Query 000654
Match_columns 1371
No_of_seqs 628 out of 4583
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 16:26:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000654.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_427-430//hhsearch_pdb/000654hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 1.0 1 1 476.4 73.6 558 16-904 15-577 (577)
2 1nr0_A Actin interacting prote 1.0 1 1 468.5 66.4 588 6-905 7-609 (611)
3 1nr0_A Actin interacting prote 1.0 1 1 466.7 70.0 506 3-672 38-568 (611)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 454.9 63.8 627 16-905 614-1247(1249)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 450.3 71.4 526 55-904 7-536 (577)
6 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 444.6 57.8 535 59-907 610-1158(1249)
7 1pgu_A Actin interacting prote 1.0 1 1 432.1 64.0 582 5-907 6-614 (615)
8 1pgu_A Actin interacting prote 1.0 1 1 412.7 61.6 527 3-832 38-614 (615)
9 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 397.3 64.9 705 129-1106 14-786 (902)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 378.3 63.0 533 6-680 6-673 (902)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=476.39 Aligned_cols=558 Identities=18% Similarity=0.282 Sum_probs=433.9
Q ss_pred CCCCEEEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEEE
Q ss_conf 018479999974189889989999990-9919999989995997998552832899995023354589874101399999
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtaiafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~i~~~~~~~~~~V~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|.++|+|++|+ || +++|++|+ |+.|+|||. ++++++++.+|.+ .|.+++|+ |++ .+|+++
T Consensus 15 H~~~V~~~a~s--pd----g~~las~~~d~~v~iWd~-~~~~~~~l~gh~~-~V~~l~fs-------pdg----~~las~ 75 (577)
T 2ymu_A 15 HSSSVRGVAFS--PD----GQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVWGVAFS-------PDG----QTIASA 75 (577)
T ss_dssp CSSCEEEEEEC--TT----SSCEEEEETTSEEEEECT-TSCEEEEEECCSS-CEEEEEEC-------TTS----SEEEEE
T ss_pred CCCCEEEEEEC--CC----CCEEEEEECCCEEEEEEC-CCCEEEEEECCCC-CEEEEEEC-------CCC----CEEEEE
T ss_conf 99857999998--99----899999938998999979-9978999968989-98999998-------999----999999
Q ss_pred C-CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 7-996999990668899988888631000155642578876899999732289969999978994999998899289998
Q 000654 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1371)
Q Consensus 95 g-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~I~~i~fsp~~~dg~~Latgs~Dg~I~iWd~~~~~~~~~l 173 (1371)
+ |++|++||.. .+.+..+.+|.+.|.+++|+| ++.+|++++.|+.+++|+...... ...
T Consensus 76 ~~d~~i~vWd~~----------------~~~~~~~~~~~~~v~~~~~s~---d~~~l~~~~~d~~~~~~~~~~~~~-~~~ 135 (577)
T 2ymu_A 76 SDDKTVKLWNRN----------------GQLLQTLTGHSSSVRGVAFSP---DGQTIASASDDKTVKLWNRNGQLL-QTL 135 (577)
T ss_dssp ETTSCEEEEETT----------------SCEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTCCEE-EEE
T ss_pred ECCCEEEEEECC----------------CCEEEEEECCCCCEEEEEECC---CCCEEEEECCCCCEEECCCCCCEE-EEC
T ss_conf 698979999899----------------978999978999889999989---999899980798335202355200-110
Q ss_pred ECCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEE
Q ss_conf 04874217999962069888599999589919999803687655689999877789888862025313466405599994
Q 000654 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1371)
Q Consensus 174 ~~~~~~~i~si~~~~~s~d~~~Lasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~~~l~ 253 (1371)
..+ ...++.+.+ +++...++.+..++.+++|+.. ........
T Consensus 136 ~~~-~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~ 177 (577)
T 2ymu_A 136 TGH-SSSVWGVAF---SPDGQTIASASDDKTVKLWNRN----------------------------------GQLLQTLT 177 (577)
T ss_dssp CCC-SSCEEEEEE---CTTSSCEEEEETTSEEEEECTT----------------------------------SCEEEEEE
T ss_pred CCC-CCCEEEEEE---ECCCCCCEECCCCCCEECCCCC----------------------------------EEEEEECC
T ss_conf 477-774355542---0377632002555310000000----------------------------------00000026
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECEEEECCCCCEEEEEEC--CCEEEEEECCCEEE
Q ss_conf 5348799999969999899996899299998367831378871364104753388528999985--99899995899099
Q 000654 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1371)
Q Consensus 254 gH~~~I~~I~~spd~~~LvS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~i~~s--~~~Lvtgs~Dg~I~ 331 (1371)
.|...|..+.++|++.++++++.|+.|++|+...... ..+.+|...|.+++|+ +.+|++++.|+.++
T Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~-----------~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~ 246 (577)
T 2ymu_A 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE-----------EEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE-----------EEEECCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 8776356654169977899985999899994999689-----------99946889889999979999999991899899
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 99279948999920259577999994999899999879949999949887543357776200168741799541697542
Q 000654 332 VWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (1371)
Q Consensus 332 IWd~~g~~i~~l~~h~~~~V~sia~spdg~~LvTgg~Dg~I~iwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~ 411 (1371)
+|+.+++.+..+.+|.. .|++++|+|++.+|++++.|+.+++|+..+..++.+
T Consensus 247 ~w~~~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~-------------------------- 299 (577)
T 2ymu_A 247 LWNRNGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL-------------------------- 299 (577)
T ss_dssp EECTTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE--------------------------
T ss_pred EEECCCCEEEEEECCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE--------------------------
T ss_conf 99599979999806889-879999968999999995999799994899589997--------------------------
Q ss_pred EEECCCCCCCEEEEEEECCCCEEEE-ECCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEE
Q ss_conf 5521577863799999129909999-918938999961178750489674058954899730589998888999799999
Q 000654 412 IRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (1371)
Q Consensus 412 ~~~~~~~~~~V~~iafs~d~~llv~-t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~g 490 (1371)
.+|...|.+++|+|++.++++ +.++.+..|+ ...... ..... +..++.++.+ .+++.+++++
T Consensus 300 ----~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~---~~~~~~-~~~~~-~~~~v~~~~~--------s~~g~~l~~~ 362 (577)
T 2ymu_A 300 ----TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN---RNGQHL-QTLTG-HSSSVWGVAF--------SPDGQTIASA 362 (577)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE---TTSCEE-EEECC-CSSCEEEEEE--------CTTSSEEEEE
T ss_pred ----ECCCCCEEEEEECCCCCEEEEEECCCEEEEEE---CCCCEE-EEEEC-CCCCEEEEEE--------CCCCCEEEEE
T ss_conf ----06889769999999999999996999599996---999725-78747-8897799999--------8999999999
Q ss_pred ECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEE
Q ss_conf 18986999998278335511245653157544133789954199819999838991999947999986433467642011
Q 000654 491 DGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVF 570 (1371)
Q Consensus 491 s~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~Lvs~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~ 570 (1371)
+.+|.+++|+... .... .+ . .+...+.. +++++++++|++++.|+.|++|+....
T Consensus 363 ~~dg~v~~~~~~~-~~~~----~~--~-~~~~~v~~--~~~s~dg~~l~~~~~d~~v~~~~~~~~--------------- 417 (577)
T 2ymu_A 363 SDDKTVKLWNRNG-QLLQ----TL--T-GHSSSVRG--VAFSPDGQTIASASDDKTVKLWNRNGQ--------------- 417 (577)
T ss_dssp ETTSEEEEEETTC-CEEE----EE--E-CCSSCEEE--EEECTTSSCEEEEETTSEEEEECTTCC---------------
T ss_pred ECCCEEEEECCCC-CEEE----EE--C-CCCCCEEE--EEECCCCCEEEEEECCCEEEEEECCCC---------------
T ss_conf 6999899990899-7899----85--2-78897489--999899999999949998999969997---------------
Q ss_pred EEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 12234023598189998314997899853888099997685322443434410016642112345876769999964089
Q 000654 571 LVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRS 650 (1371)
Q Consensus 571 l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~~~~~~~ 650 (1371)
+... ...|...|++++|+|++++|++++.|++|++|+.... . ...+. .|. ..|++++|+ +
T Consensus 418 ~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~--------~------~~~~~-~~~-~~v~~~~~s---p 477 (577)
T 2ymu_A 418 LLQT-LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--------L------LQTLT-GHS-SSVRGVAFS---P 477 (577)
T ss_dssp EEEE-EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC--------E------EEEEE-CCS-SCEEEEEEC---T
T ss_pred EEEE-ECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC--------E------EEEEC-CCC-CCEEEEEEC---C
T ss_conf 8989-6288997579999899999999939998999979998--------8------99972-789-977899996---9
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 82299997499749999994598630232010000011057687389955856632897022763899927664099875
Q 000654 651 NQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQI 730 (1371)
Q Consensus 651 d~~~l~T~g~DG~I~iW~l~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~d~~~~~~v~Gf~s~~~viWn~~~~~el~~v 730 (1371)
++.+|++++.||.|++|+.+. .. +
T Consensus 478 d~~~las~~~d~~i~iw~~~~-~~--------------------------------~----------------------- 501 (577)
T 2ymu_A 478 DGQTIASASDDKTVKLWNRNG-QL--------------------------------L----------------------- 501 (577)
T ss_dssp TSCEEEEEETTSEEEEEETTS-CE--------------------------------E-----------------------
T ss_pred CCCEEEEEECCCEEEEECCCC-CE--------------------------------E-----------------------
T ss_conf 999999991989799993999-78--------------------------------9-----------------------
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 22684542311247879984299999454899999641258677656333347886405586852166434543223478
Q 000654 731 PCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSAL 810 (1371)
Q Consensus 731 ~CGG~hR~w~~~~~~~~~~~~~fa~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~HgreI~~v~~s~~~~~~~~~~~~~~~ 810 (1371)
. ...+|...|++|+|+|+
T Consensus 502 -------------------------------~------------------~~~~h~~~v~~l~~s~d------------- 519 (577)
T 2ymu_A 502 -------------------------------Q------------------TLTGHSSSVRGVAFSPD------------- 519 (577)
T ss_dssp -------------------------------E------------------EEECCSSCEEEEEECTT-------------
T ss_pred -------------------------------E------------------EEECCCCCEEEEEECCC-------------
T ss_conf -------------------------------9------------------98679999899999189-------------
Q ss_pred CCCEEEEECCCCCEEEEEEECCCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99819998007771999986189976520000244447542123544200011232235887432234653346898779
Q 000654 811 NKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFL 890 (1371)
Q Consensus 811 ~~~~~i~TGseDgtIri~~~~~~~~~~~~~~~l~~H~~gsaV~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 890 (1371)
+++|+||++|++|+||.+. ...+.++.+|. ..|++++|. +|+.+
T Consensus 520 --g~~l~s~~~dg~v~lwd~~-----~~~~~~~~~h~--~~v~~~~fs---------------------------~dg~~ 563 (577)
T 2ymu_A 520 --GQTIASASDDKTVKLWNRN-----GQLLQTLTGHS--SSVWGVAFS---------------------------PDGQT 563 (577)
T ss_dssp --SSCEEEEETTSEEEEECTT-----SCEEEEEECCS--SCEEEEEEC---------------------------TTSSC
T ss_pred --CCEEEEEECCCEEEEEECC-----CCEEEEECCCC--CCEEEEEEC---------------------------CCCCE
T ss_conf --9999999896999999699-----97898971888--887899996---------------------------89999
Q ss_pred EEEECCCCEEEEEE
Q ss_conf 99952441489999
Q 000654 891 LISVGAKRVLTSWL 904 (1371)
Q Consensus 891 l~S~g~d~~i~iW~ 904 (1371)
|+|+|.|+.|++|.
