777888877755 5999999999999999874
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.2e-19 Score=185.53 Aligned_cols=251 Identities=20% Similarity=0.293 Sum_probs=189.8
Q ss_pred ecCccEEEEEeeccccccCCCCcceeeEEEEE-CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEE
Q 000654 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1371)
Q Consensus 63 ~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~-gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fs 141 (1371)
|++ .||.+... --| ..|+++ +|++|+|+..+... ...++.+|.||.++|+.++|.
T Consensus 10 H~D-~IHda~lD-------yyg----krlATcsSD~tVkIf~v~~n~------------~s~ll~~L~Gh~GPVwqv~wa 65 (299)
T KOG1332|consen 10 HED-MIHDAQLD-------YYG----KRLATCSSDGTVKIFEVRNNG------------QSKLLAELTGHSGPVWKVAWA 65 (299)
T ss_pred hhh-hhhHhhhh-------hhc----ceeeeecCCccEEEEEEcCCC------------CceeeeEecCCCCCeeEEeec
Confidence 444 67777655 334 455555 59999999998643 247889999999999999996
Q ss_pred eecCCCcEEEEEECCCcEEEEECCCCeEEEEEe-cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCC
Q 000654 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1371)
Q Consensus 142 p~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~-~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~ 220 (1371)
. ..-|.+||+++.||.|.||.-++++-.+... ..+...+.++++.+ ..-+..|+.++.||.|.|.+++...
T Consensus 66 h-Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wap-heygl~LacasSDG~vsvl~~~~~g------ 137 (299)
T KOG1332|consen 66 H-PKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAP-HEYGLLLACASSDGKVSVLTYDSSG------ 137 (299)
T ss_pred c-cccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccc-cccceEEEEeeCCCcEEEEEEcCCC------
Confidence 4 2468899999999999999998885432221 22344566776644 3467899999999999999998210
Q ss_pred CCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCC---C-----------CEEEEEeCCCcEEEEEcc
Q 000654 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC---G-----------SKLVSVSDDRSARIWEVR 286 (1371)
Q Consensus 221 ~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spd---g-----------~~LaS~s~Dg~VriWdl~ 286 (1371)
..........|+-.|+++.|.|- | +.|+||+-|..|+||+..
T Consensus 138 ------------------------~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~ 193 (299)
T KOG1332|consen 138 ------------------------GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD 193 (299)
T ss_pred ------------------------CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence 11112234579999999999885 4 579999999999999998
Q ss_pred CCcccCCCCceeeeceEeecCCccEEEEEEcC------CEEEEEeCCCeEEEEeCC--CcE--EEEEeeccCcCEEEEEE
Q 000654 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSD--GKQ--LKMIKEHIGRGIWRCLY 356 (1371)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~------~~L~Sgs~Dg~I~VWd~~--g~~--l~~l~~h~~~~V~sl~~ 356 (1371)
.+.-. .+ .++.+|...|.+++|.| .+|+++++||++.||..+ +++ ...+..... .++++.|
T Consensus 194 ~~~w~----~e----~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSW 264 (299)
T KOG1332|consen 194 SDSWK----LE----RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSW 264 (299)
T ss_pred Ccchh----hh----hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc-ceEEEEE
Confidence 86431 12 36899999999999984 589999999999999873 211 122333334 7999999
Q ss_pred cCCCCEEEEEECCCcEEEEEcC
Q 000654 357 DSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 357 spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
+..|+.|+.++.|+.|.+|.-+
T Consensus 265 S~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 265 SLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred eccccEEEEecCCcEEEEEEeC
Confidence 9999999999999999999863
No 119
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.2e-17 Score=179.95 Aligned_cols=289 Identities=14% Similarity=0.189 Sum_probs=207.4
Q ss_pred eEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEe
Q 000654 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG 325 (1371)
Q Consensus 248 ~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs 325 (1371)
+.+.+....+.|.++.|+++|..|+++++|-+++|||..++.+ ++ ++..+...+-.++|. +..++.++
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----~~-----ti~skkyG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----VK-----TINSKKYGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----ee-----EeecccccccEEEEecCCceEEEcc
Confidence 3444555678999999999999999999999999999999876 33 556666677777885 56666665
Q ss_pred C--CCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEE
Q 000654 326 E--DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFS 402 (1371)
Q Consensus 326 ~--Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s 402 (1371)
. |.+||.-++ +.+.++.|.+|.. .|.+|+.+|-+..+++++.|++|++||++...-+.+ +.
T Consensus 76 tk~d~tIryLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~---------------l~ 139 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL---------------LN 139 (311)
T ss_pred CCCCCceEEEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE---------------Ee
Confidence 5 889999999 8999999999999 599999999999999999999999999963211100 00
Q ss_pred eeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCC-cEEEEEeecCCCceeEEeEee-cCCccEEEEeecCCCCCCC
Q 000654 403 IKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG-YLYHTKLCDMDSVNWNKILQV-SEGMPIICMDLLSNEPKYP 480 (1371)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G-~i~~~~l~~~~~~~w~~i~~~-~~~~~I~~ld~~~~~~~~s 480 (1371)
. ..-...||.|+|-++|.+..+ .|.++++.....+-+....-. ....+...+.+
T Consensus 140 ~----------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~F-------- 195 (311)
T KOG1446|consen 140 L----------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEF-------- 195 (311)
T ss_pred c----------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEE--------
Confidence 0 112356899999888877665 565555544433333222211 22334444544
Q ss_pred CCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccc
Q 000654 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVC 560 (1371)
Q Consensus 481 ~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~ 560 (1371)
+++++.+++++..+.+++.|.-+|.... .+...+....+..-.++.|+++++++|+.||+|.+|+++.+..
T Consensus 196 S~dGK~iLlsT~~s~~~~lDAf~G~~~~------tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~--- 266 (311)
T KOG1446|consen 196 SPDGKSILLSTNASFIYLLDAFDGTVKS------TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK--- 266 (311)
T ss_pred cCCCCEEEEEeCCCcEEEEEccCCcEee------eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE---
Confidence 5788999999999999999988776332 2222222222223468899999999999999999999976532
Q ss_pred cccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEE
Q 000654 561 YESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFP 608 (1371)
Q Consensus 561 ~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd 608 (1371)
...+...+...+.|+.|+|.-.++|+++.. +.+|-
T Consensus 267 -----------v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~--l~fw~ 301 (311)
T KOG1446|consen 267 -----------VAVLRGPNGGPVSCVRFNPRYAMFVSASSN--LVFWL 301 (311)
T ss_pred -----------eeEecCCCCCCccccccCCceeeeeecCce--EEEEe
Confidence 122222367889999999988888887665 55553
No 120
>PTZ00420 coronin; Provisional
Probab=99.82 E-value=5.1e-18 Score=207.61 Aligned_cols=217 Identities=16% Similarity=0.200 Sum_probs=161.7
Q ss_pred CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCC-CcEEEEEECCCcEEEEECCCCe------
Q 000654 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSS------ 168 (1371)
Q Consensus 96 d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~d-g~~Latgs~Dg~I~vWd~~~~~------ 168 (1371)
.+.+++|+... ...+..+.+|.+.|++++|+| + +.+||+|+.|++|+|||+.++.
T Consensus 53 ~gvI~L~~~~r---------------~~~v~~L~gH~~~V~~lafsP---~~~~lLASgS~DgtIrIWDi~t~~~~~~~i 114 (568)
T PTZ00420 53 IGAIRLENQMR---------------KPPVIKLKGHTSSILDLQFNP---CFSEILASGSEDLTIRVWEIPHNDESVKEI 114 (568)
T ss_pred eeEEEeeecCC---------------CceEEEEcCCCCCEEEEEEcC---CCCCEEEEEeCCCeEEEEECCCCCcccccc
Confidence 46788887653 245677889999999999999 5 7899999999999999997642
Q ss_pred --EEEEEecCCcceEEEEEeeccCCCCc-EEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccc
Q 000654 169 --IILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1371)
Q Consensus 169 --~~~~l~~~~~~~v~s~~~~~~s~d~~-~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~ 245 (1371)
.+..+..| ...+.++.| +|++. +|++++.|+.|+|||++ .
T Consensus 115 ~~p~~~L~gH-~~~V~sVaf---~P~g~~iLaSgS~DgtIrIWDl~---------------------------------t 157 (568)
T PTZ00420 115 KDPQCILKGH-KKKISIIDW---NPMNYYIMCSSGFDSFVNIWDIE---------------------------------N 157 (568)
T ss_pred ccceEEeecC-CCcEEEEEE---CCCCCeEEEEEeCCCeEEEEECC---------------------------------C
Confidence 12234444 345677777 56665 46789999999999998 3
Q ss_pred eeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEE-----EEEc--C
Q 000654 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD-----CCLT--D 318 (1371)
Q Consensus 246 ~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~-----l~~s--~ 318 (1371)
+.....+. |...|.+++|+|+|.+|++++.|+.|+|||++++.. + ..+.+|.+.+.. ..|+ +
T Consensus 158 g~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-----i-----~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 158 EKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-----A-----SSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-----E-----EEEecccCCceeEEEEeeeEcCCC
Confidence 44444454 567899999999999999999999999999998755 2 267788775433 3343 4
Q ss_pred CEEEEEeCCC----eEEEEeCC--CcEEEEEeeccCcC-EEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 319 SFIITAGEDC----TCRVWGSD--GKQLKMIKEHIGRG-IWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 319 ~~L~Sgs~Dg----~I~VWd~~--g~~l~~l~~h~~~~-V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.+|+|++.|+ +|+|||+. ++++..+..+...+ +......+++.++++|+.|++|++|++.
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 7899888774 79999993 56776655443312 2223334568889999999999999995
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=1.3e-18 Score=194.67 Aligned_cols=272 Identities=17% Similarity=0.244 Sum_probs=214.1
Q ss_pred cCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccC--CCCcEEEEEEE
Q 000654 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFL 141 (1371)
Q Consensus 64 ~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~g--h~~~I~~v~fs 141 (1371)
++.-|.++.+| ... +.+.++|.|.|+|||+.... ...++..|.. -...|+++.++
T Consensus 418 HGEvVcAvtIS-------~~t----rhVyTgGkgcVKVWdis~pg------------~k~PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 418 HGEVVCAVTIS-------NPT----RHVYTGGKGCVKVWDISQPG------------NKSPVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred cCcEEEEEEec-------CCc----ceeEecCCCeEEEeeccCCC------------CCCccccccccCcccceeeeEec
Confidence 34457777787 333 78888999999999998643 1123333333 24589999999
Q ss_pred eecCCCcEEEEEECCCcEEEEECCCCeEEEEEecC-CcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCC
Q 000654 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1371)
Q Consensus 142 p~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~-~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~ 220 (1371)
| ||+.|++|+.-.++.|||+.......+.+-. ....+|.+++ ++|..+.+++..||.|.|||+.
T Consensus 475 p---dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~---spDakvcFsccsdGnI~vwDLh--------- 539 (705)
T KOG0639|consen 475 P---DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI---SPDAKVCFSCCSDGNIAVWDLH--------- 539 (705)
T ss_pred C---CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc---CCccceeeeeccCCcEEEEEcc---------
Confidence 9 9999999999999999999876543332211 1223566665 8999999999999999999998
Q ss_pred CCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeee
Q 000654 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (1371)
Q Consensus 221 ~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~ 300 (1371)
....+..|.||.+.+.||..++||..|-||+-|.+||.||++.+++.
T Consensus 540 ------------------------nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql--------- 586 (705)
T KOG0639|consen 540 ------------------------NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL--------- 586 (705)
T ss_pred ------------------------cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh---------
Confidence 56778899999999999999999999999999999999999997652
Q ss_pred ceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 301 SSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 301 ~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
....-...|.++-++ +.+|+.|-+++.+-|-..++.....+..|.. -|.++.|.+-|+++++.|.|..+..|...
T Consensus 587 --qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 587 --QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred --hhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCc
Confidence 112234568888877 6899999999999998888888888888888 79999999999999999999999999983
Q ss_pred CCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcC
Q 000654 379 AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1371)
Q Consensus 379 ~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~ 439 (1371)
.+..+|... ....|.+..++.|++++++++.
T Consensus 664 -----------------yGasiFqsk-------------E~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 664 -----------------YGASIFQSK-------------ESSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred -----------------cccceeecc-------------ccCcceeeeeccCceEEEecCC
Confidence 222344322 2356889999999888887643
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.7e-18 Score=188.84 Aligned_cols=275 Identities=15% Similarity=0.196 Sum_probs=205.5
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEE-ECCCeEEEEEeccCCCCCCCCCCccceee
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNL 122 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~-~gd~sV~vwdl~~~~~~~~~~~~~~~v~~ 122 (1371)
..+++||+.+|..+.++++.....-+++..- .+. +++++ .+...+.+|.+....
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l------~~~-----yllsaq~~rp~l~vw~i~k~~-------------- 72 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL------NNE-----YLLSAQLKRPLLHVWEILKKD-------------- 72 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh------chh-----heeeecccCccccccccCchh--------------
Confidence 6799999999998888875312122333322 021 33333 346789999987422
Q ss_pred eeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCC
Q 000654 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1371)
Q Consensus 123 ~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~d 202 (1371)
......--.++|.+++-+| +|.+|+.|+..+.|.+|.+.+|..+..+..|-. .+.++.| +.|+.++++|+.|
T Consensus 73 -~~~q~~v~Pg~v~al~s~n---~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ-~ITcL~f---s~dgs~iiTgskD 144 (476)
T KOG0646|consen 73 -QVVQYIVLPGPVHALASSN---LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQ-SITCLKF---SDDGSHIITGSKD 144 (476)
T ss_pred -hhhhhcccccceeeeecCC---CceEEEeecccCcEEEEEeccccHHHHHHhhcc-ceeEEEE---eCCCcEEEecCCC
Confidence 1111223457899999999 999998888999999999999999887755443 4667776 7899999999999
Q ss_pred CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCC--CCEEEEEeCCCcE
Q 000654 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSA 280 (1371)
Q Consensus 203 g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spd--g~~LaS~s~Dg~V 280 (1371)
|.|.+|.+..-- +. +......+++.+.+|.-+|+.+...+. ..+|+|+|.|+++
T Consensus 145 g~V~vW~l~~lv---------------~a---------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 145 GAVLVWLLTDLV---------------SA---------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred ccEEEEEEEeec---------------cc---------ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence 999999986100 00 011256788999999999999988775 4689999999999
Q ss_pred EEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC---C--------------CcEEE
Q 000654 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---D--------------GKQLK 341 (1371)
Q Consensus 281 riWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~---~--------------g~~l~ 341 (1371)
++||+..+... .-..-+..+.+++.+ +..++.|+++|.|.+.++ . +..+.
T Consensus 201 k~wdlS~g~LL-----------lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 201 KLWDLSLGVLL-----------LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred EEEEeccceee-----------EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 99999998651 223345678899988 589999999999998887 2 13456
Q ss_pred EEeeccC-cCEEEEEEcCCCCEEEEEECCCcEEEEEcCC-CCccccc
Q 000654 342 MIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE 386 (1371)
Q Consensus 342 ~l~~h~~-~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~-~~~~~l~ 386 (1371)
.+.+|.+ .+|+|++++-||.+|++|+.||.|++||+.. ++++++.
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 6778877 5799999999999999999999999999943 4554443
No 123
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=3e-17 Score=174.79 Aligned_cols=270 Identities=11% Similarity=0.159 Sum_probs=191.9
Q ss_pred CccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEee
Q 000654 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (1371)
Q Consensus 65 ~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~ 143 (1371)
...|..|+|| |.. +.++++++ |++||+|+++... . ... +....|.++|++++|+.
T Consensus 27 ~DsIS~l~FS-------P~~---~~~~~A~SWD~tVR~wevq~~g----~--------~~~-ka~~~~~~PvL~v~Wsd- 82 (347)
T KOG0647|consen 27 EDSISALAFS-------PQA---DNLLAAGSWDGTVRIWEVQNSG----Q--------LVP-KAQQSHDGPVLDVCWSD- 82 (347)
T ss_pred ccchheeEec-------ccc---CceEEecccCCceEEEEEecCC----c--------ccc-hhhhccCCCeEEEEEcc-
Confidence 3479999999 532 25665555 9999999998632 0 111 34457889999999999
Q ss_pred cCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCC
Q 000654 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1371)
Q Consensus 144 ~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~ 223 (1371)
+|..+++|+.|+.+++||+.+++. .++..|.. .+..+.+... .....|++|+.|.+|+.||.+
T Consensus 83 --dgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~-pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R------------ 145 (347)
T KOG0647|consen 83 --DGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDA-PVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTR------------ 145 (347)
T ss_pred --CCceEEeeccCCceEEEEccCCCe-eeeeeccc-ceeEEEEecC-CCcceeEecccccceeecccC------------
Confidence 999999999999999999999954 34444433 3445555443 335689999999999999998
Q ss_pred CCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceE
Q 000654 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1371)
Q Consensus 224 ~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~ 303 (1371)
...++.++. -.+.++++.. ...+++.+..++.|.+++++.+... .+ ..
T Consensus 146 ---------------------~~~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te----~k----~~ 193 (347)
T KOG0647|consen 146 ---------------------SSNPVATLQ-LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTE----FK----RI 193 (347)
T ss_pred ---------------------CCCeeeeee-ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcch----hh----hh
Confidence 334444443 2344555443 3457888889999999999876431 11 11
Q ss_pred eecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CC--cEEEEEeeccC--------cCEEEEEEcCCCCEEEEEECCC
Q 000654 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG--KQLKMIKEHIG--------RGIWRCLYDSLSSLLVTAGFDS 370 (1371)
Q Consensus 304 ~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g--~~l~~l~~h~~--------~~V~sl~~spdg~~L~Tgg~Dg 370 (1371)
...-.-.+.|++.. .+..+.|+-+|.+.|..+ .+ +.-.+|+.|+. .+|.+|+|+|.-..|+|+|.||
T Consensus 194 ~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG 273 (347)
T KOG0647|consen 194 ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG 273 (347)
T ss_pred cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCc
Confidence 12233346677665 456699999999999998 44 44557788873 2478899999999999999999
Q ss_pred cEEEEEcCCC-CcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEE
Q 000654 371 AIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1371)
Q Consensus 371 ~I~lwdl~~~-~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t 437 (1371)
++.+||-+.+ .+++ ...+..+|.+.+|+.+|.+++..
T Consensus 274 tf~FWDkdar~kLk~------------------------------s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 274 TFSFWDKDARTKLKT------------------------------SETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eEEEecchhhhhhhc------------------------------cCcCCCccceeEecCCCCEEEEE
Confidence 9999998431 1111 12355789999999999887754
No 124
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.78 E-value=8.1e-18 Score=188.73 Aligned_cols=260 Identities=17% Similarity=0.257 Sum_probs=192.1
Q ss_pred cccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe--E--------EEEEEeecCccEEEEEeeccccccCCC
Q 000654 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--L--------IRPFQVFHGIRLHGISCNFINCTEGSV 83 (1371)
Q Consensus 15 ~h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~--~--------l~~~~~~~~~~I~~i~~s~~~~~~~pd 83 (1371)
.|.+.|+-+..- |. ...++|+++ ++.|.|||..+-. . -..+.+|+. .=+++.|+.. ..
T Consensus 122 ~h~gEVnRaRym--PQ---np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~-----~~ 190 (422)
T KOG0264|consen 122 NHDGEVNRARYM--PQ---NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQ-----QE 190 (422)
T ss_pred cCCccchhhhhC--CC---CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccc-----cc
Confidence 378888888887 75 235566655 5999999985421 1 125667766 3678888833 33
Q ss_pred CcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEE
Q 000654 84 STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1371)
Q Consensus 84 g~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd 163 (1371)
| .++.++.|++|++||+........ ...+...+.+|.+.|.+++|++. +..++++++.|+.+.|||
T Consensus 191 g----~Lls~~~d~~i~lwdi~~~~~~~~--------~~~p~~~~~~h~~~VeDV~~h~~--h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 191 G----TLLSGSDDHTICLWDINAESKEDK--------VVDPKTIFSGHEDVVEDVAWHPL--HEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred e----eEeeccCCCcEEEEeccccccCCc--------cccceEEeecCCcceehhhcccc--chhhheeecCCCeEEEEE
Confidence 3 455555689999999986431111 24556778899999999999993 667899999999999999
Q ss_pred CCCC--eEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000654 164 ISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1371)
Q Consensus 164 ~~~~--~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1371)
++++ +....... +...+.+++|-+. ++.+||+|+.|++|.+||++.
T Consensus 257 ~R~~~~~~~~~~~a-h~~~vn~~~fnp~--~~~ilAT~S~D~tV~LwDlRn----------------------------- 304 (422)
T KOG0264|consen 257 TRSNTSKPSHSVKA-HSAEVNCVAFNPF--NEFILATGSADKTVALWDLRN----------------------------- 304 (422)
T ss_pred cCCCCCCCcccccc-cCCceeEEEeCCC--CCceEEeccCCCcEEEeechh-----------------------------
Confidence 9953 22333333 3445778887433 477899999999999999991
Q ss_pred cccceeeEEEEecccCCEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcccCC------CCceeeeceEeecCCccEEEE
Q 000654 242 QQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDS------DSIEEVGSSVLYGHNARVWDC 314 (1371)
Q Consensus 242 ~~~~~~~~~~l~gH~~~I~~v~~spdg-~~LaS~s~Dg~VriWdl~~~~~~~~------~~~~~~~~~~~~gh~~~I~~l 314 (1371)
-..+++.+.+|+..|++|.|+|.. ..|||.+.|+.+.+||+..-..... ...+.+ +.-.||...|..+
T Consensus 305 ---L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEll--F~HgGH~~kV~Df 379 (422)
T KOG0264|consen 305 ---LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELL--FIHGGHTAKVSDF 379 (422)
T ss_pred ---cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCccee--EEecCcccccccc
Confidence 344788999999999999999965 6789999999999999986433210 011211 3667899999999
Q ss_pred EEc---CCEEEEEeCCCeEEEEeCC
Q 000654 315 CLT---DSFIITAGEDCTCRVWGSD 336 (1371)
Q Consensus 315 ~~s---~~~L~Sgs~Dg~I~VWd~~ 336 (1371)
.|+ +-.|+|+++|+.+.||...
T Consensus 380 sWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 380 SWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCCCCCCeEEEEecCCceEEEeecc
Confidence 998 4689999999999999974
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=187.61 Aligned_cols=256 Identities=18% Similarity=0.235 Sum_probs=197.1
Q ss_pred cEEEEeCCCCc-------ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeecc
Q 000654 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFI 76 (1371)
Q Consensus 5 tV~iWdl~~~~-------h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~ 76 (1371)
-|.+|.+.+.. ..|+|.|++-+ |+ |.+|++|. .+.|++|.+.+|.++..+..|-. .|++|.|+
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~--n~----G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ-~ITcL~fs-- 132 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASS--NL----GYFLLAGTISGNLYLWELSSGILLNVLSAHYQ-SITCLKFS-- 132 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecC--CC----ceEEEeecccCcEEEEEeccccHHHHHHhhcc-ceeEEEEe--
Confidence 46788877654 46789999999 88 88999995 79999999999999988876544 89999999
Q ss_pred ccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC
Q 000654 77 NCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1371)
Q Consensus 77 ~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~ 155 (1371)
.|| ..|+++| ||.|.+|.+..-- +++.....++++.+..|+-+|+++...+ ++...+|+|++.
T Consensus 133 -----~dg----s~iiTgskDg~V~vW~l~~lv------~a~~~~~~~p~~~f~~HtlsITDl~ig~-Gg~~~rl~TaS~ 196 (476)
T KOG0646|consen 133 -----DDG----SHIITGSKDGAVLVWLLTDLV------SADNDHSVKPLHIFSDHTLSITDLQIGS-GGTNARLYTASE 196 (476)
T ss_pred -----CCC----cEEEecCCCccEEEEEEEeec------ccccCCCccceeeeccCcceeEEEEecC-CCccceEEEecC
Confidence 777 5666666 9999999986421 1111113578889999999999999987 223468999999
Q ss_pred CCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcc
Q 000654 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1371)
Q Consensus 156 Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1371)
|.++++||+..+..+.++..+.. +.++.+ +|.+..++.|+.+|.|.+.++..-. ....+.
T Consensus 197 D~t~k~wdlS~g~LLlti~fp~s--i~av~l---Dpae~~~yiGt~~G~I~~~~~~~~~------------~~~~~v--- 256 (476)
T KOG0646|consen 197 DRTIKLWDLSLGVLLLTITFPSS--IKAVAL---DPAERVVYIGTEEGKIFQNLLFKLS------------GQSAGV--- 256 (476)
T ss_pred CceEEEEEeccceeeEEEecCCc--ceeEEE---cccccEEEecCCcceEEeeehhcCC------------cccccc---
Confidence 99999999999999988876653 445555 7889999999999999999887110 000000
Q ss_pred eeeecccccceeeEEEEecccC--CEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEE
Q 000654 236 CFKLQDQQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1371)
Q Consensus 236 ~i~i~~~~~~~~~~~~l~gH~~--~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~ 313 (1371)
..+... .....+..+.||++ .|+|++.+-||..|++|+.||.|.|||+.+.++ ++ ++..-.++|+.
T Consensus 257 ~~k~~~--~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~-----iR-----tl~~~kgpVtn 324 (476)
T KOG0646|consen 257 NQKGRH--EENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC-----IR-----TLQTSKGPVTN 324 (476)
T ss_pred cccccc--cccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH-----HH-----HHhhhccccce
Confidence 011111 13556778899998 999999999999999999999999999998776 33 44445678888
Q ss_pred EEEc
Q 000654 314 CCLT 317 (1371)
Q Consensus 314 l~~s 317 (1371)
+.+.
T Consensus 325 L~i~ 328 (476)
T KOG0646|consen 325 LQIN 328 (476)
T ss_pred eEee
Confidence 8874
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.78 E-value=2e-17 Score=185.65 Aligned_cols=241 Identities=15% Similarity=0.217 Sum_probs=183.7
Q ss_pred eEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC
Q 000654 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1371)
Q Consensus 89 ~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~ 167 (1371)
.++|+.+ .+.+.|||...........+ ...+-..|.||.+.=.++.|++ .....|++++.|++|++||+...
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-----~~~Pdl~L~gH~~eg~glsWn~--~~~g~Lls~~~d~~i~lwdi~~~ 210 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASG-----ECRPDLRLKGHEKEGYGLSWNR--QQEGTLLSGSDDHTICLWDINAE 210 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccc-----cCCCceEEEeeccccccccccc--ccceeEeeccCCCcEEEEecccc
Confidence 4555544 68999999975431111100 1344557789988888899998 34567899999999999999653
Q ss_pred eE------EEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000654 168 SI------ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1371)
Q Consensus 168 ~~------~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1371)
.. .......+...+..++|+.. +..++++.+.|+.+.|||.+++
T Consensus 211 ~~~~~~~~p~~~~~~h~~~VeDV~~h~~--h~~lF~sv~dd~~L~iwD~R~~---------------------------- 260 (422)
T KOG0264|consen 211 SKEDKVVDPKTIFSGHEDVVEDVAWHPL--HEDLFGSVGDDGKLMIWDTRSN---------------------------- 260 (422)
T ss_pred ccCCccccceEEeecCCcceehhhcccc--chhhheeecCCCeEEEEEcCCC----------------------------
Confidence 22 12223344456667777644 4678999999999999999921
Q ss_pred cccceeeEEEEecccCCEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--
Q 000654 242 QQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-- 318 (1371)
Q Consensus 242 ~~~~~~~~~~l~gH~~~I~~v~~sp-dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~-- 318 (1371)
+.++.+...+|.+.|++++|+| ++..|||||.|++|.+||+++...+ + ..+.+|...|..+.|+|
T Consensus 261 ---~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~----l-----h~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 261 ---TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP----L-----HTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred ---CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC----c-----eeccCCCcceEEEEeCCCC
Confidence 2344556779999999999999 5567899999999999999986541 2 48899999999999994
Q ss_pred -CEEEEEeCCCeEEEEeCC--C-------------cEEEEEeeccCcCEEEEEEcCCCCE-EEEEECCCcEEEEEcCC
Q 000654 319 -SFIITAGEDCTCRVWGSD--G-------------KQLKMIKEHIGRGIWRCLYDSLSSL-LVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 319 -~~L~Sgs~Dg~I~VWd~~--g-------------~~l~~l~~h~~~~V~sl~~spdg~~-L~Tgg~Dg~I~lwdl~~ 379 (1371)
..|++++.|+.+.|||++ | +++....+|..+ |..+.|+|+..+ |+++..|+.+.||+...
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k-V~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK-VSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccc-cccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 789999999999999982 2 235677789984 999999998875 67889999999999853
No 127
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=2.1e-16 Score=180.78 Aligned_cols=119 Identities=15% Similarity=0.290 Sum_probs=101.2
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC---CEEEEEeCCCeEEEE
Q 000654 258 SIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVW 333 (1371)
Q Consensus 258 ~I~~v~~sp-dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~---~~L~Sgs~Dg~I~VW 333 (1371)
.|+.+.|.| |...||.+++||.|++|.+..+.... ....+- ..+..|...|+++.|++ +.|++++.|-+|++|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e-~~~tPe--~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE-NEMTPE--KILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCc-ccCCcc--eeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 356677888 67889999999999999998865521 111111 37889999999999994 899999999999999
Q ss_pred eC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 000654 334 GS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1371)
Q Consensus 334 d~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~ 380 (1371)
|+ +++....+.+|.+ .|..++|+|+|+.++|.+.||+|++|.....
T Consensus 706 Dl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred ehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 99 8888889999999 6999999999999999999999999998543
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.6e-17 Score=171.89 Aligned_cols=243 Identities=19% Similarity=0.222 Sum_probs=182.5
Q ss_pred CCEEEEEe-CCcEEEEECCCC---eEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCC
Q 000654 35 LPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELS 109 (1371)
Q Consensus 35 ~~llaaG~-dg~I~Iwd~~sg---~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~ 109 (1371)
++.||+++ |++|+||..... +++.++.+|++ +|..++|... .-| .+||+++ ||.|.||+-..+.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G-PVwqv~wahP-----k~G----~iLAScsYDgkVIiWke~~g~- 91 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG-PVWKVAWAHP-----KFG----TILASCSYDGKVIIWKEENGR- 91 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCC-CeeEEeeccc-----ccC----cEeeEeecCceEEEEecCCCc-
Confidence 55666655 899999998753 57899999988 9999999721 244 6888887 9999999987644
Q ss_pred CCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC--eEEEEEecCCcceEEEEEee
Q 000654 110 PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEVHSPERCLLYSMKLW 187 (1371)
Q Consensus 110 ~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~--~~~~~l~~~~~~~v~s~~~~ 187 (1371)
+........|...|++++|.| ..-|-.|+++++||.|.|.+..+. -...++...+..-+.++.+.
T Consensus 92 ------------w~k~~e~~~h~~SVNsV~wap-heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswa 158 (299)
T KOG1332|consen 92 ------------WTKAYEHAAHSASVNSVAWAP-HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWA 158 (299)
T ss_pred ------------hhhhhhhhhhcccceeecccc-cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeec
Confidence 666677788999999999999 234678999999999999988653 33333433344445566665
Q ss_pred ccCCCC-----------cEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEeccc
Q 000654 188 GDNLEA-----------LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1371)
Q Consensus 188 ~~s~d~-----------~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~ 256 (1371)
+.+..| ..|++|+.|+.|+||+...+ .......+.+|.
T Consensus 159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-------------------------------~w~~e~~l~~H~ 207 (299)
T KOG1332|consen 159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-------------------------------SWKLERTLEGHK 207 (299)
T ss_pred CcCCCccccccCcccccceeeccCCccceeeeecCCc-------------------------------chhhhhhhhhcc
Confidence 443333 57999999999999998821 223344588999
Q ss_pred CCEEEEEEcCCC----CEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeE
Q 000654 257 GSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1371)
Q Consensus 257 ~~I~~v~~spdg----~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I 330 (1371)
+.|+.++|.|.- .++||||.||+|.||....... +... ..+..-...+|.+.|+ ++.|+.++.|..+
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e--~wk~-----tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv 280 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE--PWKK-----TLLEEFPDVVWRVSWSLSGNILAVSGGDNKV 280 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC--cccc-----cccccCCcceEEEEEeccccEEEEecCCcEE
Confidence 999999999964 4799999999999998874322 1111 1344456789999998 8999999999999
Q ss_pred EEEeC--CCcE
Q 000654 331 RVWGS--DGKQ 339 (1371)
Q Consensus 331 ~VWd~--~g~~ 339 (1371)
.+|.- +|+-
T Consensus 281 tlwke~~~Gkw 291 (299)
T KOG1332|consen 281 TLWKENVDGKW 291 (299)
T ss_pred EEEEeCCCCcE
Confidence 99976 5543
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=6.6e-17 Score=170.85 Aligned_cols=300 Identities=16% Similarity=0.254 Sum_probs=212.5
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe------EEEEEE-----ee---cCccEEEEEeecccccc
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT------LIRPFQ-----VF---HGIRLHGISCNFINCTE 80 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~------~l~~~~-----~~---~~~~I~~i~~s~~~~~~ 80 (1371)
|-|.|+++.+. +. .++|+++|. ||.|.+||++... ++.... .| +...|..+.|-|.
T Consensus 42 HgGsvNsL~id--~t---egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~---- 112 (397)
T KOG4283|consen 42 HGGSVNSLQID--LT---EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI---- 112 (397)
T ss_pred CCCccceeeec--cc---cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee----
Confidence 88999999998 64 479999987 8999999997532 122111 11 2346888888732
Q ss_pred CCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcE
Q 000654 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1371)
Q Consensus 81 ~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I 159 (1371)
.. .++.+++ |.+++|||..+-. ....+ ...+.|.+-+++|....--++|+|..|-.|
T Consensus 113 -Dt-----GmFtssSFDhtlKVWDtnTlQ---------------~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 113 -DT-----GMFTSSSFDHTLKVWDTNTLQ---------------EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred -cC-----ceeecccccceEEEeecccce---------------eeEEe-ecCceeehhhcChhhhcceEEEEecCCCcE
Confidence 22 4666655 9999999998632 22222 245778888898865455678899999999
Q ss_pred EEEECCCCeEEEEEecCCcceEEEEEeeccCCCC-cEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceee
Q 000654 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1371)
Q Consensus 160 ~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~-~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~ 238 (1371)
++-|+.+|.....+.+|... +.++.+ +|.. -.|++|+.||.|++||++. ..+.++
T Consensus 171 rLCDi~SGs~sH~LsGHr~~-vlaV~W---sp~~e~vLatgsaDg~irlWDiRr--------------------asgcf~ 226 (397)
T KOG4283|consen 171 RLCDIASGSFSHTLSGHRDG-VLAVEW---SPSSEWVLATGSADGAIRLWDIRR--------------------ASGCFR 226 (397)
T ss_pred EEEeccCCcceeeeccccCc-eEEEEe---ccCceeEEEecCCCceEEEEEeec--------------------ccceeE
Confidence 99999999999998887654 556666 4444 4678899999999999982 112233
Q ss_pred eccccc--ceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCc---cEEE
Q 000654 239 LQDQQH--TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWD 313 (1371)
Q Consensus 239 i~~~~~--~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~---~I~~ 313 (1371)
..+... ....+..-..|.+.|++++|+.++.++++++.|..+++|+...++.. +.+.++..-..... .|.+
T Consensus 227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt----l~~~g~~~~n~~~~~~~~~~~ 302 (397)
T KOG4283|consen 227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT----LREFGPIIHNQTTSFAVHIQS 302 (397)
T ss_pred EeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc----ccccccccccccccceEEEee
Confidence 322221 11222335589999999999999999999999999999999987653 22222101000001 1221
Q ss_pred EEEcCCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 314 CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 314 l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
+. -..++---.++.+.++++ +|..+..+..|.. .|.+.++-|+-..+.+|..|+.|..|..
T Consensus 303 ~~--s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k-~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 303 MD--SDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK-RINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cc--cceEEEEecCCeEEEEEccCceEEEeeecccc-eeeEEeecCchhhhhccccCCccccccc
Confidence 11 234444445689999999 9999999999955 6999999999899999999999999987
No 130
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3e-15 Score=180.16 Aligned_cols=477 Identities=14% Similarity=0.109 Sum_probs=288.1
Q ss_pred CCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEE
Q 000654 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1371)
Q Consensus 82 pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~v 161 (1371)
+|+ +.+....+..|.||...+ +.++..+.+|..+++.+.+.|....-.++.+++.||.|++
T Consensus 26 nD~----k~l~~~~~~~V~VyS~~T---------------g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 26 NDA----KFLFLCTGNFVKVYSTAT---------------GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV 86 (792)
T ss_pred cCC----cEEEEeeCCEEEEEecch---------------HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence 787 677778889999999987 4566689999999999999983222257789999999999
Q ss_pred EECCCCeEEEEEecCCcce--EEEEEeeccCCCCcEEEEEeCCCeE-EEEEcccCCccccCCCCCCCCCCCCCCCcceee
Q 000654 162 WDISNSSIILEVHSPERCL--LYSMKLWGDNLEALRIASGTIYNEI-IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1371)
Q Consensus 162 Wd~~~~~~~~~l~~~~~~~--v~s~~~~~~s~d~~~Lasgs~dg~I-~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~ 238 (1371)
||...+..++.+...-+.. .+..++.. ....+..+..+..+ .-.... .... .-+
T Consensus 87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~---~s~~~~~s~~~~~~~~~~s~~-----------------~~~q---~~~ 143 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLPVHALVYKPAQAD---ISANVYVSVEDYSILTTFSKK-----------------LSKQ---SSR 143 (792)
T ss_pred ecCCCcEEEEEEecCCceeEEEechhHhC---ccceeEeecccceeeeecccc-----------------cccc---eee
Confidence 9999999988776443322 22111111 11111111111110 000000 0000 000
Q ss_pred ecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-
Q 000654 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (1371)
Q Consensus 239 i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s- 317 (1371)
.............+.+|.. -..|.+++.+.+...+- +..+.+|+....... .. .. ..-..|...+++.+++
T Consensus 144 ~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~-~~-~~----~~~~~Htf~~t~~~~sp 215 (792)
T KOG1963|consen 144 FVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKH-TS-SR----DITVHHTFNITCVALSP 215 (792)
T ss_pred eEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEE-eeeEEEEEeccccee-ec-cc----hhhhhhcccceeEEecc
Confidence 0000000111111223322 35677777777655543 447889988774321 00 00 1334567778889998
Q ss_pred -CCEEEEEeCCCeEEEEeCCC-----cEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCcc
Q 000654 318 -DSFIITAGEDCTCRVWGSDG-----KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEA 391 (1371)
Q Consensus 318 -~~~L~Sgs~Dg~I~VWd~~g-----~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~ 391 (1371)
++++++|..||.|.+|.--+ .....+.-|.. .|.+++|+++|.+|++||..|.+.+|.+.... +++
T Consensus 216 n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqf------ 287 (792)
T KOG1963|consen 216 NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQF------ 287 (792)
T ss_pred ccceEEEeccCCcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-ccc------
Confidence 68999999999999997622 34566788888 59999999999999999999999999995321 111
Q ss_pred ccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEE-EEEcCCcEEEEEeecCCCceeEEeEeecCC------
Q 000654 392 KEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY-IATNHGYLYHTKLCDMDSVNWNKILQVSEG------ 464 (1371)
Q Consensus 392 ~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~ll-v~t~~G~i~~~~l~~~~~~~w~~i~~~~~~------ 464 (1371)
+..-.++|..+.++||+.++ +...+.++..++..+..... ..++-..
T Consensus 288 -----------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~---tIsgi~~~~~~~k 341 (792)
T KOG1963|consen 288 -----------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS---TISGIKPPTPSTK 341 (792)
T ss_pred -----------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh---hccCccCCCcccc
Confidence 11234678999999998654 45678888877765533211 0111100
Q ss_pred ---cc-EEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeecc-Cc-ccceeEEEEeecCCCcEE
Q 000654 465 ---MP-IICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSA-GI-ERQLLGTYWCKSLGHRFI 538 (1371)
Q Consensus 465 ---~~-I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~-~~-~~~il~~~~~~s~d~~~L 538 (1371)
.. ...+.+ .+..+.++.-...|.|++||+.+.....++.....-.. +. ..++.......+..|.++
T Consensus 342 ~~~~~l~t~~~i--------dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~m 413 (792)
T KOG1963|consen 342 TRPQSLTTGVSI--------DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWM 413 (792)
T ss_pred ccccccceeEEE--------cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEE
Confidence 00 011111 13356788888899999999987765543322111111 11 223333334445568888
Q ss_pred EEEcC--------C--CcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecC--CCEEEEecCCCeEEE
Q 000654 539 FTADP--------K--GRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE--DEVLFCGDLRGNLVL 606 (1371)
Q Consensus 539 ~s~s~--------d--g~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spd--g~lLatGs~dGtI~I 606 (1371)
+|... | -.+++|-..... .+..+......+|+..+.+.++.+. ....++++.||.++|
T Consensus 414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~----------kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~Ki 483 (792)
T KOG1963|consen 414 ATLEARIDKFNFFDGEVSLKFWQYNPNS----------KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKI 483 (792)
T ss_pred EEeeeeehhhhccCceEEEEEEEEcCCc----------ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEE
Confidence 87542 2 246788766432 2344555556689888887777643 338999999999999
Q ss_pred EEcCccccccccccccccccccccccccc--CCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEec
Q 000654 607 FPLLRDLLNDKSVALHVEVSPLNYFKGAH--GISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (1371)
Q Consensus 607 wd~~~~~~~~~~~~~~~~l~p~~~~~g~h--g~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~ 671 (1371)
|-+.+....... ....+.+.++ .+..+++.+|+ .| ..+++.|-|++|.+|+...
T Consensus 484 W~~~~~~n~~k~-------~s~W~c~~i~sy~k~~i~a~~fs---~d-Gslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 484 WVFTDDSNIYKK-------SSNWTCKAIGSYHKTPITALCFS---QD-GSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEecccccCcC-------ccceEEeeeeccccCcccchhhc---CC-CcEEEEecCCEEEEecCCC
Confidence 998654221111 1111111111 24678888888 34 4799999999999999877
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=9.1e-17 Score=171.43 Aligned_cols=262 Identities=15% Similarity=0.231 Sum_probs=192.2
Q ss_pred ecCccEEEEEeeccccccCCCCcceeeEEEEE-CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEE
Q 000654 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1371)
Q Consensus 63 ~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~-gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fs 141 (1371)
|++ -||++.|. +-| +.+|++ +|++|+|||.+.+. -.+.+....+.|.+.|+.|.|.
T Consensus 12 h~D-lihdVs~D-------~~G----RRmAtCSsDq~vkI~d~~~~s-----------~~W~~Ts~Wrah~~Si~rV~WA 68 (361)
T KOG2445|consen 12 HKD-LIHDVSFD-------FYG----RRMATCSSDQTVKIWDSTSDS-----------GTWSCTSSWRAHDGSIWRVVWA 68 (361)
T ss_pred Ccc-eeeeeeec-------ccC----ceeeeccCCCcEEEEeccCCC-----------CceEEeeeEEecCCcEEEEEec
Confidence 444 69999998 888 455554 59999999975432 1377788889999999999998
Q ss_pred eecCCCcEEEEEECCCcEEEEECCCCe-------E-EEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccC
Q 000654 142 KVCNGNRSLAIGCSDNSIRVWDISNSS-------I-ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1371)
Q Consensus 142 p~~~dg~~Latgs~Dg~I~vWd~~~~~-------~-~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~ 213 (1371)
+ ++=|+.+|+++.|++++||.-.... - ..+.-...+..++.+.|.+. .-|..+|+++.||.++||+...
T Consensus 69 h-PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~-hlGLklA~~~aDG~lRIYEA~d- 145 (361)
T KOG2445|consen 69 H-PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPK-HLGLKLAAASADGILRIYEAPD- 145 (361)
T ss_pred C-ccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecch-hcceEEEEeccCcEEEEEecCC-
Confidence 6 3468999999999999999763211 1 11222345666888888554 3588999999999999998761
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceee-EEEEecccCCEEEEEEcCC---CCEEEEEeCC-----CcEEEEE
Q 000654 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN-LFRLVGHEGSIFRIEWSSC---GSKLVSVSDD-----RSARIWE 284 (1371)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~-~~~l~gH~~~I~~v~~spd---g~~LaS~s~D-----g~VriWd 284 (1371)
..+++-|..+...+. +.....+..+..||.|+|. ..+||.|+++ +.++||.
T Consensus 146 --------------------p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 146 --------------------PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred --------------------ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence 112222332222211 1122357788999999984 3578888776 5799998
Q ss_pred ccCCcccCCCCceeeeceEeecCCccEEEEEEcC------CEEEEEeCCCeEEEEeCCC---------------------
Q 000654 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG--------------------- 337 (1371)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~------~~L~Sgs~Dg~I~VWd~~g--------------------- 337 (1371)
....... ...+ ..+.+|+.+|++++|.| .+||+|+.|| |+||.+..
T Consensus 206 ~~e~~rK----w~kv--a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v 278 (361)
T KOG2445|consen 206 YNENGRK----WLKV--AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV 278 (361)
T ss_pred ecCCcce----eeee--hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence 8765421 2323 37789999999999985 4799999999 99999842
Q ss_pred cEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 338 ~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
+.+..+..|.+ .||.+.|+-.|..|++.|.||.||+|...
T Consensus 279 ~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 279 EKVSELDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeeeccCCCC-ceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 23456778998 59999999999999999999999999873
No 132
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.1e-17 Score=197.13 Aligned_cols=287 Identities=15% Similarity=0.190 Sum_probs=212.8
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCC----eEEEEEEeec--CccEEEEEeeccccccCCCCcceeeE
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----TLIRPFQVFH--GIRLHGISCNFINCTEGSVSTRVTFE 90 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg----~~l~~~~~~~--~~~I~~i~~s~~~~~~~pdg~~~~~~ 90 (1371)
..+..+|+.. ++ ..-++++....+.||..... ++...+.... ...+..++|.. -+ +.+
T Consensus 39 k~~~nAIs~n--r~----~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~------~~----~Nl 102 (839)
T KOG0269|consen 39 KAKANAISVN--RD----INQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ------LY----SNL 102 (839)
T ss_pred ccccceEeec--CC----cceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhccccc------ch----hhh
Confidence 4567888888 76 55666666678888877542 2222221111 12344455551 12 257
Q ss_pred EEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE
Q 000654 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1371)
Q Consensus 91 la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~ 169 (1371)
||++. .|.|.+||+.... +.+.+..+..|...|++++|++ ....+|++|+.||+|++||++..+.
T Consensus 103 IAT~s~nG~i~vWdlnk~~------------rnk~l~~f~EH~Rs~~~ldfh~--tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSI------------RNKLLTVFNEHERSANKLDFHS--TEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred heeecCCCcEEEEecCccc------------cchhhhHhhhhccceeeeeecc--CCccEEEecCCCceEEEEeeecccc
Confidence 77776 7999999998522 3466778889999999999998 2557899999999999999988777
Q ss_pred EEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeE
Q 000654 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1371)
Q Consensus 170 ~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~ 249 (1371)
..++.+... .+..+.|.+ ..+..++++...|.+++||++ ...+..
T Consensus 169 ~~t~~~nSE-SiRDV~fsp--~~~~~F~s~~dsG~lqlWDlR--------------------------------qp~r~~ 213 (839)
T KOG0269|consen 169 KSTFRSNSE-SIRDVKFSP--GYGNKFASIHDSGYLQLWDLR--------------------------------QPDRCE 213 (839)
T ss_pred cccccccch-hhhceeecc--CCCceEEEecCCceEEEeecc--------------------------------CchhHH
Confidence 766665332 234455532 247789999999999999998 245566
Q ss_pred EEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC---CEEEEEe-
Q 000654 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAG- 325 (1371)
Q Consensus 250 ~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~---~~L~Sgs- 325 (1371)
..+.+|.++|.++.|+|++.+|||||.|+.|+|||..+.+.. . ........+|..++|.| .+|++++
T Consensus 214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-----~----~~tInTiapv~rVkWRP~~~~hLAtcsm 284 (839)
T KOG0269|consen 214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-----P----KHTINTIAPVGRVKWRPARSYHLATCSM 284 (839)
T ss_pred HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc-----c----eeEEeecceeeeeeeccCccchhhhhhc
Confidence 778899999999999999999999999999999999976542 1 12334457889999984 6788875
Q ss_pred -CCCeEEEEeC--CCcEEEEEeeccCcCEEEEEEcC-CCCEEEEEECCCcEEEEEcC
Q 000654 326 -EDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 326 -~Dg~I~VWd~--~g~~l~~l~~h~~~~V~sl~~sp-dg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.|-.|+|||+ .--+..++..|.. .++.++|.. |...|.+++.||+|....++
T Consensus 285 v~dtsV~VWDvrRPYIP~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 285 VVDTSVHVWDVRRPYIPYATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cccceEEEEeeccccccceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhh
Confidence 5788999999 4457788999998 699999954 45588999999998776653
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.8e-16 Score=167.71 Aligned_cols=276 Identities=17% Similarity=0.230 Sum_probs=193.2
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC----eEEEEEEeecCccEEEEEeeccccccCCCCcceeeE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg----~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~ 90 (1371)
|..-|.++.|. +- |+.+|+|+ |.+|+|||..+. .+-...+.|.+ .|..|.|... .=| ..
T Consensus 12 h~DlihdVs~D--~~----GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-Si~rV~WAhP-----EfG----qv 75 (361)
T KOG2445|consen 12 HKDLIHDVSFD--FY----GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-SIWRVVWAHP-----EFG----QV 75 (361)
T ss_pred Ccceeeeeeec--cc----CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-cEEEEEecCc-----ccc----ce
Confidence 55669999999 76 77777777 899999996432 45567778777 8999999732 224 57
Q ss_pred EEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE
Q 000654 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1371)
Q Consensus 91 la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~ 169 (1371)
+|+++ |++++||.=....... ...+.....++......|++|.|.| ..-|-.||+++.||.+|||+.-+.-.
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~------~~~~Wv~~ttl~DsrssV~DV~FaP-~hlGLklA~~~aDG~lRIYEA~dp~n 148 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEA------HGRRWVRRTTLVDSRSSVTDVKFAP-KHLGLKLAAASADGILRIYEAPDPMN 148 (361)
T ss_pred EEEEecCCceeeeeeccccccc------ccceeEEEEEeecCCcceeEEEecc-hhcceEEEEeccCcEEEEEecCCccc
Confidence 77777 9999999864211000 1113666778888889999999999 23466899999999999999865432
Q ss_pred EE------EEe------cCCcceEEEEEeeccCCCCcEEEEEeCC-----CeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000654 170 IL------EVH------SPERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1371)
Q Consensus 170 ~~------~l~------~~~~~~v~s~~~~~~s~d~~~Lasgs~d-----g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1371)
+. +++ +......+++.+...-....+||.|+.+ +.++||....+
T Consensus 149 Ls~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~------------------- 209 (361)
T KOG2445|consen 149 LSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN------------------- 209 (361)
T ss_pred cccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC-------------------
Confidence 22 222 1122334555554333345678888755 58888887611
Q ss_pred CcceeeecccccceeeEEEEecccCCEEEEEEcCCC----CEEEEEeCCCcEEEEEccCCccc-------CC-----CCc
Q 000654 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWK-------DS-----DSI 296 (1371)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg----~~LaS~s~Dg~VriWdl~~~~~~-------~~-----~~~ 296 (1371)
..+...+..+.+|..+|+.|+|.|+- ..||+++.|| |+||.+...... .+ ..+
T Consensus 210 ----------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v 278 (361)
T KOG2445|consen 210 ----------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV 278 (361)
T ss_pred ----------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence 11344566788999999999999963 4799999999 999999853311 00 112
Q ss_pred eeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeCC----CcEEEEEeec
Q 000654 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD----GKQLKMIKEH 346 (1371)
Q Consensus 297 ~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~----g~~l~~l~~h 346 (1371)
+.+ ..+.+|.+.||.+.|+ +..|.+.|.||.+|+|..+ -++...++..
T Consensus 279 ~~v--s~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 279 EKV--SELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred EEe--eeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEecc
Confidence 333 2678999999999998 8999999999999999862 2444444433
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.5e-16 Score=168.78 Aligned_cols=279 Identities=18% Similarity=0.247 Sum_probs=196.6
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-CCEEEEEeCCCeEEEE
Q 000654 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1371)
Q Consensus 255 H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-~~~L~Sgs~Dg~I~VW 333 (1371)
.+..|.+|.|+|.+..|+.++.||++++||+..... .....|..++.+++|. ...+++|+.||.|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-----------~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-----------KLKFKHGAPLLDCAFADESTIVTGGLDGQVRRY 80 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-----------hhheecCCceeeeeccCCceEEEeccCceEEEE
Confidence 357899999999999999999999999999988644 2667899999999998 5899999999999999
Q ss_pred eCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCcccee
Q 000654 334 GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (1371)
Q Consensus 334 d~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~ 413 (1371)
|+++.....+..|.. +|+++.+++....+++||.|++|++||...+... ...
T Consensus 81 Dln~~~~~~igth~~-~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~-----------------~~~---------- 132 (323)
T KOG1036|consen 81 DLNTGNEDQIGTHDE-GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV-----------------GTF---------- 132 (323)
T ss_pred EecCCcceeeccCCC-ceEEEEeeccCCeEEEcccCccEEEEeccccccc-----------------ccc----------
Confidence 997666777777888 7999999998889999999999999999631100 000
Q ss_pred eccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCC
Q 000654 414 LTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGK 493 (1371)
Q Consensus 414 ~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~d 493 (1371)
.....|.++....+ .+++++.+.++..|++....... +...-.-...+.|+.+.+ .+.=.++++-|
T Consensus 133 ---d~~kkVy~~~v~g~-~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~p--------n~eGy~~sSie 198 (323)
T KOG1036|consen 133 ---DQGKKVYCMDVSGN-RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVP--------NGEGYVVSSIE 198 (323)
T ss_pred ---ccCceEEEEeccCC-EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEec--------CCCceEEEeec
Confidence 01124555555433 68888888888876665433211 222222234555666533 34446888899
Q ss_pred CcEEEEEEcCCccccceeeeeeeccCcc--ccee--EEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCcccee
Q 000654 494 GNMTIVRVVGDVHTPQLSFTFTWSAGIE--RQLL--GTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNV 569 (1371)
Q Consensus 494 G~I~iwdi~~~~~~~~~~~~~~~~~~~~--~~il--~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l 569 (1371)
|.|.+=.++........+..+..+.... ..+. .-.+.|+|-..+|+||+.||.|.+||+..... +
T Consensus 199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr-----------l 267 (323)
T KOG1036|consen 199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR-----------L 267 (323)
T ss_pred ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh-----------h
Confidence 9998866665433333333333332222 2111 11246788888899999999999999875321 1
Q ss_pred eeeeeeecccCCcEEEEEeecCCCEEEEecCC
Q 000654 570 FLVAEFSSCFGARIMCLDASFEDEVLFCGDLR 601 (1371)
Q Consensus 570 ~l~~~~~~~h~~~Itsl~~spdg~lLatGs~d 601 (1371)
. ++ ......|.+++|+.||.+||+|+.-
T Consensus 268 ~---q~-~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 268 K---QL-AKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred h---hc-cCCCCceEEEEeccCCCeEEEEech
Confidence 1 11 1346679999999999999998763
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.75 E-value=1.9e-15 Score=175.26 Aligned_cols=270 Identities=11% Similarity=0.085 Sum_probs=187.6
Q ss_pred CCCccEEEEeCCCCcc------cCcEEEEEEEecCCCCCCCCEE-EEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEE
Q 000654 1 MGKKDLSEWRLDVGQY------LGEISALCFVHLPSHLSSLPFL-LAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1371)
Q Consensus 1 s~D~tV~iWdl~~~~h------~~~Vtavafs~~pd~~~~~~ll-aaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~ 72 (1371)
+.|++|++||+.+++. ...+.+++|+ |+ ++++ +++. ++.|++||..+++.+..+..+. .+..++
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~--~d----g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~ 79 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQRPRGITLS--KD----GKLLYVCASDSDTIQVIDLATGEVIGTLPSGP--DPELFA 79 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCCCCCceEEC--CC----CCEEEEEECCCCeEEEEECCCCcEEEeccCCC--CccEEE
Confidence 4689999999988762 2346789999 98 6665 4544 6999999999998877666433 356788
Q ss_pred eeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEE
Q 000654 73 CNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1371)
Q Consensus 73 ~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~La 151 (1371)
|+ |+++ .++++.+ ++.+++||+... +.+..+.. ...+.+++|+| ++.+++
T Consensus 80 ~~-------~~g~---~l~~~~~~~~~l~~~d~~~~---------------~~~~~~~~-~~~~~~~~~~~---dg~~l~ 130 (300)
T TIGR03866 80 LH-------PNGK---ILYIANEDDNLVTVIDIETR---------------KVLAEIPV-GVEPEGMAVSP---DGKIVV 130 (300)
T ss_pred EC-------CCCC---EEEEEcCCCCeEEEEECCCC---------------eEEeEeeC-CCCcceEEECC---CCCEEE
Confidence 88 8883 4445544 799999999752 23333332 23467899999 999999
Q ss_pred EEECCC-cEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEE-EeCCCeEEEEEcccCCccccCCCCCCCCCCC
Q 000654 152 IGCSDN-SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1371)
Q Consensus 152 tgs~Dg-~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Las-gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~ 229 (1371)
++..++ .+.+||..+++....+..... ...+.+ ++++.+|++ +..++.|++||+.+
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~---s~dg~~l~~~~~~~~~v~i~d~~~----------------- 188 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQR--PRFAEF---TADGKELWVSSEIGGTVSVIDVAT----------------- 188 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCCC--ccEEEE---CCCCCEEEEEcCCCCEEEEEEcCc-----------------
Confidence 888765 467789988877655433222 223444 678887754 45689999999982
Q ss_pred CCCCcceeeecccccceeeEEEEecc-------cCCEEEEEEcCCCCEEEE-EeCCCcEEEEEccCCcccCCCCceeeec
Q 000654 230 SSSDFKCFKLQDQQHTAVNLFRLVGH-------EGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1371)
Q Consensus 230 ~~~~~~~i~i~~~~~~~~~~~~l~gH-------~~~I~~v~~spdg~~LaS-~s~Dg~VriWdl~~~~~~~~~~~~~~~~ 301 (1371)
.+.+..+..+ ......++|+|++++++. .+.++.+.+||+.+.+. .
T Consensus 189 ----------------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~-----~----- 242 (300)
T TIGR03866 189 ----------------RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV-----L----- 242 (300)
T ss_pred ----------------ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE-----E-----
Confidence 2222222211 112346889999998544 45567899999987544 1
Q ss_pred eEeecCCccEEEEEEc--CCEEEEE-eCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcC
Q 000654 302 SVLYGHNARVWDCCLT--DSFIITA-GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358 (1371)
Q Consensus 302 ~~~~gh~~~I~~l~~s--~~~L~Sg-s~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~sp 358 (1371)
....+...+++++|+ +++|+++ +.++.|+|||+ +++++..+.... ..+.++|+|
T Consensus 243 -~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~ 300 (300)
T TIGR03866 243 -DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR--LPWGVVVRP 300 (300)
T ss_pred -EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc--ccceeEeCC
Confidence 122344578899998 5677776 56999999999 788888887653 469998875
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.7e-16 Score=175.90 Aligned_cols=286 Identities=13% Similarity=0.203 Sum_probs=209.3
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEE-EeCCcEEEEECCC--CeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLA-GSGSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaa-G~dg~I~Iwd~~s--g~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la 92 (1371)
..++|++|.|+ |. .++|++ |.|++++||.+.. ...+..+. +...+|.+..|. |+|. ..++
T Consensus 212 s~~~I~sv~FH--p~----~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~-------p~G~---~~i~ 274 (514)
T KOG2055|consen 212 SHGGITSVQFH--PT----APLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFA-------PNGH---SVIF 274 (514)
T ss_pred CcCCceEEEec--CC----CceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeec-------CCCc---eEEE
Confidence 45789999999 97 555555 5599999999853 34556655 355699999999 8883 4666
Q ss_pred EEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCC-cEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEE
Q 000654 93 LFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH-WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1371)
Q Consensus 93 ~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~-~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~ 170 (1371)
++| .+.+..||+.+.. ...+..+.++.. .+...+++| ++++|+..+..|.|.+....++..+
T Consensus 275 ~s~rrky~ysyDle~ak-------------~~k~~~~~g~e~~~~e~FeVSh---d~~fia~~G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAK-------------VTKLKPPYGVEEKSMERFEVSH---DSNFIAIAGNNGHIHLLHAKTKELI 338 (514)
T ss_pred ecccceEEEEeeccccc-------------cccccCCCCcccchhheeEecC---CCCeEEEcccCceEEeehhhhhhhh
Confidence 666 6789999998643 445555666653 577788888 9999999999999999999999888
Q ss_pred EEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEE
Q 000654 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1371)
Q Consensus 171 ~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~ 250 (1371)
..++... .+..+.| +.++..|++.+.+|+|.+||++ ....++
T Consensus 339 ~s~KieG--~v~~~~f---sSdsk~l~~~~~~GeV~v~nl~---------------------------------~~~~~~ 380 (514)
T KOG2055|consen 339 TSFKIEG--VVSDFTF---SSDSKELLASGGTGEVYVWNLR---------------------------------QNSCLH 380 (514)
T ss_pred heeeecc--EEeeEEE---ecCCcEEEEEcCCceEEEEecC---------------------------------CcceEE
Confidence 7776443 3445555 4577888888889999999998 445555
Q ss_pred EEecccCCE--EEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEe-
Q 000654 251 RLVGHEGSI--FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG- 325 (1371)
Q Consensus 251 ~l~gH~~~I--~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs- 325 (1371)
++.. .+.| ++++.++++.+||+||+.|.|.|||..+... ....+++. .+..-...|++++|+ .+.|+.++
T Consensus 381 rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~--s~~PkPik--~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 381 RFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA--STNPKPIK--TVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred EEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhc--cCCCCchh--hhhhhheeeeeeeeCcchhhhhhhhh
Confidence 5542 3334 4567778999999999999999999765432 11123332 556667789999998 36666665
Q ss_pred -CCCeEEEEeC-CCcEEEEEee---ccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 326 -EDCTCRVWGS-DGKQLKMIKE---HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 326 -~Dg~I~VWd~-~g~~l~~l~~---h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.+..+|+-.+ +-.....+.. .-+ .|+|++|+|.+.+|+.|..+|.+.+|.+.
T Consensus 456 ~~knalrLVHvPS~TVFsNfP~~n~~vg-~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 456 VKKNALRLVHVPSCTVFSNFPTSNTKVG-HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccccceEEEeccceeeeccCCCCCCccc-ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 4567887776 3333332322 223 49999999999999999999999999873
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.75 E-value=5.6e-16 Score=163.90 Aligned_cols=232 Identities=18% Similarity=0.267 Sum_probs=165.0
Q ss_pred CccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEee
Q 000654 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (1371)
Q Consensus 65 ~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~ 143 (1371)
+..|..+.+-+ ..| ++++++| ||.|.|||++.....+...--.+++.........+|.-.|.++.|-|+
T Consensus 43 gGsvNsL~id~------teg----rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 43 GGSVNSLQIDL------TEG----RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred CCccceeeecc------ccc----eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence 34788888772 344 4555554 999999999853211111000011111122334578889999999995
Q ss_pred cCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCC
Q 000654 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1371)
Q Consensus 144 ~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~ 223 (1371)
|...+.+++-|.++++||..+-+....++.+.. +|+-++.+-.....++|+|+.+-+|++.|+.
T Consensus 113 --DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~--VYshamSp~a~sHcLiA~gtr~~~VrLCDi~------------ 176 (397)
T KOG4283|consen 113 --DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGK--VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA------------ 176 (397)
T ss_pred --cCceeecccccceEEEeecccceeeEEeecCce--eehhhcChhhhcceEEEEecCCCcEEEEecc------------
Confidence 666788999999999999999888777765543 5655443323345688999999999999999
Q ss_pred CCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCE-EEEEeCCCcEEEEEccCCcccCCCCceeeece
Q 000654 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1371)
Q Consensus 224 ~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~-LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~ 302 (1371)
.+...+.+.||.+.|.+|.|+|...+ |+|||.||.||+||++.... +..
T Consensus 177 ---------------------SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg----cf~----- 226 (397)
T KOG4283|consen 177 ---------------------SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG----CFR----- 226 (397)
T ss_pred ---------------------CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccc----eeE-----
Confidence 78888999999999999999998876 68999999999999976311 111
Q ss_pred EeecCCccEEEEEEcCCEEEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 303 ~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.+..|... ....+++-..|.++ |.+++|..++.++++.+.|..+++|+..
T Consensus 227 ~lD~hn~k-------------------------~~p~~~~n~ah~gk-vngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 227 VLDQHNTK-------------------------RPPILKTNTAHYGK-VNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred EeecccCc-------------------------cCccccccccccce-eeeeeecccchhhhhccCccceEEeecc
Confidence 33333210 01112233457884 9999999999999999999999999983
No 138
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.7e-14 Score=172.11 Aligned_cols=482 Identities=12% Similarity=0.100 Sum_probs=272.2
Q ss_pred EEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEE
Q 000654 21 SALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (1371)
Q Consensus 21 tavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~ 100 (1371)
..-.|+ +| .++++...+..|.||...+|.++..+..+.. ++..+.+. |........+..+-+|.|+
T Consensus 20 ~~avfS--nD----~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a-~l~s~~~~-------~~~~~~~~~~~~sl~G~I~ 85 (792)
T KOG1963|consen 20 SPAVFS--ND----AKFLFLCTGNFVKVYSTATGECITSLEDHTA-PLTSVIVL-------PSSENANYLIVCSLDGTIR 85 (792)
T ss_pred cccccc--cC----CcEEEEeeCCEEEEEecchHhhhhhcccccC-ccceeeec-------CCCccceEEEEEecCccEE
Confidence 345688 88 8999999999999999999999998876655 88888887 3321112445555699999
Q ss_pred EEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeec-----------CCCcEEEEEECCCcEEE--EECCCC
Q 000654 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-----------NGNRSLAIGCSDNSIRV--WDISNS 167 (1371)
Q Consensus 101 vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~-----------~dg~~Latgs~Dg~I~v--Wd~~~~ 167 (1371)
+||.... .++.++..+ -++.++.+.|.- .+...+.+.+.+..... +.+.+-
T Consensus 86 vwd~~~~---------------~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~ 149 (792)
T KOG1963|consen 86 VWDWSDG---------------ELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATF 149 (792)
T ss_pred EecCCCc---------------EEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeec
Confidence 9999853 233333222 223333332200 01111221211111111 111100
Q ss_pred e-EEEEEe-cC--CcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccc
Q 000654 168 S-IILEVH-SP--ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1371)
Q Consensus 168 ~-~~~~l~-~~--~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~ 243 (1371)
. ....+. .. .++++ + ++.+.+.+.. .+..+.+|+...+..
T Consensus 150 ~~~~~d~~~~~~~~~~I~----~---~~~ge~~~i~-~~~~~~~~~v~~~~~---------------------------- 193 (792)
T KOG1963|consen 150 DSAKGDFLKEHQEPKSIV----D---NNSGEFKGIV-HMCKIHIYFVPKHTK---------------------------- 193 (792)
T ss_pred cccchhhhhhhcCCccEE----E---cCCceEEEEE-EeeeEEEEEecccce----------------------------
Confidence 0 000000 00 12222 1 3444444333 356677887762110
Q ss_pred cceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEE
Q 000654 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFI 321 (1371)
Q Consensus 244 ~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L 321 (1371)
.......-..|.-.+++.+++|+++++|++..||.|.+|.--.... .. .. ...+.-|...|.+++|+ +.+|
T Consensus 194 -~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-~~--~t---~t~lHWH~~~V~~L~fS~~G~~L 266 (792)
T KOG1963|consen 194 -HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-DS--ET---CTLLHWHHDEVNSLSFSSDGAYL 266 (792)
T ss_pred -eeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-cc--cc---ceEEEecccccceeEEecCCceE
Confidence 0000011124667799999999999999999999999997544111 00 11 13677899999999998 7999
Q ss_pred EEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC-CCcccccCCCccccccCCcc
Q 000654 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTE 399 (1371)
Q Consensus 322 ~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~-~~~~~l~~~~~~~~~~~~~~ 399 (1371)
+|||..|.+.+|.+ +++ .+-+..-.. +|..+.++||+.+.+....|..|.+..... ....++.+-.. .
T Consensus 267 lSGG~E~VLv~Wq~~T~~-kqfLPRLgs-~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~------~-- 336 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGK-KQFLPRLGS-PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP------P-- 336 (792)
T ss_pred eecccceEEEEEeecCCC-cccccccCC-eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC------C--
Confidence 99999999999999 555 333333344 899999999999999999999999988732 11122222110 0
Q ss_pred EEEeeecCCccceeeccCCCccEEEEEEec-CCcEEEEEcCCcEEEEEeecCCCceeEEeEeec-CCcc----EEEEeec
Q 000654 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMP----IICMDLL 473 (1371)
Q Consensus 400 i~s~~~~~~~~~~~~~~~~~~~V~~lafs~-d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~-~~~~----I~~ld~~ 473 (1371)
.|+. -....+-.+.+++.| .+..+..+..|.+..++++......-.++...+ .... +....+.
T Consensus 337 -----~~~~------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~ 405 (792)
T KOG1963|consen 337 -----TPST------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVA 405 (792)
T ss_pred -----Cccc------cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeeh
Confidence 0000 001123345556666 344555666777776666655443211121111 1111 1111111
Q ss_pred CCCCCCCCCCCCEEEEEe--------CC--CcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCc-EEEEEc
Q 000654 474 SNEPKYPCGIDDWVALGD--------GK--GNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHR-FIFTAD 542 (1371)
Q Consensus 474 ~~~~~~s~~~~~lla~gs--------~d--G~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~-~L~s~s 542 (1371)
. ...+.++++.. .| -.+++|-.......-.. ... ...+++....+.+...+... ..++++
T Consensus 406 ~------~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L--~T~-I~~PH~~~~vat~~~~~~rs~~~vta~ 476 (792)
T KOG1963|consen 406 R------SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFIL--NTK-INNPHGNAFVATIFLNPTRSVRCVTAS 476 (792)
T ss_pred h------hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEE--EEE-EecCCCceeEEEEEecCcccceeEEec
Confidence 1 12256666642 23 35778887654332221 111 22334433332223333333 789999
Q ss_pred CCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCc
Q 000654 543 PKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1371)
Q Consensus 543 ~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~ 611 (1371)
.||.+++|.+.+.....+ ....+.......| |...+++++|+.||.+|++|. +++|.+||..+
T Consensus 477 ~dg~~KiW~~~~~~n~~k--~~s~W~c~~i~sy---~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~ 539 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYK--KSSNWTCKAIGSY---HKTPITALCFSQDGSLLAVSF-DDTITIWDYDT 539 (792)
T ss_pred cCCeEEEEEEecccccCc--CccceEEeeeecc---ccCcccchhhcCCCcEEEEec-CCEEEEecCCC
Confidence 999999999865433111 1122322323333 788999999999998887765 55999999886
No 139
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.7e-16 Score=165.48 Aligned_cols=299 Identities=20% Similarity=0.224 Sum_probs=193.9
Q ss_pred eeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE-----E-EEEecCCcceEEEEEeeccCCCCc-EE
Q 000654 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-----I-LEVHSPERCLLYSMKLWGDNLEAL-RI 196 (1371)
Q Consensus 124 ~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~-----~-~~l~~~~~~~v~s~~~~~~s~d~~-~L 196 (1371)
.+..|++|.+.|++++|+. ||++|||++.|++|++|++..... + ..++.. ....+.| .||-. ++
T Consensus 78 ~~~~LKgH~~~vt~~~FsS---dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~F---apDc~s~v 148 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSS---DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVF---APDCKSVV 148 (420)
T ss_pred hhhhhhccCCceeeeEEcC---CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEE---CCCcceEE
Confidence 4567899999999999999 999999999999999999975322 1 111111 1223444 45544 55
Q ss_pred EEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC
Q 000654 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1371)
Q Consensus 197 asgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~ 276 (1371)
++....+.+++|.+...+. +.. .....-|+ ....-.-|.-.|..+-....+.+|+|++.
T Consensus 149 v~~~~g~~l~vyk~~K~~d-------------G~~--~~~~v~~D------~~~f~~kh~v~~i~iGiA~~~k~imsas~ 207 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTD-------------GSG--SHHFVHID------NLEFERKHQVDIINIGIAGNAKYIMSASL 207 (420)
T ss_pred EEEccCCEEEEEEeeeccc-------------CCC--Cccccccc------ccccchhcccceEEEeecCCceEEEEecC
Confidence 5666778899998762110 000 00000011 01112246667777777788899999999
Q ss_pred CCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC----CC-----cEEEEEee
Q 000654 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS----DG-----KQLKMIKE 345 (1371)
Q Consensus 277 Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~----~g-----~~l~~l~~ 345 (1371)
|..|.+|++.. +. ++ ........-+.++.+ +.++++++..-.++||+. +| ..+..+++
T Consensus 208 dt~i~lw~lkG-q~-----L~-----~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 208 DTKICLWDLKG-QL-----LQ-----SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred CCcEEEEecCC-ce-----ee-----eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 99999999984 33 22 333333344455666 689999999999999997 33 23567899
Q ss_pred ccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-----CcccccCCCccccccCCccEEEeeecCCccceeecc-CCC
Q 000654 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-----LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTD-SKS 419 (1371)
Q Consensus 346 h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~-----~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~-~~~ 419 (1371)
|.. +|..++|+|+...++|.+.||++|+||++-+ ....+..-. .++. ...
T Consensus 277 H~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-----------------------~pl~aag~ 332 (420)
T KOG2096|consen 277 HQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS-----------------------APLHAAGS 332 (420)
T ss_pred chh-heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC-----------------------cchhhcCC
Confidence 999 7999999999999999999999999998421 111111000 0111 122
Q ss_pred ccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEE
Q 000654 420 EYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (1371)
Q Consensus 420 ~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iw 499 (1371)
+++ .++.+|.+..|+.+....+..+. .+.+.-..-++.-+...|.++.. .++++++++.+ |..++++
T Consensus 333 ~p~-RL~lsP~g~~lA~s~gs~l~~~~---se~g~~~~~~e~~h~~~Is~is~--------~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 333 EPV-RLELSPSGDSLAVSFGSDLKVFA---SEDGKDYPELEDIHSTTISSISY--------SSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred Cce-EEEeCCCCcEEEeecCCceEEEE---cccCccchhHHHhhcCceeeEEe--------cCCCcEEeeec-ceeeeee
Confidence 333 78899999988887666655332 22222112223334677888776 35567777766 5577776
Q ss_pred E
Q 000654 500 R 500 (1371)
Q Consensus 500 d 500 (1371)
.
T Consensus 400 ~ 400 (420)
T KOG2096|consen 400 R 400 (420)
T ss_pred c
Confidence 5
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.73 E-value=5.4e-15 Score=171.46 Aligned_cols=267 Identities=14% Similarity=0.139 Sum_probs=181.3
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCC
Q 000654 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQ 113 (1371)
Q Consensus 36 ~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~ 113 (1371)
.+++++. ++.|++||+.+++.+..+..+. .+.+++|+ |+++ .++++.+ ++.|++||....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~-------~dg~---~l~~~~~~~~~v~~~d~~~~------ 63 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLS-------KDGK---LLYVCASDSDTIQVIDLATG------ 63 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC--CCCceEEC-------CCCC---EEEEEECCCCeEEEEECCCC------
Confidence 4555655 7999999999999888887533 47789999 8883 4445544 799999998752
Q ss_pred CCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEE-ECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCC
Q 000654 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1371)
Q Consensus 114 ~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latg-s~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d 192 (1371)
+....+..+.+ +..++|+| +++.++++ +.|+.|++||+.+++.+..+..... ..++.+ +++
T Consensus 64 ---------~~~~~~~~~~~-~~~~~~~~---~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~---~~d 125 (300)
T TIGR03866 64 ---------EVIGTLPSGPD-PELFALHP---NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE--PEGMAV---SPD 125 (300)
T ss_pred ---------cEEEeccCCCC-ccEEEECC---CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC--cceEEE---CCC
Confidence 23333444433 56788998 88877554 5689999999998887776653322 344555 788
Q ss_pred CcEEEEEeCCC-eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEE
Q 000654 193 ALRIASGTIYN-EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1371)
Q Consensus 193 ~~~Lasgs~dg-~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~L 271 (1371)
+.+++++..++ .+.+||.. +......+. ....+..++|+|++++|
T Consensus 126 g~~l~~~~~~~~~~~~~d~~---------------------------------~~~~~~~~~-~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTK---------------------------------TYEIVDNVL-VDQRPRFAEFTADGKEL 171 (300)
T ss_pred CCEEEEEecCCCeEEEEeCC---------------------------------CCeEEEEEE-cCCCccEEEECCCCCEE
Confidence 99999888765 46677876 233332222 22345779999999988
Q ss_pred E-EEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCc--cEEEEEEc--CCEE-EEEeCCCeEEEEeC-CCcEEEEEe
Q 000654 272 V-SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--RVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIK 344 (1371)
Q Consensus 272 a-S~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~--~I~~l~~s--~~~L-~Sgs~Dg~I~VWd~-~g~~l~~l~ 344 (1371)
+ ++..++.|++||+.+++. ...+.......+.. ....++|+ ++++ ++.+.++.+.+||. +++.+..+.
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 246 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKV-----IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL 246 (300)
T ss_pred EEEcCCCCEEEEEEcCccee-----eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 5 445699999999988654 22111000000111 23457777 4554 44456778999999 666665553
Q ss_pred eccCcCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCC
Q 000654 345 EHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQA 379 (1371)
Q Consensus 345 ~h~~~~V~sl~~spdg~~L~Tg-g~Dg~I~lwdl~~ 379 (1371)
+.. .+++++|+|++++|+++ +.++.|++||+..
T Consensus 247 -~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 247 -VGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred -eCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 333 58999999999998876 5699999999954
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=5.6e-17 Score=191.08 Aligned_cols=286 Identities=13% Similarity=0.126 Sum_probs=192.2
Q ss_pred cEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe----EEEEEecCCcceEEE-EEeeccCCCCcEEEEEeCCCeEEEE
Q 000654 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYS-MKLWGDNLEALRIASGTIYNEIIVW 208 (1371)
Q Consensus 134 ~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~----~~~~l~~~~~~~v~s-~~~~~~s~d~~~Lasgs~dg~I~vW 208 (1371)
.+.+|..++ +-..|+.++. ..++||.+.... +....... ....++ ..+.+...+.++||+++..|.|.+|
T Consensus 41 ~~nAIs~nr---~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~k-qn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 41 KANAISVNR---DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTK-QNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred ccceEeecC---CcceeEEecc-cceeeEeeCcccCCcceeeecccc-cceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 456666667 6667777664 457777764322 11111111 122232 2222225577899999999999999
Q ss_pred EcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCC-CCEEEEEeCCCcEEEEEccC
Q 000654 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRA 287 (1371)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spd-g~~LaS~s~Dg~VriWdl~~ 287 (1371)
|+.. ....+.+..|..|+..++++.|++- ..+|+|||.||+|++||++.
T Consensus 116 dlnk------------------------------~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 116 DLNK------------------------------SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred ecCc------------------------------cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 9981 0124556678899999999999984 56899999999999999998
Q ss_pred CcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeC--CCcEEEEEeeccCcCEEEEEEcCCCCE
Q 000654 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (1371)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~--~g~~l~~l~~h~~~~V~sl~~spdg~~ 362 (1371)
.... .++.+....|.+++|+ +..++++.+.|.+++||+ ..++...+..|.+ +|.++.|+|++.+
T Consensus 166 ~~S~----------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV~c~nwhPnr~~ 234 (839)
T KOG0269|consen 166 KKSK----------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PVLCLNWHPNREW 234 (839)
T ss_pred cccc----------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ceEEEeecCCCce
Confidence 7652 3777888899999998 589999999999999999 5678888999999 8999999999999
Q ss_pred EEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcE-EEEEcCCc
Q 000654 363 LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL-YIATNHGY 441 (1371)
Q Consensus 363 L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~l-lv~t~~G~ 441 (1371)
|||||+|+.|+||+..+.... ++..+ ....+|.+++|-|+... |++++-..
T Consensus 235 lATGGRDK~vkiWd~t~~~~~---------------~~~tI-------------nTiapv~rVkWRP~~~~hLAtcsmv~ 286 (839)
T KOG0269|consen 235 LATGGRDKMVKIWDMTDSRAK---------------PKHTI-------------NTIAPVGRVKWRPARSYHLATCSMVV 286 (839)
T ss_pred eeecCCCccEEEEeccCCCcc---------------ceeEE-------------eecceeeeeeeccCccchhhhhhccc
Confidence 999999999999999642211 11111 12356899999998754 44433333
Q ss_pred EEEEEeecCCCce-eEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEE
Q 000654 442 LYHTKLCDMDSVN-WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (1371)
Q Consensus 442 i~~~~l~~~~~~~-w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi 501 (1371)
-+.+.+|+.+..- -...+. .+...+..+ .+ ...+...+.+++.||.+..-.+
T Consensus 287 dtsV~VWDvrRPYIP~~t~~-eH~~~vt~i--~W-----~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIPYATFL-EHTDSVTGI--AW-----DSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred cceEEEEeeccccccceeee-ccCccccce--ec-----cCCCceeeEeecCccHHHHhhh
Confidence 3333455433211 001111 112222222 11 1245567777777777665433
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.1e-18 Score=197.51 Aligned_cols=243 Identities=16% Similarity=0.272 Sum_probs=196.2
Q ss_pred CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCcccee
Q 000654 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVN 121 (1371)
Q Consensus 43 dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~ 121 (1371)
.-.++|||... +-.|.. .|.++... ..+ +.++.+| +..+-+|.+...
T Consensus 13 ~t~Lr~~~~~~------~~~hsa-av~~lk~~-------~s~----r~~~~Gg~~~k~~L~~i~kp-------------- 60 (825)
T KOG0267|consen 13 ATKLRVWDTRE------FVAHSA-AVGCLKIR-------KSS----RSLVTGGEDEKVNLWAIGKP-------------- 60 (825)
T ss_pred eeccccccchh------hhhhhh-hhceeeee-------ccc----eeeccCCCceeeccccccCC--------------
Confidence 46778888542 223333 45555543 333 5666666 677889988642
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeC
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~ 201 (1371)
..+..+.+|..+|.++.|++ +..+|+.|+.+|+|++||++.++.++++.++... +.++.| +|-+.+.++|+.
T Consensus 61 -~~i~S~~~hespIeSl~f~~---~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~-~~sv~f---~P~~~~~a~gSt 132 (825)
T KOG0267|consen 61 -NAITSLTGHESPIESLTFDT---SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN-ITSVDF---HPYGEFFASGST 132 (825)
T ss_pred -chhheeeccCCcceeeecCc---chhhhcccccCCceeeeehhhhhhhhhhhccccC-cceeee---ccceEEeccccc
Confidence 23445889999999999999 8899999999999999999999998888877543 345666 677899999999
Q ss_pred CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 000654 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1371)
Q Consensus 202 dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~Vr 281 (1371)
|..+++||.+ ...+.+.+.+|...|..++|+|+|++++++++|.+++
T Consensus 133 dtd~~iwD~R---------------------------------k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 133 DTDLKIWDIR---------------------------------KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred cccceehhhh---------------------------------ccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 9999999998 5667888999999999999999999999999999999
Q ss_pred EEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEEEEEeCCCeEEEEeCC-CcEEEEEeeccCcCEEEEEEcC
Q 000654 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDS 358 (1371)
Q Consensus 282 iWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~I~VWd~~-g~~l~~l~~h~~~~V~sl~~sp 358 (1371)
|||+..++. .. .+.+|...+..+.|++ -.+++|+.|+++++||+. -+.+........ +|.+.+|+|
T Consensus 180 i~d~~agk~-----~~-----ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~-~v~~~~fn~ 248 (825)
T KOG0267|consen 180 IWDLTAGKL-----SK-----EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETD-GVRSLAFNP 248 (825)
T ss_pred eeccccccc-----cc-----ccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccC-CceeeeecC
Confidence 999988776 22 7788999999999984 577899999999999994 566666666655 699999999
Q ss_pred CCCEEEEEECC
Q 000654 359 LSSLLVTAGFD 369 (1371)
Q Consensus 359 dg~~L~Tgg~D 369 (1371)
++..+++|..+
T Consensus 249 ~~~~~~~G~q~ 259 (825)
T KOG0267|consen 249 DGKIVLSGEQI 259 (825)
T ss_pred CceeeecCchh
Confidence 99999888765
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.1e-16 Score=173.68 Aligned_cols=280 Identities=14% Similarity=0.215 Sum_probs=202.8
Q ss_pred ccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeec
Q 000654 66 IRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1371)
Q Consensus 66 ~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~ 144 (1371)
.+|.++.|+ |.. .+++++| |++++||.++-.. -..++.+.--.-+|.+.+|.|
T Consensus 214 ~~I~sv~FH-------p~~----plllvaG~d~~lrifqvDGk~-------------N~~lqS~~l~~fPi~~a~f~p-- 267 (514)
T KOG2055|consen 214 GGITSVQFH-------PTA----PLLLVAGLDGTLRIFQVDGKV-------------NPKLQSIHLEKFPIQKAEFAP-- 267 (514)
T ss_pred CCceEEEec-------CCC----ceEEEecCCCcEEEEEecCcc-------------ChhheeeeeccCccceeeecC--
Confidence 379999999 765 5666666 9999999998432 234445544557899999999
Q ss_pred CCCc-EEEEEECCCcEEEEECCCCeEEE--EEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCC
Q 000654 145 NGNR-SLAIGCSDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (1371)
Q Consensus 145 ~dg~-~Latgs~Dg~I~vWd~~~~~~~~--~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~ 221 (1371)
+|. .+++++.-.....||+.+.+... .+.+.+...+.. +.-++++.+|+..+..|.|.+-...
T Consensus 268 -~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~---FeVShd~~fia~~G~~G~I~lLhak---------- 333 (514)
T KOG2055|consen 268 -NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMER---FEVSHDSNFIAIAGNNGHIHLLHAK---------- 333 (514)
T ss_pred -CCceEEEecccceEEEEeeccccccccccCCCCcccchhhe---eEecCCCCeEEEcccCceEEeehhh----------
Confidence 888 88999999999999998876532 222333222222 2337899999999999999998877
Q ss_pred CCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeec
Q 000654 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1371)
Q Consensus 222 ~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~ 301 (1371)
++..+..++ -++.|..+.|+.|++.|+.++.+|.|.+||++...+ +.
T Consensus 334 -----------------------T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~-----~~---- 380 (514)
T KOG2055|consen 334 -----------------------TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC-----LH---- 380 (514)
T ss_pred -----------------------hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce-----EE----
Confidence 444555554 568899999999999999999999999999998755 22
Q ss_pred eEeecCCccE--EEEE--EcCCEEEEEeCCCeEEEEeCC-------CcEEEEEeeccCcCEEEEEEcCCCCEEEEEEC--
Q 000654 302 SVLYGHNARV--WDCC--LTDSFIITAGEDCTCRVWGSD-------GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-- 368 (1371)
Q Consensus 302 ~~~~gh~~~I--~~l~--~s~~~L~Sgs~Dg~I~VWd~~-------g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~-- 368 (1371)
.+.-.+.| ++++ ..+.+||+|+..|.|-|||.+ -+++..+..-.. .|+++.|++|+.+|+.++.
T Consensus 381 --rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~ 457 (514)
T KOG2055|consen 381 --RFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT-AITSLQFNHDAQILAIASRVK 457 (514)
T ss_pred --EEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe-eeeeeeeCcchhhhhhhhhcc
Confidence 22222333 3344 348999999999999999962 356777666666 6999999999999887775
Q ss_pred CCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEE-cCCcEEEEEe
Q 000654 369 DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKL 447 (1371)
Q Consensus 369 Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t-~~G~i~~~~l 447 (1371)
+..+|+-.+.. ..+|+- .|.. +..-+.|+|++|+|.+.+++.+ ..|++.+|++
T Consensus 458 knalrLVHvPS------------------~TVFsN-fP~~-------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 458 KNALRLVHVPS------------------CTVFSN-FPTS-------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ccceEEEeccc------------------eeeecc-CCCC-------CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 67888877732 112211 1211 2344679999999988777665 5677776654
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.72 E-value=4e-16 Score=180.33 Aligned_cols=304 Identities=20% Similarity=0.258 Sum_probs=193.9
Q ss_pred EEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEE
Q 000654 184 MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE 263 (1371)
Q Consensus 184 ~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~ 263 (1371)
..|........+|+.+..+|.|.++|....... .....+.....|...|+.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr---------------------------~ee~~lk~~~aH~nAifDl~ 107 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFR---------------------------LEERQLKKPLAHKNAIFDLK 107 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcc---------------------------hhhhhhcccccccceeEeec
Confidence 334333445678999999999999998721111 12333456678999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeC--CCc
Q 000654 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGK 338 (1371)
Q Consensus 264 ~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~--~g~ 338 (1371)
|-|....|++++.|.++++||+...+. ++...+.||...|.+++|. +..|++|+.||.|.|||+ ++.
T Consensus 108 wapge~~lVsasGDsT~r~Wdvk~s~l--------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~ 179 (720)
T KOG0321|consen 108 WAPGESLLVSASGDSTIRPWDVKTSRL--------VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV 179 (720)
T ss_pred cCCCceeEEEccCCceeeeeeecccee--------ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch
Confidence 999778899999999999999998765 2213589999999999998 589999999999999998 320
Q ss_pred -------------------E-------EEEEeeccCcCEEE---EEEcCCCCEEEEEEC-CCcEEEEEcCCCCcccccCC
Q 000654 339 -------------------Q-------LKMIKEHIGRGIWR---CLYDSLSSLLVTAGF-DSAIKVHQFQAFLPGSLESH 388 (1371)
Q Consensus 339 -------------------~-------l~~l~~h~~~~V~s---l~~spdg~~L~Tgg~-Dg~I~lwdl~~~~~~~l~~~ 388 (1371)
+ +..-+.+.. .|.+ +.+..|...||++|. |+.|++||++......-.+.
T Consensus 180 d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~-ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep 258 (720)
T KOG0321|consen 180 DALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN-TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP 258 (720)
T ss_pred hhHHHHhhhhhccccCCCCCCchhhccccccccccC-ceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC
Confidence 0 111112333 3555 555567889999888 99999999953211000000
Q ss_pred CccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCC-cEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccE
Q 000654 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPI 467 (1371)
Q Consensus 389 ~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~-~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I 467 (1371)
..... .+.. ......+.++.....| .+++...++.||+|++......- ...+.+. .+
T Consensus 259 ~~~~~-----------~~t~-------skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP-~~~~sg~---~~ 316 (720)
T KOG0321|consen 259 RGSDK-----------YPTH-------SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP-VAEFSGK---LN 316 (720)
T ss_pred CcccC-----------ccCc-------ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc-hhhccCc---cc
Confidence 00000 0000 1112234555555545 57777889999988775543211 1111111 11
Q ss_pred EEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcE
Q 000654 468 ICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRL 547 (1371)
Q Consensus 468 ~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I 547 (1371)
...-+.. ..++++..|++|+.|...++|.+.+...-+.. ...+......+.|+.++....+ +++.|-++
T Consensus 317 ~sf~vks----~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~------l~Ght~eVt~V~w~pS~~t~v~-TcSdD~~~ 385 (720)
T KOG0321|consen 317 SSFYVKS----ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL------LLGHTREVTTVRWLPSATTPVA-TCSDDFRV 385 (720)
T ss_pred ceeeeee----ecCCCCceEeccCCCcceeeeeecCccCChhh------hhCcceEEEEEeeccccCCCce-eeccCcce
Confidence 1111111 11478899999999999999999875533221 1122233444456666665555 45999999
Q ss_pred EEEeCCCCC
Q 000654 548 KLWQLCDPF 556 (1371)
Q Consensus 548 ~lWdi~~~~ 556 (1371)
++|++..+.
T Consensus 386 kiW~l~~~l 394 (720)
T KOG0321|consen 386 KIWRLSNGL 394 (720)
T ss_pred EEEeccCch
Confidence 999997554
No 145
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.71 E-value=3.7e-16 Score=180.66 Aligned_cols=328 Identities=14% Similarity=0.166 Sum_probs=197.1
Q ss_pred EEEEEcC---CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEe
Q 000654 260 FRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (1371)
Q Consensus 260 ~~v~~sp---dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd 334 (1371)
++..|++ ....|+.+.+||.|.++|....... .++-.......|...|.++.|. ...|++++.|.++++||
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr----~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR----LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc----hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee
Confidence 4466665 3457899999999999998765431 1111112667899999999998 47899999999999999
Q ss_pred C-CCcEEEE--EeeccCcCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCcc
Q 000654 335 S-DGKQLKM--IKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE 410 (1371)
Q Consensus 335 ~-~g~~l~~--l~~h~~~~V~sl~~spdg~-~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~ 410 (1371)
+ .++++.. +.+|.+ .|.+++|.|... .|+|||.||.|.|||++-.....++. +...+
T Consensus 129 vk~s~l~G~~~~~GH~~-SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~-------------~~~~~----- 189 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTG-SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEE-------------FDNRI----- 189 (720)
T ss_pred eccceeecceeeccccc-ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHH-------------Hhhhh-----
Confidence 9 6666655 889999 699999999755 78999999999999994321111100 00000
Q ss_pred ceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEE
Q 000654 411 QIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (1371)
Q Consensus 411 ~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~g 490 (1371)
...|...- .|. .....+...|. .........|..+- +.++..||++
T Consensus 190 ----~~~~n~~p-----tps---------------kp~~kr~~k~k-A~s~ti~ssvTvv~---------fkDe~tlaSa 235 (720)
T KOG0321|consen 190 ----YGRHNTAP-----TPS---------------KPLKKRIRKWK-AASNTIFSSVTVVL---------FKDESTLASA 235 (720)
T ss_pred ----hccccCCC-----CCC---------------chhhccccccc-cccCceeeeeEEEE---------Eeccceeeec
Confidence 00000000 000 00000111120 00000011122222 2556778887
Q ss_pred eC-CCcEEEEEEcCCcccccee--eeeeeccCcccceeE-EEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCcc
Q 000654 491 DG-KGNMTIVRVVGDVHTPQLS--FTFTWSAGIERQLLG-TYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKT 566 (1371)
Q Consensus 491 s~-dG~I~iwdi~~~~~~~~~~--~~~~~~~~~~~~il~-~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~ 566 (1371)
+. |+.|+|||+.......... ....+... .....+ +.++....|.+|++...|+.|++|++.....
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~--------- 305 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI--------- 305 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccCc-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc---------
Confidence 77 9999999998755432211 01111111 111111 1233344568888777899999999985431
Q ss_pred ceeeeeeeeecccCCc-EEEEEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccccccccccCCcCeEEEEE
Q 000654 567 NNVFLVAEFSSCFGAR-IMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSV 645 (1371)
Q Consensus 567 ~~l~l~~~~~~~h~~~-Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f 645 (1371)
...+.|....... -..-..+||+.+|++|+.|...++|.+++.. .|...+. .|. -.||.|+|
T Consensus 306 ---sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e------------~~~~~l~-Ght-~eVt~V~w 368 (720)
T KOG0321|consen 306 ---SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE------------APPALLL-GHT-REVTTVRW 368 (720)
T ss_pred ---CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc------------CChhhhh-Ccc-eEEEEEee
Confidence 1111211000001 1122357999999999999999999998741 1222222 333 57999999
Q ss_pred eecCCCceEEEEEcCCCcEEEEEEecCC
Q 000654 646 AKLRSNQTEIRSTGGDGCICYLEYDKDR 673 (1371)
Q Consensus 646 ~~~~~~~~~L~T~g~DG~v~iw~l~~~~ 673 (1371)
.++. -.-++|+++|-.+++|++..+.
T Consensus 369 ~pS~--~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 369 LPSA--TTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred cccc--CCCceeeccCcceEEEeccCch
Confidence 9643 3458999999999999996653
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=1.4e-15 Score=163.77 Aligned_cols=323 Identities=12% Similarity=0.151 Sum_probs=220.1
Q ss_pred ccCcEEEEEEEecCCC-CCCCCEEEEEeCCcEEEEECCCC---eEEEEEEee-cCccEEEEEeeccccccCCCCcceeeE
Q 000654 16 YLGEISALCFVHLPSH-LSSLPFLLAGSGSQVLLYDLEAG---TLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFE 90 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~-~~~~~llaaG~dg~I~Iwd~~sg---~~l~~~~~~-~~~~I~~i~~s~~~~~~~pdg~~~~~~ 90 (1371)
|..+|.+++|. +-. -..-..+|+..++.+.+|++... ..++.+... +....+.++|+.+ ..+++ .+
T Consensus 37 ~~~~I~gv~fN--~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd----~~~~~---p~ 107 (385)
T KOG1034|consen 37 HNKPIFGVAFN--SFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYD----SNTGN---PF 107 (385)
T ss_pred CCCccceeeee--hhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEec----CCCCC---ee
Confidence 66789999998 410 01124556666789999998643 334444322 2346778888833 13332 56
Q ss_pred EEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE
Q 000654 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1371)
Q Consensus 91 la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~ 169 (1371)
+|++| -|.|+|.|+.. .+....+.+|.+.|+.+.|.| .+.++|++++.|.+|++|++++..+
T Consensus 108 la~~G~~GvIrVid~~~---------------~~~~~~~~ghG~sINeik~~p--~~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVS---------------GQCSKNYRGHGGSINEIKFHP--DRPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred EEeecceeEEEEEecch---------------hhhccceeccCccchhhhcCC--CCCcEEEEecCCceEEEEeccCCeE
Confidence 77776 69999999975 456677889999999999999 2457899999999999999999999
Q ss_pred EEEEec--CCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccccee
Q 000654 170 ILEVHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1371)
Q Consensus 170 ~~~l~~--~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~ 247 (1371)
+..+.+ .++..+.|+.| +.++.++++++.|.+|++|++...+......-....++...... +-.....-
T Consensus 171 v~VfGG~egHrdeVLSvD~---~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p------fpt~~~~f 241 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDF---SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP------FPTPKTHF 241 (385)
T ss_pred EEEecccccccCcEEEEEE---cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc------CCcccccc
Confidence 988864 34566888888 88999999999999999999984333222111111122221110 00000011
Q ss_pred eE-EEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCccc------CCCCceeeeceEeecCCccEEEEEEc---
Q 000654 248 NL-FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK------DSDSIEEVGSSVLYGHNARVWDCCLT--- 317 (1371)
Q Consensus 248 ~~-~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~------~~~~~~~~~~~~~~gh~~~I~~l~~s--- 317 (1371)
+. ....-|...|-|+.|- |.+++|-|-++.|..|........ ...+...+ ..+.-....||-+.|.
T Consensus 242 p~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~--~~~~~~~c~iWfirf~~d~ 317 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTIL--GEFDYPMCDIWFIRFAFDP 317 (385)
T ss_pred ccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeee--eEeccCccceEEEEEeecH
Confidence 11 1334588889999885 478999999999999998322111 00111111 1444456789999887
Q ss_pred -CCEEEEEeCCCeEEEEeC-CCcE--EEEEee-ccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 318 -DSFIITAGEDCTCRVWGS-DGKQ--LKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 318 -~~~L~Sgs~Dg~I~VWd~-~g~~--l~~l~~-h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
.++||.|.+.|.+.+||+ ...+ ..++.. -.++.|...+|+.|+.+|+...+|++|.-||.
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 489999999999999999 3322 222322 23446999999999999999999999999985
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=8.7e-16 Score=171.48 Aligned_cols=285 Identities=16% Similarity=0.220 Sum_probs=192.8
Q ss_pred CCEEEEEe--C--CcEEEEECCCCeEEEEEEeecCc----cEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEec
Q 000654 35 LPFLLAGS--G--SQVLLYDLEAGTLIRPFQVFHGI----RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELN 105 (1371)
Q Consensus 35 ~~llaaG~--d--g~I~Iwd~~sg~~l~~~~~~~~~----~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~ 105 (1371)
..+++|+- + .++.+|=..... ..+.+|++. .-.|+.|..........| .++|++. +..|.|||+.
T Consensus 137 DnlIl~ar~eddvs~LEvYVyn~~e--~nlYvHHD~ilpafPLC~ewld~~~~~~~~g----NyvAiGtmdp~IeIWDLD 210 (463)
T KOG0270|consen 137 DNLILCARNEDDVSYLEVYVYNEEE--ENLYVHHDFILPAFPLCIEWLDHGSKSGGAG----NYVAIGTMDPEIEIWDLD 210 (463)
T ss_pred CcEEEEeeccCCceEEEEEEEcCCC--cceeEecceeccCcchhhhhhhcCCCCCCCc----ceEEEeccCceeEEeccc
Confidence 47888876 2 444444333322 123334431 234555552211112223 4677766 8999999998
Q ss_pred cCCCCCCCCCCc----------cceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEec
Q 000654 106 FELSPNSQYQPE----------TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1371)
Q Consensus 106 ~~~~~~~~~~~~----------~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~ 175 (1371)
... +.-|. +....+.-....+|++.|.++.|+. .-.+.||+|+.|.+|++||+.++++...+..
T Consensus 211 I~d----~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~--~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 211 IVD----AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR--NFRNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred ccc----ccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc--ccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 532 11111 0001122223458999999999986 2457899999999999999999999888874
Q ss_pred CCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecc
Q 000654 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1371)
Q Consensus 176 ~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1371)
++..+.++.|++. ...+|++|+.|++|.+.|++. .......-..
T Consensus 285 -~~k~Vq~l~wh~~--~p~~LLsGs~D~~V~l~D~R~---------------------------------~~~s~~~wk~ 328 (463)
T KOG0270|consen 285 -HGKKVQTLEWHPY--EPSVLLSGSYDGTVALKDCRD---------------------------------PSNSGKEWKF 328 (463)
T ss_pred -cCCceeEEEecCC--CceEEEeccccceEEeeeccC---------------------------------ccccCceEEe
Confidence 4456778888654 567999999999999999981 0001011123
Q ss_pred cCCEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEE
Q 000654 256 EGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCR 331 (1371)
Q Consensus 256 ~~~I~~v~~spdg-~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~ 331 (1371)
.+.|-.++|.|.. ..++++.+||+|+-+|++....+ + ..+..|...|.+++++ +.+++|++.|++++
T Consensus 329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~----v-----wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP----V-----WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc----e-----eEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 4678899999865 45777889999999999986431 2 4888999999999998 78999999999999
Q ss_pred EEeCCCcEEEEEeec---cCcCEEEEEEcCCCC-EEEEEECCCcEEEEEc
Q 000654 332 VWGSDGKQLKMIKEH---IGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 332 VWd~~g~~l~~l~~h---~~~~V~sl~~spdg~-~L~Tgg~Dg~I~lwdl 377 (1371)
+|++.+..-.....| -++ ..|.++.|+-. +|+.||..+.+++||+
T Consensus 400 lw~~~~~~~~~v~~~~~~~~r-l~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKLGR-LHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred EEeecCCCCcccccccccccc-eeecccCCCcceEEEecCccceEEEeec
Confidence 999943222222222 232 55667777755 6788888889999998
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.3e-15 Score=174.57 Aligned_cols=293 Identities=16% Similarity=0.229 Sum_probs=213.4
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|.+-|.+|... |. |.+|++|+ ||+|+||.+.+|.++.+++. .+ .|.+|+|+ |.++ ..+||++
T Consensus 399 Htg~Vr~iSvd--p~----G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~-~I~~vaw~-------P~~~--~~vLAvA 461 (733)
T KOG0650|consen 399 HTGLVRSISVD--PS----GEWLASGSDDGTVRIWEIATGRCVRTVQF-DS-EIRSVAWN-------PLSD--LCVLAVA 461 (733)
T ss_pred cCCeEEEEEec--CC----cceeeecCCCCcEEEEEeecceEEEEEee-cc-eeEEEEec-------CCCC--ceeEEEE
Confidence 78889999999 87 89999999 59999999999999999884 44 69999999 5542 1455555
Q ss_pred CCCeEEEEEeccCC-----------CCC-CCCCCccc-eee---------eeeeeccCCCCcEEEEEEEeecCCCcEEEE
Q 000654 95 GEKRVKLFELNFEL-----------SPN-SQYQPETC-VNL---------SLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1371)
Q Consensus 95 gd~sV~vwdl~~~~-----------~~~-~~~~~~~~-v~~---------~~~~~l~gh~~~I~~v~fsp~~~dg~~Lat 152 (1371)
-+..+.|.+...+. ... ..-.|+.. +.+ .-+...-.|...|..+.|+. .|.||++
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr---kGDYlat 538 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR---KGDYLAT 538 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec---CCceEEE
Confidence 55556666654321 000 00111110 000 01223335788999999998 9999998
Q ss_pred EEC---CCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCC
Q 000654 153 GCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1371)
Q Consensus 153 gs~---Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~ 229 (1371)
... ...|.|..+.......-+. ..+..+..+.|++ ...+|+.++ -..|+|||+.
T Consensus 539 V~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHP---s~p~lfVaT-q~~vRiYdL~------------------ 595 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHP---SKPYLFVAT-QRSVRIYDLS------------------ 595 (733)
T ss_pred eccCCCcceEEEEecccccccCchh-hcCCceeEEEecC---CCceEEEEe-ccceEEEehh------------------
Confidence 755 4578888887665443332 2344566677754 445666665 5789999997
Q ss_pred CCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCc
Q 000654 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1371)
Q Consensus 230 ~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~ 309 (1371)
....+..+.....+|..++.+|.|..|+.++.|+.+..+|+.-...+ .+ .+.-|..
T Consensus 596 ---------------kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP----yk-----~lr~H~~ 651 (733)
T KOG0650|consen 596 ---------------KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP----YK-----TLRLHEK 651 (733)
T ss_pred ---------------HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch----hH-----Hhhhhhh
Confidence 33444445556678999999999999999999999999999865332 22 7888999
Q ss_pred cEEEEEEcC--CEEEEEeCCCeEEEEeC---C----C---cEEEEEeeccCc---CEEEEEEcCCCCEEEEEECCCcEEE
Q 000654 310 RVWDCCLTD--SFIITAGEDCTCRVWGS---D----G---KQLKMIKEHIGR---GIWRCLYDSLSSLLVTAGFDSAIKV 374 (1371)
Q Consensus 310 ~I~~l~~s~--~~L~Sgs~Dg~I~VWd~---~----g---~~l~~l~~h~~~---~V~sl~~spdg~~L~Tgg~Dg~I~l 374 (1371)
.+.+++|++ .++++|+.||++.|+-- + . -+++.+++|... +|..+.|+|...+|+++|.||+|++
T Consensus 652 avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 652 AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRL 731 (733)
T ss_pred hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEe
Confidence 999999995 68999999999999853 1 1 356778888652 4888889999999999999999999
Q ss_pred E
Q 000654 375 H 375 (1371)
Q Consensus 375 w 375 (1371)
|
T Consensus 732 f 732 (733)
T KOG0650|consen 732 F 732 (733)
T ss_pred e
Confidence 8
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=4.4e-15 Score=170.98 Aligned_cols=453 Identities=13% Similarity=0.183 Sum_probs=278.7
Q ss_pred cEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCC
Q 000654 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1371)
Q Consensus 67 ~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~d 146 (1371)
.|+.++|- ||| ..++.+.+..+.+||.+. +..++++++|.+.|.+++|+. +
T Consensus 14 ci~d~afk-------PDG----sqL~lAAg~rlliyD~nd---------------G~llqtLKgHKDtVycVAys~---d 64 (1081)
T KOG1538|consen 14 CINDIAFK-------PDG----TQLILAAGSRLLVYDTSD---------------GTLLQPLKGHKDTVYCVAYAK---D 64 (1081)
T ss_pred chheeEEC-------CCC----ceEEEecCCEEEEEeCCC---------------cccccccccccceEEEEEEcc---C
Confidence 58999999 999 567777778899999986 567889999999999999999 9
Q ss_pred CcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCC
Q 000654 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1371)
Q Consensus 147 g~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s 226 (1371)
|+.+|+|++|+.|.+|...- -..++..+...+.++.| +|-...|++++ -+..-+|....
T Consensus 65 GkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsF---NP~~h~LasCs-LsdFglWS~~q-------------- 123 (1081)
T KOG1538|consen 65 GKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSF---NPITHQLASCS-LSDFGLWSPEQ-------------- 123 (1081)
T ss_pred CceeccCCCceeEEEecccc---cceeeeccCCeeeEeec---CchHHHhhhcc-hhhccccChhh--------------
Confidence 99999999999999997642 22334445556667766 67777888876 34556777651
Q ss_pred CCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeec
Q 000654 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1371)
Q Consensus 227 ~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~g 306 (1371)
. .+... .-...|.+.+|..||++|+-|-.||+|.|-+-..... .. +. .--|
T Consensus 124 -------------------K-~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek-----~~-I~--Rpgg 174 (1081)
T KOG1538|consen 124 -------------------K-SVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK-----VK-IE--RPGG 174 (1081)
T ss_pred -------------------h-hHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc-----eE-Ee--CCCC
Confidence 1 11110 1235678899999999999999999999886443322 11 11 2345
Q ss_pred CCccEEEEEEcC-------CEEEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 307 HNARVWDCCLTD-------SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 307 h~~~I~~l~~s~-------~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
...+||+++|++ ..++......++..+.++|+.+..-+.-.-+ -.|+.+.++|.+++.||.|+.+++|.-+|
T Consensus 175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~Fd-P~CisYf~NGEy~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFD-PCCISYFTNGEYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCC-chhheeccCCcEEEEccCCCceEEEeecC
Confidence 778999999973 5889999999999999999888754443332 45889999999999999999999998766
Q ss_pred CCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEE-EEcCCcEEEEEeecCCCc-----
Q 000654 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSV----- 453 (1371)
Q Consensus 380 ~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv-~t~~G~i~~~~l~~~~~~----- 453 (1371)
-.+.+. .....+|..++..|+++.++ +..+|.+-.+++-.....
T Consensus 254 vrLGTv------------------------------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~ 303 (1081)
T KOG1538|consen 254 VRLGTV------------------------------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKD 303 (1081)
T ss_pred eEEeec------------------------------cccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHH
Confidence 433222 12335688888889887554 557787765543211000
Q ss_pred e--e---------EEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccce-eeeeeeccCcc
Q 000654 454 N--W---------NKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQL-SFTFTWSAGIE 521 (1371)
Q Consensus 454 ~--w---------~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~-~~~~~~~~~~~ 521 (1371)
+ . ..+.. .....|.|-|+...- .--.+.+++--.+ .|.+|.+.++...+-. ....+....-+
T Consensus 304 RYA~R~sMtDVivQhLi~-~qkvrIkC~DLVkKi----aiYrnrLAVQLpe-ki~iYel~se~~~~mhY~v~ekI~kkf~ 377 (1081)
T KOG1538|consen 304 RYAYRDSMTDVIVQHLIT-EQKVRIKCKDLVKKI----AIYRNRLAVQLPE-KILIYELYSEDLSDMHYRVKEKIIKKFE 377 (1081)
T ss_pred hhhhhhhhHHHHHHHHhh-cceeeeeHHHHHHHH----Hhhhhhheecccc-eEEEEeccccccccchhHHHHHHHhhcc
Confidence 0 0 00000 112234443332110 0012345554444 6888888765433210 00000000000
Q ss_pred cceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCC
Q 000654 522 RQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLR 601 (1371)
Q Consensus 522 ~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~d 601 (1371)
-+++ ++| +++++.+ .+.++..+|+..... +.+.+...-.|..--+++ +...-|++|.++
T Consensus 378 cSLl--VVc----~~HiVlC-qekrLqClDF~Gvk~-------ReW~M~S~iRYikV~GGP-------~gREgL~vGlkn 436 (1081)
T KOG1538|consen 378 CSLL--VVC----ANHIVLC-QEKRLQCLDFSGVKE-------REWQMESLIRYIKVIGGP-------PGREGLLVGLKN 436 (1081)
T ss_pred ceEE--EEE----cCeEEEE-cccceeeecccchhh-------hhhhHHHHHHhhhhhcCC-------CCcceeEEEecC
Confidence 1111 111 2344444 567788888775432 222222111111101111 234578899999
Q ss_pred CeEEEEEcCcccccccccccccccccccccccccCCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEecCCcc
Q 000654 602 GNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRES 675 (1371)
Q Consensus 602 GtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~~~~~ 675 (1371)
|.|+=.=+++. + |+-.. ..+|.|.+..-..+...|++....++..++|+..++..
T Consensus 437 GqV~kiF~dN~------------~-PiLl~------~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL 491 (1081)
T KOG1538|consen 437 GQVLKIFVDNL------------F-PILLL------KQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELL 491 (1081)
T ss_pred CcEEEEEecCC------------c-hhhee------cccceeEEeeccCCcceEEEEccCCeEEEEEccCCceE
Confidence 98763323321 1 22111 23444444433355678999999999999999987643
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=9.3e-15 Score=168.35 Aligned_cols=272 Identities=18% Similarity=0.235 Sum_probs=207.0
Q ss_pred cEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-CC
Q 000654 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EK 97 (1371)
Q Consensus 19 ~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~ 97 (1371)
.|..++|- || |.-|+.+.+..+.+||...|.++.++++|++ .|.+++++ .|| ..+|+++ |+
T Consensus 14 ci~d~afk--PD----GsqL~lAAg~rlliyD~ndG~llqtLKgHKD-tVycVAys-------~dG----krFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFK--PD----GTQLILAAGSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYA-------KDG----KRFASGSADK 75 (1081)
T ss_pred chheeEEC--CC----CceEEEecCCEEEEEeCCCcccccccccccc-eEEEEEEc-------cCC----ceeccCCCce
Confidence 68999999 99 6677777778999999999999999999988 89999999 888 6777776 99
Q ss_pred eEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCC
Q 000654 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1371)
Q Consensus 98 sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~ 177 (1371)
.|.+|+-..+. .+ . -.|.+.|.|+.|+| -.+.|++++-. ..-+|....... .+.+...
T Consensus 76 ~VI~W~~klEG--------------~L--k-YSH~D~IQCMsFNP---~~h~LasCsLs-dFglWS~~qK~V-~K~kss~ 133 (1081)
T KOG1538|consen 76 SVIIWTSKLEG--------------IL--K-YSHNDAIQCMSFNP---ITHQLASCSLS-DFGLWSPEQKSV-SKHKSSS 133 (1081)
T ss_pred eEEEecccccc--------------ee--e-eccCCeeeEeecCc---hHHHhhhcchh-hccccChhhhhH-Hhhhhhe
Confidence 99999876432 11 1 15999999999999 77888888743 467888754432 2222222
Q ss_pred cceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccC
Q 000654 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1371)
Q Consensus 178 ~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~ 257 (1371)
+ +.+..+ ..||.+++-|-.+|+|.+-+-..+ ....+.+-.|...