T Consensus 564 l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 564 IASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSCEEEEC
T ss_pred EEEEECCCEEEEEC
T ss_conf 99990899999969
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=468.52 Aligned_cols=588 Identities=13% Similarity=0.117 Sum_probs=435.1
Q ss_pred EEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCC
Q ss_conf 99993788700184799999741898899899999909919999989995997998552832899995023354589874
Q 000654 6 LSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVST 85 (1371)
Q Consensus 6 V~iWdl~~g~h~~~Vtaiafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg~~i~~~~~~~~~~V~~i~~s~~~~~~~pdg~ 85 (1371)
..+|-.....+.+.+.+++|+ || +++++++.++.|++|++.+++.+..+.+|.. .|.+++|+ |+|
T Consensus 7 ~~~~~~~~~~~~g~~~~~~~s--pd----g~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~-~v~~~~~s-------pdg- 71 (611)
T 1nr0_A 7 TALFPSLPRTARGTAVVLGNT--PA----GDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH-QTTVAKTS-------PSG- 71 (611)
T ss_dssp EEEECCCCCCCTTCCCCCEEC--TT----SSEEEEEETTEEEEEETTCSSCCEEECCCSS-CEEEEEEC-------TTS-
T ss_pred CCEECCCCCCCCCCEEEEEEC--CC----CCEEEECCCCEEEEECCCCCCCCEEECCCCC-CEEEEEEC-------CCC-
T ss_conf 627989997406823697667--99----9979967999799945787242737658998-65999999-------999-
Q ss_pred CEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECC----CCEE
Q ss_conf 1013999997-9969999906688999888886310001556425788768999997322899699999789----9499
Q 000654 86 RVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIR 160 (1371)
Q Consensus 86 ~~~~~la~~g-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~I~~i~fsp~~~dg~~Latgs~D----g~I~ 160 (1371)
.++++++ |++|+|||+.... ......+.+|.+.|.+++|+| +++.|++++.+ +.|+
T Consensus 72 ---~~lasg~~d~~v~lWd~~~~~-------------~~~~~~~~~~~~~v~~v~fs~---dg~~l~~~~~~~~~~~~v~ 132 (611)
T 1nr0_A 72 ---YYCASGDVHGNVRIWDTTQTT-------------HILKTTIPVFSGPVKDISWDS---ESKRIAAVGEGRERFGHVF 132 (611)
T ss_dssp ---SEEEEEETTSEEEEEESSSTT-------------CCEEEEEECSSSCEEEEEECT---TSCEEEEEECCSSCSEEEE
T ss_pred ---CEEEEEECCCCEEEEECCCCC-------------CEEEEEECCCCCCEEEEEECC---CCCEEEEEECCCCCEEEEE
T ss_conf ---689999489978994898984-------------156676225578448999899---9997999989977366999
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEEEECCCCCCC-EEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9998899289998048742179999620698885-999995899199998036876556899998777898888620253
Q 000654 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1371)
Q Consensus 161 iWd~~~~~~~~~l~~~~~~~i~si~~~~~s~d~~-~Lasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i 239 (1371)
+||. +.....+..+. ..+.++.| +|++. .|++|+.|+.|++|+..
T Consensus 133 ~wd~--~~~~~~l~gh~-~~v~~v~f---~p~~~~~l~s~s~D~~v~lwd~~---------------------------- 178 (611)
T 1nr0_A 133 LFDT--GTSNGNLTGQA-RAMNSVDF---KPSRPFRIISGSDDNTVAIFEGP---------------------------- 178 (611)
T ss_dssp ETTT--CCBCBCCCCCS-SCEEEEEE---CSSSSCEEEEEETTSCEEEEETT----------------------------
T ss_pred EEEC--CCCCCEECCCC-CCCEEEEE---CCCCCEEEEEEECCCEEEEEECC----------------------------
T ss_conf 9638--99763254788-98369998---89998299999289809999799----------------------------
Q ss_pred CCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEEC--EEEECCCCCEEEEEEC
Q ss_conf 13466405599994534879999996999989999689929999836783137887136410--4753388528999985
Q 000654 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT 317 (1371)
Q Consensus 240 ~~~~~~~~~~~~l~gH~~~I~~I~~spd~~~LvS~s~Dg~VriWdl~~~~~~~~~~~~~~~~--~~~~gh~~~I~~i~~s 317 (1371)
..+....+.+|...|.+++|+|++++|++++.|++|++||+..++. ...+.. ....+|...|++++|+
T Consensus 179 -----~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~-----~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 179 -----PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-----TGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp -----TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEECBCTTSSSCSSSSCEEEEEEC
T ss_pred -----CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-----EEEECCCCCCCCCCCCCEEEEEEC
T ss_conf -----9757665200257169999979999899998999199988999828-----665136643235667878999997
Q ss_pred --CCEEEEEECCCEEEEEEC-CCCEEEEEEECCC--CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf --998999958990999927-9948999920259--57799999499989999987994999994988754335777620
Q 000654 318 --DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG--RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAK 392 (1371)
Q Consensus 318 --~~~Lvtgs~Dg~I~IWd~-~g~~i~~l~~h~~--~~V~sia~spdg~~LvTgg~Dg~I~iwdl~~~~~~~l~~~~~~~ 392 (1371)
+.+|++++.|++|++||+ +++++..+..+.. ..+..+.| ++..+++++.|+.+++|+.....
T Consensus 249 pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~----------- 315 (611)
T 1nr0_A 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGS----------- 315 (611)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTE-----------
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEEEEECCCCC-----------
T ss_conf 99999999908980999968887013440478876640689997--38879999589968999688997-----------
Q ss_pred CCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCCEEEE-ECCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 01687417995416975425521577863799999129909999-91893899996117875048967405895489973
Q 000654 393 EFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMD 471 (1371)
Q Consensus 393 ~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~iafs~d~~llv~-t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld 471 (1371)
....+.+|...|.+++|+|++.++++ +.++.+..| +.............+...+.++.
T Consensus 316 ------------------~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~W---d~~~~~~~~~~~~~h~~~v~~~~ 374 (611)
T 1nr0_A 316 ------------------IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW---DISTGISNRVFPDVHATMITGIK 374 (611)
T ss_dssp ------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE---ETTTCCEEECSSCSCSSCEEEEE
T ss_pred ------------------CCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEE---ECCCCCEEEECCCCCCCEEEEEE
T ss_conf ------------------446983788888999991899989999589849999---78879256321667765078999
Q ss_pred ECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEE
Q ss_conf 05899988889997999991898699999827833551124565315754413378995419981999983899199994
Q 000654 472 LLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQ 551 (1371)
Q Consensus 472 ~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~Lvs~s~dg~I~iWd 551 (1371)
+. .+..+++++.|+.+++|++................ .... .+++++++..++++ .++.+++|+
T Consensus 375 ~s---------~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~----~~~~--~~~~s~dg~~~~~~-~~~~v~~~~ 438 (611)
T 1nr0_A 375 TT---------SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS----SQPL--GLAVSADGDIAVAA-CYKHIAIYS 438 (611)
T ss_dssp EC---------TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECS----SCEE--EEEECTTSSCEEEE-ESSEEEEEE
T ss_pred EC---------CCCCEEEEECCCCEEEEECCCCCCCCCCEEEEECC----CCCC--EEEEECCCCEEEEE-ECCEEEEEE
T ss_conf 87---------89969999848966895468854356521200148----9970--79980799699999-676399984
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999864334676420111223402359818999831499789985388809999768532244343441001664211
Q 000654 552 LCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYF 631 (1371)
Q Consensus 552 i~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~ 631 (1371)
.. . ...+ .|...+.+++|+||+++|++|+.|++|++|++.... +.....
T Consensus 439 ~~----------------~-~~~~--~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~-----------~~~~~~- 487 (611)
T 1nr0_A 439 HG----------------K-LTEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-----------VSEVKT- 487 (611)
T ss_dssp TT----------------E-EEEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-----------EEEEEE-
T ss_pred CC----------------C-EEEE--ECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCC-----------EEEEEC-
T ss_conf 89----------------4-3464--068895499992899899996899739999945992-----------224101-
Q ss_pred CCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 23458767699999640898229999749974999999459863023201000001105768738995585663289702
Q 000654 632 KGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGF 711 (1371)
Q Consensus 632 ~g~hg~~~VTsV~~~~~~~d~~~l~T~g~DG~I~iW~l~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~d~~~~~~v~Gf 711 (1371)
..|. ..|++|+|+ +++.+|++++.|+.+++|++...... . .
T Consensus 488 -~~h~-~~v~~v~fs---pdg~~las~s~d~~v~~w~~~~~~~~---~-----~-------------------------- 528 (611)
T 1nr0_A 488 -IVHP-AEITSVAFS---NNGAFLVATDQSRKVIPYSVANNFEL---A-----H-------------------------- 528 (611)
T ss_dssp -EECS-SCEEEEEEC---TTSSEEEEEETTSCEEEEEGGGTTEE---S-----C--------------------------
T ss_pred -CCCC-CCEEEEEEC---CCCCEEEEECCCCCEEEEECCCCCCE---E-----E--------------------------
T ss_conf -5778-860799998---99998999948998999885778722---3-----2--------------------------
Q ss_pred CCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 27638999276640998752268454231124787998429999945489999964125867765633334788640558
Q 000654 712 ASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHT 791 (1371)
Q Consensus 712 ~s~~~viWn~~~~~el~~v~CGG~hR~w~~~~~~~~~~~~~fa~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~HgreI~~ 791 (1371)
....++|...|++
T Consensus 529 -------------------------------------------------------------------~~~~~~H~~~V~~ 541 (611)
T 1nr0_A 529 -------------------------------------------------------------------TNSWTFHTAKVAC 541 (611)
T ss_dssp -------------------------------------------------------------------CCCCCCCSSCEEE
T ss_pred -------------------------------------------------------------------EEEEEECCCCEEE
T ss_conf -------------------------------------------------------------------1026404664258
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCEECCCCC-CCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 6852166434543223478998199980077719999861899765200002444-475421235442000112322358
Q 000654 792 LCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEH-VGGSAVRSICFVSEINQISAVVDN 870 (1371)
Q Consensus 792 v~~s~~~~~~~~~~~~~~~~~~~~i~TGseDgtIri~~~~~~~~~~~~~~~l~~H-~~gsaV~~i~~~~~~~~~~~~~~~ 870 (1371)
++|+|+ +++|+||+.|++|+||.+..... ....++.+| . ..|++++|.+
T Consensus 542 v~fspd---------------g~~lasgs~D~~v~lW~~~~~~~--~~~~~~~~h~~--~~v~~v~fs~----------- 591 (611)
T 1nr0_A 542 VSWSPD---------------NVRLATGSLDNSVIVWNMNKPSD--HPIIIKGAHAM--SSVNSVIWLN----------- 591 (611)
T ss_dssp EEECTT---------------SSEEEEEETTSCEEEEETTCTTS--CCEEETTSSTT--SCEEEEEEEE-----------
T ss_pred EEECCC---------------CCEEEEEECCCCEEEEECCCCCC--CCCHHHCCCCC--CCEEEEEECC-----------
T ss_conf 998998---------------99799997997299997887555--63264446765--6711899858-----------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf 87432234653346898779999524414899999
Q 000654 871 VSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLL 905 (1371)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~ll~S~g~d~~i~iW~~ 905 (1371)
++. |+|+|.|+.|++|.+
T Consensus 592 ----------------d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 592 ----------------ETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp ----------------TTE-EEEEETTSCEEEEEC
T ss_pred ----------------CCE-EEEECCCCCEEEEEC
T ss_conf ----------------997-999528877899844
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=466.65 Aligned_cols=506 Identities=15% Similarity=0.150 Sum_probs=376.8
Q ss_pred CCCEEEEECCCCC-------CCCCEEEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCC--EEEEEEEEECCCCEEEEE
Q ss_conf 9649999378870-------018479999974189889989999990-991999998999--599799855283289999
Q 000654 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPFQVFHGIRLHGIS 72 (1371)
Q Consensus 3 D~tV~iWdl~~g~-------h~~~Vtaiafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg--~~i~~~~~~~~~~V~~i~ 72 (1371)
+++|++|++.++. |.++|++++|+ |+ +++|++|+ |++|+|||+.++ .+...+..|.+ .|.+++
T Consensus 38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~s--pd----g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~-~v~~v~ 110 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS--PS----GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG-PVKDIS 110 (611)
T ss_dssp TTEEEEEETTCSSCCEEECCCSSCEEEEEEC--TT----SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS-CEEEEE
T ss_pred CCEEEEECCCCCCCCEEECCCCCCEEEEEEC--CC----CCEEEEEECCCCEEEEECCCCCCEEEEEECCCCC-CEEEEE
T ss_conf 9979994578724273765899865999999--99----9689999489978994898984156676225578-448999
Q ss_pred EECCCCCCCCCCCCEEEEEEEEC-C----CEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCC
Q ss_conf 50233545898741013999997-9----969999906688999888886310001556425788768999997322899
Q 000654 73 CNFINCTEGSVSTRVTFEVALFG-E----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1371)
Q Consensus 73 ~s~~~~~~~pdg~~~~~~la~~g-d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~I~~i~fsp~~~dg 147 (1371)
|+ |++ ..+++.+ + +.|++|+.. .....+.+|.+.|++++|+| ++
T Consensus 111 fs-------~dg----~~l~~~~~~~~~~~~v~~wd~~-----------------~~~~~l~gh~~~v~~v~f~p---~~ 159 (611)
T 1nr0_A 111 WD-------SES----KRIAAVGEGRERFGHVFLFDTG-----------------TSNGNLTGQARAMNSVDFKP---SR 159 (611)
T ss_dssp EC-------TTS----CEEEEEECCSSCSEEEEETTTC-----------------CBCBCCCCCSSCEEEEEECS---SS
T ss_pred EC-------CCC----CEEEEEECCCCCEEEEEEEECC-----------------CCCCEECCCCCCCEEEEECC---CC
T ss_conf 89-------999----9799998997736699996389-----------------97632547889836999889---99
Q ss_pred C-EEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 6-999997899499999889928999804874217999962069888599999589919999803687655689999877
Q 000654 148 R-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1371)
Q Consensus 148 ~-~Latgs~Dg~I~iWd~~~~~~~~~l~~~~~~~i~si~~~~~s~d~~~Lasgs~dg~I~iWd~~~~~~~~~~~~~~~~s 226 (1371)
. .|++++.|++|++||...++....+..|.. .+.+++| +|++.+|++++.|+.|++|+..
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-~V~~v~f---spdg~~las~s~D~~i~lwd~~--------------- 220 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRY---NPDGSLFASTGGDGTIVLYNGV--------------- 220 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------
T ss_pred CEEEEEEECCCEEEEEECCCCEEEEEECCCCC-CEEEEEE---CCCCCEEEEEECCCCEEEEECC---------------
T ss_conf 82999992898099997999757665200257-1699999---7999989999899919998899---------------
Q ss_pred CCCCCCCCCEEEECCCCCCEEEEEEEE-------CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEE
Q ss_conf 789888862025313466405599994-------5348799999969999899996899299998367831378871364
Q 000654 227 AHGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (1371)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~~~~~~l~-------gH~~~I~~I~~spd~~~LvS~s~Dg~VriWdl~~~~~~~~~~~~~~ 299 (1371)
.+.....+. +|.+.|.+++|+|++++|++++.|++|++||+..++. ...+
T Consensus 221 ------------------~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-----~~~~ 277 (611)
T 1nr0_A 221 ------------------DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-----EKTI 277 (611)
T ss_dssp ------------------TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEE
T ss_pred ------------------CCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-----EEEE
T ss_conf ------------------98286651366432356678789999979999999990898099996888701-----3440
Q ss_pred ECEEEECCCCCEEEEEECCCEEEEEECCCEEEEEEC-CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 104753388528999985998999958990999927-9948999920259577999994999899999879949999949
Q 000654 300 GSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 300 ~~~~~~gh~~~I~~i~~s~~~Lvtgs~Dg~I~IWd~-~g~~i~~l~~h~~~~V~sia~spdg~~LvTgg~Dg~I~iwdl~ 378 (1371)
. ....+......+.|.+..+++++.|+.+++|+. .+++...+.+|.. .|++++|+|++++|++++.|+.|++|++.
T Consensus 278 ~--~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 278 P--VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp E--CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred C--CCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCC-CEEEEEEECCCCEEEEEECCCCEEEEECC
T ss_conf 4--78876640689997388799995899689996889974469837888-88999991899989999589849999788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEE
Q ss_conf 88754335777620016874179954169754255215778637999991299099999189389999611787504896
Q 000654 379 AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (1371)
Q Consensus 379 ~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~iafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i 458 (1371)
....... ....|...+.+++|++++.++.++.++.+..|.+.......-...
T Consensus 355 ~~~~~~~----------------------------~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~ 406 (611)
T 1nr0_A 355 TGISNRV----------------------------FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV 406 (611)
T ss_dssp TCCEEEC----------------------------SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred CCCEEEE----------------------------CCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEE
T ss_conf 7925632----------------------------166776507899987899699998489668954688543565212
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCEE
Q ss_conf 74058954899730589998888999799999189869999982783355112456531575441337899541998199
Q 000654 459 LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFI 538 (1371)
Q Consensus 459 ~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L 538 (1371)
. .........+.+ .+++..++++ .++.+++|+ .+. .. .. . ....+ ..+++++++++|
T Consensus 407 ~-~~~~~~~~~~~~--------s~dg~~~~~~-~~~~v~~~~--~~~-~~----~~--~--~~~~v--~~va~spdg~~l 463 (611)
T 1nr0_A 407 A-NKLSSQPLGLAV--------SADGDIAVAA-CYKHIAIYS--HGK-LT----EV--P--ISYNS--SCVALSNDKQFV 463 (611)
T ss_dssp E-EECSSCEEEEEE--------CTTSSCEEEE-ESSEEEEEE--TTE-EE----EE--E--CSSCE--EEEEECTTSCEE
T ss_pred E-EECCCCCCEEEE--------ECCCCEEEEE-ECCEEEEEE--CCC-EE----EE--E--CCCCC--EEEEEECCCCEE
T ss_conf 0-014899707998--------0799699999-676399984--894-34----64--0--68895--499992899899
Q ss_pred EEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf 99838991999947999986433467642011122340235981899983149978998538880999976853224434
Q 000654 539 FTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKS 618 (1371)
Q Consensus 539 vs~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~ 618 (1371)
++++.|+.|++|++.... +..... ..|...|++++|+|++++|++|+.|++|++|++.+..
T Consensus 464 asgs~D~~v~lwd~~~~~------------~~~~~~--~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~----- 524 (611)
T 1nr0_A 464 AVGGQDSKVHVYKLSGAS------------VSEVKT--IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF----- 524 (611)
T ss_dssp EEEETTSEEEEEEEETTE------------EEEEEE--EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT-----
T ss_pred EEECCCCEEEEEECCCCC------------EEEEEC--CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC-----
T ss_conf 996899739999945992------------224101--5778860799998999989999489989998857787-----
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 344100166421-123458767699999640898229999749974999999459
Q 000654 619 VALHVEVSPLNY-FKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1371)
Q Consensus 619 ~~~~~~l~p~~~-~~g~hg~~~VTsV~~~~~~~d~~~l~T~g~DG~I~iW~l~~~ 672 (1371)
. + ... ..+.|. ..|++|+|+ +++.+|+|++.||+|++|+++.+
T Consensus 525 --~---~--~~~~~~~~H~-~~V~~v~fs---pdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 525 --E---L--AHTNSWTFHT-AKVACVSWS---PDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp --E---E--SCCCCCCCCS-SCEEEEEEC---TTSSEEEEEETTSCEEEEETTCT
T ss_pred --C---E--EEEEEEEECC-CCEEEEEEC---CCCCEEEEEECCCCEEEEECCCC
T ss_conf --2---2--3210264046-642589989---98997999979972999978875
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=454.85 Aligned_cols=627 Identities=14% Similarity=0.191 Sum_probs=424.6
Q ss_pred CCCCEEEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEEE
Q ss_conf 018479999974189889989999990-9919999989995997998552832899995023354589874101399999
Q 000654 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1371)
Q Consensus 16 h~~~Vtaiafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~i~~~~~~~~~~V~~i~~s~~~~~~~pdg~~~~~~la~~ 94 (1371)
|.+.|++++|+ |+ ++++++|+ ++.|++||+.+++.+..+..|.+ .|.+++|+ |++ ..++++
T Consensus 614 h~~~v~~~~~s--~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~-~v~~~~~s-------~~~----~~l~s~ 675 (1249)
T 3sfz_A 614 HTDAVYHACFS--QD----GQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFS-------SDD----SYIATC 675 (1249)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC-------TTS----SEEEEE
T ss_pred CCCCEEEEEEC--CC----CCEEEEEECCCEEEEEECCCCCEEEEECCCCC-CEEEEEEE-------CCC----CEEEEE
T ss_conf 66648999987--99----99899994889499999899978887606777-78999992-------699----989998
Q ss_pred -CCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf -7996999990668899988888631000155642578876899999732289969999978994999998899289998
Q 000654 95 -GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1371)
Q Consensus 95 -gdg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~I~~i~fsp~~~dg~~Latgs~Dg~I~iWd~~~~~~~~~l 173 (1371)
.|++|++||+.+ .+.+..+.+|...|.+++|+| +.++.++++++.|+.|++||+.++.....+
T Consensus 676 ~~d~~v~vwd~~~---------------~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~ 739 (1249)
T 3sfz_A 676 SADKKVKIWDSAT---------------GKLVHTYDEHSEQVNCCHFTN-KSNHLLLATGSNDFFLKLWDLNQKECRNTM 739 (1249)
T ss_dssp ETTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECS-SSSCCEEEEEETTSCEEEEETTSSSEEEEE
T ss_pred ECCCEEEEEECCC---------------CCEEEEECCCCCCEEEEEEEC-CCCCEEEEEEECCCEEEEEECCCCCHHHEE
T ss_conf 1899599987799---------------936899958997379999840-899659999808970999989996342201
Q ss_pred ECCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEE
Q ss_conf 04874217999962069888599999589919999803687655689999877789888862025313466405599994
Q 000654 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1371)
Q Consensus 174 ~~~~~~~i~si~~~~~s~d~~~Lasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~~~l~ 253 (1371)
..+.. .+.++.+ ++++.++++++.||.|++||+..+..... +..... .........
T Consensus 740 ~~h~~-~v~~~~~---sp~~~~l~s~s~dg~v~vwd~~~~~~~~~------------------~~~~~~--~~~~~~~~~ 795 (1249)
T 3sfz_A 740 FGHTN-SVNHCRF---SPDDELLASCSADGTLRLWDVRSANERKS------------------INVKRF--FLSSEDPPE 795 (1249)
T ss_dssp CCCSS-CEEEEEE---CSSTTEEEEEESSSEEEEEEGGGTEEEEE------------------EECCCC--C--------
T ss_pred CCCCC-CEEEEEE---ECCCCEEEEEECCCEEEEEECCCCCCCCE------------------ECCCCC--CCCCCCCCC
T ss_conf 27779-7889999---25999899997898599996888865530------------------202321--024677644
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECEEEECCCCCEEEEEEC--CCEEEEEECCCEEE
Q ss_conf 5348799999969999899996899299998367831378871364104753388528999985--99899995899099
Q 000654 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1371)
Q Consensus 254 gH~~~I~~I~~spd~~~LvS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~~gh~~~I~~i~~s--~~~Lvtgs~Dg~I~ 331 (1371)
.+...+.+++|+|++..+++++ ++.+.+|++..+.. .. ....+|...+.+++|+ +.++++++.|+.++
T Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~-----~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 865 (1249)
T 3sfz_A 796 DVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGL-----LA----EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 865 (1249)
T ss_dssp CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCE-----EE----EEECSSSSCCCEEEECSSTTEEEEECSSSCEE
T ss_pred CCCCEEEEEEECCCCCEEEEEC-CCCEEEEEECCCCC-----EE----EECCCCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 5650179999978998899975-89599999568972-----35----77478777607999827888899994798699
Q ss_pred EEEC-CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 9927-99489999202595779999949998999998799499999498875-433577762001687417995416975
Q 000654 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLP-GSLESHPEAKEFNGRTEIFSIKIPNFS 409 (1371)
Q Consensus 332 IWd~-~g~~i~~l~~h~~~~V~sia~spdg~~LvTgg~Dg~I~iwdl~~~~~-~~l~~~~~~~~~~~~~~i~s~~~~~~~ 409 (1371)
+|++ ++..+..+.+|.. .|++++|+|++.+|++++.|+.+++|++..... .....
T Consensus 866 vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~---------------------- 922 (1249)
T 3sfz_A 866 LWNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVL---------------------- 922 (1249)
T ss_dssp EEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSE----------------------
T ss_pred EEECCCCCEEEECCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC----------------------
T ss_conf 998678956532278766-568999989999899995897289887466520102113----------------------
Q ss_pred CCEEECCCCCCCEEEEEEECCCCEEEE-ECCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEE
Q ss_conf 425521577863799999129909999-9189389999611787504896740589548997305899988889997999
Q 000654 410 EQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVA 488 (1371)
Q Consensus 410 ~~~~~~~~~~~~V~~iafs~d~~llv~-t~~G~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla 488 (1371)
.......+.++...++. .....+..+ ........ ......+.++.+ ++++.+++
T Consensus 923 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~i~~~~~--------sp~g~~l~ 977 (1249)
T 3sfz_A 923 ----------KQEIDVVFQENETMVLAVDNIRGLQLI---AGKTGQID----YLPEAQVSCCCL--------SPHLEYVA 977 (1249)
T ss_dssp ----------EEEEEEEEETTEEEEEEEESSSSEEEE---EESSCCEE----EECCSCEEEEEE--------CTTSSEEE
T ss_pred ----------CCEEEEEECCCCCEEEEECCCCCEEEE---ECCCCEEE----ECCCCCEEEEEE--------CCCCCEEE
T ss_conf ----------310368975998689981377624898---44765089----725672789999--------58997799
Q ss_pred EEECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCE
Q ss_conf 99189869999982783355112456531575441337899541998199998389919999479999864334676420
Q 000654 489 LGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNN 568 (1371)
Q Consensus 489 ~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~Lvs~s~dg~I~iWdi~~~~~~~~~~~~~~~~ 568 (1371)
+|+.+|.|++|++.++..... ...+...+.. +++++++++|++++.|+.|++|++.....