T Consensus 134 R--~~~CsW---tnDGqylalG~~nGTIsiRNk~gE-------------------------------ek~~I~Rpgg~Ns 177 (1081)
T KOG1538|consen 134 R--IICCSW---TNDGQYLALGMFNGTISIRNKNGE-------------------------------EKVKIERPGGSNS 177 (1081)
T ss_pred e--EEEeee---cCCCcEEEEeccCceEEeecCCCC-------------------------------cceEEeCCCCCCC
Confidence 2 222223 678999999999999998865410 1223334446788
Q ss_pred CEEEEEEcCCC-----CEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeE
Q 000654 258 SIFRIEWSSCG-----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1371)
Q Consensus 258 ~I~~v~~spdg-----~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I 330 (1371)
+|++|+|+|.. ..++......++.++.+...... .-..-.....|+.+. +.+++.|+.|+.+
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig-----------k~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG-----------KDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEecceeec-----------ccccCCCCchhheeccCCcEEEEccCCCce
Confidence 99999999954 46788888888888887764321 111122334566664 7899999999999
Q ss_pred EEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 331 RVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 331 ~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.+|-.+|-.+.++..... .||+++..|++++++.|+.||+|..|++-
T Consensus 247 ~~fTR~GvrLGTvg~~D~-WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 247 SLFTRDGVRLGTVGEQDS-WIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEeecCeEEeeccccce-eEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 999999988888877655 79999999999999999999999999983
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.70 E-value=8.3e-16 Score=167.99 Aligned_cols=252 Identities=17% Similarity=0.227 Sum_probs=175.8
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC----------------CeEEEEEEeecCccEEEEEeecccc
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----------------GTLIRPFQVFHGIRLHGISCNFINC 78 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~s----------------g~~l~~~~~~~~~~I~~i~~s~~~~ 78 (1371)
|.+.+.-+... +- +...+.++=+ .|.|.|||+.. .+.+.++.+|.+ .=++|+||+.
T Consensus 150 h~g~~NRvr~~--~~--~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-EGy~LdWSp~-- 222 (440)
T KOG0302|consen 150 HYGGINRVRVS--RL--GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-EGYGLDWSPI-- 222 (440)
T ss_pred cccccceeeec--cc--CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-cceeeecccc--
Confidence 55666666666 32 2234444444 49999999742 345677777775 5689999932
Q ss_pred ccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeee-eeeeccCCCCcEEEEEEEeecCCCcEEEEEECC
Q 000654 79 TEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLS-LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (1371)
Q Consensus 79 ~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~-~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~D 156 (1371)
..| .++++. -+.|++|...++. ++ -...+.+|+..|-+++|+| .....|++|+.|
T Consensus 223 ---~~g-----~LlsGDc~~~I~lw~~~~g~-------------W~vd~~Pf~gH~~SVEDLqWSp--tE~~vfaScS~D 279 (440)
T KOG0302|consen 223 ---KTG-----RLLSGDCVKGIHLWEPSTGS-------------WKVDQRPFTGHTKSVEDLQWSP--TEDGVFASCSCD 279 (440)
T ss_pred ---ccc-----ccccCccccceEeeeeccCc-------------eeecCccccccccchhhhccCC--ccCceEEeeecC
Confidence 233 233322 4789999998743 21 2345668999999999999 355789999999
Q ss_pred CcEEEEECCCCeEEEE-EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcc
Q 000654 157 NSIRVWDISNSSIILE-VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1371)
Q Consensus 157 g~I~vWd~~~~~~~~~-l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1371)
++|+|||++.+..... +...+..-+..+.| +.+..+||+|+.||+++|||++..
T Consensus 280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISW---nr~~~lLasG~DdGt~~iwDLR~~---------------------- 334 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISW---NRREPLLASGGDDGTLSIWDLRQF---------------------- 334 (440)
T ss_pred ceEEEEEecCCCccceeEeeccCCceeeEEc---cCCcceeeecCCCceEEEEEhhhc----------------------
Confidence 9999999998733211 11333334555554 555669999999999999999821
Q ss_pred eeeecccccceeeEEEEecccCCEEEEEEcCC-CCEEEEEeCCCcEEEEEccCCccc------CCCCceeeeceEeecCC
Q 000654 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWK------DSDSIEEVGSSVLYGHN 308 (1371)
Q Consensus 236 ~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spd-g~~LaS~s~Dg~VriWdl~~~~~~------~~~~~~~~~~~~~~gh~ 308 (1371)
..++++..++-|..+|++|.|+|. ...|++++.|..|.|||+.-..-. ...-++.+.|..++-|.
T Consensus 335 --------~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq 406 (440)
T KOG0302|consen 335 --------KSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ 406 (440)
T ss_pred --------cCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec
Confidence 145788999999999999999994 467888889999999999754321 00112333444666664
Q ss_pred --ccEEEEEEc---CCEEEEEeCCCeE
Q 000654 309 --ARVWDCCLT---DSFIITAGEDCTC 330 (1371)
Q Consensus 309 --~~I~~l~~s---~~~L~Sgs~Dg~I 330 (1371)
..+..+.|+ |.+|++.+.||..
T Consensus 407 GQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 407 GQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred chhHhhhheeccCCCCeEEEeccccee
Confidence 468889998 6899999999853
No 152
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.4e-17 Score=192.54 Aligned_cols=232 Identities=23% Similarity=0.372 Sum_probs=193.3
Q ss_pred CCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEE
Q 000654 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (1371)
Q Consensus 130 gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd 209 (1371)
.|...+.++..-. .++.+++|+.|-.+-+|.+.....+..+.+++. .+-++.| +.+..+|++|+.+|.|++||
T Consensus 26 ~hsaav~~lk~~~---s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes-pIeSl~f---~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 26 AHSAAVGCLKIRK---SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES-PIESLTF---DTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhceeeeec---cceeeccCCCceeeccccccCCchhheeeccCC-cceeeec---CcchhhhcccccCCceeeee
Confidence 5777777777754 778899999999999999987777777666654 4667777 67788999999999999999
Q ss_pred cccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000654 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1371)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~ 289 (1371)
+. ..+.++++.||...+.+|.|+|-+.+.++++.|+.+.+||.+...
T Consensus 99 le---------------------------------eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 99 LE---------------------------------EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred hh---------------------------------hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence 99 667788999999999999999999999999999999999999665
Q ss_pred ccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEE
Q 000654 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (1371)
Q Consensus 290 ~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tg 366 (1371)
+ . ..+.+|...+..+.|+ +.+++++++|.+++|||+ .|+.+..|+.|.+ .|.++.|+|..-++++|
T Consensus 146 c-----~-----~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 146 C-----S-----HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPG 214 (825)
T ss_pred c-----e-----eeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhccC
Confidence 5 2 3777899999999998 579999999999999999 8999999999999 59999999999999999
Q ss_pred ECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCc
Q 000654 367 GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (1371)
Q Consensus 367 g~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~ 441 (1371)
|.|+++++||++.- ++.+. .+.....|++.+|.|++..+.++..-.
T Consensus 215 s~d~tv~f~dletf------------------e~I~s-----------~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 215 SSDRTVRFWDLETF------------------EVISS-----------GKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCCceeeeecccee------------------EEeec-----------cCCccCCceeeeecCCceeeecCchhh
Confidence 99999999999521 11110 111235689999999998877764443
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4.9e-15 Score=158.36 Aligned_cols=286 Identities=14% Similarity=0.171 Sum_probs=198.8
Q ss_pred EEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE-CCC
Q 000654 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEK 97 (1371)
Q Consensus 20 Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~-gd~ 97 (1371)
-.|+.|+ +. |.+||.|. +|.|.|||..|...-+.+..|-. +|.+++|| +|| ++|+++ .|.
T Consensus 26 a~~~~Fs--~~----G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-pi~sl~WS-------~dg----r~LltsS~D~ 87 (405)
T KOG1273|consen 26 AECCQFS--RW----GDYLAVGCANGRVVIYDFDTFRIARMLSAHVR-PITSLCWS-------RDG----RKLLTSSRDW 87 (405)
T ss_pred cceEEec--cC----cceeeeeccCCcEEEEEccccchhhhhhcccc-ceeEEEec-------CCC----CEeeeecCCc
Confidence 6899999 87 88999998 79999999999876666676665 89999999 999 455554 599
Q ss_pred eEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCC
Q 000654 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1371)
Q Consensus 98 sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~ 177 (1371)
++++||+..+. +++.++ ...+|+.+.|+| .+.+..+..--+..-.+-++..++...--....
T Consensus 88 si~lwDl~~gs---------------~l~rir-f~spv~~~q~hp--~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d 149 (405)
T KOG1273|consen 88 SIKLWDLLKGS---------------PLKRIR-FDSPVWGAQWHP--RKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD 149 (405)
T ss_pred eeEEEeccCCC---------------ceeEEE-ccCccceeeecc--ccCCeEEEEEecCCcEEEEecCCceeeccCCCc
Confidence 99999998633 334333 568999999999 233333333334445555665433221111222
Q ss_pred cceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEeccc-
Q 000654 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE- 256 (1371)
Q Consensus 178 ~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~- 256 (1371)
+..-.+..--.+...|.++++|+..|.+.++|.. +.+.+..++-..
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~---------------------------------t~e~vas~rits~ 196 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE---------------------------------TLECVASFRITSV 196 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecc---------------------------------hheeeeeeeechh
Confidence 2222222211126779999999999999999998 455565555444
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCC-CCceeeeceEee--cCCccEEEEEEc--CCEEEEEe-CCCeE
Q 000654 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS-DSIEEVGSSVLY--GHNARVWDCCLT--DSFIITAG-EDCTC 330 (1371)
Q Consensus 257 ~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~-~~~~~~~~~~~~--gh~~~I~~l~~s--~~~L~Sgs-~Dg~I 330 (1371)
..|..|.++..|++|+.-+.|+.||.+++..-..... ..+++.. .+. -....-.+++|+ +.+++.++ .-..+
T Consensus 197 ~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~--K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaL 274 (405)
T KOG1273|consen 197 QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH--KLQDVVNKLQWKKCCFSGDGEYVCAGSARAHAL 274 (405)
T ss_pred eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhH--HHHHHHhhhhhhheeecCCccEEEeccccceeE
Confidence 7899999999999999999999999999874211000 0011000 000 011223467777 57776665 34569
Q ss_pred EEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 331 ~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
+||.. .|.+++.+.+.++.....+.|+|-...+++- ..|.+++|..
T Consensus 275 YIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 275 YIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred EEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 99999 8999999999987678889999988888877 7889999987
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.68 E-value=2.2e-15 Score=164.71 Aligned_cols=209 Identities=20% Similarity=0.299 Sum_probs=159.8
Q ss_pred eeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC----------------eEEEEEecCCcceEEEEEeecc
Q 000654 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS----------------SIILEVHSPERCLLYSMKLWGD 189 (1371)
Q Consensus 126 ~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~----------------~~~~~l~~~~~~~v~s~~~~~~ 189 (1371)
....+|.+.|+.+...+.+ +..+.|+=+..|.|.||++... +.+.++..+. ..-|.+.|
T Consensus 145 ~~~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~LdW--- 219 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLDW--- 219 (440)
T ss_pred ccccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-ccceeeec---
Confidence 3445788888888888722 4456777788999999998531 2233444333 44566666
Q ss_pred CC-CCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCC-
Q 000654 190 NL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC- 267 (1371)
Q Consensus 190 s~-d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spd- 267 (1371)
|| ....|++|..-+.|++|...++. |. .-...+.+|+..|-.+.|||.
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~-------------------------W~-----vd~~Pf~gH~~SVEDLqWSptE 269 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGS-------------------------WK-----VDQRPFTGHTKSVEDLQWSPTE 269 (440)
T ss_pred ccccccccccCccccceEeeeeccCc-------------------------ee-----ecCccccccccchhhhccCCcc
Confidence 33 33468888888999999987221 11 112346689999999999995
Q ss_pred CCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC----CCcEEE
Q 000654 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS----DGKQLK 341 (1371)
Q Consensus 268 g~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~----~g~~l~ 341 (1371)
...|+|||-|++|+|||++.+... .. .....|.+.|.-+.|+ -.+||+|+.||+++|||+ .++++.
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~~-----~~---~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPKK-----AA---VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred CceEEeeecCceEEEEEecCCCcc-----ce---eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce
Confidence 468999999999999999987441 11 2447899999999998 358999999999999998 478999
Q ss_pred EEeeccCcCEEEEEEcCCC-CEEEEEECCCcEEEEEcC
Q 000654 342 MIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 342 ~l~~h~~~~V~sl~~spdg-~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.|+.|.. +|++|.|+|.. ..|+.+|.|..|.+||+.
T Consensus 342 ~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 342 TFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 9999999 89999999864 578889999999999993
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.68 E-value=2.7e-15 Score=168.21 Aligned_cols=280 Identities=11% Similarity=0.092 Sum_probs=203.1
Q ss_pred CCCccEEEEeCCCCc-------cc--CcEEEEEEEecCCCCCCCCEEEEEe--CCcEEEEECCCCeE--EEEEEeecCcc
Q 000654 1 MGKKDLSEWRLDVGQ-------YL--GEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTL--IRPFQVFHGIR 67 (1371)
Q Consensus 1 s~D~tV~iWdl~~~~-------h~--~~Vtavafs~~pd~~~~~~llaaG~--dg~I~Iwd~~sg~~--l~~~~~~~~~~ 67 (1371)
|...++++||+.... |. -.+..+.+. .. ..++++.. |..+++|.- .|+. +.......+..
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~--~~----n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd~ 81 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ--RR----NFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGDN 81 (673)
T ss_pred ccCCceEEeecccccCccccccCCCCCcceeeecc--cc----ceEEEeecCCceeEEEecc-cCCCCccceeeccccch
Confidence 345579999988765 22 227888887 43 22444433 477888863 3331 11122112223
Q ss_pred EEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCC
Q 000654 68 LHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1371)
Q Consensus 68 I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~d 146 (1371)
-+|++.. ... ..++++| .+.|+|||++. ..+.+.+++|++.|+++.++. .
T Consensus 82 ~~Cv~~~-------s~S----~y~~sgG~~~~Vkiwdl~~---------------kl~hr~lkdh~stvt~v~YN~---~ 132 (673)
T KOG4378|consen 82 AFCVACA-------SQS----LYEISGGQSGCVKIWDLRA---------------KLIHRFLKDHQSTVTYVDYNN---T 132 (673)
T ss_pred HHHHhhh-------hcc----eeeeccCcCceeeehhhHH---------------HHHhhhccCCcceeEEEEecC---C
Confidence 3333322 222 5666666 79999999984 234567889999999999998 8
Q ss_pred CcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCC-CcEEEEEeCCCeEEEEEcccCCccccCCCCCCC
Q 000654 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1371)
Q Consensus 147 g~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d-~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~ 225 (1371)
..+||+++..|.|.|..+.++.....+..+.+..+.-+.| ++. ..+|.+++.+|.|.+||+.
T Consensus 133 DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~y---s~skr~lL~~asd~G~VtlwDv~-------------- 195 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRY---SPSKRFLLSIASDKGAVTLWDVQ-------------- 195 (673)
T ss_pred cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeec---ccccceeeEeeccCCeEEEEecc--------------
Confidence 8999999999999999999988887887776666655555 333 3467789999999999998
Q ss_pred CCCCCCCCcceeeecccccceee-EEEEecccCCEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcccCCCCceeeeceE
Q 000654 226 HAHGSSSDFKCFKLQDQQHTAVN-LFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1371)
Q Consensus 226 s~~~~~~~~~~i~i~~~~~~~~~-~~~l~gH~~~I~~v~~spdg-~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~ 303 (1371)
...+ .+-...|..+...|+|+|.. .+|++.+.|..|.+||....+. . .
T Consensus 196 -------------------g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-----~------~ 245 (673)
T KOG4378|consen 196 -------------------GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-----T------D 245 (673)
T ss_pred -------------------CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-----c------c
Confidence 2223 33456799999999999955 5789999999999999997655 1 2
Q ss_pred eecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC--CCcEEEEEeeccCcCEEEEEEcCCCCEEEE
Q 000654 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1371)
Q Consensus 304 ~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~--~g~~l~~l~~h~~~~V~sl~~spdg~~L~T 365 (1371)
......+...++|. +.+|+.|...|.|..||+ ...++..+..|.. .|++++|-|.- .+++
T Consensus 246 ~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 246 RLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-SVTRVAFQPSP-TVLT 309 (673)
T ss_pred eeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-ceeEEEeeecc-eeee
Confidence 22334567889998 689999999999999999 5678999999999 69999998754 4444
No 156
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.2e-14 Score=172.71 Aligned_cols=240 Identities=13% Similarity=0.178 Sum_probs=182.0
Q ss_pred cEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecC
Q 000654 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1371)
Q Consensus 67 ~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~ 145 (1371)
.-+.|+|. |+| .+|+++| |+.|++|+..... +.-..+..+...|.+++..
T Consensus 15 G~t~i~~d-------~~g----efi~tcgsdg~ir~~~~~sd~--------------e~P~ti~~~g~~v~~ia~~---- 65 (933)
T KOG1274|consen 15 GLTLICYD-------PDG----EFICTCGSDGDIRKWKTNSDE--------------EEPETIDISGELVSSIACY---- 65 (933)
T ss_pred ceEEEEEc-------CCC----CEEEEecCCCceEEeecCCcc--------------cCCchhhccCceeEEEeec----
Confidence 57889998 999 4555555 9999999976532 0111222277788888874
Q ss_pred CCcEEEEEECCCcEEEEECCCCe---EEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCC
Q 000654 146 GNRSLAIGCSDNSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (1371)
Q Consensus 146 dg~~Latgs~Dg~I~vWd~~~~~---~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~ 222 (1371)
+.+|++|+.+++|.+|.+.++. .+..+.-+.++..+ +.+|.++|+|+.|-.|++-+..
T Consensus 66 -s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v-------~g~g~~iaagsdD~~vK~~~~~----------- 126 (933)
T KOG1274|consen 66 -SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAV-------SGSGKMIAAGSDDTAVKLLNLD----------- 126 (933)
T ss_pred -ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEE-------ecCCcEEEeecCceeEEEEecc-----------
Confidence 4689999999999999998765 45666666554433 5679999999999999999988
Q ss_pred CCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeece
Q 000654 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1371)
Q Consensus 223 ~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~ 302 (1371)
.......+.+|.++|.+|.|+|++.+||+.+-||.|++||+.++..... +..+.+.
T Consensus 127 ----------------------D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t--l~~v~k~ 182 (933)
T KOG1274|consen 127 ----------------------DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT--LTGVDKD 182 (933)
T ss_pred ----------------------ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh--cccCCcc
Confidence 4556778899999999999999999999999999999999998765210 0000000
Q ss_pred EeecCCccEEEEEEcC--CEEEEEeCCCeEEEEeC-CCcEEEEEee--ccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 303 VLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 303 ~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~--h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
.-.-....+..++|+| ..++..+.|+.|++|+. .......+.. +.. .+..+.|+|+|.|||+++.||.|.|||.
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss-~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS-KFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc-ceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 0011134467789984 68889999999999999 5666666553 333 3899999999999999999999999999
Q ss_pred CC
Q 000654 378 QA 379 (1371)
Q Consensus 378 ~~ 379 (1371)
+.
T Consensus 262 ~t 263 (933)
T KOG1274|consen 262 DT 263 (933)
T ss_pred cc
Confidence 64
No 157
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=7e-15 Score=177.74 Aligned_cols=312 Identities=16% Similarity=0.223 Sum_probs=214.0
Q ss_pred cEEEEeCCCCc-ccCcEEEEEEEecCCCCCCCCEEEEEeC-CcEEEEECCCCeEEEEEEe--ecCccEEEEEeecccccc
Q 000654 5 DLSEWRLDVGQ-YLGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQV--FHGIRLHGISCNFINCTE 80 (1371)
Q Consensus 5 tV~iWdl~~~~-h~~~Vtavafs~~pd~~~~~~llaaG~d-g~I~Iwd~~sg~~l~~~~~--~~~~~I~~i~~s~~~~~~ 80 (1371)
.|-.||..... -.++-..+.|+ |= .+.++++.+ ..|+|||.+.++.+..|.. +...+|..+.+-.+
T Consensus 1051 ~i~~W~~~~~~~n~~~pk~~~~h--pf----~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe---- 1120 (1387)
T KOG1517|consen 1051 PIGNWDQKFMTGNNQPPKTLKFH--PF----EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE---- 1120 (1387)
T ss_pred cccchHHHHHhcCCCCCceeeec--CC----CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc----
Confidence 34566643322 12345667888 64 467777774 8999999999998777653 23457888887632
Q ss_pred CCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeee-eeccCCCCcEEEEEEEeecCCCcEEEEEECCCcE
Q 000654 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV-QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1371)
Q Consensus 81 ~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~-~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I 159 (1371)
.|. ..++++..||.||||+-..... .. +....-+..+ ..+.+-.+.=.-++|.. ...+|+++|.-..|
T Consensus 1121 -~D~---aLlLtas~dGvIRIwk~y~~~~--~~--~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ---~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1121 -QDD---ALLLTASSDGVIRIWKDYADKW--KK--PELVTAWSSLSDQLPGARGTGLVVDWQQ---QSGHLLVTGDVRSI 1189 (1387)
T ss_pred -cch---hheeeeccCceEEEeccccccc--CC--ceeEEeeccccccCccCCCCCeeeehhh---hCCeEEecCCeeEE
Confidence 332 1555666699999998653210 00 0000001111 11122222224456665 55566666668899
Q ss_pred EEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee
Q 000654 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1371)
Q Consensus 160 ~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1371)
+|||+........+.....+.+.++.. +...++.+++|..||.|++||.+.
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~--~~~~gn~i~AGfaDGsvRvyD~R~--------------------------- 1240 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSA--DLVHGNIIAAGFADGSVRVYDRRM--------------------------- 1240 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecc--cccCCceEEEeecCCceEEeeccc---------------------------
Confidence 999999998888887777766666543 345689999999999999999981
Q ss_pred cccccceeeEEEEecccCC--EEEEEEcCCCC-EEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecC---CccEEE
Q 000654 240 QDQQHTAVNLFRLVGHEGS--IFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH---NARVWD 313 (1371)
Q Consensus 240 ~~~~~~~~~~~~l~gH~~~--I~~v~~spdg~-~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh---~~~I~~ 313 (1371)
......+.....|... |..+.+.+.|- .|++|+.||.|++||++.... ...+ ....| .+..++
T Consensus 1241 ---a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-----e~~~---~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1241 ---APPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-----ETFL---TIVAHWEYGSALTA 1309 (1387)
T ss_pred ---CCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-----cccc---eeeeccccCcccee
Confidence 1133456677788887 99999998775 499999999999999998522 1111 22222 235788
Q ss_pred EEEc--CCEEEEEeCCCeEEEEeCCCcEEEEEeecc------CcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 314 CCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHI------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 314 l~~s--~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~------~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
+..+ ...+|+|+. +.|+||++.|+.+..++.+. ...+.|++|+|..-+||.|..|.+|.||..+
T Consensus 1310 l~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred eeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 8887 578999988 99999999888777665432 1258999999998899999999999999874
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.66 E-value=6.7e-15 Score=165.15 Aligned_cols=293 Identities=13% Similarity=0.145 Sum_probs=204.9
Q ss_pred CEEEEEeCCcEEEEECCCCeEEEEEEeec-CccEEEEEeeccccccCCCCcceeeEEEE--ECCCeEEEEEeccCCCCCC
Q 000654 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVAL--FGEKRVKLFELNFELSPNS 112 (1371)
Q Consensus 36 ~llaaG~dg~I~Iwd~~sg~~l~~~~~~~-~~~I~~i~~s~~~~~~~pdg~~~~~~la~--~gd~sV~vwdl~~~~~~~~ 112 (1371)
.+.++.++..+++||..+-+....+..+. ...+..+.|. ... .++++ +||+.+++|.-..+.
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~-------~~n----~lvvas~~gdk~~~~~~K~g~~---- 68 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ-------RRN----FLVVASMAGDKVMRIKEKDGKT---- 68 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeecc-------ccc----eEEEeecCCceeEEEecccCCC----
Confidence 46777778899999987655443333221 1248888887 432 33332 248899999754321
Q ss_pred CCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCC
Q 000654 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1371)
Q Consensus 113 ~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d 192 (1371)
| ....+..+.+. .-.|++... ...++++|+..++|+|||+....+.+.++.|. ..+..+.+ +..
T Consensus 69 ---~----~Vp~~~k~~gd--~~~Cv~~~s---~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~-stvt~v~Y---N~~ 132 (673)
T KOG4378|consen 69 ---P----EVPRVRKLTGD--NAFCVACAS---QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ-STVTYVDY---NNT 132 (673)
T ss_pred ---C----ccceeeccccc--hHHHHhhhh---cceeeeccCcCceeeehhhHHHHHhhhccCCc-ceeEEEEe---cCC
Confidence 0 02233333333 334555444 45789999999999999999766666777666 45666666 667
Q ss_pred CcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecc-cCCEEEEEEcCCCCE-
Q 000654 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSK- 270 (1371)
Q Consensus 193 ~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH-~~~I~~v~~spdg~~- 270 (1371)
..+||+++..|.|.|..+.+ +.....|... ...|.-+.|+|..++
T Consensus 133 DeyiAsvs~gGdiiih~~~t---------------------------------~~~tt~f~~~sgqsvRll~ys~skr~l 179 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTKT---------------------------------KQKTTTFTIDSGQSVRLLRYSPSKRFL 179 (673)
T ss_pred cceeEEeccCCcEEEEeccc---------------------------------CccccceecCCCCeEEEeeccccccee
Confidence 88999999999999999882 2223333322 345668999997765
Q ss_pred EEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeC-CCcEEEEEeec
Q 000654 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1371)
Q Consensus 271 LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h 346 (1371)
|.+++++|.|.+||+...... . .....|.++...++|+ +.+|++.+.|+.|.+||. ..+....+...
T Consensus 180 L~~asd~G~VtlwDv~g~sp~-----~----~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~ 250 (673)
T KOG4378|consen 180 LSIASDKGAVTLWDVQGMSPI-----F----HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS 250 (673)
T ss_pred eEeeccCCeEEEEeccCCCcc-----c----chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec
Confidence 677999999999999876541 1 2456799999999998 478999999999999999 44444444433
Q ss_pred cCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEE
Q 000654 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1371)
Q Consensus 347 ~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~la 426 (1371)
. +..+++|.++|.+|+.|...|.|..||+++.. .++.....|...|++++
T Consensus 251 ~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k----------------------------~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 251 H--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTK----------------------------APVAVRSAHDASVTRVA 300 (673)
T ss_pred C--CcceeeecCCceEEEeecCCceEEEEecccCC----------------------------CCceEeeecccceeEEE
Confidence 2 68999999999999999999999999996421 11222334666799999
Q ss_pred EecCC
Q 000654 427 LTSED 431 (1371)
Q Consensus 427 fs~d~ 431 (1371)
|-+..
T Consensus 301 fq~s~ 305 (673)
T KOG4378|consen 301 FQPSP 305 (673)
T ss_pred eeecc
Confidence 98764
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.65 E-value=1.2e-14 Score=162.86 Aligned_cols=294 Identities=16% Similarity=0.216 Sum_probs=203.1
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC----eEEEEEEeecCccEEEEEeeccccccCCCCcceeeE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg----~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~ 90 (1371)
+.++|++++|+ |. -..+++|+|. .|.|-+||+.+. .-+..+..|.+ +|.+|.|+ |... ...
T Consensus 185 ~~~Rit~l~fH--Pt--~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-~Vs~l~F~-------P~n~--s~i 250 (498)
T KOG4328|consen 185 TDRRITSLAFH--PT--ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-PVSGLKFS-------PANT--SQI 250 (498)
T ss_pred cccceEEEEec--cc--CcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCc-cccceEec-------CCCh--hhe
Confidence 67889999999 97 3457888888 699999999421 22344454444 89999999 4431 256
Q ss_pred EEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE-
Q 000654 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI- 169 (1371)
Q Consensus 91 la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~- 169 (1371)
++++-||+|++-|++... ++.+..+..-..++.++.|+. +...++.+..=|...+||...+..
T Consensus 251 ~ssSyDGtiR~~D~~~~i-------------~e~v~s~~~d~~~fs~~d~~~---e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNI-------------SEEVLSLDTDNIWFSSLDFSA---ESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred eeeccCceeeeeeecchh-------------hHHHhhcCccceeeeeccccC---CCccEEEeecccceEEEEeecCCcc
Confidence 666779999999998533 444445544456788888887 666677777777899999987654
Q ss_pred EEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeE
Q 000654 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1371)
Q Consensus 170 ~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~ 249 (1371)
...+..+.. -+.++++.+ ....++++++.|++.+|||++. ...+..++
T Consensus 315 ~~~~~lh~k-KI~sv~~NP--~~p~~laT~s~D~T~kIWD~R~-----------------------------l~~K~sp~ 362 (498)
T KOG4328|consen 315 YENLRLHKK-KITSVALNP--VCPWFLATASLDQTAKIWDLRQ-----------------------------LRGKASPF 362 (498)
T ss_pred chhhhhhhc-ccceeecCC--CCchheeecccCcceeeeehhh-----------------------------hcCCCCcc
Confidence 444444444 466777633 2456899999999999999981 11122234
Q ss_pred EEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCC----cc--EEEEEEc--CCEE
Q 000654 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN----AR--VWDCCLT--DSFI 321 (1371)
Q Consensus 250 ~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~----~~--I~~l~~s--~~~L 321 (1371)
.....|...|.+..|||.+..|+|.+.|..|||||..--... ..+. ....|. .+ ..-..|. .+++
T Consensus 363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~----~~p~---~~I~Hn~~t~RwlT~fKA~W~P~~~li 435 (498)
T KOG4328|consen 363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK----DEPL---GTIPHNNRTGRWLTPFKAAWDPDYNLI 435 (498)
T ss_pred eecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc----CCcc---ceeeccCcccccccchhheeCCCccEE
Confidence 455679999999999999888999999999999998511100 1111 222222 12 2335566 3788
Q ss_pred EEEeCCCeEEEEeCC-CcEEEEEeeccCcCEEEE-EEcCCCC-EEEEEECCCcEEEEEcC
Q 000654 322 ITAGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRC-LYDSLSS-LLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 322 ~Sgs~Dg~I~VWd~~-g~~l~~l~~h~~~~V~sl-~~spdg~-~L~Tgg~Dg~I~lwdl~ 378 (1371)
+.|-.-..|-|+|-+ ++.+..+.......|.++ .|+|-+. +++.++..|.|.||.-+
T Consensus 436 ~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 436 VVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 899888889999995 454666655554457665 6899888 44445567888888654
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.65 E-value=3e-14 Score=153.53 Aligned_cols=308 Identities=17% Similarity=0.245 Sum_probs=214.5
Q ss_pred EEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeec--cCCCCcEE
Q 000654 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVF 136 (1371)
Q Consensus 59 ~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l--~gh~~~I~ 136 (1371)
.++..+..+|.+++|....-. . ....+++.|.+.+.+|+...+. -...++.. ..|...-.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~--~----e~~vfatvG~~rvtiy~c~~d~------------~ir~lq~y~D~d~~Esfy 93 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGC--D----EPQVFATVGGNRVTIYECPGDG------------GIRLLQSYADEDHDESFY 93 (385)
T ss_pred ehhccCCCccceeeeehhcCC--C----CCceEEEeCCcEEEEEEECCcc------------ceeeeeeccCCCCCcceE
Confidence 333334458999999833111 1 1258899999999999987432 01233322 23667788
Q ss_pred EEEEEeecCC-CcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCc
Q 000654 137 DVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (1371)
Q Consensus 137 ~v~fsp~~~d-g~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~ 215 (1371)
.++|.-...+ ..+||.|+.-|.|+|.|+.+++....+.++.. .+..+.+++. +.++|++++.|..|++|+++
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~-sINeik~~p~--~~qlvls~SkD~svRlwnI~---- 166 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG-SINEIKFHPD--RPQLVLSASKDHSVRLWNIQ---- 166 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCc-cchhhhcCCC--CCcEEEEecCCceEEEEecc----
Confidence 8888763222 46889999999999999999998888877654 3556666543 35799999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCcceeeecccccceeeEEEE---ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCccc-
Q 000654 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK- 291 (1371)
Q Consensus 216 ~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l---~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~- 291 (1371)
+...+..+ .||.+.|.++.|++++.+++|++.|.++++|++...+..
T Consensus 167 -----------------------------~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~ 217 (385)
T KOG1034|consen 167 -----------------------------TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN 217 (385)
T ss_pred -----------------------------CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence 55555554 579999999999999999999999999999999854321
Q ss_pred ---------CCCCc-------eeeec-eEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC-C-C-------------cE
Q 000654 292 ---------DSDSI-------EEVGS-SVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-D-G-------------KQ 339 (1371)
Q Consensus 292 ---------~~~~~-------~~~~~-~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~-g-------------~~ 339 (1371)
..... ..+.. .+..-|...|-|+.|-++++++-+-++.|..|.. . + ..
T Consensus 218 ~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti 297 (385)
T KOG1034|consen 218 KLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI 297 (385)
T ss_pred hhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceee
Confidence 00000 00000 1334588888899999999999999999999987 1 1 12
Q ss_pred EEEEeeccCcCEEEEEE--cCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccC
Q 000654 340 LKMIKEHIGRGIWRCLY--DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417 (1371)
Q Consensus 340 l~~l~~h~~~~V~sl~~--spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~ 417 (1371)
+..+..... .||-+.| +|-+++||.|...|.|.+||++......... + .-..
T Consensus 298 ~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt------------l-------------~~s~ 351 (385)
T KOG1034|consen 298 LGEFDYPMC-DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT------------L-------------THSK 351 (385)
T ss_pred eeEeccCcc-ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce------------E-------------Eecc
Confidence 334445555 3787765 5668899999999999999996432110000 0 0011
Q ss_pred CCccEEEEEEecCCcEEE-EEcCCcEEEEE
Q 000654 418 KSEYVRCLHLTSEDTLYI-ATNHGYLYHTK 446 (1371)
Q Consensus 418 ~~~~V~~lafs~d~~llv-~t~~G~i~~~~ 446 (1371)
....|+..+|+.|+.+++ .++++.+.+|+
T Consensus 352 ~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 352 SGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 235699999999997655 45677776554
No 161
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4.6e-14 Score=170.03 Aligned_cols=282 Identities=13% Similarity=0.098 Sum_probs=202.9
Q ss_pred ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCC-cccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEE
Q 000654 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCR 331 (1371)
Q Consensus 253 ~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~-~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~ 331 (1371)
.+|...-+.|.|.|+|.+|++++.||.|++|+.... .. .+ .+.-+...|.+++....+|++++++++|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----P~-----ti~~~g~~v~~ia~~s~~f~~~s~~~tv~ 79 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----PE-----TIDISGELVSSIACYSNHFLTGSEQNTVL 79 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----Cc-----hhhccCceeEEEeecccceEEeeccceEE
Confidence 368888999999999999999999999999998775 22 11 33338888999998888999999999999
Q ss_pred EEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCcc
Q 000654 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE 410 (1371)
Q Consensus 332 VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~ 410 (1371)
+|.+ ++..-..+....- +++.++|+.+|.++|.||.|-.|++-++.. .+.
T Consensus 80 ~y~fps~~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~~vK~~~~~D-----------------~s~----------- 130 (933)
T KOG1274|consen 80 RYKFPSGEEDTILARFTL-PIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-----------------SSQ----------- 130 (933)
T ss_pred EeeCCCCCccceeeeeec-cceEEEEecCCcEEEeecCceeEEEEeccc-----------------cch-----------
Confidence 9999 5544333443444 699999999999999999999999998842 111
Q ss_pred ceeeccCCCccEEEEEEecCCcEEEE-EcCCcEEEEEeecCCCce-eEEeEeecCC--ccEEEEeecCCCCCCCCCCCCE
Q 000654 411 QIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVN-WNKILQVSEG--MPIICMDLLSNEPKYPCGIDDW 486 (1371)
Q Consensus 411 ~~~~~~~~~~~V~~lafs~d~~llv~-t~~G~i~~~~l~~~~~~~-w~~i~~~~~~--~~I~~ld~~~~~~~~s~~~~~l 486 (1371)
...+.+|.++|.++.|.|++.+|+. +.+|.++.|.+.+..... |..+...... ..+++ ...+ .|++..
T Consensus 131 -~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~-~~aW------~Pk~g~ 202 (933)
T KOG1274|consen 131 -EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICT-RLAW------HPKGGT 202 (933)
T ss_pred -heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceee-eeee------cCCCCe
Confidence 1233477889999999999988775 569999988776543222 3333222111 11211 1222 256666
Q ss_pred EEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCcc
Q 000654 487 VALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKT 566 (1371)
Q Consensus 487 la~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~ 566 (1371)
+++...|+.|++|+..+.....+ .........+. .+.|+|.|+||++++.+|.|.|||++....
T Consensus 203 la~~~~d~~Vkvy~r~~we~~f~------Lr~~~~ss~~~-~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--------- 266 (933)
T KOG1274|consen 203 LAVPPVDNTVKVYSRKGWELQFK------LRDKLSSSKFS-DLQWSPNGKYIAASTLDGQILVWNVDTHER--------- 266 (933)
T ss_pred EEeeccCCeEEEEccCCceehee------ecccccccceE-EEEEcCCCcEEeeeccCCcEEEEecccchh---------
Confidence 77777799999999887654422 22222222222 467899999999999999999999885210
Q ss_pred ceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEE
Q 000654 567 NNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLF 607 (1371)
Q Consensus 567 ~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iw 607 (1371)
++ ....|+|++|-|+.+-|-+-...|+..+|
T Consensus 267 ------~~----~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 267 ------HE----FKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ------cc----ccceeEEEecCCCCCeeEEEeeccccccC
Confidence 11 24569999999998888777777776655
No 162
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=4.1e-15 Score=170.58 Aligned_cols=262 Identities=18% Similarity=0.259 Sum_probs=188.6
Q ss_pred CCCccEEEEeCCCCc------ccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCe---------EEEE------
Q 000654 1 MGKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT---------LIRP------ 59 (1371)
Q Consensus 1 s~D~tV~iWdl~~~~------h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~---------~l~~------ 59 (1371)
|+||+||||.+.++. ..+.|.||+|+ |. +...+||++.+..+.|-|..-|. ++++
T Consensus 419 sdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~--P~--~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~ 494 (733)
T KOG0650|consen 419 SDDGTVRIWEIATGRCVRTVQFDSEIRSVAWN--PL--SDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESE 494 (733)
T ss_pred CCCCcEEEEEeecceEEEEEeecceeEEEEec--CC--CCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccC
Confidence 689999999999998 45779999999 86 55667777776666666643220 0000
Q ss_pred ---------------------EEeecCccEEEEEeeccccccCCCCcceeeEEEEEC---CCeEEEEEeccCCCCCCCCC
Q 000654 60 ---------------------FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQ 115 (1371)
Q Consensus 60 ---------------------~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g---d~sV~vwdl~~~~~~~~~~~ 115 (1371)
+...+...|..+.|+ -.|. ++..+.. .+.|.|+++....
T Consensus 495 p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH-------rkGD---YlatV~~~~~~~~VliHQLSK~~------- 557 (733)
T KOG0650|consen 495 PDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH-------RKGD---YLATVMPDSGNKSVLIHQLSKRK------- 557 (733)
T ss_pred CcccceeechhhhhhhccceEEEEecCCccceeeee-------cCCc---eEEEeccCCCcceEEEEeccccc-------
Confidence 111123367777787 6673 4444443 4789999987532
Q ss_pred CccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcE
Q 000654 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALR 195 (1371)
Q Consensus 116 ~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~ 195 (1371)
....++.-.+.|.++.|+| ...+|++++ .+.|+|||+..+..++++.... .++.++++ ++.|.-
T Consensus 558 --------sQ~PF~kskG~vq~v~FHP---s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~-kwiS~msi---hp~GDn 621 (733)
T KOG0650|consen 558 --------SQSPFRKSKGLVQRVKFHP---SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGS-KWISSMSI---HPNGDN 621 (733)
T ss_pred --------ccCchhhcCCceeEEEecC---CCceEEEEe-ccceEEEehhHHHHHHHHhcCC-eeeeeeee---cCCCCe
Confidence 1233444557799999999 888888776 4679999998876665554332 24556666 678899
Q ss_pred EEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEe
Q 000654 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1371)
Q Consensus 196 Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s 275 (1371)
|+.|+.|+.+..+|+. ...++.+++.-|+..+++|+|++.-.++++|+
T Consensus 622 li~gs~d~k~~WfDld--------------------------------lsskPyk~lr~H~~avr~Va~H~ryPLfas~s 669 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLD--------------------------------LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGS 669 (733)
T ss_pred EEEecCCCeeEEEEcc--------------------------------cCcchhHHhhhhhhhhhhhhhccccceeeeec
Confidence 9999999999999998 14556777888999999999999999999999
Q ss_pred CCCcEEEEEccCCccc-CCCCceeeeceEeecCCcc----EEEEEEcC--CEEEEEeCCCeEEEE
Q 000654 276 DDRSARIWEVRAEYWK-DSDSIEEVGSSVLYGHNAR----VWDCCLTD--SFIITAGEDCTCRVW 333 (1371)
Q Consensus 276 ~Dg~VriWdl~~~~~~-~~~~~~~~~~~~~~gh~~~----I~~l~~s~--~~L~Sgs~Dg~I~VW 333 (1371)
+|+++.|+--.-..-. ...-+-+++ .+.||... |.++.|+| .+|++++.||+|++|
T Consensus 670 dDgtv~Vfhg~VY~Dl~qnpliVPlK--~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 670 DDGTVIVFHGMVYNDLLQNPLIVPLK--RLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCCcEEEEeeeeehhhhcCCceEeee--eccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9999999843221110 000033343 78899876 89999995 799999999999998
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.64 E-value=1.3e-14 Score=153.45 Aligned_cols=277 Identities=21% Similarity=0.322 Sum_probs=193.7
Q ss_pred EEEEEe-----CCcEEEEECCC--CeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC----C----CeEEE
Q 000654 37 FLLAGS-----GSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----E----KRVKL 101 (1371)
Q Consensus 37 llaaG~-----dg~I~Iwd~~s--g~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g----d----~sV~v 101 (1371)
-+++|+ ++.|.+.++.. +++..+.-.|+.+.|..|+-+ |-.. ++|+++- + ..+.|
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~-------P~d~---~ilaT~yn~~s~s~vl~~aai 97 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASS-------PFDQ---RILATVYNDTSDSGVLTGAAI 97 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcC-------CCCC---ceEEEEEeccCCCcceeeEEE
Confidence 445554 36777766654 344444444555589999988 5542 5666543 2 35889
Q ss_pred EEeccCCCCCCCCCCccceeeeeeeecc-CCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE-EEEEecCC--
Q 000654 102 FELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE-- 177 (1371)
Q Consensus 102 wdl~~~~~~~~~~~~~~~v~~~~~~~l~-gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~-~~~l~~~~-- 177 (1371)
|.+..+... + ....++.+..|. .+-+.|.|+.|.| ++..|++-. |+.|.+|++.++.. ...+..+.
T Consensus 98 w~ipe~~~~-S-----~~~tlE~v~~Ldteavg~i~cvew~P---ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~ 167 (370)
T KOG1007|consen 98 WQIPEPLGQ-S-----NSSTLECVASLDTEAVGKINCVEWEP---NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA 167 (370)
T ss_pred EecccccCc-c-----ccchhhHhhcCCHHHhCceeeEEEcC---CCCeeEEec-cCceEEEEcccCcchheeecccccc
Confidence 999753311 1 111255666665 5667999999999 888887665 89999999988765 44444322
Q ss_pred --cceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEE-EEec
Q 000654 178 --RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF-RLVG 254 (1371)
Q Consensus 178 --~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~-~l~g 254 (1371)
....++-++ ...-+++.+++.+ |+++..||++ +..... .-.+
T Consensus 168 e~~~~ftsg~W-spHHdgnqv~tt~-d~tl~~~D~R---------------------------------T~~~~~sI~dA 212 (370)
T KOG1007|consen 168 EMRHSFTSGAW-SPHHDGNQVATTS-DSTLQFWDLR---------------------------------TMKKNNSIEDA 212 (370)
T ss_pred cccceeccccc-CCCCccceEEEeC-CCcEEEEEcc---------------------------------chhhhcchhhh
Confidence 222333333 1123666776654 8999999998 222222 2246
Q ss_pred ccCCEEEEEEcCCCC-EEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeE
Q 000654 255 HEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTC 330 (1371)
Q Consensus 255 H~~~I~~v~~spdg~-~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I 330 (1371)
|...|..+.|+|+.+ +|+||++||.|||||.+..+.+ ++ .+.+|.-+||++.|+ +++|+|++.|..|
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p----v~-----el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP----VQ-----ELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc----cc-----ccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 888999999999875 6899999999999999987653 33 788999999999998 5899999999999
Q ss_pred EEEeC---CC---------------------------cEEEEEeeccCcCEEEEEEcCCCC-EEEEEECCCcEEEEEcC
Q 000654 331 RVWGS---DG---------------------------KQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 331 ~VWd~---~g---------------------------~~l~~l~~h~~~~V~sl~~spdg~-~L~Tgg~Dg~I~lwdl~ 378 (1371)
.+|.. .. ..+.++..|.. .|++++|+.-.. .+|+-+.||.+.|=.+.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 99976 10 13446777887 699999987555 57889999999886663
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.63 E-value=3e-14 Score=159.68 Aligned_cols=266 Identities=18% Similarity=0.207 Sum_probs=189.2
Q ss_pred EECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC--CCeEEEEEeccCCCCCCCCCCccceeeeeee
Q 000654 49 YDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQ 126 (1371)
Q Consensus 49 wd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g--d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~ 126 (1371)
+|+.+-.....++.+.+ +|++++|+ |.- +..+++.| .|+|-+||+..+. | +..-+.
T Consensus 171 l~l~~~~~~~v~kv~~~-Rit~l~fH-------Pt~---~~~lva~GdK~G~VG~Wn~~~~~-------~----d~d~v~ 228 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDR-RITSLAFH-------PTE---NRKLVAVGDKGGQVGLWNFGTQE-------K----DKDGVY 228 (498)
T ss_pred cccccceecceeEeccc-ceEEEEec-------ccC---cceEEEEccCCCcEEEEecCCCC-------C----ccCceE
Confidence 44445555566777776 99999999 543 23555555 5999999996322 0 123455
Q ss_pred eccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEec-CCcceEEEEEeeccCCCCcEEEEEeCCCeE
Q 000654 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (1371)
Q Consensus 127 ~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~-~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I 205 (1371)
.+..|..+|.++.|+| .+-..+++.+.||+|++-|+++...-..+.. ......+++.+ +.+...++.|+.-|.+
T Consensus 229 ~f~~hs~~Vs~l~F~P--~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~---~~e~~~vl~~~~~G~f 303 (498)
T KOG4328|consen 229 LFTPHSGPVSGLKFSP--ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDF---SAESRSVLFGDNVGNF 303 (498)
T ss_pred EeccCCccccceEecC--CChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccc---cCCCccEEEeecccce
Confidence 6678999999999999 2446788999999999999987643221111 23334445554 5566677788878899
Q ss_pred EEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 000654 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWE 284 (1371)
Q Consensus 206 ~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg-~~LaS~s~Dg~VriWd 284 (1371)
.+||.+. .+.....+.-|...|.+|+++|.. .+|||+|.|++++|||
T Consensus 304 ~~iD~R~--------------------------------~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD 351 (498)
T KOG4328|consen 304 NVIDLRT--------------------------------DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWD 351 (498)
T ss_pred EEEEeec--------------------------------CCccchhhhhhhcccceeecCCCCchheeecccCcceeeee
Confidence 9999982 233344556688899999999965 5789999999999999
Q ss_pred ccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeCC-----CcEEEEEeec--cCcCE--EE
Q 000654 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD-----GKQLKMIKEH--IGRGI--WR 353 (1371)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~-----g~~l~~l~~h--~~~~V--~s 353 (1371)
++.-....+ ++ .....|...|.++.|+ +..|+|-+.|..|+|||.. -.++.++... .++.+ .-
T Consensus 352 ~R~l~~K~s----p~--lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fK 425 (498)
T KOG4328|consen 352 LRQLRGKAS----PF--LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFK 425 (498)
T ss_pred hhhhcCCCC----cc--eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchh
Confidence 987654211 11 2667899999999999 3569999999999999972 1233333321 11222 34
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 354 CLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 354 l~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
.+|.|+..+++.|-.-..|-++|-++
T Consensus 426 A~W~P~~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 426 AAWDPDYNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred heeCCCccEEEEeccCcceeEEcCCC
Confidence 56999999999999988999998854
No 165
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.3e-14 Score=149.98 Aligned_cols=293 Identities=12% Similarity=0.129 Sum_probs=195.8
Q ss_pred EEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCC
Q 000654 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1371)
Q Consensus 135 I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~ 214 (1371)
..|+.|++ .|.+||+|..||.|.|||+.+...-+.+..|.. .+.++++ +++|.+|++++.|..|.+||+.
T Consensus 26 a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-pi~sl~W---S~dgr~LltsS~D~si~lwDl~--- 95 (405)
T KOG1273|consen 26 AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVR-PITSLCW---SRDGRKLLTSSRDWSIKLWDLL--- 95 (405)
T ss_pred cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhcccc-ceeEEEe---cCCCCEeeeecCCceeEEEecc---
Confidence 78999999 999999999999999999998776555555544 4667777 8999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCC-EEEEEeCCCcEEEEEccCCcccCC
Q 000654 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDS 293 (1371)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~-~LaS~s~Dg~VriWdl~~~~~~~~ 293 (1371)
.+.+++++. ...+|+.+.|+|... ..+.+-.+..-.+-++..+...
T Consensus 96 ------------------------------~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-- 142 (405)
T KOG1273|consen 96 ------------------------------KGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-- 142 (405)
T ss_pred ------------------------------CCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee--
Confidence 455666654 578999999999543 3333333334555555543220
Q ss_pred CCceeeeceEeecCCc-cEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECC
Q 000654 294 DSIEEVGSSVLYGHNA-RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1371)
Q Consensus 294 ~~~~~~~~~~~~gh~~-~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~D 369 (1371)
.+. ..-.+... ...+..|. |+++++|...|.+.|++. +.+++..++--....|..+.|+..|++|++-..|
T Consensus 143 ----~Lp-~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 143 ----VLP-KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred ----ecc-CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC
Confidence 000 00001001 11122344 799999999999999999 7788888877663369999999999999999999
Q ss_pred CcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeec
Q 000654 370 SAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (1371)
Q Consensus 370 g~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~ 449 (1371)
..||.|+++.-......+... +..++.+ ..+ .-.-++++|+.+|.++++++ ..-..+-+|+
T Consensus 218 RvIR~ye~~di~~~~r~~e~e-----~~~K~qD-----------vVN--k~~Wk~ccfs~dgeYv~a~s-~~aHaLYIWE 278 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGEVE-----PEHKLQD-----------VVN--KLQWKKCCFSGDGEYVCAGS-ARAHALYIWE 278 (405)
T ss_pred ceEEEEehhhhcccCccCCcC-----hhHHHHH-----------HHh--hhhhhheeecCCccEEEecc-ccceeEEEEe
Confidence 999999984211000000000 0000000 000 01236788999998887765 3334444788
Q ss_pred CCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcC
Q 000654 450 MDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1371)
Q Consensus 450 ~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~ 503 (1371)
...+...+++.+..+.....++..+- +.++..-..|.+++|....
T Consensus 279 ~~~GsLVKILhG~kgE~l~DV~whp~---------rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 279 KSIGSLVKILHGTKGEELLDVNWHPV---------RPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred cCCcceeeeecCCchhheeecccccc---------eeeeeeccCCceEEEEeec
Confidence 77777778888887776655444222 2233344789999998753
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.7e-15 Score=186.68 Aligned_cols=289 Identities=17% Similarity=0.322 Sum_probs=207.3
Q ss_pred EEEEEEecCCCCCCCCEEEEEe-----------CCcEEEEECC--CC----eEEEEEEeecCccEEEEEeeccccccCCC
Q 000654 21 SALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLE--AG----TLIRPFQVFHGIRLHGISCNFINCTEGSV 83 (1371)
Q Consensus 21 tavafs~~pd~~~~~~llaaG~-----------dg~I~Iwd~~--sg----~~l~~~~~~~~~~I~~i~~s~~~~~~~pd 83 (1371)
.-++++ |+ + -.++++|. +.++.||.+. +. +.+..+.. ..+.+.++|. +.
T Consensus 10 a~~awS--p~--~-~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s--~~rF~kL~W~-------~~ 75 (1049)
T KOG0307|consen 10 ATFAWS--PA--S-PPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS--SNRFNKLAWG-------SY 75 (1049)
T ss_pred ceEEec--CC--C-chhhHHHhhhhccccccccccccceeeecccCccccccccccccc--cccceeeeec-------cc
Confidence 446778 77 2 33666653 3556666653 22 24455553 3478899998 43
Q ss_pred CcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEE
Q 000654 84 STRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (1371)
Q Consensus 84 g~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vW 162 (1371)
|.....+|+.+. ||.|.+||..... .. .....+.+...|.+.|+.+.|+++ .+++||+|+.||.|.||
T Consensus 76 g~~~~GlIaGG~edG~I~ly~p~~~~-~~--------~~~~~la~~~~h~G~V~gLDfN~~--q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 76 GSHSHGLIAGGLEDGNIVLYDPASII-AN--------ASEEVLATKSKHTGPVLGLDFNPF--QGNLLASGADDGEILIW 144 (1049)
T ss_pred CCCccceeeccccCCceEEecchhhc-cC--------cchHHHhhhcccCCceeeeecccc--CCceeeccCCCCcEEEe
Confidence 321122555554 8999999987521 01 125677888899999999999992 45599999999999999
Q ss_pred ECCCCeEEEEEecC-CcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000654 163 DISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1371)
Q Consensus 163 d~~~~~~~~~l~~~-~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1371)
|+.+.+.-...... ....+.++.| +-....+|++++.+|.+.|||++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr------------------------------ 192 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLR------------------------------ 192 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEecc--chhhhHHhhccCCCCCceecccc------------------------------
Confidence 99875543333211 1222444433 22345689999999999999999
Q ss_pred cccceeeEEEEecccC--CEEEEEEcCCC-CEEEEEeCCC---cEEEEEccCCcccCCCCceeeeceEeecCCccEEEEE
Q 000654 242 QQHTAVNLFRLVGHEG--SIFRIEWSSCG-SKLVSVSDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (1371)
Q Consensus 242 ~~~~~~~~~~l~gH~~--~I~~v~~spdg-~~LaS~s~Dg---~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~ 315 (1371)
..+++..+..|.+ .+..|+|+|+. ..|+++++|. .|.+||++....+ ++ ++.+|...|.++.
T Consensus 193 ---~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP----~k-----~~~~H~~Gilsls 260 (1049)
T KOG0307|consen 193 ---KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP----LK-----ILEGHQRGILSLS 260 (1049)
T ss_pred ---CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc----hh-----hhcccccceeeec
Confidence 3445555555544 46789999976 4677776653 5999999875442 32 7789999999999
Q ss_pred Ec---CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCC-EEEEEECCCcEEEEEcCC
Q 000654 316 LT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 316 ~s---~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~-~L~Tgg~Dg~I~lwdl~~ 379 (1371)
|+ +.+|+|++.|+.|.+|+. +|+.+..+..... .+..+.|+|... .++.++.||.|-|+.+.+
T Consensus 261 Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 98 479999999999999999 8999999987555 799999999766 888899999999999954
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.61 E-value=2e-11 Score=146.51 Aligned_cols=370 Identities=19% Similarity=0.316 Sum_probs=250.3
Q ss_pred eccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe-EEEEEecCCcceEEEEEeeccCCCCc-EEEE-EeCCC
Q 000654 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNLEAL-RIAS-GTIYN 203 (1371)
Q Consensus 127 ~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~-~~~~l~~~~~~~v~s~~~~~~s~d~~-~Las-gs~dg 203 (1371)
....|...|..+.|.+ .+..++.++.|+.+.+|+...+. ....+.......+..+.+. .+++. .++. +..++
T Consensus 60 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 60 LLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS--SPDGNSILLASSSLDG 134 (466)
T ss_pred eeeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE--CCCcceEEeccCCCCc
Confidence 4557889999999998 88999999999999999998886 5555555332223333332 34444 4444 34489
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccc-eeeEEEEecccCCEEEEEEcCCCCEEEEEeC-CCcEE
Q 000654 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT-AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (1371)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~-~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-Dg~Vr 281 (1371)
.+.+|+.. . ......+..|...|..+.|+|++..+++++. |+.++
T Consensus 135 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (466)
T COG2319 135 TVKLWDLS---------------------------------TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181 (466)
T ss_pred cEEEEEec---------------------------------CCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceE
Confidence 99999998 3 5667788899999999999999999998886 99999
Q ss_pred EEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--C-EEEEEeCCCeEEEEeC-CCcEEE-EEeeccCcCEEEEEE
Q 000654 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--S-FIITAGEDCTCRVWGS-DGKQLK-MIKEHIGRGIWRCLY 356 (1371)
Q Consensus 282 iWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~-~L~Sgs~Dg~I~VWd~-~g~~l~-~l~~h~~~~V~sl~~ 356 (1371)
+|++..... . ..+.+|...|.+++|.+ . .+++++.|+.+++||. .+..+. .+..|... . -..|
T Consensus 182 ~~~~~~~~~-----~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~-~~~~ 249 (466)
T COG2319 182 LWDLRTGKP-----L-----STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS-V-VSSF 249 (466)
T ss_pred EEEcCCCce-----E-----EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc-e-eEeE
Confidence 999987433 2 26677999999999983 3 5555699999999998 577777 68888873 3 3379
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEE
Q 000654 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA 436 (1371)
Q Consensus 357 spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~ 436 (1371)
+|++.++++++.|+.+++|++..... .+.. ..+|...+.++.|.|++..+++
T Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~----------------~~~~------------~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 250 SPDGSLLASGSSDGTIRLWDLRSSSS----------------LLRT------------LSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred CCCCCEEEEecCCCcEEEeeecCCCc----------------EEEE------------EecCCccEEEEEECCCCCEEEE
Confidence 99998999999999999999953210 0111 1345678999999996655544
Q ss_pred -EcCCcEEEEEeecCCCceeEEeEe-ecCCccEEEEeecCCCCCCCCCCCCEEEEE-eCCCcEEEEEEcCCccccceeee
Q 000654 437 -TNHGYLYHTKLCDMDSVNWNKILQ-VSEGMPIICMDLLSNEPKYPCGIDDWVALG-DGKGNMTIVRVVGDVHTPQLSFT 513 (1371)
Q Consensus 437 -t~~G~i~~~~l~~~~~~~w~~i~~-~~~~~~I~~ld~~~~~~~~s~~~~~lla~g-s~dG~I~iwdi~~~~~~~~~~~~ 513 (1371)
+.++.+. +|+........... ..+...+..+.. . ++...++.+ ..|+.+.+|++......
T Consensus 302 ~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~d~~~~~~~~~~~~~~------ 364 (466)
T COG2319 302 GSSDGTVR---LWDLETGKLLSSLTLKGHEGPVSSLSF-S-------PDGSLLVSGGSDDGTIRLWDLRTGKPL------ 364 (466)
T ss_pred eeCCCcEE---EEEcCCCceEEEeeecccCCceEEEEE-C-------CCCCEEEEeecCCCcEEeeecCCCcee------
Confidence 3444444 44433322111111 122224555544 2 112344444 67789999998765411
Q ss_pred eeeccCcccceeEEEEeecCCCcEEEE-EcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecCC
Q 000654 514 FTWSAGIERQLLGTYWCKSLGHRFIFT-ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFED 592 (1371)
Q Consensus 514 ~~~~~~~~~~il~~~~~~s~d~~~L~s-~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg 592 (1371)
...... ..... +.+.+ ....+. +..++.+.+|+...... ...+. .+...+....+++++
T Consensus 365 ~~~~~~--~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~ 424 (466)
T COG2319 365 KTLEGH--SNVLS--VSFSP-DGRVVSSGSTDGTVRLWDLSTGSL--------------LRNLD-GHTSRVTSLDFSPDG 424 (466)
T ss_pred EEecCC--ceEEE--EEECC-CCCEEEEecCCCceEEEecccCee--------------eeecc-CCCCcEEEEEECCCC
Confidence 111111 11222 23444 333443 68889999999875421 11111 111678899999999
Q ss_pred CEEEEecCCCeEEEEEcCc
Q 000654 593 EVLFCGDLRGNLVLFPLLR 611 (1371)
Q Consensus 593 ~lLatGs~dGtI~Iwd~~~ 611 (1371)
..++.++.++++.+|+...
T Consensus 425 ~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 425 KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEecCCCcEEEEeccC
Confidence 9999999999999999775
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=2.2e-14 Score=160.48 Aligned_cols=242 Identities=14% Similarity=0.158 Sum_probs=168.5
Q ss_pred EEEEEEecCC-CCCCCCEEEEEe-CCcEEEEECCCC---eEEEEE------------------EeecCccEEEEEeeccc
Q 000654 21 SALCFVHLPS-HLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPF------------------QVFHGIRLHGISCNFIN 77 (1371)
Q Consensus 21 tavafs~~pd-~~~~~~llaaG~-dg~I~Iwd~~sg---~~l~~~------------------~~~~~~~I~~i~~s~~~ 77 (1371)
.|+++.+-|. +.+.++|+|.|+ ++.|.|||+.=- .+...+ .+|.+ .|..+.|.
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~n--- 252 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSWN--- 252 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHhc---
Confidence 4566553222 335678999999 899999998421 000000 12222 45556655
Q ss_pred cccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECC
Q 000654 78 CTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (1371)
Q Consensus 78 ~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~D 156 (1371)
-.- ..+||+++ |++|++||+.+ .++..++..|.+.|.+++|+| ....+|++|+.|
T Consensus 253 ----~~~---~nVLaSgsaD~TV~lWD~~~---------------g~p~~s~~~~~k~Vq~l~wh~--~~p~~LLsGs~D 308 (463)
T KOG0270|consen 253 ----RNF---RNVLASGSADKTVKLWDVDT---------------GKPKSSITHHGKKVQTLEWHP--YEPSVLLSGSYD 308 (463)
T ss_pred ----ccc---ceeEEecCCCceEEEEEcCC---------------CCcceehhhcCCceeEEEecC--CCceEEEecccc
Confidence 222 14666666 99999999997 456677778999999999998 366899999999
Q ss_pred CcEEEEECCCCe---EEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCC
Q 000654 157 NSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1371)
Q Consensus 157 g~I~vWd~~~~~---~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1371)
++|.+.|.+... ...++.+. +-.+.+.+. ....+++++.||.|+-+|++
T Consensus 309 ~~V~l~D~R~~~~s~~~wk~~g~----VEkv~w~~~--se~~f~~~tddG~v~~~D~R---------------------- 360 (463)
T KOG0270|consen 309 GTVALKDCRDPSNSGKEWKFDGE----VEKVAWDPH--SENSFFVSTDDGTVYYFDIR---------------------- 360 (463)
T ss_pred ceEEeeeccCccccCceEEeccc----eEEEEecCC--CceeEEEecCCceEEeeecC----------------------
Confidence 999999997421 12222222 223333322 34678888999999999998
Q ss_pred cceeeecccccceeeEEEEecccCCEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCc---
Q 000654 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--- 309 (1371)
Q Consensus 234 ~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg-~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~--- 309 (1371)
..++++..+..|.+.|.+|.+++.- .+++|++.|+.|++|++...... ....|..
T Consensus 361 ----------~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~-----------~v~~~~~~~~ 419 (463)
T KOG0270|consen 361 ----------NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK-----------SVKEHSFKLG 419 (463)
T ss_pred ----------CCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-----------cccccccccc
Confidence 2457889999999999999999854 57899999999999999875441 2222322
Q ss_pred cEEEEEEc---CCEEEEEeCCCeEEEEeC-CCcE
Q 000654 310 RVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQ 339 (1371)
Q Consensus 310 ~I~~l~~s---~~~L~Sgs~Dg~I~VWd~-~g~~ 339 (1371)
+..|.++. +.+++.|+..+.++|||+ +...
T Consensus 420 rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 420 RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 24455554 468999999999999998 5443
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.61 E-value=2e-11 Score=146.49 Aligned_cols=366 Identities=22% Similarity=0.345 Sum_probs=250.6
Q ss_pred CcccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe-EEEEEEeecCccEEEEEe-eccccccCCCCcceeeE
Q 000654 14 GQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-LIRPFQVFHGIRLHGISC-NFINCTEGSVSTRVTFE 90 (1371)
Q Consensus 14 ~~h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~-~l~~~~~~~~~~I~~i~~-s~~~~~~~pdg~~~~~~ 90 (1371)
..|...|.++.|. +. +..++.+. ++.+.+|+...+. .+..+.......+..+.+ . +++. ..
T Consensus 62 ~~~~~~i~~~~~~--~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~~ 125 (466)
T COG2319 62 RGHEDSITSIAFS--PD----GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS-------PDGN---SI 125 (466)
T ss_pred eeccceEEEEEEC--CC----CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEEC-------CCcc---eE
Confidence 3477889999999 77 67777766 8999999998886 566666533235666666 4 6652 23
Q ss_pred EEE-EC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC-CCcEEEEECCCC
Q 000654 91 VAL-FG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNS 167 (1371)
Q Consensus 91 la~-~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~-Dg~I~vWd~~~~ 167 (1371)
++. .. ++.+.+|++... ......+..|...|.+++|+| ++..+++++. |+.+++|++..+
T Consensus 126 ~~~~~~~d~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 126 LLASSSLDGTVKLWDLSTP--------------GKLIRTLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred EeccCCCCccEEEEEecCC--------------CeEEEEEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCC
Confidence 443 33 799999999741 356677889999999999999 8888888885 999999999987
Q ss_pred eEEEEEecCCcceEEEEEeeccCCCCc-EEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccce
Q 000654 168 SIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1371)
Q Consensus 168 ~~~~~l~~~~~~~v~s~~~~~~s~d~~-~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~ 246 (1371)
..+..+.. +...+..+.+ ++++. .+++++.|+.|++||.. ..
T Consensus 189 ~~~~~~~~-~~~~v~~~~~---~~~~~~~~~~~~~d~~i~~wd~~---------------------------------~~ 231 (466)
T COG2319 189 KPLSTLAG-HTDPVSSLAF---SPDGGLLIASGSSDGTIRLWDLS---------------------------------TG 231 (466)
T ss_pred ceEEeecc-CCCceEEEEE---cCCcceEEEEecCCCcEEEEECC---------------------------------CC
Confidence 77777766 3445667766 46666 55556999999999766 33
Q ss_pred eeEE-EEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEEEE
Q 000654 247 VNLF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIIT 323 (1371)
Q Consensus 247 ~~~~-~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~S 323 (1371)
..+. .+.+|.... -..|+|++.++++++.|+.+++|+...... .+ ....+|...+.++.|.+ ..+++
T Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~--~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 232 KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-------LL--RTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-------EE--EEEecCCccEEEEEECCCCCEEEE
Confidence 4444 577888775 448999999999999999999999987543 11 13378899999999984 78888
Q ss_pred EeCCCeEEEEeC-CCcEEEEEe--eccCcCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCCcccccCCCccccccCCcc
Q 000654 324 AGEDCTCRVWGS-DGKQLKMIK--EHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTE 399 (1371)
Q Consensus 324 gs~Dg~I~VWd~-~g~~l~~l~--~h~~~~V~sl~~spdg~~L~Tg-g~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~ 399 (1371)
++.|+.+++|+. ......... .|.. .+..+.|.+++..++.+ ..|+.+.+|++.... .
T Consensus 302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----------------~ 363 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLSSLTLKGHEG-PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-----------------P 363 (466)
T ss_pred eeCCCcEEEEEcCCCceEEEeeecccCC-ceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-----------------e
Confidence 999999999998 455455544 6776 59999994332555555 678999999985321 0
Q ss_pred EEEeeecCCccceeeccCCCccEEEEEEecCCcEEEE--EcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCC
Q 000654 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA--TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEP 477 (1371)
Q Consensus 400 i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~--t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~ 477 (1371)
..... .. ..+..+.+.+ ...+.. ..++.+..|.. ............. ..+.....
T Consensus 364 ~~~~~------------~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~----- 420 (466)
T COG2319 364 LKTLE------------GH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDL---STGSLLRNLDGHT-SRVTSLDF----- 420 (466)
T ss_pred eEEec------------CC-ceEEEEEECC-CCCEEEEecCCCceEEEec---ccCeeeeeccCCC-CcEEEEEE-----
Confidence 00000 00 1156666666 432332 34555554433 2222111111110 34444433
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEEEcC
Q 000654 478 KYPCGIDDWVALGDGKGNMTIVRVVG 503 (1371)
Q Consensus 478 ~~s~~~~~lla~gs~dG~I~iwdi~~ 503 (1371)
.+.+..++.+..++.+++|++..
T Consensus 421 ---~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 421 ---SPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ---CCCCcEEEEecCCCcEEEEeccC
Confidence 24566777788999999999875
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.61 E-value=9.7e-14 Score=149.15 Aligned_cols=260 Identities=17% Similarity=0.254 Sum_probs=182.6
Q ss_pred cEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeecc-CCCCcEEEEEEEee--
Q 000654 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKV-- 143 (1371)
Q Consensus 67 ~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~-gh~~~I~~v~fsp~-- 143 (1371)
-.+++.|+ |||. .+|+...|..+++|++-........-.+ ...+....++ ...+.|.+.+|-+.
T Consensus 51 f~kgckWS-------PDGS---ciL~~sedn~l~~~nlP~dlys~~~~~~---~~~~~~~~~r~~eg~tvydy~wYs~M~ 117 (406)
T KOG2919|consen 51 FLKGCKWS-------PDGS---CILSLSEDNCLNCWNLPFDLYSKKADGP---LNFSKHLSYRYQEGETVYDYCWYSRMK 117 (406)
T ss_pred hhccceeC-------CCCc---eEEeecccCeeeEEecChhhcccCCCCc---cccccceeEEeccCCEEEEEEeeeccc
Confidence 46778899 9994 6777777999999999754322211111 1111111111 12356788887531
Q ss_pred --cCCCcEEEEEECCCcEEEEECCCCeEEEEEecC----CcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcc-cCCcc
Q 000654 144 --CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP----ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD-WEHVA 216 (1371)
Q Consensus 144 --~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~----~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~-~~~~~ 216 (1371)
.++-.++++.+.|.-|.+||..+|+....+..- +-....++.| ++||.+|++|. .+.|+++|.. .++.-
T Consensus 118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F---s~DGeqlfaGy-krcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF---SPDGEQLFAGY-KRCIRVFDTSRPGRDC 193 (406)
T ss_pred cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEe---cCCCCeEeecc-cceEEEeeccCCCCCC
Confidence 125568899999999999999999887766531 1223456666 89999999886 6899999984 11111
Q ss_pred ccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcccCCCC
Q 000654 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1371)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spd-g~~LaS~s~Dg~VriWdl~~~~~~~~~~ 295 (1371)
+. -....+.-.+..+-|.+++|+|- .+.++.++.-.++-|+.-.....
T Consensus 194 ~v--------------------------y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----- 242 (406)
T KOG2919|consen 194 PV--------------------------YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----- 242 (406)
T ss_pred cc--------------------------hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-----
Confidence 00 00000112245678899999994 56899999999998888766554
Q ss_pred ceeeeceEeecCCccEEEEEEc--CCEEEEEeC-CCeEEEEeC--CCcEEEEEeeccCcCEEEEEE--cCCCCEEEEEEC
Q 000654 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRVWGS--DGKQLKMIKEHIGRGIWRCLY--DSLSSLLVTAGF 368 (1371)
Q Consensus 296 ~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~-Dg~I~VWd~--~g~~l~~l~~h~~~~V~sl~~--spdg~~L~Tgg~ 368 (1371)
+ ..+.+|.+.|+.++|. ++.|++|.. |-.|..||+ .+.++..+..|.+..=..|-| .|++++|++|+.
T Consensus 243 l-----~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t 317 (406)
T KOG2919|consen 243 L-----QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT 317 (406)
T ss_pred e-----eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC
Confidence 2 3778999999999998 688888864 678999999 677888888887644455665 688999999999
Q ss_pred CCcEEEEEcCC
Q 000654 369 DSAIKVHQFQA 379 (1371)
Q Consensus 369 Dg~I~lwdl~~ 379 (1371)
||.|++||+++
T Consensus 318 dG~V~vwdlk~ 328 (406)
T KOG2919|consen 318 DGSVRVWDLKD 328 (406)
T ss_pred CccEEEEecCC
Confidence 99999999953
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.60 E-value=4.6e-13 Score=148.42 Aligned_cols=350 Identities=16% Similarity=0.167 Sum_probs=213.1
Q ss_pred CCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecc
Q 000654 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1371)
Q Consensus 176 ~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1371)
|....++++.|+..+. ..+++|+.|..|++|.+....-.. . ..+-.....+..|
T Consensus 11 H~~~pv~s~dfq~n~~--~~laT~G~D~~iriW~v~r~~~~~------------~------------~~~V~y~s~Ls~H 64 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSL--NKLATAGGDKDIRIWKVNRSEPGG------------G------------DMKVEYLSSLSRH 64 (434)
T ss_pred cCCCceEEEEeccCcc--cceecccCccceeeeeeeecCCCC------------C------------ceeEEEeecccCC
Confidence 3445678888865442 399999999999999987221100 0 0134556778899
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCccc------CCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCC
Q 000654 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK------DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1371)
Q Consensus 256 ~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~------~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~D 327 (1371)
...|+.|.|+|+|..||||+++|.|.+|....-... .......+....+.+|...|+.++|+ +.++++++.|
T Consensus 65 ~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d 144 (434)
T KOG1009|consen 65 TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD 144 (434)
T ss_pred cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc
Confidence 999999999999999999999999999988731110 00001111114788999999999998 5899999999
Q ss_pred CeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-CcccccCCCccccccCCccEEEee-
Q 000654 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIK- 404 (1371)
Q Consensus 328 g~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~-~~~~l~~~~~~~~~~~~~~i~s~~- 404 (1371)
.++++||+ .|+.+..+..|... |..++|.|-++++++-+.|...+.+++.-. .++... +.. +..-.
T Consensus 145 ns~~l~Dv~~G~l~~~~~dh~~y-vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~-~~~---------m~~~~~ 213 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLLAILDDHEHY-VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHG-LDI---------MPAKAF 213 (434)
T ss_pred ceEEEEEeccceeEeeccccccc-cceeecchhhhhhhhhccCcccceeeeeeeeeeeeee-eeE---------eeeccc
Confidence 99999999 89999999999994 999999999999999999987777776321 111000 000 00000
Q ss_pred ecCCccceeecc--CCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEeEeecC-CccEEEEeecCCCCCCCC
Q 000654 405 IPNFSEQIRLTD--SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSE-GMPIICMDLLSNEPKYPC 481 (1371)
Q Consensus 405 ~~~~~~~~~~~~--~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~-~~~I~~ld~~~~~~~~s~ 481 (1371)
.+...+..+.+. .-....+.++|+|+|.+|+.. .|.+. ........-..++.... ..++..+ .+
T Consensus 214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP-ag~~~---~g~~~~~n~tYvfsrk~l~rP~~~l---------p~ 280 (434)
T KOG1009|consen 214 NEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP-AGLFK---VGGGVFRNTSYVFSRKDLKRPAARL---------PS 280 (434)
T ss_pred CCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc-cceee---eCCceeeceeEeeccccccCceeec---------CC
Confidence 000001111111 112356788999999887753 33221 11000001111222111 1222222 12
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCcccc
Q 000654 482 GIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (1371)
Q Consensus 482 ~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~ 561 (1371)
+....+++... -..|.+..-... ..+.. + |-+-.++.+ ....++++|.+...
T Consensus 281 ~~k~~lavr~~---pVy~elrp~~~~--------------~~~~~--l---pyrlvfaiA-t~~svyvydtq~~~----- 332 (434)
T KOG1009|consen 281 PKKPALAVRFS---PVYYELRPLSSE--------------KFLFV--L---PYRLVFAIA-TKNSVYVYDTQTLE----- 332 (434)
T ss_pred CCcceEEEEee---eeEEEecccccc--------------ccccc--c---ccceEEEEe-ecceEEEecccccc-----
Confidence 34445555542 122333211000 00111 1 222233333 45678999876432
Q ss_pred ccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcc
Q 000654 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1371)
Q Consensus 562 ~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~ 612 (1371)
.+..... -|-.+||.++|++||..|++.|.||..-+-.++..
T Consensus 333 ------P~~~v~n---ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 333 ------PLAVVDN---IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred ------ceEEEee---eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 1233333 37788999999999999999999999887776653
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.60 E-value=4.9e-14 Score=149.21 Aligned_cols=270 Identities=12% Similarity=0.162 Sum_probs=196.6
Q ss_pred CccEEEEeCCCCc----------ccCcEEEEEEEecCCCCCCCCEEEEEeC--------CcEEEEECCC---------Ce
Q 000654 3 KKDLSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGSG--------SQVLLYDLEA---------GT 55 (1371)
Q Consensus 3 D~tV~iWdl~~~~----------h~~~Vtavafs~~pd~~~~~~llaaG~d--------g~I~Iwd~~s---------g~ 55 (1371)
|+.|.+-++..+. |.+.|..++-+ |- ..++|+++.+ -.+.||.+.. -+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~--P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASS--PF---DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcC--CC---CCceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence 5667777776654 78899999998 85 3577877663 3478998853 23
Q ss_pred EEEEEE-eecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCc
Q 000654 56 LIRPFQ-VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1371)
Q Consensus 56 ~l~~~~-~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~ 134 (1371)
++..+. .+.+ +|.++.|. |++ ..+++-.+..|.+|+++..... .+ .-....-.+|...
T Consensus 114 ~v~~Ldteavg-~i~cvew~-------Pns----~klasm~dn~i~l~~l~ess~~-va--------ev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 114 CVASLDTEAVG-KINCVEWE-------PNS----DKLASMDDNNIVLWSLDESSKI-VA--------EVLSSESAEMRHS 172 (370)
T ss_pred HhhcCCHHHhC-ceeeEEEc-------CCC----CeeEEeccCceEEEEcccCcch-he--------eecccccccccce
Confidence 334443 2234 89999999 887 6788888999999999864310 00 0011111236778
Q ss_pred EEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCC-CcEEEEEeCCCeEEEEEcccC
Q 000654 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWE 213 (1371)
Q Consensus 135 I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d-~~~Lasgs~dg~I~vWd~~~~ 213 (1371)
.++-+|+|. .+++.+++. .|+++..||+++.+....+...++..+..+.| +|+ ..+|++++.||.|++||.+
T Consensus 173 ftsg~WspH-Hdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDf---Npnkq~~lvt~gDdgyvriWD~R-- 245 (370)
T KOG1007|consen 173 FTSGAWSPH-HDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDF---NPNKQHILVTCGDDGYVRIWDTR-- 245 (370)
T ss_pred ecccccCCC-CccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccC---CCCceEEEEEcCCCccEEEEecc--
Confidence 889999983 377778766 48999999999998888888888777888877 554 4578999999999999998
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCccc-
Q 000654 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWK- 291 (1371)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg-~~LaS~s~Dg~VriWdl~~~~~~- 291 (1371)
.+..++..+.+|..+|.+|.|+|.. ++++|++.|..|.+|....-...
T Consensus 246 ------------------------------~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 246 ------------------------------KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred ------------------------------CCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 2566788999999999999999964 57789999999999986542210
Q ss_pred ------------CCC---Cceeee---ceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeC
Q 000654 292 ------------DSD---SIEEVG---SSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (1371)
Q Consensus 292 ------------~~~---~~~~~~---~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~ 335 (1371)
... ..+++. ..++..|...|++++|+ |-.+|+-+.||.+.|=.+
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 000 011110 02667899999999998 567788899999988665
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.60 E-value=9.4e-14 Score=149.23 Aligned_cols=276 Identities=16% Similarity=0.195 Sum_probs=197.8
Q ss_pred EEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC--------C----eEEEEEEeecCccEEEEEeeccccccCCCCcce
Q 000654 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--------G----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (1371)
Q Consensus 21 tavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~s--------g----~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~ 87 (1371)
-...++ || |..+++-+ +..+.+|++.. + +...+++..++..|...+|-.......|+.
T Consensus 53 kgckWS--PD----GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t--- 123 (406)
T KOG2919|consen 53 KGCKWS--PD----GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST--- 123 (406)
T ss_pred ccceeC--CC----CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc---
Confidence 456788 88 66666655 89999999842 1 223445555667888888874444445775
Q ss_pred eeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCC---cEEEEEEEeecCCCcEEEEEECCCcEEEEE
Q 000654 88 TFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH---WVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1371)
Q Consensus 88 ~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~---~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd 163 (1371)
.++++.+ +.-|++||.-++. ++.-...-.|.+ ...+++|+| ||.+|..| ..++|+++|
T Consensus 124 -~l~a~ssr~~PIh~wdaftG~-------------lraSy~~ydh~de~taAhsL~Fs~---DGeqlfaG-ykrcirvFd 185 (406)
T KOG2919|consen 124 -NLFAVSSRDQPIHLWDAFTGK-------------LRASYRAYDHQDEYTAAHSLQFSP---DGEQLFAG-YKRCIRVFD 185 (406)
T ss_pred -ceeeeccccCceeeeeccccc-------------cccchhhhhhHHhhhhheeEEecC---CCCeEeec-ccceEEEee
Confidence 4666655 8999999998754 222222223444 347899999 99999755 578999999
Q ss_pred C-CCCeEE---EEEe---cCCcceEEEEEeeccCCC-CcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcc
Q 000654 164 I-SNSSII---LEVH---SPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1371)
Q Consensus 164 ~-~~~~~~---~~l~---~~~~~~v~s~~~~~~s~d-~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1371)
+ +.|+.- .++. .....++.++++ +|. ...++.|+.-..+-|+.-.
T Consensus 186 t~RpGr~c~vy~t~~~~k~gq~giisc~a~---sP~~~~~~a~gsY~q~~giy~~~------------------------ 238 (406)
T KOG2919|consen 186 TSRPGRDCPVYTTVTKGKFGQKGIISCFAF---SPMDSKTLAVGSYGQRVGIYNDD------------------------ 238 (406)
T ss_pred ccCCCCCCcchhhhhcccccccceeeeeec---cCCCCcceeeecccceeeeEecC------------------------
Confidence 9 444321 1111 122345555555 454 4478889888888888766
Q ss_pred eeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC-CCcEEEEEccCCcccCCCCceeeeceEeecCCc-cEEE
Q 000654 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA-RVWD 313 (1371)
Q Consensus 236 ~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~-~I~~ 313 (1371)
...++..+.||.+.|+.+.|.++|+.|.+|+. |-.|-.||++..+.+ + ..+..|.. .--.
T Consensus 239 ---------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p----v-----~~L~rhv~~TNQR 300 (406)
T KOG2919|consen 239 ---------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP----V-----YALERHVGDTNQR 300 (406)
T ss_pred ---------CCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch----h-----hhhhhhccCccce
Confidence 56778888899999999999999999999875 678999999986542 1 24555554 2334
Q ss_pred EEEc----CCEEEEEeCCCeEEEEeC-C-CcEEEEEeeccCcCEEEEEEcCCCCEEEEEECC
Q 000654 314 CCLT----DSFIITAGEDCTCRVWGS-D-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1371)
Q Consensus 314 l~~s----~~~L~Sgs~Dg~I~VWd~-~-g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~D 369 (1371)
+.|. +++|++|+.||.|++||+ + |..+..+..|.. .+..++++|--.+++|++..
T Consensus 301 I~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 301 ILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 4554 789999999999999999 3 777888888887 69999999998889988754
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.5e-14 Score=156.93 Aligned_cols=285 Identities=14% Similarity=0.172 Sum_probs=193.5
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCC
Q 000654 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1371)
Q Consensus 36 ~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~ 114 (1371)
..+|++- .|.|++||..+|+.+..|+++.. .+.+++|.... .|. .++.++.||+|++||++...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~-~~N~vrf~~~d---s~h-----~v~s~ssDG~Vr~wD~Rs~~------ 105 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-TTNGVRFISCD---SPH-----GVISCSSDGTVRLWDIRSQA------ 105 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC-cccceEEecCC---CCC-----eeEEeccCCeEEEEEeecch------
Confidence 3455554 79999999999999999999887 78999998321 233 46666679999999998643
Q ss_pred CCccceeeeeeeeccCCC-CcEEEEEEEeecCCCcEEEEEEC----CCcEEEEECCCCeE-EEEEecCCcceEEEEEeec
Q 000654 115 QPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCS----DNSIRVWDISNSSI-ILEVHSPERCLLYSMKLWG 188 (1371)
Q Consensus 115 ~~~~~v~~~~~~~l~gh~-~~I~~v~fsp~~~dg~~Latgs~----Dg~I~vWd~~~~~~-~~~l~~~~~~~v~s~~~~~ 188 (1371)
.........+. .+-.+++.+. .++.+++|.. +-.|.+||++..+. +..+...+..-+.+++|++
T Consensus 106 -------e~a~~~~~~~~~~~f~~ld~nc---k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 106 -------ESARISWTQQSGTPFICLDLNC---KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred -------hhhheeccCCCCCcceEeeccC---cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 12233334454 4566777665 6677887754 77899999988776 7777766667788999987
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC
Q 000654 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1371)
Q Consensus 189 ~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg 268 (1371)
. +.++|++|+.||.|.|+|+... .....+.....|...|.++.|..++
T Consensus 176 ~--~pnlLlSGSvDGLvnlfD~~~d------------------------------~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 176 S--DPNLLLSGSVDGLVNLFDTKKD------------------------------NEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred C--CCCeEEeecccceEEeeecCCC------------------------------cchhhHHHhhcccceeeeeeeecCC
Confidence 5 4579999999999999999821 1222333344588889999998776
Q ss_pred -CEEEEEeCCCcEEEEEccCCcccCCCCceeeec---eEeecCCccEEEEEEc-CCEEEEEeC-CCeEEEEeC----C--
Q 000654 269 -SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS---SVLYGHNARVWDCCLT-DSFIITAGE-DCTCRVWGS----D-- 336 (1371)
Q Consensus 269 -~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~---~~~~gh~~~I~~l~~s-~~~L~Sgs~-Dg~I~VWd~----~-- 336 (1371)
+.+.+-+...+..+|++..+..........+.. +....-..-|.+..-. ...++.++. -++..++-+ .
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~ 303 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS 303 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccc
Confidence 568888999999999999876421000000000 0000000111111111 245555554 455555543 2
Q ss_pred -CcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 337 -GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 337 -g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
++.+..+.++....|+++.|...+..+.|||.||.+.+|..
T Consensus 304 ~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 304 LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 34566777755557889999888899999999999999996
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=5.4e-14 Score=152.65 Aligned_cols=290 Identities=15% Similarity=0.189 Sum_probs=184.8
Q ss_pred cEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcC--CCCEE
Q 000654 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS--CGSKL 271 (1371)
Q Consensus 194 ~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~sp--dg~~L 271 (1371)
..+|++-..|.|++||.. +++.+..+++|...+..++|.. ....+
T Consensus 41 ~~vav~lSngsv~lyd~~---------------------------------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v 87 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG---------------------------------TGQLLEEFKGPPATTNGVRFISCDSPHGV 87 (376)
T ss_pred eeEEEEecCCeEEEEecc---------------------------------chhhhheecCCCCcccceEEecCCCCCee
Confidence 568888889999999998 6777889999999999999987 45689
Q ss_pred EEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCC-ccEEEEEEc--CCEEEEEe----CCCeEEEEeC-C-CcEEEE
Q 000654 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN-ARVWDCCLT--DSFIITAG----EDCTCRVWGS-D-GKQLKM 342 (1371)
Q Consensus 272 aS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~-~~I~~l~~s--~~~L~Sgs----~Dg~I~VWd~-~-g~~l~~ 342 (1371)
.+|+.||+||+||++..... .+ +...+|. .+..+++.. ++.+++|. .+..+.+||+ . .+++..
T Consensus 88 ~s~ssDG~Vr~wD~Rs~~e~----a~----~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~ 159 (376)
T KOG1188|consen 88 ISCSSDGTVRLWDIRSQAES----AR----ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ 159 (376)
T ss_pred EEeccCCeEEEEEeecchhh----hh----eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh
Confidence 99999999999999986552 11 2344454 455666664 56777775 3667999999 3 343555
Q ss_pred E-eeccCcCEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCc
Q 000654 343 I-KEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE 420 (1371)
Q Consensus 343 l-~~h~~~~V~sl~~spdg-~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~ 420 (1371)
+ ..|.. -|+++.|+|.. ++|+||+-||.|.+||++... .+..+.. .-.+..
T Consensus 160 ~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~--------------EeDaL~~------------viN~~s 212 (376)
T KOG1188|consen 160 LNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN--------------EEDALLH------------VINHGS 212 (376)
T ss_pred hhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCCc--------------chhhHHH------------hhcccc
Confidence 4 45777 49999999965 589999999999999996421 0111111 112345
Q ss_pred cEEEEEEecCC--cEEEEEcCCcEEEEEeecCCCceeEEeEeecC--CccEEEEeecCCCCCCCCCCCCEEEEEeC-CCc
Q 000654 421 YVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKILQVSE--GMPIICMDLLSNEPKYPCGIDDWVALGDG-KGN 495 (1371)
Q Consensus 421 ~V~~lafs~d~--~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~--~~~I~~ld~~~~~~~~s~~~~~lla~gs~-dG~ 495 (1371)
.|.++.|..++ ++++.+..+.+..|.+.+.....|........ .......+..-+ ..++.+..+++++.. .|+
T Consensus 213 SI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~--~~~~~~~~~~~l~g~~~n~ 290 (376)
T KOG1188|consen 213 SIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN--EHSPGDKDTCALAGTDSNK 290 (376)
T ss_pred eeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee--cccCCCcceEEEeccccCc
Confidence 69999999998 88888888888877766554333422211110 001111111000 122345566666554 777
Q ss_pred EEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCC
Q 000654 496 MTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1371)
Q Consensus 496 I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~ 555 (1371)
..++.+..............+. ..+..++.. .++...+..|+||+.||.+++|..++.
T Consensus 291 ~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~-i~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 291 GTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRD-ILFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred eeEEEeeecccccccCcccccc-CCcHHHHHH-HhhhcccceeeccCCCceEEEEecCCc
Confidence 8887765311111111111111 112222221 233455678999999999999997544
No 176
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.56 E-value=1.7e-12 Score=147.44 Aligned_cols=270 Identities=9% Similarity=0.093 Sum_probs=179.9
Q ss_pred cccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 15 ~h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
+|..-|+|+.++ .+ ...+.++.|..+.+|+-.+......+...++ .|...-+- ..... ..|.+.+.++++.
T Consensus 12 r~~e~vc~v~w~--~~----eei~~~~dDh~~~~~~~~~~~s~~~~~~p~d-f~pt~~h~-~~rs~-~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWS--SN----EEIYFVSDDHQIFKWSDVSRDSVEVAKLPDD-FVPTDMHL-GGRSS-GGGKGSDTLLICS 82 (737)
T ss_pred ccceeEEeeccc--cc----ceEEEeccCceEEEeecccchhhhhhhCCcc-cCCccccc-ccccc-CCCCCcceEEEEc
Confidence 467778899888 55 6777888886666665443322222222222 11111110 00011 1222345788888
Q ss_pred CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEe
Q 000654 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1371)
Q Consensus 95 gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~ 174 (1371)
.||.+.|.+-. .+.......|.+.|.+-.|+| +|.-|+++++||.|++|.-. |-....+
T Consensus 83 ~DGkf~il~k~----------------~rVE~sv~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWSrs-GMLRStl- 141 (737)
T KOG1524|consen 83 NDGRFVILNKS----------------ARVERSISAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWSRS-GMLRSTV- 141 (737)
T ss_pred CCceEEEeccc----------------chhhhhhhhhhhhhhhcccCC---CCceeeeecCCceEEEEecc-chHHHHH-
Confidence 89999988743 355567779999999999999 99999999999999999853 3222221
Q ss_pred cCCcceEEEEEeeccCCCCc-EEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe
Q 000654 175 SPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1371)
Q Consensus 175 ~~~~~~v~s~~~~~~s~d~~-~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1371)
......++++++ .|+.. .+++.+ +.+.|=-+. ....+...+
T Consensus 142 ~Q~~~~v~c~~W---~p~S~~vl~c~g--~h~~IKpL~---------------------------------~n~k~i~Wk 183 (737)
T KOG1524|consen 142 VQNEESIRCARW---APNSNSIVFCQG--GHISIKPLA---------------------------------ANSKIIRWR 183 (737)
T ss_pred hhcCceeEEEEE---CCCCCceEEecC--CeEEEeecc---------------------------------cccceeEEe
Confidence 223345788877 34443 444433 444444443 234456778
Q ss_pred cccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEE
Q 000654 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW 333 (1371)
Q Consensus 254 gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VW 333 (1371)
+|.+-|.++.|++....++||++|-..++||-..... +.-..|..+|++++|.+..++.-+.-.++|+
T Consensus 184 AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L-----------f~S~~~ey~ITSva~npd~~~~v~S~nt~R~- 251 (737)
T KOG1524|consen 184 AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL-----------FTSAAEEYAITSVAFNPEKDYLLWSYNTARF- 251 (737)
T ss_pred ccCcEEEEeecCccccceeecCCceeEEeecccCccc-----------ccCChhccceeeeeeccccceeeeeeeeeee-
Confidence 9999999999999999999999999999999776543 3667899999999999654443333334441
Q ss_pred eCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEE
Q 000654 334 GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1371)
Q Consensus 334 d~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~l 374 (1371)
-+...+ .|..++|++||..++.|...|.+.+
T Consensus 252 ---------~~p~~G-SifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 252 ---------SSPRVG-SIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ---------cCCCcc-ceEEEEEcCCCceeeccccCceEEE
Confidence 112334 6999999999999999998887654
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.56 E-value=1e-12 Score=139.58 Aligned_cols=261 Identities=15% Similarity=0.203 Sum_probs=180.9
Q ss_pred CeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-----CCeEEEEEeccCCCCCCCCCCccceeeeeeeec
Q 000654 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (1371)
Q Consensus 54 g~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-----d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l 128 (1371)
++.+.++.. ...++++.|+.. |+.+ ..+|+++ .+.|.|..+.... .+ ......
T Consensus 35 ~~eiy~Y~a--p~~lya~~Ws~~-----~~~~---~rla~gS~~Ee~~Nkvqiv~ld~~s---~e--------~~~~a~- 92 (364)
T KOG0290|consen 35 RKEIYTYNA--PWPLYAMNWSVR-----PDKK---FRLAVGSFIEEYNNKVQIVQLDEDS---GE--------LVEDAN- 92 (364)
T ss_pred cceEEEecC--CCceeeeccccC-----CCcc---eeEEEeeeccccCCeeEEEEEccCC---Cc--------eeccCC-
Confidence 344555553 346899999843 5543 6777766 4788888887433 00 111222
Q ss_pred cCCCCcEEEEEEEeecCCC---cEEEEEECCCcEEEEECCC--CeEE--EEE----ecCCcceEEEEEeeccCCCCcEEE
Q 000654 129 PRLSHWVFDVCFLKVCNGN---RSLAIGCSDNSIRVWDISN--SSII--LEV----HSPERCLLYSMKLWGDNLEALRIA 197 (1371)
Q Consensus 129 ~gh~~~I~~v~fsp~~~dg---~~Latgs~Dg~I~vWd~~~--~~~~--~~l----~~~~~~~v~s~~~~~~s~d~~~La 197 (1371)
..|.-+++.+.|.|. +.| ++|||.+ ..+|+|.+.. .+.. ..+ .......+.+..+ ...+..++.
T Consensus 93 fd~~YP~tK~~wiPd-~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~~ig 167 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPD-SKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPNLIG 167 (364)
T ss_pred CCCCCCccceEecCC-ccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcceeE
Confidence 357789999999992 111 3566654 4799999973 2221 111 1222334445443 345678999
Q ss_pred EEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC-CEEEEEeC
Q 000654 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSD 276 (1371)
Q Consensus 198 sgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg-~~LaS~s~ 276 (1371)
+.+.|-+..|||++.+. .+.....+.+|...|+.|+|..++ +.+||++.
T Consensus 168 tSSiDTTCTiWdie~~~------------------------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga 217 (364)
T KOG0290|consen 168 TSSIDTTCTIWDIETGV------------------------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA 217 (364)
T ss_pred eecccCeEEEEEEeecc------------------------------ccceeeEEEecCcceeEEEeccCccceEEEecC
Confidence 99999999999999220 223345677999999999999865 57899999
Q ss_pred CCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCC-eEEEEeC--CCcEEEEEeeccCcC
Q 000654 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDC-TCRVWGS--DGKQLKMIKEHIGRG 350 (1371)
Q Consensus 277 Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg-~I~VWd~--~g~~l~~l~~h~~~~ 350 (1371)
||+||++|++.... ...+ ..-.....+...++|+ ++++||-..|. .|.|-|+ ...++..+++|.+ .
T Consensus 218 DGSvRmFDLR~leH-----STII--YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-~ 289 (364)
T KOG0290|consen 218 DGSVRMFDLRSLEH-----STII--YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-S 289 (364)
T ss_pred CCcEEEEEeccccc-----ceEE--ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-c
Confidence 99999999998654 1111 0111114567778887 58899887664 5889998 6889999999999 6
Q ss_pred EEEEEEcCCC-CEEEEEECCCcEEEEEcCC
Q 000654 351 IWRCLYDSLS-SLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 351 V~sl~~spdg-~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
|.+++|.|.. ..|+|+|+|..+.+||+..
T Consensus 290 VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 290 VNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ccceEecCCCCceeeecCCcceEEEEeccc
Confidence 9999999965 4899999999999999953
No 178
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=6.2e-14 Score=147.00 Aligned_cols=296 Identities=12% Similarity=0.140 Sum_probs=189.2
Q ss_pred cccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEE
Q 000654 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1371)
Q Consensus 15 ~h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~ 93 (1371)
.|.+.|+++.|- .+ .+|.+|. .|.|++|++.+...+..++.+....|..+... |.+ .+..-
T Consensus 12 p~~~~v~s~~fq--a~-----~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~-------p~d----~l~tq 73 (323)
T KOG0322|consen 12 PHSSSVTSVLFQ--AN-----ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSI-------PND----SLDTQ 73 (323)
T ss_pred cccchheehhhc--cc-----hhhhcccccceEEEEEeecCccchhhhhhccceeeceeec-------CCc----chhhc
Confidence 366789999997 55 4577777 59999999999888888887777789998877 654 44444
Q ss_pred ECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeec--CCC----cEEEEEEC--CCcEEEEECC
Q 000654 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC--NGN----RSLAIGCS--DNSIRVWDIS 165 (1371)
Q Consensus 94 ~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~--~dg----~~Latgs~--Dg~I~vWd~~ 165 (1371)
.-|..+.+|++.... +..+ |.=.++++-|.+++ ..+ ..++.-+. |- +.+-|..
T Consensus 74 gRd~~L~lw~ia~s~-------------~i~i-----~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g 134 (323)
T KOG0322|consen 74 GRDPLLILWTIAYSA-------------FISI-----HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGG 134 (323)
T ss_pred CCCceEEEEEccCcc-------------eEEE-----eeeeccccccccceeccCCCcchhheecCCcccch-hhhhccC
Confidence 559999999998532 1122 22223344443311 000 11111110 10 1111221
Q ss_pred CCeEEEEEecC---CcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccc
Q 000654 166 NSSIILEVHSP---ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1371)
Q Consensus 166 ~~~~~~~l~~~---~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~ 242 (1371)
....+.....+ ....+.+...-.......++++|-.+|.+.+||+..+... .+.
T Consensus 135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-----------------------~~~ 191 (323)
T KOG0322|consen 135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-----------------------IQL 191 (323)
T ss_pred ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee-----------------------ecc
Confidence 11111111111 1112223221111122346788999999999999843111 111
Q ss_pred ccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEE--cCCE
Q 000654 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL--TDSF 320 (1371)
Q Consensus 243 ~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~--s~~~ 320 (1371)
....+.+.....|.++|.++.|.+....=++++.+..+..|.+...... .+ +. ....-..-.|..+.. .++.
T Consensus 192 ~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs----lq-~~-~e~~lknpGv~gvrIRpD~KI 265 (323)
T KOG0322|consen 192 PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS----LQ-IR-KEITLKNPGVSGVRIRPDGKI 265 (323)
T ss_pred ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc----cc-cc-ceEEecCCCccceEEccCCcE
Confidence 1233455666789999999999987777788898889999998764221 11 11 011112223444444 4789
Q ss_pred EEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 321 L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
+||++-|+.||||+. +.+++..++.|.+ +|.+++|+|+..++|.++.|++|.+|++
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999 8999999999998 7999999999999999999999999986
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.53 E-value=2e-14 Score=170.01 Aligned_cols=269 Identities=16% Similarity=0.219 Sum_probs=201.3
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEeC-CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~d-g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|...|+|+.|. .. ++++++|+| ..++||..+++.+++...+|++ .|..++.+ ... .++++.
T Consensus 189 H~naVyca~fD--rt----g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~-ditdlavs-------~~n----~~iaaa 250 (1113)
T KOG0644|consen 189 HRNAVYCAIFD--RT----GRYIITGSDDRLVKIWSMETARCLASCRGHSG-DITDLAVS-------SNN----TMIAAA 250 (1113)
T ss_pred hhhheeeeeec--cc----cceEeecCccceeeeeeccchhhhccCCCCcc-ccchhccc-------hhh----hhhhhc
Confidence 66779999999 65 899999995 9999999999999999999988 89999988 443 566666
Q ss_pred C-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEE-
Q 000654 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE- 172 (1371)
Q Consensus 95 g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~- 172 (1371)
+ |..|++|.+.. ..++..+.||++.|++++|+| .++.+.||++++||..-.-.+..
T Consensus 251 S~D~vIrvWrl~~---------------~~pvsvLrghtgavtaiafsP-------~~sss~dgt~~~wd~r~~~~~y~p 308 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPD---------------GAPVSVLRGHTGAVTAIAFSP-------RASSSDDGTCRIWDARLEPRIYVP 308 (1113)
T ss_pred ccCceEEEEecCC---------------CchHHHHhccccceeeeccCc-------cccCCCCCceEeccccccccccCC
Confidence 5 89999999986 567888999999999999999 45788999999999871111111
Q ss_pred --EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEE
Q 000654 173 --VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1371)
Q Consensus 173 --l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~ 250 (1371)
+....+..+.++.+ ...+..+++|+.|++-..|....
T Consensus 309 rp~~~~~~~~~~s~~~---~~~~~~f~Tgs~d~ea~n~e~~~-------------------------------------- 347 (1113)
T KOG0644|consen 309 RPLKFTEKDLVDSILF---ENNGDRFLTGSRDGEARNHEFEQ-------------------------------------- 347 (1113)
T ss_pred CCCCcccccceeeeec---cccccccccccCCcccccchhhH--------------------------------------
Confidence 11222334444444 44567788999888888887650
Q ss_pred EEecccCCEEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeC
Q 000654 251 RLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGE 326 (1371)
Q Consensus 251 ~l~gH~~~I~~v~~spd-g~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~ 326 (1371)
+..|...+.-+.++.+ ..+.+++-.+..+.+|++.++.. . ..+.+|...+..+.++ +....+++.
T Consensus 348 -l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l-----~-----H~l~ghsd~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 348 -LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL-----L-----HNLMGHSDEVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred -hhhhccceEEEeccccccccceeeeeeeEeeeeecccchh-----h-----hhhcccccceeeeeecCCCcHhhhhccC
Confidence 0111111111222212 24566777778899999999865 2 3778999999999998 467789999
Q ss_pred CCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 327 Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
||...|||+ .|.+++.+...++ .+...+|++||..++....-|.+.|...
T Consensus 417 dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 417 DGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred CCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEecc
Confidence 999999999 8887776443334 3778899999999998888899988876
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.53 E-value=5.4e-13 Score=141.68 Aligned_cols=247 Identities=17% Similarity=0.241 Sum_probs=170.9
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCC--CeEE--EEE----EeecCccEEEEEeeccccccCCCCcce
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA--GTLI--RPF----QVFHGIRLHGISCNFINCTEGSVSTRV 87 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~s--g~~l--~~~----~~~~~~~I~~i~~s~~~~~~~pdg~~~ 87 (1371)
|.+|++.+.|. |+..+...-|++.++..+|+|.+.. .+.. ..+ +.+...++++..|... |.
T Consensus 95 ~~YP~tK~~wi--Pd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~------dp--- 163 (364)
T KOG0290|consen 95 HPYPVTKLMWI--PDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV------DP--- 163 (364)
T ss_pred CCCCccceEec--CCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC------Cc---
Confidence 88999999999 9833334456666777999999863 2221 111 1122347888877722 22
Q ss_pred eeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCC
Q 000654 88 TFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1371)
Q Consensus 88 ~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~ 166 (1371)
.+|.+++ |-+..|||++.+. .+.....|-.|...|.+++|.. ...+.+|+.+.||+||++|++.
T Consensus 164 -~~igtSSiDTTCTiWdie~~~------------~~~vkTQLIAHDKEV~DIaf~~--~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 164 -NLIGTSSIDTTCTIWDIETGV------------SGTVKTQLIAHDKEVYDIAFLK--GSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred -ceeEeecccCeEEEEEEeecc------------ccceeeEEEecCcceeEEEecc--CccceEEEecCCCcEEEEEecc
Confidence 5666666 9999999998742 1344556678999999999997 2346889999999999999976
Q ss_pred CeEE-EEEecCC-cceEEEEEeeccCCCCcEEEEEe-CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccc
Q 000654 167 SSII-LEVHSPE-RCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1371)
Q Consensus 167 ~~~~-~~l~~~~-~~~v~s~~~~~~s~d~~~Lasgs-~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~ 243 (1371)
...- ..++.+. ...+ +++.+...|-+++|+-. ....|.|-|++
T Consensus 229 leHSTIIYE~p~~~~pL--lRLswnkqDpnymATf~~dS~~V~iLDiR-------------------------------- 274 (364)
T KOG0290|consen 229 LEHSTIIYEDPSPSTPL--LRLSWNKQDPNYMATFAMDSNKVVILDIR-------------------------------- 274 (364)
T ss_pred cccceEEecCCCCCCcc--eeeccCcCCchHHhhhhcCCceEEEEEec--------------------------------
Confidence 5432 2223333 2223 23333445667777744 44678899988
Q ss_pred cceeeEEEEecccCCEEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CC
Q 000654 244 HTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DS 319 (1371)
Q Consensus 244 ~~~~~~~~l~gH~~~I~~v~~spd-g~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~ 319 (1371)
....++.++.+|.+.|.+|+|.|. ...|+|+++|..+.+||+....... ...|...+.-+++|..+.|+ +.
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~-----~~dPilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN-----GEDPILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC-----CCCchhhhhccceeeeeeecccCCC
Confidence 246678899999999999999995 5689999999999999998753310 01112334467789999998 67
Q ss_pred EEEEEeCC
Q 000654 320 FIITAGED 327 (1371)
Q Consensus 320 ~L~Sgs~D 327 (1371)
+++.+...
T Consensus 350 wiai~~~k 357 (364)
T KOG0290|consen 350 WIAICFGK 357 (364)
T ss_pred EEEEEecC
Confidence 88877643
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.51 E-value=1.4e-12 Score=143.77 Aligned_cols=250 Identities=18% Similarity=0.282 Sum_probs=173.4
Q ss_pred EeecCccEEEEEeeccccccCCCCcceeeEEEE----ECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEE
Q 000654 61 QVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL----FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1371)
Q Consensus 61 ~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~----~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~ 136 (1371)
++.++.+|.-+.|....|.-+|- ++|+ +|+|...+.-+.... .+ -...-...||+++|+
T Consensus 23 ~CYddIrVs~~tWDS~fcavNPk------fiAvi~easgGgaf~ViPl~k~G----------r~-d~~~P~v~GHt~~vL 85 (472)
T KOG0303|consen 23 QCYDDIRVSRVTWDSSFCAVNPK------FVAVIIEASGGGAFLVIPLVKTG----------RM-DASYPLVCGHTAPVL 85 (472)
T ss_pred hhhcceeeeeeeccccccccCCc------eEEEEEecCCCcceeeccccccc----------cc-CCCCCCccCcccccc
Confidence 44556678888887666665553 4443 235566666554311 00 112234679999999
Q ss_pred EEEEEeecCCCcEEEEEECCCcEEEEECCCCeE-------EEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEE
Q 000654 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-------ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (1371)
Q Consensus 137 ~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~-------~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd 209 (1371)
+++|+|+ +...||+|+.|.+|.||.+..+.. +..+.+|.+. +..+.+++. ..+.|++++.|+.|.+|+
T Consensus 86 Di~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rr-Vg~V~wHPt--A~NVLlsag~Dn~v~iWn 160 (472)
T KOG0303|consen 86 DIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRR-VGLVQWHPT--APNVLLSAGSDNTVSIWN 160 (472)
T ss_pred ccccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeeccee-EEEEeeccc--chhhHhhccCCceEEEEe
Confidence 9999995 667899999999999999966533 4455555543 445566543 356889999999999999
Q ss_pred cccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000654 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1371)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~ 289 (1371)
+. ++..+..+. |.+.|.++.|+.||.+|+|++.|..|||||.+.++
T Consensus 161 v~---------------------------------tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 161 VG---------------------------------TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred cc---------------------------------CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc
Confidence 98 555565665 99999999999999999999999999999999986
Q ss_pred ccCCCCceeeeceEeecCCcc-EEEEEEc--CCEEEEEe----CCCeEEEEeC-C-CcEE--EEEeeccCcCEEEEEEcC
Q 000654 290 WKDSDSIEEVGSSVLYGHNAR-VWDCCLT--DSFIITAG----EDCTCRVWGS-D-GKQL--KMIKEHIGRGIWRCLYDS 358 (1371)
Q Consensus 290 ~~~~~~~~~~~~~~~~gh~~~-I~~l~~s--~~~L~Sgs----~Dg~I~VWd~-~-g~~l--~~l~~h~~~~V~sl~~sp 358 (1371)
. +. ...+|.+. -..+.|- +. ++|.+ .+..+.+||. + .+++ ..+.... +|.---|.+
T Consensus 207 ~-----v~-----e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~ 273 (472)
T KOG0303|consen 207 V-----VS-----EGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDP 273 (472)
T ss_pred E-----ee-----ecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecC
Confidence 6 22 33566542 2233343 44 55544 4678999998 2 2333 3343333 476666789
Q ss_pred CCCEEEEEE-CCCcEEEEEcCC
Q 000654 359 LSSLLVTAG-FDSAIKVHQFQA 379 (1371)
Q Consensus 359 dg~~L~Tgg-~Dg~I~lwdl~~ 379 (1371)
|.+.+..+| .|+.||-|.++.
T Consensus 274 dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 274 DTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred CCCEEEEEecCCcceEEEEecC
Confidence 988776655 599999999954
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.49 E-value=4.7e-12 Score=140.55 Aligned_cols=264 Identities=16% Similarity=0.213 Sum_probs=177.4
Q ss_pred EEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEE
Q 000654 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1371)
Q Consensus 60 ~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v 138 (1371)
+.-|...+|..+.|. +.+. .+++++| |..|+||.+......+. ....+.+..|..|...|+++
T Consensus 8 i~wH~~~pv~s~dfq-------~n~~---~~laT~G~D~~iriW~v~r~~~~~~------~~~V~y~s~Ls~H~~aVN~v 71 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQ-------KNSL---NKLATAGGDKDIRIWKVNRSEPGGG------DMKVEYLSSLSRHTRAVNVV 71 (434)
T ss_pred EEecCCCceEEEEec-------cCcc---cceecccCccceeeeeeeecCCCCC------ceeEEEeecccCCcceeEEE
Confidence 344555689999998 5441 3677665 89999999986431111 12467888999999999999
Q ss_pred EEEeecCCCcEEEEEECCCcEEEEECC--------C-----C--eEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCC
Q 000654 139 CFLKVCNGNRSLAIGCSDNSIRVWDIS--------N-----S--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1371)
Q Consensus 139 ~fsp~~~dg~~Latgs~Dg~I~vWd~~--------~-----~--~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg 203 (1371)
.|+| +|++||+|+.+|.|.+|... + . ..+.+.-..++.-+|.+++ ++++.++++|+.|+
T Consensus 72 Rf~p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W---s~d~~~l~s~s~dn 145 (434)
T KOG1009|consen 72 RFSP---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW---SPDSNFLVSGSVDN 145 (434)
T ss_pred EEcC---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc---cCCCceeeeeeccc
Confidence 9999 99999999999999999875 2 1 1122222334455677766 88999999999999
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 000654 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1371)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriW 283 (1371)
.+++||+. .+.....+.+|...++.++|.|-++++++-+.|+..+.+
T Consensus 146 s~~l~Dv~---------------------------------~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~ 192 (434)
T KOG1009|consen 146 SVRLWDVH---------------------------------AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGF 192 (434)
T ss_pred eEEEEEec---------------------------------cceeEeeccccccccceeecchhhhhhhhhccCccccee
Confidence 99999998 556666666777777777777777777776666655554
Q ss_pred EccCCccc-----------------------------------------------CCCC--------------------c
Q 000654 284 EVRAEYWK-----------------------------------------------DSDS--------------------I 296 (1371)
Q Consensus 284 dl~~~~~~-----------------------------------------------~~~~--------------------~ 296 (1371)
.+...+.. .... .
T Consensus 193 ~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~ 272 (434)
T KOG1009|consen 193 SAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK 272 (434)
T ss_pred eeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence 44321100 0000 0
Q ss_pred eeeeceEeecCCccEEEEEEcC--------------------CEEEEEeCCCeEEEEeC-CCcEEEEEe-eccCcCEEEE
Q 000654 297 EEVGSSVLYGHNARVWDCCLTD--------------------SFIITAGEDCTCRVWGS-DGKQLKMIK-EHIGRGIWRC 354 (1371)
Q Consensus 297 ~~~~~~~~~gh~~~I~~l~~s~--------------------~~L~Sgs~Dg~I~VWd~-~g~~l~~l~-~h~~~~V~sl 354 (1371)
++. ..+.+.......+.|++ -.++.|+.+ .+.|||. .-.++.... -|-. +|+.+
T Consensus 273 rP~--~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~-~iTDi 348 (434)
T KOG1009|consen 273 RPA--ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYS-AITDI 348 (434)
T ss_pred Cce--eecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeee-eecce
Confidence 000 12222233333333331 134555544 6889998 555665543 4555 79999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCCc
Q 000654 355 LYDSLSSLLVTAGFDSAIKVHQFQAFLP 382 (1371)
Q Consensus 355 ~~spdg~~L~Tgg~Dg~I~lwdl~~~~~ 382 (1371)
+|++||..|+..+.||...+-.++...+
T Consensus 349 aws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 349 AWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eecCCCcEEEEeccCCceEEEEEcchhc
Confidence 9999999999999999988887765433
No 183
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.49 E-value=2.8e-11 Score=137.64 Aligned_cols=263 Identities=16% Similarity=0.176 Sum_probs=175.2
Q ss_pred CCCCcEEEEEEEeecCCCcEEEEEECCCcEEEE-ECCCCeEEEEEecCCcceEEEEEeeccC----CCCcEEEEEeCCCe
Q 000654 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW-DISNSSIILEVHSPERCLLYSMKLWGDN----LEALRIASGTIYNE 204 (1371)
Q Consensus 130 gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vW-d~~~~~~~~~l~~~~~~~v~s~~~~~~s----~d~~~Lasgs~dg~ 204 (1371)
.|...+.++.|.. +...+.+++ |..+.+| |+.+. ....+..+..-...++...+.+ .....++.++.||.
T Consensus 12 r~~e~vc~v~w~~---~eei~~~~d-Dh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS---NEEIYFVSD-DHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccc---cceEEEecc-CceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCce
Confidence 4666777888886 666565555 5555555 54332 2222222222222222111111 12356788888998
Q ss_pred EEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000654 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1371)
Q Consensus 205 I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWd 284 (1371)
+.+-+-. ++....+.+|.+.|.+-.|+|||.-|+|+++||.|++|.
T Consensus 87 f~il~k~----------------------------------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS 132 (737)
T KOG1524|consen 87 FVILNKS----------------------------------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS 132 (737)
T ss_pred EEEeccc----------------------------------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe
Confidence 8887654 344456778999999999999999999999999999998
Q ss_pred ccCCcccCCCCceeeeceEeecCCccEEEEEEcC---CEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCC
Q 000654 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1371)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~---~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg 360 (1371)
-...-. .++......|+|++|.+ +.+++.+ +.+.|=.+ ....+-..+.|.+ -|.++.|++..
T Consensus 133 rsGMLR-----------Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s 198 (737)
T KOG1524|consen 133 RSGMLR-----------STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQS 198 (737)
T ss_pred ccchHH-----------HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCc-EEEEeecCccc
Confidence 654322 25556678899999973 5566655 44555455 3344556788999 69999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCCcccccCCC---ccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEE-E
Q 000654 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHP---EAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-A 436 (1371)
Q Consensus 361 ~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~---~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv-~ 436 (1371)
+++++||.|-..++||-.|+.+-+...|. .++.|+++ +.|.+.+-+. .+.-....+.|-.++|++||..++ +
T Consensus 199 ~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt---~R~~~p~~GSifnlsWS~DGTQ~a~g 274 (737)
T KOG1524|consen 199 NIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNT---ARFSSPRVGSIFNLSWSADGTQATCG 274 (737)
T ss_pred cceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeee---eeecCCCccceEEEEEcCCCceeecc
Confidence 99999999999999999887665544433 24566666 4444432221 223334567899999999997555 5
Q ss_pred EcCCcEEEEEeec
Q 000654 437 TNHGYLYHTKLCD 449 (1371)
Q Consensus 437 t~~G~i~~~~l~~ 449 (1371)
++.|.+....+-+
T Consensus 275 t~~G~v~~A~~ie 287 (737)
T KOG1524|consen 275 TSTGQLIVAYAIE 287 (737)
T ss_pred ccCceEEEeeeeh
Confidence 6788887665543
No 184
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.3e-13 Score=170.26 Aligned_cols=244 Identities=16% Similarity=0.246 Sum_probs=182.9
Q ss_pred CcEEEEEEEecCCCCCCC--CEEEEEe-CCcEEEEECCC---C---eEEEEEEeecCccEEEEEeeccccccCCCCccee
Q 000654 18 GEISALCFVHLPSHLSSL--PFLLAGS-GSQVLLYDLEA---G---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (1371)
Q Consensus 18 ~~Vtavafs~~pd~~~~~--~llaaG~-dg~I~Iwd~~s---g---~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~ 88 (1371)
...+.++|. +. +.+ .++|.|. ||.|.+||... + ..+.+...|++ .|.++.|+ +.+.
T Consensus 65 ~rF~kL~W~--~~--g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G-~V~gLDfN-------~~q~--- 129 (1049)
T KOG0307|consen 65 NRFNKLAWG--SY--GSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG-PVLGLDFN-------PFQG--- 129 (1049)
T ss_pred ccceeeeec--cc--CCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCC-ceeeeecc-------ccCC---
Confidence 346888888 54 222 2566666 79999999865 2 34677788888 89999999 6652
Q ss_pred eEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC
Q 000654 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1371)
Q Consensus 89 ~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~ 167 (1371)
.++|+++ +|.|.|||+.... ..+.+. -..-.+.|.+++|+. ...+.|++++.+|.+.|||++..
T Consensus 130 nlLASGa~~geI~iWDlnn~~---tP~~~~----------~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPE---TPFTPG----------SQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcC---CCCCCC----------CCCCcccceEeccch--hhhHHhhccCCCCCceeccccCC
Confidence 5777776 7999999998633 121110 112457899999986 35678999999999999999988
Q ss_pred eEEEEEecCCc-ceEEEEEeeccCCCCcEEEEEeCC---CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccc
Q 000654 168 SIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1371)
Q Consensus 168 ~~~~~l~~~~~-~~v~s~~~~~~s~d~~~Lasgs~d---g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~ 243 (1371)
+.+..+..+.+ +.+..+.|+++. ...|++++.| -.|.+||++
T Consensus 195 ~pii~ls~~~~~~~~S~l~WhP~~--aTql~~As~dd~~PviqlWDlR-------------------------------- 240 (1049)
T KOG0307|consen 195 KPIIKLSDTPGRMHCSVLAWHPDH--ATQLLVASGDDSAPVIQLWDLR-------------------------------- 240 (1049)
T ss_pred CcccccccCCCccceeeeeeCCCC--ceeeeeecCCCCCceeEeeccc--------------------------------
Confidence 88777765554 445667775442 3444444433 358899988
Q ss_pred cceeeEEEEecccCCEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CC
Q 000654 244 HTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DS 319 (1371)
Q Consensus 244 ~~~~~~~~l~gH~~~I~~v~~spdg-~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~ 319 (1371)
....+++.+.+|...|.++.|++.+ .+|+|++.|+.|.+|+..+++. +. .+.....++..+.|. +.
T Consensus 241 ~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv-----l~-----~~p~~~nW~fdv~w~pr~P~ 310 (1049)
T KOG0307|consen 241 FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV-----LG-----ELPAQGNWCFDVQWCPRNPS 310 (1049)
T ss_pred ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE-----ee-----ecCCCCcceeeeeecCCCcc
Confidence 2455677788999999999999855 8999999999999999999765 22 444567889999998 57
Q ss_pred EEEEEeCCCeEEEEeC
Q 000654 320 FIITAGEDCTCRVWGS 335 (1371)
Q Consensus 320 ~L~Sgs~Dg~I~VWd~ 335 (1371)
.++.++.||.|-|+.+
T Consensus 311 ~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 311 VMAAASFDGKISIYSL 326 (1049)
T ss_pred hhhhheeccceeeeee
Confidence 9999999999999998
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=4.9e-13 Score=153.77 Aligned_cols=226 Identities=20% Similarity=0.303 Sum_probs=167.5
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCC--------CeEEEEEecCCcceEEEEEeeccCCCC
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN--------SSIILEVHSPERCLLYSMKLWGDNLEA 193 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~--------~~~~~~l~~~~~~~v~s~~~~~~s~d~ 193 (1371)
+.+..++..|.+-|++++|.| ....|++++.|+++.+|+++. -+.+.++..|.+. +.++.+ +.++
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~---sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gP-Vl~v~v---~~n~ 356 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHP---SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGP-VLCVVV---PSNG 356 (577)
T ss_pred cceeeeeecchhhhhhhhcCC---CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCc-eEEEEe---cCCc
Confidence 444458888999999999999 788899999999999999932 1345667776664 445555 6789
Q ss_pred cEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEE
Q 000654 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1371)
Q Consensus 194 ~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS 273 (1371)
..+++|+.||.|+.|++. ....+- +.-........+.||++.|+.+++++...+|++
T Consensus 357 ~~~ysgg~Dg~I~~w~~p-~n~dp~----------------------ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls 413 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLP-PNQDPD----------------------DSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS 413 (577)
T ss_pred eEEEeeccCceeeeeccC-CCCCcc----------------------cccCcchhccceeccccceeeeeecccccceee
Confidence 999999999999999876 111000 000022344568899999999999999999999
Q ss_pred EeCCCcEEEEEccCCccc-----------------CC----------------------CCceeeeceEeec--CCccEE
Q 000654 274 VSDDRSARIWEVRAEYWK-----------------DS----------------------DSIEEVGSSVLYG--HNARVW 312 (1371)
Q Consensus 274 ~s~Dg~VriWdl~~~~~~-----------------~~----------------------~~~~~~~~~~~~g--h~~~I~ 312 (1371)
||.||++|+|+....... .. ..+..+......+ -...+.
T Consensus 414 cs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred ecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence 999999999998754330 00 0000000000000 012234
Q ss_pred EEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 313 DCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 313 ~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
-+.++ ..+.+++.+|+.|+++|. +++++.....|.. .++++++.|+|.+|++++.|+.+++|.+.
T Consensus 494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred eEEecCCCCeeEecccCCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhcc
Confidence 44444 468999999999999999 8999999999988 79999999999999999999999999984
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.8e-12 Score=140.29 Aligned_cols=208 Identities=14% Similarity=0.236 Sum_probs=155.9
Q ss_pred eeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCC------CeEEEEEecCCcceEEEEEeeccCCCCcEEE
Q 000654 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN------SSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1371)
Q Consensus 124 ~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~------~~~~~~l~~~~~~~v~s~~~~~~s~d~~~La 197 (1371)
+.+.+.+|.+-|+++.|+. ++++||+|+.|..+++|++.. .+.+.....|++..++++.| .....+|+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F---~~~N~~~~ 121 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF---DLENRFLY 121 (609)
T ss_pred hhhhhhhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE---ccCCeeEe
Confidence 3455779999999999998 899999999999999999853 45566666788889999988 66678999
Q ss_pred EEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe--cccCCEEEEEEcCCCCEEEEEe
Q 000654 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVS 275 (1371)
Q Consensus 198 sgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~--gH~~~I~~v~~spdg~~LaS~s 275 (1371)
+|+.+++|...|++ +.+.+..+. ...+.|+.+..+|-.+.|++.+
T Consensus 122 SG~~~~~VI~HDiE---------------------------------t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t 168 (609)
T KOG4227|consen 122 SGERWGTVIKHDIE---------------------------------TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT 168 (609)
T ss_pred cCCCcceeEeeecc---------------------------------cceeeeeecccCcccceeecccCCCCceEEEEe
Confidence 99999999999998 333343332 2335899999999999999999
Q ss_pred CCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeCC--CcEEEEEeecc---
Q 000654 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD--GKQLKMIKEHI--- 347 (1371)
Q Consensus 276 ~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~~--g~~l~~l~~h~--- 347 (1371)
+++.|.+||.+..... ..++ .+........++-|+ |.+|+++++.+-+-+||.. ..++....+..
T Consensus 169 ~~~~V~~~D~Rd~~~~----~~~~---~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~ 241 (609)
T KOG4227|consen 169 RAKLVSFIDNRDRQNP----ISLV---LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLP 241 (609)
T ss_pred cCceEEEEeccCCCCC----Ccee---eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCc
Confidence 9999999999886531 2222 333445567788887 6899999999999999983 23332221111
Q ss_pred C--cCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 348 G--RGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 348 ~--~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
. ..-.++.|+|+|..|++--.-..-.+||+
T Consensus 242 ~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 242 QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred ccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 1 01246779999998887665555566666
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.6e-11 Score=127.40 Aligned_cols=284 Identities=17% Similarity=0.178 Sum_probs=190.6
Q ss_pred EEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC---------Ce-EEEEEEeecCccEEEEEeeccccccCCCCccee
Q 000654 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA---------GT-LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (1371)
Q Consensus 20 Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~s---------g~-~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~ 88 (1371)
|.+-+++ |. +++|++|. .|.|.++.+++ |+ .+..++.|++ +|..++|. +
T Consensus 13 vf~qa~s--p~----~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg-piy~~~f~-------------d 72 (325)
T KOG0649|consen 13 VFAQAIS--PS----KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG-PIYYLAFH-------------D 72 (325)
T ss_pred HHHHhhC--Cc----ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC-Ceeeeeee-------------h
Confidence 5556777 76 89999999 69999999853 22 3455577776 89999998 2
Q ss_pred eEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCC-----CcEEEEEEEeecCCCcEEEEEECCCcEEEEE
Q 000654 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-----HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1371)
Q Consensus 89 ~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~-----~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd 163 (1371)
.+|+++|||.|+=|....... .....+ .++ ...+.|. -.|+++-..| ..+-+.+++.|+.+.-||
T Consensus 73 ~~Lls~gdG~V~gw~W~E~~e-s~~~K~----lwe--~~~P~~~~~~evPeINam~ldP---~enSi~~AgGD~~~y~~d 142 (325)
T KOG0649|consen 73 DFLLSGGDGLVYGWEWNEEEE-SLATKR----LWE--VKIPMQVDAVEVPEINAMWLDP---SENSILFAGGDGVIYQVD 142 (325)
T ss_pred hheeeccCceEEEeeehhhhh-hccchh----hhh--hcCccccCcccCCccceeEecc---CCCcEEEecCCeEEEEEE
Confidence 588899999999999875320 000000 011 1111222 3588898888 656666777899999999
Q ss_pred CCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccc
Q 000654 164 ISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1371)
Q Consensus 164 ~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~ 243 (1371)
+++|+....+++|... +.++.. -.....+++|+.||++++||.++.+..... ..++
T Consensus 143 lE~G~i~r~~rGHtDY-vH~vv~---R~~~~qilsG~EDGtvRvWd~kt~k~v~~i------------------e~yk-- 198 (325)
T KOG0649|consen 143 LEDGRIQREYRGHTDY-VHSVVG---RNANGQILSGAEDGTVRVWDTKTQKHVSMI------------------EPYK-- 198 (325)
T ss_pred ecCCEEEEEEcCCcce-eeeeee---cccCcceeecCCCccEEEEeccccceeEEe------------------cccc--
Confidence 9999999999988653 334332 123457999999999999999943321100 0000
Q ss_pred cceeeEEEEecc-cCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEE
Q 000654 244 HTAVNLFRLVGH-EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFII 322 (1371)
Q Consensus 244 ~~~~~~~~l~gH-~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~ 322 (1371)
.-..+..| ..+|.+++.+ ..+|++|+. ..+.+|.++..+. .....-.+++..+.|.++.++
T Consensus 199 ----~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~-----------t~vfpipa~v~~v~F~~d~vl 260 (325)
T KOG0649|consen 199 ----NPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSES-----------TCVFPIPARVHLVDFVDDCVL 260 (325)
T ss_pred ----ChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCc-----------eEEEecccceeEeeeecceEE
Confidence 00111222 3467777764 457776554 4789999998766 255566778899999999999
Q ss_pred EEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCC-CEEEEEECCCcEEEEE
Q 000654 323 TAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQ 376 (1371)
Q Consensus 323 Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg-~~L~Tgg~Dg~I~lwd 376 (1371)
++++...+.-|.+.|..-........ ..++..++..- ++|-.+|....+.++.
T Consensus 261 ~~G~g~~v~~~~l~Gvl~a~ip~~s~-~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 261 IGGEGNHVQSYTLNGVLQANIPVEST-ACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred EeccccceeeeeeccEEEEeccCCcc-ceeeecccCCceEEEEecccceeeeeee
Confidence 99999999999998876665554433 35666664332 3555566666776653
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.47 E-value=1.2e-12 Score=144.26 Aligned_cols=123 Identities=25% Similarity=0.451 Sum_probs=106.6
Q ss_pred EEecccCCEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeC
Q 000654 251 RLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGE 326 (1371)
Q Consensus 251 ~l~gH~~~I~~v~~sp-dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~ 326 (1371)
.+.||+++|..++|+| +...+||||+|.+|.||++...... ....+++ ..+.||..+|--++|+ .+.|+|++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~-~~ltepv--v~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT-RDLTEPV--VELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc-cCcccce--EEEeecceeEEEEeecccchhhHhhccC
Confidence 3569999999999999 5567999999999999999876542 1112333 3889999999999999 489999999
Q ss_pred CCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 327 Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
|.+|.+||+ +|+.+.++. |.. -|+++.|+.||.+|+|++.|..|||||..
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr 203 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPR 203 (472)
T ss_pred CceEEEEeccCCceeeecC-CCC-eEEEEEeccCCceeeeecccceeEEEcCC
Confidence 999999999 888888887 877 59999999999999999999999999994
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=4.1e-12 Score=138.98 Aligned_cols=290 Identities=13% Similarity=0.142 Sum_probs=201.3
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC------CeEEEEEEeecCccEEEEEeeccccccCCCCccee
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA------GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~s------g~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~ 88 (1371)
|.|-|.|+.|+ .+ +++|++|. |..+++|+++. .+.|.....++...|++++|. ...
T Consensus 55 H~GCiNAlqFS--~N----~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~-------~~N---- 117 (609)
T KOG4227|consen 55 HTGCINALQFS--HN----DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD-------LEN---- 117 (609)
T ss_pred hccccceeeec--cC----CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc-------cCC----
Confidence 78889999999 66 79999998 59999999853 355555555555689999998 443
Q ss_pred eEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC
Q 000654 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1371)
Q Consensus 89 ~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~ 167 (1371)
+++.+++ +++|.+.|+++.. --.+..-....+.|+.+..+| ..+.|++.+.++.|.+||....
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~q-------------si~V~~~~~~~~~VY~m~~~P---~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQ-------------SIYVANENNNRGDVYHMDQHP---TDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred eeEecCCCcceeEeeecccce-------------eeeeecccCcccceeecccCC---CCceEEEEecCceEEEEeccCC
Confidence 5555555 7999999998633 111222222345899999999 7888999999999999999765
Q ss_pred eEEEE--EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccc
Q 000654 168 SIILE--VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1371)
Q Consensus 168 ~~~~~--l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~ 245 (1371)
..... +........+++.|++.. ..+|++.+..+-+-+||.+.... + ++ .
T Consensus 182 ~~~~~~~~~AN~~~~F~t~~F~P~~--P~Li~~~~~~~G~~~~D~R~~~~-~---------------------~~----~ 233 (609)
T KOG4227|consen 182 QNPISLVLPANSGKNFYTAEFHPET--PALILVNSETGGPNVFDRRMQAR-P---------------------VY----Q 233 (609)
T ss_pred CCCCceeeecCCCccceeeeecCCC--ceeEEeccccCCCCceeeccccc-h---------------------HH----h
Confidence 42211 222334456777775443 45788888889999999881100 0 00 0
Q ss_pred eeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecC-------CccEEEEEEc-
Q 000654 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-------NARVWDCCLT- 317 (1371)
Q Consensus 246 ~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh-------~~~I~~l~~s- 317 (1371)
......+......-.++.|+|+|..|.+--.-..-.+||+...++. + ....| ...+.+++|.
T Consensus 234 ~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~----V------~k~D~N~~GY~N~~T~KS~~F~~ 303 (609)
T KOG4227|consen 234 RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF----V------LKSDHNPNGYCNIKTIKSMTFID 303 (609)
T ss_pred hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce----e------EeccCCCCcceeeeeeeeeeeec
Confidence 0000111111222367889999998887666555667888876652 1 11222 2356778887
Q ss_pred CCEEEEEeCCCeEEEEeCC------C------------------cEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEE
Q 000654 318 DSFIITAGEDCTCRVWGSD------G------------------KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (1371)
Q Consensus 318 ~~~L~Sgs~Dg~I~VWd~~------g------------------~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~ 373 (1371)
+..++||+.+-.|.+|.+. | +.+..+++|.. -+..+.|+|...+|++.|-.+.++
T Consensus 304 D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~SSGVE~~~K 382 (609)
T KOG4227|consen 304 DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS-VPNQVRFSQHNNLLVSSGVENSFK 382 (609)
T ss_pred ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc-cccceeecCCcceEeccchhhhee
Confidence 4669999999999999871 1 23567889998 689999999999999999999999
Q ss_pred EEEc
Q 000654 374 VHQF 377 (1371)
Q Consensus 374 lwdl 377 (1371)
||..
T Consensus 383 lWS~ 386 (609)
T KOG4227|consen 383 LWSD 386 (609)
T ss_pred cccc
Confidence 9986
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.3e-12 Score=150.37 Aligned_cols=267 Identities=16% Similarity=0.199 Sum_probs=175.8
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC--------CeEEEEEEeecCccEEEEEeeccccccCCCCcc
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--------GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~s--------g~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~ 86 (1371)
|...|++++|+ |. ...|++++ +++|.+|+++. -+.+.+|+.|++ +|.|+++. +.+
T Consensus 293 ~~d~ir~l~~~--~s----ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g-PVl~v~v~-------~n~-- 356 (577)
T KOG0642|consen 293 HDDCIRALAFH--PS----EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG-PVLCVVVP-------SNG-- 356 (577)
T ss_pred chhhhhhhhcC--CC----CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC-ceEEEEec-------CCc--
Confidence 77789999998 76 56677766 89999999932 257889999988 99999998 777
Q ss_pred eeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECC
Q 000654 87 VTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1371)
Q Consensus 87 ~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~ 165 (1371)
..+.++| ||+|+.|++.....+...+.| ......+.||.+.||.+++++ ....|++++.||++++|+..
T Consensus 357 --~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp-----~vl~~~l~Ghtdavw~l~~s~---~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 357 --EHCYSGGIDGTIRCWNLPPNQDPDDSYDP-----SVLSGTLLGHTDAVWLLALSS---TKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred --eEEEeeccCceeeeeccCCCCCcccccCc-----chhccceeccccceeeeeecc---cccceeeecCCceEEeeccC
Confidence 4455554 999999988632211111111 245567889999999999998 77889999999999999987
Q ss_pred CCeEEEEEecCC-cceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccc
Q 000654 166 NSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1371)
Q Consensus 166 ~~~~~~~l~~~~-~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~ 244 (1371)
.... ..+..+. .....++.+.. .+-...++....+.-.+.+..... .+++....
T Consensus 427 ~~~~-~~f~~~~e~g~Plsvd~~s--s~~a~~~~s~~~~~~~~~~~ev~s---------------------~~~~~~s~- 481 (577)
T KOG0642|consen 427 EESP-CTFGEPKEHGYPLSVDRTS--SRPAHSLASFRFGYTSIDDMEVVS---------------------DLLIFESS- 481 (577)
T ss_pred CcCc-cccCCccccCCcceEeecc--chhHhhhhhcccccccchhhhhhh---------------------heeecccc-
Confidence 7655 2222221 11223333321 111112221112222222222000 00000000
Q ss_pred ceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEE
Q 000654 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1371)
Q Consensus 245 ~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~ 322 (1371)
......-...+..|.+.|.+.+.+++-.|+.|+++|...+... .....|...++++++. +.+|+
T Consensus 482 ----~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l----------~s~~a~~~svtslai~~ng~~l~ 547 (577)
T KOG0642|consen 482 ----ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL----------HSMVAHKDSVTSLAIDPNGPYLM 547 (577)
T ss_pred ----CCCcccccCccceEEecCCCCeeEecccCCceecccccccccc----------hheeeccceecceeecCCCceEE
Confidence 0000011244677888999999999999999999999987662 2566788899999997 68999
Q ss_pred EEeCCCeEEEEeC-CCcEEEEEeecc
Q 000654 323 TAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1371)
Q Consensus 323 Sgs~Dg~I~VWd~-~g~~l~~l~~h~ 347 (1371)
+++.||.+++|.+ ...++.....|.
T Consensus 548 s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 548 SGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eecCCceeehhhccchheeecccccc
Confidence 9999999999999 555555555454
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1e-11 Score=141.39 Aligned_cols=171 Identities=15% Similarity=0.167 Sum_probs=123.1
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEeC-CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEE-
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL- 93 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~d-g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~- 93 (1371)
|.|-|.|++|+ .+ |.+|++|+| -.+.|||...-++++.+...+...|+++.|- |..+ ++++++
T Consensus 49 H~GCVN~LeWn--~d----G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFv-------P~tn--nriv~sg 113 (758)
T KOG1310|consen 49 HTGCVNCLEWN--AD----GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFV-------PYTN--NRIVLSG 113 (758)
T ss_pred ccceecceeec--CC----CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeee-------ccCC--CeEEEec
Confidence 88999999999 87 899999995 8899999998899988876566689999999 4332 245544
Q ss_pred ECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCC-cEEEEEECCCcEEEEECCCCeE-EE
Q 000654 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSI-IL 171 (1371)
Q Consensus 94 ~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg-~~Latgs~Dg~I~vWd~~~~~~-~~ 171 (1371)
+||+.|+++|+.... +.. .|.. -.+.......|.+.|..++..| ++ ..+-++++||+|+-+|+..... ..
T Consensus 114 AgDk~i~lfdl~~~~--~~~--~d~~-~~~~~~~~~cht~rVKria~~p---~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSK--EGG--MDHG-MEETTRCWSCHTDRVKRIATAP---NGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred cCcceEEEEeccccc--ccc--cccC-ccchhhhhhhhhhhhhheecCC---CCCceEEEecCCcceeeecccCCccCCc
Confidence 459999999998522 000 0000 1344566778999999999998 66 7889999999999999976321 11
Q ss_pred EEe--------cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcc
Q 000654 172 EVH--------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 172 ~l~--------~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~ 211 (1371)
... .+..-.++++.+. ..+..+|+.|+.|-..++||.+
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltis--p~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTIS--PSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cccccHHHHHhchhhheeeeeeec--CCCCceEEecCCCchhhhhhhh
Confidence 110 1111223444442 2345789999999999999965
No 192
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.43 E-value=1.5e-11 Score=149.25 Aligned_cols=276 Identities=17% Similarity=0.116 Sum_probs=186.5
Q ss_pred CcEEEEECCCC-eEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE-CCCeEEEEEeccCCCCCCCCCCcccee
Q 000654 44 SQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVN 121 (1371)
Q Consensus 44 g~I~Iwd~~sg-~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~-gd~sV~vwdl~~~~~~~~~~~~~~~v~ 121 (1371)
+.+.||+++.. ..-..+. ....|.++.|+ |.. ..+++++ .+|+|.+||+....... .
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~--~~s~v~~~~f~-------p~~---p~ll~gG~y~GqV~lWD~~~~~~~~---------~ 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE--SPSEVTCLKFC-------PFD---PNLLAGGCYNGQVVLWDLRKGSDTP---------P 280 (555)
T ss_pred ceEEEEecCCCCCceEEEe--cCCceeEEEec-------cCC---cceEEeeccCceEEEEEccCCCCCC---------C
Confidence 37999999875 3333333 33479999999 543 1344443 38999999998644100 0
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEE-----EEEe------cCCcceEEEEEeeccC
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-----LEVH------SPERCLLYSMKLWGDN 190 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~-----~~l~------~~~~~~v~s~~~~~~s 190 (1371)
...-.....|.++++.+.|.... .+.-+++++.||.|..|+++.-... .... ......+.++.|...
T Consensus 281 s~ls~~~~sh~~~v~~vvW~~~~-~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~- 358 (555)
T KOG1587|consen 281 SGLSALEVSHSEPVTAVVWLQNE-HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT- 358 (555)
T ss_pred cccccccccCCcCeEEEEEeccC-CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC-
Confidence 11222345789999999998722 2356999999999999988643221 0001 112233556666544
Q ss_pred CCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCE
Q 000654 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1371)
Q Consensus 191 ~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~ 270 (1371)
+-..++.|+.+|.|..-+....+..+. ...+....+..|.++|+.+.++|=+..
T Consensus 359 -~p~~FiVGTe~G~v~~~~r~g~~~~~~-------------------------~~~~~~~~~~~h~g~v~~v~~nPF~~k 412 (555)
T KOG1587|consen 359 -DPNHFIVGTEEGKVYKGCRKGYTPAPE-------------------------VSYKGHSTFITHIGPVYAVSRNPFYPK 412 (555)
T ss_pred -CCceEEEEcCCcEEEEEeccCCccccc-------------------------ccccccccccccCcceEeeecCCCccc
Confidence 445799999999998854431100000 011334456679999999999997765
Q ss_pred EEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeC---CCcEEEEEe
Q 000654 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---DGKQLKMIK 344 (1371)
Q Consensus 271 LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~---~g~~l~~l~ 344 (1371)
++..+.|.+|+||.-.....+ + ..+..+...+++++|+ +..|+++..||.+.+||+ ...++.+.+
T Consensus 413 ~fls~gDW~vriWs~~~~~~P----l-----~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~ 483 (555)
T KOG1587|consen 413 NFLSVGDWTVRIWSEDVIASP----L-----LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK 483 (555)
T ss_pred eeeeeccceeEeccccCCCCc----c-----hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence 544444999999997732221 1 2455667779999999 578999999999999999 445666666
Q ss_pred eccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 345 ~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.+.. ..+.+.|+++|+.|+.|...|++.+|++.
T Consensus 484 ~~~~-~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 484 VCSP-ALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccc-ccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 5644 57778889999999999999999999994
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=8.4e-11 Score=122.21 Aligned_cols=247 Identities=11% Similarity=0.133 Sum_probs=166.6
Q ss_pred cEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCC
Q 000654 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1371)
Q Consensus 67 ~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~d 146 (1371)
.|+.-+++ |.++ .+++...+|.|.++.+..-. ..++..|. ...+-..++|.++|+.++|..
T Consensus 12 tvf~qa~s-------p~~~---~l~agn~~G~iav~sl~sl~-s~sa~~~g----k~~iv~eqahdgpiy~~~f~d---- 72 (325)
T KOG0649|consen 12 TVFAQAIS-------PSKQ---YLFAGNLFGDIAVLSLKSLD-SGSAEPPG----KLKIVPEQAHDGPIYYLAFHD---- 72 (325)
T ss_pred HHHHHhhC-------Ccce---EEEEecCCCeEEEEEehhhh-ccccCCCC----CcceeeccccCCCeeeeeeeh----
Confidence 34555666 7662 33444448999999997422 11221221 233445589999999999975
Q ss_pred CcEEEEEECCCcEEEEECCCCeE------EEEEecCC------cceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCC
Q 000654 147 NRSLAIGCSDNSIRVWDISNSSI------ILEVHSPE------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1371)
Q Consensus 147 g~~Latgs~Dg~I~vWd~~~~~~------~~~l~~~~------~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~ 214 (1371)
.+|++|+ ||.|+=|....... +.++..|. -..+.++.+ .|..+-++.++.|+.++-||++
T Consensus 73 -~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l---dP~enSi~~AgGD~~~y~~dlE--- 144 (325)
T KOG0649|consen 73 -DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL---DPSENSILFAGGDGVIYQVDLE--- 144 (325)
T ss_pred -hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe---ccCCCcEEEecCCeEEEEEEec---
Confidence 5676765 69999887654221 11111111 112334433 4444555555579999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCC
Q 000654 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (1371)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~ 294 (1371)
+++....+.||++.|.++.--.....++||++||++|+||.++.+.
T Consensus 145 ------------------------------~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~---- 190 (325)
T KOG0649|consen 145 ------------------------------DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH---- 190 (325)
T ss_pred ------------------------------CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce----
Confidence 6778889999999999999877777899999999999999999876
Q ss_pred Cceeeec----eEeecC-CccEEEEEEcCCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEEC
Q 000654 295 SIEEVGS----SVLYGH-NARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1371)
Q Consensus 295 ~~~~~~~----~~~~gh-~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~ 368 (1371)
++.+.+ ..+..| ..+|-+++.+..+++.|+ ...+.+|.+ ..++...|.-.. +|.-+.|.. ..++.+|.
T Consensus 191 -v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~ 264 (325)
T KOG0649|consen 191 -VSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGE 264 (325)
T ss_pred -eEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEecc
Confidence 333321 123333 346888888888888776 457899999 556655554332 367788854 56888888
Q ss_pred CCcEEEEEcCCC
Q 000654 369 DSAIKVHQFQAF 380 (1371)
Q Consensus 369 Dg~I~lwdl~~~ 380 (1371)
...|.-|.+.|.
T Consensus 265 g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 265 GNHVQSYTLNGV 276 (325)
T ss_pred ccceeeeeeccE
Confidence 889999999763
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.40 E-value=3e-10 Score=134.35 Aligned_cols=262 Identities=16% Similarity=0.194 Sum_probs=164.2
Q ss_pred CCccEEEEeCCC-Cc--------ccCcEEEEEEEecCCCCCCCCEEEEEe--CCcEEEEECC-CCeE--EEEEEeecCcc
Q 000654 2 GKKDLSEWRLDV-GQ--------YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLE-AGTL--IRPFQVFHGIR 67 (1371)
Q Consensus 2 ~D~tV~iWdl~~-~~--------h~~~Vtavafs~~pd~~~~~~llaaG~--dg~I~Iwd~~-sg~~--l~~~~~~~~~~ 67 (1371)
.|+.|++||+.+ ++ ..+....++++ |+ +++|+++. ++.|.+|++. ++++ +.... ..+ .
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~s--pd----~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~-~ 81 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVIS--PD----KRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG-S 81 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEEC--CC----CCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC-C
Confidence 589999999964 32 23457889999 98 78887765 5899999986 4443 22222 122 4
Q ss_pred EEEEEeeccccccCCCCcceeeEEEEE-CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCC
Q 000654 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1371)
Q Consensus 68 I~~i~~s~~~~~~~pdg~~~~~~la~~-gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~d 146 (1371)
...++|+ |+++ .++++. +++.|.+|+++.... ..+.+..+.+ ......++++| +
T Consensus 82 p~~i~~~-------~~g~---~l~v~~~~~~~v~v~~~~~~g~-----------~~~~~~~~~~-~~~~~~~~~~p---~ 136 (330)
T PRK11028 82 PTHISTD-------HQGR---FLFSASYNANCVSVSPLDKDGI-----------PVAPIQIIEG-LEGCHSANIDP---D 136 (330)
T ss_pred ceEEEEC-------CCCC---EEEEEEcCCCeEEEEEECCCCC-----------CCCceeeccC-CCcccEeEeCC---C
Confidence 6789999 9983 444443 489999999974220 0112222222 23467788999 8
Q ss_pred CcEEEE-EECCCcEEEEECCCCeEEE-----EEecCCcceEEEEEeeccCCCCcEEEEEeC-CCeEEEEEcccCCccccC
Q 000654 147 NRSLAI-GCSDNSIRVWDISNSSIIL-----EVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLL 219 (1371)
Q Consensus 147 g~~Lat-gs~Dg~I~vWd~~~~~~~~-----~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~-dg~I~vWd~~~~~~~~~~ 219 (1371)
++++++ ...++.|.+||+.+...+. ....+.+.....+.+ ++++.++++... ++.|.+|++....
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~---~pdg~~lyv~~~~~~~v~v~~~~~~~----- 208 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF---HPNQQYAYCVNELNSSVDVWQLKDPH----- 208 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE---CCCCCEEEEEecCCCEEEEEEEeCCC-----
Confidence 888754 4557999999997633221 111122222345555 788999888765 8999999997110
Q ss_pred CCCCCCCCCCCCCCcceeeecccccceeeEEEEec------ccCCEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCcccC
Q 000654 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG------HEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKD 292 (1371)
Q Consensus 220 ~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g------H~~~I~~v~~spdg~~LaS~s-~Dg~VriWdl~~~~~~~ 292 (1371)
+ ..+.+..+.. +......+.++|++++|+++. .++.|.+|++......
T Consensus 209 ---------------~---------~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~- 263 (330)
T PRK11028 209 ---------------G---------EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV- 263 (330)
T ss_pred ---------------C---------CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-
Confidence 0 1112222211 122344689999999988875 4789999999654321
Q ss_pred CCCceeeeceEeecCCccEEEEEEc--CCEEEEEeC-CCeEEEEeC
Q 000654 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRVWGS 335 (1371)
Q Consensus 293 ~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~-Dg~I~VWd~ 335 (1371)
...++ ....+ ...+.++++ +++|+++.. +++|.+|++
T Consensus 264 ---~~~~~-~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 264 ---LSFEG-HQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ---EEEeE-EEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 12121 01111 234567777 678887765 899999987
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.40 E-value=3e-11 Score=130.61 Aligned_cols=223 Identities=13% Similarity=0.139 Sum_probs=167.1
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEeC-CcEEEEECCCC---eEEEEEEeecCccEEEEEeeccccccCCCCcceeeEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~d-g~I~Iwd~~sg---~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~l 91 (1371)
..+||+|.||+ +| +..+|.+.. ..|.||..... +..++++.|.. .|++|.|+ |.+ ..|
T Consensus 9 ~~~pitchAwn--~d----rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~vtgvdWa-------p~s----nrI 70 (361)
T KOG1523|consen 9 LLEPITCHAWN--SD----RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IVTGVDWA-------PKS----NRI 70 (361)
T ss_pred ccCceeeeeec--CC----CceEEeccCCceEEEEEecCCCCceeceehhhhCc-ceeEEeec-------CCC----Cce
Confidence 36899999999 88 778888775 79999998655 46788887766 89999999 776 355
Q ss_pred EEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE-
Q 000654 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI- 169 (1371)
Q Consensus 92 a~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~- 169 (1371)
++++ |+.-.||....+. ..++.-.+..++..+++|.|+| .++.+|+|+.-..|.||-++...-
T Consensus 71 vtcs~drnayVw~~~~~~------------~WkptlvLlRiNrAAt~V~WsP---~enkFAVgSgar~isVcy~E~ENdW 135 (361)
T KOG1523|consen 71 VTCSHDRNAYVWTQPSGG------------TWKPTLVLLRINRAATCVKWSP---KENKFAVGSGARLISVCYYEQENDW 135 (361)
T ss_pred eEccCCCCccccccCCCC------------eeccceeEEEeccceeeEeecC---cCceEEeccCccEEEEEEEecccce
Confidence 5555 9999999984322 2556666777889999999999 999999999999999988765432
Q ss_pred --EEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccccee
Q 000654 170 --ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1371)
Q Consensus 170 --~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~ 247 (1371)
-+.++.+.+..+.++.+ .++..+|++|+.|+..+|+...-..... ..+..+=++.. .-+.
T Consensus 136 WVsKhikkPirStv~sldW---hpnnVLlaaGs~D~k~rVfSayIK~Vde----kpap~pWgsk~-----------PFG~ 197 (361)
T KOG1523|consen 136 WVSKHIKKPIRSTVTSLDW---HPNNVLLAAGSTDGKCRVFSAYIKGVDE----KPAPTPWGSKM-----------PFGQ 197 (361)
T ss_pred ehhhhhCCccccceeeeec---cCCcceecccccCcceeEEEEeeecccc----CCCCCCCccCC-----------cHHH
Confidence 24456677778888888 5678899999999999999865211111 11111111111 1233
Q ss_pred eEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 000654 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1371)
Q Consensus 248 ~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~ 289 (1371)
.+..+....++|+.+.|+|+|..|+-.+.|.++.+=|.....
T Consensus 198 lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 198 LMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred HHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 444454567899999999999999999999999999987764
No 196
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.40 E-value=7.1e-11 Score=146.21 Aligned_cols=186 Identities=11% Similarity=0.139 Sum_probs=122.1
Q ss_pred EECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000654 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1371)
Q Consensus 162 Wd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1371)
|+. +|..+..+..|..... .++. .++++.++++|+.||+|++|+.+.-. .
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~-k~a~--s~~~~s~FvsgS~DGtVKvW~~~k~~--~------------------------ 1083 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVI-KLAV--SSEHTSLFVSGSDDGTVKVWNLRKLE--G------------------------ 1083 (1431)
T ss_pred CCc-cceEeehhhhcccccc-ceee--cCCCCceEEEecCCceEEEeeehhhh--c------------------------
Confidence 443 4666777766665544 3322 36677999999999999999987100 0
Q ss_pred cccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---C
Q 000654 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---D 318 (1371)
Q Consensus 242 ~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~ 318 (1371)
.....+...++.--...+.++.+.+.+..+|.++.||.|++.++...........+... .........|..-+|. .
T Consensus 1084 ~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri-~n~~~~g~vv~m~a~~~~~~ 1162 (1431)
T KOG1240|consen 1084 EGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRI-PNLKKDGVVVSMHAFTAIVQ 1162 (1431)
T ss_pred CcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeec-ccccCCCceEEeeccccccc
Confidence 00123333444445678999999999999999999999999999873221000011000 0111222233333443 3
Q ss_pred C-EEEEEeCCCeEEEEeC-CCcEEE--EEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 319 S-FIITAGEDCTCRVWGS-DGKQLK--MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 319 ~-~L~Sgs~Dg~I~VWd~-~g~~l~--~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
. .|+.+...+.|..||. ...... .....+| .|++++.+|.+.++++|..-|.+.+||++-
T Consensus 1163 S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG-~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1163 SHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred ceeEEEEEeccceEEecchhhhhHHhhhcCcccc-ceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 4 7888888999999998 322222 2223345 599999999999999999999999999963
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.39 E-value=4e-10 Score=133.26 Aligned_cols=274 Identities=14% Similarity=0.137 Sum_probs=166.8
Q ss_pred EEEEEeCCcEEEEECCC-Ce--EEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE-CCCeEEEEEeccCCCCCC
Q 000654 37 FLLAGSGSQVLLYDLEA-GT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNS 112 (1371)
Q Consensus 37 llaaG~dg~I~Iwd~~s-g~--~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~-gd~sV~vwdl~~~~~~~~ 112 (1371)
|++.+.++.|.+||+.+ ++ ++..+.. ....+.++++ |+++ .++++. .++.|.+|+++...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~s-------pd~~---~lyv~~~~~~~i~~~~~~~~g---- 68 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVIS-------PDKR---HLYVGVRPEFRVLSYRIADDG---- 68 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEEC-------CCCC---EEEEEECCCCcEEEEEECCCC----
Confidence 44445579999999964 43 4444442 2357888999 8883 444443 37899999997311
Q ss_pred CCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC-CCcEEEEECCC-Ce---EEEEEecCCcceEEEEEee
Q 000654 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISN-SS---IILEVHSPERCLLYSMKLW 187 (1371)
Q Consensus 113 ~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~-Dg~I~vWd~~~-~~---~~~~l~~~~~~~v~s~~~~ 187 (1371)
.++...... ..+....++|+| ++++|++++. ++.|.+|++.+ +. .+..+... .....+.+
T Consensus 69 --------~l~~~~~~~-~~~~p~~i~~~~---~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~- 133 (330)
T PRK11028 69 --------ALTFAAESP-LPGSPTHISTDH---QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL--EGCHSANI- 133 (330)
T ss_pred --------ceEEeeeec-CCCCceEEEECC---CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC--CcccEeEe-
Confidence 022222222 223467899999 9998877764 88999999964 32 22222221 12334444
Q ss_pred ccCCCCcEEEE-EeCCCeEEEEEcccCC-ccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEc
Q 000654 188 GDNLEALRIAS-GTIYNEIIVWKVDWEH-VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (1371)
Q Consensus 188 ~~s~d~~~Las-gs~dg~I~vWd~~~~~-~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~s 265 (1371)
+|++.++++ ...++.|.+||+.... +.. .......... ......++|+
T Consensus 134 --~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~---------------------------~~~~~~~~~~-g~~p~~~~~~ 183 (330)
T PRK11028 134 --DPDNRTLWVPCLKEDRIRLFTLSDDGHLVA---------------------------QEPAEVTTVE-GAGPRHMVFH 183 (330)
T ss_pred --CCCCCEEEEeeCCCCEEEEEEECCCCcccc---------------------------cCCCceecCC-CCCCceEEEC
Confidence 778877755 5566999999997211 000 0000011111 1335678999
Q ss_pred CCCCEEEEEeC-CCcEEEEEccCCcccCCCCceeeeceEee------cCCccEEEEEEc--CCEEEEEeC-CCeEEEEeC
Q 000654 266 SCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLY------GHNARVWDCCLT--DSFIITAGE-DCTCRVWGS 335 (1371)
Q Consensus 266 pdg~~LaS~s~-Dg~VriWdl~~~~~~~~~~~~~~~~~~~~------gh~~~I~~l~~s--~~~L~Sgs~-Dg~I~VWd~ 335 (1371)
|++++++++.. +++|.+|++...... .+.+. .+. .+......+.++ +++++++.+ ++.|.+|++
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~----~~~~~--~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGE----IECVQ--TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCC----EEEEE--EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 99999988776 899999999743110 12121 111 112233457777 468888754 789999998
Q ss_pred --CCcEEEEEeec--cCcCEEEEEEcCCCCEEEEEEC-CCcEEEEEcC
Q 000654 336 --DGKQLKMIKEH--IGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (1371)
Q Consensus 336 --~g~~l~~l~~h--~~~~V~sl~~spdg~~L~Tgg~-Dg~I~lwdl~ 378 (1371)
++..+. +..+ .+...+.+.++|+|++|++++. +++|.+|+++
T Consensus 258 ~~~~~~~~-~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 258 SEDGSVLS-FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eCCCCeEE-EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 332222 2222 1113567899999999988775 8999999884
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.39 E-value=1.3e-12 Score=154.87 Aligned_cols=286 Identities=14% Similarity=0.300 Sum_probs=183.7
Q ss_pred eeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEE
Q 000654 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (1371)
Q Consensus 246 ~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~S 323 (1371)
.+.+..+.||...|+|+.|...|.++++|++|+.|+||...+..+. ....||.+.|+.++.+ .-++++
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l----------As~rGhs~ditdlavs~~n~~iaa 249 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL----------ASCRGHSGDITDLAVSSNNTMIAA 249 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh----------ccCCCCccccchhccchhhhhhhh
Confidence 3445667899999999999999999999999999999998887662 4889999999999997 467889
Q ss_pred EeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEE
Q 000654 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFS 402 (1371)
Q Consensus 324 gs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s 402 (1371)
++.|..|++|.+ ++.++..+.+|.+ +|++|+|+|-. +.+.||++++||.+-.. .++.
T Consensus 250 aS~D~vIrvWrl~~~~pvsvLrghtg-avtaiafsP~~----sss~dgt~~~wd~r~~~-----------------~~y~ 307 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVLRGHTG-AVTAIAFSPRA----SSSDDGTCRIWDARLEP-----------------RIYV 307 (1113)
T ss_pred cccCceEEEEecCCCchHHHHhcccc-ceeeeccCccc----cCCCCCceEeccccccc-----------------cccC
Confidence 999999999999 9999999999999 79999999964 77899999999985110 0111
Q ss_pred eeecCCccceeeccCCCccEEEEEEecCCcEEEE-EcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCC
Q 000654 403 IKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPC 481 (1371)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~-t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~ 481 (1371)
...++. .....+.++.|...+.-+.+ +.++.-. .+......|.. .. +.+... ++
T Consensus 308 prp~~~--------~~~~~~~s~~~~~~~~~f~Tgs~d~ea~---n~e~~~l~~~~------~~----lif~t~----ss 362 (1113)
T KOG0644|consen 308 PRPLKF--------TEKDLVDSILFENNGDRFLTGSRDGEAR---NHEFEQLAWRS------NL----LIFVTR----SS 362 (1113)
T ss_pred CCCCCc--------ccccceeeeeccccccccccccCCcccc---cchhhHhhhhc------cc----eEEEec----cc
Confidence 000000 00012333333333322222 2222111 01100011110 00 001000 01
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCC-cEEEEEcCCCcEEEEeCCCCCCccc
Q 000654 482 GIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGH-RFIFTADPKGRLKLWQLCDPFSSVC 560 (1371)
Q Consensus 482 ~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~-~~L~s~s~dg~I~lWdi~~~~~~~~ 560 (1371)
.-..+.++.-.+-.+++|++.++...-. .....+. . ..+-++|-+ +...+++.||...|||+-.+..
T Consensus 363 d~~~~~~~ar~~~~~~vwnl~~g~l~H~------l~ghsd~-~--yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p--- 430 (1113)
T KOG0644|consen 363 DLSSIVVTARNDHRLCVWNLYTGQLLHN------LMGHSDE-V--YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP--- 430 (1113)
T ss_pred cccccceeeeeeeEeeeeecccchhhhh------hcccccc-e--eeeeecCCCcHhhhhccCCCceEeeecccCCc---
Confidence 1124566666777899999988754421 0111111 1 123344544 4456899999999999875421
Q ss_pred cccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcc
Q 000654 561 YESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1371)
Q Consensus 561 ~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~ 612 (1371)
.+.+..+|. .+....||+||..+++.+.-|.++|+....+
T Consensus 431 -----------ik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 431 -----------IKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred -----------ceeeecccc-eeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 112223443 4556689999999999999999999976543
No 199
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.38 E-value=9.6e-12 Score=130.79 Aligned_cols=306 Identities=15% Similarity=0.110 Sum_probs=182.3
Q ss_pred eEeecCCccEEEEEEc-CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 302 SVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 302 ~~~~gh~~~I~~l~~s-~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
+.+.+|.+.++++.|. ..+|++|..-|.+.+|++ +.+.+..++.+....|+.+..-|+ ..|.|-|.|+.+.+|++..
T Consensus 8 fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred eEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 4778999999999998 678999999999999999 666777788666668999998887 6789999999999999953
Q ss_pred CCccccc-CCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEEe
Q 000654 380 FLPGSLE-SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (1371)
Q Consensus 380 ~~~~~l~-~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i 458 (1371)
....... .-...++|. -|++. .......-+.+.|+ .|.-. ....+.....-.++
T Consensus 87 s~~i~i~Si~~nslgFC----rfSl~------------~~~k~~eqll~yp~--------rgsde-~h~~D~g~~tqv~i 141 (323)
T KOG0322|consen 87 SAFISIHSIVVNSLGFC----RFSLV------------KKPKNSEQLLEYPS--------RGSDE-THKQDGGDTTQVQI 141 (323)
T ss_pred cceEEEeeeeccccccc----cceec------------cCCCcchhheecCC--------cccch-hhhhccCccceeEc
Confidence 1110000 000000110 00000 00000011111111 11100 11111111111111
Q ss_pred Eee---cCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCcccccee---eeeeeccCcccceeEEEEeec
Q 000654 459 LQV---SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLS---FTFTWSAGIERQLLGTYWCKS 532 (1371)
Q Consensus 459 ~~~---~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~---~~~~~~~~~~~~il~~~~~~s 532 (1371)
... .....+.|.+.... ....-+++.|-++|.+.+||+.++....... ....-...+....++ +-+.
T Consensus 142 ~dd~~~~Klgsvmc~~~~~~-----c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls--ldya 214 (323)
T KOG0322|consen 142 ADDSERSKLGSVMCQDKDHA-----CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS--LDYA 214 (323)
T ss_pred cCchhccccCceeeeecccc-----ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCccee--eeec
Confidence 111 12344455543222 2344678889999999999999864322111 001111122222222 2222
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcc
Q 000654 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1371)
Q Consensus 533 ~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~ 612 (1371)
+....=++++.+..+..|.++.... .+..+.+.... .-.|..+..-||++++|+++-||.|+||++.+
T Consensus 215 s~~~rGisgga~dkl~~~Sl~~s~g----------slq~~~e~~lk-npGv~gvrIRpD~KIlATAGWD~RiRVyswrt- 282 (323)
T KOG0322|consen 215 SSCDRGISGGADDKLVMYSLNHSTG----------SLQIRKEITLK-NPGVSGVRIRPDGKILATAGWDHRIRVYSWRT- 282 (323)
T ss_pred hhhcCCcCCCccccceeeeeccccC----------cccccceEEec-CCCccceEEccCCcEEeecccCCcEEEEEecc-
Confidence 3233345777888888998875321 11222222212 22366777889999999999999999999885
Q ss_pred cccccccccccccccccccccccCCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEE
Q 000654 613 LLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1371)
Q Consensus 613 ~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l 669 (1371)
+.|+.+++ -|. .+|++|+|+ ++...++.+|.|+.|.+|++
T Consensus 283 ------------l~pLAVLk-yHs-agvn~vAfs---pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 283 ------------LNPLAVLK-YHS-AGVNAVAFS---PDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------------CCchhhhh-hhh-cceeEEEeC---CCCchhhhccCCceEEeeec
Confidence 57777776 444 799999999 55688999999999999985
No 200
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.37 E-value=1.2e-12 Score=147.01 Aligned_cols=263 Identities=16% Similarity=0.202 Sum_probs=201.1
Q ss_pred EEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeE
Q 000654 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (1371)
Q Consensus 21 tavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV 99 (1371)
+.+.++ .+ |++|+.|. -|.|..+|+.+++++.++.+-+ .|..+.|. ..- .++|++-.+.+
T Consensus 133 Y~~~yt--rn----GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E--tv~Dv~~L-------Hne----q~~AVAQK~y~ 193 (545)
T KOG1272|consen 133 YHLDYT--RN----GRHLLLGGRKGHLAAFDWVTKKLHFEINVME--TVRDVTFL-------HNE----QFFAVAQKKYV 193 (545)
T ss_pred eeeeec--CC----ccEEEecCCccceeeeecccceeeeeeehhh--hhhhhhhh-------cch----HHHHhhhhceE
Confidence 455666 55 78888877 5999999999999999998755 59999987 432 68888989999
Q ss_pred EEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcc
Q 000654 100 KLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERC 179 (1371)
Q Consensus 100 ~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~ 179 (1371)
.|||-. +..++.++.| ..|..+.|.| ---+|++++..|.++--|+.+|+.+..+....+.
T Consensus 194 yvYD~~----------------GtElHClk~~-~~v~rLeFLP---yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~ 253 (545)
T KOG1272|consen 194 YVYDNN----------------GTELHCLKRH-IRVARLEFLP---YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR 253 (545)
T ss_pred EEecCC----------------CcEEeehhhc-Cchhhhcccc---hhheeeecccCCceEEEeechhhhhHHHHccCCc
Confidence 999965 4567777766 5699999999 7778899999999999999999988777644432
Q ss_pred eEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCE
Q 000654 180 LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI 259 (1371)
Q Consensus 180 ~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I 259 (1371)
+..+ ..+|-...+-.|...|+|.+|... ...++..+..|.++|
T Consensus 254 -~~vm---~qNP~NaVih~GhsnGtVSlWSP~---------------------------------skePLvKiLcH~g~V 296 (545)
T KOG1272|consen 254 -TDVM---KQNPYNAVIHLGHSNGTVSLWSPN---------------------------------SKEPLVKILCHRGPV 296 (545)
T ss_pred -cchh---hcCCccceEEEcCCCceEEecCCC---------------------------------CcchHHHHHhcCCCc
Confidence 1222 236777788999999999999988 566777788899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC--C-
Q 000654 260 FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--D- 336 (1371)
Q Consensus 260 ~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~--~- 336 (1371)
.+|++.++|.++||.+.|+.++|||++.... +. +... .-....++++..-++.++....+.||.= .
T Consensus 297 ~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-----l~-----t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~ 365 (545)
T KOG1272|consen 297 SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-----LH-----TYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKG 365 (545)
T ss_pred ceEEECCCCcEEeecccccceeEeeeccccc-----cc-----eeec-CCCccccccccccceeeecCCeeeeehhhhcC
Confidence 9999999999999999999999999998654 11 2222 3456778888766777777778999963 3
Q ss_pred -CcEEEEEeec-cCcCEEEEEEcCCCCEEEEEECCC
Q 000654 337 -GKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDS 370 (1371)
Q Consensus 337 -g~~l~~l~~h-~~~~V~sl~~spdg~~L~Tgg~Dg 370 (1371)
+.....+..| .+..|..+.|.|-...|-.|-.-|
T Consensus 366 s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 366 SGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred CCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 2222222223 223699999999777666554444
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.36 E-value=2.6e-10 Score=125.70 Aligned_cols=240 Identities=15% Similarity=0.170 Sum_probs=165.2
Q ss_pred cEEEEeCCCCc------ccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEee--cCccEEEEEeecc
Q 000654 5 DLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF--HGIRLHGISCNFI 76 (1371)
Q Consensus 5 tV~iWdl~~~~------h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~--~~~~I~~i~~s~~ 76 (1371)
.+++.+++++. +.-+|.+|.++ .. |++++=. ..|.|||+.+-++++++..- +..++.++.++
T Consensus 69 ~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~-----RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n-- 138 (391)
T KOG2110|consen 69 KLKVVHFKKKTTICEIFFPTSILAVRMN--RK-----RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPN-- 138 (391)
T ss_pred eEEEEEcccCceEEEEecCCceEEEEEc--cc-----eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccC--
Confidence 36777877665 66789999998 43 5555544 45999999999999998764 22345555555
Q ss_pred ccccCCCCcceeeEEEEEC---CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEE
Q 000654 77 NCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1371)
Q Consensus 77 ~~~~~pdg~~~~~~la~~g---d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latg 153 (1371)
+++ ..+|.=+ .|.|.|||..+ ++....+..|.+.+-+++|++ +|.+|||+
T Consensus 139 -----~~n----~ylAyp~s~t~GdV~l~d~~n---------------l~~v~~I~aH~~~lAalafs~---~G~llATA 191 (391)
T KOG2110|consen 139 -----NAN----CYLAYPGSTTSGDVVLFDTIN---------------LQPVNTINAHKGPLAALAFSP---DGTLLATA 191 (391)
T ss_pred -----CCC----ceEEecCCCCCceEEEEEccc---------------ceeeeEEEecCCceeEEEECC---CCCEEEEe
Confidence 444 4666544 58999999975 677888889999999999999 99999999
Q ss_pred ECCCc-EEEEECCCCeEEEEEecCC-cceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCC
Q 000654 154 CSDNS-IRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1371)
Q Consensus 154 s~Dg~-I~vWd~~~~~~~~~l~~~~-~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~ 231 (1371)
+..|+ |||+.+.+|+.+.++.... .+.+|++.| ++++.+|++.+..++|.||.+..-...+.. .|.........
T Consensus 192 SeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F---s~ds~~L~~sS~TeTVHiFKL~~~~~~~~~-~p~~~~~~~~~ 267 (391)
T KOG2110|consen 192 SEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF---SPDSQFLAASSNTETVHIFKLEKVSNNPPE-SPTAGTSWFGK 267 (391)
T ss_pred ccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE---CCCCCeEEEecCCCeEEEEEecccccCCCC-CCCCCCcccch
Confidence 99997 6899999999999987554 456889888 888999999999999999999843211111 11111111110
Q ss_pred --------CCcceeeecccccceeeEEEEecccC---CEEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 000654 232 --------SDFKCFKLQDQQHTAVNLFRLVGHEG---SIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1371)
Q Consensus 232 --------~~~~~i~i~~~~~~~~~~~~l~gH~~---~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~ 288 (1371)
...+.-++|+.. +.......... .+..+.-.+...++..++.||.+..+.+...
T Consensus 268 ~sk~~~sylps~V~~~~~~~---R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 268 VSKAATSYLPSQVSSVLDQS---RKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhhhhhhcchhhhhhhhhc---cceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 011222223322 22222222222 2333333357789999999999999998764
No 202
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=4.5e-12 Score=143.23 Aligned_cols=310 Identities=14% Similarity=0.108 Sum_probs=216.1
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|.|-|..|.|. .. +..|++|+ |..|.+||+.+++....+...+...|..-.|-+. .+ +..++.+
T Consensus 141 H~GcVntV~FN--~~----Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~-----s~----d~ti~~~ 205 (559)
T KOG1334|consen 141 HKGCVNTVHFN--QR----GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF-----SG----DRTIVTS 205 (559)
T ss_pred CCCccceeeec--cc----CceeeccCccceEEeehhhccCcccccccccccchhhhhccCC-----CC----CcCceec
Confidence 78899999999 55 78999999 5999999999998877777555557887777732 12 2566665
Q ss_pred C-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEE
Q 000654 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1371)
Q Consensus 95 g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l 173 (1371)
+ ||.+++=.+.... ..+-...+..|.++|..++.-|. ....|.+++.|+.+.-.|+..+.....+
T Consensus 206 s~dgqvr~s~i~~t~------------~~e~t~rl~~h~g~vhklav~p~--sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 206 SRDGQVRVSEILETG------------YVENTKRLAPHEGPVHKLAVEPD--SPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred cccCceeeeeecccc------------ceecceecccccCccceeeecCC--CCCcccccccccceeeeeeccCCcccee
Confidence 5 9999998776422 13334566789999999999982 3456899999999999999876554333
Q ss_pred ec---CC--cceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceee
Q 000654 174 HS---PE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1371)
Q Consensus 174 ~~---~~--~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1371)
.+ .. +--+++++.. ..+...+++|+.|-.+++||.+.-..... ++.+. +..+
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~--P~nt~~faVgG~dqf~RvYD~R~~~~e~~---------------n~~~~------~f~p 328 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVD--PRNTNEFAVGGSDQFARVYDQRRIDKEEN---------------NGVLD------KFCP 328 (559)
T ss_pred eeeccCCccceeeeeEecC--CCCccccccCChhhhhhhhcccchhhccc---------------cchhh------hcCC
Confidence 22 11 2346666653 22445899999999999999872111100 00000 1111
Q ss_pred EEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCccc--CCCC-ceeeeceEeecCCc--cEEEEEEcC---CE
Q 000654 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK--DSDS-IEEVGSSVLYGHNA--RVWDCCLTD---SF 320 (1371)
Q Consensus 249 ~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~--~~~~-~~~~~~~~~~gh~~--~I~~l~~s~---~~ 320 (1371)
-+......-.|++++|+.++.-|.+...|-.|+++.-..+... .+.. .+.+.+..+.||.. .|..+-|-+ .+
T Consensus 329 ~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy 408 (559)
T KOG1334|consen 329 HHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY 408 (559)
T ss_pred ccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence 1111223456999999987766666666778999854433221 0111 11222235788864 478888873 79
Q ss_pred EEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 321 L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
+++|+.-|.|.||+- +++.+..+.+... -|.||.-+|--..||+.|-|..|+||...
T Consensus 409 VvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred EEecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCCchhhccCCccceeeecCC
Confidence 999999999999999 7788888887776 69999999999999999999999999883
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=8.4e-11 Score=143.19 Aligned_cols=268 Identities=14% Similarity=0.191 Sum_probs=173.9
Q ss_pred EEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeecc---CCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECC
Q 000654 90 EVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP---RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1371)
Q Consensus 90 ~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~---gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~ 165 (1371)
.++++. .-.|+|||.+... .+..+. .....|..+++.. ..|..+|.+|+.||.|+||+--
T Consensus 1078 ~i~~ad~r~~i~vwd~e~~~---------------~l~~F~n~~~~~t~Vs~l~liN-e~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKGR---------------LLNGFDNGAFPDTRVSDLELIN-EQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred eeEEcCCcceEEEEecccCc---------------eeccccCCCCCCCccceeeeec-ccchhheeeeccCceEEEeccc
Confidence 455554 5789999998633 222222 2235789999875 2355689999999999999752
Q ss_pred -C----CeEEEEEe-------cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCC
Q 000654 166 -N----SSIILEVH-------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1371)
Q Consensus 166 -~----~~~~~~l~-------~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1371)
. .+.+.... ...+. .+.+-+.-..|.++++| .-..|+|||..
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~---~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~---------------------- 1195 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGT---GLVVDWQQQSGHLLVTG-DVRSIRIWDAH---------------------- 1195 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCC---CeeeehhhhCCeEEecC-CeeEEEEEecc----------------------
Confidence 2 12222221 11111 11111222334444444 47899999998
Q ss_pred cceeeecccccceeeEEEEe-cccCCEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCcc-
Q 000654 234 FKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR- 310 (1371)
Q Consensus 234 ~~~i~i~~~~~~~~~~~~l~-gH~~~I~~v~~sp-dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~- 310 (1371)
....++.+. +-+..|+++.-+. .|..++.|-.||.||+||.+..... ..+ .....|..+
T Consensus 1196 -----------~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-----s~v--~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1196 -----------KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-----SLV--CVYREHNDVE 1257 (1387)
T ss_pred -----------cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-----ccc--eeecccCCcc
Confidence 333333332 3445566665543 4689999999999999999876431 111 266788887
Q ss_pred -EEEEEEc--C-CEEEEEeCCCeEEEEeCCCcE---EEEEeecc--CcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC
Q 000654 311 -VWDCCLT--D-SFIITAGEDCTCRVWGSDGKQ---LKMIKEHI--GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (1371)
Q Consensus 311 -I~~l~~s--~-~~L~Sgs~Dg~I~VWd~~g~~---l~~l~~h~--~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~ 381 (1371)
|..+.+. | ..|++|+.||.|++||+.... ..++..|. +..++++..+++...+|+|+. +.|+||++.|+.
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence 8888886 2 469999999999999994422 22333343 324999999999999999999 999999998876
Q ss_pred cccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCc
Q 000654 382 PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (1371)
Q Consensus 382 ~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~ 441 (1371)
+..+...... +......+.|++|+|-.-+++++..+.
T Consensus 1337 l~~~k~n~~F-----------------------~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1337 LNIIKYNPGF-----------------------MGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred hcccccCccc-----------------------ccCcCCCcceeeecchhHhhhhccCCc
Confidence 6655533211 112334578999999877777765554
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=3.3e-09 Score=117.24 Aligned_cols=232 Identities=13% Similarity=0.173 Sum_probs=162.9
Q ss_pred cEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCC
Q 000654 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1371)
Q Consensus 67 ~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~d 146 (1371)
.++.+.|. .|. ..|+++.....++|+.+.-. +... ...-.-.|.-+-|+.
T Consensus 7 ti~~~~~N-------qd~----~~lsvGs~~Gyk~~~~~~~~--------------k~~~-~~~~~~~IvEmLFSS---- 56 (391)
T KOG2110|consen 7 TINFIGFN-------QDS----TLLSVGSKDGYKIFSCSPFE--------------KCFS-KDTEGVSIVEMLFSS---- 56 (391)
T ss_pred ceeeeeec-------cce----eEEEccCCCceeEEecCchH--------------Hhhc-ccCCCeEEEEeeccc----
Confidence 35555566 554 56666666778888876421 1111 111122455555654
Q ss_pred CcEEEEEECCC--cEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCC
Q 000654 147 NRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1371)
Q Consensus 147 g~~Latgs~Dg--~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~ 224 (1371)
.++|..+.+. .+++.+.+.+..+-.+.-+.. +.++++ +...|+..-.+ .|.|||++
T Consensus 57 -SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~--IL~Vrm-----Nr~RLvV~Lee-~IyIydI~------------- 114 (391)
T KOG2110|consen 57 -SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTS--ILAVRM-----NRKRLVVCLEE-SIYIYDIK------------- 114 (391)
T ss_pred -ceeEEEecCCCceEEEEEcccCceEEEEecCCc--eEEEEE-----ccceEEEEEcc-cEEEEecc-------------
Confidence 5666665544 488999988888877766554 556665 34556665543 49999998
Q ss_pred CCCCCCCCCcceeeecccccceeeEEEEe---cccCCEEEEEEcCCCCEEEEE--eCCCcEEEEEccCCcccCCCCceee
Q 000654 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSV--SDDRSARIWEVRAEYWKDSDSIEEV 299 (1371)
Q Consensus 225 ~s~~~~~~~~~~i~i~~~~~~~~~~~~l~---gH~~~I~~v~~spdg~~LaS~--s~Dg~VriWdl~~~~~~~~~~~~~~ 299 (1371)
..+.++++. .+...+.++.+++.+.+||-= -..|.|.+||..+-+. +
T Consensus 115 --------------------~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~--------v 166 (391)
T KOG2110|consen 115 --------------------DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP--------V 166 (391)
T ss_pred --------------------cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee--------e
Confidence 455555544 344556666667777788763 2468899999988544 2
Q ss_pred eceEeecCCccEEEEEEc--CCEEEEEeCCCe-EEEEeC-CCcEEEEEeecc-CcCEEEEEEcCCCCEEEEEECCCcEEE
Q 000654 300 GSSVLYGHNARVWDCCLT--DSFIITAGEDCT-CRVWGS-DGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1371)
Q Consensus 300 ~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~-I~VWd~-~g~~l~~l~~h~-~~~V~sl~~spdg~~L~Tgg~Dg~I~l 374 (1371)
..+..|.+.+-+++|+ |.+||||++.|+ |||+.+ +|+.+..|+.-. .-.|.+++|+|++.+|++.|..++|++
T Consensus 167 --~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHi 244 (391)
T KOG2110|consen 167 --NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHI 244 (391)
T ss_pred --eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEE
Confidence 3778999999999998 799999999998 689999 899988886422 224899999999999999999999999
Q ss_pred EEcCCC
Q 000654 375 HQFQAF 380 (1371)
Q Consensus 375 wdl~~~ 380 (1371)
|.++..
T Consensus 245 FKL~~~ 250 (391)
T KOG2110|consen 245 FKLEKV 250 (391)
T ss_pred EEeccc
Confidence 999543
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.30 E-value=5.2e-10 Score=136.12 Aligned_cols=282 Identities=12% Similarity=0.098 Sum_probs=180.1
Q ss_pred CeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE--E---E
Q 000654 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--I---L 171 (1371)
Q Consensus 97 ~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~--~---~ 171 (1371)
+.+.||++..+. .+...+ .-...|.+++|+|+ +..+||.|..+|.|.+||+..+.. . .
T Consensus 222 ~~~~vW~~~~p~--------------~Pe~~~-~~~s~v~~~~f~p~--~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls 284 (555)
T KOG1587|consen 222 GVLLVWSLKNPN--------------TPELVL-ESPSEVTCLKFCPF--DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS 284 (555)
T ss_pred ceEEEEecCCCC--------------CceEEE-ecCCceeEEEeccC--CcceEEeeccCceEEEEEccCCCCCCCcccc
Confidence 479999998642 122222 23478999999994 668899999999999999987654 2 2
Q ss_pred EEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEE
Q 000654 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1371)
Q Consensus 172 ~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~ 251 (1371)
.....+...+..+.+..... ..-+++++.||.|..|+++.-.. | ....... .......
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~-~~~f~s~ssDG~i~~W~~~~l~~-P-----~e~~~~~---------------~~~~~~~ 342 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEH-NTEFFSLSSDGSICSWDTDMLSL-P-----VEGLLLE---------------SKKHKGQ 342 (555)
T ss_pred cccccCCcCeEEEEEeccCC-CCceEEEecCCcEeeeecccccc-c-----hhhcccc---------------ccccccc
Confidence 22233444555555544333 36789999999999998771110 0 0000000 0000000
Q ss_pred EecccCCEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC---CEEEEEeCC
Q 000654 252 LVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGED 327 (1371)
Q Consensus 252 l~gH~~~I~~v~~sp-dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~---~~L~Sgs~D 327 (1371)
-..-...+++++|.+ +-..++.|+++|.|.--+-...+.......+.. .....|.+.|.++.++| ..+++++ |
T Consensus 343 ~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~--~~~~~h~g~v~~v~~nPF~~k~fls~g-D 419 (555)
T KOG1587|consen 343 QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH--STFITHIGPVYAVSRNPFYPKNFLSVG-D 419 (555)
T ss_pred ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc--ccccccCcceEeeecCCCccceeeeec-c
Confidence 011234678899988 456789999999987744333222100001111 26677899999999983 6666666 9
Q ss_pred CeEEEEeC--CCcEEEEEeeccCcCEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEee
Q 000654 328 CTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIK 404 (1371)
Q Consensus 328 g~I~VWd~--~g~~l~~l~~h~~~~V~sl~~spdg~-~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~ 404 (1371)
-+++||.- ...++..+..+.. .|++++|||-.. .++++..||.+.+||+.... ..++....
T Consensus 420 W~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~---------------~~Pv~s~~ 483 (555)
T KOG1587|consen 420 WTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD---------------EEPVLSQK 483 (555)
T ss_pred ceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccc---------------cCCccccc
Confidence 99999997 4667777777777 599999999765 77888889999999994211 11111111
Q ss_pred ecCCccceeeccCCCccEEEEEEecCCcEEEEE-cCCcEEEEEee
Q 000654 405 IPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKLC 448 (1371)
Q Consensus 405 ~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t-~~G~i~~~~l~ 448 (1371)
-.......+.|++++++++++ ..|.++.+++.
T Consensus 484 ------------~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 484 ------------VCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ------------ccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 113456677788888877766 46877776664
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.29 E-value=5.8e-10 Score=138.31 Aligned_cols=269 Identities=15% Similarity=0.140 Sum_probs=171.9
Q ss_pred EECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeee
Q 000654 49 YDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (1371)
Q Consensus 49 wd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~ 127 (1371)
|++ .|.+++.+..|.. .|..++.+. +++ .++++++ ||+|++|++..-..... ..+...+
T Consensus 1034 W~p-~G~lVAhL~Ehs~-~v~k~a~s~------~~~----s~FvsgS~DGtVKvW~~~k~~~~~~--------s~rS~lt 1093 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSS-AVIKLAVSS------EHT----SLFVSGSDDGTVKVWNLRKLEGEGG--------SARSELT 1093 (1431)
T ss_pred CCc-cceEeehhhhccc-cccceeecC------CCC----ceEEEecCCceEEEeeehhhhcCcc--------eeeeeEE
Confidence 554 5788888888777 577888771 343 4666666 89999999975321100 1233334
Q ss_pred ccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC--eE-----EEEEecCCcceEEEEEeeccCCCCcEEEEEe
Q 000654 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SI-----ILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1371)
Q Consensus 128 l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~--~~-----~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs 200 (1371)
+..-...+.++...+ .++.+|+++.||.|++.++..- .. ...........+.++...........|+.++
T Consensus 1094 ys~~~sr~~~vt~~~---~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1094 YSPEGSRVEKVTMCG---NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred EeccCCceEEEEecc---CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEE
Confidence 443457888999888 8999999999999999998652 11 1111122222233332211112224788899
Q ss_pred CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcE
Q 000654 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1371)
Q Consensus 201 ~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~V 280 (1371)
..+.|..||.+..+ .+|.. ...--.+.|++++.+|.+.++++|...|.+
T Consensus 1171 ~~~~iv~~D~r~~~-----------------------~~w~l--------k~~~~hG~vTSi~idp~~~WlviGts~G~l 1219 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRH-----------------------DAWRL--------KNQLRHGLVTSIVIDPWCNWLVIGTSRGQL 1219 (1431)
T ss_pred eccceEEecchhhh-----------------------hHHhh--------hcCccccceeEEEecCCceEEEEecCCceE
Confidence 99999999998211 11111 112234889999999999999999999999
Q ss_pred EEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---C--CEEEEEeC--CCeEEEEeC-CCcEEEEEeeccC----
Q 000654 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---D--SFIITAGE--DCTCRVWGS-DGKQLKMIKEHIG---- 348 (1371)
Q Consensus 281 riWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~--~~L~Sgs~--Dg~I~VWd~-~g~~l~~l~~h~~---- 348 (1371)
-+||++-+... . .-..++..+|..+..+ + ...++++. .+-+-+|++ +|.+...+..-.+
T Consensus 1220 ~lWDLRF~~~i-----~----sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~l 1290 (1431)
T KOG1240|consen 1220 VLWDLRFRVPI-----L----SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPIL 1290 (1431)
T ss_pred EEEEeecCcee-----e----cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcch
Confidence 99999876441 1 1234455666666655 3 56666654 667999999 6644444332200
Q ss_pred --------------cCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 000654 349 --------------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1371)
Q Consensus 349 --------------~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~ 380 (1371)
-......+...+..++|||.|..||.||....
T Consensus 1291 s~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1291 SYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred hhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 01122333444568999999999999999543
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.26 E-value=8.4e-10 Score=119.57 Aligned_cols=259 Identities=12% Similarity=0.098 Sum_probs=169.4
Q ss_pred EEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEE
Q 000654 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (1371)
Q Consensus 181 v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~ 260 (1371)
+++.++ +.|...+|.+....+|.||.... ....++.+++..|...|+
T Consensus 13 itchAw---n~drt~iAv~~~~~evhiy~~~~------------------------------~~~w~~~htls~Hd~~vt 59 (361)
T KOG1523|consen 13 ITCHAW---NSDRTQIAVSPNNHEVHIYSMLG------------------------------ADLWEPAHTLSEHDKIVT 59 (361)
T ss_pred eeeeee---cCCCceEEeccCCceEEEEEecC------------------------------CCCceeceehhhhCccee
Confidence 455554 88999999999999999999871 112567889999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeCCCc
Q 000654 261 RIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGK 338 (1371)
Q Consensus 261 ~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~g~ 338 (1371)
.|.|+|..+.|++|+.|+..++|....+.. ..+. ..+..+....+++.|+ .+.|++|+.-..|.||-++++
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~-----Wkpt--lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGT-----WKPT--LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCe-----eccc--eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence 999999999999999999999999854332 2222 2777889999999999 589999999999999998554
Q ss_pred EEEEE-----eeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCcccee
Q 000654 339 QLKMI-----KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (1371)
Q Consensus 339 ~l~~l-----~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~ 413 (1371)
.---. +.+.. .|++++|+|++-+|++|+.|+..|++..--+.+.+.+... .+....|-. ....
T Consensus 133 NdWWVsKhikkPirS-tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~----------pWgsk~PFG-~lm~ 200 (361)
T KOG1523|consen 133 NDWWVSKHIKKPIRS-TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPT----------PWGSKMPFG-QLMS 200 (361)
T ss_pred cceehhhhhCCcccc-ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCC----------CCccCCcHH-HHHH
Confidence 32211 22334 5999999999999999999999999987222111111110 000000100 1111
Q ss_pred eccCCCccEEEEEEecCCcEEEEE-cCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCC--CCCCCCCCCEEEEE
Q 000654 414 LTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE--PKYPCGIDDWVALG 490 (1371)
Q Consensus 414 ~~~~~~~~V~~lafs~d~~llv~t-~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~--~~~s~~~~~lla~g 490 (1371)
.+....+.++.+.|+|+|..|+.. .++.+...+-..... .-..+... .-+..++...... .........++++.
T Consensus 201 E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~-~v~~~~~~--~lP~ls~~~ise~~vv~ag~~c~P~lf~~ 277 (361)
T KOG1523|consen 201 EASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE-RVQSVATA--QLPLLSVSWISENSVVAAGYDCGPVLFVT 277 (361)
T ss_pred hhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch-hccchhhc--cCCceeeEeecCCceeecCCCCCceEEEe
Confidence 222456789999999999877765 455555433222210 00011111 1333333333222 11222335788888
Q ss_pred eCCC
Q 000654 491 DGKG 494 (1371)
Q Consensus 491 s~dG 494 (1371)
+++|
T Consensus 278 ~~~~ 281 (361)
T KOG1523|consen 278 DEEG 281 (361)
T ss_pred cccc
Confidence 8886
No 208
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=3.9e-11 Score=135.80 Aligned_cols=311 Identities=16% Similarity=0.161 Sum_probs=212.5
Q ss_pred eeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEe
Q 000654 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1371)
Q Consensus 121 ~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs 200 (1371)
++.+...|.+|.+-|..|.|+. .|..|++|+.|..|.+||...++....+...+...++...|++++. ...+++.+
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~-d~ti~~~s 206 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSG-DRTIVTSS 206 (559)
T ss_pred HhhhhhcccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCC-CcCceecc
Confidence 4566778899999999999998 9999999999999999999999999888888877788888887764 45788899
Q ss_pred CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC-CEEEEEeCCCc
Q 000654 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRS 279 (1371)
Q Consensus 201 ~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg-~~LaS~s~Dg~ 279 (1371)
.||++++=.+.. .........+..|.++|..++.-|+. ..|.|++.|+.
T Consensus 207 ~dgqvr~s~i~~------------------------------t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~ 256 (559)
T KOG1334|consen 207 RDGQVRVSEILE------------------------------TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV 256 (559)
T ss_pred ccCceeeeeecc------------------------------ccceecceecccccCccceeeecCCCCCcccccccccc
Confidence 999999877651 00122245567899999999999976 46899999999
Q ss_pred EEEEEccCCcccCCCCceeeeceEeecCCc---cEEEEEEc---CCEEEEEeCCCeEEEEeC---CCc----EEEEEeec
Q 000654 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWDCCLT---DSFIITAGEDCTCRVWGS---DGK----QLKMIKEH 346 (1371)
Q Consensus 280 VriWdl~~~~~~~~~~~~~~~~~~~~gh~~---~I~~l~~s---~~~L~Sgs~Dg~I~VWd~---~g~----~l~~l~~h 346 (1371)
+.-.|++..... ..+ .....+.. ...+++.. ...+++++.|..+++||. ..+ .+..+-.|
T Consensus 257 v~~~Dlr~~~pa-----~~~--~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~ 329 (559)
T KOG1334|consen 257 VFHIDLRQDVPA-----EKF--VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH 329 (559)
T ss_pred eeeeeeccCCcc-----cee--eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc
Confidence 999999886542 111 12222333 45677776 368999999999999997 111 23333222
Q ss_pred c-----CcCEEEEEEcCCCCEEEEEECCCcEEEEEcC---CCCcccccCCCccccccCCccEEEeeecCCccceeeccCC
Q 000654 347 I-----GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ---AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSK 418 (1371)
Q Consensus 347 ~-----~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~---~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~ 418 (1371)
+ .-.|++++|+.++.-|++.-.|-.|.++.-. +..+-... |...-.-..+.+|
T Consensus 330 hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s-------------------~~~~~~k~vYKGH 390 (559)
T KOG1334|consen 330 HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSS-------------------PREQYVKRVYKGH 390 (559)
T ss_pred cccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCc-------------------chhhccchhhccc
Confidence 1 1259999999887777777778888888542 11100000 0000000113344
Q ss_pred C--ccEEEEEEec-CCcEEEEEc-CCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCC
Q 000654 419 S--EYVRCLHLTS-EDTLYIATN-HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKG 494 (1371)
Q Consensus 419 ~--~~V~~lafs~-d~~llv~t~-~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG 494 (1371)
. ..|+.+-|.. ...++++++ .|.|+ +|+.......+++.+... -+.|++- -|.-.+||+.+-|.
T Consensus 391 rN~~TVKgVNFfGPrsEyVvSGSDCGhIF---iW~K~t~eii~~MegDr~-VVNCLEp--------HP~~PvLAsSGid~ 458 (559)
T KOG1334|consen 391 RNSRTVKGVNFFGPRSEYVVSGSDCGHIF---IWDKKTGEIIRFMEGDRH-VVNCLEP--------HPHLPVLASSGIDH 458 (559)
T ss_pred ccccccceeeeccCccceEEecCccceEE---EEecchhHHHHHhhcccc-eEeccCC--------CCCCchhhccCCcc
Confidence 3 4588887764 446666654 58787 455544433334444433 5555544 24567899999999
Q ss_pred cEEEEEEcC
Q 000654 495 NMTIVRVVG 503 (1371)
Q Consensus 495 ~I~iwdi~~ 503 (1371)
.|+||...+
T Consensus 459 DVKIWTP~~ 467 (559)
T KOG1334|consen 459 DVKIWTPLT 467 (559)
T ss_pred ceeeecCCc
Confidence 999998743
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.24 E-value=5.2e-10 Score=128.08 Aligned_cols=244 Identities=16% Similarity=0.151 Sum_probs=155.8
Q ss_pred CCCCEEEEEeCCcEEEEECCCCeEEEEE---EeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCC
Q 000654 33 SSLPFLLAGSGSQVLLYDLEAGTLIRPF---QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELS 109 (1371)
Q Consensus 33 ~~~~llaaG~dg~I~Iwd~~sg~~l~~~---~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~ 109 (1371)
..+.+|.--.+..+.+|+...+..+..- ..+.+..-.+=+|... ...|++ --+++.++-|.|.+.|.....
T Consensus 133 ~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~--~a~~~g---~dllIGf~tGqvq~idp~~~~- 206 (636)
T KOG2394|consen 133 GKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSF--TATPKG---LDLLIGFTTGQVQLIDPINFE- 206 (636)
T ss_pred CCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceeccccc--ccCCCC---cceEEeeccCceEEecchhhH-
Confidence 3456666666788999988754322110 0112112222233211 122555 257888888999998876421
Q ss_pred CCCCCCCccceeeeeeeec--cCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEee
Q 000654 110 PNSQYQPETCVNLSLVQSL--PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLW 187 (1371)
Q Consensus 110 ~~~~~~~~~~v~~~~~~~l--~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~ 187 (1371)
...+... .-....|+++.|.| .+...++.+-.+|.+.+||.. +.+......+.+
T Consensus 207 ------------~sklfne~r~i~ktsvT~ikWvp--g~~~~Fl~a~~sGnlyly~~~-------~~~~~t~p~~~~--- 262 (636)
T KOG2394|consen 207 ------------VSKLFNEERLINKSSVTCIKWVP--GSDSLFLVAHASGNLYLYDKE-------IVCGATAPSYQA--- 262 (636)
T ss_pred ------------HHHhhhhcccccccceEEEEEEe--CCCceEEEEEecCceEEeecc-------ccccCCCCcccc---
Confidence 1110000 11236899999999 244556667789999999872 122222222221
Q ss_pred ccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCC
Q 000654 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (1371)
Q Consensus 188 ~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spd 267 (1371)
-+++..++.. .|... ....++..+.--++.|...+|+||
T Consensus 263 --~k~~~~f~i~-------t~ksk--------------------------------~~rNPv~~w~~~~g~in~f~FS~D 301 (636)
T KOG2394|consen 263 --LKDGDQFAIL-------TSKSK--------------------------------KTRNPVARWHIGEGSINEFAFSPD 301 (636)
T ss_pred --cCCCCeeEEe-------eeecc--------------------------------ccCCccceeEeccccccceeEcCC
Confidence 1233333332 22222 122344444445668999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEe
Q 000654 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1371)
Q Consensus 268 g~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~ 344 (1371)
|++||+.|.||.+||+|+.+... .. .....-+...|++|+ +++|++|++|--|.||.+ +.+.+..-.
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~eL-----lg-----~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQEL-----LG-----VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred CceEEEEecCceEEEeeccHHHH-----HH-----HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 99999999999999999998654 11 334445678999999 689999999999999999 888899999
Q ss_pred eccCcCEEEEEEcC
Q 000654 345 EHIGRGIWRCLYDS 358 (1371)
Q Consensus 345 ~h~~~~V~sl~~sp 358 (1371)
+|+. .|..++|+|
T Consensus 372 GHkS-WVs~VaFDp 384 (636)
T KOG2394|consen 372 GHKS-WVSVVAFDP 384 (636)
T ss_pred cccc-ceeeEeecc
Confidence 9999 699999983
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.23 E-value=2.4e-08 Score=108.58 Aligned_cols=293 Identities=16% Similarity=0.180 Sum_probs=173.5
Q ss_pred cEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCC--cEEEEEEEeec
Q 000654 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH--WVFDVCFLKVC 144 (1371)
Q Consensus 67 ~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~--~I~~v~fsp~~ 144 (1371)
....++|. .|. .-++++-+.-.+||+++.-. .......+.+ .+..+-|
T Consensus 7 ~~lsvs~N-------QD~----ScFava~~~Gfriyn~~P~k---------------e~~~r~~~~~G~~~veMLf---- 56 (346)
T KOG2111|consen 7 KTLSVSFN-------QDH----SCFAVATDTGFRIYNCDPFK---------------ESASRQFIDGGFKIVEMLF---- 56 (346)
T ss_pred ceeEEEEc-------cCC----ceEEEEecCceEEEecCchh---------------hhhhhccccCchhhhhHhh----
Confidence 34457787 664 57888888999999987411 1111111111 1111222
Q ss_pred CCCcEEEE-EEC------CCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccc
Q 000654 145 NGNRSLAI-GCS------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1371)
Q Consensus 145 ~dg~~Lat-gs~------Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~ 217 (1371)
..++||. |+. -+.|.|||=...+++.++.-. ..+.++.+ ....|++.- .+.|.||....
T Consensus 57 -R~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~--~~I~~V~l-----~r~riVvvl-~~~I~VytF~~----- 122 (346)
T KOG2111|consen 57 -RSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFN--SEIKAVKL-----RRDRIVVVL-ENKIYVYTFPD----- 122 (346)
T ss_pred -hhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEec--cceeeEEE-----cCCeEEEEe-cCeEEEEEcCC-----
Confidence 1233433 333 357999997667776665432 23445555 233455443 68899998861
Q ss_pred cCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecc--cCCEEEEEEcCCCCEEEE-EeCCCcEEEEEccCCcccCCC
Q 000654 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH--EGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKDSD 294 (1371)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH--~~~I~~v~~spdg~~LaS-~s~Dg~VriWdl~~~~~~~~~ 294 (1371)
..+.++.+..- ...+.++.-..+..+||. |-.-|.|+|-|+......
T Consensus 123 ---------------------------n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~--- 172 (346)
T KOG2111|consen 123 ---------------------------NPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN--- 172 (346)
T ss_pred ---------------------------ChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC---
Confidence 11222222211 111222222223334444 334689999999875431
Q ss_pred CceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCe-EEEEeC-CCcEEEEEeec-cCcCEEEEEEcCCCCEEEEEECC
Q 000654 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT-CRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFD 369 (1371)
Q Consensus 295 ~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~-I~VWd~-~g~~l~~l~~h-~~~~V~sl~~spdg~~L~Tgg~D 369 (1371)
.+.....|...|.|++.+ |..+||||..|+ |||||. +|..+..++.- ....|.+++|+|++.+|+..++-
T Consensus 173 -----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 173 -----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred -----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 114788999999999998 799999999998 799999 89999888642 22259999999999999999999
Q ss_pred CcEEEEEcCCCCcccccCCCccccc---------cCCccEEEeeecCCccceeeccCCCccEEEEEEecC-CcEEEEEcC
Q 000654 370 SAIKVHQFQAFLPGSLESHPEAKEF---------NGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE-DTLYIATNH 439 (1371)
Q Consensus 370 g~I~lwdl~~~~~~~l~~~~~~~~~---------~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d-~~llv~t~~ 439 (1371)
|+++++.+.......- .+ .+..+ ...-.+..+..| .+....++|-.+ ..+++...+
T Consensus 248 gTlHiF~l~~~~~~~~-~~-SSl~~~~~~lpky~~S~wS~~~f~l~------------~~~~~~~~fg~~~nsvi~i~~D 313 (346)
T KOG2111|consen 248 GTLHIFSLRDTENTED-ES-SSLSFKRLVLPKYFSSEWSFAKFQLP------------QGTQCIIAFGSETNTVIAICAD 313 (346)
T ss_pred CeEEEEEeecCCCCcc-cc-ccccccccccchhcccceeEEEEEcc------------CCCcEEEEecCCCCeEEEEEeC
Confidence 9999999954221111 00 00000 000001111111 234556677776 567777778
Q ss_pred CcEEEEEeecCCC
Q 000654 440 GYLYHTKLCDMDS 452 (1371)
Q Consensus 440 G~i~~~~l~~~~~ 452 (1371)
|..+.+.+.....
T Consensus 314 gsy~k~~f~~~~~ 326 (346)
T KOG2111|consen 314 GSYYKFKFDPKNG 326 (346)
T ss_pred CcEEEEEeccccc
Confidence 8888777655433
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.1e-10 Score=133.17 Aligned_cols=228 Identities=15% Similarity=0.175 Sum_probs=163.4
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeC
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~ 201 (1371)
+.+.+.|.||++-|++++|+. +|.+|++|+.|-.+.|||.-..+.+..+...+...++++.|.+.. +..++++|..
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t-nnriv~sgAg 115 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT-NNRIVLSGAG 115 (758)
T ss_pred cchhhhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC-CCeEEEeccC
Confidence 456678899999999999999 999999999999999999999999999988888899999998865 4568999999
Q ss_pred CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC-CEEEEEeCCCcE
Q 000654 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSA 280 (1371)
Q Consensus 202 dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg-~~LaS~s~Dg~V 280 (1371)
|..|+++|+...+ +.+.+++ .....+.+..|...|..|+-.|++ ..+-++++||+|
T Consensus 116 Dk~i~lfdl~~~~--------------~~~~d~~---------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti 172 (758)
T KOG1310|consen 116 DKLIKLFDLDSSK--------------EGGMDHG---------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI 172 (758)
T ss_pred cceEEEEeccccc--------------ccccccC---------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcce
Confidence 9999999998211 1111111 233455667899999999999998 688999999999
Q ss_pred EEEEccCCcccC--CCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeC---------CCc--------
Q 000654 281 RIWEVRAEYWKD--SDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---------DGK-------- 338 (1371)
Q Consensus 281 riWdl~~~~~~~--~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~---------~g~-------- 338 (1371)
|-+|++....-. ..+...+ ....+.--...++..+ +.+|+.|+.|-..++||. ++.
T Consensus 173 rQyDiREph~c~p~~~~~~~l--~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~ 250 (758)
T KOG1310|consen 173 RQYDIREPHVCNPDEDCPSIL--VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKD 250 (758)
T ss_pred eeecccCCccCCccccccHHH--HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcc
Confidence 999998743210 0011100 0111222345677776 579999999999999993 111
Q ss_pred --EEEEEe-ecc--------C--cCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 339 --QLKMIK-EHI--------G--RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 339 --~l~~l~-~h~--------~--~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
++..+. +|- . ..++-++|+|+|.-|+..-..-.|.++++.
T Consensus 251 ~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 251 CRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred cchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 122221 121 0 125667899998754443333478999984
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.7e-09 Score=132.43 Aligned_cols=215 Identities=12% Similarity=0.082 Sum_probs=142.7
Q ss_pred CeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECC---CcEEEEECCCCeE--EE
Q 000654 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSI--IL 171 (1371)
Q Consensus 97 ~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~D---g~I~vWd~~~~~~--~~ 171 (1371)
..|.+||.+.. ....+..|...+...+|+| +|+.|+..+.+ ..|.+||+.+++. +.
T Consensus 184 ~~i~i~d~dg~----------------~~~~lt~~~~~v~~p~wSP---DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~ 244 (429)
T PRK01742 184 YEVRVADYDGF----------------NQFIVNRSSQPLMSPAWSP---DGSKLAYVSFENKKSQLVVHDLRSGARKVVA 244 (429)
T ss_pred EEEEEECCCCC----------------CceEeccCCCccccceEcC---CCCEEEEEEecCCCcEEEEEeCCCCceEEEe
Confidence 57888887631 1234557778899999999 99999887653 3699999988754 22
Q ss_pred EEecCCcceEEEEEeeccCCCCcEEEEE-eCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEE
Q 000654 172 EVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1371)
Q Consensus 172 ~l~~~~~~~v~s~~~~~~s~d~~~Lasg-s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~ 250 (1371)
.+..+. ....| +||+..|+.+ ..+|.+.||.+.. ......
T Consensus 245 ~~~g~~----~~~~w---SPDG~~La~~~~~~g~~~Iy~~d~--------------------------------~~~~~~ 285 (429)
T PRK01742 245 SFRGHN----GAPAF---SPDGSRLAFASSKDGVLNIYVMGA--------------------------------NGGTPS 285 (429)
T ss_pred cCCCcc----CceeE---CCCCCEEEEEEecCCcEEEEEEEC--------------------------------CCCCeE
Confidence 222222 23444 8899888775 4688777775540 111234
Q ss_pred EEecccCCEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCC
Q 000654 251 RLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1371)
Q Consensus 251 ~l~gH~~~I~~v~~spdg~~LaS~s-~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~D 327 (1371)
.+..+...+....|+|||+.|+.++ .++..+||++...... . ...++.. ....|+ +++|+..+.+
T Consensus 286 ~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~----~------~~l~~~~--~~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 286 QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG----A------SLVGGRG--YSAQISADGKTLVMINGD 353 (429)
T ss_pred eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----e------EEecCCC--CCccCCCCCCEEEEEcCC
Confidence 5566777788999999999877665 5788999987653221 1 1123333 346676 5788777776
Q ss_pred CeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc---CCCCcccc
Q 000654 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF---QAFLPGSL 385 (1371)
Q Consensus 328 g~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl---~~~~~~~l 385 (1371)
+ +.+||+ +++.......+ ...++.|+|||++|+.++.++...+|.+ ++...+.+
T Consensus 354 ~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 354 N-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred C-EEEEECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 5 556998 55543322222 2457889999999999999998888875 44444444
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=4.5e-10 Score=126.24 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=138.7
Q ss_pred EEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeE
Q 000654 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (1371)
Q Consensus 21 tavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV 99 (1371)
-+++|+ ++ +..|++|. ||++|||++.+-..+.....|++ .|.++.|+ ||| .+|++-+....
T Consensus 148 k~vaf~--~~----gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-eV~DL~FS-------~dg----k~lasig~d~~ 209 (398)
T KOG0771|consen 148 KVVAFN--GD----GSKLATGGTDGTLRVWEWPSMLTILEEIAHHA-EVKDLDFS-------PDG----KFLASIGADSA 209 (398)
T ss_pred eEEEEc--CC----CCEeeeccccceEEEEecCcchhhhhhHhhcC-ccccceeC-------CCC----cEEEEecCCce
Confidence 689999 77 78999986 89999999888777777776776 79999999 999 57777664499
Q ss_pred EEEEeccCCCCCCCCCCccceeeeeeeec--cCCCCcEEEEEEEeecCCC---c--EEEEEECCCcEEEEECCCCeE---
Q 000654 100 KLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVFDVCFLKVCNGN---R--SLAIGCSDNSIRVWDISNSSI--- 169 (1371)
Q Consensus 100 ~vwdl~~~~~~~~~~~~~~~v~~~~~~~l--~gh~~~I~~v~fsp~~~dg---~--~Latgs~Dg~I~vWd~~~~~~--- 169 (1371)
+||+.+++. .++.. ..-....-.+.|+. ++ . .++.....+.|+.||+.....
T Consensus 210 ~VW~~~~g~---------------~~a~~t~~~k~~~~~~cRF~~---d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~ 271 (398)
T KOG0771|consen 210 RVWSVNTGA---------------ALARKTPFSKDEMFSSCRFSV---DNAQETLRLAASQFPGGGVRLCDISLWSGSNF 271 (398)
T ss_pred EEEEeccCc---------------hhhhcCCcccchhhhhceecc---cCCCceEEEEEecCCCCceeEEEeeeeccccc
Confidence 999998742 11111 12223455677776 44 2 223334456677776643221
Q ss_pred EEEEe-cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceee
Q 000654 170 ILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1371)
Q Consensus 170 ~~~l~-~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1371)
+...+ ......+.++++ +++|.+++.|+.||.|.|++.. +.+.
T Consensus 272 l~~~~~~~~~~siSsl~V---S~dGkf~AlGT~dGsVai~~~~---------------------------------~lq~ 315 (398)
T KOG0771|consen 272 LRLRKKIKRFKSISSLAV---SDDGKFLALGTMDGSVAIYDAK---------------------------------SLQR 315 (398)
T ss_pred cchhhhhhccCcceeEEE---cCCCcEEEEeccCCcEEEEEec---------------------------------eeee
Confidence 11111 111123556666 8999999999999999999987 3444
Q ss_pred EEEE-ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000654 249 LFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1371)
Q Consensus 249 ~~~l-~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~ 287 (1371)
++.. ..|...|+.+.|+||.+++++.+.|..+.+..+..
T Consensus 316 ~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 316 LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 4333 47999999999999999999999999999988765
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.11 E-value=5.8e-08 Score=105.64 Aligned_cols=237 Identities=13% Similarity=0.173 Sum_probs=156.0
Q ss_pred ccEEEEeCCCCc------ccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECC-CCeEEEEEEeecCccEEEEEeecc
Q 000654 4 KDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLE-AGTLIRPFQVFHGIRLHGISCNFI 76 (1371)
Q Consensus 4 ~tV~iWdl~~~~------h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~-sg~~l~~~~~~~~~~I~~i~~s~~ 76 (1371)
+.|.|||=.... ...+|.+|.+. ++ .+++--.+.|.||... .-+.++.+..... -.|++..
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~--r~------riVvvl~~~I~VytF~~n~k~l~~~et~~N--PkGlC~~-- 142 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLR--RD------RIVVVLENKIYVYTFPDNPKLLHVIETRSN--PKGLCSL-- 142 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEc--CC------eEEEEecCeEEEEEcCCChhheeeeecccC--CCceEee--
Confidence 468999943333 67889999999 55 6777778999999987 4566666654221 2223222
Q ss_pred ccccCCCCcceeeEEEEEC--CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEE
Q 000654 77 NCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1371)
Q Consensus 77 ~~~~~pdg~~~~~~la~~g--d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs 154 (1371)
+|..+ ..+||.=| -|+|+|-|+.... ...-.....|...|.|++.+. +|..|||++
T Consensus 143 ----~~~~~--k~~LafPg~k~GqvQi~dL~~~~-------------~~~p~~I~AH~s~Iacv~Ln~---~Gt~vATaS 200 (346)
T KOG2111|consen 143 ----CPTSN--KSLLAFPGFKTGQVQIVDLASTK-------------PNAPSIINAHDSDIACVALNL---QGTLVATAS 200 (346)
T ss_pred ----cCCCC--ceEEEcCCCccceEEEEEhhhcC-------------cCCceEEEcccCceeEEEEcC---CccEEEEec
Confidence 12221 13444444 4899999997533 112345678999999999998 999999999
Q ss_pred CCCc-EEEEECCCCeEEEEEe-cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000654 155 SDNS-IRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1371)
Q Consensus 155 ~Dg~-I~vWd~~~~~~~~~l~-~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1371)
..|+ |||||..+|..+.++. +.....+|+++| +|+..+|++.+..|+|.|+.++....... ..+..
T Consensus 201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF---Sp~~s~LavsSdKgTlHiF~l~~~~~~~~---------~~SSl 268 (346)
T KOG2111|consen 201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF---SPNSSWLAVSSDKGTLHIFSLRDTENTED---------ESSSL 268 (346)
T ss_pred cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe---CCCccEEEEEcCCCeEEEEEeecCCCCcc---------ccccc
Confidence 9997 6899999999999887 455678999998 99999999999999999999983221111 00100
Q ss_pred CcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 000654 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1371)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~ 286 (1371)
......+-..-.+...+..+.--.+...-++|-.+.+.++..+.||+-+=+.+.
T Consensus 269 ~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 269 SFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred cccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 000000000001112233333346677788888776667777777876544443
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.1e-09 Score=123.14 Aligned_cols=194 Identities=18% Similarity=0.160 Sum_probs=136.4
Q ss_pred CCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEE
Q 000654 82 SVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (1371)
Q Consensus 82 pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~ 160 (1371)
++| ..+++++ ||++|||++.. ...+.....|...|.++.|+| ||+.|++-+.| ..+
T Consensus 154 ~~g----s~latgg~dg~lRv~~~Ps---------------~~t~l~e~~~~~eV~DL~FS~---dgk~lasig~d-~~~ 210 (398)
T KOG0771|consen 154 GDG----SKLATGGTDGTLRVWEWPS---------------MLTILEEIAHHAEVKDLDFSP---DGKFLASIGAD-SAR 210 (398)
T ss_pred CCC----CEeeeccccceEEEEecCc---------------chhhhhhHhhcCccccceeCC---CCcEEEEecCC-ceE
Confidence 676 6888877 99999999653 344455667889999999999 99999999999 899
Q ss_pred EEECCCCeEEEEEecCCcceEEE-EEeeccC-CCCcEEEE-EeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCccee
Q 000654 161 VWDISNSSIILEVHSPERCLLYS-MKLWGDN-LEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1371)
Q Consensus 161 vWd~~~~~~~~~l~~~~~~~v~s-~~~~~~s-~d~~~Las-gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i 237 (1371)
||+..++..+.......+...++ .+|..+. .+..++++ -..-+.|+.|++.
T Consensus 211 VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~-------------------------- 264 (398)
T KOG0771|consen 211 VWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS-------------------------- 264 (398)
T ss_pred EEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEee--------------------------
Confidence 99999997776665333333332 3332211 11223333 3344667777765
Q ss_pred eecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc
Q 000654 238 KLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (1371)
Q Consensus 238 ~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s 317 (1371)
+|... ..-+......-...|.+++.+++|++++.|+.||.|-|++....+. ++ .....|...|+.+.|+
T Consensus 265 -~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~-----~~----~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 265 -LWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR-----LQ----YVKEAHLGFVTGLTFS 333 (398)
T ss_pred -eeccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee-----eE----eehhhheeeeeeEEEc
Confidence 22221 1111112222335799999999999999999999999999987544 22 3557899999999999
Q ss_pred C--CEEEEEeCCCeEEEEeC
Q 000654 318 D--SFIITAGEDCTCRVWGS 335 (1371)
Q Consensus 318 ~--~~L~Sgs~Dg~I~VWd~ 335 (1371)
| +++++-+.|..+.|..+
T Consensus 334 Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 334 PDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CCcCcccccccCCceeEEEE
Confidence 5 67888888887777766
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=3.6e-09 Score=129.47 Aligned_cols=230 Identities=13% Similarity=0.073 Sum_probs=151.1
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC----CCeEEEEEeccCCCCCCCCCCccc
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPETC 119 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g----d~sV~vwdl~~~~~~~~~~~~~~~ 119 (1371)
..|.+||..... ...+..+.. .+...+|+ ||| ..|+..+ +..|.+||+..+.
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wS-------PDG----~~la~~s~~~~~~~i~i~dl~tg~----------- 239 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQ-PLMSPAWS-------PDG----SKLAYVSFENKKSQLVVHDLRSGA----------- 239 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCC-ccccceEc-------CCC----CEEEEEEecCCCcEEEEEeCCCCc-----------
Confidence 689999986544 344444443 78999999 998 3444432 2479999997533
Q ss_pred eeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEE-CCCcEEEE--ECCCCeEEEEEecCCcceEEEEEeeccCCCCcEE
Q 000654 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVW--DISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1371)
Q Consensus 120 v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs-~Dg~I~vW--d~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~L 196 (1371)
.+.+..+.+|. ..++|+| ||+.|+.++ .++.+.|| |+.++.. ..+..+ .....+..| +||+..|
T Consensus 240 --~~~l~~~~g~~---~~~~wSP---DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~-~~~~~~~~w---SpDG~~i 306 (429)
T PRK01742 240 --RKVVASFRGHN---GAPAFSP---DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSG-AGNNTEPSW---SPDGQSI 306 (429)
T ss_pred --eEEEecCCCcc---CceeECC---CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccC-CCCcCCEEE---CCCCCEE
Confidence 23444455543 3689999 999888765 57776655 6655543 334332 223444555 7888876
Q ss_pred EEE-eCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEe
Q 000654 197 ASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1371)
Q Consensus 197 asg-s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s 275 (1371)
+.. ..++...||++.. .......+ ++.. ....|+||+++|+..+
T Consensus 307 ~f~s~~~g~~~I~~~~~--------------------------------~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 307 LFTSDRSGSPQVYRMSA--------------------------------SGGGASLV-GGRG--YSAQISADGKTLVMIN 351 (429)
T ss_pred EEEECCCCCceEEEEEC--------------------------------CCCCeEEe-cCCC--CCccCCCCCCEEEEEc
Confidence 654 4678889998761 01111122 3433 4578999999998888
Q ss_pred CCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC---CCcEEEEEeeccCcC
Q 000654 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---DGKQLKMIKEHIGRG 350 (1371)
Q Consensus 276 ~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~---~g~~l~~l~~h~~~~ 350 (1371)
.++ +.+||+.++.. + .+..+ .....+.|+ +.+|+.++.++.+.+|.+ +|+.+..+..|.+ .
T Consensus 352 ~~~-i~~~Dl~~g~~------~-----~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g-~ 417 (429)
T PRK01742 352 GDN-VVKQDLTSGST------E-----VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG-Q 417 (429)
T ss_pred CCC-EEEEECCCCCe------E-----EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC-C
Confidence 765 55699887654 1 11111 123456677 578999999998888775 7888999988887 4
Q ss_pred EEEEEEcCC
Q 000654 351 IWRCLYDSL 359 (1371)
Q Consensus 351 V~sl~~spd 359 (1371)
+...+|+|-
T Consensus 418 ~~~p~wsp~ 426 (429)
T PRK01742 418 VKFPAWSPY 426 (429)
T ss_pred CCCcccCCC
Confidence 888999874
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=4.2e-08 Score=107.89 Aligned_cols=209 Identities=16% Similarity=0.191 Sum_probs=131.2
Q ss_pred CcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCC
Q 000654 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1371)
Q Consensus 18 ~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~ 97 (1371)
-++..++++ +- --.+.+++.|..|++||-.+ ++...++......|.+++|. |-+. ..++++-.+
T Consensus 99 ~dlr~~aWh--qH---~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawR-------Plsa---selavgCr~ 162 (445)
T KOG2139|consen 99 IDLRGVAWH--QH---IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWR-------PLSA---SELAVGCRA 162 (445)
T ss_pred cceeeEeec--hh---hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEec-------cCCc---ceeeeeecc
Confidence 346788888 53 01233444589999999776 44444443333369999999 7664 567777788
Q ss_pred eEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC-CCcEEEEECCCCeEEEEEecC
Q 000654 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSP 176 (1371)
Q Consensus 98 sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~-Dg~I~vWd~~~~~~~~~l~~~ 176 (1371)
-|.||..+....-......... .-..+...+|| .+|+++.|++ ||..|++++. |..|.|||..++..+.-....
T Consensus 163 gIciW~~s~tln~~r~~~~~s~-~~~qvl~~pgh-~pVtsmqwn~---dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g 237 (445)
T KOG2139|consen 163 GICIWSDSRTLNANRNIRMMST-HHLQVLQDPGH-NPVTSMQWNE---DGTILVTASFGSSSIMIWDPDTGQKIPLIPKG 237 (445)
T ss_pred eeEEEEcCcccccccccccccc-cchhheeCCCC-ceeeEEEEcC---CCCEEeecccCcceEEEEcCCCCCcccccccC
Confidence 8999998743210000000000 01123344566 7899999999 9999999875 678999999988765443211
Q ss_pred CcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEeccc
Q 000654 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1371)
Q Consensus 177 ~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~ 256 (1371)
.+. +.-+. ++||+.+|++++.|+..++|+... ..... +..--.
T Consensus 238 lgg-~slLk---wSPdgd~lfaAt~davfrlw~e~q--------------------------------~wt~e-rw~lgs 280 (445)
T KOG2139|consen 238 LGG-FSLLK---WSPDGDVLFAATCDAVFRLWQENQ--------------------------------SWTKE-RWILGS 280 (445)
T ss_pred CCc-eeeEE---EcCCCCEEEEecccceeeeehhcc--------------------------------cceec-ceeccC
Confidence 111 11233 399999999999999999997650 11111 111234
Q ss_pred CCEEEEEEcCCCCEEEE-EeCCCcEEEEEcc
Q 000654 257 GSIFRIEWSSCGSKLVS-VSDDRSARIWEVR 286 (1371)
Q Consensus 257 ~~I~~v~~spdg~~LaS-~s~Dg~VriWdl~ 286 (1371)
+.|....|+|+|.+|+- ++. .-+++.+.
T Consensus 281 grvqtacWspcGsfLLf~~sg--sp~lysl~ 309 (445)
T KOG2139|consen 281 GRVQTACWSPCGSFLLFACSG--SPRLYSLT 309 (445)
T ss_pred CceeeeeecCCCCEEEEEEcC--CceEEEEe
Confidence 58999999999987654 433 23444443
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=7.6e-09 Score=115.14 Aligned_cols=267 Identities=13% Similarity=0.132 Sum_probs=183.3
Q ss_pred cEEEEEEEecCCCCCCCCEEEEE-eCCcEEEEECCCCeEEEEE-----EeecCccEEEEEeeccccccCCCCcceeeEEE
Q 000654 19 EISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPF-----QVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1371)
Q Consensus 19 ~Vtavafs~~pd~~~~~~llaaG-~dg~I~Iwd~~sg~~l~~~-----~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la 92 (1371)
.|+.++|- -+ +....+... .+..+..+..+...+.... ......+|.+++.. || .+++
T Consensus 57 ris~l~~~--~d--~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--------dg----~Lit 120 (412)
T KOG3881|consen 57 RISSLLFG--VD--GETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--------DG----TLIT 120 (412)
T ss_pred hhhhheee--cC--CceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--------CC----EEEE
Confidence 46777776 44 334555555 3567777776655444332 11122356666554 44 6778
Q ss_pred EECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECC--CcEEEEECCCCeEE
Q 000654 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD--NSIRVWDISNSSII 170 (1371)
Q Consensus 93 ~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~D--g~I~vWd~~~~~~~ 170 (1371)
+.++|.+.+|....+.... ..+..+..+ ..+..+.-.| .....+|+|+.. +.+.+||++..+.+
T Consensus 121 c~~sG~l~~~~~k~~d~hs-----------s~l~~la~g-~g~~~~r~~~--~~p~Iva~GGke~~n~lkiwdle~~~qi 186 (412)
T KOG3881|consen 121 CVSSGNLQVRHDKSGDLHS-----------SKLIKLATG-PGLYDVRQTD--TDPYIVATGGKENINELKIWDLEQSKQI 186 (412)
T ss_pred EecCCcEEEEeccCCcccc-----------ccceeeecC-CceeeeccCC--CCCceEecCchhcccceeeeecccceee
Confidence 8889999999998543111 112222222 3455666555 234567779988 88999999988776
Q ss_pred EEEecCC--------cceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccc
Q 000654 171 LEVHSPE--------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1371)
Q Consensus 171 ~~l~~~~--------~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~ 242 (1371)
.+.+... ..+..++.|...++ ...||+++.-+++++||.+
T Consensus 187 w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~------------------------------- 234 (412)
T KOG3881|consen 187 WSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTR------------------------------- 234 (412)
T ss_pred eeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCc-------------------------------
Confidence 6655332 23344566654433 6789999999999999998
Q ss_pred ccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CE
Q 000654 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SF 320 (1371)
Q Consensus 243 ~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~ 320 (1371)
...+++..+.--+.+|.++...|+++++++|..-+.+..+|++.+... . ..+.+-.+.|.++..++ ++
T Consensus 235 -~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~-----g----~~~kg~tGsirsih~hp~~~~ 304 (412)
T KOG3881|consen 235 -HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL-----G----CGLKGITGSIRSIHCHPTHPV 304 (412)
T ss_pred -ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee-----c----cccCCccCCcceEEEcCCCce
Confidence 245667777777899999999999999999999999999999987652 1 24678889999999996 59
Q ss_pred EEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCC
Q 000654 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1371)
Q Consensus 321 L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spd 359 (1371)
++++|-|..+||+|+ +.+++.....-. .+++|.+.++
T Consensus 305 las~GLDRyvRIhD~ktrkll~kvYvKs--~lt~il~~~~ 342 (412)
T KOG3881|consen 305 LASCGLDRYVRIHDIKTRKLLHKVYVKS--RLTFILLRDD 342 (412)
T ss_pred EEeeccceeEEEeecccchhhhhhhhhc--cccEEEecCC
Confidence 999999999999999 545554433222 2667776554
No 219
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.5e-07 Score=112.07 Aligned_cols=162 Identities=14% Similarity=0.186 Sum_probs=109.8
Q ss_pred EEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccC---CCCcceeeEEEEEC-
Q 000654 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEG---SVSTRVTFEVALFG- 95 (1371)
Q Consensus 20 Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~---pdg~~~~~~la~~g- 95 (1371)
-.++.++ |. .++|-|+...|.+-|..+-+.+..+..|+. .|..+.|.+...... |.. ...+||++.
T Consensus 18 ~~A~Dw~--~~-----GLiAygshslV~VVDs~s~q~iqsie~h~s-~V~~VrWap~~~p~~llS~~~--~~lliAsaD~ 87 (1062)
T KOG1912|consen 18 RNAADWS--PS-----GLIAYGSHSLVSVVDSRSLQLIQSIELHQS-AVTSVRWAPAPSPRDLLSPSS--SQLLIASADI 87 (1062)
T ss_pred ccccccC--cc-----ceEEEecCceEEEEehhhhhhhhccccCcc-ceeEEEeccCCCchhccCccc--cceeEEeccc
Confidence 4566676 64 799999999999999999999999987775 899999997643221 121 123444444
Q ss_pred CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCC-cEEEEEECCCcEEEEECCCCeEEEEEe
Q 000654 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVH 174 (1371)
Q Consensus 96 d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg-~~Latgs~Dg~I~vWd~~~~~~~~~l~ 174 (1371)
.|.|.+||.... ..+..+..|.++|.+++|-|.-.+. ..|+.-..-.++.+|+..+|+.+-+..
T Consensus 88 ~GrIil~d~~~~---------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 88 SGRIILVDFVLA---------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred cCcEEEEEehhh---------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 599999999862 3344566788999999999843333 456666677899999999999877665
Q ss_pred cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEE
Q 000654 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (1371)
Q Consensus 175 ~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd 209 (1371)
.... ++.++.+-+++ ...+..-+..|.+.+-+
T Consensus 153 ys~~-iLs~f~~DPfd--~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 153 YSHE-ILSCFRVDPFD--SRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred cCCc-ceeeeeeCCCC--cceEEEEccCceEEEEe
Confidence 4433 34445554443 23333333345555544
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=9.7e-09 Score=114.29 Aligned_cols=254 Identities=14% Similarity=0.177 Sum_probs=170.7
Q ss_pred CccEEEEEeeccccccCCCCcceeeEEEEE-CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEee
Q 000654 65 GIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (1371)
Q Consensus 65 ~~~I~~i~~s~~~~~~~pdg~~~~~~la~~-gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~ 143 (1371)
..+|.+++|. .|++ ...+... .+..+..+.+...... + ....+........+|..++...