T Consensus 978 ~g~~~g~i~i~d~~~~~~~~~-------~~~h~~~v~~--l~~s~dg~~l~s~~~dg~i~vwd~~~~~~----------- 1037 (1249)
T 3sfz_A 978 FGDEDGAIKIIELPNNRVFSS-------GVGHKKAVRH--IQFTADGKTLISSSEDSVIQVWNWQTGDY----------- 1037 (1249)
T ss_dssp EEETTSCCEEEETTTTSCEEE-------CCCCSSCCCC--EEECSSSSCEEEECSSSBEEEEETTTTEE-----------
T ss_pred EECCCCCEEEEECCCCCEEEE-------CCCCCCCEEE--EEECCCCCEEEEECCCCEEEEEECCCCCE-----------
T ss_conf 986999889997578723443-------0367771689--99989999899986998799998799966-----------
Q ss_pred EEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 11122340235981899983149978998538880999976853224434344100166421123458767699999640
Q 000654 569 VFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKL 648 (1371)
Q Consensus 569 l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~~~~~ 648 (1371)
. ....|...|.++.+++++ .+++++.||+|++|++.++. +...+. .|. ..|+++.|+
T Consensus 1038 ---~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~-------------~~~~~~-~~~-~~v~~~~~s-- 1094 (1249)
T 3sfz_A 1038 ---V--FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGR-------------IERDFT-CHQ-GTVLSCAIS-- 1094 (1249)
T ss_dssp ---E--CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTC-------------CCEEEE-CCS-SCCCCEEEC--
T ss_pred ---E--EEECCCCCEEEEEECCCC-CEEEEECCCCEEEEECCCCC-------------EEEEEC-CCC-CCEEEEEEC--
T ss_conf ---8--985278738999990899-58999788968998889886-------------558874-668-848999998--
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEE
Q ss_conf 89822999974997499999945986302320100000110576873899558566328970227638999276640998
Q 000654 649 RSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVV 728 (1371)
Q Consensus 649 ~~d~~~l~T~g~DG~I~iW~l~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~d~~~~~~v~Gf~s~~~viWn~~~~~el~ 728 (1371)
+++.++++++.||.+++|++..+.....+.. ....+..+.+++ ++.+++.|..++.+.+|+..+...+.
T Consensus 1095 -~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~-----h~~~v~~~~~s~-----dg~~lat~~~dg~i~vwd~~~~~~~~ 1163 (1249)
T 3sfz_A 1095 -SDATKFSSTSADKTAKIWSFDLLSPLHELKG-----HNGCVRCSAFSL-----DGILLATGDDNGEIRIWNVSDGQLLH 1163 (1249)
T ss_dssp -SSSSSCEEECCSSCCCEECSSSSSCSBCCCC-----CSSCEEEEEECS-----SSSEEEEEETTSCCCEEESSSSCCCC
T ss_pred -CCCCEEEEECCCCCEEEEECCCCCEEEEECC-----CCCCEEEEEECC-----CCCEEEEEECCCEEEEEECCCCCEEE
T ss_conf -9999899984999489987898500125506-----877679999979-----99989998289979999889994578
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 75226845423112478799842999994548999996412586776563333478864055868521664345432234
Q 000654 729 QIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKS 808 (1371)
Q Consensus 729 ~v~CGG~hR~w~~~~~~~~~~~~~fa~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~HgreI~~v~~s~~~~~~~~~~~~~ 808 (1371)
... ++ ........|...|++++|+++
T Consensus 1164 ~~~------~~-------------------------------------~~~~~~~~~~~~v~~l~fs~d----------- 1189 (1249)
T 3sfz_A 1164 SCA------PI-------------------------------------SVEEGTATHGGWVTDVCFSPD----------- 1189 (1249)
T ss_dssp CCC------CC-------------------------------------C-------CCSCCCEEEECTT-----------
T ss_pred EEC------CC-------------------------------------CCCCCCCCCCCEEEEEEECCC-----------
T ss_conf 851------44-------------------------------------444210256742899999789-----------
Q ss_pred CCCCCEEEEECCCCCEEEEEEECCCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78998199980077719999861899765200002444475421235442000112322358874322346533468987
Q 000654 809 ALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENP 888 (1371)
Q Consensus 809 ~~~~~~~i~TGseDgtIri~~~~~~~~~~~~~~~l~~H~~gsaV~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (1371)
+.++++++ |+|++|.+.. +.....+..|. ..|++++|. +++
T Consensus 1190 ----g~~l~s~~--g~v~vwd~~~----g~~~~~~~~~~--~~i~~~~~s---------------------------~dg 1230 (1249)
T 3sfz_A 1190 ----SKTLVSAG--GYLKWWNVAT----GDSSQTFYTNG--TNLKKIHVS---------------------------PDF 1230 (1249)
T ss_dssp ----SSCEEEES--SSEEEBCSSS----CBCCCCCCCSS--CCCCCCEEC---------------------------SSS
T ss_pred ----CCEEEECC--CEEEEEECCC----CCEEEEEECCC--CCCCEEEEC---------------------------CCC
T ss_conf ----99899779--8599989888----95004640047--753279997---------------------------898
Q ss_pred EEEEEECCCCEEEEEEE
Q ss_conf 79999524414899999
Q 000654 889 FLLISVGAKRVLTSWLL 905 (1371)
Q Consensus 889 ~ll~S~g~d~~i~iW~~ 905 (1371)
.++++++.|+.|.+|++
T Consensus 1231 ~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1231 RTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp CCEEEECTTCCEEEECC
T ss_pred CEEEEECCCCEEEEEEE
T ss_conf 77999668817999764
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=450.34 Aligned_cols=526 Identities=17% Similarity=0.284 Sum_probs=377.1
Q ss_pred EEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 59979985528328999950233545898741013999997-99699999066889998888863100015564257887
Q 000654 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1371)
Q Consensus 55 ~~i~~~~~~~~~~V~~i~~s~~~~~~~pdg~~~~~~la~~g-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~ 133 (1371)
++.+.+++|.+ .|.+++|+ ||| .++++++ |++|+|||.. .+.+..+.+|.+
T Consensus 7 ~e~~~L~GH~~-~V~~~a~s-------pdg----~~las~~~d~~v~iWd~~----------------~~~~~~l~gh~~ 58 (577)
T 2ymu_A 7 KERNRLEAHSS-SVRGVAFS-------PDG----QTIASASDDKTVKLWNRN----------------GQLLQTLTGHSS 58 (577)
T ss_dssp CEEEEECCCSS-CEEEEEEC-------TTS----SCEEEEETTSEEEEECTT----------------SCEEEEEECCSS
T ss_pred EEEEEECCCCC-CEEEEEEC-------CCC----CEEEEEECCCEEEEEECC----------------CCEEEEEECCCC
T ss_conf 89439878998-57999998-------998----999999389989999799----------------978999968989
Q ss_pred CEEEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 68999997322899699999789949999988992899980487421799996206988859999958991999980368
Q 000654 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1371)
Q Consensus 134 ~I~~i~fsp~~~dg~~Latgs~Dg~I~iWd~~~~~~~~~l~~~~~~~i~si~~~~~s~d~~~Lasgs~dg~I~iWd~~~~ 213 (1371)
.|++++|+| ++++|++++.|++|++||. +++.+..+..+.. .+.++.+ +|++.+|++++.|+.+++|+..
T Consensus 59 ~V~~l~fsp---dg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~-~v~~~~~---s~d~~~l~~~~~d~~~~~~~~~-- 128 (577)
T 2ymu_A 59 SVWGVAFSP---DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAF---SPDGQTIASASDDKTVKLWNRN-- 128 (577)
T ss_dssp CEEEEEECT---TSSEEEEEETTSCEEEEET-TSCEEEEECCCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT--
T ss_pred CEEEEEECC---CCCEEEEEECCCEEEEEEC-CCCEEEEEECCCC-CEEEEEE---CCCCCEEEEECCCCCEEECCCC--
T ss_conf 989999989---9999999969897999989-9978999978999-8899999---8999989998079833520235--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCC
Q ss_conf 76556899998777898888620253134664055999945348799999969999899996899299998367831378
Q 000654 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1371)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~~~l~gH~~~I~~I~~spd~~~LvS~s~Dg~VriWdl~~~~~~~~ 293 (1371)
........+|...+..+.++|++..+++++.++.+++|+......
T Consensus 129 --------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 173 (577)
T 2ymu_A 129 --------------------------------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL--- 173 (577)
T ss_dssp --------------------------------CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE---
T ss_pred --------------------------------CCEEEECCCCCCCEEEEEEECCCCCCEECCCCCCEECCCCCEEEE---
T ss_conf --------------------------------520011047777435554203776320025553100000000000---
Q ss_pred CCCEEEECEEEECCCCCEEEEEEC--CCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 871364104753388528999985--998999958990999927994899992025957799999499989999987994
Q 000654 294 DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1371)
Q Consensus 294 ~~~~~~~~~~~~gh~~~I~~i~~s--~~~Lvtgs~Dg~I~IWd~~g~~i~~l~~h~~~~V~sia~spdg~~LvTgg~Dg~ 371 (1371)
.....|...++++.++ +.++++++.|+.+++|+.+++.+..+..|.. .|.+++|+|++.+|++++.|+.
T Consensus 174 --------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~ 244 (577)
T 2ymu_A 174 --------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKT 244 (577)
T ss_dssp --------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSC
T ss_pred --------EECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEECCCC-CEEEEEECCCCCEEEEEECCCE
T ss_conf --------0026877635665416997789998599989999499968999946889-8899999799999999918998
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCCEEEE-ECCCCEEEEEEECC
Q ss_conf 99999498875433577762001687417995416975425521577863799999129909999-91893899996117
Q 000654 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDM 450 (1371)
Q Consensus 372 I~iwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~iafs~d~~llv~-t~~G~i~~~~l~~~ 450 (1371)
+++|+..++.+..+ .+|...|.+++|+|++..+++ +.++.+..| +.
T Consensus 245 i~~w~~~~~~~~~~------------------------------~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w---~~ 291 (577)
T 2ymu_A 245 VKLWNRNGQLLQTL------------------------------TGHSSSVNGVAFRPDGQTIASASDDKTVKLW---NR 291 (577)
T ss_dssp EEEECTTSCEEEEE------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEE---ET
T ss_pred EEEEECCCCEEEEE------------------------------ECCCCCEEEEEECCCCCEEEEEECCCEEEEE---EC
T ss_conf 99995999799998------------------------------0688987999996899999999599979999---48
Q ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEEEE
Q ss_conf 87504896740589548997305899988889997999991898699999827833551124565315754413378995
Q 000654 451 DSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWC 530 (1371)
Q Consensus 451 ~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~ 530 (1371)
.. .......++ ..++.++.+ .+++.++++++.||.|++|++...... . ...+...+.. ++
T Consensus 292 ~~-~~~~~~~~h-~~~v~~~~~--------~~~~~~l~t~~~d~~i~~w~~~~~~~~-------~-~~~~~~~v~~--~~ 351 (577)
T 2ymu_A 292 NG-QLLQTLTGH-SSSVWGVAF--------SPDGQTIASASDDKTVKLWNRNGQHLQ-------T-LTGHSSSVWG--VA 351 (577)
T ss_dssp TS-CEEEEECCC-SSCEEEEEE--------CTTSSEEEEEETTSCEEEEETTSCEEE-------E-ECCCSSCEEE--EE
T ss_pred CC-CEEEEEECC-CCCEEEEEE--------CCCCCEEEEEECCCEEEEEECCCCEEE-------E-EECCCCCEEE--EE
T ss_conf 99-589997068-897699999--------999999999969995999969997257-------8-7478897799--99
Q ss_pred ECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECC
Q ss_conf 41998199998389919999479999864334676420111223402359818999831499789985388809999768
Q 000654 531 KSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (1371)
Q Consensus 531 ~s~d~~~Lvs~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~ 610 (1371)
+++++++|++++.++.+++|+.... +... ...|...|++++|+|++++|++|+.|+.|++|+..