T Consensus 55 ~~ris~l~~~-------~d~~--tevl~~r~~~~~~~~~~~~E~~~~-----s----~~~~~~~~~l~~~~I~gl~~~d- 115 (412)
T KOG3881|consen 55 LDRISSLLFG-------VDGE--TEVLNARSADDDLPKFVIEEFEIS-----S----SLDDAKTVSLGTKSIKGLKLAD- 115 (412)
T ss_pred hhhhhhheee-------cCCc--eeEeeccccCcccccccccCCccc-----c----ccccccccccccccccchhhcC-
Confidence 3478888887 3332 1344444 5777777777643311 1 0112234445667788887653
Q ss_pred cCCCcEEEEEECCCcEEEEECCCCe----EEEEEecCCcceEEEEEeeccCCCCcEEEEEeCC--CeEEEEEcccCCccc
Q 000654 144 CNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNLEALRIASGTIY--NEIIVWKVDWEHVAP 217 (1371)
Q Consensus 144 ~~dg~~Latgs~Dg~I~vWd~~~~~----~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~d--g~I~vWd~~~~~~~~ 217 (1371)
..|++|-.+|.+.+|....+. .+..+..+ ..++.+.-. ..+..++++|+.. +.+.+||+...
T Consensus 116 ----g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g--~g~~~~r~~--~~~p~Iva~GGke~~n~lkiwdle~~---- 183 (412)
T KOG3881|consen 116 ----GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG--PGLYDVRQT--DTDPYIVATGGKENINELKIWDLEQS---- 183 (412)
T ss_pred ----CEEEEEecCCcEEEEeccCCccccccceeeecC--CceeeeccC--CCCCceEecCchhcccceeeeecccc----
Confidence 467788999999999997543 23333322 223344332 2344577779999 89999999822
Q ss_pred cCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCC--CCEEEEEeCCCcEEEEEccCCcccCCCC
Q 000654 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1371)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spd--g~~LaS~s~Dg~VriWdl~~~~~~~~~~ 295 (1371)
.++|....-..-...+ .-.-+++++.|.+. ...||+++.-+.||+||.+.++.+
T Consensus 184 -------------------~qiw~aKNvpnD~L~L-rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP---- 239 (412)
T KOG3881|consen 184 -------------------KQIWSAKNVPNDRLGL-RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP---- 239 (412)
T ss_pred -------------------eeeeeccCCCCccccc-eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc----
Confidence 2233211000000001 01246788999987 789999999999999999977653
Q ss_pred ceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEE-EeeccCcCEEEEEEcCCCCEEEEEECCCc
Q 000654 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1371)
Q Consensus 296 ~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~-l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~ 371 (1371)
+. .+.--+.+|+++... ++++++|..-+.+..||+ .++.+.. +++-.+ .|++|..+|..++|+++|-|..
T Consensus 240 V~-----~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 240 VA-----QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRY 313 (412)
T ss_pred ee-----EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC-CcceEEEcCCCceEEeecccee
Confidence 22 333345667777765 689999999999999999 6666655 788888 6999999999999999999999
Q ss_pred EEEEEcCC
Q 000654 372 IKVHQFQA 379 (1371)
Q Consensus 372 I~lwdl~~ 379 (1371)
+||+|++.
T Consensus 314 vRIhD~kt 321 (412)
T KOG3881|consen 314 VRIHDIKT 321 (412)
T ss_pred EEEeeccc
Confidence 99999964
No 221
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.04 E-value=2.8e-08 Score=107.75 Aligned_cols=341 Identities=13% Similarity=0.115 Sum_probs=203.6
Q ss_pred EEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE-CCCeEEE
Q 000654 23 LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKL 101 (1371)
Q Consensus 23 vafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~-gd~sV~v 101 (1371)
.+|| |+ ++++|+..+-.+.|=|.++-++++.+...+ +|.-|.|. .|. ...+.+. -++.|.+
T Consensus 14 c~fS--p~----g~yiAs~~~yrlviRd~~tlq~~qlf~cld--ki~yieW~-------ads---~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 14 CSFS--PC----GNYIASLSRYRLVIRDSETLQLHQLFLCLD--KIVYIEWK-------ADS---CHILCVAYKDPKVQV 75 (447)
T ss_pred eeEC--CC----CCeeeeeeeeEEEEeccchhhHHHHHHHHH--Hhhheeee-------ccc---eeeeeeeeccceEEE
Confidence 4788 98 899999998899999988877655554432 58888888 554 1344433 3789999
Q ss_pred EEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCc-EEEEEECCCcEEEEECCCCeEEEEEecCCcce
Q 000654 102 FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (1371)
Q Consensus 102 wdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~-~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~ 180 (1371)
|++...+ .-..+..-.+.+.+++|+| +|+ .|.+..-|-.|.+|.+.+.+.... +.+.. .
T Consensus 76 wsl~Qpe---------------w~ckIdeg~agls~~~WSP---dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~-~ 135 (447)
T KOG4497|consen 76 WSLVQPE---------------WYCKIDEGQAGLSSISWSP---DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKT-N 135 (447)
T ss_pred EEeecce---------------eEEEeccCCCcceeeeECC---CcceEeeeecceeEEEEEEeccceeEEe-ccccc-C
Confidence 9997532 3344555668899999999 885 555666688999999987665332 22222 2
Q ss_pred EEEEEeeccCCCCcEEEEEeCCCe---EEE-----EEcccC-CccccCCCCCCCCCCCCCCCcceeeecccccceeeEEE
Q 000654 181 LYSMKLWGDNLEALRIASGTIYNE---IIV-----WKVDWE-HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1371)
Q Consensus 181 v~s~~~~~~s~d~~~Lasgs~dg~---I~v-----Wd~~~~-~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~ 251 (1371)
+..++| .+++.+.+..+.... +.| |.+-.+ .........+..+ .++.-+.+|+..-..+.. .
T Consensus 136 ~kg~~f---~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs-----Pdg~~laVwd~~Leykv~-a 206 (447)
T KOG4497|consen 136 VKGYAF---HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS-----PDGNWLAVWDNVLEYKVY-A 206 (447)
T ss_pred ceeEEE---CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC-----CCCcEEEEecchhhheee-e
Confidence 244444 788888887765421 111 111000 0001011111111 144556677754333221 1
Q ss_pred EecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCccc----------------------------------------
Q 000654 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK---------------------------------------- 291 (1371)
Q Consensus 252 l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~---------------------------------------- 291 (1371)
+ .-.-.+..++|+|.+++|+.|+.|+.+|+-+.-+.+..
T Consensus 207 Y-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 207 Y-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred e-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 1 12246888999999999999999999998654332100
Q ss_pred -----CCCC----------ceeeec-eEeecCCccEEEEEEc-C-CEEEEEeCC--CeEEEEeCCCcEEEEEeeccCcCE
Q 000654 292 -----DSDS----------IEEVGS-SVLYGHNARVWDCCLT-D-SFIITAGED--CTCRVWGSDGKQLKMIKEHIGRGI 351 (1371)
Q Consensus 292 -----~~~~----------~~~~~~-~~~~gh~~~I~~l~~s-~-~~L~Sgs~D--g~I~VWd~~g~~l~~l~~h~~~~V 351 (1371)
.++. +..++| .......-.+--++|+ + .+++|-... ..+-+||+....+...-.... +|
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~-pi 364 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH-PI 364 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc-ce
Confidence 0000 000000 0111223346678888 3 344544322 468999995544444333334 69
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCC
Q 000654 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1371)
Q Consensus 352 ~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~ 431 (1371)
....|+|....|+.+.....+.+|...+. +.+..|. ..-.|..+.|.-+|
T Consensus 365 raf~WdP~~prL~vctg~srLY~W~psg~--------------------~~V~vP~----------~GF~i~~l~W~~~g 414 (447)
T KOG4497|consen 365 RAFEWDPGRPRLVVCTGKSRLYFWAPSGP--------------------RVVGVPK----------KGFNIQKLQWLQPG 414 (447)
T ss_pred eEEEeCCCCceEEEEcCCceEEEEcCCCc--------------------eEEecCC----------CCceeeeEEecCCC
Confidence 99999999888877777778999988652 1222222 12357888888888
Q ss_pred cEEEEEcCCcE
Q 000654 432 TLYIATNHGYL 442 (1371)
Q Consensus 432 ~llv~t~~G~i 442 (1371)
..++..+....
T Consensus 415 ~~i~l~~kDaf 425 (447)
T KOG4497|consen 415 EFIVLCGKDAF 425 (447)
T ss_pred cEEEEEcCCce
Confidence 77666554443
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=4.4e-08 Score=113.32 Aligned_cols=280 Identities=15% Similarity=0.147 Sum_probs=179.6
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEE-Ee-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLA-GS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaa-G~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
...-+.|..+ || |+|+++ |. -+.|++||+..-.+ .|..|-+..+..+.+.. .|- ...+...
T Consensus 51 p~ast~ik~s--~D----GqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLs------DD~---SK~v~L~ 113 (703)
T KOG2321|consen 51 PTASTRIKVS--PD----GQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILS------DDY---SKSVFLQ 113 (703)
T ss_pred ccccceeEec--CC----CcEEEEecccCCceEEEEccccee--eeeecccccceeEEEec------cch---hhheEee
Confidence 3445889999 99 777666 44 49999999976554 33333332344433330 221 1445555
Q ss_pred CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEe
Q 000654 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1371)
Q Consensus 95 gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~ 174 (1371)
.|++|.+..-.- . + .. +. + ...-.+++++.+ ... |++++....|.-++++.|+.+..+.
T Consensus 114 ~DR~IefHak~G-~----h--------y~-~R-I---P~~GRDm~y~~~--scD-ly~~gsg~evYRlNLEqGrfL~P~~ 172 (703)
T KOG2321|consen 114 NDRTIEFHAKYG-R----H--------YR-TR-I---PKFGRDMKYHKP--SCD-LYLVGSGSEVYRLNLEQGRFLNPFE 172 (703)
T ss_pred cCceeeehhhcC-e----e--------ee-ee-c---CcCCccccccCC--Ccc-EEEeecCcceEEEEccccccccccc
Confidence 677776543220 0 0 00 00 0 112235555541 333 4455556668888999999887776
Q ss_pred cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEec
Q 000654 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1371)
Q Consensus 175 ~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g 254 (1371)
....+ ++++.. ++...+|++|+.+|.|-.||.+........ .....+..
T Consensus 173 ~~~~~-lN~v~i---n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l---------------------------~~~~~v~s 221 (703)
T KOG2321|consen 173 TDSGE-LNVVSI---NEEHGLLACGTEDGVVEFWDPRDKSRVGTL---------------------------DAASSVNS 221 (703)
T ss_pred ccccc-ceeeee---cCccceEEecccCceEEEecchhhhhheee---------------------------ecccccCC
Confidence 54432 444444 566779999999999999999832211100 00011122
Q ss_pred cc-----CCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc----CCEEEEEe
Q 000654 255 HE-----GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAG 325 (1371)
Q Consensus 255 H~-----~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s----~~~L~Sgs 325 (1371)
|. ..|+++.|+.+|-.++.|..+|.|.|||+++.+.. . ..-.+...+|..+.|. .+.++|.
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-----~----~kdh~~e~pi~~l~~~~~~~q~~v~S~- 291 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-----L----VKDHGYELPIKKLDWQDTDQQNKVVSM- 291 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-----e----ecccCCccceeeecccccCCCceEEec-
Confidence 33 35999999999999999999999999999987651 1 1223345578888885 2455555
Q ss_pred CCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 326 ~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
....++|||- +|++...+..-.. +..+++-|++.+++++-.++.+..|-+
T Consensus 292 Dk~~~kiWd~~~Gk~~asiEpt~~--lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 292 DKRILKIWDECTGKPMASIEPTSD--LNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred chHHhhhcccccCCceeeccccCC--cCceeeecCCceEEEecCCCcceeEEc
Confidence 3567999999 8998888765554 889999999999999999888877766
No 223
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.03 E-value=1.6e-08 Score=110.62 Aligned_cols=241 Identities=16% Similarity=0.219 Sum_probs=164.9
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEEC-CCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDL-EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~-~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g 95 (1371)
.+.|++...- |- ...++-+..|.+++||-- .+++.=..+......++.++.+. ++.. .+++...
T Consensus 24 ~d~vn~~~l~--~~---e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~-------~e~~---~L~vg~~ 88 (404)
T KOG1409|consen 24 QDDVNAAILI--PK---EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV-------SESR---RLYVGQD 88 (404)
T ss_pred hhhhhhheec--cC---CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee-------ccce---EEEEEEe
Confidence 3445555544 43 123444455799999953 44554334443334478888888 6641 3333444
Q ss_pred CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEE--
Q 000654 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-- 173 (1371)
Q Consensus 96 d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l-- 173 (1371)
.+++.-+.+...-. +....+....|...|..+-|+. ....+++.+.|..+.---.+.+..+..+
T Consensus 89 ngtvtefs~sedfn-----------km~~~r~~~~h~~~v~~~if~~---~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 89 NGTVTEFALSEDFN-----------KMTFLKDYLAHQARVSAIVFSL---THEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred cceEEEEEhhhhhh-----------hcchhhhhhhhhcceeeEEecC---CceeEEEeccccceEEEeeccCCcccceEe
Confidence 79998888764220 1344555668999999999987 6788999998887654444444443222
Q ss_pred ecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe
Q 000654 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1371)
Q Consensus 174 ~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1371)
.....+..+.+ .+...|...|.|.+-.+. +....++.++.
T Consensus 155 ~~~~t~~~~d~---------~~~fvGd~~gqvt~lr~~-------------------------------~~~~~~i~~~~ 194 (404)
T KOG1409|consen 155 ETPASALQFDA---------LYAFVGDHSGQITMLKLE-------------------------------QNGCQLITTFN 194 (404)
T ss_pred eccCCCCceee---------EEEEecccccceEEEEEe-------------------------------ecCCceEEEEc
Confidence 22211111111 155667777777777665 12456788899
Q ss_pred cccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEE
Q 000654 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1371)
Q Consensus 254 gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~ 331 (1371)
+|.+.+.++.|.|....|.+|..|..|.+||+...+. .. ..+++|...|..+.+. -..++++++||.|.
T Consensus 195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-----~~----~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG-----TA----YELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc-----ee----eeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 9999999999999999999999999999999987654 12 4788999999888876 58999999999999
Q ss_pred EEeC
Q 000654 332 VWGS 335 (1371)
Q Consensus 332 VWd~ 335 (1371)
+|+.
T Consensus 266 ~w~m 269 (404)
T KOG1409|consen 266 VWNM 269 (404)
T ss_pred EEec
Confidence 9998
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=1.3e-07 Score=104.09 Aligned_cols=258 Identities=14% Similarity=0.177 Sum_probs=158.3
Q ss_pred cEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccC
Q 000654 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1371)
Q Consensus 134 ~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~ 213 (1371)
.+..++|++ .-..+|++..|-.|++||-.. +....++......+.++++-+.+. .-|+.|+ -+-|.+|.....
T Consensus 100 dlr~~aWhq---H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsa--selavgC-r~gIciW~~s~t 172 (445)
T KOG2139|consen 100 DLRGVAWHQ---HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSA--SELAVGC-RAGICIWSDSRT 172 (445)
T ss_pred ceeeEeech---hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCc--ceeeeee-cceeEEEEcCcc
Confidence 467888987 445678899999999999876 566667777666788888865543 3566666 466999987611
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC-CCcEEEEEccCCcccC
Q 000654 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKD 292 (1371)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-Dg~VriWdl~~~~~~~ 292 (1371)
-.. +..++. .......+....|| .+|++++|.+||..+++++. |..|+|||..++...
T Consensus 173 ln~-----------------~r~~~~--~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~- 231 (445)
T KOG2139|consen 173 LNA-----------------NRNIRM--MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI- 231 (445)
T ss_pred ccc-----------------cccccc--ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc-
Confidence 000 000000 00011223344566 78999999999999999874 678999999987651
Q ss_pred CCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CC-cEEEEEeeccCcCEEEEEEcCCCCEEEEEEC
Q 000654 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1371)
Q Consensus 293 ~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g-~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~ 368 (1371)
. ....-.+.+.-+.|+ +.+|+.+.-|+..++|+. .. ...+-. .-.+ .|....|+|+|++|+-...
T Consensus 232 ----p-----L~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsg-rvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 232 ----P-----LIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSG-RVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ----c-----ccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCC-ceeeeeecCCCCEEEEEEc
Confidence 1 112334568889998 589999999999999966 22 222222 2334 4999999999997654432
Q ss_pred CCcEEEEEc--CCCCcccccCCCccccccCCccEEEeeecCCccceeeccC---CCccEEEEEEecCCcEEEEEcCCc
Q 000654 369 DSAIKVHQF--QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS---KSEYVRCLHLTSEDTLYIATNHGY 441 (1371)
Q Consensus 369 Dg~I~lwdl--~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~---~~~~V~~lafs~d~~llv~t~~G~ 441 (1371)
|.-++|.+ .++...... . ..+..+..+.....+....+ --+.+.+++|.|.|.+++..-.|.
T Consensus 301 -gsp~lysl~f~~~~~~~~~-~---------~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 301 -GSPRLYSLTFDGEDSVFLR-P---------QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred -CCceEEEEeecCCCccccC-c---------ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 34456665 222111110 0 00001100000000000001 135789999999999888875544
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.01 E-value=9.3e-10 Score=124.14 Aligned_cols=190 Identities=15% Similarity=0.214 Sum_probs=151.0
Q ss_pred EEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCC
Q 000654 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1371)
Q Consensus 135 I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~ 214 (1371)
-..+.++. +|..|+.|+..|.|-.+|..+++...++..-+. +.++.|.. +..++ +....+.+.|||-.
T Consensus 132 PY~~~ytr---nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et--v~Dv~~LH---neq~~-AVAQK~y~yvYD~~--- 199 (545)
T KOG1272|consen 132 PYHLDYTR---NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET--VRDVTFLH---NEQFF-AVAQKKYVYVYDNN--- 199 (545)
T ss_pred CeeeeecC---CccEEEecCCccceeeeecccceeeeeeehhhh--hhhhhhhc---chHHH-HhhhhceEEEecCC---
Confidence 35677877 999999999999999999999998887764443 44555532 23334 44457788888865
Q ss_pred ccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCC
Q 000654 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (1371)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~ 294 (1371)
+..++.+..| ..|..+.|.|-.-+|++++..|.++.-|+..++.
T Consensus 200 -------------------------------GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl---- 243 (545)
T KOG1272|consen 200 -------------------------------GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL---- 243 (545)
T ss_pred -------------------------------CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhh----
Confidence 5566666655 5689999999999999999999999999999876
Q ss_pred CceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCc
Q 000654 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1371)
Q Consensus 295 ~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~ 371 (1371)
+. .+..-.+++..++-. ...+-+|...|+|.+|.. ..+++..+..|.+ +|.+|++.++|.|++|.|.|..
T Consensus 244 -Va-----~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 244 -VA-----SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRK 316 (545)
T ss_pred -hH-----HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccc
Confidence 22 334444556666655 367889999999999999 7788888889999 7999999999999999999999
Q ss_pred EEEEEcCC
Q 000654 372 IKVHQFQA 379 (1371)
Q Consensus 372 I~lwdl~~ 379 (1371)
++|||++.
T Consensus 317 ~kIWDlR~ 324 (545)
T KOG1272|consen 317 VKIWDLRN 324 (545)
T ss_pred eeEeeecc
Confidence 99999964
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.99 E-value=2.4e-07 Score=110.06 Aligned_cols=294 Identities=14% Similarity=0.118 Sum_probs=168.6
Q ss_pred CCccEEEEeCCCCcc------cCcE-EEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEe
Q 000654 2 GKKDLSEWRLDVGQY------LGEI-SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1371)
Q Consensus 2 ~D~tV~iWdl~~~~h------~~~V-tavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~ 73 (1371)
+++.|.|.|..+.+. .+.+ ..++|+ || ++++.+.+ |+.|.++|+.+.+.+++++.. ....++++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s--~D----gr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~ 85 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFS--PD----GRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAV 85 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-T--T-----SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEec--CC----CCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEE
Confidence 478899999988762 2333 446789 98 78777766 899999999999999999863 35799999
Q ss_pred eccccccCCCCcceeeEEEEE-CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccC-------CCCcEEEEEEEeecC
Q 000654 74 NFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCN 145 (1371)
Q Consensus 74 s~~~~~~~pdg~~~~~~la~~-gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~g-------h~~~I~~v~fsp~~~ 145 (1371)
| +||+ .++++. ..+.+.++|.++ ++.++.+.. ....+.++..+|
T Consensus 86 s-------~DG~---~~~v~n~~~~~v~v~D~~t---------------le~v~~I~~~~~~~~~~~~Rv~aIv~s~--- 137 (369)
T PF02239_consen 86 S-------PDGK---YVYVANYEPGTVSVIDAET---------------LEPVKTIPTGGMPVDGPESRVAAIVASP--- 137 (369)
T ss_dssp ---------TTT---EEEEEEEETTEEEEEETTT-----------------EEEEEE--EE-TTTS---EEEEEE-S---
T ss_pred c-------CCCC---EEEEEecCCCceeEecccc---------------ccceeecccccccccccCCCceeEEecC---
Confidence 9 9994 344333 389999999876 334443322 234677888888
Q ss_pred CCcEEEEEEC-CCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEE-EeCCCeEEEEEcccCCccccCCCCC
Q 000654 146 GNRSLAIGCS-DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPE 223 (1371)
Q Consensus 146 dg~~Latgs~-Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Las-gs~dg~I~vWd~~~~~~~~~~~~~~ 223 (1371)
....++..-. -+.|.+.|....+.+..-........+...+ ++++.++++ ...++.|-++|..++
T Consensus 138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~---dpdgry~~va~~~sn~i~viD~~~~---------- 204 (369)
T PF02239_consen 138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGF---DPDGRYFLVAANGSNKIAVIDTKTG---------- 204 (369)
T ss_dssp SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE----TTSSEEEEEEGGGTEEEEEETTTT----------
T ss_pred CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccccc---CcccceeeecccccceeEEEeeccc----------
Confidence 7775555555 4788888887654432222222334555555 778887655 566789999998722
Q ss_pred CCCCCCCCCCcceeeecccccceeeEEEEe----cccCCEEEEE-------Ec--CCCCEEEEEeCCCcEEEEEccCCcc
Q 000654 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLV----GHEGSIFRIE-------WS--SCGSKLVSVSDDRSARIWEVRAEYW 290 (1371)
Q Consensus 224 ~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~----gH~~~I~~v~-------~s--pdg~~LaS~s~Dg~VriWdl~~~~~ 290 (1371)
+.+..+. .|...+..+- |. ..+...++.-....+.+||..+.+.
T Consensus 205 -----------------------k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 205 -----------------------KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp -----------------------EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred -----------------------eEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 2221111 1333333221 11 1222332322223555677666544
Q ss_pred cCCCCceeeeceEeecCCccEEEEEEc--CCEEEEE----eCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEE
Q 000654 291 KDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA----GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLL 363 (1371)
Q Consensus 291 ~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sg----s~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L 363 (1371)
++ .+...... ..+..+ .+++... ....+|.|+|. +.+.+..+....+..+..+.|+++|+.+
T Consensus 262 -----v~-----~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 262 -----VK-----TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp -----EE-----EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred -----EE-----EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence 33 33333344 445555 3677666 45689999999 6666677765444458999999999966
Q ss_pred EEEEC--CCcEEEEEcC
Q 000654 364 VTAGF--DSAIKVHQFQ 378 (1371)
Q Consensus 364 ~Tgg~--Dg~I~lwdl~ 378 (1371)
..... ++.|.++|..
T Consensus 331 ~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 331 WVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp EEEEE--TTEEEEEETT
T ss_pred EEEEecCCCEEEEEECC
Confidence 54443 3479999984
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.96 E-value=1.6e-06 Score=103.06 Aligned_cols=271 Identities=10% Similarity=0.021 Sum_probs=161.7
Q ss_pred CCEEEEEe--CCcEEEEECCCCeEEEEEEeecCccEE-EEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCC
Q 000654 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (1371)
Q Consensus 35 ~~llaaG~--dg~I~Iwd~~sg~~l~~~~~~~~~~I~-~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~ 111 (1371)
+.+++... ++.|.|.|..+.+.+.++.... .+| .+.|+ |||+ .++++..|+.|.++|+.+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~--~~h~~~~~s-------~Dgr---~~yv~~rdg~vsviD~~~----- 67 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG--APHAGLKFS-------PDGR---YLYVANRDGTVSVIDLAT----- 67 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST--TEEEEEE-T-------T-SS---EEEEEETTSEEEEEETTS-----
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC--CceeEEEec-------CCCC---EEEEEcCCCeEEEEECCc-----
Confidence 34555444 5999999999999999998643 345 46788 9984 566666699999999986
Q ss_pred CCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEE-CCCcEEEEECCCCeEEEEEecCC------cceEEEE
Q 000654 112 SQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPE------RCLLYSM 184 (1371)
Q Consensus 112 ~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs-~Dg~I~vWd~~~~~~~~~l~~~~------~~~v~s~ 184 (1371)
.+.+.+++.- ....++++++ ||++++++. ..+.+.++|..+.+.++.+.... ..-+.++
T Consensus 68 ----------~~~v~~i~~G-~~~~~i~~s~---DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aI 133 (369)
T PF02239_consen 68 ----------GKVVATIKVG-GNPRGIAVSP---DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAI 133 (369)
T ss_dssp ----------SSEEEEEE-S-SEEEEEEE-----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEE
T ss_pred ----------ccEEEEEecC-CCcceEEEcC---CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeE
Confidence 3455555433 3468899999 999887664 68999999999999888776432 1112222
Q ss_pred EeeccCCCCc-EEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEE
Q 000654 185 KLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE 263 (1371)
Q Consensus 185 ~~~~~s~d~~-~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~ 263 (1371)
.. ++... ++++--..++|.+-|+.. ...................
T Consensus 134 v~---s~~~~~fVv~lkd~~~I~vVdy~d--------------------------------~~~~~~~~i~~g~~~~D~~ 178 (369)
T PF02239_consen 134 VA---SPGRPEFVVNLKDTGEIWVVDYSD--------------------------------PKNLKVTTIKVGRFPHDGG 178 (369)
T ss_dssp EE----SSSSEEEEEETTTTEEEEEETTT--------------------------------SSCEEEEEEE--TTEEEEE
T ss_pred Ee---cCCCCEEEEEEccCCeEEEEEecc--------------------------------ccccceeeecccccccccc
Confidence 22 44555 455555558888888761 1112222333456778899
Q ss_pred EcCCCCEEEEE-eCCCcEEEEEccCCcccCCCCceeee--------ceEeecCC--ccEEEEEEcCCEEEEEeCCCeEEE
Q 000654 264 WSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVG--------SSVLYGHN--ARVWDCCLTDSFIITAGEDCTCRV 332 (1371)
Q Consensus 264 ~spdg~~LaS~-s~Dg~VriWdl~~~~~~~~~~~~~~~--------~~~~~gh~--~~I~~l~~s~~~L~Sgs~Dg~I~V 332 (1371)
|+|++++++.+ ..+..|-++|..+++.. ..+. +.....|. +++|...-.+...++.-....+.+
T Consensus 179 ~dpdgry~~va~~~sn~i~viD~~~~k~v-----~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v 253 (369)
T PF02239_consen 179 FDPDGRYFLVAANGSNKIAVIDTKTGKLV-----ALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV 253 (369)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEETTTTEEE-----EEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred cCcccceeeecccccceeEEEeeccceEE-----EEeeccccccccccccccCCCcceEEeeccccceecccccCCcccc
Confidence 99999987664 45668889998876541 1111 01112232 234544433444434333446668
Q ss_pred EeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEE----ECCCcEEEEEcC
Q 000654 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA----GFDSAIKVHQFQ 378 (1371)
Q Consensus 333 Wd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tg----g~Dg~I~lwdl~ 378 (1371)
|+. +.+.++.+....+ + .-+..+|++++|... ...++|.++|.+
T Consensus 254 ~d~~~wkvv~~I~~~G~-g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 254 HDDYAWKVVKTIPTQGG-G-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp STTTBTSEEEEEE-SSS-S---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred chhhcCeEEEEEECCCC-c-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 887 7889999988766 5 677889999999887 345899999985
No 228
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.96 E-value=8.5e-08 Score=104.89 Aligned_cols=291 Identities=16% Similarity=0.194 Sum_probs=174.0
Q ss_pred CcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe-----EEEEEEeec-----------CccEEEEEeecccccc
Q 000654 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFH-----------GIRLHGISCNFINCTE 80 (1371)
Q Consensus 18 ~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~-----~l~~~~~~~-----------~~~I~~i~~s~~~~~~ 80 (1371)
.-|.+|.|. -+ |.+||+|. +|.|.+|.-.... ...+++.|+ ..+|..|.|.
T Consensus 26 diis~vef~--~~----Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~------ 93 (433)
T KOG1354|consen 26 DIISAVEFD--HY----GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL------ 93 (433)
T ss_pred cceeeEEee--cc----cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceec------
Confidence 347999999 55 88999999 7999999753221 223333332 1468888887
Q ss_pred CCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEE
Q 000654 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (1371)
Q Consensus 81 ~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~ 160 (1371)
++++ ...++++..|++|++|.+.........+ .....+-...|..+..- +.+..|-.+
T Consensus 94 -~~~n-~a~FLlstNdktiKlWKi~er~~k~~~~----------~~~~~~~~~~~~~lr~p---------~~~~~~~~v- 151 (433)
T KOG1354|consen 94 -DDGN-LAEFLLSTNDKTIKLWKIRERGSKKEGY----------NLPEEGPPGTITSLRLP---------VEGRHDLEV- 151 (433)
T ss_pred -CCCC-ccEEEEecCCcceeeeeeeccccccccc----------cccccCCCCccceeece---------eecccccee-
Confidence 4442 2356777779999999998644111110 00011122233333321 111111111
Q ss_pred EEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeec
Q 000654 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1371)
Q Consensus 161 vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~ 240 (1371)
...+.+.+...+.+.+.++.+ +.|...++++. |=.|.+|+++ ..++.+.|.
T Consensus 152 -----ea~prRv~aNaHtyhiNSIS~---NsD~Et~lSAD-dLRINLWnle--------------------i~d~sFnIV 202 (433)
T KOG1354|consen 152 -----EASPRRVYANAHTYHINSISV---NSDKETFLSAD-DLRINLWNLE--------------------IIDQSFNIV 202 (433)
T ss_pred -----eeeeeeeccccceeEeeeeee---cCccceEeecc-ceeeeecccc--------------------ccCCceeEE
Confidence 012233444556666777766 66777777765 6778899987 112222222
Q ss_pred ccccceeeEEEEecccCCEEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcccCC------CCceeeeceEeecCCccEEE
Q 000654 241 DQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDS------DSIEEVGSSVLYGHNARVWD 313 (1371)
Q Consensus 241 ~~~~~~~~~~~l~gH~~~I~~v~~spd-g~~LaS~s~Dg~VriWdl~~~~~~~~------~~~~~~~~~~~~gh~~~I~~ 313 (1371)
+.. -..+..-+..|++..|+|. ...++-.|..|+||+.|++....-.. ....+.....+.+--..|.+
T Consensus 203 DIK-----P~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISD 277 (433)
T KOG1354|consen 203 DIK-----PANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISD 277 (433)
T ss_pred Ecc-----ccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhc
Confidence 211 0111223467888999995 46777788899999999985321000 00000000122223456889
Q ss_pred EEEc--CCEEEEEeCCCeEEEEeC--CCcEEEEEeeccC-----------cC---EEEEEEcCCCCEEEEEECCCcEEEE
Q 000654 314 CCLT--DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIG-----------RG---IWRCLYDSLSSLLVTAGFDSAIKVH 375 (1371)
Q Consensus 314 l~~s--~~~L~Sgs~Dg~I~VWd~--~g~~l~~l~~h~~-----------~~---V~sl~~spdg~~L~Tgg~Dg~I~lw 375 (1371)
+.|+ |+++++-. --+|++||+ +.+++.++..|.. +. -..++|+.++.+++||+....++++
T Consensus 278 vKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf 356 (433)
T KOG1354|consen 278 VKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVF 356 (433)
T ss_pred eEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEe
Confidence 9998 67887754 358999999 7788888887742 12 2467899999999999999999999
Q ss_pred Ec
Q 000654 376 QF 377 (1371)
Q Consensus 376 dl 377 (1371)
++
T Consensus 357 ~~ 358 (433)
T KOG1354|consen 357 NL 358 (433)
T ss_pred cC
Confidence 97
No 229
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=3.7e-07 Score=106.32 Aligned_cols=306 Identities=13% Similarity=0.141 Sum_probs=185.2
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE--
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-- 94 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~-- 94 (1371)
..+++..+++ ++ |+++|.+.+..+.|++..++..+.+... . .+..+.|+ |-| ..+.++
T Consensus 34 ~~~~~v~~~S--~~----G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fS-------P~g----~yL~T~e~ 93 (566)
T KOG2315|consen 34 SRPCNVFAYS--NN----GRLFAYSDNQVVKVFEIATLKVVLCVEL--K-KTYDLLFS-------PKG----NYLLTWEP 93 (566)
T ss_pred CCcceeEEEc--CC----CcEEEEEcCCeEEEEEccCCcEEEEecc--c-eeeeeeec-------ccc----cccccccc
Confidence 3456677888 77 8999999999999999998864443332 2 68999999 776 344443
Q ss_pred ----CC-----CeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECC
Q 000654 95 ----GE-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1371)
Q Consensus 95 ----gd-----~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~ 165 (1371)
.+ ..+.+|+.++.. .......+...+ |+..|++ |.. |+.--..+.+.+|+..
T Consensus 94 ~~i~~~~~~~~pn~~v~~vet~~-------------~~s~~q~k~Q~~--W~~qfs~---dEs-l~arlv~nev~f~~~~ 154 (566)
T KOG2315|consen 94 WAIYGPKNASNPNVLVYNVETGV-------------QRSQIQKKMQNG--WVPQFSI---DES-LAARLVSNEVQFYDLG 154 (566)
T ss_pred cccccCCCCCCCceeeeeeccce-------------ehhheehhhhcC--ccccccc---chh-hhhhhhcceEEEEecC
Confidence 23 346799988622 111111222234 4788887 554 3333345679999997
Q ss_pred CCeEE-EEEecCCcceEEEEEeeccCCCCcEEEE-----EeCCCeEEEEEcccCCccccCC--------------CCCCC
Q 000654 166 NSSII-LEVHSPERCLLYSMKLWGDNLEALRIAS-----GTIYNEIIVWKVDWEHVAPLLN--------------SPEGN 225 (1371)
Q Consensus 166 ~~~~~-~~l~~~~~~~v~s~~~~~~s~d~~~Las-----gs~dg~I~vWd~~~~~~~~~~~--------------~~~~~ 225 (1371)
+.+.+ ..+.. .+...+.+. ..|....||+ ++.-..|+||.+.......... +....
T Consensus 155 ~f~~~~~kl~~-~~i~~f~lS---pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 155 SFKTIQHKLSV-SGITMLSLS---PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT 230 (566)
T ss_pred Cccceeeeeec-cceeeEEec---CCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCc
Confidence 74432 23321 221222221 1222334444 4566789999876222111100 00000
Q ss_pred --------CCCCC---CCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEE--eCCCcEEEEEccCCcccC
Q 000654 226 --------HAHGS---SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV--SDDRSARIWEVRAEYWKD 292 (1371)
Q Consensus 226 --------s~~~~---~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~--s~Dg~VriWdl~~~~~~~ 292 (1371)
..|.+ .-...++.+...+ .......+ .-+++|+++.|+|+++-++.+ -.-..+.|+|++..-
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--- 305 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--- 305 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEec-CceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE---
Confidence 01110 0133444444433 11222222 247999999999999876654 345678899987642
Q ss_pred CCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCC---CeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEE
Q 000654 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (1371)
Q Consensus 293 ~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~D---g~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tg 366 (1371)
.+.-.+++=.++-|+ +++|+.||.+ |.|-|||+ +.+++..+.... -+-+.|+|||.+++|+
T Consensus 306 ----------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~---tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 306 ----------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN---TTVFEWSPDGEYFLTA 372 (566)
T ss_pred ----------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC---ceEEEEcCCCcEEEEE
Confidence 333335566778887 6888888754 78999999 777777776554 3568899999999987
Q ss_pred EC------CCcEEEEEcCCCCcc
Q 000654 367 GF------DSAIKVHQFQAFLPG 383 (1371)
Q Consensus 367 g~------Dg~I~lwdl~~~~~~ 383 (1371)
.. |+.++||+..|..+.
T Consensus 373 TTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 373 TTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred eccccEEecCCeEEEEecCceee
Confidence 74 899999999886543
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.94 E-value=4.5e-07 Score=98.61 Aligned_cols=309 Identities=13% Similarity=0.086 Sum_probs=184.8
Q ss_pred cEEEEeCCCCc------ccCcEEEEEEEecCCCCCCCCEEEEEe--CCcEEEEECCCCeEEEEEEeecCccEEEEEeecc
Q 000654 5 DLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFI 76 (1371)
Q Consensus 5 tV~iWdl~~~~------h~~~Vtavafs~~pd~~~~~~llaaG~--dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~ 76 (1371)
.+-|=|..+.+ ....|.-+.+. -| .-+++++. ++.|.+|++...+-..++..... ++..+.||
T Consensus 30 rlviRd~~tlq~~qlf~cldki~yieW~--ad----s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a-gls~~~WS-- 100 (447)
T KOG4497|consen 30 RLVIRDSETLQLHQLFLCLDKIVYIEWK--AD----SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA-GLSSISWS-- 100 (447)
T ss_pred EEEEeccchhhHHHHHHHHHHhhheeee--cc----ceeeeeeeeccceEEEEEeecceeEEEeccCCC-cceeeeEC--
Confidence 35566666665 35667788888 66 46777766 69999999998888788876555 79999999
Q ss_pred ccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC
Q 000654 77 NCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1371)
Q Consensus 77 ~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~ 155 (1371)
|||+ .++..+. +-.|.||.+.+.. ...+. --...+..++|+| +|++.+.++.
T Consensus 101 -----Pdgr---hiL~tseF~lriTVWSL~t~~-------------~~~~~---~pK~~~kg~~f~~---dg~f~ai~sR 153 (447)
T KOG4497|consen 101 -----PDGR---HILLTSEFDLRITVWSLNTQK-------------GYLLP---HPKTNVKGYAFHP---DGQFCAILSR 153 (447)
T ss_pred -----CCcc---eEeeeecceeEEEEEEeccce-------------eEEec---ccccCceeEEECC---CCceeeeeec
Confidence 9993 3444444 7899999998743 11111 1122345566666 6665554433
Q ss_pred C------------------------------------CcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEE
Q 000654 156 D------------------------------------NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1371)
Q Consensus 156 D------------------------------------g~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasg 199 (1371)
- +.+.+||-.-...+..++.. ..+.++..+|-+.+|+.|
T Consensus 154 rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~-----lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG-----LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec-----cceeEEEeccccceEEee
Confidence 1 11223332211111111111 123444458889999999
Q ss_pred eCCCeEEEEEccc----CC-cc------cc-------CC-------CCCCCCCCCCCCCcceeeec-------cccccee
Q 000654 200 TIYNEIIVWKVDW----EH-VA------PL-------LN-------SPEGNHAHGSSSDFKCFKLQ-------DQQHTAV 247 (1371)
Q Consensus 200 s~dg~I~vWd~~~----~~-~~------~~-------~~-------~~~~~s~~~~~~~~~~i~i~-------~~~~~~~ 247 (1371)
+.|+.++|-+--+ ++ .. +. .. .-..+.+ .+-...+| ..+....
T Consensus 229 syD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p-----~~~~a~~~~~se~~YE~~~~pv 303 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP-----TDLEAHIWEESETIYEQQMTPV 303 (447)
T ss_pred ccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC-----CccccCccccchhhhhhhhcce
Confidence 9999999854221 00 00 00 00 0000000 11111122 2121222
Q ss_pred eEEEEe------cccCCEEEEEEcCCCCEEEEEeCC--CcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC-
Q 000654 248 NLFRLV------GHEGSIFRIEWSSCGSKLVSVSDD--RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD- 318 (1371)
Q Consensus 248 ~~~~l~------gH~~~I~~v~~spdg~~LaS~s~D--g~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~- 318 (1371)
.++.++ ...-.+-.++|++|..+++|-.+. ..+.+||++..+. ....-...+|....|+|
T Consensus 304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l-----------~avLiQk~piraf~WdP~ 372 (447)
T KOG4497|consen 304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL-----------HAVLIQKHPIRAFEWDPG 372 (447)
T ss_pred eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh-----------hhhhhhccceeEEEeCCC
Confidence 233332 223456779999999999986543 5799999988654 13334456788899984
Q ss_pred -CEEEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCc
Q 000654 319 -SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1371)
Q Consensus 319 -~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~ 371 (1371)
..|+.+.....+.+|...|.......... -.|..+.|..+|..++-.+.|..
T Consensus 373 ~prL~vctg~srLY~W~psg~~~V~vP~~G-F~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 373 RPRLVVCTGKSRLYFWAPSGPRVVGVPKKG-FNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CceEEEEcCCceEEEEcCCCceEEecCCCC-ceeeeEEecCCCcEEEEEcCCce
Confidence 45666666667999999775444333333 36999999999999999998853
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=1.3e-06 Score=103.21 Aligned_cols=454 Identities=15% Similarity=0.159 Sum_probs=261.3
Q ss_pred cCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEe
Q 000654 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (1371)
Q Consensus 64 ~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp 142 (1371)
...+.+++.|. ... .+++++| ||.++|..+.+.........-...-.+..-+++.||...|.-+.|+.
T Consensus 13 nnvkL~c~~WN-------ke~----gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe 81 (1189)
T KOG2041|consen 13 NNVKLHCAEWN-------KES----GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE 81 (1189)
T ss_pred CCceEEEEEEc-------ccC----CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc
Confidence 34478999998 443 5777777 89999999986542221111001113455678999999999999998
Q ss_pred ecCCCcEEEEEECCCcEEEEECCCCeEEEEE-ecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCC
Q 000654 143 VCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (1371)
Q Consensus 143 ~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l-~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~ 221 (1371)
..+.|-|...+|.|.+|=+-+|.....+ ....++.+.|+.+ ..||..++..-.||.|.|=.++.+
T Consensus 82 ---~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW---n~dG~kIcIvYeDGavIVGsvdGN-------- 147 (1189)
T KOG2041|consen 82 ---NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW---NLDGTKICIVYEDGAVIVGSVDGN-------- 147 (1189)
T ss_pred ---ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEE---cCCCcEEEEEEccCCEEEEeeccc--------
Confidence 8888988899999999998877654332 3345567778877 778999999999999999887722
Q ss_pred CCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCccc--CCCC-cee
Q 000654 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK--DSDS-IEE 298 (1371)
Q Consensus 222 ~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~--~~~~-~~~ 298 (1371)
+||...-++.. ...+.|++|.+.++.+-..|.+.++|....-.. ..++ +..
T Consensus 148 ----------------RIwgKeLkg~~----------l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~ 201 (1189)
T KOG2041|consen 148 ----------------RIWGKELKGQL----------LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNG 201 (1189)
T ss_pred ----------------eecchhcchhe----------ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEee
Confidence 33332212211 225889999998888888899999997653210 0011 111
Q ss_pred eeceEeecCCccEEEEEEc-C---------CEEEEEeCCCeEEEEeC--CCcEEEEEeeccCcCEEEEEEcCCCCEEEEE
Q 000654 299 VGSSVLYGHNARVWDCCLT-D---------SFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (1371)
Q Consensus 299 ~~~~~~~gh~~~I~~l~~s-~---------~~L~Sgs~Dg~I~VWd~--~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tg 366 (1371)
.+ .+......|-.+.|. + ..|+.+-..|.+.|-.- +..++..-.+ - .|..+.|+++|..|+.+
T Consensus 202 tg--~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m-~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 202 TG--IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--M-KIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred ee--eecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--c-EeecceecCCCcEEEEc
Confidence 11 222223346666664 1 58999999999988766 3344333222 2 38899999999999999
Q ss_pred ECCC---------cEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEE
Q 000654 367 GFDS---------AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1371)
Q Consensus 367 g~Dg---------~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t 437 (1371)
|.|. .|.++..-| ..++.+......|+.++|-..|-.++..
T Consensus 277 G~~~da~~~~d~n~v~Fysp~G------------------------------~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 277 GNDSDADEPTDSNKVHFYSPYG------------------------------HIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred cCcccccCccccceEEEeccch------------------------------hheEEEecCCceeeeeEEcCCceEEEEE
Confidence 9753 222222211 1122222333568888888888777777
Q ss_pred cCCcEEEEEeecCCCceeEEe-------EeecCC--ccEEEEeecCCCCC----------CCCCCCCEEEEEeCCCcEEE
Q 000654 438 NHGYLYHTKLCDMDSVNWNKI-------LQVSEG--MPIICMDLLSNEPK----------YPCGIDDWVALGDGKGNMTI 498 (1371)
Q Consensus 438 ~~G~i~~~~l~~~~~~~w~~i-------~~~~~~--~~I~~ld~~~~~~~----------~s~~~~~lla~gs~dG~I~i 498 (1371)
-++.+++..+... .+|..+ .+..+. ..|.-++...+... ..+.+--+|+.-..+|.+.-
T Consensus 327 vdsfiyfanIRP~--ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e 404 (1189)
T KOG2041|consen 327 VDSFIYFANIRPE--YKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPE 404 (1189)
T ss_pred ecceEEEEeeccc--ceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcc
Confidence 7888887766432 334322 222211 11222222222100 11112223333344555544
Q ss_pred EEE-cCCccccceeeeeeecc-----CcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccC--------
Q 000654 499 VRV-VGDVHTPQLSFTFTWSA-----GIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESS-------- 564 (1371)
Q Consensus 499 wdi-~~~~~~~~~~~~~~~~~-----~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~-------- 564 (1371)
++. .+.. ......+.-.. .+-..+...|+| -++.+++.++.+ .+.+|....+.....+.+.
T Consensus 405 ~s~le~~~--~~~~l~LCNSIGT~lD~kytdirP~Fv~--vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~ 479 (1189)
T KOG2041|consen 405 YSTLENRS--RVYFLQLCNSIGTSLDYKYTDIRPKFVC--VNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRF 479 (1189)
T ss_pred hhhhhccc--ceEEEeeecccCCcCCCCcceeeeeEEE--ecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccc
Confidence 421 1100 00000111000 111122222333 345667777664 5778976544321111110
Q ss_pred ---------ccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcc
Q 000654 565 ---------KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1371)
Q Consensus 565 ---------~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~ 612 (1371)
....+..-..-..+...+|.+++.+ .++|.+|-..|.|+=|.+++.
T Consensus 480 h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv 534 (1189)
T KOG2041|consen 480 HGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNV 534 (1189)
T ss_pred cCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecce
Confidence 0001111111123556778888877 789999999999999998875
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.93 E-value=2.2e-07 Score=100.04 Aligned_cols=270 Identities=16% Similarity=0.121 Sum_probs=165.9
Q ss_pred CcEEEEECCCCeEEE--EEEeecCccEEEEEeeccccccCCCCcceeeEEE-EECCCeEEEEEeccCCCCCCCCCCccce
Q 000654 44 SQVLLYDLEAGTLIR--PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA-LFGEKRVKLFELNFELSPNSQYQPETCV 120 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~--~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la-~~gd~sV~vwdl~~~~~~~~~~~~~~~v 120 (1371)
|.+.+|++.+-+.+. +++......++.+.|+. ...+| +..++ +-..|.|.++...... ...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~----~~~~g---~~~l~~a~a~G~i~~~r~~~~~---------ss~ 109 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRI----RETDG---DFNLLDAHARGQIQLYRNDEDE---------SSV 109 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeee----ccCCc---cceeeeccccceEEEEeeccce---------eee
Confidence 468899987765433 44444444677777772 22444 22333 3347999999887432 111
Q ss_pred eeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEE--EEecCCcceEEEEEeeccCCCCcEEEE
Q 000654 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIAS 198 (1371)
Q Consensus 121 ~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~--~l~~~~~~~v~s~~~~~~s~d~~~Las 198 (1371)
.++.+...+-......++.|++ .+..++++..+|.+.+-+........ ..+.|+ -.++...|- ..+.+++++
T Consensus 110 ~L~~ls~~ki~~~~~lslD~~~---~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He-~E~Wta~f~--~~~pnlvyt 183 (339)
T KOG0280|consen 110 HLRGLSSKKISVVEALSLDIST---SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE-FEAWTAKFS--DKEPNLVYT 183 (339)
T ss_pred eecccchhhhhheeeeEEEeec---cCceEEEEcCCCcEEEEecceeeeeecccccccc-eeeeeeecc--cCCCceEEe
Confidence 1222222221112356788888 78889999999999866655444333 444443 335555553 334589999
Q ss_pred EeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcC-CCCEEEEEeCC
Q 000654 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDD 277 (1371)
Q Consensus 199 gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~sp-dg~~LaS~s~D 277 (1371)
|+.|+.+..||++. | .....+..+-|...|.+|.-+| .+.+++||+.|
T Consensus 184 GgDD~~l~~~D~R~----p---------------------------~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRI----P---------------------------KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred cCCCceEEEEEecC----C---------------------------cceeeecceeeecceEEEecCCCCCceEEEeccc
Confidence 99999999999981 0 1122233556889999999886 57799999999
Q ss_pred CcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCC---EEEEEeCCCeEEEEeCC---Cc---EEEEEeeccC
Q 000654 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS---FIITAGEDCTCRVWGSD---GK---QLKMIKEHIG 348 (1371)
Q Consensus 278 g~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~---~L~Sgs~Dg~I~VWd~~---g~---~l~~l~~h~~ 348 (1371)
-.|++||.++...+ + .-..-.+.||.+..++. .++.++.-.-.+|-+.+ .+ .+...+.|..
T Consensus 233 e~i~~~DtRnm~kP----l------~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdS 302 (339)
T KOG0280|consen 233 ECIRVLDTRNMGKP----L------FKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDS 302 (339)
T ss_pred cceeeeehhcccCc----c------ccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccc
Confidence 99999999965442 1 11223478999999852 33444444456666662 22 2334455555
Q ss_pred cCEEEEEEcCCCCEEEEEEC-CCcEE-EEEc
Q 000654 349 RGIWRCLYDSLSSLLVTAGF-DSAIK-VHQF 377 (1371)
Q Consensus 349 ~~V~sl~~spdg~~L~Tgg~-Dg~I~-lwdl 377 (1371)
-+..-.|......|+|++. |+.++ +|-.
T Consensus 303 -l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 303 -LCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred -eeeccccccccceeeeeeccccceeeeeee
Confidence 2445555444457888764 77755 6643
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.92 E-value=2.3e-08 Score=114.89 Aligned_cols=212 Identities=15% Similarity=0.160 Sum_probs=136.8
Q ss_pred cEEEEeCCCCc----------ccC-cEEEEEEEecCCCCCCCCEEEEEeC-CcEEEEECCCCeEEEEE---EeecCccEE
Q 000654 5 DLSEWRLDVGQ----------YLG-EISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPF---QVFHGIRLH 69 (1371)
Q Consensus 5 tV~iWdl~~~~----------h~~-~Vtavafs~~pd~~~~~~llaaG~d-g~I~Iwd~~sg~~l~~~---~~~~~~~I~ 69 (1371)
.+.+|++..+. +.+ .-+|=+|.+.++ ...+--|+.|.+ |.|.+.|....+....+ ......+|+
T Consensus 145 ~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a-~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT 223 (636)
T KOG2394|consen 145 ELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTA-TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVT 223 (636)
T ss_pred eEEEEEccCcchhccchhhhcccCCCCceeccccccc-CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceE
Confidence 46788877433 111 124555542122 122455777775 89999887552211111 112234899
Q ss_pred EEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCC-CCCCCC----CCccce--------eeeeeeeccCCCCcEE
Q 000654 70 GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFEL-SPNSQY----QPETCV--------NLSLVQSLPRLSHWVF 136 (1371)
Q Consensus 70 ~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~-~~~~~~----~~~~~v--------~~~~~~~l~gh~~~I~ 136 (1371)
+|.|. |.+. ..++++..+|.+.+||..... .....+ +++... .-.++....--.+.|+
T Consensus 224 ~ikWv-------pg~~--~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in 294 (636)
T KOG2394|consen 224 CIKWV-------PGSD--SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSIN 294 (636)
T ss_pred EEEEE-------eCCC--ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccc
Confidence 99998 4331 156777779999999875321 000011 111000 0012222222345899
Q ss_pred EEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCcc
Q 000654 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1371)
Q Consensus 137 ~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~ 216 (1371)
..+|+| ||++||+.+.||.+||+|..+.+++..++.--+. +.+++| +||+.+|++|+.|--|.||.+.
T Consensus 295 ~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-LLCvcW---SPDGKyIvtGGEDDLVtVwSf~----- 362 (636)
T KOG2394|consen 295 EFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-LLCVCW---SPDGKYIVTGGEDDLVTVWSFE----- 362 (636)
T ss_pred ceeEcC---CCceEEEEecCceEEEeeccHHHHHHHHHhhccc-eEEEEE---cCCccEEEecCCcceEEEEEec-----
Confidence 999999 9999999999999999999887766555443333 345555 8999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcC
Q 000654 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (1371)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~sp 266 (1371)
..+.+.+-.||..+|..|+|.|
T Consensus 363 ----------------------------erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ----------------------------ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ----------------------------cceEEEeccccccceeeEeecc
Confidence 6777888889999999999973
No 234
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=1.9e-07 Score=114.07 Aligned_cols=201 Identities=6% Similarity=0.077 Sum_probs=127.2
Q ss_pred cCCCCcEEEEEEEeecCCCcEEEEEE---CCCcEEEEECCCCeEEE--EEecCCcceEEEEEeeccCCCCcEEEEE-eCC
Q 000654 129 PRLSHWVFDVCFLKVCNGNRSLAIGC---SDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIASG-TIY 202 (1371)
Q Consensus 129 ~gh~~~I~~v~fsp~~~dg~~Latgs---~Dg~I~vWd~~~~~~~~--~l~~~~~~~v~s~~~~~~s~d~~~Lasg-s~d 202 (1371)
..+.+.+...+|+| ||+.|+..+ .+..|.+|++.+++... .+..+. ....+ +||+..|+.. ..+
T Consensus 195 t~~~~~~~~p~wSP---DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~----~~~~~---SPDG~~La~~~~~~ 264 (429)
T PRK03629 195 HRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN----GAPAF---SPDGSKLAFALSKT 264 (429)
T ss_pred ecCCCceeeeEEcC---CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCc----CCeEE---CCCCCEEEEEEcCC
Confidence 34567899999999 999887654 24579999998875432 222221 23344 8899887754 444
Q ss_pred C--eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCC-Cc
Q 000654 203 N--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-RS 279 (1371)
Q Consensus 203 g--~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~D-g~ 279 (1371)
| .|.+||+. ++. ...+..+...+....|+|||+.|+..+++ +.
T Consensus 265 g~~~I~~~d~~---------------------------------tg~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~ 310 (429)
T PRK03629 265 GSLNLYVMDLA---------------------------------SGQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGR 310 (429)
T ss_pred CCcEEEEEECC---------------------------------CCC-EEEccCCCCCcCceEECCCCCEEEEEeCCCCC
Confidence 4 58888876 222 22344445567889999999998877764 45
Q ss_pred EEEE--EccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCC---CeEEEEeCCCcEEEEEeeccCcCEE
Q 000654 280 ARIW--EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGIW 352 (1371)
Q Consensus 280 VriW--dl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~D---g~I~VWd~~g~~l~~l~~h~~~~V~ 352 (1371)
..|| |+.++.. + .+..+........|+ +++|+..+.+ ..|.+||+.+.....+.... ...
T Consensus 311 ~~Iy~~d~~~g~~------~-----~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~ 377 (429)
T PRK03629 311 PQVYKVNINGGAP------Q-----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDE 377 (429)
T ss_pred ceEEEEECCCCCe------E-----EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCC
Confidence 5555 5544332 2 222333445567777 4677665443 35888998433344444322 245
Q ss_pred EEEEcCCCCEEEEEECCCc---EEEEEcCCCCccccc
Q 000654 353 RCLYDSLSSLLVTAGFDSA---IKVHQFQAFLPGSLE 386 (1371)
Q Consensus 353 sl~~spdg~~L~Tgg~Dg~---I~lwdl~~~~~~~l~ 386 (1371)
...|+|||++|+..+.|+. +.++++++...+.+.
T Consensus 378 ~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 378 TPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence 6789999999999888765 667777665544443
No 235
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=7.7e-07 Score=106.25 Aligned_cols=246 Identities=9% Similarity=-0.019 Sum_probs=152.4
Q ss_pred EEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecC--
Q 000654 68 LHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-- 145 (1371)
Q Consensus 68 I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~-- 145 (1371)
-.++.|+ |.| +||.++...|.+.|... .+.++.+..|...|+.+.|.|...
T Consensus 18 ~~A~Dw~-------~~G-----LiAygshslV~VVDs~s---------------~q~iqsie~h~s~V~~VrWap~~~p~ 70 (1062)
T KOG1912|consen 18 RNAADWS-------PSG-----LIAYGSHSLVSVVDSRS---------------LQLIQSIELHQSAVTSVRWAPAPSPR 70 (1062)
T ss_pred ccccccC-------ccc-----eEEEecCceEEEEehhh---------------hhhhhccccCccceeEEEeccCCCch
Confidence 4456677 775 88888889999999764 677888999999999999988320
Q ss_pred -------CCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCC-cEEEEEeCCCeEEEEEcccCCccc
Q 000654 146 -------GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAP 217 (1371)
Q Consensus 146 -------dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~-~~Lasgs~dg~I~vWd~~~~~~~~ 217 (1371)
..-+||++.-.|.|.+||...+..+..+..+... +..+++.+.-++. .+|++-...+.|.+|+..+
T Consensus 71 ~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~-~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt----- 144 (1062)
T KOG1912|consen 71 DLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDS-VQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT----- 144 (1062)
T ss_pred hccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcc-hhheeeeeccCcchheeEEecCCcEEEEEEccC-----
Confidence 1235788888999999999888777666554433 3556666555555 5677777789999999873
Q ss_pred cCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcccCCCCc
Q 000654 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1371)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~sp-dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~ 296 (1371)
+..+-....-.....++.+.| |.+.+..-+..|.+.+-+......+ ....
T Consensus 145 ----------------------------G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep-~~pg 195 (1062)
T KOG1912|consen 145 ----------------------------GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEP-DVPG 195 (1062)
T ss_pred ----------------------------CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCC-CCCc
Confidence 222222222233445566666 4455555555555555554433221 1111
Q ss_pred eeeeceEeec----------------CCcc-------EEE--EEEcC--CEEEEEeCCCeEEEEeC-CCcEEEEEeeccC
Q 000654 297 EEVGSSVLYG----------------HNAR-------VWD--CCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIG 348 (1371)
Q Consensus 297 ~~~~~~~~~g----------------h~~~-------I~~--l~~s~--~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~ 348 (1371)
+++. .... ++.. .++ ++|++ +.++-...-..+.|+|+ -..++....-..+
T Consensus 196 k~~q--I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~ 273 (1062)
T KOG1912|consen 196 KEFQ--ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG 273 (1062)
T ss_pred eeEE--EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC
Confidence 1110 1111 1111 112 23343 22333334566899999 3455666555555
Q ss_pred cCEEEEEEcCCCC--EEEEEECCCcEEEEEcC
Q 000654 349 RGIWRCLYDSLSS--LLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 349 ~~V~sl~~spdg~--~L~Tgg~Dg~I~lwdl~ 378 (1371)
++.-+.+-|+++ .|.++-.||.+.+|-.+
T Consensus 274 -~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 274 -GAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred -CcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 466677766654 78899999999999873
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=4.6e-07 Score=110.81 Aligned_cols=233 Identities=14% Similarity=0.068 Sum_probs=146.3
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE----CCCeEEEEEeccCCCCCCCCCCccc
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----GEKRVKLFELNFELSPNSQYQPETC 119 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~----gd~sV~vwdl~~~~~~~~~~~~~~~ 119 (1371)
..|.++|...+.. ..+.... ..+...+|+ |||+ .|+.. ++..+.+|++..+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~-~~~~~p~wS-------PDG~----~la~~s~~~g~~~i~i~dl~~G~----------- 234 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSP-QPLMSPAWS-------PDGS----KLAYVTFESGRSALVIQTLANGA----------- 234 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCC-CceeeeEEc-------CCCC----EEEEEEecCCCcEEEEEECCCCC-----------
Confidence 3799999875543 3333333 378999999 9993 44432 24578999987532
Q ss_pred eeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEE-ECCC--cEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEE
Q 000654 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1371)
Q Consensus 120 v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latg-s~Dg--~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~L 196 (1371)
.+.+..+.++ +...+|+| ||+.|+.. ..++ .|.+||+.+++........ .......| +||+..|
T Consensus 235 --~~~l~~~~~~---~~~~~~SP---DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~--~~~~~~~w---SPDG~~I 301 (429)
T PRK03629 235 --VRQVASFPRH---NGAPAFSP---DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR--SNNTEPTW---FPDSQNL 301 (429)
T ss_pred --eEEccCCCCC---cCCeEECC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC--CCcCceEE---CCCCCEE
Confidence 2333344444 44689999 99988754 3344 5889999887654332222 12334444 7899888
Q ss_pred EEEeC-CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEe
Q 000654 197 ASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1371)
Q Consensus 197 asgs~-dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s 275 (1371)
+..+. ++...||.+... .+ ....+..+........|+|||++|+..+
T Consensus 302 ~f~s~~~g~~~Iy~~d~~-------------------------------~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 302 AYTSDQAGRPQVYKVNIN-------------------------------GG-APQRITWEGSQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred EEEeCCCCCceEEEEECC-------------------------------CC-CeEEeecCCCCccCEEECCCCCEEEEEE
Confidence 76654 455566654300 11 1223333444566789999999988765
Q ss_pred CC---CcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCe---EEEEeCCCcEEEEEeecc
Q 000654 276 DD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT---CRVWGSDGKQLKMIKEHI 347 (1371)
Q Consensus 276 ~D---g~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~---I~VWd~~g~~l~~l~~h~ 347 (1371)
.+ ..|.+||+.++.. + .+.. ........|+ +.+|+.++.++. +.+++++|+....+..|.
T Consensus 350 ~~~g~~~I~~~dl~~g~~------~-----~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~ 417 (429)
T PRK03629 350 SNGGQQHIAKQDLATGGV------Q-----VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATD 417 (429)
T ss_pred ccCCCceEEEEECCCCCe------E-----EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCC
Confidence 43 3588899877643 2 2221 1122345676 578888877764 677788888888888887
Q ss_pred CcCEEEEEEcC
Q 000654 348 GRGIWRCLYDS 358 (1371)
Q Consensus 348 ~~~V~sl~~sp 358 (1371)
+ .+...+|+|
T Consensus 418 ~-~~~~p~Wsp 427 (429)
T PRK03629 418 G-QVKFPAWSP 427 (429)
T ss_pred C-CcCCcccCC
Confidence 7 588888887
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=5.9e-07 Score=104.26 Aligned_cols=277 Identities=12% Similarity=0.095 Sum_probs=168.8
Q ss_pred cEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecC
Q 000654 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1371)
Q Consensus 67 ~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~ 145 (1371)
.-+.|..+ |||+ +++|++- .-.|++||+..-. ++....+. ..+..+.... .
T Consensus 53 ast~ik~s-------~DGq---Y~lAtG~YKP~ikvydlanLS-------------LKFERhlD---ae~V~feiLs--D 104 (703)
T KOG2321|consen 53 ASTRIKVS-------PDGQ---YLLATGTYKPQIKVYDLANLS-------------LKFERHLD---AEVVDFEILS--D 104 (703)
T ss_pred ccceeEec-------CCCc---EEEEecccCCceEEEEcccce-------------eeeeeccc---ccceeEEEec--c
Confidence 45677777 9994 4444444 6899999997522 33333222 2333333322 2
Q ss_pred CCcEEEEEECCCcEEEEECCCCeE-EEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCC
Q 000654 146 GNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1371)
Q Consensus 146 dg~~Latgs~Dg~I~vWd~~~~~~-~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~ 224 (1371)
|-..++.-..|.+|-+-.- -|.. ...+....+ .+.++. +.-. |+.++....|+=++++
T Consensus 105 D~SK~v~L~~DR~IefHak-~G~hy~~RIP~~GR----Dm~y~~--~scD-ly~~gsg~evYRlNLE------------- 163 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAK-YGRHYRTRIPKFGR----DMKYHK--PSCD-LYLVGSGSEVYRLNLE------------- 163 (703)
T ss_pred chhhheEeecCceeeehhh-cCeeeeeecCcCCc----cccccC--CCcc-EEEeecCcceEEEEcc-------------
Confidence 5555666667888876432 2221 222222222 333322 2233 3444445677777887
Q ss_pred CCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeec-eE
Q 000654 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-SV 303 (1371)
Q Consensus 225 ~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~-~~ 303 (1371)
.+..+..+.-..+.+++|..++...+|++|+.||.|-.||.++... ...+.. ..
T Consensus 164 --------------------qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-----v~~l~~~~~ 218 (703)
T KOG2321|consen 164 --------------------QGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-----VGTLDAASS 218 (703)
T ss_pred --------------------ccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-----heeeecccc
Confidence 5566666666678999999999999999999999999999998654 221110 12
Q ss_pred eecCCc-----cEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCC--CCEEEEEECCCcEE
Q 000654 304 LYGHNA-----RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL--SSLLVTAGFDSAIK 373 (1371)
Q Consensus 304 ~~gh~~-----~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spd--g~~L~Tgg~Dg~I~ 373 (1371)
...|.+ .|+++.|+ +-.++.|..+|.+.|||+ ..+++..-.....-+|..+.|.+. ++.|++. +...++
T Consensus 219 v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~k 297 (703)
T KOG2321|consen 219 VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILK 297 (703)
T ss_pred cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhh
Confidence 233444 39999998 568999999999999999 555554433222336888999765 3455554 456899
Q ss_pred EEEcC-CCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEc-CCcEEEEEeec
Q 000654 374 VHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HGYLYHTKLCD 449 (1371)
Q Consensus 374 lwdl~-~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~-~G~i~~~~l~~ 449 (1371)
|||-. |.. +.++. | ...++.+++.|++.++..+. ++.+..+-+..
T Consensus 298 iWd~~~Gk~------------------~asiE-p------------t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 298 IWDECTGKP------------------MASIE-P------------TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred hcccccCCc------------------eeecc-c------------cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 99973 221 11111 1 13478899999887665554 45554444433
No 238
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.80 E-value=0.0013 Score=87.00 Aligned_cols=362 Identities=13% Similarity=0.090 Sum_probs=196.5
Q ss_pred CCCcEEEEEEEeecCCCcEEEEEECCCcEEEE----ECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEE
Q 000654 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW----DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (1371)
Q Consensus 131 h~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vW----d~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~ 206 (1371)
..+.|.++.|.+ +...|+.+..+|.|.+. +..+.. .++-+...+.+.+++| |||+.+|+..+.++++.
T Consensus 74 ~~~~ivs~~yl~---d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~W---SPD~Ella~vT~~~~l~ 145 (928)
T PF04762_consen 74 PNDKIVSFQYLA---DSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASW---SPDEELLALVTGEGNLL 145 (928)
T ss_pred CCCcEEEEEecc---CCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEE---CCCcCEEEEEeCCCEEE
Confidence 457899999999 88888889999999998 443332 2222233334566666 89999999999999998
Q ss_pred EEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 000654 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1371)
Q Consensus 207 vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~ 286 (1371)
+-+.. ..++....-+... ......++.|....=.-+.=.
T Consensus 146 ~mt~~----------------------------------fd~i~E~~l~~~~-------~~~~~~VsVGWGkKeTQF~Gs 184 (928)
T PF04762_consen 146 LMTRD----------------------------------FDPISEVPLDSDD-------FGESKHVSVGWGKKETQFHGS 184 (928)
T ss_pred EEecc----------------------------------ceEEEEeecCccc-------cCCCceeeeccCcccCccCcc
Confidence 87644 1112111111000 000122222211110001000
Q ss_pred CCcccC---CCC-ceeeeceEeecCCccEEEEEEc--CCEEEEEeC---C---CeEEEEeCCCcEEEEEeeccCcCEEEE
Q 000654 287 AEYWKD---SDS-IEEVGSSVLYGHNARVWDCCLT--DSFIITAGE---D---CTCRVWGSDGKQLKMIKEHIGRGIWRC 354 (1371)
Q Consensus 287 ~~~~~~---~~~-~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~---D---g~I~VWd~~g~~l~~l~~h~~~~V~sl 354 (1371)
.++... .++ +..+....+. +...-..++|. +.++|+.+. . ..+|||+-+|....+-..-.+ -=.++
T Consensus 185 ~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~g-Le~~l 262 (928)
T PF04762_consen 185 AGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDG-LEGAL 262 (928)
T ss_pred hhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCC-ccCCc
Confidence 000000 000 0000001222 44455678887 578877763 2 579999998875554432222 13468
Q ss_pred EEcCCCCEEEEEEC---CCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCC
Q 000654 355 LYDSLSSLLVTAGF---DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1371)
Q Consensus 355 ~~spdg~~L~Tgg~---Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~ 431 (1371)
+|-|.|++||+.-. .-.|.+|.-+|-.... |.+.. +.....|..++|++|+
T Consensus 263 ~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge----------------F~l~~----------~~~~~~v~~l~Wn~ds 316 (928)
T PF04762_consen 263 SWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE----------------FTLRF----------DPEEEKVIELAWNSDS 316 (928)
T ss_pred cCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee----------------EecCC----------CCCCceeeEEEECCCC
Confidence 99999999998775 3456667665532111 22211 1234568999999999
Q ss_pred cEEEEEcCCcEEEEEeecCCCceeEEeEeec--CCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccc
Q 000654 432 TLYIATNHGYLYHTKLCDMDSVNWNKILQVS--EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ 509 (1371)
Q Consensus 432 ~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~--~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~ 509 (1371)
.+|+..-...+. +|..++..|-.-.... ....+..+ . +.+.+...+.+.+.+|.+..+++.-....
T Consensus 317 ~iLAv~~~~~vq---LWt~~NYHWYLKqei~~~~~~~~~~~--~-----Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~-- 384 (928)
T PF04762_consen 317 EILAVWLEDRVQ---LWTRSNYHWYLKQEIRFSSSESVNFV--K-----WDPEKPLRLHVLTSNGQYEIYDFAWDVSR-- 384 (928)
T ss_pred CEEEEEecCCce---EEEeeCCEEEEEEEEEccCCCCCCce--E-----ECCCCCCEEEEEecCCcEEEEEEEEEEEe--
Confidence 988876666555 6666777774332222 22222112 1 22345667888887788877765311000
Q ss_pred eeeeeeeccCcccceeEEEEeecC-CCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeee-eeeecccCCcEEEEE
Q 000654 510 LSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLV-AEFSSCFGARIMCLD 587 (1371)
Q Consensus 510 ~~~~~~~~~~~~~~il~~~~~~s~-d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~-~~~~~~h~~~Itsl~ 587 (1371)
... .++ |...++.- ....+++-.++... +++| ..+.......|.+++
T Consensus 385 -------s~~-----------~~~~D~g~vaVI-DG~~lllTpf~~a~------------VPPPMs~~~l~~~~~v~~va 433 (928)
T PF04762_consen 385 -------SPG-----------SSPNDNGTVAVI-DGNKLLLTPFRRAV------------VPPPMSSYELELPSPVNDVA 433 (928)
T ss_pred -------cCC-----------CCccCceEEEEE-eCCeEEEecccccC------------CCchHhceEEcCCCCcEEEE
Confidence 000 001 11111211 11234443333211 1111 112234567899999
Q ss_pred eecCCCEEEEecCCCeEEEEEcCcc
Q 000654 588 ASFEDEVLFCGDLRGNLVLFPLLRD 612 (1371)
Q Consensus 588 ~spdg~lLatGs~dGtI~Iwd~~~~ 612 (1371)
|++++..+|+-..||+|.+|.+...
T Consensus 434 f~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 434 FSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EeCCCCeEEEEECCCCEEEEEecCC
Confidence 9999988999999999999997654
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=5.1e-07 Score=98.97 Aligned_cols=235 Identities=14% Similarity=0.122 Sum_probs=140.0
Q ss_pred CCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe-----EEEEEecCCcc-----------eEEEEEeeccCCCCc
Q 000654 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----IILEVHSPERC-----------LLYSMKLWGDNLEAL 194 (1371)
Q Consensus 131 h~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~-----~~~~l~~~~~~-----------~v~s~~~~~~s~d~~ 194 (1371)
-.+-|.+|.|.. .|.+||||..+|.|.++.-.... ....++.|+.. .+..+.++.. .+..
T Consensus 24 eadiis~vef~~---~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~-~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDH---YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD-GNLA 99 (433)
T ss_pred hhcceeeEEeec---ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCC-CCcc
Confidence 346789999998 99999999999999998654322 22233332211 1223444433 2344
Q ss_pred EEEEEeCCCeEEEEEcccCCccccCC-CCCCCCCCCCCCCcceeeecc-----cccceeeEEEE-ecccCCEEEEEEcCC
Q 000654 195 RIASGTIYNEIIVWKVDWEHVAPLLN-SPEGNHAHGSSSDFKCFKLQD-----QQHTAVNLFRL-VGHEGSIFRIEWSSC 267 (1371)
Q Consensus 195 ~Lasgs~dg~I~vWd~~~~~~~~~~~-~~~~~s~~~~~~~~~~i~i~~-----~~~~~~~~~~l-~gH~~~I~~v~~spd 267 (1371)
.++..+.|.+|++|.+.......... .+....+. .-..+++-. ......+.+.+ .+|.-.|.+|.++.|
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~----~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPG----TITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCC----ccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence 56666779999999987433222110 00001000 011111110 00011222222 368889999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC---CEEEEEeCCCeEEEEeCCCcE-----
Q 000654 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDGKQ----- 339 (1371)
Q Consensus 268 g~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~---~~L~Sgs~Dg~I~VWd~~g~~----- 339 (1371)
+..++|+. |=.|.+|++.-.... ..+--++|.....-+.-|++..|+| ++++-.+..|+|++-|+....
T Consensus 176 ~Et~lSAD-dLRINLWnlei~d~s--FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 176 KETFLSAD-DLRINLWNLEIIDQS--FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred cceEeecc-ceeeeeccccccCCc--eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 99999874 557999998754321 1122122222223345688889984 788888999999999983211
Q ss_pred EEEEe------------eccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 340 LKMIK------------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 340 l~~l~------------~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
-+.+. .--. .|..+.|+++|+|+++-.. -+|++||+.
T Consensus 253 sKlfEepedp~~rsffseiIs-SISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIIS-SISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred hhhhccccCCcchhhHHHHhh-hhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 11111 1112 4788899999999997543 489999993
No 240
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.78 E-value=0.0003 Score=92.87 Aligned_cols=297 Identities=11% Similarity=0.163 Sum_probs=173.3
Q ss_pred CcEEEEEEEecCCCCCCCCEEEEEeCCcEEEE----ECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEE
Q 000654 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLY----DLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1371)
Q Consensus 18 ~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iw----d~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~ 93 (1371)
+.|.++.|. ++ ...++++-.+|.|.++ |..+... +.-+.-+..|.+++|| ||. +.++++
T Consensus 76 ~~ivs~~yl--~d---~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WS-------PD~---Ella~v 138 (928)
T PF04762_consen 76 DKIVSFQYL--AD---SESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWS-------PDE---ELLALV 138 (928)
T ss_pred CcEEEEEec--cC---CCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEEC-------CCc---CEEEEE
Confidence 457777777 77 2245555558999999 5554432 2222223379999999 998 366666
Q ss_pred ECCCeEEEEEeccCC----------------------CCCCCCCCcccee-------ee----eeeeccCCCCcEEEEEE
Q 000654 94 FGEKRVKLFELNFEL----------------------SPNSQYQPETCVN-------LS----LVQSLPRLSHWVFDVCF 140 (1371)
Q Consensus 94 ~gd~sV~vwdl~~~~----------------------~~~~~~~~~~~v~-------~~----~~~~l~gh~~~I~~v~f 140 (1371)
.+++++.+-.-+.+- .++.+|....... .. ....+. +.+.-..+.|
T Consensus 139 T~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISW 217 (928)
T PF04762_consen 139 TGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISW 217 (928)
T ss_pred eCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEE
Confidence 778888776543111 0011111100000 00 011222 4456677888
Q ss_pred EeecCCCcEEEEEEC---C---CcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeC---CCeEEEEEcc
Q 000654 141 LKVCNGNRSLAIGCS---D---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI---YNEIIVWKVD 211 (1371)
Q Consensus 141 sp~~~dg~~Latgs~---D---g~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~---dg~I~vWd~~ 211 (1371)
-. ||.++|+.+. . ..+|||+-+ |.....-+ +....-.+++| .|.|.++|+.-. ...|.+|.-+
T Consensus 218 RG---DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~W---rPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 218 RG---DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSW---RPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred CC---CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccC---CCCCCEEEEEEEcCCCcEEEEEecC
Confidence 87 9999988764 2 578999875 55433332 33333334444 688999988653 3445555544
Q ss_pred cCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 000654 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1371)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~ 291 (1371)
.- ..+.....+......|..+.|++|+..||..-.|. |.+|-..+..-
T Consensus 290 GL------------------------------rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW- 337 (928)
T PF04762_consen 290 GL------------------------------RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW- 337 (928)
T ss_pred Cc------------------------------EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE-
Confidence 10 01222222224566789999999999999987775 99999887542
Q ss_pred CCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeC-----CC--c------EEEEEee----------
Q 000654 292 DSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-----DG--K------QLKMIKE---------- 345 (1371)
Q Consensus 292 ~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~-----~g--~------~l~~l~~---------- 345 (1371)
.... .........+..+.|+ +..|.....++.+..+++ .+ . .+..+.+
T Consensus 338 ----YLKq--ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~ 411 (928)
T PF04762_consen 338 ----YLKQ--EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRR 411 (928)
T ss_pred ----EEEE--EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccc
Confidence 1100 0222333344458887 456666666666655443 11 0 1111111
Q ss_pred ------------ccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 346 ------------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 346 ------------h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.-..+|..++|++++..+++-..||.+.+|...
T Consensus 412 a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 412 AVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred cCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 112269999999998889999999999999974
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=1e-06 Score=108.38 Aligned_cols=200 Identities=11% Similarity=0.041 Sum_probs=128.2
Q ss_pred eeccCCCCcEEEEEEEeecCCCcEEEEEEC---CCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEE-EEeC
Q 000654 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (1371)
Q Consensus 126 ~~l~gh~~~I~~v~fsp~~~dg~~Latgs~---Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~La-sgs~ 201 (1371)
..+..|...+...+|+| ||+.|+..+. +..|.+||+.+++.. .+..... ......+ +||+..|+ +.+.
T Consensus 195 ~~lt~~~~~v~~p~wSp---DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g-~~~~~~~---SPDG~~la~~~~~ 266 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSP---NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG-MTFAPRF---SPDGRKVVMSLSQ 266 (435)
T ss_pred EEEecCCCCeEeeEECC---CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC-cccCcEE---CCCCCEEEEEEec
Confidence 34556778999999999 9998887653 468999999887653 2222221 2334444 78898765 5555
Q ss_pred CCe--EEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC-CC
Q 000654 202 YNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR 278 (1371)
Q Consensus 202 dg~--I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-Dg 278 (1371)
++. |.+||+. .+ ....+..+........|+||+++|+..+. ++
T Consensus 267 ~g~~~Iy~~d~~---------------------------------~~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g 312 (435)
T PRK05137 267 GGNTDIYTMDLR---------------------------------SG-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG 312 (435)
T ss_pred CCCceEEEEECC---------------------------------CC-ceEEccCCCCccCceeEcCCCCEEEEEECCCC
Confidence 655 6666665 12 22345556666777899999999887764 33
Q ss_pred --cEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCC---CeEEEEeCCCcEEEEEeeccCcCE
Q 000654 279 --SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGI 351 (1371)
Q Consensus 279 --~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~D---g~I~VWd~~g~~l~~l~~h~~~~V 351 (1371)
.|.+||+..+.. + .+..+...+....|+ ++.|+....+ ..|.+||+++.....+.. .. .+
T Consensus 313 ~~~Iy~~d~~g~~~------~-----~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~~-~~ 379 (435)
T PRK05137 313 SPQLYVMNADGSNP------R-----RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-GF-LV 379 (435)
T ss_pred CCeEEEEECCCCCe------E-----EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-CC-CC
Confidence 577778765433 2 233334456667787 5677665443 358888885554444432 22 36
Q ss_pred EEEEEcCCCCEEEEEECC------CcEEEEEcCCC
Q 000654 352 WRCLYDSLSSLLVTAGFD------SAIKVHQFQAF 380 (1371)
Q Consensus 352 ~sl~~spdg~~L~Tgg~D------g~I~lwdl~~~ 380 (1371)
....|+|||++|+..+.+ ..+.++++.+.
T Consensus 380 ~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 788999999988765543 24666676553
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.77 E-value=5.7e-07 Score=110.37 Aligned_cols=199 Identities=15% Similarity=0.059 Sum_probs=124.0
Q ss_pred eccCCCCcEEEEEEEeecCCCcEEEEEEC---CCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEE-EEeCC
Q 000654 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIY 202 (1371)
Q Consensus 127 ~l~gh~~~I~~v~fsp~~~dg~~Latgs~---Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~La-sgs~d 202 (1371)
.+..+...+...+|+| +|+.|+..+. +..|.+||+.+++.... .... ....+..+ +|++..|+ +.+.+
T Consensus 198 ~lt~~~~~v~~p~wSp---Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~-g~~~~~~~---SpDG~~l~~~~s~~ 269 (433)
T PRK04922 198 TILRSAEPILSPAWSP---DGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFR-GINGAPSF---SPDGRRLALTLSRD 269 (433)
T ss_pred EeecCCCccccccCCC---CCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCC-CCccCceE---CCCCCEEEEEEeCC
Confidence 3445667899999999 9998887764 34699999988765322 2111 12223444 78888765 44555
Q ss_pred C--eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC-CCc
Q 000654 203 N--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRS 279 (1371)
Q Consensus 203 g--~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-Dg~ 279 (1371)
| .|.+||+. ++. ...+..+.......+|+||+++|+.+++ ++.
T Consensus 270 g~~~Iy~~d~~---------------------------------~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 270 GNPEIYVMDLG---------------------------------SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR 315 (433)
T ss_pred CCceEEEEECC---------------------------------CCC-eEECccCCCCccceEECCCCCEEEEEECCCCC
Confidence 5 58888887 222 2334455555667899999999887764 445
Q ss_pred --EEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCC---eEEEEeC-CCcEEEEEeeccCcCE
Q 000654 280 --ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGS-DGKQLKMIKEHIGRGI 351 (1371)
Q Consensus 280 --VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg---~I~VWd~-~g~~l~~l~~h~~~~V 351 (1371)
|.++|+.++.. + .+..+.......+|+ +++|+..+.++ .|.+||+ +++. ..+. +.. ..
T Consensus 316 ~~iy~~dl~~g~~------~-----~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-~~Lt-~~~-~~ 381 (433)
T PRK04922 316 PQIYRVAASGGSA------E-----RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-RTLT-PGS-LD 381 (433)
T ss_pred ceEEEEECCCCCe------E-----EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-EECC-CCC-CC
Confidence 55556555432 1 222223334467887 56776654333 5899999 4443 3443 222 24
Q ss_pred EEEEEcCCCCEEEEEECC---CcEEEEEcCCCC
Q 000654 352 WRCLYDSLSSLLVTAGFD---SAIKVHQFQAFL 381 (1371)
Q Consensus 352 ~sl~~spdg~~L~Tgg~D---g~I~lwdl~~~~ 381 (1371)
....|+|||++|+..+.+ +.+.++++++..
T Consensus 382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 382 ESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 567899999987776653 346666776543
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.75 E-value=6.1e-07 Score=97.03 Aligned_cols=113 Identities=19% Similarity=0.317 Sum_probs=86.0
Q ss_pred ccCCEEEEEEcCCCCEEEEE--eCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeC---C
Q 000654 255 HEGSIFRIEWSSCGSKLVSV--SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE---D 327 (1371)
Q Consensus 255 H~~~I~~v~~spdg~~LaS~--s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~---D 327 (1371)
..++|.+++|+|+++.+|.. ..++.|.+||+... . ...-+...+..+.|+ +++|++|+. .
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~-~------------i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~ 124 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK-K------------IFSFGTQPRNTISWSPDGRFLVLAGFGNLN 124 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCccc-E------------eEeecCCCceEEEECCCCCEEEEEEccCCC
Confidence 44679999999999987554 45779999999632 1 222235677889999 589998874 4
Q ss_pred CeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEEC------CCcEEEEEcCCCCcc
Q 000654 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF------DSAIKVHQFQAFLPG 383 (1371)
Q Consensus 328 g~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~------Dg~I~lwdl~~~~~~ 383 (1371)
|.+.+||. +.+.+..+. |. .++.++|+|||++|+|+.. |+.++||+..|+.+.
T Consensus 125 G~l~~wd~~~~~~i~~~~-~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 125 GDLEFWDVRKKKKISTFE-HS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred cEEEEEECCCCEEeeccc-cC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 67999999 566666554 33 3789999999999999774 899999999876543
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=9.5e-07 Score=108.43 Aligned_cols=231 Identities=13% Similarity=0.039 Sum_probs=140.0
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC----CCeEEEEEeccCCCCCCCCCCccc
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPETC 119 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g----d~sV~vwdl~~~~~~~~~~~~~~~ 119 (1371)
..|.+||...+.. ..+..+.. .+...+|+ ||| ..|+..+ ...|.+|++..+.
T Consensus 184 ~~l~i~D~~g~~~-~~lt~~~~-~v~~p~wS-------pDg----~~la~~s~~~~~~~l~~~dl~~g~----------- 239 (433)
T PRK04922 184 YALQVADSDGYNP-QTILRSAE-PILSPAWS-------PDG----KKLAYVSFERGRSAIYVQDLATGQ----------- 239 (433)
T ss_pred EEEEEECCCCCCc-eEeecCCC-ccccccCC-------CCC----CEEEEEecCCCCcEEEEEECCCCC-----------
Confidence 4699999864433 34443333 68899999 998 3444433 3579999987533
Q ss_pred eeeeeeeeccCCCCcEEEEEEEeecCCCcEEE-EEECCC--cEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEE
Q 000654 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1371)
Q Consensus 120 v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~La-tgs~Dg--~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~L 196 (1371)
.+.+.. +.+...+.+|+| +|+.|+ +.+.++ .|.+||+.+++.. .+.... .......| ++|+..|
T Consensus 240 --~~~l~~---~~g~~~~~~~Sp---DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~-~~~~~~~~---spDG~~l 306 (433)
T PRK04922 240 --RELVAS---FRGINGAPSFSP---DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHF-GIDTEPTW---APDGKSI 306 (433)
T ss_pred --EEEecc---CCCCccCceECC---CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCC-CCccceEE---CCCCCEE
Confidence 222322 333455789999 998775 445555 5999999887643 333221 22334444 7889887
Q ss_pred EEEe-CCCe--EEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEE
Q 000654 197 ASGT-IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1371)
Q Consensus 197 asgs-~dg~--I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS 273 (1371)
+..+ .+|. |.++++. .+. ...+..+.......+|+|||++|+.
T Consensus 307 ~f~sd~~g~~~iy~~dl~---------------------------------~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~ 352 (433)
T PRK04922 307 YFTSDRGGRPQIYRVAAS---------------------------------GGS-AERLTFQGNYNARASVSPDGKKIAM 352 (433)
T ss_pred EEEECCCCCceEEEEECC---------------------------------CCC-eEEeecCCCCccCEEECCCCCEEEE
Confidence 7665 3455 4444444 111 1222223344557899999999887
Q ss_pred EeCCC---cEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCC---CeEEEEeCCCcEEEEEee
Q 000654 274 VSDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKE 345 (1371)
Q Consensus 274 ~s~Dg---~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~D---g~I~VWd~~g~~l~~l~~ 345 (1371)
.+.++ .|.+||+.++.. . .+ .+........|+ +++|+..+.+ ..+.+++++|.....+..
T Consensus 353 ~~~~~~~~~I~v~d~~~g~~------~-----~L-t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGSV------R-----TL-TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred EECCCCceeEEEEECCCCCe------E-----EC-CCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 65443 589999877644 1 22 122233456777 5666655543 457778887777777766
Q ss_pred ccCcCEEEEEEcC
Q 000654 346 HIGRGIWRCLYDS 358 (1371)
Q Consensus 346 h~~~~V~sl~~sp 358 (1371)
+.+ .+...+|+|
T Consensus 421 ~~g-~~~~p~wsp 432 (433)
T PRK04922 421 ADG-EVREPAWSP 432 (433)
T ss_pred CCC-CCCCCccCC
Confidence 655 367777776
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=2.8e-06 Score=103.96 Aligned_cols=193 Identities=10% Similarity=-0.006 Sum_probs=121.1
Q ss_pred eccCCCCcEEEEEEEeecCCCcEEEEEECC---CcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEE-EEeCC
Q 000654 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIY 202 (1371)
Q Consensus 127 ~l~gh~~~I~~v~fsp~~~dg~~Latgs~D---g~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~La-sgs~d 202 (1371)
.+..+.+.+.+.+|+| +|+.|+..+.+ ..|.+||+.+++.......+ .......+ +||+..|+ +.+.+
T Consensus 190 ~l~~~~~~v~~p~wSP---DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~--g~~~~~~~---SPDG~~la~~~~~~ 261 (427)
T PRK02889 190 SALSSPEPIISPAWSP---DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK--GSNSAPAW---SPDGRTLAVALSRD 261 (427)
T ss_pred EeccCCCCcccceEcC---CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC--CCccceEE---CCCCCEEEEEEccC
Confidence 3446678899999999 99988877643 35999999888654322111 12234444 78998776 56778
Q ss_pred CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC-CCcEE
Q 000654 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (1371)
Q Consensus 203 g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-Dg~Vr 281 (1371)
|...||.+.. .......+..+.+......|+|||++|+..++ ++...
T Consensus 262 g~~~Iy~~d~--------------------------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 262 GNSQIYTVNA--------------------------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQ 309 (427)
T ss_pred CCceEEEEEC--------------------------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcE
Confidence 8878877651 11123344445555667889999998887665 46777
Q ss_pred EEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCC---eEEEEeCCCcEEEEEeeccCcCEEEEEE
Q 000654 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIWRCLY 356 (1371)
Q Consensus 282 iWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg---~I~VWd~~g~~l~~l~~h~~~~V~sl~~ 356 (1371)
||.+...... .+ .+..+........|+ +++|+..+.++ .|.+||+.+.....+.... ......|
T Consensus 310 Iy~~~~~~g~----~~-----~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p~~ 378 (427)
T PRK02889 310 IYRMPASGGA----AQ-----RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RDESPSF 378 (427)
T ss_pred EEEEECCCCc----eE-----EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--CccCceE
Confidence 7776432110 12 111122233456777 57887666554 6999999433334443322 2467899
Q ss_pred cCCCCEEEEEECCC
Q 000654 357 DSLSSLLVTAGFDS 370 (1371)
Q Consensus 357 spdg~~L~Tgg~Dg 370 (1371)
+||++.|+..+.++
T Consensus 379 spdg~~l~~~~~~~ 392 (427)
T PRK02889 379 APNGRYILYATQQG 392 (427)
T ss_pred CCCCCEEEEEEecC
Confidence 99999888777544
No 246
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.70 E-value=1.5e-05 Score=96.29 Aligned_cols=262 Identities=12% Similarity=0.080 Sum_probs=150.5
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEE-EEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCC
Q 000654 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1371)
Q Consensus 36 ~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~-~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~ 113 (1371)
..++++. ++.|..+|..+|+++.++..... +. +... .++ .+++...++.+..+|..++.
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~v--------~~~----~v~v~~~~g~l~ald~~tG~----- 126 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVGA--------DGG----LVFVGTEKGEVIALDAEDGK----- 126 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceEE--------cCC----EEEEEcCCCEEEEEECCCCc-----
Confidence 3455554 78999999999999887764332 21 1111 122 56666668999999987643
Q ss_pred CCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceE----EEEEeecc
Q 000654 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----YSMKLWGD 189 (1371)
Q Consensus 114 ~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v----~s~~~~~~ 189 (1371)
......+. +.+.+.-.. .+..++.+..++.+..||..+|+.+.+......... .+..+
T Consensus 127 --------~~W~~~~~---~~~~~~p~v----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--- 188 (377)
T TIGR03300 127 --------ELWRAKLS---SEVLSPPLV----ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--- 188 (377)
T ss_pred --------EeeeeccC---ceeecCCEE----ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---
Confidence 11111111 222221111 234566777899999999999988776654322110 01111
Q ss_pred CCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEeccc--CCEEEEEEcC-
Q 000654 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE--GSIFRIEWSS- 266 (1371)
Q Consensus 190 s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~--~~I~~v~~sp- 266 (1371)
.+..++.+..++.+..+|.++++.. |... ...-.+.. ..+..+.-+|
T Consensus 189 --~~~~v~~~~~~g~v~ald~~tG~~~-----------------------W~~~-----~~~~~g~~~~~~~~~~~~~p~ 238 (377)
T TIGR03300 189 --ADGGVLVGFAGGKLVALDLQTGQPL-----------------------WEQR-----VALPKGRTELERLVDVDGDPV 238 (377)
T ss_pred --ECCEEEEECCCCEEEEEEccCCCEe-----------------------eeec-----cccCCCCCchhhhhccCCccE
Confidence 1236778888899999998743221 1100 00000000 0000000011
Q ss_pred -CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC-CCcEEEEEe
Q 000654 267 -CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1371)
Q Consensus 267 -dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~ 344 (1371)
.+..++.++.++.++.||..+++.. ..............+..++.++.||.+..+|. +|+.+....
T Consensus 239 ~~~~~vy~~~~~g~l~a~d~~tG~~~------------W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~ 306 (377)
T TIGR03300 239 VDGGQVYAVSYQGRVAALDLRSGRVL------------WKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKND 306 (377)
T ss_pred EECCEEEEEEcCCEEEEEECCCCcEE------------EeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccc
Confidence 2457777888999999999877541 11001112233445788889999999999999 788776553
Q ss_pred eccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 345 ~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
........+... .+..|++++.||.+.++|..
T Consensus 307 ~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 307 ELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred cccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 222212233333 35688899999999999984
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=4.9e-06 Score=102.31 Aligned_cols=230 Identities=13% Similarity=0.094 Sum_probs=139.2
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE----CCCeEEEEEeccCCCCCCCCCCccc
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----GEKRVKLFELNFELSPNSQYQPETC 119 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~----gd~sV~vwdl~~~~~~~~~~~~~~~ 119 (1371)
..|.++|..... ...+..+.. .+...+|+ ||| ..|+.. ++..|.+||+..+.
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~-~v~~p~wS-------pDG----~~lay~s~~~g~~~i~~~dl~~g~----------- 237 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSS-LVLTPRFS-------PNR----QEITYMSYANGRPRVYLLDLETGQ----------- 237 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCC-CeEeeEEC-------CCC----CEEEEEEecCCCCEEEEEECCCCc-----------
Confidence 378899975443 344544444 79999999 998 344443 24689999997533
Q ss_pred eeeeeeeeccCCCCcEEEEEEEeecCCCcEEE-EEECCCc--EEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEE
Q 000654 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1371)
Q Consensus 120 v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~La-tgs~Dg~--I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~L 196 (1371)
.+ .+..+.+.+...+|+| ||+.|+ +.+.++. |.+||+.++... .+.... ....+..+ +||+..|
T Consensus 238 --~~---~l~~~~g~~~~~~~SP---DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~-~~~~~~~~---spDG~~i 304 (435)
T PRK05137 238 --RE---LVGNFPGMTFAPRFSP---DGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSP-AIDTSPSY---SPDGSQI 304 (435)
T ss_pred --EE---EeecCCCcccCcEECC---CCCEEEEEEecCCCceEEEEECCCCceE-EccCCC-CccCceeE---cCCCCEE
Confidence 22 2334556778899999 998765 5555555 777788877653 333222 22333444 7889888
Q ss_pred EEEeC-CC--eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEE
Q 000654 197 ASGTI-YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1371)
Q Consensus 197 asgs~-dg--~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS 273 (1371)
+..+. +| .|.++|+. .+ ....+..+.+.+....|+|||++|+.
T Consensus 305 ~f~s~~~g~~~Iy~~d~~---------------------------------g~-~~~~lt~~~~~~~~~~~SpdG~~ia~ 350 (435)
T PRK05137 305 VFESDRSGSPQLYVMNAD---------------------------------GS-NPRRISFGGGRYSTPVWSPRGDLIAF 350 (435)
T ss_pred EEEECCCCCCeEEEEECC---------------------------------CC-CeEEeecCCCcccCeEECCCCCEEEE
Confidence 76653 33 56666765 11 12233334556677889999999987
Q ss_pred EeCC---CcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCC------CeEEEEeCCCcEEEE
Q 000654 274 VSDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED------CTCRVWGSDGKQLKM 342 (1371)
Q Consensus 274 ~s~D---g~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~D------g~I~VWd~~g~~l~~ 342 (1371)
.+.+ ..|.+||+..+.. + .+ .....+....|+ ++.|+..+.+ ..+.++++++.....
T Consensus 351 ~~~~~~~~~i~~~d~~~~~~------~-----~l-t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 351 TKQGGGQFSIGVMKPDGSGE------R-----IL-TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNERE 418 (435)
T ss_pred EEcCCCceEEEEEECCCCce------E-----ec-cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEE
Confidence 7653 3577888754432 1 11 122245667787 4566554432 257777876655555
Q ss_pred EeeccCcCEEEEEEcC
Q 000654 343 IKEHIGRGIWRCLYDS 358 (1371)
Q Consensus 343 l~~h~~~~V~sl~~sp 358 (1371)
+.. .+ .+...+|+|
T Consensus 419 l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 419 VPT-PG-DASDPAWSP 432 (435)
T ss_pred ccC-CC-CccCcccCC
Confidence 542 33 356666765
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.67 E-value=6.4e-06 Score=100.88 Aligned_cols=197 Identities=13% Similarity=0.066 Sum_probs=123.5
Q ss_pred ccCCCCcEEEEEEEeecCCCcEEEEEECC---CcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEE-EEeCCC
Q 000654 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYN 203 (1371)
Q Consensus 128 l~gh~~~I~~v~fsp~~~dg~~Latgs~D---g~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~La-sgs~dg 203 (1371)
+..+...+...+|+| +|++|+.+..+ ..|.+||+.+++....... . ....+..| +|++..|+ +.+.++
T Consensus 185 l~~~~~~~~~p~~Sp---dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~-~~~~~~~~---spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 185 ITRSREPILSPAWSP---DGQKLAYVSFESGKPEIYVQDLATGQREKVASF-P-GMNGAPAF---SPDGSKLAVSLSKDG 256 (417)
T ss_pred eecCCCceecccCCC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-C-CCccceEE---CCCCCEEEEEECCCC
Confidence 335666789999999 99998877643 4799999988755332221 1 12334444 78887665 444444
Q ss_pred --eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCC-C--
Q 000654 204 --EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-R-- 278 (1371)
Q Consensus 204 --~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~D-g-- 278 (1371)
.|.+|++.+ + ....+..+........|+||+++|+..+.. +
T Consensus 257 ~~~i~~~d~~~---------------------------------~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~ 302 (417)
T TIGR02800 257 NPDIYVMDLDG---------------------------------K-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSP 302 (417)
T ss_pred CccEEEEECCC---------------------------------C-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCc
Confidence 577777761 1 122333444445567899999988776653 3
Q ss_pred cEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCC---eEEEEeCCCcEEEEEeeccCcCEEE
Q 000654 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIWR 353 (1371)
Q Consensus 279 ~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg---~I~VWd~~g~~l~~l~~h~~~~V~s 353 (1371)
.|.++|+.+++. + .+..+...+....|+ +++|+.++.++ .|.+||+.+.....+.... ....
T Consensus 303 ~iy~~d~~~~~~------~-----~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~ 369 (417)
T TIGR02800 303 QIYMMDADGGEV------R-----RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG--LDES 369 (417)
T ss_pred eEEEEECCCCCE------E-----EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC--CCCC
Confidence 577777765433 1 333344556677887 57777777665 7888888444444444332 2445
Q ss_pred EEEcCCCCEEEEEECCC---cEEEEEcCC
Q 000654 354 CLYDSLSSLLVTAGFDS---AIKVHQFQA 379 (1371)
Q Consensus 354 l~~spdg~~L~Tgg~Dg---~I~lwdl~~ 379 (1371)
..|+||+++|+....++ .+.+.+..+
T Consensus 370 p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 370 PSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred ceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 68999999888777654 344445444
No 249
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.66 E-value=1.4e-06 Score=94.30 Aligned_cols=154 Identities=14% Similarity=0.266 Sum_probs=103.2
Q ss_pred EEEEEeecCCCcEEEEEEC----------CCcEEEEECC-CCeEEEEEecCCcceEEEEEeeccCCCCcEEEE--EeCCC
Q 000654 137 DVCFLKVCNGNRSLAIGCS----------DNSIRVWDIS-NSSIILEVHSPERCLLYSMKLWGDNLEALRIAS--GTIYN 203 (1371)
Q Consensus 137 ~v~fsp~~~dg~~Latgs~----------Dg~I~vWd~~-~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Las--gs~dg 203 (1371)
.+.|+| .|++|++-.. -+...+|.+. .+.....+.......+.++.+ +|++..++. |..++
T Consensus 10 ~~~W~~---~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~W---sP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 10 KLHWQP---SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAW---SPNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEecc---cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEE---CcCCCEEEEEEccCCc
Confidence 466777 7766544322 1234455552 223344444433444777777 888887654 45678
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCC---CcE
Q 000654 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD---RSA 280 (1371)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~D---g~V 280 (1371)
.|.+||++ ...+..+ +...+..|.|+|+|++|++++.+ |.|
T Consensus 84 ~v~lyd~~----------------------------------~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 84 KVTLYDVK----------------------------------GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDL 127 (194)
T ss_pred ccEEEcCc----------------------------------ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEE
Confidence 99999986 3334444 35678899999999999998754 679
Q ss_pred EEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeC------CCeEEEEeCCCcEEEEEe
Q 000654 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE------DCTCRVWGSDGKQLKMIK 344 (1371)
Q Consensus 281 riWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~------Dg~I~VWd~~g~~l~~l~ 344 (1371)
.+||....+. + ....| ..+..++|+ +++|+++.. |..++||++.|+.+....
T Consensus 128 ~~wd~~~~~~--------i---~~~~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 128 EFWDVRKKKK--------I---STFEH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEECCCCEE--------e---ecccc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 9999996544 1 22333 347899998 689998864 788999999998876543
No 250
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.66 E-value=3.4e-07 Score=100.50 Aligned_cols=218 Identities=15% Similarity=0.211 Sum_probs=157.0
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEEC-CCCeEEEEEe--cCCcceEEEEEeeccCCCCcEEEE
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI-SNSSIILEVH--SPERCLLYSMKLWGDNLEALRIAS 198 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~-~~~~~~~~l~--~~~~~~v~s~~~~~~s~d~~~Las 198 (1371)
..+++.++||.+.|++...-| ...-+.+.+.|.+++||-- +.++--..+. .|..+ .++.+ ..+...|+.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~---~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~--~~~~y---~~e~~~L~v 85 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIP---KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPC--SAMEY---VSESRRLYV 85 (404)
T ss_pred hhhhhhhcCchhhhhhheecc---CCCCeEEccccceeeeEEeccccccCchhhhhCCCCc--eEeee---eccceEEEE
Confidence 466788899999999999988 6667899999999999943 4444333332 23333 33333 456788999
Q ss_pred EeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCC
Q 000654 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1371)
Q Consensus 199 gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg 278 (1371)
|-..|++.-+.+... . .+....+....|...|+.+-|+....++++++.|.
T Consensus 86 g~~ngtvtefs~sed----------------------------f-nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk 136 (404)
T KOG1409|consen 86 GQDNGTVTEFALSED----------------------------F-NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDK 136 (404)
T ss_pred EEecceEEEEEhhhh----------------------------h-hhcchhhhhhhhhcceeeEEecCCceeEEEecccc
Confidence 999999988877510 0 02333455567888888888888888888888886
Q ss_pred cEEEEEccCCccc-----------------------CC----------CCceeeeceEeecCCccEEEEEEc--CCEEEE
Q 000654 279 SARIWEVRAEYWK-----------------------DS----------DSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (1371)
Q Consensus 279 ~VriWdl~~~~~~-----------------------~~----------~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~S 323 (1371)
.+..--.+.+... .. .....+ .++.+|.+.+.+++|. +..|++
T Consensus 137 ~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i--~~~~~h~~~~~~l~Wd~~~~~LfS 214 (404)
T KOG1409|consen 137 QFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLI--TTFNGHTGEVTCLKWDPGQRLLFS 214 (404)
T ss_pred ceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceE--EEEcCcccceEEEEEcCCCcEEEe
Confidence 6544333322211 00 001111 3778999999999998 579999
Q ss_pred EeCCCeEEEEeCCC--cEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 324 AGEDCTCRVWGSDG--KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 324 gs~Dg~I~VWd~~g--~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
|.+|..+.+||+.| .....+.+|..+ |..+...+--+.|++++.||.|.+|+.+.
T Consensus 215 g~~d~~vi~wdigg~~g~~~el~gh~~k-V~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 215 GASDHSVIMWDIGGRKGTAYELQGHNDK-VQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccccCceEEEeccCCcceeeeeccchhh-hhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999999943 334567788884 99998888888999999999999999954
No 251
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=2.6e-06 Score=104.33 Aligned_cols=234 Identities=11% Similarity=0.049 Sum_probs=138.3
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC----CCeEEEEEeccCCCCCCCCCCccc
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPETC 119 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g----d~sV~vwdl~~~~~~~~~~~~~~~ 119 (1371)
..|.++|.. |.....+..+.. .+...+|+ ||| ..|+..+ ...|.+||+..+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~-~v~~p~wS-------PDG----~~la~~s~~~~~~~I~~~dl~~g~----------- 231 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPE-PIISPAWS-------PDG----TKLAYVSFESKKPVVYVHDLATGR----------- 231 (427)
T ss_pred cEEEEECCC-CCCceEeccCCC-CcccceEc-------CCC----CEEEEEEccCCCcEEEEEECCCCC-----------
Confidence 467777864 443344443343 78899999 998 4444433 2469999997533
Q ss_pred eeeeeeeeccCCCCcEEEEEEEeecCCCcEEE-EEECCCcEEEEE--CCCCeEEEEEecCCcceEEEEEeeccCCCCcEE
Q 000654 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWD--ISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1371)
Q Consensus 120 v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~La-tgs~Dg~I~vWd--~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~L 196 (1371)
...+.. ..+.+...+|+| ||+.|+ +.+.++...||. +..+. ...+..+. ....+..| ++|+..|
T Consensus 232 --~~~l~~---~~g~~~~~~~SP---DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~-~~~~~~~w---SpDG~~l 298 (427)
T PRK02889 232 --RRVVAN---FKGSNSAPAWSP---DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS-GIDTEPFF---SPDGRSI 298 (427)
T ss_pred --EEEeec---CCCCccceEECC---CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC-CCCcCeEE---cCCCCEE
Confidence 222322 334566899999 998776 456777766665 44443 33443322 22333444 7889887
Q ss_pred EEEe-CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEe
Q 000654 197 ASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1371)
Q Consensus 197 asgs-~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s 275 (1371)
+..+ ..|...+|.+... .+. ...+..+........|+|||++|+..+
T Consensus 299 ~f~s~~~g~~~Iy~~~~~-------------------------------~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 299 YFTSDRGGAPQIYRMPAS-------------------------------GGA-AQRVTFTGSYNTSPRISPDGKLLAYIS 346 (427)
T ss_pred EEEecCCCCcEEEEEECC-------------------------------CCc-eEEEecCCCCcCceEECCCCCEEEEEE
Confidence 7554 4567777776500 111 111222223344678999999998877
Q ss_pred CCC---cEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCC-e--EEEEeCCCcEEEEEeecc
Q 000654 276 DDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC-T--CRVWGSDGKQLKMIKEHI 347 (1371)
Q Consensus 276 ~Dg---~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg-~--I~VWd~~g~~l~~l~~h~ 347 (1371)
.++ .|.+||+.++.. + .+.. ........|+ ++.|+.++.++ . +.+.+.+|+....+..+.
T Consensus 347 ~~~g~~~I~v~d~~~g~~------~-----~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~ 414 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQV------T-----ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQG 414 (427)
T ss_pred ccCCcEEEEEEECCCCCe------E-----EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCC
Confidence 654 599999987654 1 2221 1233566787 46666655443 3 444455777777776666
Q ss_pred CcCEEEEEEcCC
Q 000654 348 GRGIWRCLYDSL 359 (1371)
Q Consensus 348 ~~~V~sl~~spd 359 (1371)
+ .+...+|+|-
T Consensus 415 g-~~~~p~wsp~ 425 (427)
T PRK02889 415 G-DVREPSWGPF 425 (427)
T ss_pred C-CCCCCccCCC
Confidence 6 3677777763
No 252
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.65 E-value=1.3e-05 Score=92.48 Aligned_cols=287 Identities=13% Similarity=0.178 Sum_probs=180.9
Q ss_pred cEEEEeCCCCc-----ccCcEEEEEEEecCCCCCCCCEEEEEeC----------------CcEEEEECCCCeEEEEEEee
Q 000654 5 DLSEWRLDVGQ-----YLGEISALCFVHLPSHLSSLPFLLAGSG----------------SQVLLYDLEAGTLIRPFQVF 63 (1371)
Q Consensus 5 tV~iWdl~~~~-----h~~~Vtavafs~~pd~~~~~~llaaG~d----------------g~I~Iwd~~sg~~l~~~~~~ 63 (1371)
.|.+|+-.... ....|.-+.|+ |+ ++||.+-+. ..+.+||+.+|.++..+...
T Consensus 54 ~V~~~~g~~~~~l~~~~~~~V~~~~fS--P~----~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~ 127 (561)
T COG5354 54 GVECWGGPSKAKLVRFRHPDVKYLDFS--PN----EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGI 127 (561)
T ss_pred ceEEccccchhheeeeecCCceecccC--cc----cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecccc
Confidence 36777755443 34568999999 98 899988542 24899999999999988864
Q ss_pred cCcc--EE-EEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEE
Q 000654 64 HGIR--LH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF 140 (1371)
Q Consensus 64 ~~~~--I~-~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~f 140 (1371)
.. + .+ -+.|+ -+. .++|---...+.|+++ +.... ....+.++ ...|....|
T Consensus 128 ~q-~~~~Wp~~k~s-------~~D----~y~ARvv~~sl~i~e~-t~n~~-----------~~p~~~lr--~~gi~dFsi 181 (561)
T COG5354 128 SQ-PYLGWPVLKFS-------IDD----KYVARVVGSSLYIHEI-TDNIE-----------EHPFKNLR--PVGILDFSI 181 (561)
T ss_pred CC-cccccceeeee-------ecc----hhhhhhccCeEEEEec-CCccc-----------cCchhhcc--ccceeeEEe
Confidence 43 3 33 45677 332 3444445789999998 33311 11222222 356888889
Q ss_pred EeecCCCcEEEE-----EECCCcEEEEECCCCeEEEE--EecCCcceEEEEEeeccCCCCcEEEEE--e-------C--C
Q 000654 141 LKVCNGNRSLAI-----GCSDNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIASG--T-------I--Y 202 (1371)
Q Consensus 141 sp~~~dg~~Lat-----gs~Dg~I~vWd~~~~~~~~~--l~~~~~~~v~s~~~~~~s~d~~~Lasg--s-------~--d 202 (1371)
+|.. ++..||. .+.++++++|.+..+..+.+ +....++. +.+ .+.+.+|+.- + . .
T Consensus 182 sP~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q---LkW---~~~g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 182 SPEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ---LKW---QVLGKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred cCCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE---EEE---ecCCceEEEEEEEeeecccceecc
Confidence 8822 3444543 46688999999986665433 22222221 222 2233333221 1 1 1
Q ss_pred CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEe--CCCcE
Q 000654 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS--DDRSA 280 (1371)
Q Consensus 203 g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s--~Dg~V 280 (1371)
.++.++++. ...+....+-.++|+...|.|.++.+++.+ .+-.+
T Consensus 255 snLyl~~~~----------------------------------e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~ 300 (561)
T COG5354 255 SNLYLLRIT----------------------------------ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASV 300 (561)
T ss_pred ceEEEEeec----------------------------------ccccceeccccccceeeeecccCCceeEEecccccce
Confidence 344555544 122222225679999999999988766544 67889
Q ss_pred EEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCC---CeEEEEeCCCcEEE--EEeeccCcCEEE
Q 000654 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLK--MIKEHIGRGIWR 353 (1371)
Q Consensus 281 riWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~D---g~I~VWd~~g~~l~--~l~~h~~~~V~s 353 (1371)
.++|++.. . .+......=..+-|+ .++++.++-| |.+-+||..++.+. .+.+.. .+-
T Consensus 301 s~~~lr~N-l------------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n---~s~ 364 (561)
T COG5354 301 SVFDLRGN-L------------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN---TSY 364 (561)
T ss_pred eecccccc-e------------EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC---ceE
Confidence 99998875 2 444445555566776 5788888765 67999999554333 454443 456
Q ss_pred EEEcCCCCEEEEEE------CCCcEEEEEcCCC
Q 000654 354 CLYDSLSSLLVTAG------FDSAIKVHQFQAF 380 (1371)
Q Consensus 354 l~~spdg~~L~Tgg------~Dg~I~lwdl~~~ 380 (1371)
+.|+||+.++.+.- .|..++|||+.+.
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 78999999877643 3889999999654
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.64 E-value=0.00036 Score=82.98 Aligned_cols=285 Identities=15% Similarity=0.151 Sum_probs=170.3
Q ss_pred CccEEEEeC--CCCc--------ccCcEEEEEEEecCCCCCCCCEEEEEeC-----CcEEEEECCC--CeE--EEEEEee
Q 000654 3 KKDLSEWRL--DVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGSG-----SQVLLYDLEA--GTL--IRPFQVF 63 (1371)
Q Consensus 3 D~tV~iWdl--~~~~--------h~~~Vtavafs~~pd~~~~~~llaaG~d-----g~I~Iwd~~s--g~~--l~~~~~~ 63 (1371)
.+.|.+|++ .+++ ....-+.|+++ |+ +++|.+... +.|..|++.. +++ +.+...
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~--~~----~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~- 84 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVS--PD----GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS- 84 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSSECCEEE---TT----SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEE--eC----CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-
Confidence 367888888 4443 12335788898 88 677777642 6899999865 443 333332
Q ss_pred cCccEEEEEeeccccccCCCCcceeeEEEEE-CCCeEEEEEeccCCCCCCCCCCccceeeeeeeec----------cCCC
Q 000654 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL----------PRLS 132 (1371)
Q Consensus 64 ~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~-gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l----------~gh~ 132 (1371)
.+.....++++ |+++ .++++. ++++|.++++.... .+ ....... +.-.