T Consensus 352 ~s~~g~~l~~~~~dg~v~~~~~~~~---------------~~~~-~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 352 FSPDGQTIASASDDKTVKLWNRNGQ---------------LLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTCC---------------EEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred ECCCCCEEEEEECCCEEEEECCCCC---------------EEEE-ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 9899999999969998999908997---------------8998-52788974899998999999999499989999699
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEE
Q ss_conf 53224434344100166421123458767699999640898229999749974999999459863023201000001105
Q 000654 611 RDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLI 690 (1371)
Q Consensus 611 ~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~~~~~~~d~~~l~T~g~DG~I~iW~l~~~~~~~~~~~~~~v~~~~~i 690 (1371)
.. ....+. .|. ..|+++.|+ +++.+|++++.||.+++|+++.. .
T Consensus 416 ~~--------------~~~~~~-~~~-~~v~~~~~s---~d~~~l~~~~~d~~v~~w~~~~~-~---------------- 459 (577)
T 2ymu_A 416 GQ--------------LLQTLT-GHS-SSVWGVAFS---PDDQTIASASDDKTVKLWNRNGQ-L---------------- 459 (577)
T ss_dssp CC--------------EEEEEE-CCS-SCEEEEEEC---TTSSEEEEEETTSEEEEEETTSC-E----------------
T ss_pred CC--------------EEEEEC-CCC-CCEEEEEEC---CCCCEEEEECCCCEEEEEECCCC-E----------------
T ss_conf 97--------------898962-889-975799998---99999999939998999979998-8----------------
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECC
Q ss_conf 76873899558566328970227638999276640998752268454231124787998429999945489999964125
Q 000654 691 QSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISN 770 (1371)
Q Consensus 691 ~~~~~~~~~~d~~~~~~v~Gf~s~~~viWn~~~~~el~~v~CGG~hR~w~~~~~~~~~~~~~fa~~k~~~i~~~~~~~~~ 770 (1371)
+
T Consensus 460 ----------------~--------------------------------------------------------------- 460 (577)
T 2ymu_A 460 ----------------L--------------------------------------------------------------- 460 (577)
T ss_dssp ----------------E---------------------------------------------------------------
T ss_pred ----------------E---------------------------------------------------------------
T ss_conf ----------------9---------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCEECCCCCCCCC
Q ss_conf 86776563333478864055868521664345432234789981999800777199998618997652000024444754
Q 000654 771 GERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGS 850 (1371)
Q Consensus 771 ~~~~~~~~~l~~~~HgreI~~v~~s~~~~~~~~~~~~~~~~~~~~i~TGseDgtIri~~~~~~~~~~~~~~~l~~H~~gs 850 (1371)
....+|..+|++++|+|+ +.+|++|++|++|+||... ......+.+|. .
T Consensus 461 ---------~~~~~~~~~v~~~~~spd---------------~~~las~~~d~~i~iw~~~-----~~~~~~~~~h~--~ 509 (577)
T 2ymu_A 461 ---------QTLTGHSSSVRGVAFSPD---------------GQTIASASDDKTVKLWNRN-----GQLLQTLTGHS--S 509 (577)
T ss_dssp ---------EEEECCSSCEEEEEECTT---------------SCEEEEEETTSEEEEEETT-----SCEEEEEECCS--S
T ss_pred ---------EEECCCCCCEEEEEECCC---------------CCEEEEEECCCEEEEECCC-----CCEEEEEECCC--C
T ss_conf ---------997278997789999699---------------9999999198979999399-----97899986799--9
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 212354420001123223588743223465334689877999952441489999
Q 000654 851 AVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWL 904 (1371)
Q Consensus 851 aV~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~S~g~d~~i~iW~ 904 (1371)
.|++++|. +++.+|++++.|+.|++|.
T Consensus 510 ~v~~l~~s---------------------------~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 510 SVRGVAFS---------------------------PDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp CEEEEEEC---------------------------TTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEEC---------------------------CCCCEEEEEECCCEEEEEE
T ss_conf 98999991---------------------------8999999998969999996
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=444.60 Aligned_cols=535 Identities=14% Similarity=0.169 Sum_probs=343.4
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEE
Q ss_conf 9985528328999950233545898741013999997-996999990668899988888631000155642578876899
Q 000654 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1371)
Q Consensus 59 ~~~~~~~~~V~~i~~s~~~~~~~pdg~~~~~~la~~g-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~I~~ 137 (1371)
.+..|.+ .|.+++|+ |++ .++++++ |++|++|++.+ .+.+..+.+|.+.|.+
T Consensus 610 ~~~~h~~-~v~~~~~s-------~~~----~~l~s~~~d~~i~vw~~~~---------------~~~~~~~~~h~~~v~~ 662 (1249)
T 3sfz_A 610 VVRPHTD-AVYHACFS-------QDG----QRIASCGADKTLQVFKAET---------------GEKLLDIKAHEDEVLC 662 (1249)
T ss_dssp EECCCSS-CEEEEEEC-------TTS----SEEEEEETTSCEEEEETTT---------------CCEEEEECCCSSCEEE
T ss_pred EEECCCC-CEEEEEEC-------CCC----CEEEEEECCCEEEEEECCC---------------CCEEEEECCCCCCEEE
T ss_conf 8716666-48999987-------999----9899994889499999899---------------9788876067777899
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 99973228996999997899499999889928999804874217999962069888599999589919999803687655
Q 000654 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1371)
Q Consensus 138 i~fsp~~~dg~~Latgs~Dg~I~iWd~~~~~~~~~l~~~~~~~i~si~~~~~s~d~~~Lasgs~dg~I~iWd~~~~~~~~ 217 (1371)
++|+| ++.+|++++.|+.|++||+.+++.+..+..+.. .+.++.+.+. .+..++++|+.|+.|++||+.
T Consensus 663 ~~~s~---~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~-~~~~~l~sg~~d~~v~vwd~~------ 731 (1249)
T 3sfz_A 663 CAFSS---DDSYIATCSADKKVKIWDSATGKLVHTYDEHSE-QVNCCHFTNK-SNHLLLATGSNDFFLKLWDLN------ 731 (1249)
T ss_dssp EEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSS-SSCCEEEEEETTSCEEEEETT------
T ss_pred EEEEC---CCCEEEEEECCCEEEEEECCCCCEEEEECCCCC-CEEEEEEECC-CCCEEEEEEECCCEEEEEECC------
T ss_conf 99926---999899981899599987799936899958997-3799998408-996599998089709999899------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCE
Q ss_conf 68999987778988886202531346640559999453487999999699998999968992999983678313788713
Q 000654 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (1371)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~~~l~gH~~~I~~I~~spd~~~LvS~s~Dg~VriWdl~~~~~~~~~~~~ 297 (1371)
.+.....+.+|.+.|.+++|+|++.++++++.|+.|++||+..+.. ..
T Consensus 732 ---------------------------~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~-----~~ 779 (1249)
T 3sfz_A 732 ---------------------------QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE-----RK 779 (1249)
T ss_dssp ---------------------------SSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE-----EE
T ss_pred ---------------------------CCCHHHEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCC-----CC
T ss_conf ---------------------------9634220127779788999925999899997898599996888865-----53
Q ss_pred EEEC--------EEEECCCCCEEEEEEC--CCEEEEEECCCEEEEEEC-CCCEEEEEE-ECCCCCEEEEEECCCCCEEEE
Q ss_conf 6410--------4753388528999985--998999958990999927-994899992-025957799999499989999
Q 000654 298 EVGS--------SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK-EHIGRGIWRCLYDSLSSLLVT 365 (1371)
Q Consensus 298 ~~~~--------~~~~gh~~~I~~i~~s--~~~Lvtgs~Dg~I~IWd~-~g~~i~~l~-~h~~~~V~sia~spdg~~LvT 365 (1371)
.+.. .........+.+++|+ +..+++++ ++.+.+|+. ++..+..+. +|.. .|++++|+|++.++++
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~ 857 (1249)
T 3sfz_A 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVI 857 (1249)
T ss_dssp EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-CCCEEEEEECCCCCEEEECCCCCC-CEEEEEECCCCCEEEE
T ss_conf 02023210246776445650179999978998899975-895999995689723577478777-6079998278888999
Q ss_pred EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCCEEE-EECCCCEEE
Q ss_conf 9879949999949887543357776200168741799541697542552157786379999912990999-991893899
Q 000654 366 AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYH 444 (1371)
Q Consensus 366 gg~Dg~I~iwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~iafs~d~~llv-~t~~G~i~~ 444 (1371)
++.|+.|++|++... .....+.+|...|.+++|+|++..++ ++.+|.+..
T Consensus 858 ~~~dg~v~vwd~~~~-----------------------------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~v 908 (1249)
T 3sfz_A 858 ALSQYCVELWNIDSR-----------------------------LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908 (1249)
T ss_dssp ECSSSCEEEEETTTT-----------------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EECCCEEEEEECCCC-----------------------------CEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 947986999986789-----------------------------565322787665689999899998999958972898
Q ss_pred EEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCE
Q ss_conf 99611787504896740589548997305899988889997999991898699999827833551124565315754413
Q 000654 445 TKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQL 524 (1371)
Q Consensus 445 ~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~i 524 (1371)
|++........ ......+... . .+....++.....+.+.++....+.... . ....+
T Consensus 909 w~~~~~~~~~~-----~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~i 964 (1249)
T 3sfz_A 909 WETKKVCKNSA-----IVLKQEIDVV-F--------QENETMVLAVDNIRGLQLIAGKTGQIDY--------L--PEAQV 964 (1249)
T ss_dssp EEHHHHHSCCS-----SSEEEEEEEE-E--------ETTEEEEEEEESSSSEEEEEESSCCEEE--------E--CCSCE
T ss_pred EECCCCCEEEE-----ECCCCEEEEE-E--------CCCCCEEEEECCCCCEEEEECCCCEEEE--------C--CCCCE
T ss_conf 87466520102-----1133103689-7--------5998689981377624898447650897--------2--56727
Q ss_pred EEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCEE
Q ss_conf 37899541998199998389919999479999864334676420111223402359818999831499789985388809
Q 000654 525 LGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNL 604 (1371)
Q Consensus 525 l~~~~~~s~d~~~Lvs~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI 604 (1371)
. .++++++++++++++.+|.|++|++..... ... ...|...|++++|+|++++|++|+.||+|
T Consensus 965 ~--~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~--------------~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~i 1027 (1249)
T 3sfz_A 965 S--CCCLSPHLEYVAFGDEDGAIKIIELPNNRV--------------FSS-GVGHKKAVRHIQFTADGKTLISSSEDSVI 1027 (1249)
T ss_dssp E--EEEECTTSSEEEEEETTSCCEEEETTTTSC--------------EEE-CCCCSSCCCCEEECSSSSCEEEECSSSBE
T ss_pred E--EEEECCCCCEEEEECCCCCEEEEECCCCCE--------------EEE-CCCCCCCEEEEEECCCCCEEEEECCCCEE
T ss_conf 8--999958997799986999889997578723--------------443-03677716899998999989998699879
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCC
Q ss_conf 99976853224434344100166421123458767699999640898229999749974999999459863023201000
Q 000654 605 VLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQV 684 (1371)
Q Consensus 605 ~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~~~~~~~d~~~l~T~g~DG~I~iW~l~~~~~~~~~~~~~~v 684 (1371)
++|++.++.. .. . ..|. ..|+++.|+ ++ ..+++++.||.+++|++..+.....
T Consensus 1028 ~vwd~~~~~~--------~~------~-~~~~-~~v~~~~~~---~~-~~l~~~~~dg~v~vwd~~~~~~~~~------- 1080 (1249)
T 3sfz_A 1028 QVWNWQTGDY--------VF------L-QAHQ-ETVKDFRLL---QD-SRLLSWSFDGTVKVWNVITGRIERD------- 1080 (1249)
T ss_dssp EEEETTTTEE--------EC------C-BCCS-SCEEEEEEC---SS-SEEEEEESSSEEEEEETTTTCCCEE-------
T ss_pred EEEECCCCCE--------EE------E-ECCC-CCEEEEEEC---CC-CCEEEEECCCCEEEEECCCCCEEEE-------
T ss_conf 9998799966--------89------8-5278-738999990---89-9589997889689988898865588-------
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEE
Q ss_conf 00110576873899558566328970227638999276640998752268454231124787998429999945489999
Q 000654 685 KELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIH 764 (1371)
Q Consensus 685 ~~~~~i~~~~~~~~~~d~~~~~~v~Gf~s~~~viWn~~~~~el~~v~CGG~hR~w~~~~~~~~~~~~~fa~~k~~~i~~~ 764 (1371)
T Consensus 1081 -------------------------------------------------------------------------------- 1080 (1249)
T 3sfz_A 1081 -------------------------------------------------------------------------------- 1080 (1249)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCEECCC
Q ss_conf 96412586776563333478864055868521664345432234789981999800777199998618997652000024
Q 000654 765 RHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLG 844 (1371)
Q Consensus 765 ~~~~~~~~~~~~~~~l~~~~HgreI~~v~~s~~~~~~~~~~~~~~~~~~~~i~TGseDgtIri~~~~~~~~~~~~~~~l~ 844 (1371)
..+|...|++++|+++ +.++++|+.|++|++|.+.. ......+.