T Consensus 85 ~g~~p~~i~~~-------~~g~---~l~vany~~g~v~v~~l~~~g----------~l-~~~~~~~~~~g~g~~~~rq~~ 143 (345)
T PF10282_consen 85 GGSSPCHIAVD-------PDGR---FLYVANYGGGSVSVFPLDDDG----------SL-GEVVQTVRHEGSGPNPDRQEG 143 (345)
T ss_dssp SSSCEEEEEEC-------TTSS---EEEEEETTTTEEEEEEECTTS----------EE-EEEEEEEESEEEESSTTTTSS
T ss_pred CCCCcEEEEEe-------cCCC---EEEEEEccCCeEEEEEccCCc----------cc-ceeeeecccCCCCCccccccc
Confidence 34456778888 8883 444443 58999999998632 00 1111111 1223
Q ss_pred CcEEEEEEEeecCCCcEEEEEE-CCCcEEEEECCCCe--E--EEEEecCCcceEEEEEeeccCCCCcEEEE-EeCCCeEE
Q 000654 133 HWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSS--I--ILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEII 206 (1371)
Q Consensus 133 ~~I~~v~fsp~~~dg~~Latgs-~Dg~I~vWd~~~~~--~--~~~l~~~~~~~v~s~~~~~~s~d~~~Las-gs~dg~I~ 206 (1371)
...+++.|+| +++++++.. ....|.+|++.... . ...+..+.+.-...+.| ++++.+++. ...++.|.
T Consensus 144 ~h~H~v~~~p---dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f---~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 144 PHPHQVVFSP---DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF---SPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp TCEEEEEE-T---TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE----TTSSEEEEEETTTTEEE
T ss_pred ccceeEEECC---CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE---cCCcCEEEEecCCCCcEE
Confidence 4688999999 999877653 34579999997654 3 23445555555667777 677877755 55678899
Q ss_pred EEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEec----c--cCCEEEEEEcCCCCEEEEEe-CCCc
Q 000654 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG----H--EGSIFRIEWSSCGSKLVSVS-DDRS 279 (1371)
Q Consensus 207 vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g----H--~~~I~~v~~spdg~~LaS~s-~Dg~ 279 (1371)
++++.... + ....+..+.. . ......|+++||+++|.... ...+
T Consensus 218 v~~~~~~~--------------------g---------~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 218 VFDYDPSD--------------------G---------SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp EEEEETTT--------------------T---------EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred EEeecccC--------------------C---------ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 99987110 0 1112222221 1 12678899999999876644 5678
Q ss_pred EEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEe-CCCeEEEEeC---CCcEEEEEeeccCcCEEE
Q 000654 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGKQLKMIKEHIGRGIWR 353 (1371)
Q Consensus 280 VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs-~Dg~I~VWd~---~g~~l~~l~~h~~~~V~s 353 (1371)
|.+|++...... ++.+. .........+.++++ +++|+++. .++.|.+|++ +|.+...-.........|
T Consensus 269 I~vf~~d~~~g~----l~~~~--~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 269 ISVFDLDPATGT----LTLVQ--TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp EEEEEECTTTTT----EEEEE--EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEE
T ss_pred EEEEEEecCCCc----eEEEE--EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEE
Confidence 999999543110 33333 333334457888886 67887776 5678999987 444433332222224566
Q ss_pred EEE
Q 000654 354 CLY 356 (1371)
Q Consensus 354 l~~ 356 (1371)
|.|
T Consensus 343 i~f 345 (345)
T PF10282_consen 343 IVF 345 (345)
T ss_dssp EEE
T ss_pred EeC
Confidence 665
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=2.7e-05 Score=92.36 Aligned_cols=174 Identities=17% Similarity=0.168 Sum_probs=124.5
Q ss_pred CCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecc
Q 000654 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1371)
Q Consensus 176 ~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1371)
|....+.++.+ +.+..+++.|+.||.++|-.+.+..-.....+ . ........-+.+.||
T Consensus 12 PnnvkL~c~~W---Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-l-----------------aa~snLsmNQtLeGH 70 (1189)
T KOG2041|consen 12 PNNVKLHCAEW---NKESGYIACGGADGLLKVLKLGTDTTDLNKSG-L-----------------AAASNLSMNQTLEGH 70 (1189)
T ss_pred CCCceEEEEEE---cccCCeEEeccccceeEEEEccccCCcccccc-c-----------------ccccccchhhhhccC
Confidence 33333445554 66788999999999999999873211000000 0 000122334578899
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEE
Q 000654 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVW 333 (1371)
Q Consensus 256 ~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VW 333 (1371)
.+.|.-+.|+.+.+.|-|...+|.|.+|-+..+.- .+++ .-....+.|.+++|. +..++..-+||.|.|=
T Consensus 71 ~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW-----~EEM---iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 71 NASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW-----CEEM---INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG 142 (1189)
T ss_pred cceEEEEEeccccccccccCCCceEEEEeeecccH-----HHHH---hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence 99999999999999999999999999999987654 2211 333455678899997 7899999999999888
Q ss_pred eCCCcEEE--EEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC
Q 000654 334 GSDGKQLK--MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (1371)
Q Consensus 334 d~~g~~l~--~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~ 381 (1371)
.++|..+. .+++. ....+.|++|.+.++.+-.+|.+.++|.++..
T Consensus 143 svdGNRIwgKeLkg~---~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF 189 (1189)
T KOG2041|consen 143 SVDGNRIWGKELKGQ---LLAHVLWSEDLEQALFKKANGETHLYDNQGNF 189 (1189)
T ss_pred eeccceecchhcchh---eccceeecccHHHHHhhhcCCcEEEecccccH
Confidence 88776553 23332 24578899999988888889999999987643
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.60 E-value=6e-05 Score=87.92 Aligned_cols=266 Identities=12% Similarity=0.016 Sum_probs=159.4
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEE-E---------CCCeEEEEEeccCCCCCCC
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-F---------GEKRVKLFELNFELSPNSQ 113 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~-~---------gd~sV~vwdl~~~~~~~~~ 113 (1371)
+.|.+.|..+++.+.++..... -+++ ++ |||+ .+.++ . .+..|.+||..+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~--P~~~-~s-------pDg~---~lyva~~~~~R~~~G~~~d~V~v~D~~t~------ 87 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL--PNPV-VA-------SDGS---FFAHASTVYSRIARGKRTDYVEVIDPQTH------ 87 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC--Ccee-EC-------CCCC---EEEEEeccccccccCCCCCEEEEEECccC------
Confidence 7999999999999999986443 4555 88 9985 44444 3 3689999999873
Q ss_pred CCCccceeeeeeeeccC----C---CCcEEEEEEEeecCCCcEEEEEE-C-CCcEEEEECCCCeEEEEEecCCcceEEEE
Q 000654 114 YQPETCVNLSLVQSLPR----L---SHWVFDVCFLKVCNGNRSLAIGC-S-DNSIRVWDISNSSIILEVHSPERCLLYSM 184 (1371)
Q Consensus 114 ~~~~~~v~~~~~~~l~g----h---~~~I~~v~fsp~~~dg~~Latgs-~-Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~ 184 (1371)
+.+..+.- + ...-..++++| ||++|++.. . ++.|.+.|+.+++.+.++..+....+|..
T Consensus 88 ---------~~~~~i~~p~~p~~~~~~~~~~~~ls~---dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t 155 (352)
T TIGR02658 88 ---------LPIADIELPEGPRFLVGTYPWMTSLTP---DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPT 155 (352)
T ss_pred ---------cEEeEEccCCCchhhccCccceEEECC---CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEe
Confidence 33333321 1 12344788899 999888765 3 78999999999999999987765555542
Q ss_pred EeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEE-E
Q 000654 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI-E 263 (1371)
Q Consensus 185 ~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v-~ 263 (1371)
+.+... +-+.||......+... ++.. ......+.+-..+++.= .
T Consensus 156 -----~e~~~~--~~~~Dg~~~~v~~d~~---------------------g~~~-------~~~~~vf~~~~~~v~~rP~ 200 (352)
T TIGR02658 156 -----ANDTFF--MHCRDGSLAKVGYGTK---------------------GNPK-------IKPTEVFHPEDEYLINHPA 200 (352)
T ss_pred -----cCCccE--EEeecCceEEEEecCC---------------------CceE-------EeeeeeecCCccccccCCc
Confidence 222222 2234555555444310 0000 00000111100111100 3
Q ss_pred EcC-CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEe--ecCCccEEEEEEc--CCEEEEEe----------CCC
Q 000654 264 WSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL--YGHNARVWDCCLT--DSFIITAG----------EDC 328 (1371)
Q Consensus 264 ~sp-dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~--~gh~~~I~~l~~s--~~~L~Sgs----------~Dg 328 (1371)
|.+ +++++..... |+|.+-|+.............+..... .-..+.+.-++++ ++.++.+. ..+
T Consensus 201 ~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 201 YSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred eEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 455 7777766655 999999976643311000111100000 0022233347887 45665532 124
Q ss_pred eEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCC-EEEEEE-CCCcEEEEEcC
Q 000654 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQ 378 (1371)
Q Consensus 329 ~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~-~L~Tgg-~Dg~I~lwdl~ 378 (1371)
.|.++|. +++.+..+..-. .++.++++||++ +|++.. .++.|.++|..
T Consensus 280 ~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred EEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 7999999 788888776433 599999999999 877666 58889999984
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.60 E-value=1.1e-05 Score=87.29 Aligned_cols=111 Identities=17% Similarity=0.270 Sum_probs=89.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeC
Q 000654 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (1371)
Q Consensus 259 I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~ 335 (1371)
..++.|++.+..+++.-.+|.+.+-+...... +.+ ..+.+|..++|.+.|+ ++.+++|+.|+.+..||+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l------e~v--q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVL------EKV--QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeee------eec--ccccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 45678899999999999999988655544332 222 2788999999999998 789999999999999999
Q ss_pred --CCcEEEE-EeeccCcCEEEEEEcC-CCCEEEEEECCCcEEEEEcC
Q 000654 336 --DGKQLKM-IKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 336 --~g~~l~~-l~~h~~~~V~sl~~sp-dg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.++.+.. -+.|.. +|.+|.-+| .+.+|+||+.|-.|++||.+
T Consensus 196 R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred cCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceeeeehh
Confidence 4555544 566777 799998875 46699999999999999995
No 257
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.57 E-value=3e-07 Score=108.98 Aligned_cols=287 Identities=17% Similarity=0.228 Sum_probs=181.4
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCC-e---EEEEEEeecCccEEEEEeeccccccCCCCcceeeEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG-T---LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg-~---~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~l 91 (1371)
-.+++.++.++ |. |+-++.++---+.+-|+... . .++.+. .-.|-.++|++. |.- +.-+
T Consensus 23 v~~~~~a~si~--p~----grdi~lAsr~gl~i~dld~p~~ppr~l~h~t---pw~vad~qws~h-----~a~---~~wi 85 (1081)
T KOG0309|consen 23 VDGGFNAVSIN--PS----GRDIVLASRQGLYIIDLDDPFTPPRWLHHIT---PWQVADVQWSPH-----PAK---PYWI 85 (1081)
T ss_pred ecCcccceeec--cc----cchhhhhhhcCeEEEeccCCCCCceeeeccC---cchhcceecccC-----CCC---ceeE
Confidence 45778999999 87 66666666544667777542 2 222222 124666778843 221 2677
Q ss_pred EEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE-E
Q 000654 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-I 170 (1371)
Q Consensus 92 a~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~-~ 170 (1371)
+.++...-.+|++.... .......+.||...|+++-|+| .....|++++.|-.+..||+.+... +
T Consensus 86 Vsts~qkaiiwnlA~ss------------~~aIef~lhghsraitd~n~~~--q~pdVlatcsvdt~vh~wd~rSp~~p~ 151 (1081)
T KOG0309|consen 86 VSTSNQKAIIWNLAKSS------------SNAIEFVLHGHSRAITDINFNP--QHPDVLATCSVDTYVHAWDMRSPHRPF 151 (1081)
T ss_pred EecCcchhhhhhhhcCC------------ccceEEEEecCccceeccccCC--CCCcceeeccccccceeeeccCCCcce
Confidence 77788888899998644 1334456779999999999998 4567899999999999999987543 2
Q ss_pred EEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEE
Q 000654 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1371)
Q Consensus 171 ~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~ 250 (1371)
..... -......+.+ .-.++..+| .+..+.|.+||.+ +...++.
T Consensus 152 ys~~~-w~s~asqVkw--nyk~p~vla-sshg~~i~vwd~r--------------------------------~gs~pl~ 195 (1081)
T KOG0309|consen 152 YSTSS-WRSAASQVKW--NYKDPNVLA-SSHGNDIFVWDLR--------------------------------KGSTPLC 195 (1081)
T ss_pred eeeec-ccccCceeee--cccCcchhh-hccCCceEEEecc--------------------------------CCCcceE
Confidence 22111 0111111222 112333333 3446778888887 3566788
Q ss_pred EEecccCCEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC---CEEE----
Q 000654 251 RLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFII---- 322 (1371)
Q Consensus 251 ~l~gH~~~I~~v~~sp-dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~---~~L~---- 322 (1371)
.+++|...|..+.|.. ....+.+++.|++|+.||....... .+ .......+||--++.| .+++
T Consensus 196 s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e----~~-----~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 196 SLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE----SK-----RTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred EecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc----cc-----eeccccCcceeccccccCceeEecccc
Confidence 8999999999999976 3456889999999999998764331 11 2223344555554441 1111
Q ss_pred ------EEeCCCeEEEEeC--CCcEEEEEeeccCcCEEEEEE--------cCCC--CEEEEEECCCcEEEEEcCC
Q 000654 323 ------TAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLY--------DSLS--SLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 323 ------Sgs~Dg~I~VWd~--~g~~l~~l~~h~~~~V~sl~~--------spdg--~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
---.+..-..|+. ..+++..|.+|... |....| ..|. -.|+|=+.|..+|+|.+..
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~-V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV-VLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchH-HHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 1111223344555 34689999999873 544333 2222 2799999999999999854
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.56 E-value=2.9e-05 Score=93.75 Aligned_cols=287 Identities=9% Similarity=0.061 Sum_probs=161.6
Q ss_pred CCccEEEEeCCCCcc------cCcE-EEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEe
Q 000654 2 GKKDLSEWRLDVGQY------LGEI-SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1371)
Q Consensus 2 ~D~tV~iWdl~~~~h------~~~V-tavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~ 73 (1371)
.++.|.-+|..+|+. ...+ ...+.. +..++++. ++.|..+|..+|+++.+.... + .+.+.-.
T Consensus 73 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~--------~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~-~~~~~p~ 142 (377)
T TIGR03300 73 ADGTVVALDAETGKRLWRVDLDERLSGGVGAD--------GGLVFVGTEKGEVIALDAEDGKELWRAKLS-S-EVLSPPL 142 (377)
T ss_pred CCCeEEEEEccCCcEeeeecCCCCcccceEEc--------CCEEEEEcCCCEEEEEECCCCcEeeeeccC-c-eeecCCE
Confidence 456788888877761 1222 122222 34555554 799999999999998776532 2 2221111
Q ss_pred eccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEE--EEeecCCCcEEE
Q 000654 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC--FLKVCNGNRSLA 151 (1371)
Q Consensus 74 s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~--fsp~~~dg~~La 151 (1371)
. .++ .+++..+++.+..||.+++. .+-........+ .+. -+|.- .+..++
T Consensus 143 v-------~~~----~v~v~~~~g~l~a~d~~tG~---------------~~W~~~~~~~~~-~~~~~~sp~~-~~~~v~ 194 (377)
T TIGR03300 143 V-------ANG----LVVVRTNDGRLTALDAATGE---------------RLWTYSRVTPAL-TLRGSASPVI-ADGGVL 194 (377)
T ss_pred E-------ECC----EEEEECCCCeEEEEEcCCCc---------------eeeEEccCCCce-eecCCCCCEE-ECCEEE
Confidence 1 222 56666678999999987643 111111111100 000 01100 124677
Q ss_pred EEECCCcEEEEECCCCeEEEEEec--CCcc-eEEEEEeeccC--CCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCC
Q 000654 152 IGCSDNSIRVWDISNSSIILEVHS--PERC-LLYSMKLWGDN--LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1371)
Q Consensus 152 tgs~Dg~I~vWd~~~~~~~~~l~~--~~~~-~v~s~~~~~~s--~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s 226 (1371)
.+..++.+..+|..+|+.+.+... +... ....+.....+ ..+..++.++.+|.+..||..++
T Consensus 195 ~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG------------- 261 (377)
T TIGR03300 195 VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG------------- 261 (377)
T ss_pred EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-------------
Confidence 788889999999999987654321 1100 00000000000 12457788888999999998722
Q ss_pred CCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeec
Q 000654 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1371)
Q Consensus 227 ~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~g 306 (1371)
+.+-... ... .... ..++..++.++.||.+..+|..+++.. .+ .. .+ +
T Consensus 262 --------------------~~~W~~~-~~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~----W~-~~--~~-~ 309 (377)
T TIGR03300 262 --------------------RVLWKRD-ASS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSEL----WK-ND--EL-K 309 (377)
T ss_pred --------------------cEEEeec-cCC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEE----Ec-cc--cc-c
Confidence 2221111 001 1111 124667888889999999999877541 00 00 01 1
Q ss_pred CCccEEEEEEcCCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEE-EEEcCCCCEEEEEECCCcEEEE
Q 000654 307 HNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR-CLYDSLSSLLVTAGFDSAIKVH 375 (1371)
Q Consensus 307 h~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~s-l~~spdg~~L~Tgg~Dg~I~lw 375 (1371)
..........+..|++++.+|.+.++|. +|+.+..++.+.. ++++ .++. + ..|+.++.||.|..|
T Consensus 310 -~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~-~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 310 -YRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS-GIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred -CCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-ccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 1112222335789999999999999999 8999988887664 2333 2333 3 357888999988765
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=0.00011 Score=86.32 Aligned_cols=266 Identities=11% Similarity=0.109 Sum_probs=148.6
Q ss_pred EEEEEeCCcEEEEECCCCeEEEEEEeec--CccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCC
Q 000654 37 FLLAGSGSQVLLYDLEAGTLIRPFQVFH--GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1371)
Q Consensus 37 llaaG~dg~I~Iwd~~sg~~l~~~~~~~--~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~ 114 (1371)
.++.-+.-.+.+|+....+.......+. ...+...+++ ++| .+++.+.+..++|++.....
T Consensus 4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S-------~~G----~lfA~~~~~~v~i~~~~~~~------ 66 (566)
T KOG2315|consen 4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYS-------NNG----RLFAYSDNQVVKVFEIATLK------ 66 (566)
T ss_pred eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEc-------CCC----cEEEEEcCCeEEEEEccCCc------
Confidence 3444445567788765432222222121 2235566677 888 79999999999999987521
Q ss_pred CCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEE-----EC-----CCcEEEEECCCCeEEEEEecCCcceEEEE
Q 000654 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-----CS-----DNSIRVWDISNSSIILEVHSPERCLLYSM 184 (1371)
Q Consensus 115 ~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latg-----s~-----Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~ 184 (1371)
.+.+... ..+.++.|+| -+.+|.|= .. .-.+++|++.++.....+....... |..
T Consensus 67 ---------~~lt~~~--~~~~~L~fSP---~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~ 131 (566)
T KOG2315|consen 67 ---------VVLCVEL--KKTYDLLFSP---KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVP 131 (566)
T ss_pred ---------EEEEecc--ceeeeeeecc---cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-ccc
Confidence 1111111 2689999999 88887651 11 2347799998865555444332221 344
Q ss_pred EeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEE
Q 000654 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEW 264 (1371)
Q Consensus 185 ~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~ 264 (1371)
.| +.|. .+++=-..+.+.+|+... .....+.+ |...|....+
T Consensus 132 qf---s~dE-sl~arlv~nev~f~~~~~--------------------------------f~~~~~kl--~~~~i~~f~l 173 (566)
T KOG2315|consen 132 QF---SIDE-SLAARLVSNEVQFYDLGS--------------------------------FKTIQHKL--SVSGITMLSL 173 (566)
T ss_pred cc---ccch-hhhhhhhcceEEEEecCC--------------------------------ccceeeee--eccceeeEEe
Confidence 44 4443 333333457899998871 11122222 5677888889
Q ss_pred cCCC--CEEEE-----EeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--C-CEEEEE--eCC-----
Q 000654 265 SSCG--SKLVS-----VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--D-SFIITA--GED----- 327 (1371)
Q Consensus 265 spdg--~~LaS-----~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~-~~L~Sg--s~D----- 327 (1371)
+|.+ ..+|+ .+.-+.||||........ +.+....++. ..=..+.|. + .+|+.+ .-|
T Consensus 174 Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~-----~~~a~ksFFk--adkvqm~WN~~gt~LLvLastdVDktn~S 246 (566)
T KOG2315|consen 174 SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH-----QPVANKSFFK--ADKVQMKWNKLGTALLVLASTDVDKTNAS 246 (566)
T ss_pred cCCCCCceEEEEccCCCCCCcEEEEecccccccc-----chhhhccccc--cceeEEEeccCCceEEEEEEEeecCCCcc
Confidence 8863 34554 455678999998743221 1110001111 111223443 1 223222 222
Q ss_pred ----CeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEE--EECCCcEEEEEcCCC
Q 000654 328 ----CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVT--AGFDSAIKVHQFQAF 380 (1371)
Q Consensus 328 ----g~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~T--gg~Dg~I~lwdl~~~ 380 (1371)
.++.+.+++|.....--.-.+ +|.++.|+|+++-++. |-.-..+.|||+++.
T Consensus 247 YYGEq~Lyll~t~g~s~~V~L~k~G-PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~ 304 (566)
T KOG2315|consen 247 YYGEQTLYLLATQGESVSVPLLKEG-PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK 304 (566)
T ss_pred ccccceEEEEEecCceEEEecCCCC-CceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence 357777776543332222345 7999999999975544 445778899998653
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.51 E-value=6.2e-07 Score=115.49 Aligned_cols=191 Identities=15% Similarity=0.170 Sum_probs=140.1
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
+...|.++.-+ |. ..+.++|+ ||.+++|.+..++.+..++.....+|+.+.|+ ..|+ ..-++-
T Consensus 2207 ~v~~v~r~~sH--p~----~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~-------~qGn---k~~i~d 2270 (2439)
T KOG1064|consen 2207 PVENVRRMTSH--PS----DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN-------HQGN---KFGIVD 2270 (2439)
T ss_pred ccCceeeecCC--CC----CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc-------ccCC---ceeeec
Confidence 44556777766 65 57777777 79999999999998888876555689999999 7774 666777
Q ss_pred CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC---CCcEEEEECCCCeEEE
Q 000654 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIIL 171 (1371)
Q Consensus 95 gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~---Dg~I~vWd~~~~~~~~ 171 (1371)
+||.+.+|.+.. ++....+.|.....++.|.. ..+++++. ++.+.+||..-.....
T Consensus 2271 ~dg~l~l~q~~p----------------k~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2271 GDGDLSLWQASP----------------KPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred cCCceeecccCC----------------cceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccc
Confidence 899999999873 44556678988999999975 56777653 7889999975332221
Q ss_pred EE-ecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEE
Q 000654 172 EV-HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1371)
Q Consensus 172 ~l-~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~ 250 (1371)
-+ .+|.. .+..+.+ .|...+|++|+.+|.|++||++ ..+.++
T Consensus 2330 ~v~~~H~~-gaT~l~~---~P~~qllisggr~G~v~l~D~r---------------------------------qrql~h 2372 (2439)
T KOG1064|consen 2330 LVHTCHDG-GATVLAY---APKHQLLISGGRKGEVCLFDIR---------------------------------QRQLRH 2372 (2439)
T ss_pred eeeeecCC-CceEEEE---cCcceEEEecCCcCcEEEeehH---------------------------------HHHHHH
Confidence 12 23322 2344555 5788999999999999999998 334444
Q ss_pred EEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 000654 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1371)
Q Consensus 251 ~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~ 290 (1371)
.+.. +. ...++++++..|.++||++.....
T Consensus 2373 ~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2373 TFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred Hhhh---------hh-hhheeeccCcccceEEEEccccch
Confidence 3332 33 557899999999999999988654
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.49 E-value=5.5e-06 Score=97.59 Aligned_cols=187 Identities=16% Similarity=0.230 Sum_probs=142.0
Q ss_pred CCcEEEEEECCCcEEEEECCCCeEEEEEecC----Ccce--EEEEEeec--------------cCCCCcEEEEEeCCCeE
Q 000654 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSP----ERCL--LYSMKLWG--------------DNLEALRIASGTIYNEI 205 (1371)
Q Consensus 146 dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~----~~~~--v~s~~~~~--------------~s~d~~~Lasgs~dg~I 205 (1371)
...++|....||.+++|+..+++....+... ..|. .+.+.. . -+.+...++-|+..|.|
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~-~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSA-DYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEe-ccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 5678999999999999999998876665421 1222 222111 1 12345577789999999
Q ss_pred EEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe--cccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 000654 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1371)
Q Consensus 206 ~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~--gH~~~I~~v~~spdg~~LaS~s~Dg~VriW 283 (1371)
.+++.. .++....+. .|.+.|.++.++.+-..|.|++.|+.+-.|
T Consensus 83 ~~ys~~---------------------------------~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~ 129 (541)
T KOG4547|consen 83 LLYSVA---------------------------------GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYI 129 (541)
T ss_pred EEEEec---------------------------------CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEE
Confidence 999988 344444443 699999999999999999999999999999
Q ss_pred EccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCC-
Q 000654 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL- 359 (1371)
Q Consensus 284 dl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spd- 359 (1371)
+...... . ..+..-+..+.++++++ ..+++|+ +.|++||+ +++.+.+|.+|.+ +|.++.|-.+
T Consensus 130 ~~~~~~~-----~-----~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~ 196 (541)
T KOG4547|consen 130 LEKEKVI-----I-----RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLI 196 (541)
T ss_pred eccccee-----e-----eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEec
Confidence 9988765 2 26667777888999985 4888776 67999999 8899999999999 7999999765
Q ss_pred ----CCEEEE-EECCCcEEEEEcCC
Q 000654 360 ----SSLLVT-AGFDSAIKVHQFQA 379 (1371)
Q Consensus 360 ----g~~L~T-gg~Dg~I~lwdl~~ 379 (1371)
|.++++ ...+..+.+|-+.+
T Consensus 197 ~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 197 DGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccccceeeeccccccceeEEEEEc
Confidence 565554 55577788887743
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.48 E-value=0.0013 Score=74.28 Aligned_cols=267 Identities=11% Similarity=0.144 Sum_probs=160.9
Q ss_pred EEEEEC---CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC---CCcEEEEE
Q 000654 90 EVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWD 163 (1371)
Q Consensus 90 ~la~~g---d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~---Dg~I~vWd 163 (1371)
++.++. ++-|.+|++.+... ....+ .+-.+.+.++-++|+| +++.|.++-. +|.|.-|.
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g-----------~l~~~-~~v~~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay~ 70 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTG-----------ELSLL-QLVAELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAYR 70 (346)
T ss_pred EEeeecccCCCceEEEEEeCccc-----------ccchh-hhccccCCCceEEECC---CCCEEEEEEecCCcCcEEEEE
Confidence 444554 67899999985431 01222 2224567788899999 9988988755 46777777
Q ss_pred CCC--CeEE--EEEecCCcceEEEEEeeccCCCCcEEEEEe-CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceee
Q 000654 164 ISN--SSII--LEVHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1371)
Q Consensus 164 ~~~--~~~~--~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs-~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~ 238 (1371)
+.. |+.. .......... ..+++ ++++.+|+++. ..|.|.++-++..-
T Consensus 71 iD~~~G~Lt~ln~~~~~g~~p-~yvsv---d~~g~~vf~AnY~~g~v~v~p~~~dG------------------------ 122 (346)
T COG2706 71 IDPDDGRLTFLNRQTLPGSPP-CYVSV---DEDGRFVFVANYHSGSVSVYPLQADG------------------------ 122 (346)
T ss_pred EcCCCCeEEEeeccccCCCCC-eEEEE---CCCCCEEEEEEccCceEEEEEcccCC------------------------
Confidence 654 5542 2222222222 22333 78898888875 45889999886210
Q ss_pred ecccccceeeEEEEecccCC----------EEEEEEcCCCCEEEEEe--CCCcEEEEEccCCcccCCCCceeeeceEeec
Q 000654 239 LQDQQHTAVNLFRLVGHEGS----------IFRIEWSSCGSKLVSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1371)
Q Consensus 239 i~~~~~~~~~~~~l~gH~~~----------I~~v~~spdg~~LaS~s--~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~g 306 (1371)
.......+..|.+. +....+.|++++|+++. .| .|.+|++..+... +..+ ....
T Consensus 123 ------~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~------~~~~-~~v~ 188 (346)
T COG2706 123 ------SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLT------PADP-AEVK 188 (346)
T ss_pred ------ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccc------cccc-cccC
Confidence 00011111223333 88899999999998875 34 6899999976552 2221 2224
Q ss_pred CCccEEEEEEcC--CEEEEE-eCCCeEEEEeCCC--cEEEEEeec--------cCcCEEEEEEcCCCCEEEEEEC-CCcE
Q 000654 307 HNARVWDCCLTD--SFIITA-GEDCTCRVWGSDG--KQLKMIKEH--------IGRGIWRCLYDSLSSLLVTAGF-DSAI 372 (1371)
Q Consensus 307 h~~~I~~l~~s~--~~L~Sg-s~Dg~I~VWd~~g--~~l~~l~~h--------~~~~V~sl~~spdg~~L~Tgg~-Dg~I 372 (1371)
.......+.|++ ++.... --+++|.+|.++. ..+..++.+ .....-.|.+++||++|.++.+ ...|
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 556678899984 555544 4589999999933 333333321 1224667888999999988765 4477
Q ss_pred EEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEc
Q 000654 373 KVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (1371)
Q Consensus 373 ~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~ 438 (1371)
.++.+.. .++.+ .+ +..+..+...-|.+.|++.+++|++.+
T Consensus 269 ~~f~V~~----------------~~g~L-~~--------~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 269 AVFSVDP----------------DGGKL-EL--------VGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred EEEEEcC----------------CCCEE-EE--------EEEeccCCcCCccceeCCCCCEEEEEc
Confidence 7777731 11111 11 111112223468889999998887764
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.47 E-value=0.00074 Score=80.34 Aligned_cols=274 Identities=12% Similarity=0.133 Sum_probs=166.3
Q ss_pred CcEEEEEC--CCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC----CCeEEEEEeccCCCCCCCCCCc
Q 000654 44 SQVLLYDL--EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPE 117 (1371)
Q Consensus 44 g~I~Iwd~--~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g----d~sV~vwdl~~~~~~~~~~~~~ 117 (1371)
+.|.+|++ +++++.............-++++ |+++ .+.++.. ++.|..|++....
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~-------~~~~---~LY~~~e~~~~~g~v~~~~i~~~~--------- 73 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVS-------PDGR---RLYVVNEGSGDSGGVSSYRIDPDT--------- 73 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE--------TTSS---EEEEEETTSSTTTEEEEEEEETTT---------
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEE-------eCCC---EEEEEEccccCCCCEEEEEECCCc---------
Confidence 78888887 66665332222233356677888 8874 5666655 4799999998631
Q ss_pred cceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEE-CCCcEEEEECCC-CeEEEE---Ee----c-----CCcceEEE
Q 000654 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISN-SSIILE---VH----S-----PERCLLYS 183 (1371)
Q Consensus 118 ~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs-~Dg~I~vWd~~~-~~~~~~---l~----~-----~~~~~v~s 183 (1371)
-.++.+............++++| ++++|+++. .+|+|.++++.. +..... +. + ........
T Consensus 74 --g~L~~~~~~~~~g~~p~~i~~~~---~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 74 --GTLTLLNSVPSGGSSPCHIAVDP---DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp --TEEEEEEEEEESSSCEEEEEECT---TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred --ceeEEeeeeccCCCCcEEEEEec---CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 02555555543445667799998 999888876 489999999976 444322 11 1 12334555
Q ss_pred EEeeccCCCCcEEEEEe-CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe-cccCCEEE
Q 000654 184 MKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFR 261 (1371)
Q Consensus 184 ~~~~~~s~d~~~Lasgs-~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~-gH~~~I~~ 261 (1371)
+.+ +|++.+|++.. ....|.+|++..... .......+. ........
T Consensus 149 v~~---~pdg~~v~v~dlG~D~v~~~~~~~~~~-----------------------------~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 149 VVF---SPDGRFVYVPDLGADRVYVYDIDDDTG-----------------------------KLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp EEE----TTSSEEEEEETTTTEEEEEEE-TTS------------------------------TEEEEEEEECSTTSSEEE
T ss_pred EEE---CCCCCEEEEEecCCCEEEEEEEeCCCc-----------------------------eEEEeeccccccCCCCcE
Confidence 555 78888877754 346788998872110 011122222 33456789
Q ss_pred EEEcCCCCEEEEE-eCCCcEEEEEccCCcccCCCCceeeece-Eee-cC--CccEEEEEEc--CCEEEEE-eCCCeEEEE
Q 000654 262 IEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSS-VLY-GH--NARVWDCCLT--DSFIITA-GEDCTCRVW 333 (1371)
Q Consensus 262 v~~spdg~~LaS~-s~Dg~VriWdl~~~~~~~~~~~~~~~~~-~~~-gh--~~~I~~l~~s--~~~L~Sg-s~Dg~I~VW 333 (1371)
++|+|+++++... -.+++|.++++...... ++.+... .+. +. ......++++ +++|+.+ -...+|.+|
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGS----LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTE----EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCc----eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 9999999987554 55788999999832210 2222100 111 11 1257788888 5666655 456789999
Q ss_pred eCC---CcE--EEEEeeccCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEcC
Q 000654 334 GSD---GKQ--LKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQ 378 (1371)
Q Consensus 334 d~~---g~~--l~~l~~h~~~~V~sl~~spdg~~L~Tgg-~Dg~I~lwdl~ 378 (1371)
+++ |+. +..+... +..-+.++++|+|++|++++ .++.|.+|+++
T Consensus 273 ~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 982 333 3333332 33478999999999998877 46799999883
No 264
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.45 E-value=1.1e-06 Score=98.96 Aligned_cols=87 Identities=25% Similarity=0.382 Sum_probs=73.0
Q ss_pred EEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC-CEEEEEeCC
Q 000654 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGED 327 (1371)
Q Consensus 249 ~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~-~~L~Sgs~D 327 (1371)
...+.||...+..|+++||+++++++..|..||+-.+..... ++ ....||+.-|..++..+ ..|+++|.|
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~-----Ie----sfclGH~eFVS~isl~~~~~LlS~sGD 214 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV-----IE----SFCLGHKEFVSTISLTDNYLLLSGSGD 214 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-----hh----hhccccHhheeeeeeccCceeeecCCC
Confidence 344569999999999999999999999999999988765433 22 36689999999999984 567999999
Q ss_pred CeEEEEeC-CCcEEEEEe
Q 000654 328 CTCRVWGS-DGKQLKMIK 344 (1371)
Q Consensus 328 g~I~VWd~-~g~~l~~l~ 344 (1371)
+++++||+ +|+++.++.
T Consensus 215 ~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CcEEEEecccCCcccccc
Confidence 99999999 888876554
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.44 E-value=3.5e-05 Score=90.99 Aligned_cols=198 Identities=12% Similarity=0.150 Sum_probs=139.9
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEEee--cCccEEEEEeeccccccCC---------CCcceeeEEEEE--CCCeEE
Q 000654 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVF--HGIRLHGISCNFINCTEGS---------VSTRVTFEVALF--GEKRVK 100 (1371)
Q Consensus 35 ~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~--~~~~I~~i~~s~~~~~~~p---------dg~~~~~~la~~--gd~sV~ 100 (1371)
..|+|... ||.|+|||...+++..+|..- -.....+..|.-. ....| .+...+..+++- ..|.|.
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~-~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLS-ADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEE-eccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 45666665 799999999999887777531 1123444444311 00001 000011333333 379999
Q ss_pred EEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcce
Q 000654 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (1371)
Q Consensus 101 vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~ 180 (1371)
+|+...++ ....-.-.+|.+.|.++-++. +-..|.+++.|..+..|+...++.+....+... .
T Consensus 84 ~ys~~~g~-------------it~~~st~~h~~~v~~~~~~~---~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~ 146 (541)
T KOG4547|consen 84 LYSVAGGE-------------ITAKLSTDKHYGNVNEILDAQ---RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-L 146 (541)
T ss_pred EEEecCCe-------------EEEEEecCCCCCcceeeeccc---ccCceEecCCceeEEEEecccceeeeeeccCCC-c
Confidence 99987533 333334457999999999887 778999999999999999999988877765443 3
Q ss_pred EEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEE
Q 000654 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (1371)
Q Consensus 181 v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~ 260 (1371)
..++++ +||+..+++++ ++|++||++ +.+.+..|.||.++|.
T Consensus 147 ~~sl~i---s~D~~~l~~as--~~ik~~~~~---------------------------------~kevv~~ftgh~s~v~ 188 (541)
T KOG4547|consen 147 VSSLCI---SPDGKILLTAS--RQIKVLDIE---------------------------------TKEVVITFTGHGSPVR 188 (541)
T ss_pred cceEEE---cCCCCEEEecc--ceEEEEEcc---------------------------------CceEEEEecCCCcceE
Confidence 445555 78899999886 899999999 7888999999999999
Q ss_pred EEEEcCC-----CCEEEE-EeCCCcEEEEEccCC
Q 000654 261 RIEWSSC-----GSKLVS-VSDDRSARIWEVRAE 288 (1371)
Q Consensus 261 ~v~~spd-----g~~LaS-~s~Dg~VriWdl~~~ 288 (1371)
+++|..+ |.++++ ...++-+-+|-+...
T Consensus 189 t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 189 TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 9999876 565554 556777888887663
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.42 E-value=4e-05 Score=93.84 Aligned_cols=229 Identities=13% Similarity=0.089 Sum_probs=133.4
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC----CCeEEEEEeccCCCCCCCCCCccc
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPETC 119 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g----d~sV~vwdl~~~~~~~~~~~~~~~ 119 (1371)
..|.++|...+.. ..+..+.. .+...+|+ |||+ .++... ...|.+|++..+.
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~-~~~~p~~S-------pdg~----~la~~~~~~~~~~i~v~d~~~g~----------- 225 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSRE-PILSPAWS-------PDGQ----KLAYVSFESGKPEIYVQDLATGQ----------- 225 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCC-ceecccCC-------CCCC----EEEEEEcCCCCcEEEEEECCCCC-----------
Confidence 3688888754433 33443333 58888899 9983 444432 2579999987532
Q ss_pred eeeeeeeeccCCCCcEEEEEEEeecCCCcEEEE-EECCC--cEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEE
Q 000654 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1371)
Q Consensus 120 v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Lat-gs~Dg--~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~L 196 (1371)
.+.+. .+.+.+.+++|+| +++.|+. .+.++ .|.+||+.++... .+..... ......+ ++++..|
T Consensus 226 --~~~~~---~~~~~~~~~~~sp---Dg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~---s~dg~~l 292 (417)
T TIGR02800 226 --REKVA---SFPGMNGAPAFSP---DGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPG-IDTEPSW---SPDGKSI 292 (417)
T ss_pred --EEEee---cCCCCccceEECC---CCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCC-CCCCEEE---CCCCCEE
Confidence 22222 3445567789999 9887754 44443 5888999876543 2222211 1223333 6788877
Q ss_pred EEEeC-CC--eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEE
Q 000654 197 ASGTI-YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1371)
Q Consensus 197 asgs~-dg--~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS 273 (1371)
+..+. .+ .|.++++. ... ...+..+...+....|+|++++++.
T Consensus 293 ~~~s~~~g~~~iy~~d~~---------------------------------~~~-~~~l~~~~~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 293 AFTSDRGGSPQIYMMDAD---------------------------------GGE-VRRLTFRGGYNASPSWSPDGDLIAF 338 (417)
T ss_pred EEEECCCCCceEEEEECC---------------------------------CCC-EEEeecCCCCccCeEECCCCCEEEE
Confidence 66543 33 46666655 111 2234445566778899999999998
Q ss_pred EeCCC---cEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCC---eEEEEeCCCcEEEEEee
Q 000654 274 VSDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKE 345 (1371)
Q Consensus 274 ~s~Dg---~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg---~I~VWd~~g~~l~~l~~ 345 (1371)
++.+. .|.+||+.++.. + .+... .......|+ +++|+..+.++ .+.+.+.+|+....+..
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~------~-----~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGE------R-----VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred EEccCCceEEEEEeCCCCCe------E-----EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 88775 788888876432 1 11111 122334566 56676665543 35555666766666554
Q ss_pred ccCcCEEEEEE
Q 000654 346 HIGRGIWRCLY 356 (1371)
Q Consensus 346 h~~~~V~sl~~ 356 (1371)
+.+ .+..++|
T Consensus 407 ~~g-~~~~~~w 416 (417)
T TIGR02800 407 GNG-DVREPAW 416 (417)
T ss_pred CCC-CcCCCCC
Confidence 443 2444333
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.42 E-value=0.0088 Score=69.01 Aligned_cols=129 Identities=15% Similarity=0.087 Sum_probs=97.6
Q ss_pred CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCC-eEEEEeCCCcEEEEE
Q 000654 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC-TCRVWGSDGKQLKMI 343 (1371)
Q Consensus 267 dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg-~I~VWd~~g~~l~~l 343 (1371)
+|.+++..|. |.+.|.+...+.. ...+|..+|.-..+. ++-++.|..|| .+-|+|..+..++.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~------------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~ 397 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYS------------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI 397 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCee------------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe
Confidence 6788888876 4667766655433 456788888777775 67889999999 899999988778888
Q ss_pred eeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEE
Q 000654 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVR 423 (1371)
Q Consensus 344 ~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~ 423 (1371)
...-+ .|.++..+++|++++.+.....+.+.|++...++.+.. ...+-|.
T Consensus 398 e~~lg-~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-----------------------------S~~~lIt 447 (668)
T COG4946 398 EKDLG-NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-----------------------------SEYGLIT 447 (668)
T ss_pred eCCcc-ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-----------------------------cccceeE
Confidence 77777 59999999999999999888888888885433222111 1224588
Q ss_pred EEEEecCCcEEEEEc
Q 000654 424 CLHLTSEDTLYIATN 438 (1371)
Q Consensus 424 ~lafs~d~~llv~t~ 438 (1371)
.++|+|++++++-+-
T Consensus 448 df~~~~nsr~iAYaf 462 (668)
T COG4946 448 DFDWHPNSRWIAYAF 462 (668)
T ss_pred EEEEcCCceeEEEec
Confidence 999999999988763
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=0.0008 Score=75.81 Aligned_cols=262 Identities=16% Similarity=0.149 Sum_probs=161.1
Q ss_pred CccEEEEeCCCCc----------ccCcEEEEEEEecCCCCCCCCEEEEEe----CCcEEEEECCC--CeE--EEEEEeec
Q 000654 3 KKDLSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGS----GSQVLLYDLEA--GTL--IRPFQVFH 64 (1371)
Q Consensus 3 D~tV~iWdl~~~~----------h~~~Vtavafs~~pd~~~~~~llaaG~----dg~I~Iwd~~s--g~~--l~~~~~~~ 64 (1371)
++-|.+|++.+.. ..+..+-|+|+ |+ ++.|.++. .+.|..|.+.. |++ +.... ..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~--~~----~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVN--PD----QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LP 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEEC--CC----CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cC
Confidence 4559999988543 55678999999 98 67777754 38888888864 654 22222 23
Q ss_pred CccEEEEEeeccccccCCCCcceeeEEEE--ECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCc--------
Q 000654 65 GIRLHGISCNFINCTEGSVSTRVTFEVAL--FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW-------- 134 (1371)
Q Consensus 65 ~~~I~~i~~s~~~~~~~pdg~~~~~~la~--~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~-------- 134 (1371)
+.+-.-++++ ++| +++.+ +..+.|.++.+..... +........|.+.
T Consensus 88 g~~p~yvsvd-------~~g----~~vf~AnY~~g~v~v~p~~~dG~------------l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 88 GSPPCYVSVD-------EDG----RFVFVANYHSGSVSVYPLQADGS------------LQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred CCCCeEEEEC-------CCC----CEEEEEEccCceEEEEEcccCCc------------cccceeeeecCCCCCCccccC
Confidence 3344777888 887 34444 3479999999975321 1111111123333
Q ss_pred --EEEEEEEeecCCCcEEEEEEC-CCcEEEEECCCCeEEEE--EecCCcceEEEEEeeccCCCCcEEEE-EeCCCeEEEE
Q 000654 135 --VFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVW 208 (1371)
Q Consensus 135 --I~~v~fsp~~~dg~~Latgs~-Dg~I~vWd~~~~~~~~~--l~~~~~~~v~s~~~~~~s~d~~~Las-gs~dg~I~vW 208 (1371)
+....|.| ++++|++..- --.|.+|++..|+.... .....++-...+.| .|++.+.+. .--+++|.+|
T Consensus 145 ~h~H~a~~tP---~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~F---Hpn~k~aY~v~EL~stV~v~ 218 (346)
T COG2706 145 PHVHSANFTP---DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVF---HPNGKYAYLVNELNSTVDVL 218 (346)
T ss_pred CccceeeeCC---CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEE---cCCCcEEEEEeccCCEEEEE
Confidence 88899999 9998877642 33599999998765322 12233333445666 677887765 4568999999
Q ss_pred EcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEe------cccCCEEEEEEcCCCCEEEEEeC-CCcEE
Q 000654 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV------GHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (1371)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~------gH~~~I~~v~~spdg~~LaS~s~-Dg~Vr 281 (1371)
.+.... .+...++.+. .-..+.-.|..++||++|..+-. ...|.
T Consensus 219 ~y~~~~-----------------------------g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 219 EYNPAV-----------------------------GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred EEcCCC-----------------------------ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 998210 0112222211 12345677899999999977643 33788
Q ss_pred EEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCC-CeEEEEeC
Q 000654 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-CTCRVWGS 335 (1371)
Q Consensus 282 iWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~D-g~I~VWd~ 335 (1371)
++.+...... +..+. ....+........++ +++|+.+.++ .+|.||..
T Consensus 270 ~f~V~~~~g~----L~~~~--~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 270 VFSVDPDGGK----LELVG--ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred EEEEcCCCCE----EEEEE--EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 8877654321 22222 222333334555554 6888888765 46889988
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.40 E-value=0.0009 Score=76.78 Aligned_cols=224 Identities=12% Similarity=0.081 Sum_probs=139.5
Q ss_pred CCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEE-EEeecCCCcEEEEEECCCcEE
Q 000654 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC-FLKVCNGNRSLAIGCSDNSIR 160 (1371)
Q Consensus 82 pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~-fsp~~~dg~~Latgs~Dg~I~ 160 (1371)
.|| ..++....|.|.+||.+++....-... +.............+..-+. |++ .+|++++..+. |...
T Consensus 276 sDG----krIvFq~~GdIylydP~td~lekldI~----lpl~rk~k~~k~~~pskyledfa~--~~Gd~ia~VSR-GkaF 344 (668)
T COG4946 276 SDG----KRIVFQNAGDIYLYDPETDSLEKLDIG----LPLDRKKKQPKFVNPSKYLEDFAV--VNGDYIALVSR-GKAF 344 (668)
T ss_pred CCC----cEEEEecCCcEEEeCCCcCcceeeecC----CccccccccccccCHHHhhhhhcc--CCCcEEEEEec-CcEE
Confidence 777 677777789999999987541111000 00000000111111111122 343 26788887764 5666
Q ss_pred EEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCC-eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee
Q 000654 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1371)
Q Consensus 161 vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg-~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1371)
|.+...+-.+.. ....+ +-|. .+ ..+..-++.|+.|| .+-|+|..
T Consensus 345 i~~~~~~~~iqv-~~~~~-VrY~-r~---~~~~e~~vigt~dgD~l~iyd~~---------------------------- 390 (668)
T COG4946 345 IMRPWDGYSIQV-GKKGG-VRYR-RI---QVDPEGDVIGTNDGDKLGIYDKD---------------------------- 390 (668)
T ss_pred EECCCCCeeEEc-CCCCc-eEEE-EE---ccCCcceEEeccCCceEEEEecC----------------------------
Confidence 766655543322 11111 2222 22 44566888999999 89999987
Q ss_pred cccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC-
Q 000654 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD- 318 (1371)
Q Consensus 240 ~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~- 318 (1371)
+..+.++.+.-+.|.++..+|+|++++.+-+...+.+.|+.++.. + ..-....+-|+...|++
T Consensus 391 ------~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv------~----~idkS~~~lItdf~~~~n 454 (668)
T COG4946 391 ------GGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV------R----LIDKSEYGLITDFDWHPN 454 (668)
T ss_pred ------CceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe------e----EecccccceeEEEEEcCC
Confidence 334556667788999999999999999999988999999998865 2 13344556789999984
Q ss_pred -CEEEEEeCCC----eEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEE
Q 000654 319 -SFIITAGEDC----TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1371)
Q Consensus 319 -~~L~Sgs~Dg----~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg 367 (1371)
.++|-+--+| .|+++|+.+..+.......+ .=.+-+|.||+++|.--+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-cccCcccCCCCcEEEEEe
Confidence 6777765554 59999996544443333332 135678999999876544
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=7.7e-05 Score=86.86 Aligned_cols=283 Identities=15% Similarity=0.200 Sum_probs=169.7
Q ss_pred cEEEEEEEecCCCCCCCCEEEEEe------------CCcEEEEECCCCeEEEEEEeecCc-cEE-EEEeeccccccCCCC
Q 000654 19 EISALCFVHLPSHLSSLPFLLAGS------------GSQVLLYDLEAGTLIRPFQVFHGI-RLH-GISCNFINCTEGSVS 84 (1371)
Q Consensus 19 ~Vtavafs~~pd~~~~~~llaaG~------------dg~I~Iwd~~sg~~l~~~~~~~~~-~I~-~i~~s~~~~~~~pdg 84 (1371)
.|.-+.|| |. .+||++-+ +..|+|||+.+|.+.+.|....+. .+. -..|| .|+
T Consensus 251 ~Vq~idfS--P~----EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-------~Dd 317 (698)
T KOG2314|consen 251 GVQFIDFS--PN----EKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-------HDD 317 (698)
T ss_pred CceeeecC--Cc----cceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-------cCC
Confidence 48899999 98 78998843 157999999999999988875432 223 23577 675
Q ss_pred cceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC-----CCcE
Q 000654 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSI 159 (1371)
Q Consensus 85 ~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~-----Dg~I 159 (1371)
.++|--...+|.||+... +.++..-.-.-+.|....|+| .+.+||-=.. -..+
T Consensus 318 ----Ky~Arm~~~sisIyEtps---------------f~lld~Kslki~gIr~FswsP---~~~llAYwtpe~~~~parv 375 (698)
T KOG2314|consen 318 ----KYFARMTGNSISIYETPS---------------FMLLDKKSLKISGIRDFSWSP---TSNLLAYWTPETNNIPARV 375 (698)
T ss_pred ----ceeEEeccceEEEEecCc---------------eeeecccccCCccccCcccCC---CcceEEEEcccccCCcceE
Confidence 678877789999998653 222211112235688889999 7666653221 1234
Q ss_pred EEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEE----------eCCCeEEEEEcccCCccccCCCCCCCCCCC
Q 000654 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG----------TIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1371)
Q Consensus 160 ~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasg----------s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~ 229 (1371)
.+..+.+++.++...-.. +....+++. .+|.+|+.- +....+-|+.++
T Consensus 376 tL~evPs~~~iRt~nlfn---VsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrir------------------ 433 (698)
T KOG2314|consen 376 TLMEVPSKREIRTKNLFN---VSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR------------------ 433 (698)
T ss_pred EEEecCccceeeecccee---eeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEee------------------
Confidence 455555555444322111 111222222 235555431 222233333333
Q ss_pred CCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC---CCcEEEEEccCCcccCCCCceeeeceEeec
Q 000654 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1371)
Q Consensus 230 ~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~---Dg~VriWdl~~~~~~~~~~~~~~~~~~~~g 306 (1371)
...-++..+ .-...|...+|-|.|..+++-+. ..++++|.+.+.... ...+. .+.
T Consensus 434 --------------eKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~----~~lVk--~~d- 491 (698)
T KOG2314|consen 434 --------------EKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK----PSLVK--ELD- 491 (698)
T ss_pred --------------ccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc----hhhhh--hhc-
Confidence 122222222 24577889999999988776543 357888888742210 11111 111
Q ss_pred CCccEEEEEEc--CCEEEEE---eCCCeEEEEeCCC-cEE-EEEeeccCcCEEEEEEcCCCCEEEEEEC------CCcEE
Q 000654 307 HNARVWDCCLT--DSFIITA---GEDCTCRVWGSDG-KQL-KMIKEHIGRGIWRCLYDSLSSLLVTAGF------DSAIK 373 (1371)
Q Consensus 307 h~~~I~~l~~s--~~~L~Sg---s~Dg~I~VWd~~g-~~l-~~l~~h~~~~V~sl~~spdg~~L~Tgg~------Dg~I~ 373 (1371)
....+.+.|+ |++++.+ |..|.+..+|.+- ... .....|.. .+.+.|.|.|+|++|++. |...+
T Consensus 492 -k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~--at~veWDPtGRYvvT~ss~wrhk~d~GYr 568 (698)
T KOG2314|consen 492 -KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA--ATEVEWDPTGRYVVTSSSSWRHKVDNGYR 568 (698)
T ss_pred -ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccc--cccceECCCCCEEEEeeehhhhccccceE
Confidence 2345677888 5666655 5678899999853 222 22334543 788999999999999874 77889
Q ss_pred EEEcCCCCcc
Q 000654 374 VHQFQAFLPG 383 (1371)
Q Consensus 374 lwdl~~~~~~ 383 (1371)
+|++.|++++
T Consensus 569 i~tfqGrll~ 578 (698)
T KOG2314|consen 569 IFTFQGRLLK 578 (698)
T ss_pred EEEeecHHHH
Confidence 9999886554
No 271
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.36 E-value=4.1e-06 Score=88.98 Aligned_cols=75 Identities=19% Similarity=0.378 Sum_probs=61.5
Q ss_pred CEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEE
Q 000654 258 SIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVW 333 (1371)
Q Consensus 258 ~I~~v~~spdg-~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VW 333 (1371)
.|.+++-+|.. ..+++|++||.+-+||.+....+ . ..+..|+.+||.+.|+ |..|+++++||.+.-|
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----~-----S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----V-----SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccch----H-----HHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 38888888854 56788999999999999886431 1 2678899999999998 6899999999999999
Q ss_pred eCCCcEEE
Q 000654 334 GSDGKQLK 341 (1371)
Q Consensus 334 d~~g~~l~ 341 (1371)
|.+++.+.
T Consensus 252 das~~~l~ 259 (319)
T KOG4714|consen 252 DASTTFLS 259 (319)
T ss_pred cCCCceEE
Confidence 98765443
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.35 E-value=8.1e-07 Score=105.40 Aligned_cols=227 Identities=15% Similarity=0.188 Sum_probs=149.9
Q ss_pred EEEEeCCCCc----------ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe-EEEEEEeecCccEEEEEe
Q 000654 6 LSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-LIRPFQVFHGIRLHGISC 73 (1371)
Q Consensus 6 V~iWdl~~~~----------h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~-~l~~~~~~~~~~I~~i~~ 73 (1371)
-.||++.... |...|+.+.|+ |. ....+++++ |..+..||+.+-. .+..+..-+. +-..++|
T Consensus 93 aiiwnlA~ss~~aIef~lhghsraitd~n~~--~q---~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-~asqVkw 166 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFN--PQ---HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-AASQVKW 166 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccceeccccC--CC---CCcceeeccccccceeeeccCCCcceeeeecccc-cCceeee
Confidence 3567766543 77889999998 75 234666676 8999999998753 4444444333 5677888
Q ss_pred eccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEE
Q 000654 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1371)
Q Consensus 74 s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latg 153 (1371)
+. .++ ..+|.+-++-|++||++.+. .++..+++|...|+.++|+.. -...+.+.
T Consensus 167 ny------k~p----~vlasshg~~i~vwd~r~gs--------------~pl~s~K~~vs~vn~~~fnr~--~~s~~~s~ 220 (1081)
T KOG0309|consen 167 NY------KDP----NVLASSHGNDIFVWDLRKGS--------------TPLCSLKGHVSSVNSIDFNRF--KYSEIMSS 220 (1081)
T ss_pred cc------cCc----chhhhccCCceEEEeccCCC--------------cceEEecccceeeehHHHhhh--hhhhhccc
Confidence 82 343 57888889999999998744 567888899999999999762 34568899
Q ss_pred ECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCC
Q 000654 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1371)
Q Consensus 154 s~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1371)
+.|++|+.||..+.....+........++-.++.++. +|.++.---.++.+.+.+.+.
T Consensus 221 ~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg-~g~~~mp~~G~n~v~~~~c~n--------------------- 278 (1081)
T KOG0309|consen 221 SNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG-EGYCIMPMVGGNMVPQLRCEN--------------------- 278 (1081)
T ss_pred CCCCceeeecccccccccceeccccCcceeccccccC-ceeEeccccCCeeeeeccccc---------------------
Confidence 9999999999976544333333333344444443332 222222111123444554441
Q ss_pred cceeeecccccceeeEEEEecccCCEEEEEEcCCC----------CEEEEEeCCCcEEEEEccCC
Q 000654 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----------SKLVSVSDDRSARIWEVRAE 288 (1371)
Q Consensus 234 ~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg----------~~LaS~s~Dg~VriWdl~~~ 288 (1371)
....|..-....+++.+.||.+.|....|-..+ -.|+|-|.|.++|+|-+.+.
T Consensus 279 --~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 279 --SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred --hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 011122222567899999999999877664322 26999999999999998764
No 273
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=7.2e-05 Score=92.04 Aligned_cols=201 Identities=12% Similarity=0.054 Sum_probs=115.0
Q ss_pred ccCCCCcEEEEEEEeecCCCcEEEEEECC-C--cEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEE-EeCCC
Q 000654 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSD-N--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYN 203 (1371)
Q Consensus 128 l~gh~~~I~~v~fsp~~~dg~~Latgs~D-g--~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Las-gs~dg 203 (1371)
+..+...+....|+| ||+.|+..+.+ + .|.+||+.+++........ . ......+ +||+..|+. ...++
T Consensus 213 l~~~~~~~~~p~wSP---DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g-~~~~~~w---SPDG~~La~~~~~~g 284 (448)
T PRK04792 213 LLRSPEPLMSPAWSP---DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-G-INGAPRF---SPDGKKLALVLSKDG 284 (448)
T ss_pred eecCCCcccCceECC---CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-C-CcCCeeE---CCCCCEEEEEEeCCC
Confidence 334567889999999 99988766543 2 5888899877643221111 1 1223344 788887764 56666
Q ss_pred e--EEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC-CCc-
Q 000654 204 E--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRS- 279 (1371)
Q Consensus 204 ~--I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-Dg~- 279 (1371)
. |.++|+. ++ ....+..+........|+||+++|+..+. ++.
T Consensus 285 ~~~Iy~~dl~---------------------------------tg-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~ 330 (448)
T PRK04792 285 QPEIYVVDIA---------------------------------TK-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKP 330 (448)
T ss_pred CeEEEEEECC---------------------------------CC-CeEECccCCCCccceEECCCCCEEEEEECCCCCc
Confidence 5 5666665 11 12334445556677899999998876654 344
Q ss_pred -EEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeC-CCe--EEEEeCCCcEEEEEeeccCcCEEE
Q 000654 280 -ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCT--CRVWGSDGKQLKMIKEHIGRGIWR 353 (1371)
Q Consensus 280 -VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~-Dg~--I~VWd~~g~~l~~l~~h~~~~V~s 353 (1371)
|.++|+.+++. + .+..........+|+ +++|+..+. ++. |.++|+.+.....+..... ...
T Consensus 331 ~Iy~~dl~~g~~------~-----~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~--d~~ 397 (448)
T PRK04792 331 QIYRVNLASGKV------S-----RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL--DES 397 (448)
T ss_pred eEEEEECCCCCE------E-----EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC--CCC
Confidence 55556655433 1 121122223345676 466655543 444 4556764333344432221 234
Q ss_pred EEEcCCCCEEEEEEC-CCc--EEEEEcCCCCcc
Q 000654 354 CLYDSLSSLLVTAGF-DSA--IKVHQFQAFLPG 383 (1371)
Q Consensus 354 l~~spdg~~L~Tgg~-Dg~--I~lwdl~~~~~~ 383 (1371)
..|+|||+.|+.... ++. +.+++.++...+
T Consensus 398 ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~ 430 (448)
T PRK04792 398 PSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKA 430 (448)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence 579999998766554 443 556666654433
No 274
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=0.00012 Score=89.41 Aligned_cols=242 Identities=11% Similarity=0.025 Sum_probs=134.3
Q ss_pred cEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECC--CeEEEEEeccCCCCCCCCCCccceee
Q 000654 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE--KRVKLFELNFELSPNSQYQPETCVNL 122 (1371)
Q Consensus 45 ~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd--~sV~vwdl~~~~~~~~~~~~~~~v~~ 122 (1371)
.|.+.|...+.. ..+.... ..+..-+|+ |||++....+++..+ ..|.+.++..+. .
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~-~~~~sP~wS-------PDG~~~~~~y~S~~~g~~~I~~~~l~~g~-------------~ 223 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEH-SLSITPTWM-------HIGSGFPYLYVSYKLGVPKIFLGSLENPA-------------G 223 (428)
T ss_pred eEEEEcCCCCCc-eEcccCC-CCcccceEc-------cCCCceEEEEEEccCCCceEEEEECCCCC-------------c
Confidence 577777765543 2333222 245667899 998411112233333 356666665432 2
Q ss_pred eeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC-----CCcEEEEECCCC--eEEEEEecCCcceEEEEEeeccCCCCcE
Q 000654 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALR 195 (1371)
Q Consensus 123 ~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~-----Dg~I~vWd~~~~--~~~~~l~~~~~~~v~s~~~~~~s~d~~~ 195 (1371)
+.+..+.+ .....+|+| ||+.|+..+. |-.+.+|++..+ .....+............+ +|||..
T Consensus 224 ~~lt~~~g---~~~~p~wSP---DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w---SPDG~~ 294 (428)
T PRK01029 224 KKILALQG---NQLMPTFSP---RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF---SPDGTR 294 (428)
T ss_pred eEeecCCC---CccceEECC---CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE---CCCCCE
Confidence 33443443 345679999 9988876553 323455777653 1222232222122233444 889987
Q ss_pred EEEEe-CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEE
Q 000654 196 IASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1371)
Q Consensus 196 Lasgs-~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~ 274 (1371)
|+..+ .+|...+|.+.. ...+.....+..+...+....|+|||++|+..
T Consensus 295 Laf~s~~~g~~~ly~~~~------------------------------~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 295 LVFVSNKDGRPRIYIMQI------------------------------DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred EEEEECCCCCceEEEEEC------------------------------cccccceEEeccCCCCccceeECCCCCEEEEE
Confidence 77654 466666665430 00111233444455667788999999998876
Q ss_pred eCC---CcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEE-EEeC--CCeEEEEeCCCcEEEEEeec
Q 000654 275 SDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII-TAGE--DCTCRVWGSDGKQLKMIKEH 346 (1371)
Q Consensus 275 s~D---g~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~-Sgs~--Dg~I~VWd~~g~~l~~l~~h 346 (1371)
+.+ ..|.+||+.+++. + .+......+....|+ ++.|+ ++.. ...|.+|++++.....+...
T Consensus 345 ~~~~g~~~I~v~dl~~g~~------~-----~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 345 SVIKGVRQICVYDLATGRD------Y-----QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred EcCCCCcEEEEEECCCCCe------E-----EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 653 4689999987654 1 233223345667887 45555 4433 35688888854444444434
Q ss_pred cCcCEEEEEEcCC
Q 000654 347 IGRGIWRCLYDSL 359 (1371)
Q Consensus 347 ~~~~V~sl~~spd 359 (1371)
.+ .+...+|+|-
T Consensus 414 ~g-~~~~p~Ws~~ 425 (428)
T PRK01029 414 SG-EKRFPSWGAF 425 (428)
T ss_pred CC-cccCceecCC
Confidence 44 3666777764
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.29 E-value=0.0002 Score=83.06 Aligned_cols=270 Identities=13% Similarity=0.129 Sum_probs=165.6
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECC
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd 96 (1371)
.-|+..+++| |. |++|++..-..|.+|.-..+..+..+. | ..|.-+.|+ |.+ .+|.++..
T Consensus 32 ~~p~~~~~~S--P~----G~~l~~~~~~~V~~~~g~~~~~l~~~~-~--~~V~~~~fS-------P~~----kYL~tw~~ 91 (561)
T COG5354 32 NWPVAYVSES--PL----GTYLFSEHAAGVECWGGPSKAKLVRFR-H--PDVKYLDFS-------PNE----KYLVTWSR 91 (561)
T ss_pred Ccchhheeec--Cc----chheehhhccceEEccccchhheeeee-c--CCceecccC-------ccc----ceeeeecc
Confidence 4578999999 98 899999888899999988776655555 2 258899999 887 67777763
Q ss_pred ----------------CeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCc--EE-EEEEEeecCCCcEEEEEECCC
Q 000654 97 ----------------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW--VF-DVCFLKVCNGNRSLAIGCSDN 157 (1371)
Q Consensus 97 ----------------~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~--I~-~v~fsp~~~dg~~Latgs~Dg 157 (1371)
+.+.+||+..+ ..+..+.+-..+ .+ -+.|+- +..++|=- ...
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg---------------~iv~sf~~~~q~~~~Wp~~k~s~---~D~y~ARv-v~~ 152 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASG---------------MIVFSFNGISQPYLGWPVLKFSI---DDKYVARV-VGS 152 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCc---------------eeEeeccccCCcccccceeeeee---cchhhhhh-ccC
Confidence 24788888753 344444444333 44 567776 65655433 344
Q ss_pred cEEEEECCCCeEE----EEEecCCcceEEEEEeeccCCC--CcEEEE-----EeCCCeEEEEEcccCCccccCCCCCCCC
Q 000654 158 SIRVWDISNSSII----LEVHSPERCLLYSMKLWGDNLE--ALRIAS-----GTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1371)
Q Consensus 158 ~I~vWd~~~~~~~----~~l~~~~~~~v~s~~~~~~s~d--~~~Las-----gs~dg~I~vWd~~~~~~~~~~~~~~~~s 226 (1371)
.+.|+++ ++... ..+. +.+ +....+ +|. +..|+. ++..+.+++|.+.
T Consensus 153 sl~i~e~-t~n~~~~p~~~lr-~~g--i~dFsi---sP~~n~~~la~~tPEk~~kpa~~~i~sIp--------------- 210 (561)
T COG5354 153 SLYIHEI-TDNIEEHPFKNLR-PVG--ILDFSI---SPEGNHDELAYWTPEKLNKPAMVRILSIP--------------- 210 (561)
T ss_pred eEEEEec-CCccccCchhhcc-ccc--eeeEEe---cCCCCCceEEEEccccCCCCcEEEEEEcc---------------
Confidence 6899997 33221 1111 111 112222 222 112222 3445566666654
Q ss_pred CCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEe-----------CCCcEEEEEccCCcccCCCC
Q 000654 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-----------DDRSARIWEVRAEYWKDSDS 295 (1371)
Q Consensus 227 ~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s-----------~Dg~VriWdl~~~~~~~~~~ 295 (1371)
....+....-....=..+.|.+.|++|+.-- ....+.|+++.....+
T Consensus 211 ------------------~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~---- 268 (561)
T COG5354 211 ------------------KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP---- 268 (561)
T ss_pred ------------------CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc----
Confidence 2222222111222334577888887765321 1245777777754331
Q ss_pred ceeeeceEeecCCccEEEEEEcC--CE--EEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECC--
Q 000654 296 IEEVGSSVLYGHNARVWDCCLTD--SF--IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD-- 369 (1371)
Q Consensus 296 ~~~~~~~~~~gh~~~I~~l~~s~--~~--L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~D-- 369 (1371)
......++|.+.+|.+ +. +++|-.+.++.++|+.++....+..... ..+.|+|.+++++.+|.|
T Consensus 269 -------V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~r---NT~~fsp~~r~il~agF~nl 338 (561)
T COG5354 269 -------VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKR---NTIFFSPHERYILFAGFDNL 338 (561)
T ss_pred -------eeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCccc---ccccccCcccEEEEecCCcc
Confidence 3336678999999963 33 4455688999999998886666554433 468899999999998876
Q ss_pred -CcEEEEEcCC
Q 000654 370 -SAIKVHQFQA 379 (1371)
Q Consensus 370 -g~I~lwdl~~ 379 (1371)
|.+-+|+..+
T Consensus 339 ~gni~i~~~~~ 349 (561)
T COG5354 339 QGNIEIFDPAG 349 (561)
T ss_pred ccceEEeccCC
Confidence 5788888754
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.29 E-value=2.6e-06 Score=109.96 Aligned_cols=190 Identities=12% Similarity=0.164 Sum_probs=132.0
Q ss_pred CCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEc
Q 000654 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1371)
Q Consensus 131 h~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~ 210 (1371)
+-..|.++.=+| ...+-+||+.||.|++|....++.+..+.......+..+.| +-.|+.+..+..||.+.+|..
T Consensus 2207 ~v~~v~r~~sHp---~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f---~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP---SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF---NHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ccCceeeecCCC---CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh---cccCCceeeeccCCceeeccc
Confidence 345667776677 66778899999999999999888877776544444444444 667899999999999999987
Q ss_pred ccCCccccCC---CCCCC----C---CCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcE
Q 000654 211 DWEHVAPLLN---SPEGN----H---AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1371)
Q Consensus 211 ~~~~~~~~~~---~~~~~----s---~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~V 280 (1371)
.......-.. ....+ + ..+...+++++.+|+.-.....-..-..|.+.++++++.|..+.|+||+.+|.|
T Consensus 2281 ~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2281 SPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred CCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence 6211100000 00111 1 122334788999998543333322337899999999999999999999999999
Q ss_pred EEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeCC-CcEEEEEe
Q 000654 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD-GKQLKMIK 344 (1371)
Q Consensus 281 riWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~~-g~~l~~l~ 344 (1371)
.+||++..+. .. ++ .. +. ...++++|+..|.++||+++ -..+.++.
T Consensus 2361 ~l~D~rqrql-----~h-----~~-----~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2361 CLFDIRQRQL-----RH-----TF-----QA--LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEeehHHHHH-----HH-----Hh-----hh--hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999988655 11 11 11 11 35799999999999999994 34455443
No 277
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=0.00013 Score=89.84 Aligned_cols=198 Identities=13% Similarity=0.032 Sum_probs=116.7
Q ss_pred ccCCCCcEEEEEEEeecCCCcEEEEEECC---CcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEE-EEeCCC
Q 000654 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYN 203 (1371)
Q Consensus 128 l~gh~~~I~~v~fsp~~~dg~~Latgs~D---g~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~La-sgs~dg 203 (1371)
+..+...+....|+| +|+.|+..+.+ ..|.+||+.+++........ .......| +|++..|+ +...+|
T Consensus 194 l~~~~~~~~~p~wSp---DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~--g~~~~~~~---SpDG~~la~~~~~~g 265 (430)
T PRK00178 194 LLQSREPILSPRWSP---DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE--GLNGAPAW---SPDGSKLAFVLSKDG 265 (430)
T ss_pred EecCCCceeeeeECC---CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--CCcCCeEE---CCCCCEEEEEEccCC
Confidence 445667899999999 99988776543 36889999887653322111 11223344 78888776 444454
Q ss_pred --eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC-CC--
Q 000654 204 --EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR-- 278 (1371)
Q Consensus 204 --~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-Dg-- 278 (1371)
.|.+||+.+ +. ...+..+........|+||++.|+..+. ++
T Consensus 266 ~~~Iy~~d~~~---------------------------------~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~ 311 (430)
T PRK00178 266 NPEIYVMDLAS---------------------------------RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKP 311 (430)
T ss_pred CceEEEEECCC---------------------------------CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCc
Confidence 577778762 11 2234445555667889999998876664 33
Q ss_pred cEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeC-CC--eEEEEeCCCcEEEEEeeccCcCEEE
Q 000654 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DC--TCRVWGSDGKQLKMIKEHIGRGIWR 353 (1371)
Q Consensus 279 ~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~-Dg--~I~VWd~~g~~l~~l~~h~~~~V~s 353 (1371)
.|.++++.+++. +.+ ...+ .......|+ +++|+..+. ++ .|.+||+.+.....+.. .. ....
T Consensus 312 ~iy~~d~~~g~~------~~l---t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~-~~~~ 378 (430)
T PRK00178 312 QIYKVNVNGGRA------ERV---TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-TS-LDES 378 (430)
T ss_pred eEEEEECCCCCE------EEe---ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-CC-CCCC
Confidence 466667665543 111 1112 223345676 566665543 33 47888984333344432 22 1235
Q ss_pred EEEcCCCCEEEEEECC-C--cEEEEEcCCC
Q 000654 354 CLYDSLSSLLVTAGFD-S--AIKVHQFQAF 380 (1371)
Q Consensus 354 l~~spdg~~L~Tgg~D-g--~I~lwdl~~~ 380 (1371)
..|+|||++|+..+.+ + .+.++++.+.
T Consensus 379 p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 379 PSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 6899999988766543 3 3555566543
No 278
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.23 E-value=0.00026 Score=87.07 Aligned_cols=230 Identities=11% Similarity=0.026 Sum_probs=130.2
Q ss_pred cEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC----CCeEEEEEeccCCCCCCCCCCccce
Q 000654 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPETCV 120 (1371)
Q Consensus 45 ~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g----d~sV~vwdl~~~~~~~~~~~~~~~v 120 (1371)
.|.++|...+.. ..+..+.. .+....|+ ||| ..|+..+ ...|.+|++..+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~-~~~~p~wS-------pDG----~~la~~s~~~~~~~l~~~~l~~g~------------ 234 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSRE-PILSPRWS-------PDG----KRIAYVSFEQKRPRIFVQNLDTGR------------ 234 (430)
T ss_pred EEEEECCCCCCc-eEEecCCC-ceeeeeEC-------CCC----CEEEEEEcCCCCCEEEEEECCCCC------------
Confidence 478888765543 33433333 78899999 998 3444332 2468888887533
Q ss_pred eeeeeeeccCCCCcEEEEEEEeecCCCcEEEE-EECCC--cEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEE
Q 000654 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1371)
Q Consensus 121 ~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Lat-gs~Dg--~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~La 197 (1371)
.+.+... .+.+...+|+| +|+.|+. ...++ .|.+||+.++... .+.... .......| ++|+..|+
T Consensus 235 -~~~l~~~---~g~~~~~~~Sp---DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~-~~~~~~~~---spDg~~i~ 302 (430)
T PRK00178 235 -REQITNF---EGLNGAPAWSP---DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP-AIDTEPFW---GKDGRTLY 302 (430)
T ss_pred -EEEccCC---CCCcCCeEECC---CCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC-CCcCCeEE---CCCCCEEE
Confidence 2222222 23455789999 9988764 44444 5888899887643 233222 22233344 78888766
Q ss_pred EEe-CCC--eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEE
Q 000654 198 SGT-IYN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1371)
Q Consensus 198 sgs-~dg--~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~ 274 (1371)
..+ .++ .|.++++.+ ++ ...+...........|+||+++|+..
T Consensus 303 f~s~~~g~~~iy~~d~~~---------------------------------g~-~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 303 FTSDRGGKPQIYKVNVNG---------------------------------GR-AERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCCceEEEEECCC---------------------------------CC-EEEeecCCCCccceEECCCCCEEEEE
Confidence 544 334 455556541 11 11111111223457899999998877
Q ss_pred eCC-C--cEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeC-CC--eEEEEeCCCcEEEEEeec
Q 000654 275 SDD-R--SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DC--TCRVWGSDGKQLKMIKEH 346 (1371)
Q Consensus 275 s~D-g--~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~-Dg--~I~VWd~~g~~l~~l~~h 346 (1371)
+.+ + .|.+||+.++.. + .+. +........|+ ++.++..+. ++ .+.+++++|.....+..+
T Consensus 349 ~~~~~~~~l~~~dl~tg~~------~-----~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~ 416 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSV------R-----ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTA 416 (430)
T ss_pred EccCCceEEEEEECCCCCE------E-----Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCC
Confidence 653 3 477888877543 1 111 11111234566 466655543 33 466667777766666655
Q ss_pred cCcCEEEEEEcC
Q 000654 347 IGRGIWRCLYDS 358 (1371)
Q Consensus 347 ~~~~V~sl~~sp 358 (1371)
.+ .+...+|+|
T Consensus 417 ~g-~~~~p~ws~ 427 (430)
T PRK00178 417 QG-EVREPSWSP 427 (430)
T ss_pred CC-CcCCCccCC
Confidence 55 366777766
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.20 E-value=0.0054 Score=71.81 Aligned_cols=266 Identities=8% Similarity=0.013 Sum_probs=149.6
Q ss_pred CcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeC----------CCeEEEEEcccCCccccCCCCCCCC
Q 000654 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI----------YNEIIVWKVDWEHVAPLLNSPEGNH 226 (1371)
Q Consensus 157 g~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~----------dg~I~vWd~~~~~~~~~~~~~~~~s 226 (1371)
++|.+.|..+++.+..+........ + + ++|+..|+.+.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~---spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~--------------- 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-V---ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ--------------- 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--e-E---CCCCCEEEEEeccccccccCCCCCEEEEEECc---------------
Confidence 8899999999999988876544332 1 2 788888877655 7899999998
Q ss_pred CCCCCCCcceeeecccccceeeEEEEecc-------cCCEEEEEEcCCCCEEEEEe-C-CCcEEEEEccCCcccCCCCce
Q 000654 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGH-------EGSIFRIEWSSCGSKLVSVS-D-DRSARIWEVRAEYWKDSDSIE 297 (1371)
Q Consensus 227 ~~~~~~~~~~i~i~~~~~~~~~~~~l~gH-------~~~I~~v~~spdg~~LaS~s-~-Dg~VriWdl~~~~~~~~~~~~ 297 (1371)
+.+.+..+.-- ......++++|||++|.... . +..|-+.|+.+++. +.
T Consensus 86 ------------------t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-----v~ 142 (352)
T TIGR02658 86 ------------------THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-----VR 142 (352)
T ss_pred ------------------cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-----EE
Confidence 44444444321 12334688999999888665 3 78999999999876 33
Q ss_pred eeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC--CCcEEE-EEee-cc------CcCEEEEEEcC-CCCEEEEE
Q 000654 298 EVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLK-MIKE-HI------GRGIWRCLYDS-LSSLLVTA 366 (1371)
Q Consensus 298 ~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~--~g~~l~-~l~~-h~------~~~V~sl~~sp-dg~~L~Tg 366 (1371)
++. - .....-...++.....-+.||......+ +|+... .... +. .++ .|.+ +++++...
T Consensus 143 ei~-----v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs 212 (352)
T TIGR02658 143 MMD-----V-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPT 212 (352)
T ss_pred EEe-----C-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEe
Confidence 232 1 1111112222333334455666655544 344211 1110 11 112 3455 77777666
Q ss_pred ECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCc-EEEEEcC------
Q 000654 367 GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNH------ 439 (1371)
Q Consensus 367 g~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~-llv~t~~------ 439 (1371)
.. |+|.+.|+.+....... .+...... ..-..| ..+...-++++++++ +++....
T Consensus 213 ~e-G~V~~id~~~~~~~~~~-------------~~~~~~~~--~~~~~w--rP~g~q~ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLP-------------AIEAFTEA--EKADGW--RPGGWQQVAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred cC-CeEEEEecCCCcceecc-------------eeeecccc--cccccc--CCCcceeEEEcCCCCEEEEEecCCccccc
Confidence 55 99999998543221111 11100000 000001 123344589999875 4553321
Q ss_pred ----CcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCC-EEEEEe-CCCcEEEEEEcCCccc
Q 000654 440 ----GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD-WVALGD-GKGNMTIVRVVGDVHT 507 (1371)
Q Consensus 440 ----G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~-lla~gs-~dG~I~iwdi~~~~~~ 507 (1371)
+.+. +.+..+ ++.+.....+.....+.+ .++++ +|++.+ .++.|.++|..+++..
T Consensus 275 k~~~~~V~---ViD~~t--~kvi~~i~vG~~~~~iav--------S~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 275 KTASRFLF---VVDAKT--GKRLRKIELGHEIDSINV--------SQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred cCCCCEEE---EEECCC--CeEEEEEeCCCceeeEEE--------CCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 2333 333333 233444444556666666 35566 777776 5778999998876544
No 280
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.19 E-value=0.0011 Score=80.65 Aligned_cols=268 Identities=9% Similarity=0.002 Sum_probs=144.9
Q ss_pred CEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEE----EeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCC
Q 000654 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGI----SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (1371)
Q Consensus 36 ~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i----~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~ 111 (1371)
++++.+.++.|.-+|.++|+.+.+........+..- .++.. ....++ .+++...++.+.-+|.+++.
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~v~~~----~v~v~~~~g~l~ald~~tG~--- 141 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG--VTVAGG----KVYIGSEKGQVYALNAEDGE--- 141 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccc--cEEECC----EEEEEcCCCEEEEEECCCCC---
Confidence 444444479999999999999877654221111110 00100 000122 56666668899999987643
Q ss_pred CCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceE----EEEEee
Q 000654 112 SQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----YSMKLW 187 (1371)
Q Consensus 112 ~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v----~s~~~~ 187 (1371)
..-...+. +.+.+--.. .+..++.+..++.+.-+|..+|+.+-+......... .+..+
T Consensus 142 ----------~~W~~~~~---~~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v- 203 (394)
T PRK11138 142 ----------VAWQTKVA---GEALSRPVV----SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT- 203 (394)
T ss_pred ----------CcccccCC---CceecCCEE----ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE-
Confidence 11111111 122211111 234566677889999999999998877654321100 01111
Q ss_pred ccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccc----ceeeEEEEecccCCEEEEE
Q 000654 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH----TAVNLFRLVGHEGSIFRIE 263 (1371)
Q Consensus 188 ~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~----~~~~~~~l~gH~~~I~~v~ 263 (1371)
.+..++.++.+|.+...|..+++.. |.... .......+ ..+.
T Consensus 204 ----~~~~v~~~~~~g~v~a~d~~~G~~~-----------------------W~~~~~~~~~~~~~~~~-------~~~~ 249 (394)
T PRK11138 204 ----AFGGAIVGGDNGRVSAVLMEQGQLI-----------------------WQQRISQPTGATEIDRL-------VDVD 249 (394)
T ss_pred ----ECCEEEEEcCCCEEEEEEccCChhh-----------------------heeccccCCCccchhcc-------cccC
Confidence 1235666778899988888743321 11000 00000000 0111
Q ss_pred EcC--CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC-CCcEE
Q 000654 264 WSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQL 340 (1371)
Q Consensus 264 ~sp--dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l 340 (1371)
.+| .+..++.++.++.+...|..+++.. ..........+...+..|+.++.++.+..+|. +|+.+
T Consensus 250 ~sP~v~~~~vy~~~~~g~l~ald~~tG~~~------------W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 250 TTPVVVGGVVYALAYNGNLVALDLRSGQIV------------WKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred CCcEEECCEEEEEEcCCeEEEEECCCCCEE------------EeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEE
Confidence 122 2456667778899999998887541 11111111233445788888899999999999 78776
Q ss_pred EEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 341 KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 341 ~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.....-......+..+ .+.+|+.++.||.+.+.|..
T Consensus 318 W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 318 WSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRE 353 (394)
T ss_pred EcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECC
Confidence 5433211111222233 24577888999999999873
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.18 E-value=0.00086 Score=90.28 Aligned_cols=220 Identities=8% Similarity=-0.021 Sum_probs=126.3
Q ss_pred cEEEEEEEeecCCCcEEEEEE-CCCcEEEEECCCCeEEEEEecC-C---------------cceEEEEEeeccCC-CCcE
Q 000654 134 WVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSP-E---------------RCLLYSMKLWGDNL-EALR 195 (1371)
Q Consensus 134 ~I~~v~fsp~~~dg~~Latgs-~Dg~I~vWd~~~~~~~~~l~~~-~---------------~~~v~s~~~~~~s~-d~~~ 195 (1371)
....+++.+ +++.|+++. ..+.|+++|..++... .+.+. . -...+.+++ ++ ++.+
T Consensus 625 ~P~GIavd~---~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~---dp~~g~L 697 (1057)
T PLN02919 625 RPQGLAYNA---KKNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF---EPVNEKV 697 (1057)
T ss_pred CCcEEEEeC---CCCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEE---ecCCCeE
Confidence 457899988 777666654 4567999998776532 22110 0 011234444 45 5666
Q ss_pred EEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCC-EEEEE
Q 000654 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSV 274 (1371)
Q Consensus 196 Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~-~LaS~ 274 (1371)
+++...++.|++||...+...... +.+. .... .+.. .....-.....|+++|+++ ++++-
T Consensus 698 yVad~~~~~I~v~d~~~g~v~~~~---------G~G~----~~~~----~g~~--~~~~~~~~P~GIavspdG~~LYVAD 758 (1057)
T PLN02919 698 YIAMAGQHQIWEYNISDGVTRVFS---------GDGY----ERNL----NGSS--GTSTSFAQPSGISLSPDLKELYIAD 758 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEe---------cCCc----cccC----CCCc--cccccccCccEEEEeCCCCEEEEEE
Confidence 777778899999998732211000 0000 0000 0000 0001123457799999988 45566
Q ss_pred eCCCcEEEEEccCCccc---CCCCceeeeceEeec--------CCccEEEEEEc--CCEEEEEeCCCeEEEEeCCCcEEE
Q 000654 275 SDDRSARIWEVRAEYWK---DSDSIEEVGSSVLYG--------HNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLK 341 (1371)
Q Consensus 275 s~Dg~VriWdl~~~~~~---~~~~~~~~~~~~~~g--------h~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~g~~l~ 341 (1371)
+.++.|++||+.++... ............+.. .-.....++++ +..+++-..++.|++||..+..+.
T Consensus 759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 77899999998865320 000000000000000 01123567776 467778888999999999554444
Q ss_pred EEeeccC-------------cCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 342 MIKEHIG-------------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 342 ~l~~h~~-------------~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
++.+... .....++++++|+++++-+.++.|++||+..
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 4433210 1357899999999989888999999999954
No 282
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.00031 Score=86.48 Aligned_cols=230 Identities=11% Similarity=0.064 Sum_probs=127.0
Q ss_pred cEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE--CC--CeEEEEEeccCCCCCCCCCCccce
Q 000654 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF--GE--KRVKLFELNFELSPNSQYQPETCV 120 (1371)
Q Consensus 45 ~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~--gd--~sV~vwdl~~~~~~~~~~~~~~~v 120 (1371)
.|.++|...... ..+.... ..+....|+ |||+ .|+.. .+ ..|.+||+..+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~-~~~~~p~wS-------PDG~----~La~~s~~~g~~~L~~~dl~tg~------------ 253 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSP-EPLMSPAWS-------PDGR----KLAYVSFENRKAEIFVQDIYTQV------------ 253 (448)
T ss_pred EEEEEeCCCCCc-eEeecCC-CcccCceEC-------CCCC----EEEEEEecCCCcEEEEEECCCCC------------
Confidence 677778654433 3333323 368889999 9983 44433 23 357777876532
Q ss_pred eeeeeeeccCCCCcEEEEEEEeecCCCcEEEE-EECCCc--EEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEE
Q 000654 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1371)
Q Consensus 121 ~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Lat-gs~Dg~--I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~La 197 (1371)
.+.+....+ .....+|+| ||+.|+. ...++. |.+||+.+++.. .+.... .......| ++|+..|+
T Consensus 254 -~~~lt~~~g---~~~~~~wSP---DG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~-~~~~~p~w---SpDG~~I~ 321 (448)
T PRK04792 254 -REKVTSFPG---INGAPRFSP---DGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR-AIDTEPSW---HPDGKSLI 321 (448)
T ss_pred -eEEecCCCC---CcCCeeECC---CCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC-CCccceEE---CCCCCEEE
Confidence 223333333 334678999 9987764 455664 777788777543 332221 22333444 78888776
Q ss_pred EEe-CCCeEEE--EEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEE
Q 000654 198 SGT-IYNEIIV--WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1371)
Q Consensus 198 sgs-~dg~I~v--Wd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~ 274 (1371)
..+ .++...+ +|+. .++ ...+..........+|+|||++|+..
T Consensus 322 f~s~~~g~~~Iy~~dl~---------------------------------~g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 322 FTSERGGKPQIYRVNLA---------------------------------SGK-VSRLTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred EEECCCCCceEEEEECC---------------------------------CCC-EEEEecCCCCCcCeeECCCCCEEEEE
Confidence 544 3444444 4544 111 11222122233457899999988776
Q ss_pred eC-CCc--EEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEE-eCCCe--EEEEeCCCcEEEEEeec
Q 000654 275 SD-DRS--ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA-GEDCT--CRVWGSDGKQLKMIKEH 346 (1371)
Q Consensus 275 s~-Dg~--VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sg-s~Dg~--I~VWd~~g~~l~~l~~h 346 (1371)
+. ++. |.++|+.++.. + .+.... ......|+ ++.|+.. ..++. +.+++.+|+....+..+
T Consensus 368 ~~~~g~~~I~~~dl~~g~~------~-----~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~ 435 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAM------Q-----VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAG 435 (448)
T ss_pred EecCCceEEEEEECCCCCe------E-----EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCC
Confidence 55 343 44456655433 1 111111 11223566 4555544 34443 66777788877777766
Q ss_pred cCcCEEEEEEcC
Q 000654 347 IGRGIWRCLYDS 358 (1371)
Q Consensus 347 ~~~~V~sl~~sp 358 (1371)
.+ .+...+|+|
T Consensus 436 ~g-~~~~p~Wsp 446 (448)
T PRK04792 436 QG-EVKSPAWSP 446 (448)
T ss_pred CC-CcCCCccCC
Confidence 55 367777876
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.09 E-value=5.8e-05 Score=81.91 Aligned_cols=286 Identities=15% Similarity=0.223 Sum_probs=160.4
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe-----EEEEEEeecC-----------ccEEEEEeeccccc
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFHG-----------IRLHGISCNFINCT 79 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~-----~l~~~~~~~~-----------~~I~~i~~s~~~~~ 79 (1371)
..-|++|.|. .. |.||++|. +|.|.+|.-+... .+.+|+.|+. .+|..|.|.
T Consensus 26 ad~ItaVefd--~t----g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~----- 94 (460)
T COG5170 26 ADKITAVEFD--ET----GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF----- 94 (460)
T ss_pred cceeeEEEec--cc----cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee-----
Confidence 4558999999 55 78999999 7999999864322 1223443331 467788876
Q ss_pred cCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeee--c-----cCCCCcEEEEE------EEeecCC
Q 000654 80 EGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS--L-----PRLSHWVFDVC------FLKVCNG 146 (1371)
Q Consensus 80 ~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~--l-----~gh~~~I~~v~------fsp~~~d 146 (1371)
.+++ ...++++..|++|++|.+.... ++.+.. + ....+++++.. .+. .
T Consensus 95 --~~t~-r~hFLlstNdktiKlWKiyekn-------------lk~va~nnls~~~~~~~~g~~~s~~~l~lprls~---h 155 (460)
T COG5170 95 --DDTG-RNHFLLSTNDKTIKLWKIYEKN-------------LKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSE---H 155 (460)
T ss_pred --cCCC-cceEEEecCCceeeeeeeeccc-------------chhhhccccccccccccCCCcCCHHHhhcccccc---c
Confidence 3321 2367777789999999997542 111100 0 00011111110 111 1
Q ss_pred CcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCC
Q 000654 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1371)
Q Consensus 147 g~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s 226 (1371)
.. ++.+ .. .+++ ...+.+.+.++.+ ..|...++++. |=.|.+|++.
T Consensus 156 d~-iiaa-~p--~rvy-----------aNaH~yhiNSiS~---NsD~et~lSaD-dLrINLWnl~--------------- 201 (460)
T COG5170 156 DE-IIAA-KP--CRVY-----------ANAHPYHINSISF---NSDKETLLSAD-DLRINLWNLE--------------- 201 (460)
T ss_pred ce-EEEe-cc--ceec-----------cccceeEeeeeee---cCchheeeecc-ceeeeecccc---------------
Confidence 11 2111 11 1222 1123344556655 45566666654 6678888877
Q ss_pred CCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcccCC-CC-----ceee
Q 000654 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDS-DS-----IEEV 299 (1371)
Q Consensus 227 ~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg-~~LaS~s~Dg~VriWdl~~~~~~~~-~~-----~~~~ 299 (1371)
..++.+.|.+.. -+.+..-...|++..|+|.. ..+.-.+..|.|++-|++....-.. .. +..+
T Consensus 202 -----i~D~sFnIVDiK-----P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v 271 (460)
T COG5170 202 -----IIDGSFNIVDIK-----PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGV 271 (460)
T ss_pred -----ccCCceEEEecc-----CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcc
Confidence 112222222211 01111223568888999854 4555667789999999984321000 00 0101
Q ss_pred eceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC--CCcEEEEEeeccC-----------cCE---EEEEEcCCCC
Q 000654 300 GSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIG-----------RGI---WRCLYDSLSS 361 (1371)
Q Consensus 300 ~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~--~g~~l~~l~~h~~-----------~~V---~sl~~spdg~ 361 (1371)
....+.+-...|.++.|+ ++++++-+ --+++|||. ...+++++.-|.. +.| ..+.|+-|.+
T Consensus 272 ~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~ 350 (460)
T COG5170 272 DVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDK 350 (460)
T ss_pred cchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcc
Confidence 001222334578889998 45665544 458999999 6788888866531 123 3577888999
Q ss_pred EEEEEECCCcEEEEEc
Q 000654 362 LLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 362 ~L~Tgg~Dg~I~lwdl 377 (1371)
.+++|+.....-++-.
T Consensus 351 ~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 351 HVLSGSYSNNFGIYPT 366 (460)
T ss_pred cccccccccceeeecc
Confidence 9999999888888764
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=1.1e-05 Score=92.74 Aligned_cols=231 Identities=16% Similarity=0.153 Sum_probs=146.9
Q ss_pred eEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe
Q 000654 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1371)
Q Consensus 89 ~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~ 168 (1371)
.++.++.|++|++|.++.+.. ..-.-.+..++..|..+|.++.|.. +-++++++ |+-|.+||.--++
T Consensus 749 SFiSASkDKTVKLWSik~EgD--------~~~tsaCQfTY~aHkk~i~~igfL~---~lr~i~Sc--D~giHlWDPFigr 815 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGD--------EIGTSACQFTYQAHKKPIHDIGFLA---DLRSIASC--DGGIHLWDPFIGR 815 (1034)
T ss_pred ceeeccCCceEEEEEeccccC--------ccccceeeeEhhhccCcccceeeee---ccceeeec--cCcceeecccccc
Confidence 566667799999999986431 1111235667889999999999998 77777765 8899999998888
Q ss_pred EEEEEecC----CcceEEEEEeeccCCCCcEEEEE-eCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccc
Q 000654 169 IILEVHSP----ERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1371)
Q Consensus 169 ~~~~l~~~----~~~~v~s~~~~~~s~d~~~Lasg-s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~ 243 (1371)
.+.++... ....+.++. +.+..++.+| +...+|+++|.+..+- .
T Consensus 816 ~Laq~~dapk~~a~~~ikcl~----nv~~~iliAgcsaeSTVKl~DaRsce~-------------------------~-- 864 (1034)
T KOG4190|consen 816 LLAQMEDAPKEGAGGNIKCLE----NVDRHILIAGCSAESTVKLFDARSCEW-------------------------T-- 864 (1034)
T ss_pred hhHhhhcCcccCCCceeEecc----cCcchheeeeccchhhheeeecccccc-------------------------e--
Confidence 77654321 122233321 3344555554 7889999999882110 0
Q ss_pred cceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEE-EcCCEEE
Q 000654 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-LTDSFII 322 (1371)
Q Consensus 244 ~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~-~s~~~L~ 322 (1371)
-.-.+..-.+..+.+.+++..+.|++++.+-..|.|.+.|.++++...+ +..-......++ -+++.|+
T Consensus 865 -~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs----------wrpmecdllqlaapsdq~L~ 933 (1034)
T KOG4190|consen 865 -CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS----------WRPMECDLLQLAAPSDQALA 933 (1034)
T ss_pred -eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc----------CCcccchhhhhcCchhHHHH
Confidence 0011122245567789999999999999999999999999999875211 111111122222 2356788
Q ss_pred EEeCCCeEEE-EeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 323 TAGEDCTCRV-WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 323 Sgs~Dg~I~V-Wd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
....|.++.| |-. +|....+.+.... +..- ...-|.-|++......+.+|.-
T Consensus 934 ~saldHslaVnWhaldgimh~q~kpppe-pahf--lqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 934 QSALDHSLAVNWHALDGIMHLQDKPPPE-PAHF--LQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred hhcccceeEeeehhcCCeeeeccCCCCc-chhh--hhccCceeEEeccCcEEEEEec
Confidence 8888889988 987 6665554443222 1100 1122456777766667777754
No 285
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.00083 Score=82.13 Aligned_cols=214 Identities=12% Similarity=0.037 Sum_probs=119.3
Q ss_pred cEEEEeCCCCc------ccCcEEEEEEEecCCCCCCCC---EEEEEe-C--CcEEEEECCCCeEEEEEEeecCccEEEEE
Q 000654 5 DLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLP---FLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1371)
Q Consensus 5 tV~iWdl~~~~------h~~~Vtavafs~~pd~~~~~~---llaaG~-d--g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~ 72 (1371)
.|.+.|...+. ...++..-+|+ || ++ +++... + +.|.+.++.+|+.. .+..+.+ .....+
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wS--PD----G~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g-~~~~p~ 237 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWM--HI----GSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQG-NQLMPT 237 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEc--cC----CCceEEEEEEccCCCceEEEEECCCCCce-EeecCCC-CccceE
Confidence 45666655443 23345667899 99 44 222333 2 67888999887643 2333344 456688
Q ss_pred eeccccccCCCCcceeeEEEEEC--CC----eEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCC
Q 000654 73 CNFINCTEGSVSTRVTFEVALFG--EK----RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1371)
Q Consensus 73 ~s~~~~~~~pdg~~~~~~la~~g--d~----sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~d 146 (1371)
|| |||+ .|+... ++ .+.+|++.... . .+......++.+.....+|+| |
T Consensus 238 wS-------PDG~----~Laf~s~~~g~~di~~~~~~~~~g~--~----------g~~~~lt~~~~~~~~~p~wSP---D 291 (428)
T PRK01029 238 FS-------PRKK----LLAFISDRYGNPDLFIQSFSLETGA--I----------GKPRRLLNEAFGTQGNPSFSP---D 291 (428)
T ss_pred EC-------CCCC----EEEEEECCCCCcceeEEEeecccCC--C----------CcceEeecCCCCCcCCeEECC---C
Confidence 99 9993 444433 22 33446655321 0 111122222223446779999 9
Q ss_pred CcEEEEEE-CCCcEEEE--ECCC-CeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCC---CeEEEEEcccCCccccC
Q 000654 147 NRSLAIGC-SDNSIRVW--DISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLL 219 (1371)
Q Consensus 147 g~~Latgs-~Dg~I~vW--d~~~-~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~d---g~I~vWd~~~~~~~~~~ 219 (1371)
|+.|+..+ .++...+| ++.. +.....+..... ......+ +||+..|+....+ ..|.+||+.+
T Consensus 292 G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-~~~~p~w---SPDG~~Laf~~~~~g~~~I~v~dl~~------- 360 (428)
T PRK01029 292 GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-NSSCPAW---SPDGKKIAFCSVIKGVRQICVYDLAT------- 360 (428)
T ss_pred CCEEEEEECCCCCceEEEEECcccccceEEeccCCC-CccceeE---CCCCCEEEEEEcCCCCcEEEEEECCC-------
Confidence 99887665 45655555 4432 222333332221 2233444 8899988765443 4688888872
Q ss_pred CCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC---CCcEEEEEccCCcc
Q 000654 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRAEYW 290 (1371)
Q Consensus 220 ~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~---Dg~VriWdl~~~~~ 290 (1371)
++. ..+......+....|+|||+.|+..+. ...|.+||+..++.
T Consensus 361 --------------------------g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 361 --------------------------GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred --------------------------CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 221 223323345677899999998775433 34688888876543
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.03 E-value=8.7e-05 Score=79.20 Aligned_cols=249 Identities=13% Similarity=0.174 Sum_probs=134.5
Q ss_pred EEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeec-CccEEEEEeeccccccCCCCcc----eeeEEEE
Q 000654 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTR----VTFEVAL 93 (1371)
Q Consensus 20 Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~-~~~I~~i~~s~~~~~~~pdg~~----~~~~la~ 93 (1371)
|+.+.|+ -+ ..|+.+. ++.+..+....+.++...+.-. -++-++++-+.. |+... ++.-+++
T Consensus 39 ~~~~~~v--~~-----~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~se-----p~p~~~~s~~~t~V~~ 106 (319)
T KOG4714|consen 39 LSKVSLS--AE-----YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSE-----IDPNDACTMTDNRVCI 106 (319)
T ss_pred EEEeech--hh-----heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCC-----CCCcccccccCCceEe
Confidence 6777777 43 4566665 6888888887776655443211 235566664422 21110 1133444
Q ss_pred E-CCCeEEEEEeccCCCCCCCCCCccceeeeeeeecc-CCCCcEEEEEEEeecCCCcEEEEEE-----CCCcEEEEECCC
Q 000654 94 F-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGC-----SDNSIRVWDISN 166 (1371)
Q Consensus 94 ~-gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~-gh~~~I~~v~fsp~~~dg~~Latgs-----~Dg~I~vWd~~~ 166 (1371)
. .|+.+.+++.+... ...+... .|.+. -+.++.. .++.|.++. .-+..+.|++..
T Consensus 107 ~~~dg~~~v~s~~~~~--------------~~~~~i~~~~~~~-as~~~~~---~~~~i~s~~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 107 GYADGSLAVFSTDKDL--------------ALMSRIPSIHSGS-ASRKICR---HGNSILSGGCGNWNAQDNFYANTLDP 168 (319)
T ss_pred cCCCceEEEEechHHH--------------hhhhhcccccccc-cccceee---cccEEecCCcceEeeccceeeecccc
Confidence 4 48999999876411 1111111 11111 1111111 222232221 122355666643
Q ss_pred CeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccce
Q 000654 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1371)
Q Consensus 167 ~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~ 246 (1371)
.+.+..-...... +.+++-+ .....+++.|+.||.+-+||.+. ..
T Consensus 169 ~~t~~~~~~~~~~-v~~l~~h--p~qq~~v~cgt~dg~~~l~d~rn--------------------------------~~ 213 (319)
T KOG4714|consen 169 IKTLIPSKKALDA-VTALCSH--PAQQHLVCCGTDDGIVGLWDARN--------------------------------VA 213 (319)
T ss_pred ccccccccccccc-chhhhCC--cccccEEEEecCCCeEEEEEccc--------------------------------cc
Confidence 3222111111111 3333322 22456788899999999999982 12
Q ss_pred eeEEEEecccCCEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCccc------------CCCCce---eeeceEeecCCcc
Q 000654 247 VNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWK------------DSDSIE---EVGSSVLYGHNAR 310 (1371)
Q Consensus 247 ~~~~~l~gH~~~I~~v~~sp-dg~~LaS~s~Dg~VriWdl~~~~~~------------~~~~~~---~~~~~~~~gh~~~ 310 (1371)
.+...+..|+.+|..|.|+| ++..|.++++||.+.-||..+.-.. ..+..+ .+.+ .+......
T Consensus 214 ~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~-ll~~~~~S 292 (319)
T KOG4714|consen 214 MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITS-LLPSRSLS 292 (319)
T ss_pred chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeec-ccccccee
Confidence 23455778999999999999 5678999999999999998742211 001110 0110 22223334
Q ss_pred EEEEEEcCCEEEEEeCCCeEEEEe
Q 000654 311 VWDCCLTDSFIITAGEDCTCRVWG 334 (1371)
Q Consensus 311 I~~l~~s~~~L~Sgs~Dg~I~VWd 334 (1371)
|.++...+..|++|+.-+.|.+.+
T Consensus 293 insfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 293 INSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eeeeeccCceEEeccccceEEEec
Confidence 566666688899998888888765
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.01 E-value=0.0036 Score=84.49 Aligned_cols=265 Identities=12% Similarity=0.099 Sum_probs=144.5
Q ss_pred EEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEe-ec------------CccEEEEEeeccccccCCCCcc
Q 000654 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQV-FH------------GIRLHGISCNFINCTEGSVSTR 86 (1371)
Q Consensus 21 tavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~-~~------------~~~I~~i~~s~~~~~~~pdg~~ 86 (1371)
..++++ ++ .++++++-. ++.|++||.. |..+..+.. .. -...++|++. ++++
T Consensus 571 ~gvavd--~~---~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-------~~gn- 636 (1057)
T PLN02919 571 GKLAID--LL---NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-------AKKN- 636 (1057)
T ss_pred ceEEEE--CC---CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-------CCCC-
Confidence 457777 53 245666655 5899999975 444444332 00 0235788888 7662
Q ss_pred eeeEEEEE-CCCeEEEEEeccCCCCCCCCCCccceeeeeeee-------ccC-------CCCcEEEEEEEeecCCC-cEE
Q 000654 87 VTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQS-------LPR-------LSHWVFDVCFLKVCNGN-RSL 150 (1371)
Q Consensus 87 ~~~~la~~-gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~-------l~g-------h~~~I~~v~fsp~~~dg-~~L 150 (1371)
.++++- +.+.|+++|+.... ...+.. ..+ .-..-++++|+| ++ .++
T Consensus 637 --~LYVaDt~n~~Ir~id~~~~~-------------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp---~~g~Ly 698 (1057)
T PLN02919 637 --LLYVADTENHALREIDFVNET-------------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEP---VNEKVY 698 (1057)
T ss_pred --EEEEEeCCCceEEEEecCCCE-------------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEec---CCCeEE
Confidence 344443 35789999876422 110000 000 012346899998 54 455
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecC--------------CcceEEEEEeeccCCCCc-EEEEEeCCCeEEEEEcccCCc
Q 000654 151 AIGCSDNSIRVWDISNSSIILEVHSP--------------ERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHV 215 (1371)
Q Consensus 151 atgs~Dg~I~vWd~~~~~~~~~l~~~--------------~~~~v~s~~~~~~s~d~~-~Lasgs~dg~I~vWd~~~~~~ 215 (1371)
++...++.|++||..++.... +.+. .......+.+ ++++. ++++-..++.|++||+.++..
T Consensus 699 Vad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIav---spdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISL---SPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEE---eCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 666778899999998775432 1110 0011223444 66776 455566679999999874321
Q ss_pred cccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCC
Q 000654 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1371)
Q Consensus 216 ~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~ 295 (1371)
.....+... ......+..+...... ...-....+++++++|..+++-+.++.|++||..++...
T Consensus 775 ~~~~gg~~~-------~~~~l~~fG~~dG~g~-----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~---- 838 (1057)
T PLN02919 775 RLLAGGDPT-------FSDNLFKFGDHDGVGS-----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT---- 838 (1057)
T ss_pred EEEEecccc-------cCcccccccCCCCchh-----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE----
Confidence 100000000 0000000000000000 001123458899999999999999999999999876431
Q ss_pred ceeeec--------eEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCc
Q 000654 296 IEEVGS--------SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGK 338 (1371)
Q Consensus 296 ~~~~~~--------~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~ 338 (1371)
...+. ....+.-.....++++ ++.+++-+.++.|++||+ +++
T Consensus 839 -tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 839 -TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred -EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 10000 0011122356778886 577788888999999999 444
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.98 E-value=2.3e-05 Score=60.62 Aligned_cols=38 Identities=37% Similarity=0.594 Sum_probs=36.1
Q ss_pred eeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000654 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1371)
Q Consensus 247 ~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWd 284 (1371)
+++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=5.2e-05 Score=87.37 Aligned_cols=298 Identities=13% Similarity=0.166 Sum_probs=170.2
Q ss_pred eeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCC-CCceeeeceEeecCCccEEEEEEcCCEEEEEe
Q 000654 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS-DSIEEVGSSVLYGHNARVWDCCLTDSFIITAG 325 (1371)
Q Consensus 247 ~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~-~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs 325 (1371)
-.+..+.||...|..++--.+.+.++++|.|.+|++|.++....... ..-+ .+...|+.+|.++.|-...-..++
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQ----fTY~aHkk~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQ----FTYQAHKKPIHDIGFLADLRSIAS 801 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceee----eEhhhccCcccceeeeeccceeee
Confidence 34677889999999998888888999999999999999986432100 0011 478899999999999744334445
Q ss_pred CCCeEEEEeC-CCcEEEEEee-ccCcCEEEEEEcC--CCCEEEEE-ECCCcEEEEEcCCCCcccccCCCccccccCCccE
Q 000654 326 EDCTCRVWGS-DGKQLKMIKE-HIGRGIWRCLYDS--LSSLLVTA-GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1371)
Q Consensus 326 ~Dg~I~VWd~-~g~~l~~l~~-h~~~~V~sl~~sp--dg~~L~Tg-g~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i 400 (1371)
.||.|.+||. -|+++..+.. .+...+..+..-+ +...++.| +...+|+++|.+.-. ...+.
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce--------------~~~E~ 867 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE--------------WTCEL 867 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc--------------ceeeE
Confidence 6899999998 7777654321 1111244444444 33444444 679999999984210 00011
Q ss_pred EEeeecCCccceeeccCCCccEEEEEEecCCcEEEE-EcCCcEEEEEeecCCC-ceeEEeEeecCCccEEEEeecCCCCC
Q 000654 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDS-VNWNKILQVSEGMPIICMDLLSNEPK 478 (1371)
Q Consensus 401 ~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~-t~~G~i~~~~l~~~~~-~~w~~i~~~~~~~~I~~ld~~~~~~~ 478 (1371)
.++ + ..+....+++++..+.|+.+++ -++|.+...+-.+... ..|+.+- .++ ..
T Consensus 868 -kVc--n-------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdl----lq 923 (1034)
T KOG4190|consen 868 -KVC--N-------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDL----LQ 923 (1034)
T ss_pred -Eec--c-------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chh----hh
Confidence 111 0 0122356899999998876654 4778776443322221 1142111 111 11
Q ss_pred CCCCCCCEEEEEeCCCcEEE-EEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCC
Q 000654 479 YPCGIDDWVALGDGKGNMTI-VRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFS 557 (1371)
Q Consensus 479 ~s~~~~~lla~gs~dG~I~i-wdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~ 557 (1371)
+..+.+..++....|..+.+ |..-++.... +..-..++.+ .+ ..-|.-|++......+.+|.-.....
T Consensus 924 laapsdq~L~~saldHslaVnWhaldgimh~----q~kpppepah-fl------qsvgpSLV~a~~Gn~lgVYad~a~~h 992 (1034)
T KOG4190|consen 924 LAAPSDQALAQSALDHSLAVNWHALDGIMHL----QDKPPPEPAH-FL------QSVGPSLVTAQNGNILGVYADSAELH 992 (1034)
T ss_pred hcCchhHHHHhhcccceeEeeehhcCCeeee----ccCCCCcchh-hh------hccCceeEEeccCcEEEEEecchhhh
Confidence 22355666777777777777 7654432111 1111111111 11 12244567666666777775322110
Q ss_pred ccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEE
Q 000654 558 SVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVL 606 (1371)
Q Consensus 558 ~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~I 606 (1371)
.. ....++. +. .+.+..++++.-|-+.-+..|...|.|.+
T Consensus 993 --a~--stitKiR-~d----~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 993 --AE--STITKIR-PD----EFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred --hh--hhhcccc-cc----ccCCccceeeeccccchhhccCCCCceee
Confidence 00 0000111 11 24566788888888887888999998875
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.98 E-value=6.6e-05 Score=81.50 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=142.2
Q ss_pred CCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe-----EEEEEecCCc-----------ceEEEEEeeccCCCCc
Q 000654 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----IILEVHSPER-----------CLLYSMKLWGDNLEAL 194 (1371)
Q Consensus 131 h~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~-----~~~~l~~~~~-----------~~v~s~~~~~~s~d~~ 194 (1371)
..+.|++|.|.. .|.+|++|...|.|.++.-.... ....+++++. .-+..+.++.......
T Consensus 25 ead~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 25 EADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ccceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 346899999988 89999999888999999765432 1223333321 1123444443333333
Q ss_pred EEEEEeCCCeEEEEEcccCCccccCCCCC---CCCCCCCCC-Ccceeeecccccce-----eeEEEE-ecccCCEEEEEE
Q 000654 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPE---GNHAHGSSS-DFKCFKLQDQQHTA-----VNLFRL-VGHEGSIFRIEW 264 (1371)
Q Consensus 195 ~Lasgs~dg~I~vWd~~~~~~~~~~~~~~---~~s~~~~~~-~~~~i~i~~~~~~~-----~~~~~l-~gH~~~I~~v~~ 264 (1371)
+| ..+.|.+|++|.+....+.......+ ..++..... ....+++-...... .+.+.. ..|.-.|.+|.|
T Consensus 102 FL-lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 102 FL-LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred EE-EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 44 45569999999988543322211000 011111100 11111111111111 111222 468888999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecC-----CccEEEEEEcC---CEEEEEeCCCeEEEEeCC
Q 000654 265 SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-----NARVWDCCLTD---SFIITAGEDCTCRVWGSD 336 (1371)
Q Consensus 265 spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh-----~~~I~~l~~s~---~~L~Sgs~Dg~I~VWd~~ 336 (1371)
..|...++++ +|-.|.+|++.-... +...+ ...+| ..-|++..|++ +.+.-.+..|.|++-|+.
T Consensus 181 NsD~et~lSa-DdLrINLWnl~i~D~----sFnIV---DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 181 NSDKETLLSA-DDLRINLWNLEIIDG----SFNIV---DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred cCchheeeec-cceeeeeccccccCC----ceEEE---eccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 9999988886 455799999876432 11111 22333 34578888884 677777889999999983
Q ss_pred Cc-----EEEE------------EeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC--CCCcccccCC
Q 000654 337 GK-----QLKM------------IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ--AFLPGSLESH 388 (1371)
Q Consensus 337 g~-----~l~~------------l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~--~~~~~~l~~~ 388 (1371)
.. ..+. +.+-.. .|..+.|+++|+++++-.. -++++||.+ ..++.++..|
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivs-SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVS-SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhh-hhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 11 1111 111122 4778899999999887654 489999984 3455555444
No 291
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00072 Score=82.11 Aligned_cols=107 Identities=13% Similarity=0.185 Sum_probs=75.2
Q ss_pred EEEEEEecCCCCCCCCEEEEEe-----CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEE-E
Q 000654 21 SALCFVHLPSHLSSLPFLLAGS-----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-F 94 (1371)
Q Consensus 21 tavafs~~pd~~~~~~llaaG~-----dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~-~ 94 (1371)
+-..|+ |. .+++|+++ +|.|.||- ++|++-....- ...+.+++|+ |.- .+++. +
T Consensus 19 ti~SWH--Ps----ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWH-------pe~----~vLa~gw 78 (1416)
T KOG3617|consen 19 TISSWH--PS----EPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWH-------PEE----FVLAQGW 78 (1416)
T ss_pred cccccC--CC----CceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccC-------hHH----HHHhhcc
Confidence 344666 66 67777765 48899996 56764332221 1245678999 652 33333 4
Q ss_pred CCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECC
Q 000654 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1371)
Q Consensus 95 gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~ 165 (1371)
+-|.+.+|...+.. .-.....|..+|..+.|++ +|..|+|+..-|.|.+|...
T Consensus 79 e~g~~~v~~~~~~e---------------~htv~~th~a~i~~l~wS~---~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTE---------------THTVVETHPAPIQGLDWSH---DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccceeEEEecCCce---------------eeeeccCCCCCceeEEecC---CCCeEEEcCCCceeEEEEee
Confidence 46899999987522 2233457999999999999 99999999999999999875
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.94 E-value=0.0012 Score=70.90 Aligned_cols=265 Identities=10% Similarity=-0.022 Sum_probs=152.9
Q ss_pred cEEEEeCCCCc--ccCcEEEEEEEecCCCC-CCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeecccccc
Q 000654 5 DLSEWRLDVGQ--YLGEISALCFVHLPSHL-SSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE 80 (1371)
Q Consensus 5 tV~iWdl~~~~--h~~~Vtavafs~~pd~~-~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~ 80 (1371)
.|-+|++-+.. -..--+.+.|- |..+ +...+||+|. .|...+|.+.+.+.+..+-. ..+.+|.+....|-.
T Consensus 53 sv~i~~~y~N~~~iv~~y~g~~F~--p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd---~snn~v~~~~r~cd~ 127 (344)
T KOG4532|consen 53 SVPINSHYSNPKGIVEFYTGMTFT--PGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD---VSNNDVTLVKRYCDL 127 (344)
T ss_pred eeEeccccCCchhhEEeeeccccc--chHhhccccEEEeccccceeeeecccCcccceeeec---ccccchhhhhhhccc
Confidence 45677766554 11112677777 7422 2245777775 69999999987654322221 123333333211110
Q ss_pred CCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEE
Q 000654 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (1371)
Q Consensus 81 ~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~ 160 (1371)
. -.++++.-|.++++.+++.+.. ...++.. . -.+.++++++ ++.++++.+....|-
T Consensus 128 -~-----~~~~i~sndht~k~~~~~~~s~------------~~~~h~~-~--~~~ns~~~sn---d~~~~~~Vgds~~Vf 183 (344)
T KOG4532|consen 128 -K-----FPLNIASNDHTGKTMVVSGDSN------------KFAVHNQ-N--LTQNSLHYSN---DPSWGSSVGDSRRVF 183 (344)
T ss_pred -c-----cceeeccCCcceeEEEEecCcc------------cceeecc-c--cceeeeEEcC---CCceEEEecCCCcce
Confidence 1 1466667799999999875330 1111111 0 1278899999 999999999999999
Q ss_pred EEECCCCe--EEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceee
Q 000654 161 VWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1371)
Q Consensus 161 vWd~~~~~--~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~ 238 (1371)
.|.+.... .......+....-++..+ +.....+|++..||.+.|||++.-...
T Consensus 184 ~y~id~~sey~~~~~~a~t~D~gF~~S~---s~~~~~FAv~~Qdg~~~I~DVR~~~tp---------------------- 238 (344)
T KOG4532|consen 184 RYAIDDESEYIENIYEAPTSDHGFYNSF---SENDLQFAVVFQDGTCAIYDVRNMATP---------------------- 238 (344)
T ss_pred EEEeCCccceeeeeEecccCCCceeeee---ccCcceEEEEecCCcEEEEEecccccc----------------------
Confidence 99886532 223233333333344444 667889999999999999999821100
Q ss_pred ecccccceeeEEEEecccCCEEEEEEcCCCC--EEEEEeCCCcEEEEEccCCcccCCCCceeeec--eEeecCCcc-EEE
Q 000654 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS--KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNAR-VWD 313 (1371)
Q Consensus 239 i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~--~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~--~~~~gh~~~-I~~ 313 (1371)
.......-..|.+.+..+.|++.|. +|.-.-.-+.+.+-|+++... .+.+.+ -....|... |..
T Consensus 239 ------m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~-----~q~I~i~~d~~~~~~tq~ifg 307 (344)
T KOG4532|consen 239 ------MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN-----HQVIVIPDDVERKHNTQHIFG 307 (344)
T ss_pred ------hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce-----eeEEecCcccccccccccccc
Confidence 0011112235899999999998663 444444456789999988754 222210 123344433 777
Q ss_pred EEEc--CCEEEEEeCCCeEEEEeC
Q 000654 314 CCLT--DSFIITAGEDCTCRVWGS 335 (1371)
Q Consensus 314 l~~s--~~~L~Sgs~Dg~I~VWd~ 335 (1371)
..|+ +..+.++.++ .+.=|++
T Consensus 308 t~f~~~n~s~~v~~e~-~~ae~ni 330 (344)
T KOG4532|consen 308 TNFNNENESNDVKNEL-QGAEYNI 330 (344)
T ss_pred ccccCCCcccccccch-hhheeec
Confidence 7776 3344444433 2334444
No 293
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.92 E-value=0.022 Score=61.33 Aligned_cols=98 Identities=11% Similarity=-0.021 Sum_probs=68.7
Q ss_pred CCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEE-cCCEEEEEeCCCeEEEEeC-CCcEEEEEee
Q 000654 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL-TDSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1371)
Q Consensus 268 g~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~-s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~ 345 (1371)
..+++.||..+.+.--|..++... .+ .--..+|-+-+. -+++++.|+..|.+.+-+. +|.+...+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~----We-------~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI----WE-------AILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE----ee-------hhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 346677788877777777776541 11 111234444333 3788999999999999999 8877777655
Q ss_pred ccCcCEE-EEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 346 HIGRGIW-RCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 346 h~~~~V~-sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
-.. |- .....+++..+..|+.|++....|..
T Consensus 92 ~~~--vk~~a~~d~~~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 92 LET--VKVRAQCDFDGGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred hhh--hccceEEcCCCceEEEecCCCcEEEeccc
Confidence 433 32 23457889999999999999999885
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.89 E-value=0.015 Score=65.08 Aligned_cols=218 Identities=11% Similarity=0.060 Sum_probs=126.6
Q ss_pred CCcEEEEECCCCeEEEEEEeec-CccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCcccee
Q 000654 43 GSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (1371)
Q Consensus 43 dg~I~Iwd~~sg~~l~~~~~~~-~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~ 121 (1371)
+++|..||..+|+.+.+..... ........+. .++ .+++...++.|..||..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-------~~~----~v~~~~~~~~l~~~d~~tG~------------- 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-------DGG----RVYVASGDGNLYALDAKTGK------------- 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-------ETT----EEEEEETTSEEEEEETTTSE-------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-------eCC----EEEEEcCCCEEEEEECCCCC-------------
Confidence 4789999999999998886421 1112211221 233 56666689999999997643
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEE-ecCC--cceEEEEEeeccCCCCcEEEE
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPE--RCLLYSMKLWGDNLEALRIAS 198 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l-~~~~--~~~v~s~~~~~~s~d~~~Las 198 (1371)
......+.+..... . .. .+..++++..++.+..+|..+|+.+.+. .... ......... ..++..++.
T Consensus 58 ~~W~~~~~~~~~~~---~-~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 127 (238)
T PF13360_consen 58 VLWRFDLPGPISGA---P-VV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP---AVDGDRLYV 127 (238)
T ss_dssp EEEEEECSSCGGSG---E-EE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE---EEETTEEEE
T ss_pred EEEEeeccccccce---e-ee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCc---eEecCEEEE
Confidence 11112222111111 1 12 4456677778899999999999998774 3221 111111111 113678888
Q ss_pred EeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEeccc----------CCEEEEEEcCCC
Q 000654 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE----------GSIFRIEWSSCG 268 (1371)
Q Consensus 199 gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~----------~~I~~v~~spdg 268 (1371)
+..++.|..+|+.+ ++.+-...... ..+..-....++
T Consensus 128 ~~~~g~l~~~d~~t---------------------------------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (238)
T PF13360_consen 128 GTSSGKLVALDPKT---------------------------------GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG 174 (238)
T ss_dssp EETCSEEEEEETTT---------------------------------TEEEEEEESSTT-SS--EEEETTEEEEEECCTT
T ss_pred EeccCcEEEEecCC---------------------------------CcEEEEeecCCCCCCcceeeecccccceEEECC
Confidence 88899999999883 33333332221 112222222344
Q ss_pred CEEEEEeCCCc-EEEEEccCCcccCCCCceeeeceEeecCCccEEE-EEEcCCEEEEEeCCCeEEEEeC-CCcEEE
Q 000654 269 SKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD-CCLTDSFIITAGEDCTCRVWGS-DGKQLK 341 (1371)
Q Consensus 269 ~~LaS~s~Dg~-VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~-l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~ 341 (1371)
.+..++.++. +.+ |+.+++. ........+.. ....+..|+.++.++.+..||+ +|+.+.
T Consensus 175 -~v~~~~~~g~~~~~-d~~tg~~------------~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 175 -RVYVSSGDGRVVAV-DLATGEK------------LWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -EEEEECCTSSEEEE-ETTTTEE------------EEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred -EEEEEcCCCeEEEE-ECCCCCE------------EEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 6666776775 555 8888764 11111222333 4445788888889999999999 777654
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.87 E-value=0.00015 Score=82.23 Aligned_cols=154 Identities=17% Similarity=0.073 Sum_probs=104.5
Q ss_pred CCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCC
Q 000654 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (1371)
Q Consensus 190 s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~ 269 (1371)
++.+.+||.+..+....++++..... ..+.+..... ...-+++.|..+..
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~-----------------------------~~kl~~~~~v-~~~~~ai~~~~~~~ 120 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPK-----------------------------GAKLLDVSCV-PKRPTAISFIREDT 120 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCC-----------------------------cceeeeEeec-ccCcceeeeeeccc
Confidence 67788889888888888888872100 0112222111 12223334433333
Q ss_pred E---EEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeC-CCcEEEE-
Q 000654 270 K---LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKM- 342 (1371)
Q Consensus 270 ~---LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~- 342 (1371)
. .-..++...+.+|....+.. ....||-..+++++++ +++|+|+..|..|||-.+ ....+..
T Consensus 121 sv~v~dkagD~~~~di~s~~~~~~-----------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 121 SVLVADKAGDVYSFDILSADSGRC-----------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred eEEEEeecCCceeeeeecccccCc-----------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh
Confidence 3 33455666777777665443 3778999999999998 689999999999999888 3344444
Q ss_pred EeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc-CCCCccccc
Q 000654 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLE 386 (1371)
Q Consensus 343 l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl-~~~~~~~l~ 386 (1371)
+-+|+. =|..++.-++ ..|+++|.|+++++||+ +++++.++.
T Consensus 190 clGH~e-FVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 190 CLGHKE-FVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ccccHh-heeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 456888 4999998765 56899999999999999 556665443
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.85 E-value=0.0025 Score=71.31 Aligned_cols=213 Identities=13% Similarity=0.072 Sum_probs=125.0
Q ss_pred CCccEEEEeCCCCc------c---cCcEEEEEEEecCCCCCCCCEEEEE-eCCcEEEEECCCCeEEEEEEeecCccEEEE
Q 000654 2 GKKDLSEWRLDVGQ------Y---LGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGI 71 (1371)
Q Consensus 2 ~D~tV~iWdl~~~~------h---~~~Vtavafs~~pd~~~~~~llaaG-~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i 71 (1371)
++++|..||+.+|+ . .....+..+. . +..++++ .++.|..||..+|+.+.++..... +...
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~-----~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~ 71 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--D-----GGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGA 71 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--E-----TTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSG
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE--e-----CCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccce
Confidence 47899999998887 1 1222322332 2 3455555 579999999999999988875222 2111
Q ss_pred EeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeee-eeeeccCCCCcEEEEEEEeecCCCcEE
Q 000654 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS-LVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1371)
Q Consensus 72 ~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~-~~~~l~gh~~~I~~v~fsp~~~dg~~L 150 (1371)
... .++ .+++...++.+..+|..++. +..+ ......... -........ .+..+
T Consensus 72 ~~~-------~~~----~v~v~~~~~~l~~~d~~tG~-----------~~W~~~~~~~~~~~-~~~~~~~~~---~~~~~ 125 (238)
T PF13360_consen 72 PVV-------DGG----RVYVGTSDGSLYALDAKTGK-----------VLWSIYLTSSPPAG-VRSSSSPAV---DGDRL 125 (238)
T ss_dssp EEE-------ETT----EEEEEETTSEEEEEETTTSC-----------EEEEEEE-SSCTCS-TB--SEEEE---ETTEE
T ss_pred eee-------ccc----ccccccceeeeEecccCCcc-----------eeeeeccccccccc-cccccCceE---ecCEE
Confidence 111 233 56777778899999977643 1122 111111111 122233333 46778
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCcce----------EEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCC
Q 000654 151 AIGCSDNSIRVWDISNSSIILEVHSPERCL----------LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1371)
Q Consensus 151 atgs~Dg~I~vWd~~~~~~~~~l~~~~~~~----------v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~ 220 (1371)
+.+..++.|..+|+.+|+.+.......... ...+. ..++ .++.++.++.+..+|..
T Consensus 126 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~v~~~~~~g~~~~~d~~--------- 191 (238)
T PF13360_consen 126 YVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV----ISDG-RVYVSSGDGRVVAVDLA--------- 191 (238)
T ss_dssp EEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE----CCTT-EEEEECCTSSEEEEETT---------
T ss_pred EEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceE----EECC-EEEEEcCCCeEEEEECC---------
Confidence 888889999999999999987776533111 11111 1234 66667767754433877
Q ss_pred CCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 000654 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1371)
Q Consensus 221 ~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~ 290 (1371)
+++.+-... ...+..+ ...++..|+.++.++.+..||+.+++.
T Consensus 192 ------------------------tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 192 ------------------------TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp ------------------------TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred ------------------------CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 333222221 1222221 346778888888999999999999864
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.85 E-value=0.02 Score=63.07 Aligned_cols=234 Identities=10% Similarity=0.054 Sum_probs=125.2
Q ss_pred CCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEE
Q 000654 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1371)
Q Consensus 82 pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~v 161 (1371)
++| .+||+--|..|.|=..+.+- ..+..++ +..+.-.-.=+.++|+| |+..||.+...|+|++
T Consensus 7 ~~G----k~lAi~qd~~iEiRsa~Ddf---------~si~~kc-qVpkD~~PQWRkl~WSp---D~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 7 SDG----KLLAILQDQCIEIRSAKDDF---------SSIIGKC-QVPKDPNPQWRKLAWSP---DCTLLAYAESTGTIRV 69 (282)
T ss_pred CCC----cEEEEEeccEEEEEeccCCc---------hheeEEE-ecCCCCCchheEEEECC---CCcEEEEEcCCCeEEE
Confidence 777 78888888888877665432 1111222 11111112347899999 9999999999999999
Q ss_pred EECCCCeEEEEEecC------CcceEEEEEeeccCCC---CcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000654 162 WDISNSSIILEVHSP------ERCLLYSMKLWGDNLE---ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1371)
Q Consensus 162 Wd~~~~~~~~~l~~~------~~~~v~s~~~~~~s~d---~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1371)
+|+... .+..+... ..+.+..+.|.....+ ...|+.-+.+|.++-+-+..+...
T Consensus 70 fdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q---------------- 132 (282)
T PF15492_consen 70 FDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ---------------- 132 (282)
T ss_pred Eecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC----------------
Confidence 999653 33333321 1233334444322111 113444455666666655311000
Q ss_pred CcceeeecccccceeeEEEEec-ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccE
Q 000654 233 DFKCFKLQDQQHTAVNLFRLVG-HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1371)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~l~g-H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I 311 (1371)
.........+.. +...|.++.|+|..++|+.|+.... .++.. ..-...+
T Consensus 133 ----------~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s--------------~a~~~GL 182 (282)
T PF15492_consen 133 ----------GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMS--------------KASSCGL 182 (282)
T ss_pred ----------cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCccc--------------cccccCc
Confidence 011222223333 4778999999999888877664322 00000 0001111
Q ss_pred EEEEEc---CCE-EEEEeCCCe------EEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 312 WDCCLT---DSF-IITAGEDCT------CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 312 ~~l~~s---~~~-L~Sgs~Dg~------I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
++=..- |-+ .++..+|.. -.+|.+..-.+...+......|..+..||||..||+...+|.|.+|++..
T Consensus 183 taWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 183 TAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred eEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 111110 211 122232322 12333311111122233344799999999999999999999999999954
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.0054 Score=72.10 Aligned_cols=277 Identities=10% Similarity=0.116 Sum_probs=152.3
Q ss_pred EEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-----
Q 000654 21 SALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----- 95 (1371)
Q Consensus 21 tavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g----- 95 (1371)
+-+.|| |- |.||++-.-.-|.+|-=++-..++.|. |. .|.-+.|| |.- .+|++++
T Consensus 214 tyv~wS--P~----GTYL~t~Hk~GI~lWGG~~f~r~~RF~-Hp--~Vq~idfS-------P~E----kYLVT~s~~p~~ 273 (698)
T KOG2314|consen 214 TYVRWS--PK----GTYLVTFHKQGIALWGGESFDRIQRFY-HP--GVQFIDFS-------PNE----KYLVTYSPEPII 273 (698)
T ss_pred eeEEec--CC----ceEEEEEeccceeeecCccHHHHHhcc-CC--CceeeecC-------Ccc----ceEEEecCCccc
Confidence 788999 98 899999888889999866666666655 33 58889999 764 6777765
Q ss_pred -------CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe
Q 000654 96 -------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1371)
Q Consensus 96 -------d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~ 168 (1371)
...+.|||+.++....+ +. .++.-.-.-.-..||. |++++|.-.. ++|.||+..+..
T Consensus 274 ~~~~d~e~~~l~IWDI~tG~lkrs---------F~---~~~~~~~~WP~frWS~---DdKy~Arm~~-~sisIyEtpsf~ 337 (698)
T KOG2314|consen 274 VEEDDNEGQQLIIWDIATGLLKRS---------FP---VIKSPYLKWPIFRWSH---DDKYFARMTG-NSISIYETPSFM 337 (698)
T ss_pred cCcccCCCceEEEEEccccchhcc---------ee---ccCCCccccceEEecc---CCceeEEecc-ceEEEEecCcee
Confidence 16899999998541110 11 1111111112356777 8999987665 679999886643
Q ss_pred EEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceee
Q 000654 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1371)
Q Consensus 169 ~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1371)
++-. +.-. +..+.-+.++|.+.+|| .|...+..+... +.+-.. .+.+.
T Consensus 338 lld~-Kslk---i~gIr~FswsP~~~llA---------Ywtpe~~~~par------------------vtL~ev-Ps~~~ 385 (698)
T KOG2314|consen 338 LLDK-KSLK---ISGIRDFSWSPTSNLLA---------YWTPETNNIPAR------------------VTLMEV-PSKRE 385 (698)
T ss_pred eecc-cccC---CccccCcccCCCcceEE---------EEcccccCCcce------------------EEEEec-Cccce
Confidence 3211 1000 11111122255544443 455442211100 000000 02222
Q ss_pred EEEEecccCCEEEEEEcCCCCEEEEEe----------CCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-
Q 000654 249 LFRLVGHEGSIFRIEWSSCGSKLVSVS----------DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (1371)
Q Consensus 249 ~~~l~gH~~~I~~v~~spdg~~LaS~s----------~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s- 317 (1371)
+....-|.-.=..+.|-.+|.+|+.-- .-..+-|+.++....+ +. ...-...|...+|.
T Consensus 386 iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp----ve------~velke~vi~FaWEP 455 (698)
T KOG2314|consen 386 IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP----VE------VVELKESVIAFAWEP 455 (698)
T ss_pred eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC----ce------eeecchheeeeeecc
Confidence 333222333333456667777776421 1123556666554432 21 22234556677776
Q ss_pred -CCEEEEEe---CCCeEEEEeCC--C---cEEEEEeeccCcCEEEEEEcCCCCEEEEEE---CCCcEEEEEcC
Q 000654 318 -DSFIITAG---EDCTCRVWGSD--G---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAG---FDSAIKVHQFQ 378 (1371)
Q Consensus 318 -~~~L~Sgs---~Dg~I~VWd~~--g---~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg---~Dg~I~lwdl~ 378 (1371)
++.+++-+ ...++.+|.+. . +.+..+.. ...+.+.|+|.|++++.++ ..|.+.++|++
T Consensus 456 ~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 456 HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred CCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 44444432 23568888873 2 22333332 2467899999999887654 57889999885
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.80 E-value=6e-05 Score=58.29 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=35.8
Q ss_pred eeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEE
Q 000654 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1371)
Q Consensus 123 ~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd 163 (1371)
+++.++.+|.+.|.+++|+| ++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~---~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSP---DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEET---TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEec---ccccceeeCCCCEEEEEC
Confidence 56788899999999999999 999999999999999997
No 300
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.79 E-value=0.00038 Score=85.67 Aligned_cols=179 Identities=10% Similarity=0.105 Sum_probs=130.4
Q ss_pred CcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCC
Q 000654 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1371)
Q Consensus 147 g~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s 226 (1371)
+..++.|+-...+..+|+.+.+..+........ +.-++. ++..+.+|...|+|.+-|.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR~-----Nnr~lf~G~t~G~V~LrD~~--------------- 205 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMRY-----NNRNLFCGDTRGTVFLRDPN--------------- 205 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCc-eEEEEe-----cCcEEEeecccceEEeecCC---------------
Confidence 356777877778888899888876665543322 333432 57899999999999999998
Q ss_pred CCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC---------CCcEEEEEccCCcccCCCCce
Q 000654 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---------DRSARIWEVRAEYWKDSDSIE 297 (1371)
Q Consensus 227 ~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~---------Dg~VriWdl~~~~~~~~~~~~ 297 (1371)
+.+.++.+..|++.|..+. -.|+.|++|+. |.-|++||++..+. +.
T Consensus 206 ------------------s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-----l~ 260 (1118)
T KOG1275|consen 206 ------------------SFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-----LS 260 (1118)
T ss_pred ------------------cCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhc-----cC
Confidence 7888999999999997655 47889999875 67789999998765 22
Q ss_pred eeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeC---CCcEEEEEeecc-CcCEEEEEEcCCCCEEEEEECCC
Q 000654 298 EVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---DGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFDS 370 (1371)
Q Consensus 298 ~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~---~g~~l~~l~~h~-~~~V~sl~~spdg~~L~Tgg~Dg 370 (1371)
++. -+.+ ..-+.|. ...++.++..|...+-|. ...+...+..+. +..+.+++++++++.++.|..+|
T Consensus 261 PI~-----~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g 334 (1118)
T KOG1275|consen 261 PIQ-----FPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEG 334 (1118)
T ss_pred Ccc-----cccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccC
Confidence 221 1111 1334555 367889999999999984 222233333332 22499999999999999999999
Q ss_pred cEEEEEc
Q 000654 371 AIKVHQF 377 (1371)
Q Consensus 371 ~I~lwdl 377 (1371)
.|.+|.-
T Consensus 335 ~v~~wa~ 341 (1118)
T KOG1275|consen 335 HVNLWAD 341 (1118)
T ss_pred cEeeecC
Confidence 9999984
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.78 E-value=0.0098 Score=72.25 Aligned_cols=262 Identities=9% Similarity=0.041 Sum_probs=143.9
Q ss_pred CEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEE-EEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCC
Q 000654 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHG-ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1371)
Q Consensus 36 ~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~-i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~ 114 (1371)
++++.+.++.|..+|.++|+++.+.+.. + .+.+ ..+ .++ .+++..+++.+.-+|.+++.
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~-~-~~~ssP~v--------~~~----~v~v~~~~g~l~ald~~tG~------ 181 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVA-G-EALSRPVV--------SDG----LVLVHTSNGMLQALNESDGA------ 181 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCC-C-ceecCCEE--------ECC----EEEEECCCCEEEEEEccCCC------
Confidence 4444444799999999999998877642 2 2221 111 233 56666678889999987643
Q ss_pred CCccceeeeeeeeccCCCCcEEEE--EEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEec--CCcc-eEEEEEeecc
Q 000654 115 QPETCVNLSLVQSLPRLSHWVFDV--CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS--PERC-LLYSMKLWGD 189 (1371)
Q Consensus 115 ~~~~~v~~~~~~~l~gh~~~I~~v--~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~--~~~~-~v~s~~~~~~ 189 (1371)
.+-..... .+...+ .-+|.- .+..++.+..++.+..+|..+|+.+-+... +... ....+.-...
T Consensus 182 ---------~~W~~~~~-~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~ 250 (394)
T PRK11138 182 ---------VKWTVNLD-VPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDT 250 (394)
T ss_pred ---------EeeeecCC-CCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCC
Confidence 11111100 000000 001100 123466677889999999998887654331 1100 0000000000
Q ss_pred CC--CCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCC
Q 000654 190 NL--EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (1371)
Q Consensus 190 s~--d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spd 267 (1371)
+| .+..++.++.+|.+...|..+++. +|... + + ....+. ..
T Consensus 251 sP~v~~~~vy~~~~~g~l~ald~~tG~~-----------------------~W~~~--------~-~---~~~~~~--~~ 293 (394)
T PRK11138 251 TPVVVGGVVYALAYNGNLVALDLRSGQI-----------------------VWKRE--------Y-G---SVNDFA--VD 293 (394)
T ss_pred CcEEECCEEEEEEcCCeEEEEECCCCCE-----------------------EEeec--------C-C---CccCcE--EE
Confidence 11 244677777889999999873211 12111 0 0 011111 24
Q ss_pred CCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC-CCcEEEEEeec
Q 000654 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1371)
Q Consensus 268 g~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h 346 (1371)
+..+..++.++.+..+|..+++.. .+ . ....+ ....+....+..|+.++.||.+.+.|. +|+.+...+..
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~----W~--~--~~~~~-~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVEL----WS--Q--SDLLH-RLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEE----Ec--c--cccCC-CcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 567777888999999998876541 00 0 00011 112223334788999999999999999 89888777654
Q ss_pred cCcCEEE-EEEcCCCCEEEEEECCCcEEEEEc
Q 000654 347 IGRGIWR-CLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 347 ~~~~V~s-l~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
.. .+.+ ..+ .+..|+.++.||.+..+++
T Consensus 365 ~~-~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 365 SS-GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CC-cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 33 2332 223 2447888899999888764
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.70 E-value=0.11 Score=58.74 Aligned_cols=211 Identities=13% Similarity=0.026 Sum_probs=124.0
Q ss_pred eEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC
Q 000654 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1371)
Q Consensus 89 ~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~ 167 (1371)
.++.+.- .+.|..|+..... .....+.+ ...+++.. .+ ..|+.+..++ +.++|..++
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~~--------------~~~~~~~~----~~G~~~~~--~~-g~l~v~~~~~-~~~~d~~~g 70 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTGE--------------VEVIDLPG----PNGMAFDR--PD-GRLYVADSGG-IAVVDPDTG 70 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTE--------------EEEEESSS----EEEEEEEC--TT-SEEEEEETTC-EEEEETTTT
T ss_pred EEEEEEcCCCEEEEEECCCCe--------------EEEEecCC----CceEEEEc--cC-CEEEEEEcCc-eEEEecCCC
Confidence 5655553 7889888887532 11222222 77888873 15 4455555544 566699888
Q ss_pred eEEEEEec---C-CcceEEEEEeeccCCCCcEEEEEeCC--------CeEEEEEcccCCccccCCCCCCCCCCCCCCCcc
Q 000654 168 SIILEVHS---P-ERCLLYSMKLWGDNLEALRIASGTIY--------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1371)
Q Consensus 168 ~~~~~l~~---~-~~~~v~s~~~~~~s~d~~~Lasgs~d--------g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1371)
+....... . .......+.+ .++|.+.++.... |.|..++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~v---d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------------------------ 123 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAV---DPDGNLYVTDSGGGGASGIDPGSVYRIDPD------------------------ 123 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE----TTS-EEEEEECCBCTTCGGSEEEEEEETT------------------------
T ss_pred cEEEEeeccCCCcccCCCceEEE---cCCCCEEEEecCCCccccccccceEEECCC------------------------
Confidence 65443332 1 3334455555 6677766664432 233333332
Q ss_pred eeeecccccceeeEEEEecccCCEEEEEEcCCCCEEE-EEeCCCcEEEEEccCCcccCCCCceeeec-eEeecCCccEEE
Q 000654 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWD 313 (1371)
Q Consensus 236 ~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~La-S~s~Dg~VriWdl~~~~~~~~~~~~~~~~-~~~~gh~~~I~~ 313 (1371)
++ +..+...-...+.|+|+|+++.|+ +-+..+.|..+++...... +..... ..+..-.+..-.
T Consensus 124 ----------~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~g~pDG 188 (246)
T PF08450_consen 124 ----------GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE----LSNRRVFIDFPGGPGYPDG 188 (246)
T ss_dssp ----------SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC----EEEEEEEEE-SSSSCEEEE
T ss_pred ----------Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc----eeeeeeEEEcCCCCcCCCc
Confidence 11 222233356678999999998765 6677788888888643320 111110 012222234778
Q ss_pred EEEc--CCEEEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEE-cCCCCEEE
Q 000654 314 CCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLY-DSLSSLLV 364 (1371)
Q Consensus 314 l~~s--~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~-spdg~~L~ 364 (1371)
+++. +++.++....+.|.+++.+|+.+..+..... .+++++| -++.+.|.
T Consensus 189 ~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~-~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 189 LAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVP-RPTNCAFGGPDGKTLY 241 (246)
T ss_dssp EEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSS-SEEEEEEESTTSSEEE
T ss_pred ceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCC-CEEEEEEECCCCCEEE
Confidence 8887 5666776788999999999999988877745 5999999 46655443
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.69 E-value=0.0057 Score=67.25 Aligned_cols=201 Identities=12% Similarity=0.147 Sum_probs=111.7
Q ss_pred EEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEee------cCccEEEEEeeccccccCCCCcceeeEEEE
Q 000654 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF------HGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1371)
Q Consensus 21 tavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~------~~~~I~~i~~s~~~~~~~pdg~~~~~~la~ 93 (1371)
.-++|| || +.+||.+. .|+|++||+.... +..+... -...|.++.|..... .+. -...+++.
T Consensus 47 Rkl~WS--pD----~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~--s~~--ws~ELlvi 115 (282)
T PF15492_consen 47 RKLAWS--PD----CTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKK--SAQ--WSYELLVI 115 (282)
T ss_pred eEEEEC--CC----CcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeecccc--ccc--cceeEEEE
Confidence 678999 99 78888887 5999999986533 3333321 124688888863311 111 01246666
Q ss_pred ECCCeEEEEEeccCCCCCCCCCCccceeeeeeee--c-cCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEE
Q 000654 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS--L-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1371)
Q Consensus 94 ~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~--l-~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~ 170 (1371)
.-.|.++=|-+..+.. .. .+..+. + ..+...|.++.++| ..++|++|+.... +.+.
T Consensus 116 ~Y~G~L~Sy~vs~gt~--q~--------y~e~hsfsf~~~yp~Gi~~~vy~p---~h~LLlVgG~~~~------~~~~-- 174 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTN--QG--------YQENHSFSFSSHYPHGINSAVYHP---KHRLLLVGGCEQN------QDGM-- 174 (282)
T ss_pred eccceeeeEEEEcccC--Cc--------ceeeEEEEecccCCCceeEEEEcC---CCCEEEEeccCCC------CCcc--
Confidence 6677787777653220 01 222222 2 23467899999999 7777777765322 0000
Q ss_pred EEEecCCcceEEEEEeeccCCCCcEEEEEeCCCe------EEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccc
Q 000654 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE------IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1371)
Q Consensus 171 ~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~------I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~ 244 (1371)
.....+.+.+-++...+|.-..+. ...++. ..+|.+-
T Consensus 175 ---s~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~--------------------------------- 217 (282)
T PF15492_consen 175 ---SKASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKRRGLLRIP--------------------------------- 217 (282)
T ss_pred ---ccccccCceEEEEcCCCCcEEEcc-ccCccccccccccceeecc---------------------------------
Confidence 001122223333332233222211 111111 0111111
Q ss_pred ceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 000654 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1371)
Q Consensus 245 ~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~ 290 (1371)
..........-...|+.|..||||..||+...+|.|.+|++..-+.
T Consensus 218 ~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 218 SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 1111112223467899999999999999999999999999987654
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=2.6e-05 Score=94.45 Aligned_cols=193 Identities=13% Similarity=0.152 Sum_probs=130.3
Q ss_pred ccCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
+....||++|+ -+ .+.|+.|. .|.|++|++.+|......++|.. +|+-+..+ .||. .++.++
T Consensus 1100 ~~~~fTc~afs--~~----~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-avT~vePs-------~dgs---~~Ltss 1162 (1516)
T KOG1832|consen 1100 ETALFTCIAFS--GG----TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-AVTLVEPS-------VDGS---TQLTSS 1162 (1516)
T ss_pred cccceeeEEee--cC----CceEEeeeccceEEEEEccCcccccccccccc-cccccccc-------CCcc---eeeeec
Confidence 45678999999 65 78999998 79999999999999999998876 89999888 7773 555544
Q ss_pred C--CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEE
Q 000654 95 G--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1371)
Q Consensus 95 g--d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~ 172 (1371)
. .--..+|++..- +...+.+. .-.++.|+. .-..-+.|..-..+.+||++++..+.+
T Consensus 1163 s~S~PlsaLW~~~s~--------------~~~~Hsf~----ed~~vkFsn---~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST--------------GGPRHSFD----EDKAVKFSN---SLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred cccCchHHHhccccc--------------cCcccccc----ccceeehhh---hHHHHHhcccccceEEEecccCcHHHH
Confidence 3 346789998642 22333332 335788876 322233444445689999999988777
Q ss_pred EecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEE
Q 000654 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1371)
Q Consensus 173 l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1371)
+..+.-..-|+-.+..++|...+++--+ .+||++ ..+.++.|
T Consensus 1222 ylt~~~~~~y~~n~a~FsP~D~LIlndG-----vLWDvR---------------------------------~~~aIh~F 1263 (1516)
T KOG1832|consen 1222 YLTDTVTSSYSNNLAHFSPCDTLILNDG-----VLWDVR---------------------------------IPEAIHRF 1263 (1516)
T ss_pred hcCcchhhhhhccccccCCCcceEeeCc-----eeeeec---------------------------------cHHHHhhh
Confidence 5544433444444555688877776432 579988 23334444
Q ss_pred ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 000654 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1371)
Q Consensus 253 ~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~ 290 (1371)
...+..+. =.|+|.|..++.-+. |||+++-+.
T Consensus 1264 D~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1264 DQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred hhheeccc-ccccCCCceEEeech-----hhhhHHHHH
Confidence 33332222 248999998887664 899998654
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.00018 Score=79.57 Aligned_cols=165 Identities=17% Similarity=0.207 Sum_probs=112.6
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCC
Q 000654 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1371)
Q Consensus 151 atgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~ 230 (1371)
++.+.+..|.+-|+++|.... +. .+..++++.| ...+.++..|...|.|.+.|++..
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~--sksDVfAlQf---~~s~nLv~~GcRngeI~~iDLR~r----------------- 284 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQ--SKSDVFALQF---AGSDNLVFNGCRNGEIFVIDLRCR----------------- 284 (425)
T ss_pred ecccccceeEEEEeecccccc-cc--cchhHHHHHh---cccCCeeEecccCCcEEEEEeeec-----------------
Confidence 444556677788888775422 21 2334555555 344679999999999999999822
Q ss_pred CCCcceeeecccccceeeEEEEecccCCEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCc
Q 000654 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1371)
Q Consensus 231 ~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~sp-dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~ 309 (1371)
.+..+.+.+.+ -|...|+++.... ++++|.+.+.+|+|++||.+.-+.. .-+ ....||-.
T Consensus 285 -----------nqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~-----~~V--~qYeGHvN 345 (425)
T KOG2695|consen 285 -----------NQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK-----KSV--MQYEGHVN 345 (425)
T ss_pred -----------ccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc-----cce--eeeecccc
Confidence 11133444444 4999999998877 7889999999999999999976552 111 36677755
Q ss_pred cEEEEEEc----CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccC---cCEEEEEEc
Q 000654 310 RVWDCCLT----DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG---RGIWRCLYD 357 (1371)
Q Consensus 310 ~I~~l~~s----~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~---~~V~sl~~s 357 (1371)
.-.-+-++ ...+++++.|+..|||.+ .|..+.+++-... .-+++++|.
T Consensus 346 ~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 346 LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 43333333 478899999999999999 7888877654322 025566653
No 306
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.64 E-value=0.0061 Score=65.73 Aligned_cols=224 Identities=15% Similarity=0.075 Sum_probs=137.8
Q ss_pred eEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC
Q 000654 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1371)
Q Consensus 89 ~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~ 167 (1371)
..|+.+| .|.+.+|.+.+.. ..+.....|...|.-+.=.- .....+..++.|.++++.++..+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~--------------~h~~~cd~snn~v~~~~r~c--d~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTND--------------GHLYQCDVSNNDVTLVKRYC--DLKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred cEEEeccccceeeeecccCcc--------------cceeeecccccchhhhhhhc--ccccceeeccCCcceeEEEEecC
Confidence 3666665 6999999988633 11222222322221111000 01123667888999999988765
Q ss_pred eEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccccee
Q 000654 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1371)
Q Consensus 168 ~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~ 247 (1371)
.....+..+. -...++.+ ++++.++++.+....|-.|.+... ...
T Consensus 149 s~~~~~h~~~-~~~ns~~~---snd~~~~~~Vgds~~Vf~y~id~~-------------------------------sey 193 (344)
T KOG4532|consen 149 SNKFAVHNQN-LTQNSLHY---SNDPSWGSSVGDSRRVFRYAIDDE-------------------------------SEY 193 (344)
T ss_pred cccceeeccc-cceeeeEE---cCCCceEEEecCCCcceEEEeCCc-------------------------------cce
Confidence 5444443332 12455655 889999999999999999988710 111
Q ss_pred eEE-EEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC----CEEE
Q 000654 248 NLF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFII 322 (1371)
Q Consensus 248 ~~~-~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~----~~L~ 322 (1371)
... .....++.=++..|+.....+|++..||++.|||++....+ ..... .....|.+.+..+.|+. .+|+
T Consensus 194 ~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp----m~~~s-strp~hnGa~R~c~Fsl~g~lDLLf 268 (344)
T KOG4532|consen 194 IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP----MAEIS-STRPHHNGAFRVCRFSLYGLLDLLF 268 (344)
T ss_pred eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc----hhhhc-ccCCCCCCceEEEEecCCCcceEEE
Confidence 122 23345566788999999999999999999999999986542 22111 24456899999999982 4555
Q ss_pred EEeCCCeEEEEeC-CCcEEEEE-------eeccCcCEEEEEEcCCCCEEEEEEC
Q 000654 323 TAGEDCTCRVWGS-DGKQLKMI-------KEHIGRGIWRCLYDSLSSLLVTAGF 368 (1371)
Q Consensus 323 Sgs~Dg~I~VWd~-~g~~l~~l-------~~h~~~~V~sl~~spdg~~L~Tgg~ 368 (1371)
..-.-+.+.|-|+ +++-.+.+ ..|....|..-.|+.++.-+....+
T Consensus 269 ~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 269 ISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred EecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 5545567888888 55433322 2233324667777766554444433
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.54 E-value=0.034 Score=63.10 Aligned_cols=214 Identities=11% Similarity=0.096 Sum_probs=119.6
Q ss_pred EEEEEEEecCCCCCCCCEEEEEe--CCcEEEEECCCCeEEEEEEeecCccE-E-EEEeeccccccCCCCcceeeEEEEEC
Q 000654 20 ISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRL-H-GISCNFINCTEGSVSTRVTFEVALFG 95 (1371)
Q Consensus 20 Vtavafs~~pd~~~~~~llaaG~--dg~I~Iwd~~sg~~l~~~~~~~~~~I-~-~i~~s~~~~~~~pdg~~~~~~la~~g 95 (1371)
..+++.+ |+ ....++.+- +....+||+.+++.++.+...++ +- + .-.|| +||+ .++++-.
T Consensus 7 gH~~a~~--p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g-RHFyGHg~fs-------~dG~---~LytTEn 70 (305)
T PF07433_consen 7 GHGVAAH--PT---RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG-RHFYGHGVFS-------PDGR---LLYTTEN 70 (305)
T ss_pred ccceeeC--CC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC-CEEecCEEEc-------CCCC---EEEEecc
Confidence 3467777 74 145555555 57899999999999887765333 22 1 23588 9993 4444432
Q ss_pred -----CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC---------------
Q 000654 96 -----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS--------------- 155 (1371)
Q Consensus 96 -----d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~--------------- 155 (1371)
.|.|-|||... . ++.+..+..|.=.-..+.+.| |++.|+++-.
T Consensus 71 d~~~g~G~IgVyd~~~-~-------------~~ri~E~~s~GIGPHel~l~p---DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 71 DYETGRGVIGVYDAAR-G-------------YRRIGEFPSHGIGPHELLLMP---DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred ccCCCcEEEEEEECcC-C-------------cEEEeEecCCCcChhhEEEcC---CCCEEEEEcCCCccCcccCceecCh
Confidence 48899999983 2 566777777766677888999 9977777532
Q ss_pred ---CCcEEEEECCCCeEEEEEecCC---cceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCC
Q 000654 156 ---DNSIRVWDISNSSIILEVHSPE---RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1371)
Q Consensus 156 ---Dg~I~vWd~~~~~~~~~l~~~~---~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~ 229 (1371)
+.++...|..+|+.+.+..-+. .-.+..+++ ..++..++..-..| ... ...|+.....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~---~~~G~V~~a~Q~qg-------~~~-----~~~PLva~~~- 197 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV---DGDGTVAFAMQYQG-------DPG-----DAPPLVALHR- 197 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEe---cCCCcEEEEEecCC-------CCC-----ccCCeEEEEc-
Confidence 2245555666676666544322 111222322 34443333322111 100 0000000000
Q ss_pred CCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEE-EEEeCCCcEEEEEccCCcc
Q 000654 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYW 290 (1371)
Q Consensus 230 ~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~L-aS~s~Dg~VriWdl~~~~~ 290 (1371)
.++.++..... . .....-.+.|-+|++++++.++ +|+-.-+.+.+||..+++.
T Consensus 198 ---~g~~~~~~~~p--~---~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 198 ---RGGALRLLPAP--E---EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred ---CCCcceeccCC--h---HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 00001111100 0 0012234778999999999877 5555678899999998765
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.52 E-value=0.019 Score=65.05 Aligned_cols=197 Identities=14% Similarity=0.118 Sum_probs=119.2
Q ss_pred EEEEEEEeecCCCcEEEEEECCCc-EEEEECCCCeEEEEEecCCcceEEE-EEeeccCCCCcEEEEEeC-----CCeEEE
Q 000654 135 VFDVCFLKVCNGNRSLAIGCSDNS-IRVWDISNSSIILEVHSPERCLLYS-MKLWGDNLEALRIASGTI-----YNEIIV 207 (1371)
Q Consensus 135 I~~v~fsp~~~dg~~Latgs~Dg~-I~vWd~~~~~~~~~l~~~~~~~v~s-~~~~~~s~d~~~Lasgs~-----dg~I~v 207 (1371)
...++.+| .....++.+-.-|+ ..+||..+++....+..+..-..|. ..| ++||.+|++.-. .|.|-|
T Consensus 7 gH~~a~~p--~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~f---s~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 7 GHGVAAHP--TRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVF---SPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred ccceeeCC--CCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEE---cCCCCEEEEeccccCCCcEEEEE
Confidence 34677777 23455666666554 6789999999988887766554443 233 789999998643 478899
Q ss_pred EEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC-------CCcE
Q 000654 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-------DRSA 280 (1371)
Q Consensus 208 Wd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-------Dg~V 280 (1371)
||.. .....+..+..|.---..+.+.||++.|+.+-. .|..
T Consensus 82 yd~~--------------------------------~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~ 129 (305)
T PF07433_consen 82 YDAA--------------------------------RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRA 129 (305)
T ss_pred EECc--------------------------------CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCce
Confidence 9987 256677778777777788899999987776521 2222
Q ss_pred EE-----------EEccCCcccCCCCceeeeceEe--ecCCccEEEEEEc-CCEEEEEeCC-C-------eEEEEeCCCc
Q 000654 281 RI-----------WEVRAEYWKDSDSIEEVGSSVL--YGHNARVWDCCLT-DSFIITAGED-C-------TCRVWGSDGK 338 (1371)
Q Consensus 281 ri-----------Wdl~~~~~~~~~~~~~~~~~~~--~gh~~~I~~l~~s-~~~L~Sgs~D-g-------~I~VWd~~g~ 338 (1371)
++ -|..+++. ++. ..+ .-|...|..+++. ...++.|... | -+-+++. ++
T Consensus 130 kLNl~tM~psL~~ld~~sG~l-----l~q---~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~ 200 (305)
T PF07433_consen 130 KLNLDTMQPSLVYLDARSGAL-----LEQ---VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GG 200 (305)
T ss_pred ecChhhcCCceEEEecCCCce-----eee---eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CC
Confidence 22 23333322 111 123 3366667777776 2333333221 1 1333332 12
Q ss_pred EEEEEe-------eccCcCEEEEEEcCCCCEE-EEEECCCcEEEEEcC
Q 000654 339 QLKMIK-------EHIGRGIWRCLYDSLSSLL-VTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 339 ~l~~l~-------~h~~~~V~sl~~spdg~~L-~Tgg~Dg~I~lwdl~ 378 (1371)
.+..+. .-.+ -|-+|++++++.++ +|+=.-+.+.+||..
T Consensus 201 ~~~~~~~p~~~~~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 201 ALRLLPAPEEQWRRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred cceeccCChHHHHhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence 122221 1123 37899999999876 455568899999884
No 309
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0076 Score=73.20 Aligned_cols=152 Identities=13% Similarity=0.145 Sum_probs=99.3
Q ss_pred CCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCC
Q 000654 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1371)
Q Consensus 146 dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~ 225 (1371)
.+++|+.|++-|.+.+|+-..+.....-......++....+ +++..++|+|+..|.|.++.+.. ...+
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v---s~~e~lvAagt~~g~V~v~ql~~-~~p~-------- 111 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV---SSVEYLVAAGTASGRVSVFQLNK-ELPR-------- 111 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe---cchhHhhhhhcCCceEEeehhhc-cCCC--------
Confidence 78999999999999999987765543222222222333333 67788999999999999998872 1111
Q ss_pred CCCCCCCCcceeeecccccceeeEEEE-ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEe
Q 000654 226 HAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1371)
Q Consensus 226 s~~~~~~~~~~i~i~~~~~~~~~~~~l-~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~ 304 (1371)
....+... ..|...|+++.|++++..+.+|...|.|.+-.+..... ..... ..+
T Consensus 112 -------------------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~-~~~~~-----q~i 166 (726)
T KOG3621|consen 112 -------------------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQA-FLSKS-----QEI 166 (726)
T ss_pred -------------------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhh-hcccc-----cee
Confidence 11111111 23788999999999999999999999999988877311 00001 244
Q ss_pred ecCCccEEEEEEcCCEEEEEeCCCeEEEEeC
Q 000654 305 YGHNARVWDCCLTDSFIITAGEDCTCRVWGS 335 (1371)
Q Consensus 305 ~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~ 335 (1371)
..-...|..+.+...+|+.+.--.. .+++.
T Consensus 167 l~~ds~IVQlD~~q~~LLVStl~r~-~Lc~t 196 (726)
T KOG3621|consen 167 LSEDSEIVQLDYLQSYLLVSTLTRC-ILCQT 196 (726)
T ss_pred eccCcceEEeecccceehHhhhhhh-heeec
Confidence 5556778888877666655543332 34444
No 310
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.39 E-value=0.63 Score=56.54 Aligned_cols=224 Identities=9% Similarity=0.110 Sum_probs=124.8
Q ss_pred CCCcEEEEEEEeecCCCcEEEEEE-CCCcEEEEECCCC-----eEEEEEecCCcceEEEEEeeccCCCC----cEEEEEe
Q 000654 131 LSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWGDNLEA----LRIASGT 200 (1371)
Q Consensus 131 h~~~I~~v~fsp~~~dg~~Latgs-~Dg~I~vWd~~~~-----~~~~~l~~~~~~~v~s~~~~~~s~d~----~~Lasgs 200 (1371)
+.+.|.++.+.+ .+|+..- .++.+.+--+... +...++..-... +..+.+ ..|.+ ..|....
T Consensus 84 ~~d~isda~~t~-----~~i~~s~~~~~~lt~v~~~k~~~~~~~~~ekls~~d~k-i~~~~i--pg~~~rr~~r~l~~N~ 155 (545)
T PF11768_consen 84 ISDTISDAVITD-----SFILLSFLEQNKLTFVQFTKKVDNSPKRPEKLSALDPK-ISYVDI--PGPKGRRLERHLSVNS 155 (545)
T ss_pred ccccccceEecC-----CEEEEEEcCCCeEEEEEeecCCCCCccChhhccccCce-EEEEEC--CCCCCCccceeEeecc
Confidence 457788888865 5666665 6777776654321 111111111111 112222 12222 2455555
Q ss_pred CCCeEEEE-EcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcC-CCCEEEE----E
Q 000654 201 IYNEIIVW-KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVS----V 274 (1371)
Q Consensus 201 ~dg~I~vW-d~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~sp-dg~~LaS----~ 274 (1371)
....+.+| ....+ .+...+|.....+-.++.++......-.+.....-+....++.|+- +...+.| .
T Consensus 156 ~qDl~ivWW~~~~~-------e~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~ 228 (545)
T PF11768_consen 156 SQDLVIVWWPSAQD-------EVWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSI 228 (545)
T ss_pred CCCEEEEEecCCCC-------CcCCCCCccccchhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEec
Confidence 55555555 44311 1122223222223334455443322222222223345557778876 3344444 3
Q ss_pred eCCCcEE----EEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeCCCcEEEEEeeccC
Q 000654 275 SDDRSAR----IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG 348 (1371)
Q Consensus 275 s~Dg~Vr----iWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~ 348 (1371)
+.+|.+. +|++...+ ++.+. .+-...+..|.+++++ ...|+.|++||+|.+||...+..... ...-
T Consensus 229 s~~g~~~~d~ciYE~~r~k------lqrvs-vtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~ 300 (545)
T PF11768_consen 229 SVKGEPSADSCIYECSRNK------LQRVS-VTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEF 300 (545)
T ss_pred CCCCCceeEEEEEEeecCc------eeEEE-EEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecc
Confidence 3444433 35554432 34443 3556788899999998 58999999999999999843322222 2333
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 349 ~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
..+.++|+|+|.++++|+.-|.+.+||+.
T Consensus 301 -~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 301 -IPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred -cceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 47889999999999999999999999983
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.00085 Score=74.48 Aligned_cols=124 Identities=7% Similarity=0.118 Sum_probs=93.6
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEE---EcCCEEEEEeCCCeEE
Q 000654 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC---LTDSFIITAGEDCTCR 331 (1371)
Q Consensus 255 H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~---~s~~~L~Sgs~Dg~I~ 331 (1371)
-.+.|+++.|...++++..|...|.|...|++...+....+ ....-|...|+++. |++++|++.+.+|+|+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~------a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkik 324 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC------AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIK 324 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc------eEEEEcCcchhhhhhhccccceEeeccCcCcee
Confidence 45678889999889999999999999999999874422222 25567888888865 4589999999999999
Q ss_pred EEeC-CC---cEEEEEeeccCcCEEEEE--EcCCCCEEEEEECCCcEEEEEcC-CCCcccc
Q 000654 332 VWGS-DG---KQLKMIKEHIGRGIWRCL--YDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSL 385 (1371)
Q Consensus 332 VWd~-~g---~~l~~l~~h~~~~V~sl~--~spdg~~L~Tgg~Dg~I~lwdl~-~~~~~~l 385 (1371)
+||. -. +-+.++.+|-.. -.-+- +.+....++++|+|...|||.++ +.++.++
T Consensus 325 LyD~R~~K~~~~V~qYeGHvN~-~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 325 LYDLRATKCKKSVMQYEGHVNL-SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred Eeeehhhhcccceeeeeccccc-ccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 9998 33 348888888652 22222 35566788899999999999994 4444433
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.28 E-value=0.38 Score=54.19 Aligned_cols=217 Identities=9% Similarity=0.082 Sum_probs=127.5
Q ss_pred EEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEE
Q 000654 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (1371)
Q Consensus 22 avafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~ 100 (1371)
+++|. +. .+.++++.. ++.|..|+..+++... +.. . ...++++. .+++ .++++.. +.+.
T Consensus 4 gp~~d--~~---~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~-~~~G~~~~------~~~g----~l~v~~~-~~~~ 63 (246)
T PF08450_consen 4 GPVWD--PR---DGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--P-GPNGMAFD------RPDG----RLYVADS-GGIA 63 (246)
T ss_dssp EEEEE--TT---TTEEEEEETTTTEEEEEETTTTEEEE-EES--S-SEEEEEEE------CTTS----EEEEEET-TCEE
T ss_pred ceEEE--CC---CCEEEEEEcCCCEEEEEECCCCeEEE-Eec--C-CCceEEEE------ccCC----EEEEEEc-CceE
Confidence 45666 63 256666655 6999999998876532 221 2 36777776 1444 4555554 5556
Q ss_pred EEEeccCCCCCCCCCCccceeeeeeeecc--C-CCCcEEEEEEEeecCCCcEEEEEECC--------CcEEEEECCCCeE
Q 000654 101 LFELNFELSPNSQYQPETCVNLSLVQSLP--R-LSHWVFDVCFLKVCNGNRSLAIGCSD--------NSIRVWDISNSSI 169 (1371)
Q Consensus 101 vwdl~~~~~~~~~~~~~~~v~~~~~~~l~--g-h~~~I~~v~fsp~~~dg~~Latgs~D--------g~I~vWd~~~~~~ 169 (1371)
++|+.+.. .+.+.... . .....+++++.| +|.+.++.... +.|..++.. ++.
T Consensus 64 ~~d~~~g~-------------~~~~~~~~~~~~~~~~~ND~~vd~---~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~ 126 (246)
T PF08450_consen 64 VVDPDTGK-------------VTVLADLPDGGVPFNRPNDVAVDP---DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV 126 (246)
T ss_dssp EEETTTTE-------------EEEEEEEETTCSCTEEEEEEEE-T---TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred EEecCCCc-------------EEEEeeccCCCcccCCCceEEEcC---CCCEEEEecCCCccccccccceEEECCC-CeE
Confidence 66876533 34444432 2 345789999999 99877765543 446667766 443
Q ss_pred EEEEecCCcceEEEEEeeccCCCCcEEE-EEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceee
Q 000654 170 ILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1371)
Q Consensus 170 ~~~l~~~~~~~v~s~~~~~~s~d~~~La-sgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1371)
...... -.....+.+ ++++..|+ +-+..+.|..+++...... + .....
T Consensus 127 ~~~~~~--~~~pNGi~~---s~dg~~lyv~ds~~~~i~~~~~~~~~~~--------------------~------~~~~~ 175 (246)
T PF08450_consen 127 TVVADG--LGFPNGIAF---SPDGKTLYVADSFNGRIWRFDLDADGGE--------------------L------SNRRV 175 (246)
T ss_dssp EEEEEE--ESSEEEEEE---ETTSSEEEEEETTTTEEEEEEEETTTCC--------------------E------EEEEE
T ss_pred EEEecC--cccccceEE---CCcchheeecccccceeEEEeccccccc--------------------e------eeeee
Confidence 332222 122345555 67887665 5667788888888611000 0 01122
Q ss_pred EEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc
Q 000654 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (1371)
Q Consensus 249 ~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s 317 (1371)
...+..-.+..-.+++..+|++.++....+.|.+++.. ++. +. .+.-....+++++|.
T Consensus 176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~-----~~-----~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL-----LR-----EIELPVPRPTNCAFG 233 (246)
T ss_dssp EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE-----EE-----EEE-SSSSEEEEEEE
T ss_pred EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE-----EE-----EEcCCCCCEEEEEEE
Confidence 23333333458889999999988888888999999987 433 22 222234589999995
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0038 Score=71.66 Aligned_cols=237 Identities=14% Similarity=0.102 Sum_probs=149.4
Q ss_pred eEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC-CCcEEEEECCCC
Q 000654 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNS 167 (1371)
Q Consensus 89 ~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~-Dg~I~vWd~~~~ 167 (1371)
..+.+.-||.++.|.-.... -.+.+..+..|...|.+++.+. ++.++.|.+. |..++++|+++-
T Consensus 22 fiiqASlDGh~KFWkKs~is------------GvEfVKhFraHL~~I~sl~~S~---dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRIS------------GVEFVKHFRAHLGVILSLAVSY---DGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred eEEeeecchhhhhcCCCCcc------------ceeehhhhHHHHHHHHhhhccc---cceeEeeccCcccceeEEEeecc
Confidence 44444559999999865311 1456677888999999999998 9999999777 999999999876
Q ss_pred eEEEEEec--CCc--ceEEEEEeeccCCCC--cEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000654 168 SIILEVHS--PER--CLLYSMKLWGDNLEA--LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1371)
Q Consensus 168 ~~~~~l~~--~~~--~~v~s~~~~~~s~d~--~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1371)
..+..++. ..+ +++++ ..+. .+-++.-.++.+.|+|-...
T Consensus 87 DminmiKL~~lPg~a~wv~s------kGd~~s~IAVs~~~sg~i~VvD~~~d---------------------------- 132 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTS------KGDKISLIAVSLFKSGKIFVVDGFGD---------------------------- 132 (558)
T ss_pred chhhhcccccCCCceEEecC------CCCeeeeEEeecccCCCcEEECCcCC----------------------------
Confidence 55433221 111 11111 1111 22233446688888887610
Q ss_pred cccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCce-----eeeceEeecCCccEEEEEE
Q 000654 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE-----EVGSSVLYGHNARVWDCCL 316 (1371)
Q Consensus 242 ~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~-----~~~~~~~~gh~~~I~~l~~ 316 (1371)
..+....-.-|..+|..+.+++-+..++|....|.|.-|.....-+.....+. +.....+..-.....++.|
T Consensus 133 ---~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef 209 (558)
T KOG0882|consen 133 ---FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF 209 (558)
T ss_pred ---cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEE
Confidence 11223333459999999999999999999999999999998741110000000 0000112223455678888
Q ss_pred c--CCEEEEEeCCCeEEEEeC-CCcEEEEEe--------------------------------eccCcCEEEEEEcCCCC
Q 000654 317 T--DSFIITAGEDCTCRVWGS-DGKQLKMIK--------------------------------EHIGRGIWRCLYDSLSS 361 (1371)
Q Consensus 317 s--~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~--------------------------------~h~~~~V~sl~~spdg~ 361 (1371)
+ +..+.+-+.|..|+++++ +|+.++.+. .|....-+.+.|...++
T Consensus 210 sp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~ 289 (558)
T KOG0882|consen 210 SPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN 289 (558)
T ss_pred ccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC
Confidence 7 688899899999999998 664333221 12221234566777778
Q ss_pred EEEEEECCCcEEEEEcC
Q 000654 362 LLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 362 ~L~Tgg~Dg~I~lwdl~ 378 (1371)
+|+-|..= .|++.++.
T Consensus 290 flly~t~~-gikvin~~ 305 (558)
T KOG0882|consen 290 FLLYGTIL-GIKVINLD 305 (558)
T ss_pred EEEeecce-eEEEEEee
Confidence 77776554 36677764
No 314
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.18 E-value=0.031 Score=68.11 Aligned_cols=137 Identities=19% Similarity=0.226 Sum_probs=89.3
Q ss_pred EEEEEcCCEEEEEeCCCeEEEEeCCCcEEEEEee--ccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCC
Q 000654 312 WDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHP 389 (1371)
Q Consensus 312 ~~l~~s~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~--h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~ 389 (1371)
+++.-.+++++.|+.-|.+.+|+..+.....++. ..+ .+..+.++++..++|.|+..|.|.++.++....
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~-~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p------- 110 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATG-ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP------- 110 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccc-eEEEEEecchhHhhhhhcCCceEEeehhhccCC-------
Confidence 4555558999999999999999995544444433 333 356667888888999999999999998853211
Q ss_pred ccccccCCccEEEeeecCCccceeecc-CCCccEEEEEEecCC-cEEEEEcCCcEEEEEeecCCCce--eEEeEeecCCc
Q 000654 390 EAKEFNGRTEIFSIKIPNFSEQIRLTD-SKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVN--WNKILQVSEGM 465 (1371)
Q Consensus 390 ~~~~~~~~~~i~s~~~~~~~~~~~~~~-~~~~~V~~lafs~d~-~llv~t~~G~i~~~~l~~~~~~~--w~~i~~~~~~~ 465 (1371)
...++. ...+ .|...|++++|++++ +++.+.+.|++....+....... -..++ ..+.
T Consensus 111 -------~~~~~~----------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il--~~ds 171 (726)
T KOG3621|consen 111 -------RDLDYV----------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL--SEDS 171 (726)
T ss_pred -------Ccceee----------ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceee--ccCc
Confidence 111111 1111 266789999999999 56667788998877765411111 11222 3356
Q ss_pred cEEEEeecCC
Q 000654 466 PIICMDLLSN 475 (1371)
Q Consensus 466 ~I~~ld~~~~ 475 (1371)
+|.-+|....
T Consensus 172 ~IVQlD~~q~ 181 (726)
T KOG3621|consen 172 EIVQLDYLQS 181 (726)
T ss_pred ceEEeecccc
Confidence 7777777544
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0094 Score=73.31 Aligned_cols=184 Identities=13% Similarity=0.064 Sum_probs=123.8
Q ss_pred CCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcc
Q 000654 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 132 ~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~ 211 (1371)
.+.|.|++++. +.|+-|..+|.|++.+....- .+...+... ..+|.++++|+.||.|.|-.+.
T Consensus 39 ~D~is~~av~~-----~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 39 NDAISCCAVHD-----KFFALGTHRGAVYLTTCQGNP--KTNFDHSSS----------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hhHHHHHHhhc-----ceeeeccccceEEEEecCCcc--ccccccccc----------ccCCceEEEecCCCcEEEeecc
Confidence 46778888854 789999999999999875432 222222111 3579999999999999999887
Q ss_pred cCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCC-----CCEEEEEeCCCcEEEEEcc
Q 000654 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-----GSKLVSVSDDRSARIWEVR 286 (1371)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spd-----g~~LaS~s~Dg~VriWdl~ 286 (1371)
+......+. ...++.+|+++|+ .+.+++|+.-| +.++.-.
T Consensus 102 ---------------------------------~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 102 ---------------------------------TDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred ---------------------------------CCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence 233333332 4578999999997 46799999988 6666532
Q ss_pred CCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCc-----CEEEEEEcCCC
Q 000654 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-----GIWRCLYDSLS 360 (1371)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~-----~V~sl~~spdg 360 (1371)
--.. .. ...+..-.++|.++.|.++++|=++.+| |+|||. .++.+..+...... --..+.|.++.
T Consensus 147 wlgn-----k~---~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~ 217 (846)
T KOG2066|consen 147 WLGN-----KD---SVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED 217 (846)
T ss_pred hhcC-----cc---ceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC
Confidence 1111 00 0245566789999999999999998777 899999 66655555433321 12345566554
Q ss_pred CEEEEEECCCcEEEEEcC
Q 000654 361 SLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 361 ~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.|+.| .-.+|+|..++
T Consensus 218 -~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 218 -RLVIG-WGDSVKICSIK 233 (846)
T ss_pred -eEEEe-cCCeEEEEEEe
Confidence 44544 44588888885
No 316
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.15 E-value=0.24 Score=58.33 Aligned_cols=184 Identities=12% Similarity=0.135 Sum_probs=118.2
Q ss_pred CcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCC----CcEEEEEeC---------C-CeEEEEEcccCCccccCCCC
Q 000654 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE----ALRIASGTI---------Y-NEIIVWKVDWEHVAPLLNSP 222 (1371)
Q Consensus 157 g~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d----~~~Lasgs~---------d-g~I~vWd~~~~~~~~~~~~~ 222 (1371)
..|++.|..+.+.+..+.-+....+.++..+....+ ..+++.|+. . |.|.++++... +
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~---~----- 73 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES---P----- 73 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc---c-----
Confidence 358899998888887777666666777766665442 567887763 2 78888888721 0
Q ss_pred CCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeece
Q 000654 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1371)
Q Consensus 223 ~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~ 302 (1371)
......+.+... ...++|++|.-- ++. |+.+. ...|.+|++...+. +.. .
T Consensus 74 ------------------~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~-----l~~---~ 123 (321)
T PF03178_consen 74 ------------------ENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKT-----LLK---K 123 (321)
T ss_dssp ----------------------EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSS-----EEE---E
T ss_pred ------------------ccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCccc-----chh---h
Confidence 000012222222 357889998866 333 44433 36899999988761 121 1
Q ss_pred EeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC--CCcEEEEE-eeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 303 ~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~--~g~~l~~l-~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
........+.++...+++++.|.....+.++.+ .+..+..+ +......++++.|-++++.++.+..+|.+.++...
T Consensus 124 ~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 124 AFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred heecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 333344478888888899999998888888765 44434433 33334468888888666799999999999999985
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.12 E-value=0.007 Score=75.03 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=124.8
Q ss_pred CEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCCCCC
Q 000654 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQY 114 (1371)
Q Consensus 36 ~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~~~~ 114 (1371)
.++..|-...+..+|+.+.++.+...+..+ .|.-++-. + +.+.++. .|+|.+-|...
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-~v~imR~N---------n----r~lf~G~t~G~V~LrD~~s-------- 206 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSAS-GVTIMRYN---------N----RNLFCGDTRGTVFLRDPNS-------- 206 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCC-ceEEEEec---------C----cEEEeecccceEEeecCCc--------
Confidence 455545568899999999888777765443 45555543 2 3333333 69999999875
Q ss_pred CCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC---------CCcEEEEECCCCeEEEEEecCCcceEEEEE
Q 000654 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---------DNSIRVWDISNSSIILEVHSPERCLLYSMK 185 (1371)
Q Consensus 115 ~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~---------Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~ 185 (1371)
++.++++..|++.|.++.. .|+.|+++|. |.-|+|||++..+.+.-+..+.... -++
T Consensus 207 -------~~~iht~~aHs~siSDfDv-----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~--flr 272 (1118)
T KOG1275|consen 207 -------FETIHTFDAHSGSISDFDV-----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ--FLR 272 (1118)
T ss_pred -------Cceeeeeeccccceeeeec-----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch--hhh
Confidence 7889999999999998877 5688888876 6678999998877665554443321 123
Q ss_pred eeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEc
Q 000654 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (1371)
Q Consensus 186 ~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~s 265 (1371)
|++. -...++..+..|+..+-|..+-. + ....+..+.--...|.++.++
T Consensus 273 f~Ps--l~t~~~V~S~sGq~q~vd~~~ls------N-----------------------P~~~~~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 273 FHPS--LTTRLAVTSQSGQFQFVDTATLS------N-----------------------PPAGVKMVNPNGSGISAFDIS 321 (1118)
T ss_pred hccc--ccceEEEEecccceeeccccccC------C-----------------------CccceeEEccCCCcceeEEec
Confidence 3322 24567778888999988844100 0 011122222333458999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q 000654 266 SCGSKLVSVSDDRSARIWEV 285 (1371)
Q Consensus 266 pdg~~LaS~s~Dg~VriWdl 285 (1371)
++++.++.+..+|.|.+|.-
T Consensus 322 sn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 322 SNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCCceEEEecccCcEeeecC
Confidence 99999999999999999983
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.014 Score=71.47 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=76.5
Q ss_pred EEEEcCCCCEEEEEe----CCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEEEEEeCCCeEEEEe
Q 000654 261 RIEWSSCGSKLVSVS----DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWG 334 (1371)
Q Consensus 261 ~v~~spdg~~LaS~s----~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~I~VWd 334 (1371)
-+.|+|...+++.++ ..|+|.||--.. .. . .-...+-.+.+++|+| -.|+.|-+-|.+.+|.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadtG-EP-----q------r~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADTG-EP-----Q------RDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQK 87 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecCC-CC-----C------cccccceehhhhccChHHHHHhhccccceeEEEe
Confidence 356888888877665 357788875332 21 1 1111233456799996 4678888999999999
Q ss_pred CCCcEEEE-EeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 335 SDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 335 ~~g~~l~~-l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
...+...+ ...|.. +|..+.||++|..|+|+..-|.+.+|...
T Consensus 88 ~~~~e~htv~~th~a-~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETHTVVETHPA-PIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCceeeeeccCCCC-CceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 95444444 455777 79999999999999999999999999985
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.073 Score=66.31 Aligned_cols=194 Identities=10% Similarity=0.097 Sum_probs=119.7
Q ss_pred CCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCC-EEEEEEcCCC
Q 000654 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS-IFRIEWSSCG 268 (1371)
Q Consensus 190 s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~-I~~v~~spdg 268 (1371)
++.+..+|.|+.+|.|.+.+-. .+.++.+..+... |..+....+.
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------------~~~~~~fqa~~~siv~~L~~~~~~ 77 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS----------------------------------FQLIRGFQAYEQSIVQFLYILNKQ 77 (933)
T ss_pred cCCCceEEEeeccccEEEeccc----------------------------------ceeeehheecchhhhhHhhcccCc
Confidence 4567789999999988887754 3445667777766 4444444445
Q ss_pred CEEEEEeCCC-----cEEEEEccCCcccC-CCCceeeeceE-ee-cCCccEEEEEEc--CCEEEEEeCCCeEEEEeC---
Q 000654 269 SKLVSVSDDR-----SARIWEVRAEYWKD-SDSIEEVGSSV-LY-GHNARVWDCCLT--DSFIITAGEDCTCRVWGS--- 335 (1371)
Q Consensus 269 ~~LaS~s~Dg-----~VriWdl~~~~~~~-~~~~~~~~~~~-~~-gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~--- 335 (1371)
.+|++.+.|. .++||++..-.... +.++....... .. ..+.++.+++.+ -+.+|.|-.+|.|..+.-
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 7888887765 49999998754322 22221111001 11 135567888887 478999999999988853
Q ss_pred CCcEEE-EEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceee
Q 000654 336 DGKQLK-MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRL 414 (1371)
Q Consensus 336 ~g~~l~-~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~ 414 (1371)
..+-.+ .+....+.+|+.+++..++..++-+..-..|.+|.++++.+ ....
T Consensus 158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p----------------------------~~~~ 209 (933)
T KOG2114|consen 158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP----------------------------SLKV 209 (933)
T ss_pred hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc----------------------------ceee
Confidence 111112 23333344899999988887633333345788998865320 1122
Q ss_pred ccCCCccEEEEEEecCCcEEEEEcCCcEEEE
Q 000654 415 TDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1371)
Q Consensus 415 ~~~~~~~V~~lafs~d~~llv~t~~G~i~~~ 445 (1371)
.+.+...++|..|++...-++++....++++
T Consensus 210 ld~~G~~lnCss~~~~t~qfIca~~e~l~fY 240 (933)
T KOG2114|consen 210 LDNNGISLNCSSFSDGTYQFICAGSEFLYFY 240 (933)
T ss_pred eccCCccceeeecCCCCccEEEecCceEEEE
Confidence 3445567888888887664555556666644
No 320
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.02 E-value=0.46 Score=55.95 Aligned_cols=190 Identities=15% Similarity=0.172 Sum_probs=118.2
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC----------C-CeEEEEEeccCCCCCC
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----------E-KRVKLFELNFELSPNS 112 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g----------d-~sV~vwdl~~~~~~~~ 112 (1371)
..|++.|..+.+.+.++.-.....+.+++.-... .+......+++++. . |.|.++++....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~----~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~---- 73 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLK----GDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP---- 73 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEET----TS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEc----CccccccCEEEEEecccccccccccCcEEEEEEEEccc----
Confidence 4689999999999888887677678877655220 11000014455442 1 889999998631
Q ss_pred CCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe-EEEEEecCCcceEEEEEeeccCC
Q 000654 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNL 191 (1371)
Q Consensus 113 ~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~-~~~~l~~~~~~~v~s~~~~~~s~ 191 (1371)
....+++.+.... ..++|++++-.. +. |+.+. .+.|.+|++...+ .......+....+.++..
T Consensus 74 ----~~~~~l~~i~~~~-~~g~V~ai~~~~----~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~----- 137 (321)
T PF03178_consen 74 ----ENNFKLKLIHSTE-VKGPVTAICSFN----GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV----- 137 (321)
T ss_dssp --------EEEEEEEEE-ESS-EEEEEEET----TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-----
T ss_pred ----ccceEEEEEEEEe-ecCcceEhhhhC----CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-----
Confidence 0111355554443 468899998763 33 55444 5789999998887 555544444445666654
Q ss_pred CCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEE
Q 000654 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1371)
Q Consensus 192 d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~L 271 (1371)
.+++++.|+....+.++.++.. ......+. -.....+++++.|.++++.+
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~-----------------------------~~~l~~va-~d~~~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEE-----------------------------NNKLILVA-RDYQPRWVTAAEFLVDEDTI 187 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETT-----------------------------TE-EEEEE-EESS-BEEEEEEEE-SSSEE
T ss_pred cccEEEEEEcccCEEEEEEEcc-----------------------------CCEEEEEE-ecCCCccEEEEEEecCCcEE
Confidence 2569999999999999877610 00111221 12235668899998776799
Q ss_pred EEEeCCCcEEEEEccC
Q 000654 272 VSVSDDRSARIWEVRA 287 (1371)
Q Consensus 272 aS~s~Dg~VriWdl~~ 287 (1371)
+.+..+|.+.++....
T Consensus 188 i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTSEEEEEEE-S
T ss_pred EEEcCCCeEEEEEECC
Confidence 9999999999998864
No 321
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.00 E-value=0.16 Score=61.83 Aligned_cols=190 Identities=9% Similarity=0.091 Sum_probs=106.5
Q ss_pred cEEEEEEEeecCCCcE-EEEEEC---CCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEE-EeCC--CeEE
Q 000654 134 WVFDVCFLKVCNGNRS-LAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIY--NEII 206 (1371)
Q Consensus 134 ~I~~v~fsp~~~dg~~-Latgs~---Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Las-gs~d--g~I~ 206 (1371)
.+..-.|+| +|+. ++..+. +..|.++|+.+++...-.... .......+ +||+..|+. .+.+ ..|.
T Consensus 189 ~~~~p~wSp---DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~--g~~~~~~~---SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWAN---KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ--GMLVVSDV---SKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECC---CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC--CcEEeeEE---CCCCCEEEEEEccCCCcEEE
Confidence 778899999 8874 554333 356888999887654333222 12223334 788876654 3334 4566
Q ss_pred EEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC-CC--cEEEE
Q 000654 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR--SARIW 283 (1371)
Q Consensus 207 vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-Dg--~VriW 283 (1371)
++++. .+. ...+..+.+......|+|||+.|+-.++ .+ .|.+.
T Consensus 261 ~~dl~---------------------------------~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 261 LYDTN---------------------------------TKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EEECC---------------------------------CCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence 66665 121 2233333333344579999998776664 33 56667
Q ss_pred EccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCC---------CeEEEEeCCCcEEEEEeeccCcCEE
Q 000654 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---------CTCRVWGSDGKQLKMIKEHIGRGIW 352 (1371)
Q Consensus 284 dl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~D---------g~I~VWd~~g~~l~~l~~h~~~~V~ 352 (1371)
|+.++.. +.+ +..+.. ...|+ ++.|+..... ..|.+.|+.+.....+..... ..
T Consensus 307 dl~~g~~------~rl---t~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~--~~ 371 (419)
T PRK04043 307 KLNSGSV------EQV---VFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV--NQ 371 (419)
T ss_pred ECCCCCe------EeC---ccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC--cC
Confidence 7766543 111 111221 23666 5666554432 357777884444444543322 33
Q ss_pred EEEEcCCCCEEEEEECC-Cc--EEEEEcCCC
Q 000654 353 RCLYDSLSSLLVTAGFD-SA--IKVHQFQAF 380 (1371)
Q Consensus 353 sl~~spdg~~L~Tgg~D-g~--I~lwdl~~~ 380 (1371)
...|+|||+.|+-...+ +. +.+.++++.
T Consensus 372 ~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 68899999977665543 33 455566553
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.019 Score=70.79 Aligned_cols=186 Identities=10% Similarity=0.088 Sum_probs=111.2
Q ss_pred CccEEEEEEcCCEEEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC-CCCccccc
Q 000654 308 NARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLE 386 (1371)
Q Consensus 308 ~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~-~~~~~~l~ 386 (1371)
...++++++++.+|+-|..+|.+++.+..|.+ .+...|... ..+|.+++||+.||+|.|-.+- .+...
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~--- 107 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEIT--- 107 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccce---
Confidence 35678888999999999999999999998887 555556551 6689999999999999998872 11111
Q ss_pred CCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecC------CcEEEEEcCCcEEEEEeecCC-CceeEEeE
Q 000654 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE------DTLYIATNHGYLYHTKLCDMD-SVNWNKIL 459 (1371)
Q Consensus 387 ~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d------~~llv~t~~G~i~~~~l~~~~-~~~w~~i~ 459 (1371)
.++. ..++.+++++|+ +++++++..| +++ ++.+ -+.|..+.
T Consensus 108 -------------~~df---------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL---~er~wlgnk~~v~ 155 (846)
T KOG2066|consen 108 -------------QYDF---------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVL---SERNWLGNKDSVV 155 (846)
T ss_pred -------------eEec---------------CCcceeEEeccchhhhhhhheeecCcce-EEE---ehhhhhcCcccee
Confidence 1111 135788888887 3566666666 543 2211 01122332
Q ss_pred eecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCccc-ceeEEEEeecCCCcEE
Q 000654 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIER-QLLGTYWCKSLGHRFI 538 (1371)
Q Consensus 460 ~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~-~il~~~~~~s~d~~~L 538 (1371)
--...++|.++.. .++++|-++. -.|++||+.+.+....+.. +....+ ...-..++|.++ ..|
T Consensus 156 l~~~eG~I~~i~W----------~g~lIAWand-~Gv~vyd~~~~~~l~~i~~----p~~~~R~e~fpphl~W~~~-~~L 219 (846)
T KOG2066|consen 156 LSEGEGPIHSIKW----------RGNLIAWAND-DGVKVYDTPTRQRLTNIPP----PSQSVRPELFPPHLHWQDE-DRL 219 (846)
T ss_pred eecCccceEEEEe----------cCcEEEEecC-CCcEEEeccccceeeccCC----CCCCCCcccCCCceEecCC-CeE
Confidence 2233456666543 2456666654 4699999987654432211 111000 111112344444 345
Q ss_pred EEEcCCCcEEEEeCC
Q 000654 539 FTADPKGRLKLWQLC 553 (1371)
Q Consensus 539 ~s~s~dg~I~lWdi~ 553 (1371)
+.| ..-+|++..+.
T Consensus 220 VIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 220 VIG-WGDSVKICSIK 233 (846)
T ss_pred EEe-cCCeEEEEEEe
Confidence 444 55578888877
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.96 E-value=0.61 Score=56.64 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=62.7
Q ss_pred ecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcccccccccccccccccccccccccCCcCeEEEEEeecCCCceEE
Q 000654 576 SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEI 655 (1371)
Q Consensus 576 ~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L 655 (1371)
..+....|.|++++|+.+.|+.|+.||+|.+||...+.. ...+. .-..+.++|. +++..+
T Consensus 255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t------~~~ka-----------~~~P~~iaWH---p~gai~ 314 (545)
T PF11768_consen 255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT------LLAKA-----------EFIPTLIAWH---PDGAIF 314 (545)
T ss_pred EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee------eeeee-----------cccceEEEEc---CCCcEE
Confidence 346788899999999999999999999999999876421 00011 0237788898 678899
Q ss_pred EEEcCCCcEEEEEEecCCcc
Q 000654 656 RSTGGDGCICYLEYDKDRES 675 (1371)
Q Consensus 656 ~T~g~DG~v~iw~l~~~~~~ 675 (1371)
+++++-|.+.+||+.-+...
T Consensus 315 ~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 315 VVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EEEcCCceEEEEEeecCccc
Confidence 99999999999998876443
No 324
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.94 E-value=0.12 Score=63.14 Aligned_cols=140 Identities=10% Similarity=0.054 Sum_probs=81.4
Q ss_pred CcEEEEEEEecCCCCCCCC-EEEE-Ee---CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEE
Q 000654 18 GEISALCFVHLPSHLSSLP-FLLA-GS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1371)
Q Consensus 18 ~~Vtavafs~~pd~~~~~~-llaa-G~---dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la 92 (1371)
+....-.|+ || ++ +++. .. .+.|.++|+.+++...-.. ..+ ......|+ |||+ .++.
T Consensus 188 ~~~~~p~wS--pD----G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g-~~~~~~~S-------PDG~---~la~ 249 (419)
T PRK04043 188 GLNIFPKWA--NK----EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG-MLVVSDVS-------KDGS---KLLL 249 (419)
T ss_pred CCeEeEEEC--CC----CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC-cEEeeEEC-------CCCC---EEEE
Confidence 356778999 98 55 3443 33 2789999999887533322 333 45667799 9984 3433
Q ss_pred EEC---CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC-CC--cEEEEECCC
Q 000654 93 LFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DN--SIRVWDISN 166 (1371)
Q Consensus 93 ~~g---d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~-Dg--~I~vWd~~~ 166 (1371)
+.. +..|.++++..+. .+.+. .+........|+| ||+.|+-.+. .+ .|.++|+.+
T Consensus 250 ~~~~~g~~~Iy~~dl~~g~-------------~~~LT---~~~~~d~~p~~SP---DG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 250 TMAPKGQPDIYLYDTNTKT-------------LTQIT---NYPGIDVNGNFVE---DDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EEccCCCcEEEEEECCCCc-------------EEEcc---cCCCccCccEECC---CCCEEEEEECCCCCceEEEEECCC
Confidence 332 3567777765422 22222 2222233457999 9987766653 22 577888887
Q ss_pred CeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeC
Q 000654 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1371)
Q Consensus 167 ~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~ 201 (1371)
++.......... ...+ +|++..|+....
T Consensus 311 g~~~rlt~~g~~----~~~~---SPDG~~Ia~~~~ 338 (419)
T PRK04043 311 GSVEQVVFHGKN----NSSV---STYKNYIVYSSR 338 (419)
T ss_pred CCeEeCccCCCc----CceE---CCCCCEEEEEEc
Confidence 765332222111 1223 789988776553
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.89 E-value=0.56 Score=60.97 Aligned_cols=250 Identities=15% Similarity=0.128 Sum_probs=135.9
Q ss_pred eEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCE
Q 000654 180 LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI 259 (1371)
Q Consensus 180 ~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I 259 (1371)
-+.++.|. .+...++.+...|.|.+-|..+ ..+....--...|
T Consensus 70 ~i~s~~fl---~d~~~i~v~~~~G~iilvd~et----------------------------------~~~eivg~vd~GI 112 (1265)
T KOG1920|consen 70 EIVSVQFL---ADTNSICVITALGDIILVDPET----------------------------------LELEIVGNVDNGI 112 (1265)
T ss_pred ceEEEEEe---cccceEEEEecCCcEEEEcccc----------------------------------cceeeeeeccCce
Confidence 34555553 3566777788889999888761 1122222345789
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEc----cCCcccCCCC---ceee--ec----eEeecC-------------------
Q 000654 260 FRIEWSSCGSKLVSVSDDRSARIWEV----RAEYWKDSDS---IEEV--GS----SVLYGH------------------- 307 (1371)
Q Consensus 260 ~~v~~spdg~~LaS~s~Dg~VriWdl----~~~~~~~~~~---~~~~--~~----~~~~gh------------------- 307 (1371)
.+++|+||++.++-.+.++++.+-.- -..+....+. .+.+ +. ..+.|.
T Consensus 113 ~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~ 192 (1265)
T KOG1920|consen 113 SAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI 192 (1265)
T ss_pred EEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccch
Confidence 99999999999998888888766332 2211110000 0000 00 011111
Q ss_pred --CccEEEEEEc--CCEEEEEe----CC-CeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEEC---CCcEEEE
Q 000654 308 --NARVWDCCLT--DSFIITAG----ED-CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF---DSAIKVH 375 (1371)
Q Consensus 308 --~~~I~~l~~s--~~~L~Sgs----~D-g~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~---Dg~I~lw 375 (1371)
...=..+.|. ++++++.. .+ .+|+|||.+|..-.+-..-.+ -=.+++|-|.|.++++-.. |+.|.++
T Consensus 193 ~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~-l~~~LsWkPsgs~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 193 EQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEG-LQHSLSWKPSGSLIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred hhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccc-cccceeecCCCCeEeeeeecCCCCcEEEE
Confidence 1112347786 56777632 23 789999987543222111112 2357889999999988654 6679999
Q ss_pred EcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEE-EcCCcEEEEEeecCCCce
Q 000654 376 QFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVN 454 (1371)
Q Consensus 376 dl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~-t~~G~i~~~~l~~~~~~~ 454 (1371)
.-+|-.... |.+..|. ....+..++|+.++.+|+. ++...-..+.+|..++..
T Consensus 272 ErNGL~hg~----------------f~l~~p~----------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 272 ERNGLRHGE----------------FVLPFPL----------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ecCCccccc----------------cccCCcc----------cccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 887632211 1111111 1123889999999887776 222222224567777777
Q ss_pred eEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEE
Q 000654 455 WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (1371)
Q Consensus 455 w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi 501 (1371)
|..-....-+.... +++. +.....+.+...+|...++++
T Consensus 326 WYLKq~l~~~~~~~---~~W~-----p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 326 WYLKQELQFSQKAL---LMWD-----PVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred EEEEEEEecccccc---cccc-----CCCceeEEEEecCCcEEEEEE
Confidence 74322222111111 2222 233344444447777777665
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.006 Score=70.09 Aligned_cols=209 Identities=11% Similarity=0.041 Sum_probs=131.9
Q ss_pred CCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCC--CeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeC-CCeEE
Q 000654 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN--SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEII 206 (1371)
Q Consensus 130 gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~--~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~-dg~I~ 206 (1371)
-|.+.|+.+... -.+++.+++.||.++.|.-.. +.........+...+.++.. +.++.++.+.+. |..++
T Consensus 7 mhrd~i~hv~~t----ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~---S~dg~L~~Sv~d~Dhs~K 79 (558)
T KOG0882|consen 7 MHRDVITHVFPT----KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV---SYDGWLFRSVEDPDHSVK 79 (558)
T ss_pred cccceeeeEeee----hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc---cccceeEeeccCccccee
Confidence 477888887765 357889999999999997643 32222222222334445444 668888999766 99999
Q ss_pred EEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcC-CC--CEEEEEeCCCcEEEE
Q 000654 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CG--SKLVSVSDDRSARIW 283 (1371)
Q Consensus 207 vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~sp-dg--~~LaS~s~Dg~VriW 283 (1371)
++|+..-.... .++ +.--.+.+..+ .++ |. ..-++.-+++.+.++
T Consensus 80 vfDvEn~Dmin------------------miK-------------L~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~Vv 127 (558)
T KOG0882|consen 80 VFDVENFDMIN------------------MIK-------------LVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVV 127 (558)
T ss_pred EEEeeccchhh------------------hcc-------------cccCCCceEEe-cCCCCeeeeEEeecccCCCcEEE
Confidence 99998211100 001 11111111111 111 11 122334467889999
Q ss_pred EccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeCCC---c----EEEEE---------ee
Q 000654 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG---K----QLKMI---------KE 345 (1371)
Q Consensus 284 dl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~g---~----~l~~l---------~~ 345 (1371)
|-....++ .. ....-|..+|..+.+. +..+++....|.|.-|..++ . ....+ ..
T Consensus 128 D~~~d~~q----~~----~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K 199 (558)
T KOG0882|consen 128 DGFGDFCQ----DG----YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK 199 (558)
T ss_pred CCcCCcCc----cc----eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc
Confidence 97765431 11 2445689999999997 57888999999999999864 1 11111 11
Q ss_pred ccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC-CCccccc
Q 000654 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE 386 (1371)
Q Consensus 346 h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~-~~~~~l~ 386 (1371)
.+. ...++.|+|++..+.+-+.|..|+++.+.+ +..+.++
T Consensus 200 ~Kt-~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 200 AKT-EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccc-CccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 233 468999999999999999999999999954 4544444
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.88 E-value=0.95 Score=49.32 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=46.1
Q ss_pred CCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcc
Q 000654 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 146 dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~ 211 (1371)
-|++++.|...+.+.+.+..+|.....+...+.-.+.. .. .+++.++..|+.|+..+.-|++
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a-~~---d~~~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA-QC---DFDGGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce-EE---cCCCceEEEecCCCcEEEeccc
Confidence 35679999999999999999997766554322211111 11 5678999999999999999988
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.75 E-value=0.23 Score=64.42 Aligned_cols=217 Identities=13% Similarity=0.138 Sum_probs=120.7
Q ss_pred CcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCC
Q 000654 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1371)
Q Consensus 18 ~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~ 97 (1371)
+.|.++.|. -+ ...++++-.+|.|.+-|.++... ++-+.-+..|.+++|| ||.. .+..+.+.+
T Consensus 69 ~~i~s~~fl--~d---~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS-------~Dee---~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFL--AD---TNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWS-------PDEE---LLALITGRQ 131 (1265)
T ss_pred cceEEEEEe--cc---cceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeec-------CCCc---EEEEEeCCc
Confidence 568899998 54 12455555578888889887654 2223334479999999 8873 555556667
Q ss_pred eEEEEEeccCCCCCCCC-------CCccce-eeeeeeeccC---------------------CCCcEEEEEEEeecCCCc
Q 000654 98 RVKLFELNFELSPNSQY-------QPETCV-NLSLVQSLPR---------------------LSHWVFDVCFLKVCNGNR 148 (1371)
Q Consensus 98 sV~vwdl~~~~~~~~~~-------~~~~~v-~~~~~~~l~g---------------------h~~~I~~v~fsp~~~dg~ 148 (1371)
++.+-.-...-+...+. +....+ -++....++| -.+.=..|.|-- ||+
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg---Dg~ 208 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG---DGE 208 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc---CCc
Confidence 77664432110000000 000000 0010111111 111223578877 999
Q ss_pred EEEEEE----CC-CcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEE---eCCCeEEEEEcccCCccccCC
Q 000654 149 SLAIGC----SD-NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG---TIYNEIIVWKVDWEHVAPLLN 220 (1371)
Q Consensus 149 ~Latgs----~D-g~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasg---s~dg~I~vWd~~~~~~~~~~~ 220 (1371)
++|+.. .+ +.|++||.+ |.. .....+....-.++.+ -|.|.++++- +.++.|.++..+.-+
T Consensus 209 ~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsW---kPsgs~iA~iq~~~sd~~IvffErNGL~------ 277 (1265)
T KOG1920|consen 209 YFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSW---KPSGSLIAAIQCKTSDSDIVFFERNGLR------ 277 (1265)
T ss_pred EEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceee---cCCCCeEeeeeecCCCCcEEEEecCCcc------
Confidence 988732 23 789999987 432 2222222222233444 4677788773 345678888765110
Q ss_pred CCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEE---EeCCCcEEEEEccCCc
Q 000654 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS---VSDDRSARIWEVRAEY 289 (1371)
Q Consensus 221 ~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS---~s~Dg~VriWdl~~~~ 289 (1371)
.+.....+......|..++|+.++..||. ......|++|-+.+..
T Consensus 278 ------------------------hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 ------------------------HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ------------------------ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 11111222223344899999999999887 5555569999988754
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.66 E-value=0.3 Score=60.57 Aligned_cols=271 Identities=10% Similarity=-0.013 Sum_probs=137.9
Q ss_pred CCEEEEEe--CCcEEEEECCCCeEEEEEEeecCccEEEEEeecc------------ccccCCCCcceeeEEEEEC--CCe
Q 000654 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFI------------NCTEGSVSTRVTFEVALFG--EKR 98 (1371)
Q Consensus 35 ~~llaaG~--dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~------------~~~~~pdg~~~~~~la~~g--d~s 98 (1371)
|+||+.-. ++.|..-++..-+.-..+.......+|+++|-.. ..+..||| ..+...+ .+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDG----k~l~~~~ey~~~ 216 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDG----KDLDDPKKYRSL 216 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCC----CEeecccceeEE
Confidence 78888876 4677777776654433333334446777777521 01112354 2222222 355
Q ss_pred EEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCc
Q 000654 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (1371)
Q Consensus 99 V~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~ 178 (1371)
+.+.|.++ .+...++.- .+...-++++| +|.++++.+.+ .+.+..+..+.....
T Consensus 217 vSvID~et---------------meV~~qV~V-dgnpd~v~~sp---dGk~afvTsyN-------sE~G~tl~em~a~e~ 270 (635)
T PRK02888 217 FTAVDAET---------------MEVAWQVMV-DGNLDNVDTDY---DGKYAFSTCYN-------SEEGVTLAEMMAAER 270 (635)
T ss_pred EEEEECcc---------------ceEEEEEEe-CCCcccceECC---CCCEEEEeccC-------cccCcceeeeccccC
Confidence 66666553 122222111 12345677788 88888776532 222333333322222
Q ss_pred ceEEEEEe---eccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecc
Q 000654 179 CLLYSMKL---WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1371)
Q Consensus 179 ~~v~s~~~---~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1371)
..+..+.+ ....++|.+...+ ++.|.+.|..+.. .....+.....-
T Consensus 271 d~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~~t~~-----------------------------~~~~~v~~yIPV 319 (635)
T PRK02888 271 DWVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDGRKAA-----------------------------NAGSALTRYVPV 319 (635)
T ss_pred ceEEEEchHHHHHhhhCCCEEEEC--CCEEEEEECCccc-----------------------------cCCcceEEEEEC
Confidence 21111110 0113456555542 5789999987100 001122222234
Q ss_pred cCCEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCcccCCCCceeeec-eEeecCCccEEEEEEc--CCEEEEEeCCCeEE
Q 000654 256 EGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1371)
Q Consensus 256 ~~~I~~v~~spdg~~LaS~s-~Dg~VriWdl~~~~~~~~~~~~~~~~-~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~ 331 (1371)
......+.++|||++++.++ .+.+|.+.|+...+......++.-.. ..-..-.......+|+ +....|-.-|..|.
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~ 399 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIV 399 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeE
Confidence 56678999999999876655 58899999998754210000000000 0000112234456777 45666778899999
Q ss_pred EEeCCC-----------cEEEEEeeccCcCEEEEE------EcCCCCEEEEEEC
Q 000654 332 VWGSDG-----------KQLKMIKEHIGRGIWRCL------YDSLSSLLVTAGF 368 (1371)
Q Consensus 332 VWd~~g-----------~~l~~l~~h~~~~V~sl~------~spdg~~L~Tgg~ 368 (1371)
.|++.. ..+..+..|.. +-.+. -.|||+||++...
T Consensus 400 kwn~~~a~~~~~g~~~~~v~~k~dV~y~--pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 400 KWNIEAAIRAYKGEKVDPIVQKLDVHYQ--PGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EEehHHHHHHhccccCCcceecccCCCc--cceeeecCCCcCCCCCCEEEEccc
Confidence 999832 34444555543 11222 2678888887653
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.26 Score=61.64 Aligned_cols=195 Identities=10% Similarity=0.073 Sum_probs=116.9
Q ss_pred CCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCC-----eEEEEEcccCCccccCC
Q 000654 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-----EIIVWKVDWEHVAPLLN 220 (1371)
Q Consensus 146 dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg-----~I~vWd~~~~~~~~~~~ 220 (1371)
.+..+|.|+.+|.|.+.+-. -+.+..++.....++..+.. ..+..+|++-+.|. .|+||+++.-+ ..
T Consensus 34 ~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~---~~~~~~L~sv~Ed~~~np~llkiw~lek~~----~n 105 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYI---LNKQNFLFSVGEDEQGNPVLLKIWDLEKVD----KN 105 (933)
T ss_pred CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhc---ccCceEEEEEeecCCCCceEEEEecccccC----CC
Confidence 77889999999998887642 23335555444332222211 23345777755553 58999998110 00
Q ss_pred CCCCCCCCCCCCCcceeeecccccceeeE--EEEec-----ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCC
Q 000654 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNL--FRLVG-----HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1371)
Q Consensus 221 ~~~~~s~~~~~~~~~~i~i~~~~~~~~~~--~~l~g-----H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~ 293 (1371)
.....+ +++.. ...++..++.+.+-+.+|.|-.+|.|..+.-.--+...
T Consensus 106 -----------------------~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg- 161 (933)
T KOG2114|consen 106 -----------------------NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG- 161 (933)
T ss_pred -----------------------CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc-
Confidence 001122 23333 24568889999998899999999999888533211100
Q ss_pred CCceeeeceEeecCCccEEEEEEc--CCEEEEEeCCCeEEEEeCCCcE--EEEEeeccCcCEEEEEEcCCCCEEEEEECC
Q 000654 294 DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQ--LKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1371)
Q Consensus 294 ~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~g~~--l~~l~~h~~~~V~sl~~spdg~~L~Tgg~D 369 (1371)
.+ . .....-..+|+.+++. +..++-+..-..|.+|.++|+. +..+..|.. ++.|..+++....+++++ +
T Consensus 162 --sr-~--~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~-~lnCss~~~~t~qfIca~-~ 234 (933)
T KOG2114|consen 162 --SR-Q--DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGI-SLNCSSFSDGTYQFICAG-S 234 (933)
T ss_pred --cc-e--eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCc-cceeeecCCCCccEEEec-C
Confidence 11 0 1222335689999997 3432333334578999996655 444666666 699999987666466554 3
Q ss_pred CcEEEEEcCC
Q 000654 370 SAIKVHQFQA 379 (1371)
Q Consensus 370 g~I~lwdl~~ 379 (1371)
..+.+|+.++
T Consensus 235 e~l~fY~sd~ 244 (933)
T KOG2114|consen 235 EFLYFYDSDG 244 (933)
T ss_pred ceEEEEcCCC
Confidence 4788888753
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.64 E-value=0.45 Score=58.03 Aligned_cols=225 Identities=14% Similarity=0.161 Sum_probs=116.9
Q ss_pred cEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCC
Q 000654 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1371)
Q Consensus 67 ~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~d 146 (1371)
....+.++ |.| +.++++++|.-.|+.... .+... .+.-...+|.+ .
T Consensus 34 ~p~~ls~n-------png----r~v~V~g~geY~iyt~~~---------------~r~k~-----~G~g~~~vw~~---~ 79 (443)
T PF04053_consen 34 YPQSLSHN-------PNG----RFVLVCGDGEYEIYTALA---------------WRNKA-----FGSGLSFVWSS---R 79 (443)
T ss_dssp --SEEEE--------TTS----SEEEEEETTEEEEEETTT---------------TEEEE-----EEE-SEEEE-T---S
T ss_pred CCeeEEEC-------CCC----CEEEEEcCCEEEEEEccC---------------Ccccc-----cCceeEEEEec---C
Confidence 45677777 998 788899999999998432 11111 12344677776 5
Q ss_pred CcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCC
Q 000654 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1371)
Q Consensus 147 g~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s 226 (1371)
+. +|+-...++|.++.--+......+..+.. +-.+ ++ |.+|...+ ++.|.+||+.
T Consensus 80 n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~~--~~~I--f~----G~LL~~~~-~~~i~~yDw~--------------- 134 (443)
T PF04053_consen 80 NR-YAVLESSSTIKIYKNFKNEVVKSIKLPFS--VEKI--FG----GNLLGVKS-SDFICFYDWE--------------- 134 (443)
T ss_dssp SE-EEEE-TTS-EEEEETTEE-TT-----SS---EEEE--E-----SSSEEEEE-TTEEEEE-TT---------------
T ss_pred cc-EEEEECCCeEEEEEcCccccceEEcCCcc--cceE--Ec----CcEEEEEC-CCCEEEEEhh---------------
Confidence 55 66666688899974322222223333221 1111 11 55565555 4489999998
Q ss_pred CCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCccc--CCCCce-eeeceE
Q 000654 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK--DSDSIE-EVGSSV 303 (1371)
Q Consensus 227 ~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~--~~~~~~-~~~~~~ 303 (1371)
+.+.+.++... +|..|.|++++.+++-.+.+ ++.|++....... ...-.+ .+. .
T Consensus 135 ------------------~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~--~ 191 (443)
T PF04053_consen 135 ------------------TGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFE--L 191 (443)
T ss_dssp ------------------T--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE--E
T ss_pred ------------------HcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceE--E
Confidence 66677777533 48999999999999998876 7888776543000 000000 111 2
Q ss_pred eecCCccEEEEEEcCCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 304 LYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 304 ~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
...-..+|.+.+|.++.++-.... .++- + .|+ ...+..-.. ++.=+.+.++.+.+.....|+.+..+.+.
T Consensus 192 ~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~-~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 192 IHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGE-TGIIAHLDK-PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTE-EEEEEE-SS---EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCC-cceEEEcCC-ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 222257788889987655555544 6665 4 333 333332223 67778888877888888999999998874
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.086 Score=60.31 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=64.6
Q ss_pred eeeEEEEecccCCEEEEEEcCCCC-EEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEE
Q 000654 246 AVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFI 321 (1371)
Q Consensus 246 ~~~~~~l~gH~~~I~~v~~spdg~-~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L 321 (1371)
.+...-+.+|...|..++|+|..+ ++..++.+..|+|.|+.+... +. ....| ..+|+++|. .++|
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----vs-----sy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----VS-----SYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-----ee-----heecc-CCceeeeeccCCccee
Confidence 334456678889999999999776 788899999999999998654 21 34444 889999998 4789
Q ss_pred EEEeCCCeEEEEeC
Q 000654 322 ITAGEDCTCRVWGS 335 (1371)
Q Consensus 322 ~Sgs~Dg~I~VWd~ 335 (1371)
+.|-..|.|.|||+
T Consensus 252 YaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDM 265 (463)
T ss_pred EEeccCceEEEEEc
Confidence 99999999999999
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.56 E-value=0.46 Score=57.15 Aligned_cols=131 Identities=14% Similarity=0.091 Sum_probs=77.4
Q ss_pred cEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCC-CCCC---------------Cc------------c
Q 000654 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN-SQYQ---------------PE------------T 118 (1371)
Q Consensus 67 ~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~-~~~~---------------~~------------~ 118 (1371)
.|..+.|. ++.. .+.++...|.|.||.+......+ .... +. .
T Consensus 3 ~v~~vs~a-------~~t~---Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFA-------PETL---ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEE-------TTTT---EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEec-------CCCc---eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCccc
Confidence 57788888 5542 66777778999999887532111 0000 10 0
Q ss_pred ceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecC-------CcceEEEEEee--cc
Q 000654 119 CVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP-------ERCLLYSMKLW--GD 189 (1371)
Q Consensus 119 ~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~-------~~~~v~s~~~~--~~ 189 (1371)
..-+.+...+....++|.+++.+ +=.++|.|..+|.+.|.|++....+..-... ..+.+.++.|. ..
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S----~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNS----DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE-----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred ccccCchhheeccCCcEeEEecC----CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec
Confidence 11244555566668999999997 4568999999999999999888887663321 22223333321 11
Q ss_pred CCCC---cEEEEEeCCCeEEEEEcc
Q 000654 190 NLEA---LRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 190 s~d~---~~Lasgs~dg~I~vWd~~ 211 (1371)
..|+ ..++.|+..|.+.+|++.
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred CCCcccceEEEEEeCCCCEEEEEEe
Confidence 2233 678999999999999886
No 334
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.56 E-value=1.4 Score=53.71 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=39.5
Q ss_pred cEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEec
Q 000654 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN 105 (1371)
Q Consensus 45 ~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~ 105 (1371)
.|+||+. +|+++.++.--. .+|.++.|+ .+- .++++..+|.+++||+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt-------~~e----~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWT-------DDE----ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEEC-------CCC----eEEEEEcCCEEEEEeCC
Confidence 5999995 678888877544 589999998 543 79999999999999985
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.37 E-value=2.3 Score=53.12 Aligned_cols=94 Identities=7% Similarity=-0.016 Sum_probs=53.4
Q ss_pred EEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEE------------------eCCCeEE
Q 000654 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA------------------GEDCTCR 331 (1371)
Q Consensus 270 ~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sg------------------s~Dg~I~ 331 (1371)
.++.++.+|.+...|..+++.. .+ . ... ...++.++..++.+ ..+|.+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~----W~-~---~~~-----~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLI----SA-R---PEV-----EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred EEEEECCCceEEEEECCCCcEe----eE-e---Eee-----ccccccCCceEEEccccccccCcccccCCCCCCCceEEE
Confidence 5677788899999999887651 00 0 000 01122223333332 2356777
Q ss_pred EEeC-CCcEEEEEeeccC-------cCEE--EEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 332 VWGS-DGKQLKMIKEHIG-------RGIW--RCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 332 VWd~-~g~~l~~l~~h~~-------~~V~--sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
-.|. +|+.+-....... .+.. .++. .+..|+.++.||.+..+|.+
T Consensus 370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred EEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECC
Confidence 7787 7777665543210 0111 1222 45678888899999999983
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.13 E-value=3.2 Score=46.60 Aligned_cols=213 Identities=8% Similarity=0.040 Sum_probs=115.2
Q ss_pred eeeccCCCCcEEEEEEEeecCCCc-EEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCC
Q 000654 125 VQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1371)
Q Consensus 125 ~~~l~gh~~~I~~v~fsp~~~dg~-~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg 203 (1371)
...+.+-.+.+..++|.| +.+ ++++....+.|.-.+. +|+.+.++.-..-.-.-.+.+ ..++.++++--.++
T Consensus 14 ~~~l~g~~~e~SGLTy~p---d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y---~g~~~~vl~~Er~~ 86 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNP---DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITY---LGNGRYVLSEERDQ 86 (248)
T ss_dssp EEE-TT--S-EEEEEEET---TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE----STTEEEEEETTTT
T ss_pred eeECCCccCCccccEEcC---CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEE---ECCCEEEEEEcCCC
Confidence 345667777899999999 654 5566667777877786 578888876544334455665 34566666666689
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEE-----ecccCCEEEEEEcCCCCEEEEEeCCC
Q 000654 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-----VGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1371)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l-----~gH~~~I~~v~~spdg~~LaS~s~Dg 278 (1371)
.+.++++...... + .......+ ..+...+-.|+|.|.++.|+.+-+..
T Consensus 87 ~L~~~~~~~~~~~--------------------~-------~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~ 139 (248)
T PF06977_consen 87 RLYIFTIDDDTTS--------------------L-------DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK 139 (248)
T ss_dssp EEEEEEE----TT-----------------------------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS
T ss_pred cEEEEEEeccccc--------------------c-------chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC
Confidence 9999988511000 0 01111111 13455689999999888877777777
Q ss_pred cEEEEEccCCcccCCCCceeeec---eEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeCCCcEEEEEeeccC----
Q 000654 279 SARIWEVRAEYWKDSDSIEEVGS---SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG---- 348 (1371)
Q Consensus 279 ~VriWdl~~~~~~~~~~~~~~~~---~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~---- 348 (1371)
-.+|+.+...... ........ .........+.+++++ +.+++...++..+.++|.+|+++..+.-..+
T Consensus 140 P~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 140 PKRLYEVNGFPGG--FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp SEEEEEEESTT-S--S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-
T ss_pred ChhhEEEccccCc--cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCc
Confidence 7778877651100 00111000 0011234457888888 4688888899999999999998877654331
Q ss_pred ----cCEEEEEEcCCCCEEEEEECCCcEEE
Q 000654 349 ----RGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1371)
Q Consensus 349 ----~~V~sl~~spdg~~L~Tgg~Dg~I~l 374 (1371)
..--.|+|.++|++.++ +.-+...+
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIV-SEPNLFYR 246 (248)
T ss_dssp SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred ccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence 13678999999865444 45444443
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.11 E-value=2.5 Score=48.99 Aligned_cols=268 Identities=15% Similarity=0.092 Sum_probs=141.5
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE--------CC--CeEEEEEeccCCCCCCC
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF--------GE--KRVKLFELNFELSPNSQ 113 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~--------gd--~sV~vwdl~~~~~~~~~ 113 (1371)
+.+.|+|..+++.+..+...- .-.+.++ ||++ .+.++. |+ -.|.+||..+-.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~s-------pdgk---~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~----- 78 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALS-------PDGK---TIYVAETFYSRGTRGERTDVVEIWDTQTLS----- 78 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE--------TTSS---EEEEEEEEEEETTEEEEEEEEEEEETTTTE-----
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeEC-------CCCC---EEEEEEEEEeccccccceeEEEEEecCcCc-----
Confidence 579999999999988887532 3346677 8884 333221 11 348999988622
Q ss_pred CCCccceeeeeeeeccC-CC----CcEEEEEEEeecCCCcEEEEE--ECCCcEEEEECCCCeEEEEEecCCcceEEEEEe
Q 000654 114 YQPETCVNLSLVQSLPR-LS----HWVFDVCFLKVCNGNRSLAIG--CSDNSIRVWDISNSSIILEVHSPERCLLYSMKL 186 (1371)
Q Consensus 114 ~~~~~~v~~~~~~~l~g-h~----~~I~~v~fsp~~~dg~~Latg--s~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~ 186 (1371)
.+..-.++. |. -.....+++. ++++++.. +--.+|.|-|+..++.+.++..+....+|-.
T Consensus 79 --------~~~EI~iP~k~R~~~~~~~~~~~ls~---dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-- 145 (342)
T PF06433_consen 79 --------PTGEIEIPPKPRAQVVPYKNMFALSA---DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-- 145 (342)
T ss_dssp --------EEEEEEETTS-B--BS--GGGEEE-T---TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE--
T ss_pred --------ccceEecCCcchheecccccceEEcc---CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec--
Confidence 111111111 01 1223356666 88877664 3456799999999999999988775555542
Q ss_pred eccCCCCcEEEEEeCCCeEEEEEccc-CCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEE-EEEE
Q 000654 187 WGDNLEALRIASGTIYNEIIVWKVDW-EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF-RIEW 264 (1371)
Q Consensus 187 ~~~s~d~~~Lasgs~dg~I~vWd~~~-~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~-~v~~ 264 (1371)
. ..-+.+-+.||.+.-..+.. ++.. .+....|..-..+++ .=++
T Consensus 146 ---~--~~~F~~lC~DGsl~~v~Ld~~Gk~~-----------------------------~~~t~~F~~~~dp~f~~~~~ 191 (342)
T PF06433_consen 146 ---G--NRGFSMLCGDGSLLTVTLDADGKEA-----------------------------QKSTKVFDPDDDPLFEHPAY 191 (342)
T ss_dssp ---E--TTEEEEEETTSCEEEEEETSTSSEE-----------------------------EEEEEESSTTTS-B-S--EE
T ss_pred ---C--CCceEEEecCCceEEEEECCCCCEe-----------------------------EeeccccCCCCcccccccce
Confidence 1 23577888899999988871 1100 000001111112222 1223
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeec----CCc----cEEEEEEc--CCEEEEE---eCC----
Q 000654 265 SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG----HNA----RVWDCCLT--DSFIITA---GED---- 327 (1371)
Q Consensus 265 spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~g----h~~----~I~~l~~s--~~~L~Sg---s~D---- 327 (1371)
...+..++-.+.+|.|+--|+...... ...+..+.. -.+ .-.-++++ .+.|+.- +.+
T Consensus 192 ~~~~~~~~F~Sy~G~v~~~dlsg~~~~------~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 192 SRDGGRLYFVSYEGNVYSADLSGDSAK------FGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp ETTTTEEEEEBTTSEEEEEEETTSSEE------EEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred ECCCCeEEEEecCCEEEEEeccCCccc------ccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 334444444566666666665554321 111000000 000 00113443 2233222 222
Q ss_pred -Ce--EEEEeC-CCcEEEEEeeccCcCEEEEEEcCCCC-EEEEEE-CCCcEEEEEc-CCCCccc
Q 000654 328 -CT--CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQF-QAFLPGS 384 (1371)
Q Consensus 328 -g~--I~VWd~-~g~~l~~l~~h~~~~V~sl~~spdg~-~L~Tgg-~Dg~I~lwdl-~~~~~~~ 384 (1371)
+. |.++|+ +++.+..+.... ++.+|.++.+.+ +|++.. .++.+.+||. +++.+++
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred CCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 22 666677 788888877533 488999998776 666554 5899999999 4444333
No 338
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.13 Score=58.96 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=67.7
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeC
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~ 201 (1371)
++....+.+|...|.+++|+|. +..+|..++.++.|+|.|+++...+..+..+ ..++|.+|.- .+..++++|..
T Consensus 183 fkssq~lp~~g~~IrdlafSp~--~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDl--de~h~IYaGl~ 256 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPF--NEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDL--DERHVIYAGLQ 256 (463)
T ss_pred cchhhcccccchhhhhhccCcc--ccceeeeeccCceEEEEecccceeeeheecc--CCceeeeecc--CCcceeEEecc
Confidence 4445577788899999999992 3347888999999999999998888777655 4567766632 34789999999
Q ss_pred CCeEEEEEcc
Q 000654 202 YNEIIVWKVD 211 (1371)
Q Consensus 202 dg~I~vWd~~ 211 (1371)
.|.|.|||++
T Consensus 257 nG~VlvyD~R 266 (463)
T KOG1645|consen 257 NGMVLVYDMR 266 (463)
T ss_pred CceEEEEEcc
Confidence 9999999998
No 339
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.99 E-value=0.018 Score=42.41 Aligned_cols=38 Identities=34% Similarity=0.605 Sum_probs=33.8
Q ss_pred eeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000654 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1371)
Q Consensus 247 ~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWd 284 (1371)
.++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566778999999999999999999999999999996
No 340
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.96 E-value=4.3 Score=50.80 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=26.9
Q ss_pred EEEcCCEEEEEeCCCeEEEEeC-CCcEEEEEee
Q 000654 314 CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1371)
Q Consensus 314 l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~ 345 (1371)
+...+..|+.++.||.+..+|. +|+.+..++.
T Consensus 402 ~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 402 LATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred eEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 3445788999999999999999 8998888765
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.74 E-value=5.5 Score=46.22 Aligned_cols=269 Identities=13% Similarity=0.144 Sum_probs=131.2
Q ss_pred ccEEEEeCCCCcccCcE-----EEEEEEecCCCCCCCCEEEEEe-----------CCcEEEEECCCCeEEEEEEeecCcc
Q 000654 4 KDLSEWRLDVGQYLGEI-----SALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFHGIR 67 (1371)
Q Consensus 4 ~tV~iWdl~~~~h~~~V-----tavafs~~pd~~~~~~llaaG~-----------dg~I~Iwd~~sg~~l~~~~~~~~~~ 67 (1371)
+.+.|.|..+++.+|-| --+..+ |+ ++.+.+.+ .-.|.+||.++-+...++......+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~s--pd----gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALS--PD----GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE---TT----SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred ceEEEEECCCCcEEEEeecccCCceeEC--CC----CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 46889999999877766 346778 88 66666532 1469999999998888776543212
Q ss_pred EEE------EEeeccccccCCCCcceeeEEEEEC---CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEE
Q 000654 68 LHG------ISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1371)
Q Consensus 68 I~~------i~~s~~~~~~~pdg~~~~~~la~~g---d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v 138 (1371)
... ++++ .|| +.+.++- ..+|.|.|+.... +-..-...| |.
T Consensus 91 ~~~~~~~~~~~ls-------~dg----k~~~V~N~TPa~SVtVVDl~~~k-------------vv~ei~~PG------C~ 140 (342)
T PF06433_consen 91 AQVVPYKNMFALS-------ADG----KFLYVQNFTPATSVTVVDLAAKK-------------VVGEIDTPG------CW 140 (342)
T ss_dssp --BS--GGGEEE--------TTS----SEEEEEEESSSEEEEEEETTTTE-------------EEEEEEGTS------EE
T ss_pred heecccccceEEc-------cCC----cEEEEEccCCCCeEEEEECCCCc-------------eeeeecCCC------EE
Confidence 222 2222 444 2333322 3455555554321 111112222 22
Q ss_pred EEEeecCCCcEEEEEECCCcEEEEECC-CCeEEEE---EecCCcceEEE-EEeeccCCCCcEEEEEeCCCeEEEEEcccC
Q 000654 139 CFLKVCNGNRSLAIGCSDNSIRVWDIS-NSSIILE---VHSPERCLLYS-MKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1371)
Q Consensus 139 ~fsp~~~dg~~Latgs~Dg~I~vWd~~-~~~~~~~---l~~~~~~~v~s-~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~ 213 (1371)
-.-|. ....+.+-+.||++.-..+. .|+...+ +..+....++. -.+ ...+..++--+..|.|+--|+...