T Consensus 1081 -----------------~~~~~~~v~~~~~s~d---------------~~~l~s~s~d~~v~iwd~~~----~~~~~~l~ 1124 (1249)
T 3sfz_A 1081 -----------------FTCHQGTVLSCAISSD---------------ATKFSSTSADKTAKIWSFDL----LSPLHELK 1124 (1249)
T ss_dssp -----------------EECCSSCCCCEEECSS---------------SSSCEEECCSSCCCEECSSS----SSCSBCCC
T ss_pred -----------------ECCCCCCEEEEEECCC---------------CCEEEEECCCCCEEEEECCC----CCEEEEEC
T ss_conf -----------------7466884899999899---------------99899984999489987898----50012550
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 444754212354420001123223588743223465334689877999952441489999983
Q 000654 845 EHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRH 907 (1371)
Q Consensus 845 ~H~~gsaV~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~S~g~d~~i~iW~~~~ 907 (1371)
+|. .+|++++|. .++.+|++++.|+.|++|.+..
T Consensus 1125 ~h~--~~v~~~~~s---------------------------~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1125 GHN--GCVRCSAFS---------------------------LDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp CCS--SCEEEEEEC---------------------------SSSSEEEEEETTSCCCEEESSS
T ss_pred CCC--CCEEEEEEC---------------------------CCCCEEEEEECCCEEEEEECCC
T ss_conf 687--767999997---------------------------9999899982899799998899
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=432.10 Aligned_cols=582 Identities=13% Similarity=0.120 Sum_probs=447.5
Q ss_pred CEEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCEEEEECCCC----EEEEEEEEECCCC-EEEEEEECCCCC
Q ss_conf 49999378870018479999974189889989999990991999998999----5997998552832-899995023354
Q 000654 5 DLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----TLIRPFQVFHGIR-LHGISCNFINCT 79 (1371)
Q Consensus 5 tV~iWdl~~g~h~~~Vtaiafs~~pd~~~~~~llaaG~dg~I~Iwd~~sg----~~i~~~~~~~~~~-V~~i~~s~~~~~ 79 (1371)
...+|......|.+.|++++|+ |+ +++++++.++.|++||+.++ +.+..+..|.+ . |.+++|+
T Consensus 6 ~~~~~~~~~~~~~~~v~~~~~s--pd----g~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~-~~v~~~~~s----- 73 (615)
T 1pgu_A 6 LKEIIPPQPSTQRNFTTHLSYD--PT----TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS-SVVTTVKFS----- 73 (615)
T ss_dssp EEEEECCCCCCCTTCCCCCEEE--TT----TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTT-SCEEEEEEC-----
T ss_pred HHHCCCCCCCCCCCCEEEEEEC--CC----CCEEEEECCCEEEEEECCCCCCCCCCCEEEECCCC-CEEEEEEEC-----
T ss_conf 5231599987765853689988--99----99799935984999977788776514318805788-449999979-----
Q ss_pred CCC--CCCCEEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECC
Q ss_conf 589--8741013999997-9969999906688999888886310001556425788768999997322899699999789
Q 000654 80 EGS--VSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (1371)
Q Consensus 80 ~~p--dg~~~~~~la~~g-dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~I~~i~fsp~~~dg~~Latgs~D 156 (1371)
| ++ .++++++ |+.|++|++..... ......+....+..|...|.+++|+| ++.+|++++.+
T Consensus 74 --p~~~~----~~l~s~~~dg~v~vw~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~ 137 (615)
T 1pgu_A 74 --PIKGS----QYLCSGDESGKVIVWGWTFDKE-------SNSVEVNVKSEFQVLAGPISDISWDF---EGRRLCVVGEG 137 (615)
T ss_dssp --SSTTC----CEEEEEETTSEEEEEEEEEEGG-------GTEEEEEEEEEEECCSSCEEEEEECT---TSSEEEEEECC
T ss_pred --CCCCC----CEEEEECCCCEEEEEECCCCCC-------CCCCCCCCCCHHHCCCCCEEEEEEEC---CCCEEEEECCC
T ss_conf --67899----8899964898799976888765-------54455420001112566379999907---99989993168
Q ss_pred ----CCEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCC-EEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----94999998899289998048742179999620698885-9999958991999980368765568999987778988
Q 000654 157 ----NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1371)
Q Consensus 157 ----g~I~iWd~~~~~~~~~l~~~~~~~i~si~~~~~s~d~~-~Lasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~ 231 (1371)
+.|.+|| .++.+..+..+. ..+.++.+ ++++. ++++++.|+.|++|+..
T Consensus 138 ~~~~~~v~~~d--~~~~~~~~~~~~-~~v~~~~~---~~~~~~~l~~~~~d~~v~vwd~~-------------------- 191 (615)
T 1pgu_A 138 RDNFGVFISWD--SGNSLGEVSGHS-QRINACHL---KQSRPMRSMTVGDDGSVVFYQGP-------------------- 191 (615)
T ss_dssp SSCSEEEEETT--TCCEEEECCSCS-SCEEEEEE---CSSSSCEEEEEETTTEEEEEETT--------------------
T ss_pred CCCCCEEEEEE--CCCCCEEEECCC-CCEEEEEE---CCCCCCEEEEEECCCCEEEEECC--------------------
T ss_conf 77755799997--898103130677-43889998---87899689999579959999699--------------------
Q ss_pred CCCCEEEECCCCCCEEEEEEEECCCC---CEEEEEECCC-CCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECEEE-E-
Q ss_conf 88620253134664055999945348---7999999699-9989999689929999836783137887136410475-3-
Q 000654 232 SDFKCFKLQDQQHTAVNLFRLVGHEG---SIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-Y- 305 (1371)
Q Consensus 232 ~~~~~~~i~~~~~~~~~~~~l~gH~~---~I~~I~~spd-~~~LvS~s~Dg~VriWdl~~~~~~~~~~~~~~~~~~~-~- 305 (1371)
..+.+..+.+|.. .|.+++|+|+ +.++++++.|+.|++||+..++. .. .+ .
T Consensus 192 -------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----~~-----~~~~~ 248 (615)
T 1pgu_A 192 -------------PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-----LK-----YIEDD 248 (615)
T ss_dssp -------------TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-----EE-----ECCBT
T ss_pred -------------CCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCE-----EE-----EECCC
T ss_conf -------------96101320256777742899997897788899986898089998999978-----58-----95254
Q ss_pred --CCCCCEEEEEEC-CCEEEEEECCCEEEEEEC-CCCEEEEEEECC---CCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf --388528999985-998999958990999927-994899992025---9577999994999899999879949999949
Q 000654 306 --GHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI---GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1371)
Q Consensus 306 --gh~~~I~~i~~s-~~~Lvtgs~Dg~I~IWd~-~g~~i~~l~~h~---~~~V~sia~spdg~~LvTgg~Dg~I~iwdl~ 378 (1371)
+|...|.+++|+ +.+|++++.|+.+++|++ +++.+..+..+. ...+.++.+. ++.++++++.|+.+++|++.
T Consensus 249 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 249 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETT
T ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEEECC
T ss_conf 44567755899981899799984899489997888927878847877545714699918-99769999789978999888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEE
Q ss_conf 88754335777620016874179954169754255215778637999991299099999189389999611787504896
Q 000654 379 AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (1371)
Q Consensus 379 ~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~iafs~d~~llv~t~~G~i~~~~l~~~~~~~w~~i 458 (1371)
.. +.+..+.+|...|.+++| |+ ++.++.+|.+. +|+.. .+
T Consensus 328 ~~-----------------------------~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~---~w~~~-----~~ 367 (615)
T 1pgu_A 328 HD-----------------------------EVLKTISGHNKGITALTV-NP--LISGSYDGRIM---EWSSS-----SM 367 (615)
T ss_dssp EE-----------------------------EEEEEECCCSSCEEEEET-TT--TEEEETTSCEE---ETTTT-----EE
T ss_pred CC-----------------------------CEEEEEECCCCCEEEEEE-CC--CEEECCCCEEE---EEECH-----HH
T ss_conf 99-----------------------------288999477787899995-67--48987999599---98752-----41
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCEE
Q ss_conf 74058954899730589998888999799999189869999982783355112456531575441337899541998199
Q 000654 459 LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFI 538 (1371)
Q Consensus 459 ~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~~~~il~~~~~~s~d~~~L 538 (1371)
. ..+...+.++.+ +.+..+++++.|+.+++|++..+.... .. ...++++++.++
T Consensus 368 ~-~~~~~~v~~~~~---------~~~~~l~~~~~d~~i~~~~~~~~~~~~--------------~~--~~~~~s~~~~~~ 421 (615)
T 1pgu_A 368 H-QDHSNLIVSLDN---------SKAQEYSSISWDDTLKVNGITKHEFGS--------------QP--KVASANNDGFTA 421 (615)
T ss_dssp E-CCCCSCEEEEEC---------CSTTCCEEEETTTEEEETTEEEEECSS--------------CE--EEEEECSSSEEE
T ss_pred C-CCCCCCEEEEEE---------CCCCEEEEEECCCCEEEEECCCCCCCC--------------CC--EEEEECCCCCEE
T ss_conf 5-755685179997---------898679999589979998866676367--------------84--699982898789
Q ss_pred EEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEECC-CCEEEEEECCCCCCCCC
Q ss_conf 99838991999947999986433467642011122340235981899983149978998538-88099997685322443
Q 000654 539 FTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL-RGNLVLFPLLRDLLNDK 617 (1371)
Q Consensus 539 vs~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~-dGtI~Iwd~~~~~~~~~ 617 (1371)
+++ .++.+.+|++.... ....+ .+...+++++|+ +++|++|+. ||.|++|++....
T Consensus 422 ~~~-~~~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~---- 478 (615)
T 1pgu_A 422 VLT-NDDDLLILQSFTGD--------------IIKSV--RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE---- 478 (615)
T ss_dssp EEE-TTSEEEEEETTTCC--------------EEEEE--ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE----
T ss_pred EEE-CCCCEEEEECCCCC--------------EEEEC--CCCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCC----
T ss_conf 996-79826999446786--------------65551--567872077883--88899965689869999888854----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf 43441001664211234587676999996408982299997499749999994598630232010000011057687389
Q 000654 618 SVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAEN 697 (1371)
Q Consensus 618 ~~~~~~~l~p~~~~~g~hg~~~VTsV~~~~~~~d~~~l~T~g~DG~I~iW~l~~~~~~~~~~~~~~v~~~~~i~~~~~~~ 697 (1371)
+.. ..+ ..|. ..|+++.|+ +++.+|++++.||.+++|++..+... .