T Consensus 141 ~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~---~~~~~~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 141 LIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY---SRDGGRLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp EEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE---ETTTTEEEEEBTTSEEEEEEETTS
T ss_pred EEEec--CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce---ECCCCeEEEEecCCEEEEEeccCC
Confidence 22342 22447777889999988887 5555422 22222222221 111 123344544677888888887622
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccc---cceeeEEEEecccCCEEEEEEcCCCCEEEEEe--------CCC--cE
Q 000654 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ---HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS--------DDR--SA 280 (1371)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~---~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s--------~Dg--~V 280 (1371)
..... ..+.+.... .... .+.-.-+++++..+.|...- .|+ .|
T Consensus 216 ~~~~~----------------~~~~~~t~~e~~~~Wr--------PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteV 271 (342)
T PF06433_consen 216 SAKFG----------------KPWSLLTDAEKADGWR--------PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEV 271 (342)
T ss_dssp SEEEE----------------EEEESS-HHHHHTTEE--------E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEE
T ss_pred ccccc----------------CcccccCccccccCcC--------CcceeeeeeccccCeEEEEecCCCCCCccCCceEE
Confidence 11000 000000000 0000 01112244544433333211 122 36
Q ss_pred EEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEE-eCCCeEEEEeC-CCcEEEEEeeccC
Q 000654 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA-GEDCTCRVWGS-DGKQLKMIKEHIG 348 (1371)
Q Consensus 281 riWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sg-s~Dg~I~VWd~-~g~~l~~l~~h~~ 348 (1371)
.++|+.+++. +. .+. -..++.+++.+ ..+|++. ..++.+.|||. +|+.+..+..-..
T Consensus 272 Wv~D~~t~kr-----v~-----Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 272 WVYDLKTHKR-----VA-----RIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp EEEETTTTEE-----EE-----EEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred EEEECCCCeE-----EE-----EEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 6667776654 22 111 12357788887 2466554 56899999999 9999888875443
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.67 E-value=0.5 Score=60.83 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=81.6
Q ss_pred ceeeEEEEecccCC-EEEEEEcC-----CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-
Q 000654 245 TAVNLFRLVGHEGS-IFRIEWSS-----CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (1371)
Q Consensus 245 ~~~~~~~l~gH~~~-I~~v~~sp-----dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s- 317 (1371)
.++.+.....|... |..++-.. .......|-.+..+..||.+-.... .+. .. ...+.......|++-+
T Consensus 513 ~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k---~v~-~~-~k~Y~~~~~Fs~~aTt~ 587 (794)
T PF08553_consen 513 RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK---LVD-SQ-SKQYSSKNNFSCFATTE 587 (794)
T ss_pred CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc---eee-cc-ccccccCCCceEEEecC
Confidence 55666666665543 54443211 1234556777778999999864320 010 00 1223344567777776
Q ss_pred CCEEEEEeCCCeEEEEeCCCcEEEE-EeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 318 DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 318 ~~~L~Sgs~Dg~I~VWd~~g~~l~~-l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
..+||.|+.+|.||+||-.|+.-++ +.+-.. +|..|..+.||+||+..+ +..+.|++.
T Consensus 588 ~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 588 DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEEeCCCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 6899999999999999985544443 444444 899999999999988776 447777776
No 343
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.57 E-value=1.9 Score=51.89 Aligned_cols=176 Identities=11% Similarity=0.086 Sum_probs=95.2
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeec-------CccEEEEEeeccccccCCCCccee
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH-------GIRLHGISCNFINCTEGSVSTRVT 88 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~-------~~~I~~i~~s~~~~~~~pdg~~~~ 88 (1371)
.++|++++.| . -.++|+|+ +|.|.|.|+....++..-...+ ...|.++.|+..... .|+-...
T Consensus 86 ~g~vtal~~S--~-----iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~--~D~ySSi 156 (395)
T PF08596_consen 86 QGPVTALKNS--D-----IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG--GDGYSSI 156 (395)
T ss_dssp S-SEEEEEE---B-----TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T--TSSSEEE
T ss_pred CCcEeEEecC--C-----CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC--CCcccce
Confidence 5889999998 3 36999999 6999999998888887644222 246888888843221 2321112
Q ss_pred eEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCC-------------------cE
Q 000654 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-------------------RS 149 (1371)
Q Consensus 89 ~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg-------------------~~ 149 (1371)
.+++....|.+.+|++.... +.....+.......+.+.|..+..... .+| +-
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~--------~g~f~v~~~~~~~~~~~~i~~I~~i~~-~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSS--------NGRFSVQFAGATTNHDSPILSIIPINA-DTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-G--------GG-EEEEEEEEE--SS----EEEEEET-TT--B-B-BHHHHHGGGGT----E
T ss_pred EEEEEeCCCCEEEEEEecCC--------CCceEEEEeeccccCCCceEEEEEEEC-CCCCcccCchhHhhccccCCCcCc
Confidence 34444557999999986311 011122333333467788887774420 001 12
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeecc--CCCCcEEEEEeCCCeEEEEEcc
Q 000654 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGD--NLEALRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 150 Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~--s~d~~~Lasgs~dg~I~vWd~~ 211 (1371)
++....+..++++...+.+...+.. .....+..+.+... ...+..|++-..+|.|+++.+.
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred EEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 3334457789999998877765554 22222223333211 1246678888899999999987
No 344
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.51 E-value=0.035 Score=40.82 Aligned_cols=39 Identities=28% Similarity=0.410 Sum_probs=33.8
Q ss_pred CcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000654 337 GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1371)
Q Consensus 337 g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwd 376 (1371)
++++..+..|.. .|+++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTG-PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCC-ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667777887 699999999999999999999999995
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.40 E-value=0.86 Score=58.72 Aligned_cols=153 Identities=10% Similarity=0.075 Sum_probs=96.9
Q ss_pred CCEEEEEe--CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCC
Q 000654 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1371)
Q Consensus 35 ~~llaaG~--dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~ 112 (1371)
..+|+... ...|.-.|++.|+++.+...+...+|..++-....-.-.+. ..++..+++.+..||.+... .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e-----~tflGls~n~lfriDpR~~~---~ 564 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNE-----QTFLGLSDNSLFRIDPRLSG---N 564 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCC-----ceEEEECCCceEEeccCCCC---C
Confidence 45555543 37899999999999999998877567776543111111122 56778889999999998532 0
Q ss_pred CCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCC
Q 000654 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1371)
Q Consensus 113 ~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d 192 (1371)
..+ ....+.+ .......|++-+. ..+||+|+.+|.||+||-. |+.-++.-..-+..+..+.. +.|
T Consensus 565 -----k~v-~~~~k~Y-~~~~~Fs~~aTt~----~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDv---t~D 629 (794)
T PF08553_consen 565 -----KLV-DSQSKQY-SSKNNFSCFATTE----DGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDV---TAD 629 (794)
T ss_pred -----cee-ecccccc-ccCCCceEEEecC----CceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEe---cCC
Confidence 001 0111111 1233566666553 4579999999999999953 33333333333556667766 788
Q ss_pred CcEEEEEeCCCeEEEEEcc
Q 000654 193 ALRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 193 ~~~Lasgs~dg~I~vWd~~ 211 (1371)
|.+|++.+ +..|.+++..
T Consensus 630 GkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 630 GKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CcEEEEee-cceEEEEEEe
Confidence 99888766 6677777764
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.35 E-value=6.3 Score=44.28 Aligned_cols=165 Identities=10% Similarity=0.061 Sum_probs=89.2
Q ss_pred CcEEEEEEEecCCCCCCCCEEEEEeC--CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC
Q 000654 18 GEISALCFVHLPSHLSSLPFLLAGSG--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1371)
Q Consensus 18 ~~Vtavafs~~pd~~~~~~llaaG~d--g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g 95 (1371)
..+.+|+|. |+ ...|+|-.| +.|..++. +|++++++.........+|++. .++ .++++..
T Consensus 22 ~e~SGLTy~--pd----~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-------g~~----~~vl~~E 83 (248)
T PF06977_consen 22 DELSGLTYN--PD----TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-------GNG----RYVLSEE 83 (248)
T ss_dssp S-EEEEEEE--TT----TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--------STT----EEEEEET
T ss_pred CCccccEEc--CC----CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-------CCC----EEEEEEc
Confidence 459999999 97 455555553 88888886 5888888875333358899988 555 5555554
Q ss_pred -CCeEEEEEeccCCCCCCCCCCccceeeeee--eeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCC---CeE
Q 000654 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLV--QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN---SSI 169 (1371)
Q Consensus 96 -d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~--~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~---~~~ 169 (1371)
++.+.++++......- .....+.+ .....++..+-.++|.| .++.|+.+-...-..++.+.. ...
T Consensus 84 r~~~L~~~~~~~~~~~~------~~~~~~~~~l~~~~~~N~G~EGla~D~---~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSL------DRADVQKISLGFPNKGNKGFEGLAYDP---KTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TTTEEEEEEE----TT--------EEEEEEEE---S---SS--EEEEEET---TTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred CCCcEEEEEEecccccc------chhhceEEecccccCCCcceEEEEEcC---CCCEEEEEeCCCChhhEEEccccCccc
Confidence 7899999985422000 00001111 11123455689999999 777777777777777776653 212
Q ss_pred EEEEe-------cCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcc
Q 000654 170 ILEVH-------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 170 ~~~l~-------~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~ 211 (1371)
+.... .....-+.++.++ ...+.+++-...+..|...|..
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~--p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYD--PRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEE--TTTTEEEEEETTTTEEEEE-TT
T ss_pred eeeccccccccccceeccccceEEc--CCCCeEEEEECCCCeEEEECCC
Confidence 11111 0111123455554 3356677777788888888865
No 347
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.18 E-value=1.4 Score=42.50 Aligned_cols=106 Identities=13% Similarity=0.240 Sum_probs=66.5
Q ss_pred EEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCe
Q 000654 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1371)
Q Consensus 20 Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~s 98 (1371)
|++|++..... .+..-|++|+ |..||||+- .+++.++.. ..+|+.++-. ..+ .+..+..+|+
T Consensus 2 V~al~~~d~d~--dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e--~~~v~~L~~~-------~~~----~F~Y~l~NGT 64 (111)
T PF14783_consen 2 VTALCLFDFDG--DGENELLVGSDDFEIRVFKG--DEIVAEITE--TDKVTSLCSL-------GGG----RFAYALANGT 64 (111)
T ss_pred eeEEEEEecCC--CCcceEEEecCCcEEEEEeC--CcEEEEEec--ccceEEEEEc-------CCC----EEEEEecCCE
Confidence 78888873221 1224555555 799999984 367777774 3368888876 444 5666667899
Q ss_pred EEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCC-cEEEEEECCCcEE
Q 000654 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIR 160 (1371)
Q Consensus 99 V~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg-~~Latgs~Dg~I~ 160 (1371)
|-+|+-.... + ..+ -...+.++++...+.+| ..|++|-.+|.|-
T Consensus 65 VGvY~~~~Rl-------------W----RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 65 VGVYDRSQRL-------------W----RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEeCccee-------------e----eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9999754211 1 111 12347777776644344 3688888888764
No 348
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.10 E-value=13 Score=46.64 Aligned_cols=105 Identities=10% Similarity=0.004 Sum_probs=67.6
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEE-EEeCCCeEEEEeC-CCc-
Q 000654 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII-TAGEDCTCRVWGS-DGK- 338 (1371)
Q Consensus 264 ~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~-Sgs~Dg~I~VWd~-~g~- 338 (1371)
+.++|++... .+..|.+.|..+..... .. + .....-....+.+.++ +++++ ++..+.++.|.|+ ..+
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~---~~-v--~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAG---SA-L--TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCC---cc-e--EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 3457776554 35689999988711000 00 0 1334445677888888 46655 4556899999998 322
Q ss_pred -----------EEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 339 -----------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 339 -----------~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.+.....-. +-...+|.++|....|---|..|..|++.
T Consensus 356 ~~~~~~~~~~~vvaevevGl--GPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGL--GPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred hhhccCCccceEEEeeccCC--CcceEEECCCCCEEEeEeecceeEEEehH
Confidence 123333222 34577899999888888889999999984
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.68 E-value=4.2 Score=49.77 Aligned_cols=224 Identities=13% Similarity=0.078 Sum_probs=107.5
Q ss_pred EEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEE-CCCe
Q 000654 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKR 98 (1371)
Q Consensus 20 Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~-gd~s 98 (1371)
...+.++ |+ +++++++.+|.-.||.....+.... + .-...+|. +.+ . +|+. ..++
T Consensus 35 p~~ls~n--pn----gr~v~V~g~geY~iyt~~~~r~k~~-----G-~g~~~vw~-------~~n----~-yAv~~~~~~ 90 (443)
T PF04053_consen 35 PQSLSHN--PN----GRFVLVCGDGEYEIYTALAWRNKAF-----G-SGLSFVWS-------SRN----R-YAVLESSST 90 (443)
T ss_dssp -SEEEE---TT----SSEEEEEETTEEEEEETTTTEEEEE-----E-E-SEEEE--------TSS----E-EEEE-TTS-
T ss_pred CeeEEEC--CC----CCEEEEEcCCEEEEEEccCCccccc-----C-ceeEEEEe-------cCc----c-EEEEECCCe
Confidence 5788999 98 8999999999999999555443221 1 23456787 654 3 5554 4788
Q ss_pred EEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCc
Q 000654 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (1371)
Q Consensus 99 V~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~ 178 (1371)
|.|+.--... ....++.. ..+..+- .|.+|...+. +.|.+||..+++.+.++..+.
T Consensus 91 I~I~kn~~~~---------------~~k~i~~~-~~~~~If------~G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~- 146 (443)
T PF04053_consen 91 IKIYKNFKNE---------------VVKSIKLP-FSVEKIF------GGNLLGVKSS-DFICFYDWETGKLIRRIDVSA- 146 (443)
T ss_dssp EEEEETTEE----------------TT-----S-S-EEEEE-------SSSEEEEET-TEEEEE-TTT--EEEEESS-E-
T ss_pred EEEEEcCccc---------------cceEEcCC-cccceEE------cCcEEEEECC-CCEEEEEhhHcceeeEEecCC-
Confidence 9997432111 00011100 1122221 2566666654 489999999999999997653
Q ss_pred ceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCC
Q 000654 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS 258 (1371)
Q Consensus 179 ~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~ 258 (1371)
+..+.| ++++.+++..+ +..+.|++........ ...++ -...+..+..-...
T Consensus 147 --vk~V~W---s~~g~~val~t-~~~i~il~~~~~~~~~---------~~~~g-------------~e~~f~~~~E~~~~ 198 (443)
T PF04053_consen 147 --VKYVIW---SDDGELVALVT-KDSIYILKYNLEAVAA---------IPEEG-------------VEDAFELIHEISER 198 (443)
T ss_dssp ---EEEEE----TTSSEEEEE--S-SEEEEEE-HHHHHH---------BTTTB--------------GGGEEEEEEE-S-
T ss_pred --CcEEEE---ECCCCEEEEEe-CCeEEEEEecchhccc---------ccccC-------------chhceEEEEEecce
Confidence 223333 67888888887 5578887766110000 00000 01122233333567
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEEEEEeCCCeEEEEeC
Q 000654 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS 335 (1371)
Q Consensus 259 I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L~Sgs~Dg~I~VWd~ 335 (1371)
|.+..|..+ -++.|.. . .++. +..+.. . ++..-..+++=+.+.+ +.++....|+.+..+.+
T Consensus 199 IkSg~W~~d-~fiYtT~-~-~lkY--l~~Ge~------~-----~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 199 IKSGCWVED-CFIYTTS-N-HLKY--LVNGET------G-----IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp -SEEEEETT-EEEEE-T-T-EEEE--EETTEE------E-----EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred eEEEEEEcC-EEEEEcC-C-eEEE--EEcCCc------c-----eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 888888766 3333332 2 5555 333322 1 2222234455555554 67777777777776665
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.15 E-value=15 Score=43.82 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=38.9
Q ss_pred ccEEEEeCCCCc------ccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEE
Q 000654 4 KDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLI 57 (1371)
Q Consensus 4 ~tV~iWdl~~~~------h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l 57 (1371)
+.+.|+|+.+++ ....+....++ |+ ++.++...++.|.+++..+++..
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~s--P~----g~~~~~v~~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWS--PD----GKYIAFVRDNNLYLRDLATGQET 76 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE---SS----STEEEEEETTEEEEESSTTSEEE
T ss_pred eeEEEEecCCCceEECcCCccccccceee--cC----CCeeEEEecCceEEEECCCCCeE
Confidence 457889999986 23568899999 99 89999999999999999888554
No 351
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.02 E-value=0.019 Score=68.89 Aligned_cols=203 Identities=15% Similarity=0.217 Sum_probs=120.5
Q ss_pred CcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEE-EEEecCCcceEEEEEeeccCCCCcEEEEEe----CCCeEEE
Q 000654 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGT----IYNEIIV 207 (1371)
Q Consensus 133 ~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~-~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs----~dg~I~v 207 (1371)
..+.|++..- +.+...++.|..+|.|.+-......-. .++..+....+.++++. +.|...||+|- .|..+.|
T Consensus 57 qy~kcva~~y-~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwn--eLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 57 QYVKCVASFY-GNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWN--ELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCceeehhhc-CCchhhhhhccccCceEEeecCCcccccceecccccccccccccc--cccHHHHHhhhhhhcccCCccc
Confidence 4577777765 124457899999999999877654332 23333333334455442 44677888873 4678999
Q ss_pred EEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000654 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1371)
Q Consensus 208 Wd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~ 287 (1371)
||+.+.=-.|. ....... +-.....++.|..+.+++++|...+.+.++|++.
T Consensus 134 wdi~s~ltvPk--------------------------e~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 134 WDINSLLTVPK--------------------------ESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred eecccccCCCc--------------------------ccccccc--ccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 99882210010 0000100 1233344788888889999999999999999984
Q ss_pred CcccCCCCceeeeceEeecCCccEEEEE---EcCCEEEEEeCCCeEEEEeC--C-CcEEEEEeeccC---cCEEEEEEcC
Q 000654 288 EYWKDSDSIEEVGSSVLYGHNARVWDCC---LTDSFIITAGEDCTCRVWGS--D-GKQLKMIKEHIG---RGIWRCLYDS 358 (1371)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~gh~~~I~~l~---~s~~~L~Sgs~Dg~I~VWd~--~-g~~l~~l~~h~~---~~V~sl~~sp 358 (1371)
.... ...+ .+..+..+. |.++++++-. ||.|.+||. . .+++..+..... +.+..++|.|
T Consensus 186 s~~~----~~sv-------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 186 SLDS----VSSV-------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhhh----hhhh-------hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEecc
Confidence 3220 1111 111222233 3468888777 999999994 1 223322221111 1388999998
Q ss_pred CCC-EEEEEEC-CCcEEEEEcC
Q 000654 359 LSS-LLVTAGF-DSAIKVHQFQ 378 (1371)
Q Consensus 359 dg~-~L~Tgg~-Dg~I~lwdl~ 378 (1371)
... .+++... .++|+++++.
T Consensus 254 trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcchhhhhccCcceEEEeccc
Confidence 644 5556555 5689999983
No 352
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.80 E-value=19 Score=43.07 Aligned_cols=200 Identities=14% Similarity=0.150 Sum_probs=93.3
Q ss_pred CCEEEEEe--CCcEEEEECCC----CeEEEEEEe---ecC---ccEEEEEeeccccccCCCCcceeeEEEEECC------
Q 000654 35 LPFLLAGS--GSQVLLYDLEA----GTLIRPFQV---FHG---IRLHGISCNFINCTEGSVSTRVTFEVALFGE------ 96 (1371)
Q Consensus 35 ~~llaaG~--dg~I~Iwd~~s----g~~l~~~~~---~~~---~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd------ 96 (1371)
+++|++.. .+.|.|+|..+ -++.+.+.. ++. ..-|.+... |+|+ .++.+-|+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl-------p~G~---imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL-------PDGR---IMISALGDADGNGP 156 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE--------SS-----EEEEEEEETTS-S-
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec-------CCcc---EEEEeccCCCCCCC
Confidence 67777766 59999999874 355555542 111 123333333 7773 45554441
Q ss_pred CeEEEEEeccCCCCCCCCCCccceeeeeeeecc---CCCCcEEEEEEEeecCCCcEEEEEE-------------------
Q 000654 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLP---RLSHWVFDVCFLKVCNGNRSLAIGC------------------- 154 (1371)
Q Consensus 97 ~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~---gh~~~I~~v~fsp~~~dg~~Latgs------------------- 154 (1371)
+.+.++|-++ ++....-. +....-.++-+.| ..+.++|..
T Consensus 157 Ggf~llD~~t---------------f~v~g~We~~~~~~~~gYDfw~qp---r~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 157 GGFVLLDGET---------------FEVKGRWEKDRGPQPFGYDFWYQP---RHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp -EEEEE-TTT-----------------EEEE--SB-TT------EEEET---TTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CcEEEEcCcc---------------ccccceeccCCCCCCCCCCeEEcC---CCCEEEEeccCChhhcccCCChhHhhcc
Confidence 4566666553 12221111 1122345556666 555555532
Q ss_pred -CCCcEEEEECCCCeEEEEEecCC-cceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000654 155 -SDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1371)
Q Consensus 155 -~Dg~I~vWd~~~~~~~~~l~~~~-~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1371)
.-+++.+||+.+.+.++++.-+. ..+...++|..+.....-++.+.-.++|..|--..
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-------------------- 278 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-------------------- 278 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E--------------------
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC--------------------
Confidence 24679999999999999988654 44677888876544444455555556666664420
Q ss_pred CcceeeecccccceeeEEEEe-----------------cccCCEEEEEEcCCCCEEE-EEeCCCcEEEEEccCCcc
Q 000654 233 DFKCFKLQDQQHTAVNLFRLV-----------------GHEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYW 290 (1371)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~l~-----------------gH~~~I~~v~~spdg~~La-S~s~Dg~VriWdl~~~~~ 290 (1371)
++. | ..+.+..+. .-..-|+.|..|.|.++|. ++=.+|.||.||+.+...
T Consensus 279 -~g~---W----~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 279 -DGE---W----AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp -TTE---E----EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred -CCC---e----eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 000 0 111111111 1134578999999999875 556799999999998765
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.79 E-value=1.6 Score=42.01 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=65.2
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-CCEEEEEeCCCeEEEE
Q 000654 259 IFRIEWSS---CG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1371)
Q Consensus 259 I~~v~~sp---dg-~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-~~~L~Sgs~Dg~I~VW 333 (1371)
|+++++.. || ..|+.||+|..||+|+-..-- .-..-...|.+++.. +..++.+-++|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~-------------~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV-------------AEITETDKVTSLCSLGGGRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE-------------EEEecccceEEEEEcCCCEEEEEecCCEEEEE
Confidence 45565543 33 579999999999999865421 223334567777665 7899999999999999
Q ss_pred eCCCcEEEEEeeccCcCEEEEEE-cCC--CC-EEEEEECCCcEE
Q 000654 334 GSDGKQLKMIKEHIGRGIWRCLY-DSL--SS-LLVTAGFDSAIK 373 (1371)
Q Consensus 334 d~~g~~l~~l~~h~~~~V~sl~~-spd--g~-~L~Tgg~Dg~I~ 373 (1371)
+-.. .+...+... .+.++++ ..+ |. -|++|-.+|.|-
T Consensus 69 ~~~~-RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 69 DRSQ-RLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eCcc-eeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 8632 333333322 2566654 333 32 688888888774
No 354
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.59 E-value=8.9 Score=43.22 Aligned_cols=185 Identities=10% Similarity=0.063 Sum_probs=115.2
Q ss_pred ccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEE
Q 000654 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (1371)
Q Consensus 128 l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~v 207 (1371)
+.|-...|.++.|+| +.+.|.+......-.||=..+|+.+.++.-..-.-.-.+.+ ..++.++++--.++.+.+
T Consensus 81 i~g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey---ig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 81 ILGETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY---IGGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE---ecCCEEEEEehhcceEEE
Confidence 345556699999999 88888777777777777777888888876332222223344 245667777778889998
Q ss_pred EEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000654 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1371)
Q Consensus 208 Wd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~ 287 (1371)
+.+....-. +.+ +. ..-++.....-...--.++|.|....|..+=+-.-++|+.+..
T Consensus 155 ~~vd~~t~~--------------------~~~-~~--~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 155 FTVDADTTV--------------------ISA-KV--QKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EEEcCCccE--------------------Eec-cc--eEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 887711000 000 00 0011111111144566799999998888888877888888764
Q ss_pred CcccCCCCceeeeceEeecCC-------ccEEEEEEc---CCEEEEEeCCCeEEEEeCCCcEEEEEeeccC
Q 000654 288 EYWKDSDSIEEVGSSVLYGHN-------ARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG 348 (1371)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~gh~-------~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~ 348 (1371)
.... .... ....+. ..|.++.|+ +..|+-+.+++.+.-.|.+|.++..+..+.+
T Consensus 212 ~~~~--l~~~-----~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g 275 (316)
T COG3204 212 SPSS--LSVH-----ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKG 275 (316)
T ss_pred CCcc--cccc-----cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccC
Confidence 3311 0000 111111 245667776 5788889999999999998888777665544
No 355
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.48 E-value=0.15 Score=41.10 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=29.0
Q ss_pred cCCcEEEEEeecCCCEEEEecCCCeEEEEEcC
Q 000654 579 FGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (1371)
Q Consensus 579 h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~ 610 (1371)
...+|.+++|+|..++||.|+.+|.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 35569999999999999999999999999984
No 356
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.03 E-value=19 Score=40.58 Aligned_cols=99 Identities=13% Similarity=0.140 Sum_probs=64.7
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeee
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~ 123 (1371)
..|+.+|+++|+.+.+.......-=.||++. .|- ....++-++...+||..+ ++
T Consensus 68 S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-------~d~----l~qLTWk~~~~f~yd~~t---------------l~ 121 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPLPPRYFGEGITIL-------GDK----LYQLTWKEGTGFVYDPNT---------------LK 121 (264)
T ss_dssp EEEEEEETTTSSEEEEEE-TTT--EEEEEEE-------TTE----EEEEESSSSEEEEEETTT---------------TE
T ss_pred EEEEEEECCCCcEEEEEECCccccceeEEEE-------CCE----EEEEEecCCeEEEEcccc---------------ce
Confidence 6999999999998877775444445577776 442 677778899999999975 44
Q ss_pred eeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEe
Q 000654 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1371)
Q Consensus 124 ~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~ 174 (1371)
.+.++.. .+.=+.++ . +++.|+.......+.++|..+.+...++.
T Consensus 122 ~~~~~~y-~~EGWGLt--~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--S---DGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EEEEEE--SSS--EEE--E---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred EEEEEec-CCcceEEE--c---CCCEEEEECCccceEEECCcccceEEEEE
Confidence 4444432 23334555 3 66667666667789999998877766654
No 357
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.01 E-value=20 Score=40.89 Aligned_cols=255 Identities=12% Similarity=0.126 Sum_probs=122.6
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCC
Q 000654 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1371)
Q Consensus 35 ~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~ 114 (1371)
+..|+.|++.-|.+|+........... +...|..+... |+- ..+++-.|+.+.++++..-.......
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~--~~~~I~ql~vl-------~~~----~~llvLsd~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRIL--KLSSITQLSVL-------PEL----NLLLVLSDGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEe--ecceEEEEEEe-------ccc----CEEEEEcCCccEEEEchhhccccccc
Confidence 567777775339999983332222222 12248888888 654 35555567999999997532111000
Q ss_pred CCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC-----eEEEEEecCCcceEEEEEeecc
Q 000654 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWGD 189 (1371)
Q Consensus 115 ~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~-----~~~~~l~~~~~~~v~s~~~~~~ 189 (1371)
+-..-..............+...+..........|+.+ ..+.|.+|..... +..+++..+. .+.++.+.
T Consensus 74 -~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~--~~~~i~~~-- 147 (275)
T PF00780_consen 74 -PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPD--PPSSIAFL-- 147 (275)
T ss_pred -cccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCC--CcEEEEEe--
Confidence 00000000000001122234444411111133445544 4568988877553 4555665553 34556553
Q ss_pred CCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCC
Q 000654 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (1371)
Q Consensus 190 s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~ 269 (1371)
+..++.|. .+...+.|+.++....... ................++..+.. +++.
T Consensus 148 ---~~~i~v~~-~~~f~~idl~~~~~~~l~~---------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~e 201 (275)
T PF00780_consen 148 ---GNKICVGT-SKGFYLIDLNTGSPSELLD---------------------PSDSSSSFKSRNSSSKPLGIFQL-SDNE 201 (275)
T ss_pred ---CCEEEEEe-CCceEEEecCCCCceEEeC---------------------ccCCcchhhhcccCCCceEEEEe-CCce
Confidence 45666666 4457777877322111100 00000000000111122333333 3445
Q ss_pred EEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC-CCcEEEEEeecc
Q 000654 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1371)
Q Consensus 270 ~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~ 347 (1371)
+|++. |..-.+-|...... + .....+ ...+..+++...+|+..+.++ |-||++ +++.++.+....
T Consensus 202 ~Ll~~--~~~g~fv~~~G~~~------r--~~~i~W--~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 202 FLLCY--DNIGVFVNKNGEPS------R--KSTIQW--SSAPQSVAYSSPYLIAFSSNS-IEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEEEe--cceEEEEcCCCCcC------c--ccEEEc--CCchhEEEEECCEEEEECCCE-EEEEECcCCcEEEEEECCC
Confidence 66543 22333444433211 1 000112 235667777777888877654 999999 888888887543
No 358
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.83 E-value=23 Score=41.19 Aligned_cols=118 Identities=10% Similarity=-0.044 Sum_probs=69.9
Q ss_pred eeeEEEEecccCCEEEEEEcCCCCEEEEEeC-CCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEE
Q 000654 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1371)
Q Consensus 246 ~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~ 322 (1371)
+..+..+.+|-..-+.|+||||++.|..+.. .+.|.-|++............ . .......+..-.++.. +.+.+
T Consensus 152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~-~--~~~~~~~G~PDG~~vDadG~lw~ 228 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG-F--VDFDEEPGLPDGMAVDADGNLWV 228 (307)
T ss_pred CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce-E--EEccCCCCCCCceEEeCCCCEEE
Confidence 4444455555566678999999987766544 467777776531110001000 0 1222233444455555 44444
Q ss_pred EEeCCC-eEEEEeCCCcEEEEEeeccCcCEEEEEE-cCCCCEEEEEE
Q 000654 323 TAGEDC-TCRVWGSDGKQLKMIKEHIGRGIWRCLY-DSLSSLLVTAG 367 (1371)
Q Consensus 323 Sgs~Dg-~I~VWd~~g~~l~~l~~h~~~~V~sl~~-spdg~~L~Tgg 367 (1371)
++..+| .|.+|+.+|+++..+..... .+++++| .|+.+.|...+
T Consensus 229 ~a~~~g~~v~~~~pdG~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 229 AAVWGGGRVVRFNPDGKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ecccCCceEEEECCCCcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 444443 89999999999999888865 4889998 45555544433
No 359
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.80 E-value=0.1 Score=64.67 Aligned_cols=118 Identities=12% Similarity=0.066 Sum_probs=86.5
Q ss_pred eeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEE
Q 000654 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (1371)
Q Consensus 246 ~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~S 323 (1371)
.+....+..|...-++++|+.+.+.|+.|+..|.|+++++.++... ....+|...|+-+.-+ +..+++
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e----------~s~ncH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME----------ESVNCHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc----------ccccccccccccccccCCcceeee
Confidence 3455667788899999999999999999999999999999998652 2778999999998876 555555
Q ss_pred EeCCC--eEEEEeC--CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 324 AGEDC--TCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 324 gs~Dg--~I~VWd~--~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
.+.-. -..+|++ .+.+.+.|.+ -.++.|+.....-+.|..-....+||++
T Consensus 1161 sss~S~PlsaLW~~~s~~~~~Hsf~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvq 1214 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTGGPRHSFDE-----DKAVKFSNSLQFRALGTEADDALLYDVQ 1214 (1516)
T ss_pred eccccCchHHHhccccccCccccccc-----cceeehhhhHHHHHhcccccceEEEecc
Confidence 44333 4679998 5566655543 3467887654433334333568899994
No 360
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.74 E-value=12 Score=41.69 Aligned_cols=100 Identities=11% Similarity=0.142 Sum_probs=64.7
Q ss_pred EEEEEEecCCCCCCCCEEEEEe--CCcEEEEECCCCeEEEEEEeecCcc--EEEEEeeccccccCCCCcceeeEEEEE-C
Q 000654 21 SALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIR--LHGISCNFINCTEGSVSTRVTFEVALF-G 95 (1371)
Q Consensus 21 tavafs~~pd~~~~~~llaaG~--dg~I~Iwd~~sg~~l~~~~~~~~~~--I~~i~~s~~~~~~~pdg~~~~~~la~~-g 95 (1371)
..++|+ |. . .+-++.+- +-.-.+||..+++.+.++...++.- =|+ .|| ||| .+|.+. .
T Consensus 71 Hgi~~~--p~--~-~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG-vfs-------~dG----~~LYATEn 133 (366)
T COG3490 71 HGIAFH--PA--L-PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG-VFS-------PDG----RLLYATEN 133 (366)
T ss_pred CCeecC--CC--C-cceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc-ccC-------CCC----cEEEeecC
Confidence 467777 75 2 23333333 4678899998887665554322211 123 378 999 444444 3
Q ss_pred C-----CeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEE
Q 000654 96 E-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1371)
Q Consensus 96 d-----~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs 154 (1371)
| |.|-|||.... +..+..+..|.=.-..+.+.+ ||..|+.+.
T Consensus 134 dfd~~rGViGvYd~r~~--------------fqrvgE~~t~GiGpHev~lm~---DGrtlvvan 180 (366)
T COG3490 134 DFDPNRGVIGVYDAREG--------------FQRVGEFSTHGIGPHEVTLMA---DGRTLVVAN 180 (366)
T ss_pred CCCCCCceEEEEecccc--------------cceecccccCCcCcceeEEec---CCcEEEEeC
Confidence 2 78999998742 566677777877778899999 999888763
No 361
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=92.35 E-value=30 Score=41.28 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=41.7
Q ss_pred CCEEEEE----------eCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEe
Q 000654 35 LPFLLAG----------SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFEL 104 (1371)
Q Consensus 35 ~~llaaG----------~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl 104 (1371)
+++++.. ..+.+.|||+++++....... . ..+....|| |+| ..++...++.|.+++.
T Consensus 4 ~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~-~~~~~~~~s-------P~g----~~~~~v~~~nly~~~~ 70 (353)
T PF00930_consen 4 GKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P-PKLQDAKWS-------PDG----KYIAFVRDNNLYLRDL 70 (353)
T ss_dssp SSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E-TTBSEEEE--------SSS----TEEEEEETTEEEEESS
T ss_pred CCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c-cccccceee-------cCC----CeeEEEecCceEEEEC
Confidence 6666663 237899999999876433332 2 368888999 998 6788778899999987
Q ss_pred cc
Q 000654 105 NF 106 (1371)
Q Consensus 105 ~~ 106 (1371)
..
T Consensus 71 ~~ 72 (353)
T PF00930_consen 71 AT 72 (353)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 362
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=4.1 Score=48.87 Aligned_cols=122 Identities=9% Similarity=0.018 Sum_probs=81.0
Q ss_pred ceeeEEEEecccCCEEEEEEcCCCC--E-----EEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecC----CccEEE
Q 000654 245 TAVNLFRLVGHEGSIFRIEWSSCGS--K-----LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH----NARVWD 313 (1371)
Q Consensus 245 ~~~~~~~l~gH~~~I~~v~~spdg~--~-----LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh----~~~I~~ 313 (1371)
.++.+....-|.. |.-+.+.|+.+ . -+.|-.|..|.-||.+-.... .+ ....+| .....|
T Consensus 365 ~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~------kl--~~~q~kqy~~k~nFsc 435 (644)
T KOG2395|consen 365 RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN------KL--AVVQSKQYSTKNNFSC 435 (644)
T ss_pred cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc------ee--eeeeccccccccccce
Confidence 5566666665555 77777777653 1 234556778889998854320 11 122333 233455
Q ss_pred EEEc-CCEEEEEeCCCeEEEEeCCCcEEEE-EeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 314 CCLT-DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 314 l~~s-~~~L~Sgs~Dg~I~VWd~~g~~l~~-l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
.+-. ..+|+.|+.+|.||+||..+..-++ +.+-.. +|..+..+.+|++|+..+ +..+.+.++
T Consensus 436 ~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 436 FATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeecCCceEEEeecCCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 5544 5899999999999999986555444 555555 899999999999987665 557777776
No 363
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.09 E-value=36 Score=41.55 Aligned_cols=199 Identities=15% Similarity=0.126 Sum_probs=97.1
Q ss_pred EEEEEEcCCCCEEEEE-eCCC----cEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC--CEE-EEEeCC---
Q 000654 259 IFRIEWSSCGSKLVSV-SDDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFI-ITAGED--- 327 (1371)
Q Consensus 259 I~~v~~spdg~~LaS~-s~Dg----~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~--~~L-~Sgs~D--- 327 (1371)
+....++|+++++|-+ +..| .+++.|+.+++. +.. .+.. .....+.|.+ ..| .+...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-----l~d----~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-----LPD----GIEN--PKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE-----EEE----EEEE--EESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC-----cCC----cccc--cccceEEEeCCCCEEEEEEeCcccc
Confidence 3457789999988743 4434 599999998754 110 1111 1112378873 444 444222
Q ss_pred -------CeEEEEeC-CC--cEEEEEeeccCcC-EEEEEEcCCCCEEEEEEC-C---CcEEEEEcCCCCcccccCCCccc
Q 000654 328 -------CTCRVWGS-DG--KQLKMIKEHIGRG-IWRCLYDSLSSLLVTAGF-D---SAIKVHQFQAFLPGSLESHPEAK 392 (1371)
Q Consensus 328 -------g~I~VWd~-~g--~~l~~l~~h~~~~-V~sl~~spdg~~L~Tgg~-D---g~I~lwdl~~~~~~~l~~~~~~~ 392 (1371)
..|+.|.+ +. +-...+....... ...+..++|+++|+.... . ..+.+.++.... .
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~----~------ 264 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG----S------ 264 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT----T------
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC----C------
Confidence 23777777 33 2234444444423 567888999998765443 2 235555553210 0
Q ss_pred cccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEc----CCcEEEEEeecCCCceeEEeE-eecCCccE
Q 000654 393 EFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN----HGYLYHTKLCDMDSVNWNKIL-QVSEGMPI 467 (1371)
Q Consensus 393 ~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~----~G~i~~~~l~~~~~~~w~~i~-~~~~~~~I 467 (1371)
.......+ ......+....-...+.+++.++ +++|+.+.+.......|..++ .......+
T Consensus 265 ---~~~~~~~l------------~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l 329 (414)
T PF02897_consen 265 ---PDAKPKLL------------SPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL 329 (414)
T ss_dssp ---SS-SEEEE------------EESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred ---CcCCcEEE------------eCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence 00011111 11111222222222556666664 466776666555544565343 33333355
Q ss_pred EEEeecCCCCCCCCCCCCEEEEEeCCC--cEEEEEEc
Q 000654 468 ICMDLLSNEPKYPCGIDDWVALGDGKG--NMTIVRVV 502 (1371)
Q Consensus 468 ~~ld~~~~~~~~s~~~~~lla~gs~dG--~I~iwdi~ 502 (1371)
..+.+. .+.+++....++ .|+++++.
T Consensus 330 ~~~~~~---------~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 330 EDVSLF---------KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEE---------TTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEE---------CCEEEEEEEECCccEEEEEECC
Confidence 555552 235666666666 46666666
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.03 E-value=32 Score=40.89 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=45.3
Q ss_pred CEEEEEe-C--CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCC
Q 000654 36 PFLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1371)
Q Consensus 36 ~llaaG~-d--g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~ 112 (1371)
++|+++. + ..+.+.|+++++..+--. ..+....+..++ |+++ .++.+..+++|+-.|+++..
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~i~QLTd-g~g~~~~g~~~s-------~~~~---~~~Yv~~~~~l~~vdL~T~e---- 113 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGEITQLTD-GPGDNTFGGFLS-------PDDR---ALYYVKNGRSLRRVDLDTLE---- 113 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE--------TTSS---EEEEEETTTEEEEEETTT------
T ss_pred EEEEEeccCCCcceEEEEcccCEEEECcc-CCCCCccceEEe-------cCCC---eEEEEECCCeEEEEECCcCc----
Confidence 5666665 3 688888999988754333 232234456666 6652 34445567889888888633
Q ss_pred CCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEE
Q 000654 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1371)
Q Consensus 113 ~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~La 151 (1371)
.+.+..+ ..+++-...|.. +.++..++
T Consensus 114 ---------~~~vy~~--p~~~~g~gt~v~-n~d~t~~~ 140 (386)
T PF14583_consen 114 ---------ERVVYEV--PDDWKGYGTWVA-NSDCTKLV 140 (386)
T ss_dssp ---------EEEEEE----TTEEEEEEEEE--TTSSEEE
T ss_pred ---------EEEEEEC--Ccccccccceee-CCCccEEE
Confidence 2333333 356666666654 12555543
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.89 E-value=0.054 Score=65.26 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=110.3
Q ss_pred EEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC----CCcEEEEEC
Q 000654 90 EVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS----DNSIRVWDI 164 (1371)
Q Consensus 90 ~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~----Dg~I~vWd~ 164 (1371)
+++++. +|.|.+-.+..... .--...++|....++++|++. |...||.|-. |-.+.|||+
T Consensus 72 IlavG~atG~I~l~s~r~~hd-------------Ss~E~tp~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHD-------------SSAEVTPGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred hhhhccccCceEEeecCCccc-------------ccceecccccccccccccccc--cHHHHHhhhhhhcccCCccceec
Confidence 444443 68888887765331 111234578889999999983 5566776632 668999999
Q ss_pred CCCeE--E--EEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeec
Q 000654 165 SNSSI--I--LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1371)
Q Consensus 165 ~~~~~--~--~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~ 240 (1371)
.++-. . ..+.........++++ -.+..+|.+|.....+.++|++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cw---lrd~klvlaGm~sr~~~ifdlRqs--------------------------- 186 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCW---LRDTKLVLAGMTSRSVHIFDLRQS--------------------------- 186 (783)
T ss_pred ccccCCCccccccccccccCcccccc---ccCcchhhcccccchhhhhhhhhh---------------------------
Confidence 87621 1 1121211111123333 245678888888889999988711
Q ss_pred ccccceeeEEEEecccCCEEEEEEcC-CCCEEEEEeCCCcEEEEEc-cCCcccCCCCceeeeceEeecCCccEEEEEEcC
Q 000654 241 DQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEV-RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD 318 (1371)
Q Consensus 241 ~~~~~~~~~~~l~gH~~~I~~v~~sp-dg~~LaS~s~Dg~VriWdl-~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~ 318 (1371)
. .....-.+..+..+...| .+.++++-+ |+.|-+||. ..-+.+ ++.+. ........++..++|.|
T Consensus 187 -----~--~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp----l~~i~-~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 187 -----L--DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP----LQIIL-RNENKKPKQLFALAYCP 253 (783)
T ss_pred -----h--hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH----HHHHh-hCCCCcccceeeEEecc
Confidence 0 001111234566777888 778888776 889999993 332211 11000 01111223588889984
Q ss_pred ---CEEEEEeCC-CeEEEEeC
Q 000654 319 ---SFIITAGED-CTCRVWGS 335 (1371)
Q Consensus 319 ---~~L~Sgs~D-g~I~VWd~ 335 (1371)
..+++...| ++|+.+++
T Consensus 254 trtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred CCcchhhhhccCcceEEEecc
Confidence 567776655 67899987
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=0.62 Score=56.69 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=55.5
Q ss_pred CCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEE-EEEEcCCC
Q 000654 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF-RIEWSSCG 268 (1371)
Q Consensus 190 s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~-~v~~spdg 268 (1371)
+|.-.++|.++.+|.|.+..+. .+.+-.+.-|...++ +++|.|||
T Consensus 29 nP~~dLiA~~t~~gelli~R~n----------------------------------~qRlwtip~p~~~v~~sL~W~~DG 74 (665)
T KOG4640|consen 29 NPKMDLIATRTEKGELLIHRLN----------------------------------WQRLWTIPIPGENVTASLCWRPDG 74 (665)
T ss_pred cCccchhheeccCCcEEEEEec----------------------------------cceeEeccCCCCccceeeeecCCC
Confidence 7888899999999999998876 233444554555566 99999999
Q ss_pred CEEEEEeCCCcEEEEEccCCcc
Q 000654 269 SKLVSVSDDRSARIWEVRAEYW 290 (1371)
Q Consensus 269 ~~LaS~s~Dg~VriWdl~~~~~ 290 (1371)
+.||.|-.||+|++.|+.++..
T Consensus 75 kllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred CEEEEEecCCeEEEEEccCCCc
Confidence 9999999999999999998755
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=91.11 E-value=32 Score=41.58 Aligned_cols=195 Identities=11% Similarity=0.106 Sum_probs=115.6
Q ss_pred EEEEEecCCCCCCCC-EEEEE-eCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC---C
Q 000654 22 ALCFVHLPSHLSSLP-FLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---E 96 (1371)
Q Consensus 22 avafs~~pd~~~~~~-llaaG-~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g---d 96 (1371)
.++++ ++ +. ..+.. .++.|.+.|..+.+.++...... .-++++++ |+++ .+.++-. +
T Consensus 78 ~i~v~--~~----~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~-------~~~~---~vYV~n~~~~~ 139 (381)
T COG3391 78 GVAVN--PA----GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVD-------PDGK---YVYVANAGNGN 139 (381)
T ss_pred ceeeC--CC----CCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEEC-------CCCC---EEEEEecccCC
Confidence 55666 55 34 33333 36999999988888877777543 57889999 8874 4444433 4
Q ss_pred CeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEE-ECCCcEEEEECCCCeEEE-EEe
Q 000654 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIIL-EVH 174 (1371)
Q Consensus 97 ~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latg-s~Dg~I~vWd~~~~~~~~-~l~ 174 (1371)
+++.+.|-.+. +.......-..+ ..+++.| +|..++.+ ..++.|.+.|........ ...
T Consensus 140 ~~vsvid~~t~---------------~~~~~~~vG~~P-~~~a~~p---~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~ 200 (381)
T COG3391 140 NTVSVIDAATN---------------KVTATIPVGNTP-TGVAVDP---DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVG 200 (381)
T ss_pred ceEEEEeCCCC---------------eEEEEEecCCCc-ceEEECC---CCCeEEEEecCCCeEEEEeCCCcceeccccc
Confidence 66776666542 222222222234 8999999 98866555 478999999976655543 100
Q ss_pred --cCCcceEEEEEeeccCCCCcEEEEEeCC---CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeE
Q 000654 175 --SPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1371)
Q Consensus 175 --~~~~~~v~s~~~~~~s~d~~~Lasgs~d---g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~ 249 (1371)
.......+.+.+ ++++.+++..... +.+...|.. .....
T Consensus 201 ~~~~~~~~P~~i~v---~~~g~~~yV~~~~~~~~~v~~id~~---------------------------------~~~v~ 244 (381)
T COG3391 201 SLVGVGTGPAGIAV---DPDGNRVYVANDGSGSNNVLKIDTA---------------------------------TGNVT 244 (381)
T ss_pred cccccCCCCceEEE---CCCCCEEEEEeccCCCceEEEEeCC---------------------------------CceEE
Confidence 011111122333 6777766554433 477777776 22222
Q ss_pred EE-Ee-cccCCEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCcc
Q 000654 250 FR-LV-GHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYW 290 (1371)
Q Consensus 250 ~~-l~-gH~~~I~~v~~spdg~~LaS~s-~Dg~VriWdl~~~~~ 290 (1371)
.. .. +-. ....+...|+++.+.+.. ..+.+.+-|......
T Consensus 245 ~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 245 ATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 21 11 112 456788999999887763 447788888776543
No 368
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.07 E-value=38 Score=39.97 Aligned_cols=109 Identities=9% Similarity=0.096 Sum_probs=57.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC-----CEEEEEeCC-----
Q 000654 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-----SFIITAGED----- 327 (1371)
Q Consensus 258 ~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~-----~~L~Sgs~D----- 327 (1371)
..+.|+|.||++++++ ...|.|++++ ..+... ..+..+. .+..........+++++ .+|......
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~--~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLK--TPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEEC--EEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCc--ceecccc-cccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 4578999999887765 5599999999 332210 0011111 12234455788999986 455544331
Q ss_pred --C--eEEEEeC-CC-------c-EEEEEee--ccCcCEEEEEEcCCCCEEEEEECCCc
Q 000654 328 --C--TCRVWGS-DG-------K-QLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1371)
Q Consensus 328 --g--~I~VWd~-~g-------~-~l~~l~~--h~~~~V~sl~~spdg~~L~Tgg~Dg~ 371 (1371)
. .|.-|.. .+ + .+..+.. .....-..|+|.|||.+.++.|..+.
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 1 3444444 22 1 1112222 11113567999999987777776544
No 369
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.04 E-value=64 Score=42.47 Aligned_cols=114 Identities=13% Similarity=0.154 Sum_probs=61.8
Q ss_pred CEEEEEeCCcEEEEECCCCeEEEEEE---eecCccEEEEEeeccccccCCCCcceeeEEEEEC-CCeEEEEEeccCCCCC
Q 000654 36 PFLLAGSGSQVLLYDLEAGTLIRPFQ---VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPN 111 (1371)
Q Consensus 36 ~llaaG~dg~I~Iwd~~sg~~l~~~~---~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d~sV~vwdl~~~~~~~ 111 (1371)
.++++-++|.+..+....+..+.++. ..+ ..|.++++.+. +.|.+..++++.+. +++++++.+....
T Consensus 551 qiVvalSngelvyfe~d~sgql~E~~er~tl~-~~vac~ai~~~-----~~g~krsrfla~a~~d~~vriisL~p~d--- 621 (1205)
T KOG1898|consen 551 QIVVALSNGELVYFEGDVSGQLNEFTERVTLS-TDVACLAIGQD-----PEGEKRSRFLALASVDNMVRIISLDPSD--- 621 (1205)
T ss_pred EEEEEccCCeEEEEEeccCccceeeeeeeeec-eeehhhccCCC-----CcchhhcceeeeeccccceeEEEecCcc---
Confidence 34444456777777664333333443 222 35788888744 44433345566665 8999999987422
Q ss_pred CCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCC------cEEEEEECCCcEEEE--ECCCCe
Q 000654 112 SQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN------RSLAIGCSDNSIRVW--DISNSS 168 (1371)
Q Consensus 112 ~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg------~~Latgs~Dg~I~vW--d~~~~~ 168 (1371)
.-..-...+-..++.++.+-+...++ -+|-+|-.+|.+.-. |..+|.
T Consensus 622 ----------~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~ 676 (1205)
T KOG1898|consen 622 ----------CLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQ 676 (1205)
T ss_pred ----------eEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccc
Confidence 11112233445566666665533233 256677777765433 444553
No 370
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.60 E-value=11 Score=47.42 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=41.1
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEecc
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF 106 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~ 106 (1371)
..|+||++ +|+++.++.-.++ ++.++.|+ .+- .+|++..+|++++|++..
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs-------~~e----eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHG-ELIGMGWS-------DDE----ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEec-cccchHHHHhcCC-Ceeeeccc-------CCc----eEEEEeccceEEEeecch
Confidence 67999996 6888887776666 79999999 553 788889999999999874
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.39 E-value=0.63 Score=50.10 Aligned_cols=106 Identities=18% Similarity=0.142 Sum_probs=66.5
Q ss_pred CCcEEEEEECCCcEEEEECCCCeEEE-EEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCC
Q 000654 146 GNRSLAIGCSDNSIRVWDISNSSIIL-EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1371)
Q Consensus 146 dg~~Latgs~Dg~I~vWd~~~~~~~~-~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~ 224 (1371)
-+..|++|+.+|.|.+|.....-... .+......+... ++...++.+..++..+|.|+.|+..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~---Ip~~~~~~~~c~~~~dg~ir~~n~~------------- 132 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG---IPNGRDSSLGCVGAQDGRIRACNIK------------- 132 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceec---cccccccceeEEeccCCceeeeccc-------------
Confidence 34568999999999999876211111 111111111111 1224456788999999999999998
Q ss_pred CCCCCCCCCcceeeecccccceeeEEEEeccc-CCEEEEEEcCCCCEEEEE--eCCCcEEEEEccC
Q 000654 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSV--SDDRSARIWEVRA 287 (1371)
Q Consensus 225 ~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~-~~I~~v~~spdg~~LaS~--s~Dg~VriWdl~~ 287 (1371)
..+.+.....|+ .++.....+..+++++++ |.|..++.|++..
T Consensus 133 --------------------p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 133 --------------------PNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred --------------------cCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 444555555666 555555555666667666 7777777777765
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.25 E-value=38 Score=38.56 Aligned_cols=146 Identities=12% Similarity=-0.019 Sum_probs=83.3
Q ss_pred CCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEE
Q 000654 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1371)
Q Consensus 192 d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~L 271 (1371)
.+..|+.|+.+| +.+++... ........ +...|..+...|+-+.|
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~--------------------------------~~~~~~i~--~~~~I~ql~vl~~~~~l 50 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSD--------------------------------PSKPTRIL--KLSSITQLSVLPELNLL 50 (275)
T ss_pred CCCEEEEEECCC-EEEEEecC--------------------------------CccceeEe--ecceEEEEEEecccCEE
Confidence 467888899888 88888730 11111111 22339999999988887
Q ss_pred EEEeCCCcEEEEEccCCcccCCCCceeeec----eEeecCCccEEEEE----EcC-CEEEEEeCCCeEEEEeC-CC----
Q 000654 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGS----SVLYGHNARVWDCC----LTD-SFIITAGEDCTCRVWGS-DG---- 337 (1371)
Q Consensus 272 aS~s~Dg~VriWdl~~~~~~~~~~~~~~~~----~~~~gh~~~I~~l~----~s~-~~L~Sgs~Dg~I~VWd~-~g---- 337 (1371)
+.-++ +.+.++++..-............. .........+...+ ..+ ..|+.+ ...+|.+|.. ..
T Consensus 51 lvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f 128 (275)
T PF00780_consen 51 LVLSD-GQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSF 128 (275)
T ss_pred EEEcC-CccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccc
Confidence 77765 999999998754421000000000 00122223344444 112 344444 4458998887 21
Q ss_pred -cEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 338 -KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 338 -~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
+..+.+.... .+.+++|. ++.|+.|..+ .+.+.|+..
T Consensus 129 ~~~~ke~~lp~--~~~~i~~~--~~~i~v~~~~-~f~~idl~~ 166 (275)
T PF00780_consen 129 SKLLKEISLPD--PPSSIAFL--GNKICVGTSK-GFYLIDLNT 166 (275)
T ss_pred cceeEEEEcCC--CcEEEEEe--CCEEEEEeCC-ceEEEecCC
Confidence 3455555443 58899998 4556666544 578888853
No 373
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.05 E-value=54 Score=40.01 Aligned_cols=68 Identities=9% Similarity=0.069 Sum_probs=41.3
Q ss_pred CccEEEEEEc--CCEEEEEeCCCeEEEEeCC-CcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 308 NARVWDCCLT--DSFIITAGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 308 ~~~I~~l~~s--~~~L~Sgs~Dg~I~VWd~~-g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
.+++..++.+ ++++|.-..+|.+.|.+.+ .+.+..+..........+.|.-+...++.- ...+.+...
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~ 286 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGP 286 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECC
Confidence 3578888888 5788888899999998873 334444444422245677776554333322 334555443
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.04 E-value=18 Score=46.14 Aligned_cols=108 Identities=10% Similarity=0.093 Sum_probs=61.4
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEc---cCCcccCCCCceeeeceEe-ecCCccEEEEEEc-CCEEEEEeCCCe
Q 000654 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEV---RAEYWKDSDSIEEVGSSVL-YGHNARVWDCCLT-DSFIITAGEDCT 329 (1371)
Q Consensus 255 H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl---~~~~~~~~~~~~~~~~~~~-~gh~~~I~~l~~s-~~~L~Sgs~Dg~ 329 (1371)
..+.|..+.|||||.+++... ++.|.+=-+ ..+.. +...+..+ .+-...+.++.|. +..|+.+..++.
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~------~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~ 518 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY------ALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE 518 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce------eecccEEeecccCCccccceEecCCEEEEEecCCC
Confidence 346799999999999887766 466766322 22221 11111122 2233345778897 555667766666
Q ss_pred EEEEeC--CCcEEEEEeec--cCcCEEEEEEcCCCCEEEEEECCCcE
Q 000654 330 CRVWGS--DGKQLKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1371)
Q Consensus 330 I~VWd~--~g~~l~~l~~h--~~~~V~sl~~spdg~~L~Tgg~Dg~I 372 (1371)
-.+|.+ +|.....+... .. ++.+++-+++ .|+....+|.+
T Consensus 519 ~~v~~v~vDG~~~~~~~~~n~~~-~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 519 HPVWYVNLDGSNSDALPSRNLSA-PVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred CceEEEecCCccccccCCCCccC-ceEEEecCCc--eEEEEcCCceE
Confidence 667765 66554433331 33 5777777763 34444555533
No 375
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.80 E-value=31 Score=44.94 Aligned_cols=95 Identities=9% Similarity=0.052 Sum_probs=63.3
Q ss_pred CCcEEEEEeecCCCEEEEecCCCeEEEEEcCcc-----ccccccc-ccccccccccccccccCCcCeEEEEEeecCCCce
Q 000654 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD-----LLNDKSV-ALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQT 653 (1371)
Q Consensus 580 ~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~-----~~~~~~~-~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~ 653 (1371)
.-.|..+.++|+|.+||..+..|-. |-.+... .+..... ..++.++....++..+....|..+.|.+.+.++.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3468999999999999998887644 4444321 1111111 1222232233444444446899999999888889
Q ss_pred EEEEEcCCCcEEEEEEecCCcc
Q 000654 654 EIRSTGGDGCICYLEYDKDRES 675 (1371)
Q Consensus 654 ~L~T~g~DG~v~iw~l~~~~~~ 675 (1371)
+|+.-..|+++|+|++.....+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCC
Confidence 9999999999999999755443
No 376
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.66 E-value=68 Score=40.57 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=25.6
Q ss_pred cCCEEEEEeCCCeEEEEeC-CCcEEEEEeecc
Q 000654 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1371)
Q Consensus 317 s~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~ 347 (1371)
.+.+++.+..+|.++.+|. +|+++..++...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 3567778888999999999 999998876653
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=89.01 E-value=37 Score=39.57 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=26.2
Q ss_pred eeeccCCCCcEEEEEEEeecCCCcEEEEEEC-CCcEEEEECC
Q 000654 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDIS 165 (1371)
Q Consensus 125 ~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~-Dg~I~vWd~~ 165 (1371)
+..+..+-.--+.++|+| |++.|+.+.. .+.|.-|++.
T Consensus 155 ~~l~~~~~~~~NGla~Sp---Dg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSP---DGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred EEeecCcEEecCceEECC---CCCEEEEEeCCCCeEEEEecC
Confidence 344444445567899999 9987777655 4777777765
No 378
>PHA02713 hypothetical protein; Provisional
Probab=89.00 E-value=19 Score=45.82 Aligned_cols=61 Identities=5% Similarity=0.026 Sum_probs=33.3
Q ss_pred CCCEEEEEeCC------CcEEEEEccC-CcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCC--eEEEEeC
Q 000654 267 CGSKLVSVSDD------RSARIWEVRA-EYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC--TCRVWGS 335 (1371)
Q Consensus 267 dg~~LaS~s~D------g~VriWdl~~-~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg--~I~VWd~ 335 (1371)
+++..+.|+.+ ..+..||..+ .+- ..+. .+.........+.+.+...++||.++ ++-.||.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W------~~~~--~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW------ELIT--TTESRLSALHTILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCe------eEcc--ccCcccccceeEEECCEEEEEeeecceeehhhcCc
Confidence 44555556543 2356788776 332 1111 22222233444555678888998888 5666666
No 379
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=88.43 E-value=66 Score=38.84 Aligned_cols=259 Identities=11% Similarity=0.059 Sum_probs=145.1
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEE-ECCCeEEEEEeccCCCCCCCCCCccceee
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNL 122 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~-~gd~sV~vwdl~~~~~~~~~~~~~~~v~~ 122 (1371)
..+.+++..+.+....+..+. ...++... +++. ...++ .+...+...+... .
T Consensus 11 ~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~-------~~g~---~~~v~~~~~~~~~~~~~~~-n-------------- 63 (381)
T COG3391 11 ADVSVINTGTNKVTAAISLGR--GPGGVAVN-------PDGT---QVYVANSGSNDVSVIDATS-N-------------- 63 (381)
T ss_pred CceEEEeecccEEEEEeecCC--CCceeEEc-------CccC---EEEEEeecCceeeeccccc-c--------------
Confidence 347777777766666655433 46677777 7762 23222 2233333333321 0
Q ss_pred eeeeeccCCCCcEEEEEEEeecCCCc-EEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeC
Q 000654 123 SLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1371)
Q Consensus 123 ~~~~~l~gh~~~I~~v~fsp~~~dg~-~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~ 201 (1371)
........-...-..+++++ .+. ..++...++.|.+.|..+.+......... ....+.+ ++++..++.+..
T Consensus 64 ~~~~~~~~g~~~p~~i~v~~---~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~---~~~~~~vYV~n~ 135 (381)
T COG3391 64 TVTQSLSVGGVYPAGVAVNP---AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAV---DPDGKYVYVANA 135 (381)
T ss_pred eeeeeccCCCccccceeeCC---CCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEE---CCCCCEEEEEec
Confidence 11111111113345677777 666 45555567899999977776666554333 2334444 667766666554
Q ss_pred ---CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEe-CC
Q 000654 202 ---YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DD 277 (1371)
Q Consensus 202 ---dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s-~D 277 (1371)
++.+.+.|.. +...+.....-..+ ..++++|++.++..+. .+
T Consensus 136 ~~~~~~vsvid~~---------------------------------t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 136 GNGNNTVSVIDAA---------------------------------TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred ccCCceEEEEeCC---------------------------------CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCC
Confidence 5777777766 34444443332234 8999999999665554 78
Q ss_pred CcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEEeCC---CeEEEEeC-CCcEEEE-EeeccCcC
Q 000654 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGS-DGKQLKM-IKEHIGRG 350 (1371)
Q Consensus 278 g~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sgs~D---g~I~VWd~-~g~~l~~-l~~h~~~~ 350 (1371)
+.|.+.|....... +... ....+-....+.+.++ +..+...... +.+.+.|. .+..... +..-.. .
T Consensus 182 ~~v~vi~~~~~~v~-----~~~~-~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~ 254 (381)
T COG3391 182 NTVSVIDTSGNSVV-----RGSV-GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-A 254 (381)
T ss_pred CeEEEEeCCCccee-----cccc-ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-C
Confidence 89999997664331 0000 0012222333455564 4544444332 58888888 4444433 222222 2
Q ss_pred EEEEEEcCCCCEEEEEEC-CCcEEEEEcC
Q 000654 351 IWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (1371)
Q Consensus 351 V~sl~~spdg~~L~Tgg~-Dg~I~lwdl~ 378 (1371)
-..+.++|+|.++..... .+.+.+.|..
T Consensus 255 ~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 255 PRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred CCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 457889999998777644 4778887774
No 380
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.91 E-value=22 Score=46.80 Aligned_cols=123 Identities=7% Similarity=-0.051 Sum_probs=74.7
Q ss_pred CCEEEEEEcCCCCEEE--EEeCCCcEEEEEccCCcccCCCCceeeec-eEeecCCccEEEEEEc---CCEEEEEeCCCeE
Q 000654 257 GSIFRIEWSSCGSKLV--SVSDDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT---DSFIITAGEDCTC 330 (1371)
Q Consensus 257 ~~I~~v~~spdg~~La--S~s~Dg~VriWdl~~~~~~~~~~~~~~~~-~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I 330 (1371)
-.|..+...+|+...+ ..+.+-.|..+|+..-.........+++. .+.........++.|. +...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3455566667765433 34445578889987643210000111110 0112222334566776 3567778889999
Q ss_pred EEEeCC--CcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC
Q 000654 331 RVWGSD--GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (1371)
Q Consensus 331 ~VWd~~--g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~ 381 (1371)
+|..+. ...+..+..-. .+++++|+|.|+.++.|-..|++.-|......
T Consensus 181 ~V~~~~~~~~~v~s~p~t~--~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei 231 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTN--SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI 231 (1405)
T ss_pred hhhhhhhhhhhhcccCccc--ceeeEEeccccceeeEecCCCeEEEeecccce
Confidence 998872 23333333222 48999999999999999999999998875443
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.88 E-value=74 Score=38.76 Aligned_cols=148 Identities=17% Similarity=0.134 Sum_probs=80.7
Q ss_pred EEEEeCCCCcccC---cEEEEEEEecCCCCCCCCEEEEEe--C----CcEEEEECCCCeEEEEEEeecCccEEEEEeecc
Q 000654 6 LSEWRLDVGQYLG---EISALCFVHLPSHLSSLPFLLAGS--G----SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFI 76 (1371)
Q Consensus 6 V~iWdl~~~~h~~---~Vtavafs~~pd~~~~~~llaaG~--d----g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~ 76 (1371)
-.+.|+......+ .+...+++ |+ ++++|.+. + ..|+++|+++|+.+...- ....-..+.|.
T Consensus 109 evllD~n~l~~~~~~~~~~~~~~S--pd----g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~-- 178 (414)
T PF02897_consen 109 EVLLDPNELAKDGGYVSLGGFSVS--PD----GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWS-- 178 (414)
T ss_dssp EEEEEGGGGSTTSS-EEEEEEEET--TT----SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEEC--
T ss_pred EEEEcchHhhccCceEEeeeeeEC--CC----CCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEe--
Confidence 4566766654333 23467788 98 88888764 2 469999999998765321 12122338898
Q ss_pred ccccCCCCcceeeEEEEEC-C----------CeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecC
Q 000654 77 NCTEGSVSTRVTFEVALFG-E----------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1371)
Q Consensus 77 ~~~~~pdg~~~~~~la~~g-d----------~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~ 145 (1371)
+|++ .++.+.- + ..|..|++.+.. . .-.++.......-+...+..++
T Consensus 179 -----~d~~---~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~--~---------~d~lvfe~~~~~~~~~~~~~s~--- 236 (414)
T PF02897_consen 179 -----DDGK---GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ--S---------EDELVFEEPDEPFWFVSVSRSK--- 236 (414)
T ss_dssp -----TTSS---EEEEEECSTTTSS-CCGCCEEEEEEETTS-G--G---------G-EEEEC-TTCTTSEEEEEE-T---
T ss_pred -----CCCC---EEEEEEeCcccccccCCCCcEEEEEECCCCh--H---------hCeeEEeecCCCcEEEEEEecC---
Confidence 8863 4444442 2 136666665432 0 0123333322222467888888
Q ss_pred CCcEEEEEEC-C---CcEEEEECCCC----eEEEEEecCCcceEEEEE
Q 000654 146 GNRSLAIGCS-D---NSIRVWDISNS----SIILEVHSPERCLLYSMK 185 (1371)
Q Consensus 146 dg~~Latgs~-D---g~I~vWd~~~~----~~~~~l~~~~~~~v~s~~ 185 (1371)
++++|+.... . ..+.+.|+..+ .....+........+.+.
T Consensus 237 d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 237 DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888765433 2 34777788764 234444444444444443
No 382
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.69 E-value=2.2 Score=52.15 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=60.4
Q ss_pred CcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcc
Q 000654 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 133 ~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~ 211 (1371)
-.|.-+.|+| .-+++|++..+|.|.+..+. .+.+.++..|......+++| .+||.+||.|-.||+|++.|..
T Consensus 21 ~~i~~~ewnP---~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W---~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNP---KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCW---RPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcC---ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeee---cCCCCEEEEEecCCeEEEEEcc
Confidence 4688899999 88999999999999998887 66677776555555556766 7889999999999999999998
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.10 E-value=2.3 Score=54.89 Aligned_cols=79 Identities=13% Similarity=0.073 Sum_probs=57.4
Q ss_pred CccEEEEEEcCCEEEEEeCCCeEEEEeCCCcEEE-EEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC-CCcccc
Q 000654 308 NARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLK-MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSL 385 (1371)
Q Consensus 308 ~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~~g~~l~-~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~-~~~~~l 385 (1371)
...+.+.+.-...++.|+..|.+...|.+|..-. .-..+.+.+|++++|+.+|.+++.|-.+|.|.+||... ..++.+
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 4455555555678899999999999998665221 11223334799999999999999999999999999953 444433
Q ss_pred c
Q 000654 386 E 386 (1371)
Q Consensus 386 ~ 386 (1371)
.
T Consensus 169 ~ 169 (1206)
T KOG2079|consen 169 T 169 (1206)
T ss_pred e
Confidence 3
No 384
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=87.07 E-value=1.6 Score=35.24 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=28.6
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 000654 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1371)
Q Consensus 350 ~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~ 380 (1371)
.|..++|+|...+||.+..||.|.+++++++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 5999999999999999999999999999654
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.72 E-value=61 Score=36.59 Aligned_cols=186 Identities=12% Similarity=0.055 Sum_probs=101.9
Q ss_pred cEEEEEEEeecCCCcEEEEEECCC--cEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcc
Q 000654 134 WVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 134 ~I~~v~fsp~~~dg~~Latgs~Dg--~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~ 211 (1371)
..-.+.|.. ++.++-+.+.-| .|+.+|+.+++...+..-+....--.+.++ ++.+..-.=.++...+||..
T Consensus 46 FTQGL~~~~---~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 46 FTQGLEFLD---DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp EEEEEEEEE---TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSEEEEEETT
T ss_pred cCccEEecC---CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCeEEEEccc
Confidence 456788866 888888877766 788999999998877766654444444442 12223333456778888877
Q ss_pred cCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 000654 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1371)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~ 291 (1371)
+.+.+.++. ..+.=+.++ .|++.|+.......++++|..+.+.
T Consensus 119 ---------------------------------tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~- 161 (264)
T PF05096_consen 119 ---------------------------------TLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE- 161 (264)
T ss_dssp ---------------------------------TTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE-
T ss_pred ---------------------------------cceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccce-
Confidence 444555443 223445555 4666677666667899999876544
Q ss_pred CCCCceeeeceEeec-CCccEEEEEEcC-CEEEEEeCCCeEEEEeC-CCcEEEEEeec--------------cCcCEEEE
Q 000654 292 DSDSIEEVGSSVLYG-HNARVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIKEH--------------IGRGIWRC 354 (1371)
Q Consensus 292 ~~~~~~~~~~~~~~g-h~~~I~~l~~s~-~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h--------------~~~~V~sl 354 (1371)
.+.+.. ...+ .-..+.-+-|.+ ...|=.-....|..-|. +|+.+..+... ...-...|
T Consensus 162 ----~~~i~V-~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGI 236 (264)
T PF05096_consen 162 ----VRTIQV-TDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGI 236 (264)
T ss_dssp ----EEEEE--EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEE
T ss_pred ----EEEEEE-EECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeE
Confidence 222221 1111 112344455543 33333444555666677 77766655310 12247899
Q ss_pred EEcCCCCEEEEEEC
Q 000654 355 LYDSLSSLLVTAGF 368 (1371)
Q Consensus 355 ~~spdg~~L~Tgg~ 368 (1371)
|++|+...|...|.
T Consensus 237 Ayd~~~~~l~vTGK 250 (264)
T PF05096_consen 237 AYDPETDRLFVTGK 250 (264)
T ss_dssp EEETTTTEEEEEET
T ss_pred eEeCCCCEEEEEeC
Confidence 99988775554443
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=86.26 E-value=33 Score=43.71 Aligned_cols=142 Identities=11% Similarity=0.018 Sum_probs=73.1
Q ss_pred CEEEEEe-C------CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-C------CeEEE
Q 000654 36 PFLLAGS-G------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E------KRVKL 101 (1371)
Q Consensus 36 ~llaaG~-d------g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-d------~sV~v 101 (1371)
.+++.|. . ..+..||..+++-.....-.....-+++++. .+ .+.+++| + .++-.
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-------~~-----~lYv~GG~~~~~~~l~~ve~ 353 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-------NG-----KLYVVGGYDSGSDRLSSVER 353 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-------CC-----EEEEEccccCCCcccceEEE
Confidence 4555554 3 5788999988754322222222245566665 33 5666666 4 34666
Q ss_pred EEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCc-----EEEEECCCCeEEEEEecC
Q 000654 102 FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS-----IRVWDISNSSIILEVHSP 176 (1371)
Q Consensus 102 wdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~-----I~vWd~~~~~~~~~l~~~ 176 (1371)
||..... +..+..+.......-...+ +|.+.|+||.||. +-.||..+.+.-......
T Consensus 354 YD~~~~~-------------W~~~a~M~~~R~~~~v~~l-----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~ 415 (571)
T KOG4441|consen 354 YDPRTNQ-------------WTPVAPMNTKRSDFGVAVL-----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML 415 (571)
T ss_pred ecCCCCc-------------eeccCCccCccccceeEEE-----CCEEEEEeccccccccccEEEecCCCCcccccCCCC
Confidence 7766533 3333443333222222222 6778889998864 667777665432221111
Q ss_pred CcceEEEEEeeccCCCCcEEEEEeCCC------eEEEEEcc
Q 000654 177 ERCLLYSMKLWGDNLEALRIASGTIYN------EIIVWKVD 211 (1371)
Q Consensus 177 ~~~~v~s~~~~~~s~d~~~Lasgs~dg------~I~vWd~~ 211 (1371)
..-....+. .-++.+.++|+.++ .+..||..
T Consensus 416 ~~r~~~gv~----~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 416 TRRSGHGVA----VLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred cceeeeEEE----EECCEEEEEcCcCCCccccceEEEEcCC
Confidence 111111111 12566777777543 45666665
No 387
>PHA02713 hypothetical protein; Provisional
Probab=85.97 E-value=34 Score=43.56 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=17.5
Q ss_pred CCCEEEEEeCCC--cEEEEEccCCcc
Q 000654 267 CGSKLVSVSDDR--SARIWEVRAEYW 290 (1371)
Q Consensus 267 dg~~LaS~s~Dg--~VriWdl~~~~~ 290 (1371)
+++..+.|+.|+ ++-.||+.+.+-
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccc
Confidence 677788888888 677777776543
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=85.51 E-value=93 Score=37.56 Aligned_cols=237 Identities=14% Similarity=0.149 Sum_probs=93.9
Q ss_pred cEEEEECCC-----CeEEEEEEeec-CccEEEEEeeccccccCC--CCcceeeEEEEEC--CCeEEEEEeccCCCCCCCC
Q 000654 45 QVLLYDLEA-----GTLIRPFQVFH-GIRLHGISCNFINCTEGS--VSTRVTFEVALFG--EKRVKLFELNFELSPNSQY 114 (1371)
Q Consensus 45 ~I~Iwd~~s-----g~~l~~~~~~~-~~~I~~i~~s~~~~~~~p--dg~~~~~~la~~g--d~sV~vwdl~~~~~~~~~~ 114 (1371)
.|.+.|+.- +++++.+.... +...|..-|+ .|+.++ +.....+.|++-+ .+.|.|+|+.+.. .
T Consensus 38 ~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWN--aCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dP-----r 110 (461)
T PF05694_consen 38 YLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWN--ACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDP-----R 110 (461)
T ss_dssp EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES----GGSTT--TT--S-EEEEEBTTT--EEEEE--S-T-----T
T ss_pred eEEEEECCCCCCCcccEEEEEeCCCCCCccccccCc--ccccccCCCCcccCCcEEeeeeccCcEEEEECCCCC-----C
Confidence 455566542 57787776433 3467777776 233344 1111225666666 6889999987532 1
Q ss_pred CCccceeeeeeeeccC---C----CCcEEEEEEEeecCCCcEEEEEEC------CCcEEEEECCCCeEEEEEecCCcceE
Q 000654 115 QPETCVNLSLVQSLPR---L----SHWVFDVCFLKVCNGNRSLAIGCS------DNSIRVWDISNSSIILEVHSPERCLL 181 (1371)
Q Consensus 115 ~~~~~v~~~~~~~l~g---h----~~~I~~v~fsp~~~dg~~Latgs~------Dg~I~vWd~~~~~~~~~l~~~~~~~v 181 (1371)
+| ++.+.+.. + -..-..+...| +|+.++++-. -|-+.+.|-++...............
T Consensus 111 ~P------~l~KvIe~~ev~~k~g~s~PHT~Hclp---~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~ 181 (461)
T PF05694_consen 111 KP------RLHKVIEPEEVFEKTGLSRPHTVHCLP---DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQP 181 (461)
T ss_dssp S-------EEEEEE-HHHHHHHH-EEEEEEEEE-S---S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT--
T ss_pred CC------ceEeeeCHHHHHhhcCCCCCceeeecC---CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCC
Confidence 22 12222211 1 01223344446 7877776532 24577888888877777766554444
Q ss_pred EEEEeeccCCCCcEEEEEe--------------------CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000654 182 YSMKLWGDNLEALRIASGT--------------------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1371)
Q Consensus 182 ~s~~~~~~s~d~~~Lasgs--------------------~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1371)
+...|+.. |..+.++|.. .-+.+.+||+.
T Consensus 182 ~gYDfw~q-pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~------------------------------ 230 (461)
T PF05694_consen 182 FGYDFWYQ-PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS------------------------------ 230 (461)
T ss_dssp ----EEEE-TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT------------------------------
T ss_pred CCCCeEEc-CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC------------------------------
Confidence 55444443 4455666543 12456666665
Q ss_pred cccceeeEEEEeccc--CCEEEEEEcCC--CCE-EEEEeCCCcEEEEEc-cCCcccCCCCceee---eceE-----eec-
Q 000654 242 QQHTAVNLFRLVGHE--GSIFRIEWSSC--GSK-LVSVSDDRSARIWEV-RAEYWKDSDSIEEV---GSSV-----LYG- 306 (1371)
Q Consensus 242 ~~~~~~~~~~l~gH~--~~I~~v~~spd--g~~-LaS~s~Dg~VriWdl-~~~~~~~~~~~~~~---~~~~-----~~g- 306 (1371)
+.+.++++.--+ .....|.|..+ ..+ ++.+--..+|..|-- ..+.-. .+.+ .+.. +..
T Consensus 231 ---~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~----a~kVi~ip~~~v~~~~lp~m 303 (461)
T PF05694_consen 231 ---TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA----AEKVIDIPAKKVEGWILPEM 303 (461)
T ss_dssp ---TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE----EEEEEEE--EE--SS---GG
T ss_pred ---CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee----eeEEEECCCcccCccccccc
Confidence 555666655322 34567777643 433 333434445544433 222211 1111 0000 000
Q ss_pred ------CCccEEEEEEc--CCEEE-EEeCCCeEEEEeC
Q 000654 307 ------HNARVWDCCLT--DSFII-TAGEDCTCRVWGS 335 (1371)
Q Consensus 307 ------h~~~I~~l~~s--~~~L~-Sgs~Dg~I~VWd~ 335 (1371)
-..-|+++..+ +++|. +.-.+|.+|.||+
T Consensus 304 l~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 304 LKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp GGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred ccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence 13457888877 56664 5668999999999
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.28 E-value=9.3 Score=46.04 Aligned_cols=145 Identities=8% Similarity=0.071 Sum_probs=89.3
Q ss_pred CEEEE-Ee-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcc--e--eeEEEEECCCeEEEEEeccCCC
Q 000654 36 PFLLA-GS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR--V--TFEVALFGEKRVKLFELNFELS 109 (1371)
Q Consensus 36 ~llaa-G~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~--~--~~~la~~gd~sV~vwdl~~~~~ 109 (1371)
.+|+. |. ...|+=.|++.|+++-+...+.+ |.-+.+. |+.+. + +..|+.-++++|.-||.+...
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t-------~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~- 415 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDIT-------PDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG- 415 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC--cceeecc-------CCcchhcccccccEEeecCCceEEecccccC-
Confidence 34444 33 36788889999999999987665 6777777 43211 1 245677778999999988543
Q ss_pred CCCCCCCccceeeeeeeeccCCC----CcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEE
Q 000654 110 PNSQYQPETCVNLSLVQSLPRLS----HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMK 185 (1371)
Q Consensus 110 ~~~~~~~~~~v~~~~~~~l~gh~----~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~ 185 (1371)
...+....+|. ....|.+-. ...+||+|+.+|.||+||- .+....+....-+..+..+.
T Consensus 416 ------------~~kl~~~q~kqy~~k~nFsc~aTT----~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVd 478 (644)
T KOG2395|consen 416 ------------KNKLAVVQSKQYSTKNNFSCFATT----ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVD 478 (644)
T ss_pred ------------cceeeeeeccccccccccceeeec----CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEE
Confidence 11111122221 123344333 3457999999999999997 45444443333344444444
Q ss_pred eeccCCCCcEEEEEeCCCeEEEEEcc
Q 000654 186 LWGDNLEALRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 186 ~~~~s~d~~~Lasgs~dg~I~vWd~~ 211 (1371)
. +.+|.+|++.+ +..+.+-+..
T Consensus 479 v---tadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 479 V---TADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred e---eccCcEEEEec-ccEEEEEEEe
Confidence 4 56787776655 6777777765
No 390
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=85.03 E-value=2.6 Score=45.58 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=66.3
Q ss_pred CCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeC-CCcEEEEE
Q 000654 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1371)
Q Consensus 268 g~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~-~g~~l~~l 343 (1371)
+..++.|+.+|.|.+|........ .. ....-...|-++-.. +.+..+++.||.||.|++ .++.+...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~----~d-----~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAH----SD-----RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred CceEEeecccceEEEecCCccchH----HH-----hhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 467889999999999988733220 01 111112223332222 358899999999999999 67777777
Q ss_pred eeccCcCEEEEEEcCCCCEEEEE--ECCCcEEEEEcC
Q 000654 344 KEHIGRGIWRCLYDSLSSLLVTA--GFDSAIKVHQFQ 378 (1371)
Q Consensus 344 ~~h~~~~V~sl~~spdg~~L~Tg--g~Dg~I~lwdl~ 378 (1371)
..|...++..+..+..+++|+.. +.|..++.|++.
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 77774456566555566666666 677777777773
No 391
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.72 E-value=16 Score=47.45 Aligned_cols=121 Identities=23% Similarity=0.282 Sum_probs=74.1
Q ss_pred CEEEEEeCCcEEEEECCCCeEEEE-EE--------------------eecCccEEEEEeeccccccCCCCcceeeEEEEE
Q 000654 36 PFLLAGSGSQVLLYDLEAGTLIRP-FQ--------------------VFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 36 ~llaaG~dg~I~Iwd~~sg~~l~~-~~--------------------~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
+-|+++.|+.+.+||-....++.. ++ ..-...|+.|.++ |+| .+++.+
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n-------~~g----~~lal~ 102 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLN-------PTG----SLLALV 102 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEEC-------CCC----CEEEEE
Confidence 566677788888888654322110 00 0112347777777 898 799999
Q ss_pred CCCeEEEEEeccCCCCCCCCCC-ccceeeeeee-----eccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCC
Q 000654 95 GEKRVKLFELNFELSPNSQYQP-ETCVNLSLVQ-----SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1371)
Q Consensus 95 gd~sV~vwdl~~~~~~~~~~~~-~~~v~~~~~~-----~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~ 167 (1371)
|...|.|..+-..-.....|.. ...+..+... ....+...|..+.|+|.+.++..|+.-.+|+++|+||+...
T Consensus 103 G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 103 GPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred cCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 9998888888532111111111 0111111111 11234568999999996556788888889999999999654
No 392
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=84.48 E-value=1.5e+02 Score=39.07 Aligned_cols=452 Identities=15% Similarity=0.111 Sum_probs=208.7
Q ss_pred EEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC------CeEEEEEEe-ecCccEEEEEeeccccccCCCCcceeeEEEE
Q 000654 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA------GTLIRPFQV-FHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1371)
Q Consensus 22 avafs~~pd~~~~~~llaaG~-dg~I~Iwd~~s------g~~l~~~~~-~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~ 93 (1371)
-+... |. +|.+...- +|.+++-.+.+ +..+.-+.. ++.-.|..++|... +.+. .+.+.
T Consensus 118 ~~~VD--p~----~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~rfdel~v~Di~fly~----~s~p----t~~vl 183 (1096)
T KOG1897|consen 118 ILLVD--PK----GRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVRFDELNVYDIKFLYG----CSDP----TLAVL 183 (1096)
T ss_pred EEEEC--CC----CcEEEEEeecCeEEEEEecccccccCcccccccccccCcceEEEEEEEcC----CCCC----ceEEE
Confidence 34455 66 66666655 68777777665 344443332 33446888888722 1222 23233
Q ss_pred EC---CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEE
Q 000654 94 FG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1371)
Q Consensus 94 ~g---d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~ 170 (1371)
.. ++.++.|+++... ..+.. ......+ .+... -+..-| .+.+..|+.|.. .|.--+-.+-..+
T Consensus 184 y~Ds~~~Hv~~yelnl~~---ke~~~-----~~w~~~v-~~~a~--~li~VP-~~~gGvlV~ge~--~I~Y~~~~~~~ai 249 (1096)
T KOG1897|consen 184 YKDSDGRHVKTYELNLRD---KEFVK-----GPWSNNV-DNGAS--MLIPVP-SPIGGVLVIGEE--FIVYMSGDNFVAI 249 (1096)
T ss_pred EEcCCCcEEEEEEeccch---hhccc-----ccccccc-ccCCc--eeeecC-CCCceEEEEeee--EEEEeeCCceeEe
Confidence 32 5789999887532 00000 0000001 11111 122222 114556665542 2222222111111
Q ss_pred EEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcc-cCCccccCCCCCCCCCCCCCCCcceeeecccccceeeE
Q 000654 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD-WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1371)
Q Consensus 171 ~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~-~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~ 249 (1371)
.-+............ -..++...+.|..+|.+...-+. .++... .....
T Consensus 250 ~p~~~~~~t~~~~~~---v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s---------------------------~~~lk 299 (1096)
T KOG1897|consen 250 APLTAEQSTIVCYGR---VDLQGSRYLLGDEDGMLFKLLLSHTGETVS---------------------------GLDLK 299 (1096)
T ss_pred cccccCCceEEEccc---ccCCccEEEEecCCCcEEEEEeeccccccc---------------------------ceEEE
Confidence 111111111111111 25667788888889988776554 111000 00111
Q ss_pred EEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc------CCEEEE
Q 000654 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT------DSFIIT 323 (1371)
Q Consensus 250 ~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s------~~~L~S 323 (1371)
....|-..-..++.+-++ ..|.+||.-|.-.+-.+.+.... +.-...+ .....-++|.+++.. ...++|
T Consensus 300 ve~lge~siassi~~L~n-g~lFvGS~~gdSqLi~L~~e~d~-gsy~~il---et~~NLgPI~Dm~Vvd~d~q~q~qivt 374 (1096)
T KOG1897|consen 300 VEYLGETSIASSINYLDN-GVLFVGSRFGDSQLIKLNTEPDV-GSYVVIL---ETFVNLGPIVDMCVVDLDRQGQGQIVT 374 (1096)
T ss_pred EEecCCcchhhhhhcccC-ceEEEeccCCceeeEEccccCCC-Cchhhhh---hhcccccceeeEEEEeccccCCceEEE
Confidence 223344444555555554 46778888777677776654321 1111111 112233578777764 256777
Q ss_pred Ee---CCCeEEEEeC--CCcEEE--EEeeccCcCEEEEE--EcCCC-CEEEEEECCCcEEEEEcCCCCcccccCCCcccc
Q 000654 324 AG---EDCTCRVWGS--DGKQLK--MIKEHIGRGIWRCL--YDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKE 393 (1371)
Q Consensus 324 gs---~Dg~I~VWd~--~g~~l~--~l~~h~~~~V~sl~--~spdg-~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~ 393 (1371)
++ .||++|+... .-..+. .+.+-. ++|.+. ++++- .+|+. +.-+.-++..+.++ +..-+. .+
T Consensus 375 CsGa~kdgSLRiiRngi~I~e~A~i~l~Gik--g~w~lk~~v~~~~d~ylvl-sf~~eTrvl~i~~e-~ee~~~----~g 446 (1096)
T KOG1897|consen 375 CSGAFKDGSLRIIRNGIGIDELASIDLPGIK--GMWSLKSMVDENYDNYLVL-SFISETRVLNISEE-VEETED----PG 446 (1096)
T ss_pred EeCCCCCCcEEEEecccccceeeEeecCCcc--ceeEeeccccccCCcEEEE-EeccceEEEEEccc-eEEecc----cc
Confidence 64 6899999886 222333 344533 589988 54432 24443 34445566666543 111110 01
Q ss_pred ccCCcc-EEEeeecCC------cc---------ceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCCceeEE
Q 000654 394 FNGRTE-IFSIKIPNF------SE---------QIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (1371)
Q Consensus 394 ~~~~~~-i~s~~~~~~------~~---------~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~ 457 (1371)
|..+.+ +|....... .+ ....|....+.....++....+.+++++.+.++...+.+.. ..+
T Consensus 447 f~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~---l~e 523 (1096)
T KOG1897|consen 447 FSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG---LRE 523 (1096)
T ss_pred ccccCceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccc---eee
Confidence 111111 111110000 11 22223222222223333333355555555655544443333 223
Q ss_pred eEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcE
Q 000654 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRF 537 (1371)
Q Consensus 458 i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~ 537 (1371)
+.+..-..++.|+|+.+.. -.....+++++|.-+..+.+.-........ ....+... .-+++++ +.++..+..|
T Consensus 524 ~~~~~~e~evaCLDisp~~--d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~-~~~~l~~~-~iPRSIl--~~~~e~d~~y 597 (1096)
T KOG1897|consen 524 VSHKEFEYEVACLDISPLG--DAPNKSRLLAVGLWSDISMILTFLPDLILI-THEQLSGE-IIPRSIL--LTTFEGDIHY 597 (1096)
T ss_pred eeeheecceeEEEecccCC--CCCCcceEEEEEeecceEEEEEECCCccee-eeeccCCC-ccchhee--eEEeeccceE
Confidence 3344446789999997642 001223589998877665554432221110 00111111 1223333 3455666889
Q ss_pred EEEEcCCCcEEEEeCC
Q 000654 538 IFTADPKGRLKLWQLC 553 (1371)
Q Consensus 538 L~s~s~dg~I~lWdi~ 553 (1371)
|.++..||.+.-+-+.
T Consensus 598 LlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 598 LLVALGDGALLYFVLD 613 (1096)
T ss_pred EEEEcCCceEEEEEEE
Confidence 9999999998766544
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=82.80 E-value=71 Score=39.62 Aligned_cols=122 Identities=14% Similarity=0.225 Sum_probs=67.0
Q ss_pred CCcEEEEEEEeecCC-CcEEEEEECCCcEEEEECC-----CCeEEEEEecCCcc----eEEEEEeeccCCCCcEEEEEeC
Q 000654 132 SHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDIS-----NSSIILEVHSPERC----LLYSMKLWGDNLEALRIASGTI 201 (1371)
Q Consensus 132 ~~~I~~v~fsp~~~d-g~~Latgs~Dg~I~vWd~~-----~~~~~~~l~~~~~~----~v~s~~~~~~s~d~~~Lasgs~ 201 (1371)
-..|..+.|.|.... -..|......+.|.+|-+. ..+.+..-.+..+. ......| .|....|+.-+.
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVW---HPk~~iL~VLT~ 132 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVW---HPKKAILTVLTA 132 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccc---cCCCceEEEEec
Confidence 356999999984322 2244445567889999885 22222221111110 0011112 455666666555
Q ss_pred CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeC-CCcE
Q 000654 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSA 280 (1371)
Q Consensus 202 dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~-Dg~V 280 (1371)
...-.++++... ..+....+ .-.+-|.|..|.+||++|+.+-. .=.-
T Consensus 133 ~dvSV~~sV~~d-------------------------------~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHS 180 (671)
T PF15390_consen 133 RDVSVLPSVHCD-------------------------------SSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHS 180 (671)
T ss_pred CceeEeeeeeeC-------------------------------CceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEE
Confidence 544455555510 11222233 45688999999999998766533 3356
Q ss_pred EEEEccCC
Q 000654 281 RIWEVRAE 288 (1371)
Q Consensus 281 riWdl~~~ 288 (1371)
++||-...
T Consensus 181 yiWd~~qK 188 (671)
T PF15390_consen 181 YIWDSAQK 188 (671)
T ss_pred EEecCchh
Confidence 78886554
No 394
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=82.01 E-value=2e+02 Score=38.78 Aligned_cols=191 Identities=15% Similarity=0.111 Sum_probs=102.5
Q ss_pred cEEEEECCCCeEEEEEecCCcceEEEEEeecc------CCCCcEEEEEeC---------CCeEEEEEcccCCccccCCCC
Q 000654 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGD------NLEALRIASGTI---------YNEIIVWKVDWEHVAPLLNSP 222 (1371)
Q Consensus 158 ~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~------s~d~~~Lasgs~---------dg~I~vWd~~~~~~~~~~~~~ 222 (1371)
.|.+.+..+++.+.++.-.....+.++++... .....+|++|+. -|.+.|+|+-. ..|....|
T Consensus 1005 ~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIe--VVPepgkP 1082 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIE--VVPEPGKP 1082 (1366)
T ss_pred eeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEE--ecCCCCCC
Confidence 45565666666555555444444555444321 112357888763 37888888751 11111100
Q ss_pred CCCCCCCCCCCcceeeecccccceeeEEE--EecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeee
Q 000654 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFR--LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (1371)
Q Consensus 223 ~~~s~~~~~~~~~~i~i~~~~~~~~~~~~--l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~ 300 (1371)
. +...+.. ...-.++|..++ .-+|.++.+-+. .|.+|++..... +- +
T Consensus 1083 ~---------------------t~~KlKel~~eE~KGtVsavc-eV~G~l~~~~Gq--KI~v~~l~r~~~-----li--g 1131 (1366)
T KOG1896|consen 1083 F---------------------TKNKLKELYIEEQKGTVSAVC-EVRGHLLSSQGQ--KIIVRKLDRDSE-----LI--G 1131 (1366)
T ss_pred c---------------------ccceeeeeehhhcccceEEEE-EeccEEEEccCc--EEEEEEeccCCc-----ce--e
Confidence 0 1111111 123456666554 234544444333 799999954332 11 1
Q ss_pred ceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeCC--CcEEEEEe-eccCcCEEEEEEcCCCC--EEEEEECCCcEEEE
Q 000654 301 SSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD--GKQLKMIK-EHIGRGIWRCLYDSLSS--LLVTAGFDSAIKVH 375 (1371)
Q Consensus 301 ~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~~--g~~l~~l~-~h~~~~V~sl~~spdg~--~L~Tgg~Dg~I~lw 375 (1371)
..+..-.-.+.++..-.++|+.|.--..|.+.... ...+..+. ......+.++.|--||. .++.+..|+.|+++
T Consensus 1132 -VaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1132 -VAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred -eEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
Confidence 13333333344444446788888877777776663 33333332 22223588888877766 67888899999999
Q ss_pred EcCCCCc
Q 000654 376 QFQAFLP 382 (1371)
Q Consensus 376 dl~~~~~ 382 (1371)
-..-..+
T Consensus 1211 ~Y~Pe~~ 1217 (1366)
T KOG1896|consen 1211 MYAPENI 1217 (1366)
T ss_pred EeCCCCc
Confidence 8754333
No 395
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.17 E-value=4.4 Score=52.59 Aligned_cols=99 Identities=16% Similarity=0.274 Sum_probs=66.1
Q ss_pred EEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCe
Q 000654 90 EVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1371)
Q Consensus 90 ~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~ 168 (1371)
.++++. .|.+...|+... +.+...-..-.++|.+++|+. +|..++.|-.+|.|.+||..+++
T Consensus 101 ~ivi~Ts~ghvl~~d~~~n--------------L~~~~~ne~v~~~Vtsvafn~---dg~~l~~G~~~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGN--------------LGPLHQNERVQGPVTSVAFNQ---DGSLLLAGLGDGHVTVWDMHRAK 163 (1206)
T ss_pred eEEEEcCchhhhhhhhhcc--------------cchhhcCCccCCcceeeEecC---CCceeccccCCCcEEEEEccCCc
Confidence 344444 577887777631 122222223457999999998 99999999999999999999988
Q ss_pred EEEEEecC---CcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcc
Q 000654 169 IILEVHSP---ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 169 ~~~~l~~~---~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~ 211 (1371)
.++.+..+ +..++.... ..++..++++..-|. +|.+.
T Consensus 164 ~l~~i~e~~ap~t~vi~v~~----t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 164 ILKVITEHGAPVTGVIFVGR----TSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceeeeeecCCccceEEEEEE----eCCCcEEEEccCCCc--eEEEE
Confidence 87766533 333333332 233447888877776 67655
No 396
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=81.15 E-value=1.1e+02 Score=37.50 Aligned_cols=114 Identities=12% Similarity=0.099 Sum_probs=60.3
Q ss_pred cEEEEEeeccccccCCCCcceeeEEEEECC-CeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecC
Q 000654 67 RLHGISCNFINCTEGSVSTRVTFEVALFGE-KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1371)
Q Consensus 67 ~I~~i~~s~~~~~~~pdg~~~~~~la~~gd-~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~ 145 (1371)
.+..-+|+ |++....++....+. ..+.++++..+. ...+....++. ..-+|+|
T Consensus 194 ~~~~p~ws-------~~~~~~~y~~f~~~~~~~i~~~~l~~g~-------------~~~i~~~~g~~---~~P~fsp--- 247 (425)
T COG0823 194 LILTPAWS-------PDGKKLAYVSFELGGCPRIYYLDLNTGK-------------RPVILNFNGNN---GAPAFSP--- 247 (425)
T ss_pred ceeccccC-------cCCCceEEEEEecCCCceEEEEeccCCc-------------cceeeccCCcc---CCccCCC---
Confidence 45555677 777421111111223 468888988654 22333344443 3567889
Q ss_pred CCcEEEEE-ECCCc--EEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEE-eCCCeEEEEEcc
Q 000654 146 GNRSLAIG-CSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVD 211 (1371)
Q Consensus 146 dg~~Latg-s~Dg~--I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasg-s~dg~I~vWd~~ 211 (1371)
||+.|+-. ..|+. |.+.|+..+... ++....+. ...-.+ +|||..++-. +..|.-.||-+.
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi-~~~Ps~---spdG~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGI-NTSPSW---SPDGSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCcc-ccCccC---CCCCCEEEEEeCCCCCcceEEEC
Confidence 88877554 44555 555677666533 33322211 112222 7888877654 445555555544
No 397
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.03 E-value=0.26 Score=61.67 Aligned_cols=294 Identities=13% Similarity=0.148 Sum_probs=140.6
Q ss_pred CCcEEEEECCCCeEE-EEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCcccee
Q 000654 43 GSQVLLYDLEAGTLI-RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (1371)
Q Consensus 43 dg~I~Iwd~~sg~~l-~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~ 121 (1371)
.+.+++-|..+.-.. .-++++.+ .|-.|+|-- ..+|.+ . ---|.+.||+++.-. ...+|..
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G-~v~dl~fah---~~~pk~----~----~~vg~lfVy~vd~l~---G~iq~~l--- 171 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPG-GVGDLQFAH---TKCPKG----R----RLVGELFVYDVDVLQ---GEIQPQL--- 171 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCC-Ccccccccc---cCChHH----H----HHhhhhheeehHhhc---cccccce---
Confidence 466777776553211 11234445 566676651 122333 1 112788999987522 1111111
Q ss_pred eeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEE--------EEeeccCCCC
Q 000654 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYS--------MKLWGDNLEA 193 (1371)
Q Consensus 122 ~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s--------~~~~~~s~d~ 193 (1371)
.+.........+.-|.|.|+..+.-++..+-.++.|++....+... ..+.+|... ... +.+...+|||
T Consensus 172 --~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~-~~d~a~~~~g~~~l~~lSpDG 247 (1283)
T KOG1916|consen 172 --EVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQR-VTDMAFFAEGVLKLASLSPDG 247 (1283)
T ss_pred --EEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCC-cccHHHHhhchhhheeeCCCC
Confidence 1122222223344455555433667777777888888866543211 111111110 000 0111238999
Q ss_pred cEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEE
Q 000654 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1371)
Q Consensus 194 ~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS 273 (1371)
..++++..||.++.|.+.-. +. ...+.+..|........+.-+ .|...+.-+... --.++++
T Consensus 248 tv~a~a~~dG~v~f~Qiyi~---g~-------------~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~-~w~~~It 309 (1283)
T KOG1916|consen 248 TVFAWAISDGSVGFYQIYIT---GK-------------IVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIG-KWVLRIT 309 (1283)
T ss_pred cEEEEeecCCccceeeeeee---cc-------------ccHhhhhccCCCCCCCceeee-eccccccCCccc-eeEEEEe
Confidence 99999999999999987610 00 011112222221111111111 222222111110 0124555
Q ss_pred Ee-CCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc---CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccC
Q 000654 274 VS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG 348 (1371)
Q Consensus 274 ~s-~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s---~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~ 348 (1371)
++ ..+.+++|.-...++.....++.+. ....|...|..+... -..+++-+.+++|.+|.- .-........|.+
T Consensus 310 ttd~nre~k~w~~a~w~Cll~~~~d~v~--iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~~~vs~~~~~ 387 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCLLDKLIDGVQ--IVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQPLVVSRPHDG 387 (1283)
T ss_pred cccCCcceeEeeccchhhhhhhcccceE--eecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhhhhhhhhhhc
Confidence 54 4667999998776663111122222 333666666554332 245667788899999975 3222223333443
Q ss_pred cCEEEEEE--cC---CCCEEEEEEC-CCcEEEEEcC
Q 000654 349 RGIWRCLY--DS---LSSLLVTAGF-DSAIKVHQFQ 378 (1371)
Q Consensus 349 ~~V~sl~~--sp---dg~~L~Tgg~-Dg~I~lwdl~ 378 (1371)
.+|.+--| +| +...+++|+. +..+++|-..
T Consensus 388 hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s~ 423 (1283)
T KOG1916|consen 388 HPVLSAIFVTSPERPDHIELITGGPLNRELKIWVSA 423 (1283)
T ss_pred ceeccccccccCCCccccccccCCcchhhhhhhhhc
Confidence 34555333 33 3335666654 5567777664
No 398
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=80.26 E-value=36 Score=43.30 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=69.0
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEecc-CCCC-C
Q 000654 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF-ELSP-N 111 (1371)
Q Consensus 35 ~~llaaG~-dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~-~~~~-~ 111 (1371)
++..++-+ ...+.|||...+.+..+....+...|..+.|... |||+ ..++++-.+.|.+|.-.. +..+ .
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst-----~d~q---siLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTST-----PDGQ---SILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeec-----CCCC---EEEEEEcCcEEEEEEccchhhhcCC
Confidence 34555544 4799999999888655544323458999999854 8885 677777799999986421 1000 1
Q ss_pred CCCCCccceeeeeeeeccCCC-CcEEEEEEEeecCCCcEEEEEECCCcEEEEEC
Q 000654 112 SQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (1371)
Q Consensus 112 ~~~~~~~~v~~~~~~~l~gh~-~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~ 164 (1371)
..+.+ .+.+. +..|+ .+|.+..|.+ +|.+++ |+ .+.+.|+|-
T Consensus 113 p~w~~-----i~~i~-i~~~T~h~Igds~Wl~---~G~LvV-~s-GNqlfv~dk 155 (631)
T PF12234_consen 113 PSWAP-----IRKID-ISSHTPHPIGDSIWLK---DGTLVV-GS-GNQLFVFDK 155 (631)
T ss_pred cccce-----eEEEE-eecCCCCCccceeEec---CCeEEE-Ee-CCEEEEECC
Confidence 11111 22222 23344 6899999998 776554 43 466878764
No 399
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=79.50 E-value=2.4e+02 Score=38.11 Aligned_cols=159 Identities=11% Similarity=0.142 Sum_probs=90.8
Q ss_pred CCCCEEEEEeC---------CCcEEEEEEcC-----CccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcE
Q 000654 482 GIDDWVALGDG---------KGNMTIVRVVG-----DVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRL 547 (1371)
Q Consensus 482 ~~~~lla~gs~---------dG~I~iwdi~~-----~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I 547 (1371)
....++++|+. .|.+.||++-. ++...+.++...+..+..+.+.. +-.-.| +|+++ ....|
T Consensus 1044 ~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsa---vceV~G-~l~~~-~GqKI 1118 (1366)
T KOG1896|consen 1044 GKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSA---VCEVRG-HLLSS-QGQKI 1118 (1366)
T ss_pred CCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEE---EEEecc-EEEEc-cCcEE
Confidence 34578888764 78899999743 32222223333333333333322 222344 44443 23468
Q ss_pred EEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCccccccccccccccccc
Q 000654 548 KLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSP 627 (1371)
Q Consensus 548 ~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p 627 (1371)
.+|+++.... +. +-.|. +..+--.+..--.++|..|+--..|.+..+... +.++..
T Consensus 1119 ~v~~l~r~~~-----------li-gVaFi---D~~~yv~s~~~vknlIl~gDV~ksisfl~fqee---------p~rlsL 1174 (1366)
T KOG1896|consen 1119 IVRKLDRDSE-----------LI-GVAFI---DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEE---------PYRLSL 1174 (1366)
T ss_pred EEEEeccCCc-----------ce-eeEEe---ccceeEEehhhhhhheehhhhhhceEEEEEccC---------ceEEEE
Confidence 8899853321 01 11121 222222333334789999999999999888763 223332
Q ss_pred ccccccccCCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEecCC
Q 000654 628 LNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDR 673 (1371)
Q Consensus 628 ~~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~~~ 673 (1371)
++.-. ..-.|+++.|.-.+.+ .+++.+.+||.|.++-..+..
T Consensus 1175 ~srd~---~~l~v~s~EFLVdg~~-L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1175 LSRDF---EPLNVYSTEFLVDGSN-LSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred eecCC---chhhceeeeeEEcCCe-eEEEEEcCCCcEEEEEeCCCC
Confidence 32111 0135889999865555 789999999999999988753
No 400
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=79.50 E-value=24 Score=45.20 Aligned_cols=123 Identities=10% Similarity=0.072 Sum_probs=76.4
Q ss_pred CCcEEEEEcCCCcEEEEeCCCCCC----c--cccccCccceeeeeeeeecccCCcEEEEEee--cCCCEEEEecCCCeEE
Q 000654 534 GHRFIFTADPKGRLKLWQLCDPFS----S--VCYESSKTNNVFLVAEFSSCFGARIMCLDAS--FEDEVLFCGDLRGNLV 605 (1371)
Q Consensus 534 d~~~L~s~s~dg~I~lWdi~~~~~----~--~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~s--pdg~lLatGs~dGtI~ 605 (1371)
+...|+.+..||.|.+|.++.... . .......+ ......|...-...+..+|+. ...++||+++....|.
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r--~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSR--LKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhcccccccccc--ccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEE
Confidence 456788999999999997642110 0 00000000 111112333446678999998 8899999999999999
Q ss_pred EEEcCcccccccccccccccccccccccccCCcCeEEEEEeecCCCc---eEEEEEcCCCcEEEEEEe
Q 000654 606 LFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQ---TEIRSTGGDGCICYLEYD 670 (1371)
Q Consensus 606 Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~---~~L~T~g~DG~v~iw~l~ 670 (1371)
||-..... .+....... .|. ..|=+|+|.....+. ..|+.++-.|.+-+|++.
T Consensus 191 VFaf~l~~---------~r~~~~~s~--~~~-hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 191 VFAFALVD---------ERFYHVPSH--QHS-HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEEeccc---------ccccccccc--ccc-cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 88766420 011111000 122 568899999765433 378889999999998884
No 401
>PRK13684 Ycf48-like protein; Provisional
Probab=79.31 E-value=83 Score=37.22 Aligned_cols=157 Identities=10% Similarity=-0.037 Sum_probs=85.6
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECC
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd 96 (1371)
.+.+.++.+. |+ +.++++|..|.+..-.-..++.-..+.......++++.+. +++ .++++...
T Consensus 172 ~g~~~~i~~~--~~----g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~-------~~g----~~~~vg~~ 234 (334)
T PRK13684 172 AGVVRNLRRS--PD----GKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQ-------PDG----NLWMLARG 234 (334)
T ss_pred cceEEEEEEC--CC----CeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEc-------CCC----CEEEEecC
Confidence 4668899998 88 7888888877654321122222222233334578999988 776 56666666
Q ss_pred CeEEEEEeccCCCCCCCCCCccceeeeeeeec-cCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEec
Q 000654 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1371)
Q Consensus 97 ~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l-~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~ 175 (1371)
|.+++=.-+.+. .++..... ..-...+.++.+.| ++..++ ++.+|.+. .....++.-.....
T Consensus 235 G~~~~~s~d~G~------------sW~~~~~~~~~~~~~l~~v~~~~---~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~ 297 (334)
T PRK13684 235 GQIRFNDPDDLE------------SWSKPIIPEITNGYGYLDLAYRT---PGEIWA-GGGNGTLL-VSKDGGKTWEKDPV 297 (334)
T ss_pred CEEEEccCCCCC------------ccccccCCccccccceeeEEEcC---CCCEEE-EcCCCeEE-EeCCCCCCCeECCc
Confidence 766422122111 12211111 11123578888987 766554 55677554 45555554444332
Q ss_pred --CCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcc
Q 000654 176 --PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 176 --~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~ 211 (1371)
......+.+.+. .++ ..+..+..|.|..|+-.
T Consensus 298 ~~~~~~~~~~~~~~---~~~-~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 298 GEEVPSNFYKIVFL---DPE-KGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCCCCcceEEEEEe---CCC-ceEEECCCceEEEecCC
Confidence 122245566552 223 44555668888887643
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=78.48 E-value=1.9e+02 Score=36.20 Aligned_cols=163 Identities=11% Similarity=0.130 Sum_probs=85.8
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEe---CCcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEE
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~---dg~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~ 93 (1371)
..||..++|. .. ...+++.- +|.+++=| .+.+..|. .|+|+.|.+......| .++|+
T Consensus 19 iHPvhGlaWT--DG----kqVvLT~L~l~~gE~kfGd---s~viGqFE-----hV~GlsW~P~~~~~~p------aLLAV 78 (671)
T PF15390_consen 19 IHPVHGLAWT--DG----KQVVLTDLQLHNGEPKFGD---SKVIGQFE-----HVHGLSWAPPCTADTP------ALLAV 78 (671)
T ss_pred hccccceEec--CC----CEEEEEeeeeeCCccccCC---ccEeeccc-----eeeeeeecCcccCCCC------ceEEE
Confidence 3567788886 32 33444322 34444333 23344433 4999999955433333 68999
Q ss_pred ECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccC-CCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEE
Q 000654 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1371)
Q Consensus 94 ~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~g-h~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~ 172 (1371)
-..+.|.||.+........+ .-......+.. ..---..+-|+| ....|++-.....-.+.++......-+
T Consensus 79 QHkkhVtVWqL~~s~~e~~K------~l~sQtcEi~e~~pvLpQGCVWHP---k~~iL~VLT~~dvSV~~sV~~d~srVk 149 (671)
T PF15390_consen 79 QHKKHVTVWQLCPSTTERNK------LLMSQTCEIREPFPVLPQGCVWHP---KKAILTVLTARDVSVLPSVHCDSSRVK 149 (671)
T ss_pred eccceEEEEEeccCcccccc------ceeeeeeeccCCcccCCCcccccC---CCceEEEEecCceeEeeeeeeCCceEE
Confidence 99999999999743211111 00011111100 000123567888 777776655554445556543333222
Q ss_pred EecCCcceEEEEEeeccCCCCcEEEEE-eCCCeEEEEEcc
Q 000654 173 VHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVD 211 (1371)
Q Consensus 173 l~~~~~~~v~s~~~~~~s~d~~~Lasg-s~dg~I~vWd~~ 211 (1371)
..-.....+.+.+| ..||..|+.+ +..=.-++||-.
T Consensus 150 aDi~~~G~IhCACW---T~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 150 ADIKTSGLIHCACW---TKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeccCCceEEEEEe---cCcCCEEEEEeCCeEEEEEecCc
Confidence 23344456777776 5677766554 333345678754
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=77.89 E-value=84 Score=40.09 Aligned_cols=112 Identities=10% Similarity=0.169 Sum_probs=68.2
Q ss_pred CcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCC
Q 000654 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1371)
Q Consensus 147 g~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s 226 (1371)
++..++-+....+.|||...+....+-.-.....+..+.|.. .+++..+++-+..+.|.++.-....... ..
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWts-t~d~qsiLaVGf~~~v~l~~Q~R~dy~~--~~----- 112 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTS-TPDGQSILAVGFPHHVLLYTQLRYDYTN--KG----- 112 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeee-cCCCCEEEEEEcCcEEEEEEccchhhhc--CC-----
Confidence 343334444557999999988765444333444566666544 5788888888889999998653100000 00
Q ss_pred CCCCCCCcceeeecccccceeeE--EEEeccc-CCEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 000654 227 AHGSSSDFKCFKLQDQQHTAVNL--FRLVGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (1371)
Q Consensus 227 ~~~~~~~~~~i~i~~~~~~~~~~--~~l~gH~-~~I~~v~~spdg~~LaS~s~Dg~VriWdl 285 (1371)
....++ ..+..|+ .+|.+..|.++|.+++.++. .+.|+|-
T Consensus 113 -----------------p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~dk 155 (631)
T PF12234_consen 113 -----------------PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN--QLFVFDK 155 (631)
T ss_pred -----------------cccceeEEEEeecCCCCCccceeEecCCeEEEEeCC--EEEEECC
Confidence 011122 2234455 68999999999987766554 6777764
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=76.89 E-value=80 Score=40.32 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=85.2
Q ss_pred cEEEEeCCCCc--------ccCcEEEEEEEecCCCCCCCCEEEEEe-C------CcEEEEECCCCeEE--EEEEeecCcc
Q 000654 5 DLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-G------SQVLLYDLEAGTLI--RPFQVFHGIR 67 (1371)
Q Consensus 5 tV~iWdl~~~~--------h~~~Vtavafs~~pd~~~~~~llaaG~-d------g~I~Iwd~~sg~~l--~~~~~~~~~~ 67 (1371)
++..+|..+++ ....-.++++. .+ .+.++|. + .++..||..+.+-. ..+.... .
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~-----~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R--~ 372 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NG-----KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR--S 372 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEE--CC-----EEEEEccccCCCcccceEEEecCCCCceeccCCccCcc--c
Confidence 46677777664 22335666776 43 4555544 5 46888888776532 2222211 1
Q ss_pred EEEEEeeccccccCCCCcceeeEEEEEC-C-----CeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEE
Q 000654 68 LHGISCNFINCTEGSVSTRVTFEVALFG-E-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1371)
Q Consensus 68 I~~i~~s~~~~~~~pdg~~~~~~la~~g-d-----~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fs 141 (1371)
=++++.. +| .+.+++| + .++-.||..+.. +..+..+.......-.+.+
T Consensus 373 ~~~v~~l--------~g----~iYavGG~dg~~~l~svE~YDp~~~~-------------W~~va~m~~~r~~~gv~~~- 426 (571)
T KOG4441|consen 373 DFGVAVL--------DG----KLYAVGGFDGEKSLNSVECYDPVTNK-------------WTPVAPMLTRRSGHGVAVL- 426 (571)
T ss_pred cceeEEE--------CC----EEEEEeccccccccccEEEecCCCCc-------------ccccCCCCcceeeeEEEEE-
Confidence 2333333 33 5667766 3 457778877544 4444444332222222222
Q ss_pred eecCCCcEEEEEECCC------cEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCe-----EEEEEc
Q 000654 142 KVCNGNRSLAIGCSDN------SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE-----IIVWKV 210 (1371)
Q Consensus 142 p~~~dg~~Latgs~Dg------~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~-----I~vWd~ 210 (1371)
+|.+.++||.++ ++..||..+.+.........+-....++. .++.+.+.|+.|+. |-.+|.