T Consensus 479 -------~~~-~~~-~~~~-~~v~~~~~s---~~g~~l~~~~~dg~i~iw~~~~~~~~---------~------------ 524 (615)
T 1pgu_A 479 -------VSF-DLK-TPLR-AKPSYISIS---PSETYIAAGDVMGKILLYDLQSREVK---------T------------ 524 (615)
T ss_dssp -------EEE-ECS-SCCS-SCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEEE---------E------------
T ss_pred -------CCC-CCC-CCCC-CCEEEEEEC---CCCCEEEECCCCCEEEEEECCCCCCE---------E------------
T ss_conf -------353-336-7765-750799998---99998998179985998657777624---------6------------
Q ss_pred CCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCC
Q ss_conf 95585663289702276389992766409987522684542311247879984299999454899999641258677656
Q 000654 698 NSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFP 777 (1371)
Q Consensus 698 ~~~d~~~~~~v~Gf~s~~~viWn~~~~~el~~v~CGG~hR~w~~~~~~~~~~~~~fa~~k~~~i~~~~~~~~~~~~~~~~ 777 (1371)
T Consensus 525 -------------------------------------------------------------------------------- 524 (615)
T 1pgu_A 525 -------------------------------------------------------------------------------- 524 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCEECCCCCCCCCCEEEEEE
Q ss_conf 33334788640558685216643454322347899819998007771999986189976520000244447542123544
Q 000654 778 KNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICF 857 (1371)
Q Consensus 778 ~~l~~~~HgreI~~v~~s~~~~~~~~~~~~~~~~~~~~i~TGseDgtIri~~~~~~~~~~~~~~~l~~H~~gsaV~~i~~ 857 (1371)
...+.|...|++++|+|..... .....++.+|++|++|++|++|.+.... ..+..+.+|. ..|++++|
T Consensus 525 --~~~~~h~~~v~~~~~sp~~~~~-----~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~h~--~~v~~l~~ 592 (615)
T 1pgu_A 525 --SRWAFRTSKINAISWKPAEKGA-----NEEEIEEDLVATGSLDTNIFIYSVKRPM---KIIKALNAHK--DGVNNLLW 592 (615)
T ss_dssp --CCSCCCSSCEEEEEECCCC-----------CCSCCEEEEEETTSCEEEEESSCTT---CCEEETTSST--TCEEEEEE
T ss_pred --EEECCCCCCEEEEEECCCCCCC-----CCCCCCCCEEEEECCCCCEEEEECCCCC---EECHHHHCCC--CCEEEEEE
T ss_conf --7604788714699976832345-----3324688889998179719999778885---4031133594--30589997
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 20001123223588743223465334689877999952441489999983
Q 000654 858 VSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRH 907 (1371)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~S~g~d~~i~iW~~~~ 907 (1371)
.+ ++. |++++.|+.|++|+++.
T Consensus 593 s~---------------------------~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 593 ET---------------------------PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EE---------------------------TTE-EEEEETTSCEEEEEEC-
T ss_pred CC---------------------------CCC-EEEECCCCEEEEEEEEC
T ss_conf 38---------------------------997-28845996399996015
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=412.74 Aligned_cols=527 Identities=13% Similarity=0.144 Sum_probs=400.1
Q ss_pred CCCEEEEECCCC----C-------CCCC-EEEEEEEECC--CCCCCCCEEEEEE-CCCEEEEECCCC--------EEEEE
Q ss_conf 964999937887----0-------0184-7999997418--9889989999990-991999998999--------59979
Q 000654 3 KKDLSEWRLDVG----Q-------YLGE-ISALCFVHLP--SHLSSLPFLLAGS-GSQVLLYDLEAG--------TLIRP 59 (1371)
Q Consensus 3 D~tV~iWdl~~g----~-------h~~~-Vtaiafs~~p--d~~~~~~llaaG~-dg~I~Iwd~~sg--------~~i~~ 59 (1371)
|+.|++|++.++ + |.++ |++++|+ | + +++|++|+ ++.|++||+.++ +.+..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~s--p~~~----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 111 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS--PIKG----SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE 111 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEEC--SSTT----CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE
T ss_pred CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEEC--CCCC----CCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCH
T ss_conf 984999977788776514318805788449999979--6789----9889996489879997688876554455420001
Q ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEEEC-C----CEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 985528328999950233545898741013999997-9----96999990668899988888631000155642578876
Q 000654 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1371)
Q Consensus 60 ~~~~~~~~V~~i~~s~~~~~~~pdg~~~~~~la~~g-d----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~ 134 (1371)
+..+.. .|.+++|+ |++ ..+++++ + +.|.+|+. .+.+..+.+|.+.
T Consensus 112 ~~~~~~-~v~~~~~s-------~~~----~~l~~~~~~~~~~~~v~~~d~-----------------~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 112 FQVLAG-PISDISWD-------FEG----RRLCVVGEGRDNFGVFISWDS-----------------GNSLGEVSGHSQR 162 (615)
T ss_dssp EECCSS-CEEEEEEC-------TTS----SEEEEEECCSSCSEEEEETTT-----------------CCEEEECCSCSSC
T ss_pred HHCCCC-CEEEEEEE-------CCC----CEEEEECCCCCCCCEEEEEEC-----------------CCCCEEEECCCCC
T ss_conf 112566-37999990-------799----989993168777557999978-----------------9810313067743
Q ss_pred EEEEEEEEECCCCC-EEEEEECCCCEEEEECCCCEEEEEEECCCCC--EEEEEEEECCCCC-CCEEEEEECCCEEEEEEC
Q ss_conf 89999973228996-9999978994999998899289998048742--1799996206988-859999958991999980
Q 000654 135 VFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERC--LLYSMKLWGDNLE-ALRIASGTIYNEIIVWKV 210 (1371)
Q Consensus 135 I~~i~fsp~~~dg~-~Latgs~Dg~I~iWd~~~~~~~~~l~~~~~~--~i~si~~~~~s~d-~~~Lasgs~dg~I~iWd~ 210 (1371)
|.+++|+| ++. .+++++.|+.|++||+.+++.+..+..+... .+.++.+ +++ +.++++++.|+.|++|++
T Consensus 163 v~~~~~~~---~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 163 INACHLKQ---SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF---SPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp EEEEEECS---SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE---CSTTCCEEEEEETTCCEEEEET
T ss_pred EEEEEECC---CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEE---CCCCCCEEEEEECCCEEEEEEC
T ss_conf 88999887---89968999957995999969996101320256777742899997---8977888999868980899989
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEE-E---CCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 368765568999987778988886202531346640559999-4---534879999996999989999689929999836
Q 000654 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-V---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1371)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~~~l-~---gH~~~I~~I~~spd~~~LvS~s~Dg~VriWdl~ 286 (1371)
. .++.+..+ . +|...|.++.|+ ++.++++++.|+.|++||+.
T Consensus 237 ~---------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 237 K---------------------------------SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp T---------------------------------TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred C---------------------------------CCCEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEECC
T ss_conf 9---------------------------------9978589525444567755899981-89979998489948999788
Q ss_pred CCCCCCCCCCEEEECEEEECC----CCCEEEEEEC-CCEEEEEECCCEEEEEEC-CCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 783137887136410475338----8528999985-998999958990999927-9948999920259577999994999
Q 000654 287 AEYWKDSDSIEEVGSSVLYGH----NARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1371)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~gh----~~~I~~i~~s-~~~Lvtgs~Dg~I~IWd~-~g~~i~~l~~h~~~~V~sia~spdg 360 (1371)
.++. .. .+..+ ...+.++.+. +.++++++.|+.+++|++ +++++..+..|.. .|++++| |+
T Consensus 283 ~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~v~~~~~-~~- 349 (615)
T 1pgu_A 283 TSKC-----VQ-----KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK-GITALTV-NP- 349 (615)
T ss_dssp TTEE-----EE-----EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSS-CEEEEET-TT-
T ss_pred CCCE-----EE-----EECCCCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC-CEEEEEE-CC-
T ss_conf 8927-----87-----8847877545714699918997699997899789998889928899947778-7899995-67-
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCCEEEEECCC
Q ss_conf 89999987994999994988754335777620016874179954169754255215778637999991299099999189
Q 000654 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1371)
Q Consensus 361 ~~LvTgg~Dg~I~iwdl~~~~~~~l~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~V~~iafs~d~~llv~t~~G 440 (1371)
+++++.||.|++|++. . +. ..|...|.+++|.++..++.++.++
T Consensus 350 --l~~~~~dg~i~~w~~~--~------------------------------~~--~~~~~~v~~~~~~~~~~l~~~~~d~ 393 (615)
T 1pgu_A 350 --LISGSYDGRIMEWSSS--S------------------------------MH--QDHSNLIVSLDNSKAQEYSSISWDD 393 (615)
T ss_dssp --TEEEETTSCEEETTTT--E------------------------------EE--CCCCSCEEEEECCSTTCCEEEETTT
T ss_pred --CEEECCCCEEEEEECH--H------------------------------HC--CCCCCCEEEEEECCCCEEEEEECCC
T ss_conf --4898799959998752--4------------------------------15--7556851799978986799995899
Q ss_pred CEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEECCCC
Q ss_conf 38999961178750489674058954899730589998888999799999189869999982783355112456531575
Q 000654 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGI 520 (1371)
Q Consensus 441 ~i~~~~l~~~~~~~w~~i~~~~~~~~I~~ld~~~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~~~~ 520 (1371)
.+.. |+...... ...+.++.+ .+++.+++.+ .++.+.+|+...+...... . .
T Consensus 394 ~i~~---~~~~~~~~--------~~~~~~~~~--------s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~--~ 445 (615)
T 1pgu_A 394 TLKV---NGITKHEF--------GSQPKVASA--------NNDGFTAVLT-NDDDLLILQSFTGDIIKSV------R--L 445 (615)
T ss_dssp EEEE---TTEEEEEC--------SSCEEEEEE--------CSSSEEEEEE-TTSEEEEEETTTCCEEEEE------E--C
T ss_pred CEEE---EECCCCCC--------CCCCEEEEE--------CCCCCEEEEE-CCCCEEEEECCCCCEEEEC------C--C
T ss_conf 7999---88666763--------678469998--------2898789996-7982699944678665551------5--6
Q ss_pred CCCEEEEEEEECCCCCEEEEECC-CCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEEC
Q ss_conf 44133789954199819999838-99199994799998643346764201112234023598189998314997899853
Q 000654 521 ERQLLGTYWCKSLGHRFIFTADP-KGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD 599 (1371)
Q Consensus 521 ~~~il~~~~~~s~d~~~Lvs~s~-dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs 599 (1371)
...+.. ++++ +++|++++. ++.+++|++.... +.. .. ...|...|++++|+|++++|++|+
T Consensus 446 ~~~~~~--~~~~--~~~l~~~~~~d~~i~~~~~~~~~------------~~~-~~-~~~~~~~v~~~~~s~~g~~l~~~~ 507 (615)
T 1pgu_A 446 NSPGSA--VSLS--QNYVAVGLEEGNTIQVFKLSDLE------------VSF-DL-KTPLRAKPSYISISPSETYIAAGD 507 (615)
T ss_dssp SSCEEE--EEEC--SSEEEEEETTTSCEEEEETTEEE------------EEE-EC-SSCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCEE--EEEC--CCEEEEEECCCCEEEEEECCCCC------------CCC-CC-CCCCCCCEEEEEECCCCCEEEECC
T ss_conf 787207--7883--88899965689869999888854------------353-33-677657507999989999899817
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC-------CCCEEEEEECCCCCEEEEEEECC
Q ss_conf 88809999768532244343441001664211234587676999996408-------98229999749974999999459
Q 000654 600 LRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLR-------SNQTEIRSTGGDGCICYLEYDKD 672 (1371)
Q Consensus 600 ~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~~~~~~-------~d~~~l~T~g~DG~I~iW~l~~~ 672 (1371)
.||.|++|++.+.. +...+.+.|. ..|+++.|++.. .++.+|++++.||.|++|+++.+
T Consensus 508 ~dg~i~iw~~~~~~-------------~~~~~~~~h~-~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 508 VMGKILLYDLQSRE-------------VKTSRWAFRT-SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp TTSCEEEEETTTTE-------------EEECCSCCCS-SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCCEEEEEECCCCC-------------CEEEEECCCC-CCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCC
T ss_conf 99859986577776-------------2467604788-714699976832345332468888999817971999977888
Q ss_pred CCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 86302320100000110576873899558566328970227638999276640998752268454231124787998429
Q 000654 673 RESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNC 752 (1371)
Q Consensus 673 ~~~~~~~~~~~v~~~~~i~~~~~~~~~~d~~~~~~v~Gf~s~~~viWn~~~~~el~~v~CGG~hR~w~~~~~~~~~~~~~ 752 (1371)
... +
T Consensus 574 ~~~-------------------------------~--------------------------------------------- 577 (615)
T 1pgu_A 574 MKI-------------------------------I--------------------------------------------- 577 (615)
T ss_dssp TCC-------------------------------E---------------------------------------------
T ss_pred CEE-------------------------------C---------------------------------------------
T ss_conf 540-------------------------------3---------------------------------------------
Q ss_pred EEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECC
Q ss_conf 99994548999996412586776563333478864055868521664345432234789981999800777199998618
Q 000654 753 FAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSP 832 (1371)
Q Consensus 753 fa~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~HgreI~~v~~s~~~~~~~~~~~~~~~~~~~~i~TGseDgtIri~~~~~ 832 (1371)
....+|...|++++|+++ +. |+||++|++|++|++..