T Consensus 427 ----~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~----~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 427 ----GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV----LNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred ----CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE----ECCEEEEECCccCCCccceEEEEcC
Confidence 677778887554 56788887766543322221111112221 25667777777662 555666
Q ss_pred c
Q 000654 211 D 211 (1371)
Q Consensus 211 ~ 211 (1371)
.
T Consensus 499 ~ 499 (571)
T KOG4441|consen 499 E 499 (571)
T ss_pred C
Confidence 5
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=75.74 E-value=1.6e+02 Score=34.15 Aligned_cols=284 Identities=12% Similarity=0.049 Sum_probs=123.0
Q ss_pred EeCCCCcccCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCC----eEEEEEEeec--CccEEEEEeeccccccCC
Q 000654 9 WRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----TLIRPFQVFH--GIRLHGISCNFINCTEGS 82 (1371)
Q Consensus 9 Wdl~~~~h~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg----~~l~~~~~~~--~~~I~~i~~s~~~~~~~p 82 (1371)
|......-..++..|+|. .+ .+-.++|..+.| +...+| +.+. ..... ......|.|. .
T Consensus 8 W~~v~l~t~~~l~dV~F~--d~----~~G~~VG~~g~i--l~T~DGG~tW~~~~-~~~~~~~~~~l~~I~f~-------~ 71 (302)
T PF14870_consen 8 WQQVSLPTDKPLLDVAFV--DP----NHGWAVGAYGTI--LKTTDGGKTWQPVS-LDLDNPFDYHLNSISFD-------G 71 (302)
T ss_dssp EEEEE-S-SS-EEEEEES--SS----S-EEEEETTTEE--EEESSTTSS-EE------S-----EEEEEEEE-------T
T ss_pred cEEeecCCCCceEEEEEe--cC----CEEEEEecCCEE--EEECCCCccccccc-cCCCccceeeEEEEEec-------C
Confidence 444444445689999998 44 577778887754 333332 2221 11111 2245667666 3
Q ss_pred CCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEE
Q 000654 83 VSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (1371)
Q Consensus 83 dg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vW 162 (1371)
+ ..++++..+ + |+...... ..++.+..-..-.+....+.... ++..++ ++..|.|..
T Consensus 72 ~-----~g~ivG~~g-~-ll~T~DgG-----------~tW~~v~l~~~lpgs~~~i~~l~---~~~~~l-~~~~G~iy~- 128 (302)
T PF14870_consen 72 N-----EGWIVGEPG-L-LLHTTDGG-----------KTWERVPLSSKLPGSPFGITALG---DGSAEL-AGDRGAIYR- 128 (302)
T ss_dssp T-----EEEEEEETT-E-EEEESSTT-----------SS-EE----TT-SS-EEEEEEEE---TTEEEE-EETT--EEE-
T ss_pred C-----ceEEEcCCc-e-EEEecCCC-----------CCcEEeecCCCCCCCeeEEEEcC---CCcEEE-EcCCCcEEE-
Confidence 2 344444444 3 33333211 12333322112223344454444 443333 344454433
Q ss_pred ECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccc
Q 000654 163 DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1371)
Q Consensus 163 d~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~ 242 (1371)
....|+.-..+.......+..+.. ++++.+++++..-+.+.-|+.-.
T Consensus 129 T~DgG~tW~~~~~~~~gs~~~~~r---~~dG~~vavs~~G~~~~s~~~G~------------------------------ 175 (302)
T PF14870_consen 129 TTDGGKTWQAVVSETSGSINDITR---SSDGRYVAVSSRGNFYSSWDPGQ------------------------------ 175 (302)
T ss_dssp ESSTTSSEEEEE-S----EEEEEE----TTS-EEEEETTSSEEEEE-TT-------------------------------
T ss_pred eCCCCCCeeEcccCCcceeEeEEE---CCCCcEEEEECcccEEEEecCCC------------------------------
Confidence 334444433333333334444443 67888888887666666787640
Q ss_pred ccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCcee-eeceEeecCCccEEEEEEc-CCE
Q 000654 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE-VGSSVLYGHNARVWDCCLT-DSF 320 (1371)
Q Consensus 243 ~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~-~~~~~~~gh~~~I~~l~~s-~~~ 320 (1371)
....+..+ .-...|..+.|.|++.+.+.+ ..+.|+.=+....... ..+ +. ....-.-.+.+++|. ++.
T Consensus 176 -~~w~~~~r--~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~----w~~~~~--~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 176 -TTWQPHNR--NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET----WSEPII--PIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp -SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE----E---B---TTSS--S-EEEEEESSSS-
T ss_pred -ccceEEcc--CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc----cccccC--CcccCceeeEEEEecCCCC
Confidence 01222221 245789999999998776644 7788887772221110 000 00 111122347889998 566
Q ss_pred EEEEeCCCeEEEEeCCCcEEEEEee--ccCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q 000654 321 IITAGEDCTCRVWGSDGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (1371)
Q Consensus 321 L~Sgs~Dg~I~VWd~~g~~l~~l~~--h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lw 375 (1371)
+..++..|++.+=.=.|+-=+..+. .....++.+.|.++.+ -...|.||.+.-|
T Consensus 246 ~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred EEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 6666677766442224554444432 1122488899875544 3445678877544
No 406
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=75.45 E-value=1.9 Score=54.37 Aligned_cols=123 Identities=13% Similarity=0.055 Sum_probs=73.7
Q ss_pred eccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECC--CCeEEE----EEecCCcceEEEEEeeccCCCCcEEEEEe
Q 000654 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS--NSSIIL----EVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1371)
Q Consensus 127 ~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~--~~~~~~----~l~~~~~~~v~s~~~~~~s~d~~~Lasgs 200 (1371)
.+++..+.|..+.|... +-..+. -.-|.+.|||+. .|+... +...+.+..+--+.+++.-++..++..+.
T Consensus 127 l~kgf~G~v~dl~fah~--~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHT--KCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL 202 (1283)
T ss_pred HHhcCCCCccccccccc--CChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc
Confidence 45677888889988541 222222 223567788874 454332 22333333333344445556667777788
Q ss_pred CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEE-----------EcCCCC
Q 000654 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE-----------WSSCGS 269 (1371)
Q Consensus 201 ~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~-----------~spdg~ 269 (1371)
.+++|++-.+... .. ..+.+|..++..++ .+|||.
T Consensus 203 ~~~~i~lL~~~ra-------------------------------~~---~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt 248 (1283)
T KOG1916|consen 203 KGGEIRLLNINRA-------------------------------LR---SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT 248 (1283)
T ss_pred CCCceeEeeechH-------------------------------HH---HHHHhcCCCcccHHHHhhchhhheeeCCCCc
Confidence 8888887665410 00 11223544444432 689999
Q ss_pred EEEEEeCCCcEEEEEccC
Q 000654 270 KLVSVSDDRSARIWEVRA 287 (1371)
Q Consensus 270 ~LaS~s~Dg~VriWdl~~ 287 (1371)
.++.+..||.+++|.+.-
T Consensus 249 v~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 249 VFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred EEEEeecCCccceeeeee
Confidence 999999999999998764
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.92 E-value=24 Score=46.50 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=39.2
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC
Q 000654 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD 318 (1371)
Q Consensus 255 H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~ 318 (1371)
-....++++|+|.|+.++.|-..|++.-|...-.... .+. .+ .. ....+|.+++|-.
T Consensus 197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip--~P-p~-~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIP--EP-PV-EENYRVLSVTWLS 253 (1405)
T ss_pred cccceeeEEeccccceeeEecCCCeEEEeecccceee---ccc--CC-Cc-CCCcceeEEEEec
Confidence 3467899999999999999999999999886653210 000 00 01 1157899999973
No 408
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.30 E-value=1.5e+02 Score=36.02 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=84.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-CCEEEEEeCCCeEEEEeC
Q 000654 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS 335 (1371)
Q Consensus 257 ~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-~~~L~Sgs~Dg~I~VWd~ 335 (1371)
+....+..++++.+++.+..-..++-||-....- +. ........+..+.+. +..++.++.+|.+..=+-
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W------~~----~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d 308 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW------QP----HNRASARRIQNMGWRADGGLWLLTRGGGLYVSKG 308 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcce------EE----ecCCCccceeeeeEcCCCCEEEEeCCceEEEecC
Confidence 4456677788887776665543344455332110 10 222334567788886 445555667777644333
Q ss_pred CCc-----EEEEEeec-cCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCc
Q 000654 336 DGK-----QLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (1371)
Q Consensus 336 ~g~-----~l~~l~~h-~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~ 409 (1371)
.++ ....+... ....+.++.|.+++.. +.+|.+|.+....-.++ -|....
T Consensus 309 ~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~D~G~-------------------tW~~~~---- 364 (398)
T PLN00033 309 TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRSTDGGK-------------------SWKRDK---- 364 (398)
T ss_pred CCCcccccceeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeCCCCc-------------------ceeEcc----
Confidence 443 22332222 2225889999877665 55567777666543322 111100
Q ss_pred cceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEE
Q 000654 410 EQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1371)
Q Consensus 410 ~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~ 445 (1371)
..+.-...++.+.|.++++.++.+.+|.|+++
T Consensus 365 ----~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 365 ----GADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ----ccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 00112245778888888899999999988754
No 409
>PRK13616 lipoprotein LpqB; Provisional
Probab=74.17 E-value=2.4e+02 Score=36.12 Aligned_cols=120 Identities=8% Similarity=0.039 Sum_probs=65.5
Q ss_pred ccEEEEEEc--CCEEEEEe------CCC--eEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCc-EEEEEc
Q 000654 309 ARVWDCCLT--DSFIITAG------EDC--TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA-IKVHQF 377 (1371)
Q Consensus 309 ~~I~~l~~s--~~~L~Sgs------~Dg--~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~-I~lwdl 377 (1371)
..+.+.+++ ++.++..- .|. .+.+++..+.......+ . ..+.-.|+|||.+|++...... +++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--H-SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--C-CCCCceECCCCCceEEEecCcceEEEecc
Confidence 356667776 44444332 233 45555654444222222 2 3778899999998888765323 333222
Q ss_pred CCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCCC
Q 000654 378 QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDS 452 (1371)
Q Consensus 378 ~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~~ 452 (1371)
. ...+++.+......... .....|..+.|+|||..++....|+++...+-....
T Consensus 427 ~-----------------~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 427 P-----------------ATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTED 480 (591)
T ss_pred C-----------------CCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCC
Confidence 1 12233322221111000 123469999999999877777678888765555333
No 410
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=73.88 E-value=2e+02 Score=34.37 Aligned_cols=30 Identities=20% Similarity=-0.042 Sum_probs=18.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 000654 261 RIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1371)
Q Consensus 261 ~v~~spdg~~LaS~s~Dg~VriWdl~~~~~ 290 (1371)
...++|+.+.++-....+.++--|+.+.+.
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 456678878776666667788888877654
No 411
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=73.54 E-value=84 Score=38.49 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=72.3
Q ss_pred cEEEEeCCCCc------ccCcEEEEEEEecCCCCCCCCEEEEEe--C--CcEEEEECCCCeEEEEEEeecCccEEEEEee
Q 000654 5 DLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS--G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1371)
Q Consensus 5 tV~iWdl~~~~------h~~~Vtavafs~~pd~~~~~~llaaG~--d--g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s 74 (1371)
.+.++|+.+++ ..+.-.+-+|+ || ++.|+-.. + ..|.++|+.++.. ..+....+.. ..=.|+
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fs--pD----G~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~-~~Ps~s 290 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGAPAFS--PD----GSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGIN-TSPSWS 290 (425)
T ss_pred eEEEEeccCCccceeeccCCccCCccCC--CC----CCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccc-cCccCC
Confidence 48889999887 34555678899 98 55555544 3 5788888877763 3344333311 133455
Q ss_pred ccccccCCCCcceeeEEEEEC--CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEE
Q 000654 75 FINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1371)
Q Consensus 75 ~~~~~~~pdg~~~~~~la~~g--d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Lat 152 (1371)
|||+ .++..+ .|.-.||-...+. . .....+..+-... .-.++| +|++|+.
T Consensus 291 -------pdG~----~ivf~Sdr~G~p~I~~~~~~g---~---------~~~riT~~~~~~~--~p~~Sp---dG~~i~~ 342 (425)
T COG0823 291 -------PDGS----KIVFTSDRGGRPQIYLYDLEG---S---------QVTRLTFSGGGNS--NPVWSP---DGDKIVF 342 (425)
T ss_pred -------CCCC----EEEEEeCCCCCcceEEECCCC---C---------ceeEeeccCCCCc--CccCCC---CCCEEEE
Confidence 9993 444443 4555666554322 0 0111122222222 566788 9999887
Q ss_pred EECC-Cc--EEEEECCCCe
Q 000654 153 GCSD-NS--IRVWDISNSS 168 (1371)
Q Consensus 153 gs~D-g~--I~vWd~~~~~ 168 (1371)
.+.. |. |.+.|+.++.
T Consensus 343 ~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EeccCCceeeEEeccCCCC
Confidence 7643 43 5566665554
No 412
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=72.35 E-value=2.4e+02 Score=34.45 Aligned_cols=154 Identities=13% Similarity=0.165 Sum_probs=86.7
Q ss_pred CCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEc---C-
Q 000654 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS---S- 266 (1371)
Q Consensus 191 ~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~s---p- 266 (1371)
.+...++.|+..|.++|+++..+...+ . ..+.. ..-..+|..|..- +
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~---------------------------~-~lllE-~~l~~PILqv~~G~F~s~ 85 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQP---------------------------E-DLLLE-TQLKDPILQVECGKFVSG 85 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCC---------------------------c-cEEEE-EecCCcEEEEEeccccCC
Confidence 356789999999999999986221111 0 11111 1234667666543 2
Q ss_pred -CCCEEEEEeCCCcEEEEEccCCccc-CCCCceeeeceEeecCCccE--EEEEEc-------CCEEEEEeCCCeEEEEeC
Q 000654 267 -CGSKLVSVSDDRSARIWEVRAEYWK-DSDSIEEVGSSVLYGHNARV--WDCCLT-------DSFIITAGEDCTCRVWGS 335 (1371)
Q Consensus 267 -dg~~LaS~s~Dg~VriWdl~~~~~~-~~~~~~~~~~~~~~gh~~~I--~~l~~s-------~~~L~Sgs~Dg~I~VWd~ 335 (1371)
+...||. =.-+.+.+|.+...... .....-.+ ...+.|.-.- +.++.- ..+|..=+.||.+.+|+-
T Consensus 86 ~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~L--~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feq 162 (418)
T PF14727_consen 86 SEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQL--ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQ 162 (418)
T ss_pred CCcceEEE-ecCCEEEEEEEEecCCCcccCcEEEE--EEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeC
Confidence 2223333 44567778877432210 00001111 1344443322 223221 257888899999999998
Q ss_pred CCcEEEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 336 DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 336 ~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
+.-....+-...- ----+.|.+....|+|++.+..+.-|..
T Consensus 163 e~~~f~~~lp~~l-lPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 163 ESFAFSRFLPDFL-LPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CcEEEEEEcCCCC-CCcCeEEeecCCEEEEecCceeEEEecH
Confidence 6544333222211 1234778888889999999999998886
No 413
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=71.93 E-value=69 Score=41.26 Aligned_cols=165 Identities=11% Similarity=0.136 Sum_probs=90.5
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEE------EEEe-----------e----cCccEEEEEeeccccccCCCCcceeeEEEE
Q 000654 35 LPFLLAGSGSQVLLYDLEAGTLIR------PFQV-----------F----HGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1371)
Q Consensus 35 ~~llaaG~dg~I~Iwd~~sg~~l~------~~~~-----------~----~~~~I~~i~~s~~~~~~~pdg~~~~~~la~ 93 (1371)
+.+++.+.++.|.||+...-..+. .+.. . ....|.-|.+. .=| +.+.++++
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~-------~lg-~~EVLl~c 120 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVG-------DLG-GEEVLLLC 120 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEec-------ccC-CeeEEEEE
Confidence 468888889999999985432211 1100 0 00123333332 111 12366777
Q ss_pred ECCCeEEEEEeccC-----CCCCCCCCCccceeeeeeeeccCCCCcEEEEEEE--eecCCCcEEEEEECCCcEEEEECCC
Q 000654 94 FGEKRVKLFELNFE-----LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL--KVCNGNRSLAIGCSDNSIRVWDISN 166 (1371)
Q Consensus 94 ~gd~sV~vwdl~~~-----~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fs--p~~~dg~~Latgs~Dg~I~vWd~~~ 166 (1371)
..||.|.+|..+.- ......-........++...++ -...+|++++. . ..++||+++....|.||-...
T Consensus 121 ~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~---~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 121 TDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK---KSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred ecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC---cceEEEEecCCceEEEEEEec
Confidence 77999999987521 0000000000001112222222 23478999998 5 667888888888888875543
Q ss_pred C--eEEEEEecCCcceEEEEEeeccCCCCc---EEEEEeCCCeEEEEEcc
Q 000654 167 S--SIILEVHSPERCLLYSMKLWGDNLEAL---RIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 167 ~--~~~~~l~~~~~~~v~s~~~~~~s~d~~---~Lasgs~dg~I~vWd~~ 211 (1371)
. +....-.......+-++.|.....++. .|++++..|.+.+|++.
T Consensus 197 ~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 197 VDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 2 111110112334466788877664433 88899999999999984
No 414
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.76 E-value=1.4e+02 Score=33.93 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=38.4
Q ss_pred EEEecCCCCCCCCEEEEEeC------CcEEEEECCCC-eEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC
Q 000654 24 CFVHLPSHLSSLPFLLAGSG------SQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1371)
Q Consensus 24 afs~~pd~~~~~~llaaG~d------g~I~Iwd~~sg-~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g 95 (1371)
.|| || +++|.+..+ |.|-|||...+ +.+.++..| +..-|.+.+. +|| +.+++..
T Consensus 120 vfs--~d----G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~-GiGpHev~lm-------~DG----rtlvvan 180 (366)
T COG3490 120 VFS--PD----GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTH-GIGPHEVTLM-------ADG----RTLVVAN 180 (366)
T ss_pred ccC--CC----CcEEEeecCCCCCCCceEEEEecccccceecccccC-CcCcceeEEe-------cCC----cEEEEeC
Confidence 478 88 889988662 78999998754 446666654 3467888888 888 5555543
No 415
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.73 E-value=1.7e+02 Score=32.19 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=59.0
Q ss_pred EEEEEEcCCCCEE-EEEeCCCcEEEEEc--cCCcccCCCCceeeeceEeecCCc-cEEEEEEcCCEEEEEeCCCeEEEEe
Q 000654 259 IFRIEWSSCGSKL-VSVSDDRSARIWEV--RAEYWKDSDSIEEVGSSVLYGHNA-RVWDCCLTDSFIITAGEDCTCRVWG 334 (1371)
Q Consensus 259 I~~v~~spdg~~L-aS~s~Dg~VriWdl--~~~~~~~~~~~~~~~~~~~~gh~~-~I~~l~~s~~~L~Sgs~Dg~I~VWd 334 (1371)
-..++|+.+.+.+ .+-+.+-+|.-||. .++.......+-.+....-..|.. .=.++.-.+++.++.-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 3568888777654 55667778877884 444331111111110000001110 0122222467788888889999999
Q ss_pred C-CCcEEEEEeeccCcCEEEEEEc
Q 000654 335 S-DGKQLKMIKEHIGRGIWRCLYD 357 (1371)
Q Consensus 335 ~-~g~~l~~l~~h~~~~V~sl~~s 357 (1371)
. +|+.+..++-... .|++++|-
T Consensus 240 p~tGK~L~eiklPt~-qitsccFg 262 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTP-QITSCCFG 262 (310)
T ss_pred CCCCcEEEEEEcCCC-ceEEEEec
Confidence 9 9999999988887 59999995
No 416
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=70.41 E-value=3.6e+02 Score=35.79 Aligned_cols=107 Identities=13% Similarity=0.224 Sum_probs=65.9
Q ss_pred CCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCcc
Q 000654 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1371)
Q Consensus 533 ~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~ 612 (1371)
-+|++|+.- ...|++++.....+ +.. .-.+...+..++..-.|+.+++|+--+++.+-.....
T Consensus 838 fngkllA~I--n~~vrLye~t~~~e-----------Lr~----e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 838 FNGKLLAGI--NQSVRLYEWTTERE-----------LRI----ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred hCCeEEEec--CcEEEEEEccccce-----------ehh----hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 356677654 45688888764321 111 1246677899999999999999999998876554432
Q ss_pred cccccccccccccccccccccccCCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEecC
Q 000654 613 LLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1371)
Q Consensus 613 ~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~~ 672 (1371)
. +....+ .+-.++ .-.|++.+.. +..++-+-.+|.+.+-..+..
T Consensus 901 e------g~f~ev-----ArD~~p-~Wmtaveil~----~d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 901 E------GNFEEV-----ARDYNP-NWMTAVEILD----DDTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred C------CceEEe-----ehhhCc-cceeeEEEec----CceEEeecccccEEEEEecCC
Confidence 1 000111 111233 4577787772 355666777888888776643
No 417
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=70.19 E-value=2.3e+02 Score=33.43 Aligned_cols=70 Identities=9% Similarity=-0.016 Sum_probs=41.0
Q ss_pred EeecCCccEEEEEEc---------CCEEEEEeCCCeEEEEeC-CCcEEE---EE-eeccCcCEEEEEEcCCCCEEEEEEC
Q 000654 303 VLYGHNARVWDCCLT---------DSFIITAGEDCTCRVWGS-DGKQLK---MI-KEHIGRGIWRCLYDSLSSLLVTAGF 368 (1371)
Q Consensus 303 ~~~gh~~~I~~l~~s---------~~~L~Sgs~Dg~I~VWd~-~g~~l~---~l-~~h~~~~V~sl~~spdg~~L~Tgg~ 368 (1371)
....+...+..+.|. +.+|+..-..+.|....+ .+..+. .+ ..... .+..+++.|||.+.++-..
T Consensus 247 ~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-r~~~v~~~pDG~Lyv~~d~ 325 (331)
T PF07995_consen 247 FAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGG-RPRDVAQGPDGALYVSDDS 325 (331)
T ss_dssp EEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS--EEEEEEETTSEEEEEE-T
T ss_pred eeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCC-CceEEEEcCCCeEEEEECC
Confidence 444555667777764 235555555566766666 332222 12 22333 4899999999998888878
Q ss_pred CCcEE
Q 000654 369 DSAIK 373 (1371)
Q Consensus 369 Dg~I~ 373 (1371)
+|.|.
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 88763
No 418
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.52 E-value=2.2e+02 Score=32.58 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=76.8
Q ss_pred EecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-C-CEEEEEeCCCe
Q 000654 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-D-SFIITAGEDCT 329 (1371)
Q Consensus 252 l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-~-~~L~Sgs~Dg~ 329 (1371)
+.|-+..+.++.|+|+.+.|.+......-.+|=-..++. ++.+ .+.+ -...-.+.+. + +++++--.++.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-----irti---PL~g-~~DpE~Ieyig~n~fvi~dER~~~ 151 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-----IRTI---PLTG-FSDPETIEYIGGNQFVIVDERDRA 151 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCce-----EEEe---cccc-cCChhHeEEecCCEEEEEehhcce
Confidence 445566699999999999999988888877776666554 3322 2222 1122345554 3 44455556788
Q ss_pred EEEEeC--CCcEEE------EE--eeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 330 CRVWGS--DGKQLK------MI--KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 330 I~VWd~--~g~~l~------~l--~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
+.++.+ ++..+. .+ ..+.+++.-.++|+|....|..+-.-.=+.|+..+
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 888877 222211 11 12324478999999999988888887788888875
No 419
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.93 E-value=1e+02 Score=33.38 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=56.1
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeee
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~ 123 (1371)
..|++||+.+|+.+.+.+.... .+++=-+. ...|. ....++.++....+|.++ ++
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~-~~FgEGit-----~~gd~----~y~LTw~egvaf~~d~~t---------------~~ 122 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPD-TVFGEGIT-----KLGDY----FYQLTWKEGVAFKYDADT---------------LE 122 (262)
T ss_pred ceeEEEeccCceEEEEeecCCc-ccccccee-----eccce----EEEEEeccceeEEEChHH---------------hh
Confidence 7899999999998877664321 33322222 00332 677888899999999875 33
Q ss_pred eeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE
Q 000654 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1371)
Q Consensus 124 ~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~ 169 (1371)
.+..+. ..+.=+.++. |+..|..+....+++.-|.++...
T Consensus 123 ~lg~~~-y~GeGWgLt~-----d~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 123 ELGRFS-YEGEGWGLTS-----DDKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred hhcccc-cCCcceeeec-----CCcceEeeCCceEEEecCHHHhhh
Confidence 333332 2233344543 555566665555666666655433
No 420
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=67.34 E-value=2.1e+02 Score=38.14 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=66.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEE--Ee
Q 000654 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV--WG 334 (1371)
Q Consensus 257 ~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~V--Wd 334 (1371)
+.|.+| .|-..++.+| ..+.+++||+...+. ++.- .+.--...|..+++....++.|...-.+.. |+
T Consensus 936 ~~v~Ai--~~f~~~~Lag-vG~~l~~YdlG~K~l-----LRk~---e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 936 GPVGAI--CPFQGRVLAG-VGRFLRLYDLGKKKL-----LRKC---ELKFIPNRISSIQTYGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred ccceEE--eccCCEEEEe-cccEEEEeeCChHHH-----Hhhh---hhccCceEEEEEeecceEEEEeeccceEEEEEEe
Confidence 444444 4544454443 334899999988665 2211 112236678899988888888866555554 55
Q ss_pred CCCcEEEEEeec-cCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 335 SDGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 335 ~~g~~l~~l~~h-~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
..++.+..+... -.+.|+++.+- |-..+|.+..=|.+.+-.+.
T Consensus 1005 ~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred cCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 566666666543 23357777665 33456766666777776664
No 421
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.11 E-value=82 Score=42.65 Aligned_cols=164 Identities=11% Similarity=0.164 Sum_probs=85.1
Q ss_pred CCCcEEEEEEcCCccccceeeeeeeccCcccceeEEEEee------cCCCcEEEEEcCCCcEEEEeCCCCCCccccccCc
Q 000654 492 GKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCK------SLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSK 565 (1371)
Q Consensus 492 ~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~------s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~ 565 (1371)
.|..+.+|++.++...+- ..+-.+.++.+-+.. -+.=++|+.-..--.|.++-+..........
T Consensus 97 iDn~L~lWny~~~~e~~~-------~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~--- 166 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAE-------YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS--- 166 (1311)
T ss_pred eCCeEEEEEcCCCCcccc-------ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc---
Confidence 467899999987543321 111222233222211 1233454444444566776655332211110
Q ss_pred cceeeeeeeeecc-cCCcEEEEEeecCCCEEEEecCCCeEE--EEEcCcccccc-------ccccccccccccccccccc
Q 000654 566 TNNVFLVAEFSSC-FGARIMCLDASFEDEVLFCGDLRGNLV--LFPLLRDLLND-------KSVALHVEVSPLNYFKGAH 635 (1371)
Q Consensus 566 ~~~l~l~~~~~~~-h~~~Itsl~~spdg~lLatGs~dGtI~--Iwd~~~~~~~~-------~~~~~~~~l~p~~~~~g~h 635 (1371)
.+...|..+ -+..|+|+....+|+++.+| +||.|+ +|...++=+.. +.......++.+-.++|.+
T Consensus 167 ----~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~ 241 (1311)
T KOG1900|consen 167 ----IFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSS 241 (1311)
T ss_pred ----ccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCC
Confidence 011112222 25568899988888877554 566666 44444331100 0000001111112223344
Q ss_pred CCcCeEEEEEeecCCCceEEEEEcCCCcEEEEEEecCCc
Q 000654 636 GISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRE 674 (1371)
Q Consensus 636 g~~~VTsV~f~~~~~~~~~L~T~g~DG~v~iw~l~~~~~ 674 (1371)
. ++|.++++. .....+++-++-|++++|++...+.
T Consensus 242 ~-dpI~qi~ID---~SR~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 242 K-DPIRQITID---NSRNILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred C-CcceeeEec---cccceeeeeccCceEEEEEccCCCc
Confidence 4 889999888 3457899999999999999988543
No 422
>PHA03098 kelch-like protein; Provisional
Probab=66.88 E-value=2.2e+02 Score=36.09 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=16.3
Q ss_pred CCcEEEEEECC------CcEEEEECCCCeEE
Q 000654 146 GNRSLAIGCSD------NSIRVWDISNSSII 170 (1371)
Q Consensus 146 dg~~Latgs~D------g~I~vWd~~~~~~~ 170 (1371)
++...+.||.+ +.+..||..+.+..
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 55666777632 45788898776543
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.48 E-value=62 Score=38.61 Aligned_cols=102 Identities=16% Similarity=0.197 Sum_probs=67.5
Q ss_pred ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC-CEEEEEeCCCeEE
Q 000654 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCR 331 (1371)
Q Consensus 253 ~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~-~~L~Sgs~Dg~I~ 331 (1371)
...+++|.+|.|++|.+.||.--.|++|.+++....+.. .... .........|....|.. .-+|... +.-+-
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~-----l~~~-~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e 135 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ-----LEYT-QECKTKNANILGFCWTSSTEIAFIT-DQGIE 135 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh-----hHHH-HHhccCcceeEEEEEecCeeEEEEe-cCCeE
Confidence 345679999999999999999999999999998544321 1110 12233345577888874 3344443 33466
Q ss_pred EEeC--CCcEEEEEeeccCcCEEEEEEcCCCCE
Q 000654 332 VWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (1371)
Q Consensus 332 VWd~--~g~~l~~l~~h~~~~V~sl~~spdg~~ 362 (1371)
+|.. ..+.++..+.|.. +|.=-.|.++.+.
T Consensus 136 ~y~v~pekrslRlVks~~~-nvnWy~yc~et~v 167 (657)
T KOG2377|consen 136 FYQVLPEKRSLRLVKSHNL-NVNWYMYCPETAV 167 (657)
T ss_pred EEEEchhhhhhhhhhhccc-CccEEEEccccce
Confidence 6665 4455666666776 5877788888774
No 424
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=64.36 E-value=91 Score=37.80 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=66.6
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCe-----EEEEEEee-cCccEEEEEeeccccccCCCCcceeeE
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT-----LIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFE 90 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~-----~l~~~~~~-~~~~I~~i~~s~~~~~~~pdg~~~~~~ 90 (1371)
...++++.|. ++ +.+++++.+|.+. +....++ ...+.... ....+.++.|. +++ ..
T Consensus 280 ~~~l~~v~~~--~d----g~l~l~g~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~-------~d~----~~ 341 (398)
T PLN00033 280 ARRIQNMGWR--AD----GGLWLLTRGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYR-------SKK----EA 341 (398)
T ss_pred ccceeeeeEc--CC----CCEEEEeCCceEE-EecCCCCcccccceeecccCCCCcceEEEEEc-------CCC----cE
Confidence 4568899998 88 8899999887764 4444443 22222211 22348888888 776 67
Q ss_pred EEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEE
Q 000654 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (1371)
Q Consensus 91 la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vW 162 (1371)
++++..|.+....-. +. .++.......-....+.+.|.+ +++.++ .+.+|.|.-|
T Consensus 342 ~a~G~~G~v~~s~D~-G~------------tW~~~~~~~~~~~~ly~v~f~~---~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 342 WAAGGSGILLRSTDG-GK------------SWKRDKGADNIAANLYSVKFFD---DKKGFV-LGNDGVLLRY 396 (398)
T ss_pred EEEECCCcEEEeCCC-Cc------------ceeEccccCCCCcceeEEEEcC---CCceEE-EeCCcEEEEe
Confidence 777777766655322 11 1333322233446788999876 555555 4567776554
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=62.87 E-value=24 Score=27.99 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=25.1
Q ss_pred CcEEEEEEEecCCCCCCCCEEEEEeC-CcEEEEECCC
Q 000654 18 GEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEA 53 (1371)
Q Consensus 18 ~~Vtavafs~~pd~~~~~~llaaG~d-g~I~Iwd~~s 53 (1371)
|.|.+++|+ |+.+. ..+|+...+ +.|.|+|+.+
T Consensus 1 GAvR~~kFs--P~~~~-~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFS--PEPGG-NDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeC--CCCCc-ccEEEEEccCCeEEEEEccc
Confidence 578999999 86111 157887775 9999999985
No 426
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=61.39 E-value=3.5e+02 Score=32.44 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=72.2
Q ss_pred cEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEEeecCCCEEEEecCCCeEEEEEcCccccc
Q 000654 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLN 615 (1371)
Q Consensus 536 ~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~ 615 (1371)
-|++..+.+|.+..|.+..... ......++..|.. ...+-.+.+......|..|-.+--|+-|+.+...
T Consensus 172 ~ya~v~~k~G~~~Qy~L~~~~~-------g~v~~~lVR~f~~--~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~-- 240 (381)
T PF02333_consen 172 LYAFVNGKDGRVEQYELTDDGD-------GKVSATLVREFKV--GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEG-- 240 (381)
T ss_dssp EEEEEEETTSEEEEEEEEE-TT-------SSEEEEEEEEEE---SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC--
T ss_pred EEEEEecCCceEEEEEEEeCCC-------CcEeeEEEEEecC--CCcceEEEEecccCCEEEecCccEEEEEecCCCC--
Confidence 4677888899999998863221 1123355666653 3468888888888899999999998888876431
Q ss_pred ccccccccccccccccccccCCcCeEEEEEeecCCCceEEEEE-cCCCcEEEEEEecC
Q 000654 616 DKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRST-GGDGCICYLEYDKD 672 (1371)
Q Consensus 616 ~~~~~~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~~~~L~T~-g~DG~v~iw~l~~~ 672 (1371)
......+ ....+.|=..-|..|++........||+.. -.|+++.+|+.+..
T Consensus 241 ---~~~~~~v---~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 241 ---GNDRTLV---ASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp ----S--EEE---EEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ---CCcceee---ecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 0111111 111111113568888887655444555554 46889999997653
No 427
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.22 E-value=2.6e+02 Score=35.91 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=31.3
Q ss_pred CcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCC
Q 000654 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1371)
Q Consensus 133 ~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~ 177 (1371)
..+..+..+| +..+|+.=...|.|.+-+.+..+.+..+.++.
T Consensus 217 ~~~~ki~VS~---n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~ 258 (829)
T KOG2280|consen 217 SSVVKISVSP---NRRFLALYTETGKIWVVSIDLSQILCEFNCTD 258 (829)
T ss_pred ceEEEEEEcC---CcceEEEEecCCcEEEEecchhhhhhccCCCC
Confidence 4577788888 88888888888888888877666665555443
No 428
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=59.35 E-value=4e+02 Score=32.45 Aligned_cols=43 Identities=14% Similarity=-0.027 Sum_probs=35.1
Q ss_pred eEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 000654 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1371)
Q Consensus 248 ~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~ 290 (1371)
....+......+.+|..+|++++.|+...=|.|.++|+..+..
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 3445666677899999999999888887789999999988654
No 429
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.12 E-value=71 Score=43.20 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=48.2
Q ss_pred CCccEEEEEEc-CCEEEEEeCCCeEEEEeC--C---C---c-E----------------EEEEeeccCcCEEEEEEcCCC
Q 000654 307 HNARVWDCCLT-DSFIITAGEDCTCRVWGS--D---G---K-Q----------------LKMIKEHIGRGIWRCLYDSLS 360 (1371)
Q Consensus 307 h~~~I~~l~~s-~~~L~Sgs~Dg~I~VWd~--~---g---~-~----------------l~~l~~h~~~~V~sl~~spdg 360 (1371)
....|.++... ...++-+|.|| .+|.+ . | + + +..+.+-..++|..+++....
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 35678888865 45666666777 56654 1 1 1 1 112222223489999999888
Q ss_pred CEEEEEECCCcEEEEEcCC
Q 000654 361 SLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 361 ~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
..|.+-+..|+|++|++.+
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999954
No 430
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=57.53 E-value=4.1e+02 Score=31.93 Aligned_cols=203 Identities=13% Similarity=0.096 Sum_probs=96.3
Q ss_pred CEEEEEeCCCeEEEEeCCCcEEEEEeeccCcCEEEEEEc----CCCCE--EEE-EECC---CcEEEEEcCCCCcccccCC
Q 000654 319 SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD----SLSSL--LVT-AGFD---SAIKVHQFQAFLPGSLESH 388 (1371)
Q Consensus 319 ~~L~Sgs~Dg~I~VWd~~g~~l~~l~~h~~~~V~sl~~s----pdg~~--L~T-gg~D---g~I~lwdl~~~~~~~l~~~ 388 (1371)
.+++....++-+.+||++|+.+..+.. + .+..+..- -+++. |+. ..++ .+|++|.+...
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~lq~~~~--G-r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~-------- 137 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKELQSLPV--G-RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD-------- 137 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEE-S--S--EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT--------
T ss_pred ceEEEEeCCCCEEEEcCCCcEEEeecC--C-CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC--------
Confidence 577788888999999999999988752 3 24444431 13332 333 3333 47999988431
Q ss_pred CccccccCCccEEEeeecCCccceeeccCCCccEEEEEEe--c-CCcEE--EEEcCCcEEEEEeecCCCce--eEEeEee
Q 000654 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT--S-EDTLY--IATNHGYLYHTKLCDMDSVN--WNKILQV 461 (1371)
Q Consensus 389 ~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs--~-d~~ll--v~t~~G~i~~~~l~~~~~~~--w~~i~~~ 461 (1371)
...+..+..+.. . +......+..+|+. + ++.++ +...+|.+..|.+....... -+.+.+.
T Consensus 138 --------~g~L~~v~~~~~--p---~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f 204 (381)
T PF02333_consen 138 --------TGELTDVTDPAA--P---IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF 204 (381)
T ss_dssp --------TTEEEE-CBTTC------EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred --------CCcceEcCCCCc--c---cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe
Confidence 011111110000 0 00111224555553 3 34443 44567989999888654432 3344454
Q ss_pred cCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCccc-cceeeeeee-ccCcccceeEEEEeecCCCcEEE
Q 000654 462 SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHT-PQLSFTFTW-SAGIERQLLGTYWCKSLGHRFIF 539 (1371)
Q Consensus 462 ~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~-~~~~~~~~~-~~~~~~~il~~~~~~s~d~~~L~ 539 (1371)
.-..++..+.+. .....|++|-++--|.-|+.+...-. ........- ....+.+-+.++ .......||+
T Consensus 205 ~~~sQ~EGCVVD--------De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly-~~~~g~gYLi 275 (381)
T PF02333_consen 205 KVGSQPEGCVVD--------DETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALY-YGSDGKGYLI 275 (381)
T ss_dssp E-SS-EEEEEEE--------TTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEE-E-CCC-EEEE
T ss_pred cCCCcceEEEEe--------cccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEE-ecCCCCeEEE
Confidence 444555555443 23478999998876655555422211 111100000 011122233322 1122334655
Q ss_pred -EEcCCCcEEEEeCCC
Q 000654 540 -TADPKGRLKLWQLCD 554 (1371)
Q Consensus 540 -s~s~dg~I~lWdi~~ 554 (1371)
|.-.+..+.+|+...
T Consensus 276 vSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 276 VSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEGGGTEEEEEESST
T ss_pred EEcCCCCeEEEEecCC
Confidence 555577899999764
No 431
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=57.38 E-value=1.4e+02 Score=36.22 Aligned_cols=59 Identities=12% Similarity=0.118 Sum_probs=45.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCcEEEE-EeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 318 DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 318 ~~~L~Sgs~Dg~I~VWd~~g~~l~~-l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
..++|.|+..|.||+||.-|..-++ +.+... +|-.+..+.+|+++++.+.. .+.+-|+.
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 5799999999999999985544443 444444 79999999999988777654 77787874
No 432
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=57.24 E-value=94 Score=37.73 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=39.8
Q ss_pred eeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCc
Q 000654 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (1371)
Q Consensus 125 ~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~ 178 (1371)
...+......+.+++.+| ++.+.|+...=|.|.++|+.++..++..++-..
T Consensus 300 r~~l~D~~R~~~~i~~sP---~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSP---SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred EEeeccCCceEEEEEECC---CCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 334444555789999999 899888888889999999999988777665443
No 433
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=56.92 E-value=2.2e+02 Score=28.70 Aligned_cols=111 Identities=13% Similarity=0.146 Sum_probs=63.5
Q ss_pred CCEEEEEe-CCcEEEEECCCC--------eEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEec
Q 000654 35 LPFLLAGS-GSQVLLYDLEAG--------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN 105 (1371)
Q Consensus 35 ~~llaaG~-dg~I~Iwd~~sg--------~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~ 105 (1371)
.+-|++++ .+.|.|++.... ..+..++. ...|.+|+-.+.. |+.. .-.|+.+...++..||+.
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~----~~~~--~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLK----PDDG--RDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecC----CCCC--cCEEEEeccceEEEEEcc
Confidence 45566665 699999997633 23445553 2368888766221 2211 146777778999999998
Q ss_pred cCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeE
Q 000654 106 FELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1371)
Q Consensus 106 ~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~ 169 (1371)
... .. -.+.-.+.|+++.+-.......-|+..+.+..|.-+|.+..+.
T Consensus 82 ~N~--------------d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 NNS--------------DL--FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred cCc--------------hh--hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 532 00 1122346788887754322223344444466677677654443
No 434
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=56.72 E-value=52 Score=41.17 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=69.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeCC
Q 000654 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD 336 (1371)
Q Consensus 257 ~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~~ 336 (1371)
..+++|.-+|.+..+++++.||+|+++++...+.. .+.....+-..+.|...-|+++..|..+.-|.-+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs-----------ki~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS-----------KICEEAKPKENLVFTNHGLVTATSDRRALAWKED 83 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchh-----------hhhhhcCCccceeeeccceEEEeccchhheeecc
Confidence 44677788899999999999999999998876541 2222233344566666668888888888888877
Q ss_pred CcEEEEEe--eccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 337 GKQLKMIK--EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 337 g~~l~~l~--~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
|-..+.|. ....+...++...|..+.++ |.--|.|.-+|.
T Consensus 84 gvvqqqfdyndqsekefss~~cdptaqnvv-gtlcggv~q~dc 125 (1636)
T KOG3616|consen 84 GVVQQQFDYNDQSEKEFSSILCDPTAQNVV-GTLCGGVEQFDC 125 (1636)
T ss_pred CcchhhccccchhhhhccceecCchhhhhh-hhhccceeeehH
Confidence 75444433 22333466677777654332 223334444443
No 435
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=56.56 E-value=2.6e+02 Score=33.43 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=54.9
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-CCEEEE
Q 000654 257 GSIFRIEWSSCGSKLVSVS-----------DDR-SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIIT 323 (1371)
Q Consensus 257 ~~I~~v~~spdg~~LaS~s-----------~Dg-~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-~~~L~S 323 (1371)
.....|+|.++|+++++-. ..+ .|.+++-.++.-. ..... .+...-.....+++. +. |+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~----~d~~~--vfa~~l~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK----YDKSN--VFAEELSMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC----cceeE--EeecCCCCccceeEecCC-EEE
Confidence 4566789999999877653 223 6666654432210 11111 222223345778876 34 555
Q ss_pred EeCCCeEEEEeCCC------cEE---EEEeec----cCcCEEEEEEcCCCCEEEEEEC
Q 000654 324 AGEDCTCRVWGSDG------KQL---KMIKEH----IGRGIWRCLYDSLSSLLVTAGF 368 (1371)
Q Consensus 324 gs~Dg~I~VWd~~g------~~l---~~l~~h----~~~~V~sl~~spdg~~L~Tgg~ 368 (1371)
+......++.+.++ +.. ..+... .. ....++|.|||.+.++-+.
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~-~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHH-SLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc-cccCceECCCCCEEEeccc
Confidence 55554444445532 211 112221 12 3678999999987666553
No 436
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=56.09 E-value=31 Score=27.37 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=26.4
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCcEEEEEccC
Q 000654 257 GSIFRIEWSSCG---SKLVSVSDDRSARIWEVRA 287 (1371)
Q Consensus 257 ~~I~~v~~spdg---~~LaS~s~Dg~VriWdl~~ 287 (1371)
+.|.++.|+|+. .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888889999999985
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=55.92 E-value=4.3e+02 Score=32.95 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=16.8
Q ss_pred CCcEEEEEECC---CcEEEEECCCCeEE
Q 000654 146 GNRSLAIGCSD---NSIRVWDISNSSII 170 (1371)
Q Consensus 146 dg~~Latgs~D---g~I~vWd~~~~~~~ 170 (1371)
++...+.||.+ ..+..||..+.+..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQ 389 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence 66777777754 34778888776543
No 438
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=55.39 E-value=5.3e+02 Score=32.62 Aligned_cols=117 Identities=9% Similarity=-0.025 Sum_probs=59.4
Q ss_pred CEEEEEeCCcEEEEECCCCeEEEEEEeecCccEEE---EEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCC
Q 000654 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHG---ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1371)
Q Consensus 36 ~llaaG~dg~I~Iwd~~sg~~l~~~~~~~~~~I~~---i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~ 112 (1371)
.++++..++.|.-+|.++|+++-++.......+.. ..+.... ...-++ .+++...++.|.-+|..+++
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg-~av~~~----~v~v~t~dg~l~ALDa~TGk---- 141 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG-VALYDG----KVFFGTLDARLVALDAKTGK---- 141 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCccccccccccccccc-ceEECC----EEEEEcCCCEEEEEECCCCC----
Confidence 44444457899999999999988776321111211 0000000 000122 56666668888888877643
Q ss_pred CCCCccceeeeeeeeccCCCC--cEEEEEEEeecCCCcEEEEEEC------CCcEEEEECCCCeEEEEEe
Q 000654 113 QYQPETCVNLSLVQSLPRLSH--WVFDVCFLKVCNGNRSLAIGCS------DNSIRVWDISNSSIILEVH 174 (1371)
Q Consensus 113 ~~~~~~~v~~~~~~~l~gh~~--~I~~v~fsp~~~dg~~Latgs~------Dg~I~vWd~~~~~~~~~l~ 174 (1371)
+..+ ..+..+.. .+.+--..- ++ .++++.. ++.|.-+|..+|+.+-++.
T Consensus 142 -------~~W~--~~~~~~~~~~~~tssP~v~---~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 142 -------VVWS--KKNGDYKAGYTITAAPLVV---KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred -------EEee--cccccccccccccCCcEEE---CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 0011 11111110 111111111 33 3444432 6889999999998876654
No 439
>PHA03098 kelch-like protein; Provisional
Probab=54.71 E-value=3.2e+02 Score=34.55 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=16.1
Q ss_pred CCcEEEEEECC-----CcEEEEECCCCeE
Q 000654 146 GNRSLAIGCSD-----NSIRVWDISNSSI 169 (1371)
Q Consensus 146 dg~~Latgs~D-----g~I~vWd~~~~~~ 169 (1371)
++...+.||.+ +.+..||..+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 56777778765 3467788876654
No 440
>PRK13684 Ycf48-like protein; Provisional
Probab=53.61 E-value=4.4e+02 Score=31.11 Aligned_cols=114 Identities=10% Similarity=-0.005 Sum_probs=61.7
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-CCEEEEEeCCCeEEEE
Q 000654 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1371)
Q Consensus 255 H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-~~~L~Sgs~Dg~I~VW 333 (1371)
-...++++.+.++++.++.+ ..|.+++=....+.. .+.+. .....-...+.++.+. +..++.++.+|.+..
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s-----W~~~~-~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~- 284 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES-----WSKPI-IPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV- 284 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-----ccccc-CCccccccceeeEEEcCCCCEEEEcCCCeEEE-
Confidence 34678899999998876654 556654322222211 11000 0001112346778887 445667777886653
Q ss_pred eC-CCcEEEEEee--ccCcCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q 000654 334 GS-DGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1371)
Q Consensus 334 d~-~g~~l~~l~~--h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl 377 (1371)
.. .|+.-..... ......+.+.|..+++.++ .|..|.|--++-
T Consensus 285 S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 285 SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 44 3443333321 1111477888876665544 667888877654
No 441
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=50.74 E-value=2.7e+02 Score=28.14 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcC-----C
Q 000654 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-----C 267 (1371)
Q Consensus 193 ~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~sp-----d 267 (1371)
...|+.++.-|+|.|.+......... .....+..+ .-...|++|+--+ +
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~-------------------------~~~~~i~~L-Nin~~italaaG~l~~~~~ 63 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTG-------------------------RQDSDISFL-NINQEITALAAGRLKPDDG 63 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccc-------------------------cccCceeEE-ECCCceEEEEEEecCCCCC
Confidence 34688888899999999772111000 011122222 2345666665433 3
Q ss_pred CCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEc-----CCEEEEEeCCCeEEEEeCCCcEE
Q 000654 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGSDGKQL 340 (1371)
Q Consensus 268 g~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s-----~~~L~Sgs~Dg~I~VWd~~g~~l 340 (1371)
...|+.|+.. ++..||+...... ....-...|.++.+- +.-++..+.++.|.-||.+|+.+
T Consensus 64 ~D~LliGt~t-~llaYDV~~N~d~-----------Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 64 RDCLLIGTQT-SLLAYDVENNSDL-----------FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred cCEEEEeccc-eEEEEEcccCchh-----------hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 4567766665 7899999876541 223334566776663 34556666678888888876654
No 442
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.71 E-value=89 Score=34.50 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=48.1
Q ss_pred cEEEEEEcCCEEEEEeCCCeEEEEeC-CCcEEEE-------Ee-------eccCcCEEEEEEcCCCCEEEEEECCCcEEE
Q 000654 310 RVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKM-------IK-------EHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1371)
Q Consensus 310 ~I~~l~~s~~~L~Sgs~Dg~I~VWd~-~g~~l~~-------l~-------~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~l 374 (1371)
.+..+...+++|+.-..+|.+++||+ .++.+.. +. .... .|..+.++.+|.-|++-+ +|....
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~-~i~~~~lt~~G~PiV~ls-ng~~y~ 91 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSP-NITSCSLTSNGVPIVTLS-NGDSYS 91 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCC-cEEEEEEcCCCCEEEEEe-CCCEEE
Confidence 45556767899999999999999999 5443221 11 1223 589999998888777765 577788
Q ss_pred EEcC
Q 000654 375 HQFQ 378 (1371)
Q Consensus 375 wdl~ 378 (1371)
|+.+
T Consensus 92 y~~~ 95 (219)
T PF07569_consen 92 YSPD 95 (219)
T ss_pred eccc
Confidence 8763
No 443
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=49.49 E-value=7.9e+02 Score=32.88 Aligned_cols=220 Identities=11% Similarity=0.030 Sum_probs=108.4
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEE
Q 000654 356 YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1371)
Q Consensus 356 ~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv 435 (1371)
+-++...+++-+.+|.|+--++..-..+...++.. ... .+.........+.....+.+++
T Consensus 492 li~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~--------s~~------------klKe~D~l~~~~~~~t~d~Lll 551 (800)
T TIGR01063 492 LIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGV--------SGA------------DMKDDDFIEQLLVASTHDYLLF 551 (800)
T ss_pred ccCcceEEEEEcCCCEEEecchhhhhhhcccCcCc--------ccc------------ccCCCCeeEEEEEecCCCeEEE
Confidence 34556678889999999887663211111111000 000 0001111223333344557889
Q ss_pred EEcCCcEEEEEeecCCCceeE-------EeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCcccc
Q 000654 436 ATNHGYLYHTKLCDMDSVNWN-------KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (1371)
Q Consensus 436 ~t~~G~i~~~~l~~~~~~~w~-------~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~ 508 (1371)
.|+.|+++.+..++.....|. .+.....+..|..+-.... ..+...+++.+.+|.++-.++..-....
T Consensus 552 fTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~-----~~~~~~lvliT~~GyiKRi~l~~~~~~~ 626 (800)
T TIGR01063 552 FTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKE-----FDDGLYLFFATKNGVVKKTSLTEFSNIR 626 (800)
T ss_pred EeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEecc-----CCCCCEEEEEeCCCEEEEEEhHHhhhhc
Confidence 999999998876654443331 1122233334433322111 2345688999999999887765422111
Q ss_pred cee-eeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecccCCcEEEEE
Q 000654 509 QLS-FTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLD 587 (1371)
Q Consensus 509 ~~~-~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~ 587 (1371)
... ....+. ....+..++.+. ....++..+..|.+....+...+..+.. ...... ....-+..|.++.
T Consensus 627 r~G~~aiklk--e~D~lv~v~~~~--~~d~lll~Ts~Gr~~r~~v~eIp~~gr~----~~Gv~~---i~L~~~E~Vv~~~ 695 (800)
T TIGR01063 627 SNGIIAIKLD--DGDELISVRLTS--GDDEVMLGSKNGKAVRFPEEDVRPMGRA----ARGVRG---IKLKNEDFVVSLL 695 (800)
T ss_pred cCCcccccCC--CCCEEEEEEEeC--CCCEEEEEECCCcEEEEEhhhcCCcCCC----CCCeec---ccCCCCCEEEEEE
Confidence 100 011111 123344433332 2334555556677666655433221110 000010 1112244566666
Q ss_pred eecCCCEEEEecCCCeEEEEEcCc
Q 000654 588 ASFEDEVLFCGDLRGNLVLFPLLR 611 (1371)
Q Consensus 588 ~spdg~lLatGs~dGtI~Iwd~~~ 611 (1371)
...++..++..+..|.++-..++.
T Consensus 696 ~v~~~~~ll~vT~~G~~Kr~~l~e 719 (800)
T TIGR01063 696 VVSEESYLLIVTENGYGKRTSIEE 719 (800)
T ss_pred EeccccEEEEEecCCcEEEEEHHH
Confidence 555666788999999999887664
No 444
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=49.23 E-value=4.3e+02 Score=29.76 Aligned_cols=84 Identities=15% Similarity=0.052 Sum_probs=45.5
Q ss_pred CEEEEEEcCCCCEEEEEe---CCCcEEEEEccCCcccCCCCceeeec-eEeecCCccEEEEEEc-CCEEEE-Ee-CCCeE
Q 000654 258 SIFRIEWSSCGSKLVSVS---DDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT-DSFIIT-AG-EDCTC 330 (1371)
Q Consensus 258 ~I~~v~~spdg~~LaS~s---~Dg~VriWdl~~~~~~~~~~~~~~~~-~~~~gh~~~I~~l~~s-~~~L~S-gs-~Dg~I 330 (1371)
.|..+++||||..++... .++.|.+=-+...... .......+ .........+.++.|. +..|+. +. .+..+
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g--~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~ 190 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG--VPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPV 190 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC--CcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCce
Confidence 899999999999877655 3567777665432220 00111111 1222345678999998 343433 33 33333
Q ss_pred EE-EeCCCcEEEEE
Q 000654 331 RV-WGSDGKQLKMI 343 (1371)
Q Consensus 331 ~V-Wd~~g~~l~~l 343 (1371)
.. ....|.....+
T Consensus 191 ~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 191 VRLVSVDGGPSTPL 204 (253)
T ss_pred eEEEEccCCccccc
Confidence 33 34455554444
No 445
>PRK10115 protease 2; Provisional
Probab=48.84 E-value=7.6e+02 Score=32.45 Aligned_cols=194 Identities=7% Similarity=-0.020 Sum_probs=0.0
Q ss_pred EEEEEEEecCCCCCCCCEEEEEeC------CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEE
Q 000654 20 ISALCFVHLPSHLSSLPFLLAGSG------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1371)
Q Consensus 20 Vtavafs~~pd~~~~~~llaaG~d------g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~ 93 (1371)
+..+.++ || +++|+.+.| -.|++.|+.+|+.+...-.... ..++|+ +|++ .++.+
T Consensus 129 l~~~~~S--pd----g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~-------~D~~---~~~y~ 189 (686)
T PRK10115 129 LGGMAIT--PD----NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWA-------NDSW---TFYYV 189 (686)
T ss_pred EeEEEEC--CC----CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEe-------eCCC---EEEEE
Q ss_pred ECCC------eEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEE-EEEEEeecCCCcEEEEEEC---CCcEEEEE
Q 000654 94 FGEK------RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF-DVCFLKVCNGNRSLAIGCS---DNSIRVWD 163 (1371)
Q Consensus 94 ~gd~------sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~-~v~fsp~~~dg~~Latgs~---Dg~I~vWd 163 (1371)
.-+. .|..+++.++. -+....+........ .+..+. ++.+++..+. ++.+.+++
T Consensus 190 ~~~~~~~~~~~v~~h~lgt~~-------------~~d~lv~~e~~~~~~~~~~~s~---d~~~l~i~~~~~~~~~~~l~~ 253 (686)
T PRK10115 190 RKHPVTLLPYQVWRHTIGTPA-------------SQDELVYEEKDDTFYVSLHKTT---SKHYVVIHLASATTSEVLLLD 253 (686)
T ss_pred EecCCCCCCCEEEEEECCCCh-------------hHCeEEEeeCCCCEEEEEEEcC---CCCEEEEEEECCccccEEEEE
Q ss_pred --CCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEE--EeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee
Q 000654 164 --ISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS--GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1371)
Q Consensus 164 --~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Las--gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1371)
...+.....+............+ .+..+|.+ +.....|...++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ly~~tn~~~~~~~l~~~~~~---------------------------- 301 (686)
T PRK10115 254 AELADAEPFVFLPRRKDHEYSLDHY----QHRFYLRSNRHGKNFGLYRTRVR---------------------------- 301 (686)
T ss_pred CcCCCCCceEEEECCCCCEEEEEeC----CCEEEEEEcCCCCCceEEEecCC----------------------------
Q ss_pred cccccceeeEEEEecc-cC-CEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 000654 240 QDQQHTAVNLFRLVGH-EG-SIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1371)
Q Consensus 240 ~~~~~~~~~~~~l~gH-~~-~I~~v~~spdg~~LaS~s~Dg~VriWdl~ 286 (1371)
.......+..+ .. .|..+.+. .+.++++...++.-+++-+.
T Consensus 302 -----~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 302 -----DEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred -----CcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
No 446
>PHA02790 Kelch-like protein; Provisional
Probab=48.49 E-value=6e+02 Score=31.73 Aligned_cols=62 Identities=8% Similarity=0.017 Sum_probs=30.8
Q ss_pred CCcEEEEEECC--CcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCcEEEEEeCCC---eEEEEEcc
Q 000654 146 GNRSLAIGCSD--NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN---EIIVWKVD 211 (1371)
Q Consensus 146 dg~~Latgs~D--g~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~~Lasgs~dg---~I~vWd~~ 211 (1371)
++...+.||.+ .++..||..+++....-.-+..-.-.++.. -++.+.+.|+.++ .+..||..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~----~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS----INNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE----ECCEEEEecCcCCCCccEEEEeCC
Confidence 66777777754 457788876654432211111111111111 2455666666443 35566665
No 447
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=48.21 E-value=5.2e+02 Score=30.87 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=22.6
Q ss_pred CeEEEEeCCCcEEEEEeeccCcCEEEEEEcCCCCEEEEEE
Q 000654 328 CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1371)
Q Consensus 328 g~I~VWd~~g~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg 367 (1371)
|.|..++.++..+..+... .+..+.++|+++|+++++-.
T Consensus 164 g~i~r~~pdg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ceEEEEecCCCeEEEEecC-cCCCccceECCCCCEEEEcc
Confidence 3455555555444444322 22467889998888776643
No 448
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.48 E-value=1.1e+02 Score=33.93 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=51.9
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEE
Q 000654 356 YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1371)
Q Consensus 356 ~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv 435 (1371)
+..++.+|+....+|.+++||+...... +.. .++ .+++.... ... ......|..+.+..+|.-++
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~-~~~--~Si-----~pll~~~~--~~~-----~~~~~~i~~~~lt~~G~PiV 82 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAV-LPP--VSI-----APLLNSSP--VSD-----KSSSPNITSCSLTSNGVPIV 82 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeec-cCC--ccH-----HHHhcccc--ccc-----CCCCCcEEEEEEcCCCCEEE
Confidence 4456889999999999999999542110 000 000 00110000 000 03445788899999998888
Q ss_pred EEcCCcEEEEEeecCCCceeEEeEe
Q 000654 436 ATNHGYLYHTKLCDMDSVNWNKILQ 460 (1371)
Q Consensus 436 ~t~~G~i~~~~l~~~~~~~w~~i~~ 460 (1371)
.-++|..|. |+..-..|.++.+
T Consensus 83 ~lsng~~y~---y~~~L~~W~~vsd 104 (219)
T PF07569_consen 83 TLSNGDSYS---YSPDLGCWIRVSD 104 (219)
T ss_pred EEeCCCEEE---eccccceeEEecc
Confidence 888888874 4555566876654
No 449
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=46.42 E-value=5.5e+02 Score=30.15 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=63.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCc------EEEEEccCCcccCCCCceeeeceEeecCCc--------cEEEEEEc--CCE
Q 000654 257 GSIFRIEWSSCGSKLVSVSDDRS------ARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--------RVWDCCLT--DSF 320 (1371)
Q Consensus 257 ~~I~~v~~spdg~~LaS~s~Dg~------VriWdl~~~~~~~~~~~~~~~~~~~~gh~~--------~I~~l~~s--~~~ 320 (1371)
+.+..|.+.+++..++..|+++. +...++..... ....+.......+....+ ..-++++. +.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 55778999987778888899888 66666554111 000111111112222111 22356663 455
Q ss_pred EEEEeCC------CeEEEEeCCCcEEEEEe--------------eccCcCEEEEEEcCCCCEEEEEEC
Q 000654 321 IITAGED------CTCRVWGSDGKQLKMIK--------------EHIGRGIWRCLYDSLSSLLVTAGF 368 (1371)
Q Consensus 321 L~Sgs~D------g~I~VWd~~g~~l~~l~--------------~h~~~~V~sl~~spdg~~L~Tgg~ 368 (1371)
+++.-.+ ..|+.++.+|+.+..+. ...+++.-+++++|+|+.|+++-.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 5555445 56777777776654431 123347999999999996666543
No 450
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=44.54 E-value=3.6e+02 Score=33.29 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=63.3
Q ss_pred EEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEee-cCCccEEEEEEcCCE--------E
Q 000654 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY-GHNARVWDCCLTDSF--------I 321 (1371)
Q Consensus 251 ~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~-gh~~~I~~l~~s~~~--------L 321 (1371)
.+...-...+.|+|.||+++|++--..|.|++++....... .+..+. .... .-......|++++++ |
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~---~~~~l~-~v~~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVK---VVFTLP-EIVNDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCcee---eeecCC-ceeccCCCCceeeEEECCCccccCCCcEE
Confidence 34445567889999999988877665789999976543220 011111 0111 125668889998653 4
Q ss_pred EEEe-C---------CCeEEEEeCC-C-------cEE-EEE---eeccCcCEEEEEEcCCCCEEEEEECC
Q 000654 322 ITAG-E---------DCTCRVWGSD-G-------KQL-KMI---KEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1371)
Q Consensus 322 ~Sgs-~---------Dg~I~VWd~~-g-------~~l-~~l---~~h~~~~V~sl~~spdg~~L~Tgg~D 369 (1371)
+... . ...|.-|.++ . +.+ ..+ ..|.+ ..|+|.|||.+.++.|+.
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G---grI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG---GRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC---ceEEECCCCcEEEEECCC
Confidence 3332 1 2234445442 1 111 111 12544 478899999877776654
No 451
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=43.09 E-value=4.3e+02 Score=31.86 Aligned_cols=163 Identities=11% Similarity=0.096 Sum_probs=89.0
Q ss_pred EecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecC-CccEE-EEE-Ec-CCEEEEEeCC
Q 000654 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVW-DCC-LT-DSFIITAGED 327 (1371)
Q Consensus 252 l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh-~~~I~-~l~-~s-~~~L~Sgs~D 327 (1371)
+..-...|..+-..|||+.|..-+. ..+.++++.+.... .+++. ....+. ...|+ .+. .+ +.-++..++|
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~----~rkl~-~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQ----IRKLV-DDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccc----hhhhh-hcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 4444566777888999998766555 57888988775442 11110 000110 01111 111 12 4678888999
Q ss_pred CeEEEE-eC--CCcE-E---EEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccE
Q 000654 328 CTCRVW-GS--DGKQ-L---KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1371)
Q Consensus 328 g~I~VW-d~--~g~~-l---~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i 400 (1371)
|.|.-| |. ++.+ + +.++-... .+.-+.-..+.+-+++-...|++.++....... +
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa-~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~-----------------l 351 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPA-EVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL-----------------L 351 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcc-cceeeccccccceEEEEcCCCceeeeecccCcc-----------------e
Confidence 999888 44 3322 1 11221112 233333233344566777777777765532100 0
Q ss_pred EEeeecCCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEEEeecCC
Q 000654 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMD 451 (1371)
Q Consensus 401 ~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~~l~~~~ 451 (1371)
....-.+.+.-++++|.+..++.-+.|++..+.+.+..
T Consensus 352 -------------L~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 352 -------------LFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred -------------ehhhhhcCcceeeeCcccchheeecCCceEEEEecCCC
Confidence 00011123567789999988888889999888776643
No 452
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=42.36 E-value=9.8e+02 Score=31.89 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=58.5
Q ss_pred cCccEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCC---CCcEEEEEE
Q 000654 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL---SHWVFDVCF 140 (1371)
Q Consensus 64 ~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh---~~~I~~v~f 140 (1371)
.+.+|..|+|........+. ...|++-...++.|+.............+...+...++..+..+ ..+.-+++|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~----~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~F 153 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEK----SRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAF 153 (765)
T ss_pred CCCCeeEEEecccccccCCc----CcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEe
Confidence 45589999997321111111 15788888899999995433210001111122334445444422 236789999
Q ss_pred EeecCCCcEEEEEECCCcEEEEEC
Q 000654 141 LKVCNGNRSLAIGCSDNSIRVWDI 164 (1371)
Q Consensus 141 sp~~~dg~~Latgs~Dg~I~vWd~ 164 (1371)
+|. +...||+-...|.-.||++
T Consensus 154 nP~--~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 154 NPW--DQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccC--ccceEEEEeccCcEEEEEe
Confidence 993 5568999999999999999
No 453
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=41.86 E-value=85 Score=23.90 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=21.5
Q ss_pred CCEEEEEe--CCcEEEEECCCCeEEEEEEe
Q 000654 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQV 62 (1371)
Q Consensus 35 ~~llaaG~--dg~I~Iwd~~sg~~l~~~~~ 62 (1371)
++.|.++. ++.|.++|..+++.+.++..
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 45555544 59999999999998888876
No 454
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=41.58 E-value=5.4e+02 Score=29.63 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=43.1
Q ss_pred cEEEEeCCCCc-------ccCcEEEEEEEecCCCCCCCCEEEEEe-------CCcEEEEECCCCeEEEEEEe-----ecC
Q 000654 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-------GSQVLLYDLEAGTLIRPFQV-----FHG 65 (1371)
Q Consensus 5 tV~iWdl~~~~-------h~~~Vtavafs~~pd~~~~~~llaaG~-------dg~I~Iwd~~sg~~l~~~~~-----~~~ 65 (1371)
.|.+||..+.+ ..|.|++|.|. .+ ..++++|. ...+..||.++..-- .+.. ..
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~--~~----~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ip- 88 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWA--SN----NQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIP- 88 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEe--cC----CEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCC-
Confidence 48899988777 56889999997 54 67888875 157899998876431 2221 12
Q ss_pred ccEEEEEee
Q 000654 66 IRLHGISCN 74 (1371)
Q Consensus 66 ~~I~~i~~s 74 (1371)
.+|..+.+.
T Consensus 89 gpv~a~~~~ 97 (281)
T PF12768_consen 89 GPVTALTFI 97 (281)
T ss_pred CcEEEEEee
Confidence 368777765
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=40.81 E-value=95 Score=33.87 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=38.5
Q ss_pred eEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEEC
Q 000654 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1371)
Q Consensus 89 ~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~ 155 (1371)
.++++.++..|.+|++..+. .+.+..+..- +.|..+.++. .|++|+|--.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~-------------~~~~~~F~Tv-~~V~~l~y~~---~GDYlvTlE~ 79 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEE-------------CPLLCTFSTV-GRVLQLVYSE---AGDYLVTLEE 79 (215)
T ss_pred eEEEEcCCCEEEEEEcccCC-------------CceeEEEcch-hheeEEEecc---ccceEEEEEe
Confidence 67777889999999998433 3455555443 7899999999 8999998644
No 456
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=40.50 E-value=6.2e+02 Score=29.09 Aligned_cols=111 Identities=7% Similarity=0.008 Sum_probs=72.1
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEeCCCeEEEEeC
Q 000654 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS 335 (1371)
Q Consensus 256 ~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~ 335 (1371)
.+.+..+.++. ++...+..+.-++|.|+.+...+ .++ -...-.+--.++..++++...+..|.-+.+.|+
T Consensus 86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP-----~~~---~~lnt~gyaygv~vsGn~aYVadlddgfLivdv 155 (370)
T COG5276 86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSP-----TLI---GFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCc-----cee---ccccCCceEEEEEecCCEEEEeeccCcEEEEEC
Confidence 44556666655 45555667778999999987652 222 112222455677778999999886777778898
Q ss_pred C--CcE--EEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 336 D--GKQ--LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 336 ~--g~~--l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
. .++ ...+....+ .-+.++.| |++-..+..|+-+.+-|+..
T Consensus 156 sdpssP~lagrya~~~~-d~~~v~IS--Gn~AYvA~~d~GL~ivDVSn 200 (370)
T COG5276 156 SDPSSPQLAGRYALPGG-DTHDVAIS--GNYAYVAWRDGGLTIVDVSN 200 (370)
T ss_pred CCCCCceeeeeeccCCC-CceeEEEe--cCeEEEEEeCCCeEEEEccC
Confidence 2 222 223333444 24667775 66777778999999999954
No 457
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=40.35 E-value=5.7e+02 Score=28.61 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.8
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCccccc
Q 000654 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLE 386 (1371)
Q Consensus 350 ~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~ 386 (1371)
+||--.-+|+...++|.-..+-+++||+.|+.++.+.
T Consensus 57 AIwVh~t~P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~ 93 (364)
T COG4247 57 AIWVHATNPDKSLVITTVKKAGLRVYDLSGKQLQSVN 93 (364)
T ss_pred ceEeccCCcCcceEEEeeccCCeEEEecCCCeeeecC
Confidence 4666666788889999999999999999998777665
No 458
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=39.47 E-value=6e+02 Score=28.61 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=59.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEE-ccCCcccCCCCceeeeceEeecCCccEEEEEEc--CCEEEEE---eCCCeEE
Q 000654 258 SIFRIEWSSCGSKLVSVSDDRSARIWE-VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA---GEDCTCR 331 (1371)
Q Consensus 258 ~I~~v~~spdg~~LaS~s~Dg~VriWd-l~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--~~~L~Sg---s~Dg~I~ 331 (1371)
.+..-.|++++...+....+...+++. ...+.. ..+. .....-...|..++++ +..++.. ..++.+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~------~~~~-v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~ 139 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG------EPVE-VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVY 139 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcc------eeEE-ecccccCCceEEEEECCCCcEEEEEEecCCCCeEE
Confidence 667778999977766666677777775 223222 1111 0111111289999998 4444333 3457777
Q ss_pred EEeC----CC------cEEEEEeeccCcCEEEEEEcCCCCEEEEEECCC
Q 000654 332 VWGS----DG------KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (1371)
Q Consensus 332 VWd~----~g------~~l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg 370 (1371)
|=-+ ++ .++........ .++.++|.+++.+++.+...+
T Consensus 140 va~V~r~~~g~~~~l~~~~~~~~~~~~-~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 140 VAGVVRDGDGVPRRLTGPRRVAPPLLS-DVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred EEEEEeCCCCCcceeccceEecccccC-cceeeeecCCCEEEEEeCCCC
Confidence 6654 33 11122222223 589999999988766655533
No 459
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=37.10 E-value=3.7e+02 Score=32.97 Aligned_cols=146 Identities=19% Similarity=0.162 Sum_probs=80.0
Q ss_pred eEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeec-----CCCcEEEEEECCCcEEEEE
Q 000654 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-----NGNRSLAIGCSDNSIRVWD 163 (1371)
Q Consensus 89 ~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~-----~dg~~Latgs~Dg~I~vWd 163 (1371)
.+|...|+..=++|.++.+. ++.+....-|.+- -|.|.|.. .+.+.| +|-++..|.-.|
T Consensus 480 sli~~dg~~~~kLykmDIEr-------------GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrID 543 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIER-------------GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRID 543 (776)
T ss_pred ceEEecCCCcccceeeeccc-------------ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEec
Confidence 35555555445555555433 4555555555543 56666611 012234 465666665556
Q ss_pred CC-CCeEEEEEec--CCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeec
Q 000654 164 IS-NSSIILEVHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1371)
Q Consensus 164 ~~-~~~~~~~l~~--~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~ 240 (1371)
.. .|..+..... -....-++... .....++|+|+..|.|++||.-
T Consensus 544 PR~~gNKi~v~esKdY~tKn~Fss~~---tTesGyIa~as~kGDirLyDRi----------------------------- 591 (776)
T COG5167 544 PRARGNKIKVVESKDYKTKNKFSSGM---TTESGYIAAASRKGDIRLYDRI----------------------------- 591 (776)
T ss_pred ccccCCceeeeeehhccccccccccc---cccCceEEEecCCCceeeehhh-----------------------------
Confidence 53 3322222211 11111111111 2245689999999999999965
Q ss_pred ccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000654 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1371)
Q Consensus 241 ~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~ 287 (1371)
.......+.+-...|..|..+.+|++++..+.. ++.+-|+.-
T Consensus 592 ----g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~i 633 (776)
T COG5167 592 ----GKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVPI 633 (776)
T ss_pred ----cchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEeccc
Confidence 111222345666788999999999987655543 677777654
No 460
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=36.38 E-value=7.5e+02 Score=28.81 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=76.4
Q ss_pred ecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcC-CEEEEEeCCCeEE
Q 000654 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCR 331 (1371)
Q Consensus 253 ~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~-~~L~Sgs~Dg~I~ 331 (1371)
.+-.+.+..+..++||+++++++.-....-||.-...- + .....-..+|..+.|.+ ..|......|.|+
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w------~----~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~ 210 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW------Q----PHNRNSSRRIQSMGFSPDGNLWMLARGGQIQ 210 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-------E----EEE--SSS-EEEEEE-TTS-EEEEETTTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc------e----EEccCccceehhceecCCCCEEEEeCCcEEE
Confidence 34457889999999999888887666666787654211 1 13344567899999983 4444455888888
Q ss_pred EEeC--CCcEEEE--Eee-ccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeec
Q 000654 332 VWGS--DGKQLKM--IKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIP 406 (1371)
Q Consensus 332 VWd~--~g~~l~~--l~~-h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~ 406 (1371)
.=+. +.+.... ... -.+..+..++|.++....+.|+ .|.+.. ..++ ++-+.-
T Consensus 211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~-S~Dg------------------GktW~~--- 267 (302)
T PF14870_consen 211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV-STDG------------------GKTWQK--- 267 (302)
T ss_dssp EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE-ESST------------------TSS-EE---
T ss_pred EccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE-eCCC------------------CccceE---
Confidence 8773 2222111 111 1222588999998877666554 454322 2221 111110
Q ss_pred CCccceeeccCCCccEEEEEEecCCcEEEEEcCCcEEEE
Q 000654 407 NFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1371)
Q Consensus 407 ~~~~~~~~~~~~~~~V~~lafs~d~~llv~t~~G~i~~~ 445 (1371)
......-...+..+.|.++.+-++.+.+|.+++|
T Consensus 268 -----~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 268 -----DRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ------GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred -----CccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 0001112234677888887888899999988765
No 461
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=35.50 E-value=87 Score=39.82 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=42.7
Q ss_pred cCCCEEEEecCCCeEEEEEcCcccccccc--------cccccccccccccc--cccC-CcCeEEEEEeecC-CCceEEEE
Q 000654 590 FEDEVLFCGDLRGNLVLFPLLRDLLNDKS--------VALHVEVSPLNYFK--GAHG-ISTVSTLSVAKLR-SNQTEIRS 657 (1371)
Q Consensus 590 pdg~lLatGs~dGtI~Iwd~~~~~~~~~~--------~~~~~~l~p~~~~~--g~hg-~~~VTsV~f~~~~-~~~~~L~T 657 (1371)
++...++++..||.+..+........... ....+.+..+-... +... ...+.++.+.... .+..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 46778999999999999887752100000 00011111110000 0001 1234444444211 24579999
Q ss_pred EcCCCcEEEEEEecCCc
Q 000654 658 TGGDGCICYLEYDKDRE 674 (1371)
Q Consensus 658 ~g~DG~v~iw~l~~~~~ 674 (1371)
.++|+++|+|++.....
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999988755
No 462
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.98 E-value=7.6e+02 Score=28.44 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=55.4
Q ss_pred CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEEC-------CCeEEEEEeccCCCCCCCCCC
Q 000654 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-------EKRVKLFELNFELSPNSQYQP 116 (1371)
Q Consensus 44 g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~g-------d~sV~vwdl~~~~~~~~~~~~ 116 (1371)
..|.+||..+.+-..--....+ .|..+.|. .+. .+++++. ...+..||+....
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~-------~~~----~Llv~G~ft~~~~~~~~la~yd~~~~~-------- 75 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISG-TVTDLQWA-------SNN----QLLVGGNFTLNGTNSSNLATYDFKNQT-------- 75 (281)
T ss_pred CEEEEEECCCCEeecCCCCceE-EEEEEEEe-------cCC----EEEEEEeeEECCCCceeEEEEecCCCe--------
Confidence 7899999987765443333344 79999987 443 4555543 2468888887533
Q ss_pred ccceeeeeeee-c-cCCCCcEEEEEEEeecCCCc-EEEEEE-C--CCcEEEEECCCCeE
Q 000654 117 ETCVNLSLVQS-L-PRLSHWVFDVCFLKVCNGNR-SLAIGC-S--DNSIRVWDISNSSI 169 (1371)
Q Consensus 117 ~~~v~~~~~~~-l-~gh~~~I~~v~fsp~~~dg~-~Latgs-~--Dg~I~vWd~~~~~~ 169 (1371)
+..+.. . ..-.++|..+.+.. .++. ..+.|. . +..|..||=.+...
T Consensus 76 -----w~~~~~~~s~~ipgpv~a~~~~~--~d~~~~~~aG~~~~g~~~l~~~dGs~W~~ 127 (281)
T PF12768_consen 76 -----WSSLGGGSSNSIPGPVTALTFIS--NDGSNFWVAGRSANGSTFLMKYDGSSWSS 127 (281)
T ss_pred -----eeecCCcccccCCCcEEEEEeec--cCCceEEEeceecCCCceEEEEcCCceEe
Confidence 222211 1 12346788888754 2333 333333 2 33466676544433
No 463
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=34.58 E-value=5.7 Score=47.38 Aligned_cols=149 Identities=20% Similarity=0.314 Sum_probs=93.8
Q ss_pred EEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCcceEEEEEeeccCCCCc-EEEEEeCCCeEEEEEcccC
Q 000654 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWE 213 (1371)
Q Consensus 135 I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~~v~s~~~~~~s~d~~-~Lasgs~dg~I~vWd~~~~ 213 (1371)
.....|-| .+..++.++.+..+..||-. ++.......+..++ .+++ ..++. .++.+...+.+.+||+.++
T Consensus 37 pi~~~w~~---e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~al--dm~w---DkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 37 PIIHRWRP---EGHNLAVACANTIVIYYDKA-GQVILELNPTGKAL--DMAW---DKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred cceeeEec---CCCceehhhhhhHHHhhhhh-cceecccCCchhHh--hhhh---ccccchhhhhhhcCCCeeechhhhh
Confidence 34455666 55568888888888888853 34444443333322 2222 12343 3444667899999998721
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEec-ccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccC
Q 000654 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG-HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1371)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g-H~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~ 292 (1371)
.. ....+.+ |.... +.|++....++.+-..+.++|++....+.
T Consensus 108 yt--------------------------------qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~-- 151 (615)
T KOG2247|consen 108 YT--------------------------------QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR-- 151 (615)
T ss_pred hH--------------------------------HHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhh--
Confidence 10 0001111 22222 67888888888888889999999887655
Q ss_pred CCCceeeeceEeec-CCccEEEEEEc-CCEEEEEeCCCeEEEEeCCC
Q 000654 293 SDSIEEVGSSVLYG-HNARVWDCCLT-DSFIITAGEDCTCRVWGSDG 337 (1371)
Q Consensus 293 ~~~~~~~~~~~~~g-h~~~I~~l~~s-~~~L~Sgs~Dg~I~VWd~~g 337 (1371)
....| |..++.++++. .++.+.++.|..+.+-...|
T Consensus 152 ---------iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qeg 189 (615)
T KOG2247|consen 152 ---------IIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEG 189 (615)
T ss_pred ---------hhhhcccccceeEEEecccceeeecCcHHHHHHhhhcc
Confidence 24456 99999999998 67888888887765544433
No 464
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=33.71 E-value=9.7e+02 Score=29.31 Aligned_cols=153 Identities=12% Similarity=0.053 Sum_probs=86.5
Q ss_pred eEEEEEC-CCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeec-C-CCcEEEEEECCCcEEEEECC
Q 000654 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-N-GNRSLAIGCSDNSIRVWDIS 165 (1371)
Q Consensus 89 ~~la~~g-d~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~-~-dg~~Latgs~Dg~I~vWd~~ 165 (1371)
-.|++++ .|.++||+..... +.+. +.-+... -..+|..++.-.+. . +...||+ -.-+.+.+|.+.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~-----~~~~---~lllE~~---l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~ 105 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNE-----FQPE---DLLLETQ---LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVS 105 (418)
T ss_pred cEEEEeccccEEEEEccCCCC-----CCCc---cEEEEEe---cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEE
Confidence 3555555 8999999985422 2221 1222222 34788888876531 1 2234554 456778888772
Q ss_pred C--Ce-------EEE-EEecCCcceEEEEEeeccCC--CCcEEEEEeCCCeEEEEEcccCCccccCCCCCCCCCCCCCCC
Q 000654 166 N--SS-------IIL-EVHSPERCLLYSMKLWGDNL--EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1371)
Q Consensus 166 ~--~~-------~~~-~l~~~~~~~v~s~~~~~~s~--d~~~Lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1371)
. |. .+. .+..+-....+++..-++.. ...++..=+.||.+.+++-+
T Consensus 106 ~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe---------------------- 163 (418)
T PF14727_consen 106 LVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE---------------------- 163 (418)
T ss_pred ecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC----------------------
Confidence 1 11 111 11222223344544433322 24678888999999999976
Q ss_pred cceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 000654 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1371)
Q Consensus 234 ~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~ 287 (1371)
.......+.+ ---..-+.|.+.-..+++++.+..+.-|....
T Consensus 164 -----------~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 164 -----------SFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred -----------cEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 2222222222 12223467888888999999988888887654
No 465
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.83 E-value=7.3e+02 Score=27.61 Aligned_cols=97 Identities=6% Similarity=-0.056 Sum_probs=49.7
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEE--EcCCccccc-eeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCC
Q 000654 477 PKYPCGIDDWVALGDGKGNMTIVR--VVGDVHTPQ-LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC 553 (1371)
Q Consensus 477 ~~~s~~~~~lla~gs~dG~I~iwd--i~~~~~~~~-~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~ 553 (1371)
..+......+-++-+.+-.|..|| ..++..... ....+.-....+.....- .+...+|...++.-..++|...|..
T Consensus 163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDG-m~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDG-MTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCc-ceEccCCcEEEEEecCcEEEEECCC
Confidence 334444556677777777888888 556554322 111111111111111000 1223456666666667778777776
Q ss_pred CCCCccccccCccceeeeeeeeecccCCcEEEEEee
Q 000654 554 DPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDAS 589 (1371)
Q Consensus 554 ~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~s 589 (1371)
.+. +..++..+ ..+|+|++|-
T Consensus 242 tGK--------------~L~eiklP-t~qitsccFg 262 (310)
T KOG4499|consen 242 TGK--------------ILLEIKLP-TPQITSCCFG 262 (310)
T ss_pred CCc--------------EEEEEEcC-CCceEEEEec
Confidence 543 11222323 5679999987
No 466
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=32.55 E-value=8.5e+02 Score=28.31 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=68.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeec-----CCccEEEEEEc--------------CC
Q 000654 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG-----HNARVWDCCLT--------------DS 319 (1371)
Q Consensus 259 I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~g-----h~~~I~~l~~s--------------~~ 319 (1371)
-+.|+++|.+.+-++....+...+||......... .+.+. ..+.. -....+.+.|+ +.
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~--~~~L~-vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLV--QDPLV-VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCC--ccceE-EEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 46799999999888888888999999873211100 01111 12221 12345555554 13
Q ss_pred EEEEEeCCCeEEEEeC--CCc----EEEEEeec-cCcCEEEEEEcCC--CCEEEEEE-CCCcEEEEEcCC
Q 000654 320 FIITAGEDCTCRVWGS--DGK----QLKMIKEH-IGRGIWRCLYDSL--SSLLVTAG-FDSAIKVHQFQA 379 (1371)
Q Consensus 320 ~L~Sgs~Dg~I~VWd~--~g~----~l~~l~~h-~~~~V~sl~~spd--g~~L~Tgg-~Dg~I~lwdl~~ 379 (1371)
.++.+++||+|.-|.. .-. ....+... .+.--..+++... +.+|..+. ..++|.++|-.-
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 5788999999999996 111 12222211 2212234565433 45665554 478999998743
No 467
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=31.70 E-value=6.6e+02 Score=30.64 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.8
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 000654 351 IWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 351 V~sl~~spdg~~L~Tgg~Dg~I~lwdl~ 378 (1371)
|.+++..+..+.|++...+|.|.+|++.
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 9999999888999999999999999994
No 468
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=31.01 E-value=3.8e+02 Score=28.22 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=26.5
Q ss_pred ccEEEEEEecCC-------cEEEEEcCCcEEEEEeecCCCceeEEeEeec
Q 000654 420 EYVRCLHLTSED-------TLYIATNHGYLYHTKLCDMDSVNWNKILQVS 462 (1371)
Q Consensus 420 ~~V~~lafs~d~-------~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~ 462 (1371)
..+..++|+|.| -+.+.|.+|.+..+.-.......|.++....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v~dvs 135 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRVADVS 135 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeeeeehh
Confidence 479999999955 2445678888875432221145576654433
No 469
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.79 E-value=4.1e+02 Score=36.39 Aligned_cols=66 Identities=9% Similarity=-0.065 Sum_probs=39.5
Q ss_pred CccEEEEEEc-CCEEEEEeCCCeEEEEeCCCcE-EEEEeeccCcCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 000654 308 NARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQ-LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 308 ~~~I~~l~~s-~~~L~Sgs~Dg~I~VWd~~g~~-l~~l~~h~~~~V~sl~~spdg~~L~Tgg~Dg~I~lwdl~~ 379 (1371)
...+.+..+. +.-++.+..-+.+-+|+..... ...+..... ..++++..++++-.||.+..||.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 198 EYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred ccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCC
Confidence 3344444443 4455555566666677662222 222221111 1178899999999999999999965
No 470
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=28.73 E-value=1e+03 Score=27.92 Aligned_cols=48 Identities=8% Similarity=-0.046 Sum_probs=33.1
Q ss_pred CCCEEEEEeCCCcEEEEEccCCcccCCCCceeeeceEeecCCccEEEEEEcCCEEEEEe
Q 000654 267 CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG 325 (1371)
Q Consensus 267 dg~~LaS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s~~~L~Sgs 325 (1371)
++++-++-+..|.+.-+|..+++. + ....-.+....++|.+.+++.+-
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~------e-----~Va~vpG~~rGL~f~G~llvVgm 259 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKF------Q-----PVAFLPGFTRGLAFAGDFAFVGL 259 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcE------E-----EEEECCCCCcccceeCCEEEEEe
Confidence 577778888889999999876654 2 22223345677888887776653
No 471
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=27.89 E-value=9.5e+02 Score=27.42 Aligned_cols=152 Identities=12% Similarity=0.011 Sum_probs=80.6
Q ss_pred EEEEEEecCCCCCCCCEEEEEeC-CcEEEEECCCCeEEEEEEeecCccEEEEEeeccccccCCCCcceeeEEEEECCCeE
Q 000654 21 SALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (1371)
Q Consensus 21 tavafs~~pd~~~~~~llaaG~d-g~I~Iwd~~sg~~l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV 99 (1371)
..|+-. || +..-+.+.. +.|-=.|..+|+... +....+..-++|..- ||| ..-++-+..-|
T Consensus 65 ~dvapa--pd----G~VWft~qg~gaiGhLdP~tGev~~-ypLg~Ga~Phgiv~g-------pdg----~~Witd~~~aI 126 (353)
T COG4257 65 FDVAPA--PD----GAVWFTAQGTGAIGHLDPATGEVET-YPLGSGASPHGIVVG-------PDG----SAWITDTGLAI 126 (353)
T ss_pred cccccC--CC----CceEEecCccccceecCCCCCceEE-EecCCCCCCceEEEC-------CCC----CeeEecCccee
Confidence 455666 66 556666663 667777888887643 333456678888888 888 34444333334
Q ss_pred EEEEeccCCCCCCCCCCccceeeeee-eeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEecCCc
Q 000654 100 KLFELNFELSPNSQYQPETCVNLSLV-QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (1371)
Q Consensus 100 ~vwdl~~~~~~~~~~~~~~~v~~~~~-~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~ 178 (1371)
.=.+-++.+ .+.. -.++.-.+......|.+ .|.+-.|+...-.=++ |..+ ..+..+..+.+
T Consensus 127 ~R~dpkt~e-------------vt~f~lp~~~a~~nlet~vfD~---~G~lWFt~q~G~yGrL-dPa~-~~i~vfpaPqG 188 (353)
T COG4257 127 GRLDPKTLE-------------VTRFPLPLEHADANLETAVFDP---WGNLWFTGQIGAYGRL-DPAR-NVISVFPAPQG 188 (353)
T ss_pred EEecCcccc-------------eEEeecccccCCCcccceeeCC---CccEEEeeccccceec-Cccc-CceeeeccCCC
Confidence 333433211 1111 11222334677777877 8887777653110011 1111 12233333444
Q ss_pred ceEEEEEeeccCCCCcEEEEEeCCCeEEEEEcc
Q 000654 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1371)
Q Consensus 179 ~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~~ 211 (1371)
...|.++. .++|.+-++.-.++.|-..|..
T Consensus 189 ~gpyGi~a---tpdGsvwyaslagnaiaridp~ 218 (353)
T COG4257 189 GGPYGICA---TPDGSVWYASLAGNAIARIDPF 218 (353)
T ss_pred CCCcceEE---CCCCcEEEEeccccceEEcccc
Confidence 44455554 6777777776666666666654
No 472
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=27.82 E-value=4.3e+02 Score=34.74 Aligned_cols=91 Identities=15% Similarity=0.263 Sum_probs=59.2
Q ss_pred CCcEEEEEeecCCCEEEEecCCCeEE--EEEcCcccccccccc------cccccccccccccccCCcCeEEEEEeecCCC
Q 000654 580 GARIMCLDASFEDEVLFCGDLRGNLV--LFPLLRDLLNDKSVA------LHVEVSPLNYFKGAHGISTVSTLSVAKLRSN 651 (1371)
Q Consensus 580 ~~~Itsl~~spdg~lLatGs~dGtI~--Iwd~~~~~~~~~~~~------~~~~l~p~~~~~g~hg~~~VTsV~f~~~~~~ 651 (1371)
+-.|.|+....+|+++..|-.|-+|+ .|...++-+...-.. ....+-|....++.|| ++|++++.. ..
T Consensus 181 GinV~civs~e~GrIFf~g~~d~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipg-etI~Ql~vD---qs 256 (1263)
T COG5308 181 GINVRCIVSEEDGRIFFGGENDPNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPG-ETIKQLAVD---QS 256 (1263)
T ss_pred CceeEEEEeccCCcEEEecCCCCCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcc-cchhheeec---cc
Confidence 35588888888999999999995554 222222211000000 0112334445567898 999999888 34
Q ss_pred ceEEEEEcCCCcEEEEEEecCCc
Q 000654 652 QTEIRSTGGDGCICYLEYDKDRE 674 (1371)
Q Consensus 652 ~~~L~T~g~DG~v~iw~l~~~~~ 674 (1371)
...|.+-+.-..||-|.+....+
T Consensus 257 Rg~ly~Lr~kS~Vray~itkngl 279 (1263)
T COG5308 257 RGLLYVLRKKSAVRAYSITKNGL 279 (1263)
T ss_pred ccceeeecccceeeeEeeecccc
Confidence 57788888889999999887654
No 473
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=27.60 E-value=1e+03 Score=27.55 Aligned_cols=194 Identities=11% Similarity=0.027 Sum_probs=113.2
Q ss_pred CCcEEEEEEEeecCCCcEEEEEECCCcEEEEECCCCeEEEEEec-CCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEEc
Q 000654 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1371)
Q Consensus 132 ~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~~~~~~~~~l~~-~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd~ 210 (1371)
.+-+.++.++. ++...+..+.-++|.|+.+......+.. +.....+.+.+ .|++...+..+.-+.+.|+
T Consensus 86 ~~l~~Dv~vse-----~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-----sGn~aYVadlddgfLivdv 155 (370)
T COG5276 86 RDLFADVRVSE-----EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-----SGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hhhhheeEecc-----cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-----cCCEEEEeeccCcEEEEEC
Confidence 46678888865 6777777788899999977544322221 11134444433 5788888887888888888
Q ss_pred ccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 000654 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1371)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWdl~~~~~ 290 (1371)
.. ..+.....++......-..++.| |++-..+..|+-+.|-|+.....
T Consensus 156 sd------------------------------pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s 203 (370)
T COG5276 156 SD------------------------------PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS 203 (370)
T ss_pred CC------------------------------CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC
Confidence 71 11233334444444444555554 45556666888899999998766
Q ss_pred cCCCCceeeeceEeecC---CccEEEEEEcCCEEEEEeCCCeEEEEeCCCcE-EEEEeeccCcCEEEE-EEcCCCCEEEE
Q 000654 291 KDSDSIEEVGSSVLYGH---NARVWDCCLTDSFIITAGEDCTCRVWGSDGKQ-LKMIKEHIGRGIWRC-LYDSLSSLLVT 365 (1371)
Q Consensus 291 ~~~~~~~~~~~~~~~gh---~~~I~~l~~s~~~L~Sgs~Dg~I~VWd~~g~~-l~~l~~h~~~~V~sl-~~spdg~~L~T 365 (1371)
+ ++.+| ...+.++..++++....--+--+.+-|.++.. ...+.......+.++ .|.-.+++...
T Consensus 204 P-----------vli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yv 272 (370)
T COG5276 204 P-----------VLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYV 272 (370)
T ss_pred C-----------eEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeee
Confidence 3 33333 22678888887766665556567777774322 222211111112232 22223555555
Q ss_pred EECCCcEEEEEcC
Q 000654 366 AGFDSAIKVHQFQ 378 (1371)
Q Consensus 366 gg~Dg~I~lwdl~ 378 (1371)
...+.-+.+-|.+
T Consensus 273 adga~gl~~idis 285 (370)
T COG5276 273 ADGAKGLPIIDIS 285 (370)
T ss_pred eccccCceeEecc
Confidence 5566666777764
No 474
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=27.45 E-value=1.7e+02 Score=37.23 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=25.0
Q ss_pred CEEEEEEcC----CCCEEEEEeCCCcEEEEEccCCcc
Q 000654 258 SIFRIEWSS----CGSKLVSVSDDRSARIWEVRAEYW 290 (1371)
Q Consensus 258 ~I~~v~~sp----dg~~LaS~s~Dg~VriWdl~~~~~ 290 (1371)
....++.+. +..+|++.+.|+++|+||+.++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 344555555 678999999999999999999766
No 475
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=27.05 E-value=1.6e+03 Score=29.82 Aligned_cols=24 Identities=4% Similarity=-0.035 Sum_probs=20.9
Q ss_pred CEEEEEeCCCcEEEEEEcCCcccc
Q 000654 485 DWVALGDGKGNMTIVRVVGDVHTP 508 (1371)
Q Consensus 485 ~lla~gs~dG~I~iwdi~~~~~~~ 508 (1371)
+.++.++.+|.+.++|..+++.+.
T Consensus 460 ~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 460 PALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred eEEEEECCCCEEEEEECCCCCEEe
Confidence 489999999999999999887654
No 476
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=26.59 E-value=2.8e+02 Score=29.26 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=25.1
Q ss_pred cEEEEEEEeec--CC-CcEEEEEECCCcEEEEECCC
Q 000654 134 WVFDVCFLKVC--NG-NRSLAIGCSDNSIRVWDISN 166 (1371)
Q Consensus 134 ~I~~v~fsp~~--~d-g~~Latgs~Dg~I~vWd~~~ 166 (1371)
.|.+++|+|.+ .+ +-+||+...++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999932 12 34788889999999998653
No 477
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=26.15 E-value=1.1e+03 Score=27.49 Aligned_cols=248 Identities=15% Similarity=0.155 Sum_probs=123.8
Q ss_pred cEEEEEeeccccccCCCCcceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccC-----CCCcEEEEEEE
Q 000654 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-----LSHWVFDVCFL 141 (1371)
Q Consensus 67 ~I~~i~~s~~~~~~~pdg~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~g-----h~~~I~~v~fs 141 (1371)
.-++|+++ |.+. ..++-.+.+...+||.......+.. ..++-++.. -....+.+.|+
T Consensus 24 N~WGia~~-------p~~~---~WVadngT~~~TlYdg~~~~~~g~~--------~~L~vtiP~~~~~~~~~~PTGiVfN 85 (336)
T TIGR03118 24 NAWGLSYR-------PGGP---FWVANTGTGTATLYVGNPDTQPLVQ--------DPLVVVIPAPPPLAAEGTPTGQVFN 85 (336)
T ss_pred ccceeEec-------CCCC---EEEecCCcceEEeecCCcccccCCc--------cceEEEecCCCCCCCCCCccEEEEe
Confidence 46889999 7761 3344445789999998732211111 122222221 12457777777
Q ss_pred eec-----CCC----cEEEEEECCCcEEEEECCCCeE-----EEEEecCCcceEE-EEEeeccCCCCcEEEEE-eCCCeE
Q 000654 142 KVC-----NGN----RSLAIGCSDNSIRVWDISNSSI-----ILEVHSPERCLLY-SMKLWGDNLEALRIASG-TIYNEI 205 (1371)
Q Consensus 142 p~~-----~dg----~~Latgs~Dg~I~vWd~~~~~~-----~~~l~~~~~~~v~-s~~~~~~s~d~~~Lasg-s~dg~I 205 (1371)
... ..+ ..++.+++||+|.=|...-+.. ...+.......+| .+++.. ...+.+|+++ -..++|
T Consensus 86 ~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~-~~~~~~LYaadF~~g~I 164 (336)
T TIGR03118 86 GSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGP-TGGGDYLYAANFRQGRI 164 (336)
T ss_pred CCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEee-cCCCceEEEeccCCCce
Confidence 410 011 2356788999999998633222 1222222223333 344432 2234555554 356889
Q ss_pred EEEEcccCCccccCCCCCCCCCCCCCC-CcceeeecccccceeeEEEEecccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000654 206 IVWKVDWEHVAPLLNSPEGNHAHGSSS-DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1371)
Q Consensus 206 ~vWd~~~~~~~~~~~~~~~~s~~~~~~-~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg~~LaS~s~Dg~VriWd 284 (1371)
-|+|-...+.... . .+. +.... ....+ -++.+.+ .-.|+-..-.+++..=+.+-.-|.|-++|
T Consensus 165 DVFd~~f~~~~~~-g---~F~-DP~iPagyAPF----------nIqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd 228 (336)
T TIGR03118 165 DVFKGSFRPPPLP-G---SFI-DPALPAGYAPF----------NVQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFT 228 (336)
T ss_pred EEecCccccccCC-C---Ccc-CCCCCCCCCCc----------ceEEECC-eEEEEEEecCCcccccccCCCcceEEEEc
Confidence 9988663221100 0 000 00000 00000 1111111 01111111233333334455567888888
Q ss_pred ccCCcccCCCCceeeeceEeecCCccEEEEEEc--------CCEEEEEeCCCeEEEEeC-CCcEEEEEeeccCc-----C
Q 000654 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--------DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-----G 350 (1371)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~gh~~~I~~l~~s--------~~~L~Sgs~Dg~I~VWd~-~g~~l~~l~~h~~~-----~ 350 (1371)
....-. +.+ .-.+.-...|.++.. +.+|+---.||+|.+||. +|+.+..+....+. +
T Consensus 229 ~~G~l~------~r~---as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~G 299 (336)
T TIGR03118 229 LNGQLL------RRV---ASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDG 299 (336)
T ss_pred CCCcEE------EEe---ccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecC
Confidence 766422 111 122333445777664 456666667999999998 78877777654432 4
Q ss_pred EEEEEEcC
Q 000654 351 IWRCLYDS 358 (1371)
Q Consensus 351 V~sl~~sp 358 (1371)
+|.|+|-.
T Consensus 300 LWgL~fGn 307 (336)
T TIGR03118 300 LWSLTFGN 307 (336)
T ss_pred eEEeeeCC
Confidence 78898865
No 478
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.75 E-value=2.2e+02 Score=34.26 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=62.9
Q ss_pred cCcEEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeE----EEEEEeecCccEEEEEeeccccccCCCCcceeeEE
Q 000654 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL----IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1371)
Q Consensus 17 ~~~Vtavafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~----l~~~~~~~~~~I~~i~~s~~~~~~~pdg~~~~~~l 91 (1371)
.|+|.++.|| +| .+.+|+-- +.+|.+++-...+. ..+.+.. ...|+|..|+ .. .-+
T Consensus 66 ~G~I~SIkFS--lD----nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k-~~~IlGF~W~-------~s-----~e~ 126 (657)
T KOG2377|consen 66 KGEIKSIKFS--LD----NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK-NANILGFCWT-------SS-----TEI 126 (657)
T ss_pred CCceeEEEec--cC----cceEEEEecCceEEEEecCCCchhhHHHHHhccC-cceeEEEEEe-------cC-----eeE
Confidence 4789999999 99 67777754 79999999743221 2333332 2369999998 33 466
Q ss_pred EEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEe
Q 000654 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (1371)
Q Consensus 92 a~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp 142 (1371)
|.-.+.-+-+|..... ...++..+.|.-.|.--.|.+
T Consensus 127 A~i~~~G~e~y~v~pe--------------krslRlVks~~~nvnWy~yc~ 163 (657)
T KOG2377|consen 127 AFITDQGIEFYQVLPE--------------KRSLRLVKSHNLNVNWYMYCP 163 (657)
T ss_pred EEEecCCeEEEEEchh--------------hhhhhhhhhcccCccEEEEcc
Confidence 6666777888877642 233444556777788888887
No 479
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=25.34 E-value=2.1e+02 Score=21.55 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=19.7
Q ss_pred ecccCCEEEEEEcCCCCEEEEEeC-C--CcEEEE
Q 000654 253 VGHEGSIFRIEWSSCGSKLVSVSD-D--RSARIW 283 (1371)
Q Consensus 253 ~gH~~~I~~v~~spdg~~LaS~s~-D--g~VriW 283 (1371)
....+.-....|+|||++|+-++. + |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556778899999998876554 3 555554
No 480
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.04 E-value=1e+03 Score=26.84 Aligned_cols=140 Identities=9% Similarity=0.007 Sum_probs=71.8
Q ss_pred ccEEEEEEecCC-cEEEEEcCCcEEEEEeecCCCceeEEeEeecCCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEE
Q 000654 420 EYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTI 498 (1371)
Q Consensus 420 ~~V~~lafs~d~-~llv~t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~i 498 (1371)
+.+.+++|.|+| .+++.+..|+.+..++...... -..|-.|++++-
T Consensus 74 galSairf~~dG~~fiav~DtG~wfeg~i~rDa~g---------------------------------rl~Gl~dgr~~p 120 (340)
T COG4246 74 GALSAIRFLPDGSQFIAVTDTGHWFEGKIQRDANG---------------------------------RLAGLTDGRLTP 120 (340)
T ss_pred cchheeEeccCCceeEEEeecCceEEEEEEeccCC---------------------------------Ccccccccceee
Confidence 467889999999 6777788887654433222111 123334555543
Q ss_pred EEEcCCccccceeeeeeeccCcccceeEEEEeecCCCcEEEEEcCCCcEEEEeCCCCCCccccccCccceeeeeeeeecc
Q 000654 499 VRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSC 578 (1371)
Q Consensus 499 wdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L~s~s~dg~I~lWdi~~~~~~~~~~~~~~~~l~l~~~~~~~ 578 (1371)
..=.+++.. ..+|..+.++- +. .+|..+++=-.+.+|-+|-+.......++ .......|.+ ...
T Consensus 121 m~d~~Gqpi-----~~K~e~DaEGL------Av-rdG~~~VsfEr~hRI~iyp~~p~~~~~p~---rqlp~~~Pa~-eLr 184 (340)
T COG4246 121 MRDLDGQPI-----QEKWEVDAEGL------AV-RDGDALVSFERDHRIWIYPVPPFAGWGPP---RQLPAPKPAT-ELR 184 (340)
T ss_pred cccCCCCCC-----cchhccccccc------eE-ecCceEEEeeccceeEEeccCCccCCCCc---ccCCCCCchh-hcc
Confidence 222222222 24455554541 11 37788888777777777665532221111 1112223333 235
Q ss_pred cCCcEEEEEeec-CCC---EEEEecCCCeEEEEE
Q 000654 579 FGARIMCLDASF-EDE---VLFCGDLRGNLVLFP 608 (1371)
Q Consensus 579 h~~~Itsl~~sp-dg~---lLatGs~dGtI~Iwd 608 (1371)
+...+-.++..| +|. -+++++..+..+.=+
T Consensus 185 ~N~G~Eaia~a~~~gp~aga~VVvsEks~d~~~n 218 (340)
T COG4246 185 DNGGLEAIAAAPVNGPLAGALVVVSEKSEDKAGN 218 (340)
T ss_pred cCCCeeeeeecCCCCCcccceEEEeecchhhhcc
Confidence 666777777654 332 345666665544433
No 481
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=24.84 E-value=1.6e+02 Score=20.96 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.4
Q ss_pred ccEEEEEEcCCEEEEEeCCCeEEEEe
Q 000654 309 ARVWDCCLTDSFIITAGEDCTCRVWG 334 (1371)
Q Consensus 309 ~~I~~l~~s~~~L~Sgs~Dg~I~VWd 334 (1371)
..|.+++..+.+++.+...+.+|+|.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 45788888899999999999999984
No 482
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=24.59 E-value=1.8e+03 Score=29.41 Aligned_cols=62 Identities=6% Similarity=0.042 Sum_probs=41.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCcEEEEEee---ccCcCEEEEEEcCCCC--EEEEEECCCcEEEEEcCC
Q 000654 318 DSFIITAGEDCTCRVWGSDGKQLKMIKE---HIGRGIWRCLYDSLSS--LLVTAGFDSAIKVHQFQA 379 (1371)
Q Consensus 318 ~~~L~Sgs~Dg~I~VWd~~g~~l~~l~~---h~~~~V~sl~~spdg~--~L~Tgg~Dg~I~lwdl~~ 379 (1371)
.++|+.|..-..+..+-+..++.+...- .....+++..|.-+|. +++++..+|.|++.....
T Consensus 1102 ~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efLv~G~~lyf~~~Da~gnih~l~Y~P 1168 (1319)
T COG5161 1102 KNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFLVTGNELYFLCCDAKGNIHGLTYSP 1168 (1319)
T ss_pred hheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhhccCCeeEEEEEcCCCCEEEEecCC
Confidence 5778777766667776665555544321 2222466777766655 788899999999988743
No 483
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=24.44 E-value=1.8e+03 Score=29.43 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=43.5
Q ss_pred CcEEEEEECCCcEEEEECCCCeEEEEEecCCcc-------eEEEEEeecc-------------CCCCcEEEEEeCCCeEE
Q 000654 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERC-------LLYSMKLWGD-------------NLEALRIASGTIYNEII 206 (1371)
Q Consensus 147 g~~Latgs~Dg~I~vWd~~~~~~~~~l~~~~~~-------~v~s~~~~~~-------------s~d~~~Lasgs~dg~I~ 206 (1371)
+..|+.++.++.|.-.|..+|+.+-++...... .+..+.++.. ...+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777888899999999999987766532210 0112233221 11344788888899998
Q ss_pred EEEcccCC
Q 000654 207 VWKVDWEH 214 (1371)
Q Consensus 207 vWd~~~~~ 214 (1371)
-.|.++++
T Consensus 274 ALDA~TGk 281 (764)
T TIGR03074 274 ALDADTGK 281 (764)
T ss_pred EEECCCCC
Confidence 88887443
No 484
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=23.07 E-value=2.1e+03 Score=29.68 Aligned_cols=170 Identities=14% Similarity=0.140 Sum_probs=89.0
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeecCCccceeeccCCCccEEEEEEecCCcEEE
Q 000654 356 YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1371)
Q Consensus 356 ~spdg~~L~Tgg~Dg~I~lwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~lafs~d~~llv 435 (1371)
+-++...+++-+.+|.|+--+...-..+.. + .-.+. ....+.....+..+....+++
T Consensus 512 lI~~E~v~v~lS~~GyIKr~~~~~~~~q~~-----------g--~~~~~----------~ke~D~i~~~~~~~T~d~LL~ 568 (957)
T PRK13979 512 LIVVEDVVITLSNEGFIKRIPLKSYNRSNS-----------N--VEDIE----------YREGDFNKFLIQSNTKDTLLI 568 (957)
T ss_pred cCCCcceEEEEecCCEEEEccccccccccc-----------c--ccccc----------cCCCCceEEEEEEcCCCEEEE
Confidence 346777889999999998876532110000 0 00000 001111122223334457888
Q ss_pred EEcCCcEEEEEeecCCCceeE-------EeEe-ec-CCccEEEEeecCCCCCCCCCCCCEEEEEeCCCcEEEEEEcCCcc
Q 000654 436 ATNHGYLYHTKLCDMDSVNWN-------KILQ-VS-EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVH 506 (1371)
Q Consensus 436 ~t~~G~i~~~~l~~~~~~~w~-------~i~~-~~-~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~ 506 (1371)
.|+.|+++...+++.....|. .+.. .. .+..|..+-.... ......++..+..|.|+-..+..-..
T Consensus 569 FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~e-----f~~~~~lv~~Tk~G~VKrt~L~ef~~ 643 (957)
T PRK13979 569 FTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIED-----FTPQKDFIFITDSGGIKKTSLDKFVT 643 (957)
T ss_pred EECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEecc-----CCCCCEEEEEECCCeEEEEehhhccc
Confidence 899999999888876655442 1111 11 2344444332222 13345788999999999988764332
Q ss_pred ccceeeeeeeccCcccceeEEEEeecC-CCcEEEEEcCCCcEEEEeCCCC
Q 000654 507 TPQLSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKGRLKLWQLCDP 555 (1371)
Q Consensus 507 ~~~~~~~~~~~~~~~~~il~~~~~~s~-d~~~L~s~s~dg~I~lWdi~~~ 555 (1371)
..+..... .......++.+..+... +...++..+..|....++.+..
T Consensus 644 ~r~~~~ai--kL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eV 691 (957)
T PRK13979 644 NYTKLMAL--KLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPEL 691 (957)
T ss_pred cccceEEE--EcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHC
Confidence 22111112 22223445554443322 2256777777887777876543
No 485
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.44 E-value=1.2e+03 Score=29.07 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEEec------------------CCcceEEEEEeeccCCCCcEEEEEeCCCeEEEEE
Q 000654 148 RSLAIGCSDNSIRVWDISNSSIILEVHS------------------PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (1371)
Q Consensus 148 ~~Latgs~Dg~I~vWd~~~~~~~~~l~~------------------~~~~~v~s~~~~~~s~d~~~Lasgs~dg~I~vWd 209 (1371)
+.++-+-.| .+..||.+.-..+..--. +...+.+.+.-.-.++.|..++-.+.+|.+.++=
T Consensus 53 rN~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 53 RNVVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred cchhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEc
Q ss_pred cccCCccccCCCCCCCCCCCCCCCcceeeecccccceeeEEEEecccCCEEEEEEcCCC---CEEEEEeCCCcEEEEEcc
Q 000654 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG---SKLVSVSDDRSARIWEVR 286 (1371)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v~~spdg---~~LaS~s~Dg~VriWdl~ 286 (1371)
.+ ..-+++...+++..-+.....-+..+..-. ..-.+..++|+|+. ..|..-+.|..||+||+.
T Consensus 132 p~------------rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 132 PK------------RWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLS 198 (741)
T ss_pred hh------------hcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccCCceEEEEecCcEEEEEecC
Q ss_pred CCc
Q 000654 287 AEY 289 (1371)
Q Consensus 287 ~~~ 289 (1371)
..+
T Consensus 199 ~~t 201 (741)
T KOG4460|consen 199 EPT 201 (741)
T ss_pred Ccc
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=20.52 E-value=2.1e+03 Score=28.79 Aligned_cols=117 Identities=13% Similarity=0.171 Sum_probs=66.7
Q ss_pred cEEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCe-----EEEEEEeecC---------ccEEEEEeeccccccCCCC
Q 000654 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT-----LIRPFQVFHG---------IRLHGISCNFINCTEGSVS 84 (1371)
Q Consensus 19 ~Vtavafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~-----~l~~~~~~~~---------~~I~~i~~s~~~~~~~pdg 84 (1371)
+...|+|+ |. ..+.+.++-..|...||++.... .+.......+ ..-..|.|. ++-
T Consensus 147 ~~aDv~Fn--P~--~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~-------~~~ 215 (765)
T PF10214_consen 147 PHADVAFN--PW--DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV-------SDS 215 (765)
T ss_pred ccceEEec--cC--ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec-------CCC
Confidence 56889999 86 33344444557999999992111 1111100111 122355665 443
Q ss_pred cceeeEEEEECCCeEEEEEeccCCCCCCCCCCccceeeeeeeeccCCCCcEEEEEEEeecCCCcEEEEEECCCcEEEEEC
Q 000654 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (1371)
Q Consensus 85 ~~~~~~la~~gd~sV~vwdl~~~~~~~~~~~~~~~v~~~~~~~l~gh~~~I~~v~fsp~~~dg~~Latgs~Dg~I~vWd~ 164 (1371)
..|+++....+.++|++... .... -......++|.++.-+|.+. +..++..+ ..|...++
T Consensus 216 ----~~lLv~~r~~l~~~d~~~~~------------~~~~-l~~~~~~~~IlDv~~~~~~~-~~~FiLTs--~eiiw~~~ 275 (765)
T PF10214_consen 216 ----NRLLVCNRSKLMLIDFESNW------------QTEY-LVTAKTWSWILDVKRSPDNP-SHVFILTS--KEIIWLDV 275 (765)
T ss_pred ----CEEEEEcCCceEEEECCCCC------------ccch-hccCCChhheeeEEecCCcc-ceEEEEec--CeEEEEEc
Confidence 57888888999999998643 0111 12234567999999988211 23333332 45766677
Q ss_pred CC
Q 000654 165 SN 166 (1371)
Q Consensus 165 ~~ 166 (1371)
..
T Consensus 276 ~~ 277 (765)
T PF10214_consen 276 KS 277 (765)
T ss_pred cC
Confidence 65
Done!