T Consensus 578 ---------------------------~~~~~h~~~v~~l~~s~~---------------~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 578 ---------------------------KALNAHKDGVNNLLWETP---------------ST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ---------------------------EETTSSTTCEEEEEEEET---------------TE-EEEEETTSCEEEEEEC-
T ss_pred ---------------------------HHHHCCCCCEEEEEECCC---------------CC-EEEECCCCEEEEEEEEC
T ss_conf ---------------------------113359430589997389---------------97-28845996399996015
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=397.32 Aligned_cols=705 Identities=11% Similarity=0.072 Sum_probs=384.9
Q ss_pred CCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEE
Q ss_conf 57887689999973228996999997899499999889928999804874217999962069888599999589919999
Q 000654 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1371)
Q Consensus 129 ~gh~~~I~~i~fsp~~~dg~~Latgs~Dg~I~iWd~~~~~~~~~l~~~~~~~i~si~~~~~s~d~~~Lasgs~dg~I~iW 208 (1371)
.+|.+.|++++|+| ++.+||+|+.|+.|++|+.........+. +...+.++.| ++ +.+|++++.|+.|++|
T Consensus 14 ~gh~~~V~~lafsp---dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~f---sp-g~~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 14 YGMSSKPIAAAFDF---TQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRF---VK-GIYLVVINAKDTVYVL 84 (902)
T ss_dssp EECSSCEEEEEEET---TTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEE---ET-TTEEEEEETTCEEEEE
T ss_pred CCCCCCCEEEEECC---CCCEEEEEECCCEEEEEECCCCEEEEECC--CCCCEEEEEE---CC-CCEEEEEECCCEEEEE
T ss_conf 68899848999979---99989999297989999689947999868--9997799999---08-9889999895959999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 80368765568999987778988886202531346640559999453487999999699998999968992999983678
Q 000654 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1371)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~~~l~gH~~~I~~I~~spd~~~LvS~s~Dg~VriWdl~~~ 288 (1371)
|+. +++.+..+. |.+.|++++|+|++.++++++.|+.|++||+...
T Consensus 85 d~~---------------------------------~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 85 SLY---------------------------------SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp ETT---------------------------------TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred ECC---------------------------------CCCEEEEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCC
T ss_conf 899---------------------------------996899974-8998799998799998999949992999999999
Q ss_pred CCCCCCCCEEEEC-------EEEECCCCCEEEEEECC---CEEEEEECCCEEEEEEC-CCCEEEEEEEC-----------
Q ss_conf 3137887136410-------47533885289999859---98999958990999927-99489999202-----------
Q 000654 289 YWKDSDSIEEVGS-------SVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEH----------- 346 (1371)
Q Consensus 289 ~~~~~~~~~~~~~-------~~~~gh~~~I~~i~~s~---~~Lvtgs~Dg~I~IWd~-~g~~i~~l~~h----------- 346 (1371)
.. . .+.. ....+|...|++++|++ ..+++++.|+.+ +||+ +++++..+..|
T Consensus 131 ~~-----~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~ 203 (902)
T 2oaj_A 131 QL-----S-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS 203 (902)
T ss_dssp EE-----E-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC
T ss_pred CC-----C-CCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 62-----6-5030432100025445789738999766999989999189849-998778965799833557767776544
Q ss_pred -------CCCCEEEEEECCCCCEEEEEECCCCEEEEECCC-CCCCC--CC---CCCCCCCCCCCCCEEEEEECCCCCCEE
Q ss_conf -------595779999949998999998799499999498-87543--35---777620016874179954169754255
Q 000654 347 -------IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGS--LE---SHPEAKEFNGRTEIFSIKIPNFSEQIR 413 (1371)
Q Consensus 347 -------~~~~V~sia~spdg~~LvTgg~Dg~I~iwdl~~-~~~~~--l~---~~~~~~~~~~~~~i~s~~~~~~~~~~~ 413 (1371)
.. .|++++|+|++.+|++++.|+.|++||+.. +.+.. +. .|... . ..+.
T Consensus 204 ~~~~~~h~~-~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~-----~------~~~~------ 265 (902)
T 2oaj_A 204 EKTNEKRTP-KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ-----P------DYIR------ 265 (902)
T ss_dssp CCTTSCBCC-CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC-----T------TCCC------
T ss_pred CCCCCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCC-----C------CCCC------
T ss_conf 332345677-768999859999999998999399998789968888850123457877-----7------6788------
Q ss_pred ECCCCCCCEEEEEEEC----CC-CEEEEECCC------CEEEEEEECCC---------------CCEEEEEEEECCCCCE
Q ss_conf 2157786379999912----99-099999189------38999961178---------------7504896740589548
Q 000654 414 LTDSKSEYVRCLHLTS----ED-TLYIATNHG------YLYHTKLCDMD---------------SVNWNKILQVSEGMPI 467 (1371)
Q Consensus 414 ~~~~~~~~V~~iafs~----d~-~llv~t~~G------~i~~~~l~~~~---------------~~~w~~i~~~~~~~~I 467 (1371)
....+.+.|.+++|++ ++ .++++++.. .+..+.+.... .....++........+
T Consensus 266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v 345 (902)
T 2oaj_A 266 DSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPI 345 (902)
T ss_dssp CCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCE
T ss_pred CCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCE
T ss_conf 88555677457999734999887899968877778885289995478987555425565466417452278741899954
Q ss_pred EEEEECCCC-CCC-CCCCCCEEEEEECCCCEEEEEECCCCCCCC-EEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCC
Q ss_conf 997305899-988-889997999991898699999827833551-12456531575441337899541998199998389
Q 000654 468 ICMDLLSNE-PKY-PCGIDDWVALGDGKGNMTIVRVVGDVHTPQ-LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPK 544 (1371)
Q Consensus 468 ~~ld~~~~~-~~~-s~~~~~lla~gs~dG~I~iwdi~~~~~~~~-~~~~~~~~~~~~~~il~~~~~~s~d~~~Lvs~s~d 544 (1371)
..+.+.... ..+ ...+...+++++.||.|++|++.++..... ...... ...++..+.. ++++ ..
T Consensus 346 ~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~-l~~~~~~v~~--~~~s--------~~-- 412 (902)
T 2oaj_A 346 VNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQN-LSWLRPLATT--SMAA--------SV-- 412 (902)
T ss_dssp EEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGG-GTTBTTBEEE--EEEE--------EE--
T ss_pred EEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCC-CCCCCCCEEE--EEEE--------EC--
T ss_conf 799997788988677878506999917984899978999855655568985-2235897248--9999--------74--
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 91999947999986433467642011122340235981899983149978998538880999976853224434344100
Q 000654 545 GRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVE 624 (1371)
Q Consensus 545 g~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~ 624 (1371)
..++|+...... . ..... ..+|...+.+++|+|++++|++|+.|++|++||+..+..... ... .
T Consensus 413 -~~~~w~~~~~~~-~----------~~~~~-l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~--~~~-~ 476 (902)
T 2oaj_A 413 -PNKLWLGALSAA-Q----------NKDYL-LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN--ASF-E 476 (902)
T ss_dssp -EHHHHHHHHHTT-B----------CCCCS-CCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT--BCE-E
T ss_pred -CHHHHHHHHHCC-C----------CCCCC-CCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCC--CEE-E
T ss_conf -999998888604-6----------99975-457857787533366675899965898389997877645677--367-7
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCC
Q ss_conf 16642112345876769999964089822999974997499999945986302320100000110576873899558566
Q 000654 625 VSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLAS 704 (1371)
Q Consensus 625 l~p~~~~~g~hg~~~VTsV~~~~~~~d~~~l~T~g~DG~I~iW~l~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~d~~~ 704 (1371)
+.........|. ..|++|+|+ +++.+|++++.||+|++|++..+..... ..++..... .+
T Consensus 477 ~~l~~~~~~~h~-~~V~svafs---pdg~~LAsgs~DgtV~lwd~~~~~~~~~-~~~~~~~~~-~~-------------- 536 (902)
T 2oaj_A 477 VNLSRTLNKAKE-LAVDKISFA---AETLELAVSIETGDVVLFKYEVNQFYSV-ENRPESGDL-EM-------------- 536 (902)
T ss_dssp EEHHHHTTCSSS-CCEEEEEEE---TTTTEEEEEETTSCEEEEEEEECCC------------------------------
T ss_pred EECHHHCCCCCC-CCEEEEEEC---CCCCEEEEEECCCEEEEEEECCCCCCCC-CCCCCCCCC-CE--------------
T ss_conf 501541377888-764699963---8999699994585799999248655575-455778665-11--------------
Q ss_pred CEEEEEECCCCEEEEECC-CCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 328970227638999276-6409987522684542311247879984299999454899999641258677656333347
Q 000654 705 CNYAAGFASTDFIIWNLI-TEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQ 783 (1371)
Q Consensus 705 ~~~v~Gf~s~~~viWn~~-~~~el~~v~CGG~hR~w~~~~~~~~~~~~~fa~~k~~~i~~~~~~~~~~~~~~~~~~l~~~ 783 (1371)
-|... +.. .......+..+ .+.. ++.+ + .......
T Consensus 537 -----~~~~~-----~~~~~~~~~~~~~~~-------------~~~~-----~~~g-~---------------~~~~~l~ 572 (902)
T 2oaj_A 537 -----NFRRF-----SLNNTNGVLVDVRDR-------------APTG-----VRQG-F---------------MPSTAVH 572 (902)
T ss_dssp ------CCSC-----CGGGSSCSEEECGGG-------------CCTT-----CSEE-E---------------EEEEEEC
T ss_pred -----EEEEC-----CCCCCCCCCCCCCCC-------------CCCC-----CCCC-C---------------CEEEEEE
T ss_conf -----34551-----346796543224236-------------8988-----7776-0---------------1469998
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCC--CEECCC-CCCCCCCEEEEEEECC
Q ss_conf 8864055868521664345432234789981999800777199998618997652--000024-4447542123544200
Q 000654 784 FHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWS--SSKLLG-EHVGGSAVRSICFVSE 860 (1371)
Q Consensus 784 ~HgreI~~v~~s~~~~~~~~~~~~~~~~~~~~i~TGseDgtIri~~~~~~~~~~~--~~~~l~-~H~~gsaV~~i~~~~~ 860 (1371)
+|..+|++|+|+|+ + +||+|++|++|+||.+....- .. .++.+. +|. +.|++++|.-.
T Consensus 573 ~h~~~V~svafSpd---------------G-~lAsgs~D~tv~lwd~~~~~~-~~~~~~~~~~~gh~--~~V~sv~Fs~~ 633 (902)
T 2oaj_A 573 ANKGKTSAINNSNI---------------G-FVGIAYAAGSLMLIDRRGPAI-IYMENIREISGAQS--ACVTCIEFVIM 633 (902)
T ss_dssp CCSCSEEEEEECBT---------------S-EEEEEETTSEEEEEETTTTEE-EEEEEGGGTCSSCC--CCEEEEEEEEE
T ss_pred CCCCCEEEEEECCC---------------C-EEEEEECCCCEEEEECCCCEE-EEEEEHHHHCCCCC--CCEEEEEEEEE
T ss_conf 68886779996487---------------6-899995897699998889839-99702467264666--61399999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 01123223588743223465334689877999952441489999983166764331132013568885201247887410
Q 000654 861 INQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLS 940 (1371)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~S~g~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1371)
+-.|| ..++.+|++++.|+.|++|.+....-.++. .. . ..
T Consensus 634 --------~~~~D-----------g~~~~~l~sgs~D~tv~~wd~~p~~~g~~~------~~-~--------------~~ 673 (902)
T 2oaj_A 634 --------EYGDD-----------GYSSILMVCGTDMGEVITYKILPASGGKFD------VQ-L--------------MD 673 (902)
T ss_dssp --------ECTTS-----------SSEEEEEEEEETTSEEEEEEEEECGGGCEE------EE-E--------------EE
T ss_pred --------ECCCC-----------CCCCEEEEEEECCCCEEEEEEECCCCCCEE------EE-E--------------CC
T ss_conf --------41789-----------876338999956873999999558998689------99-6--------------67
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCC
Q ss_conf 00123478986556677633553221100111123333345765530356775210288877861389999976403996
Q 000654 941 FQWLSTDMPTKNSSTHGKKKDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFLVKCPGS 1020 (1371)
Q Consensus 941 ~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 1020 (1371)
..+-+++ .+++.+. . +++..|.. ...+.+..+-+ .++.
T Consensus 674 ----------~~~~~~~-----~~v~~i~----~--~~~~~~~~--~~a~~~~~~~l-------------------~~~~ 711 (902)
T 2oaj_A 674 ----------ITNVTSK-----GPIHKID----A--FSKETKSS--CLATIPKMQNL-------------------SKGL 711 (902)
T ss_dssp ----------EEECCSS-----CCCCEEE----E--EETTTCCB--CBCBHHHHHGG-------------------GGTC
T ss_pred ----------CEECCCC-----CCEEEEE----E--EECCCCCC--CCCCHHHHHCC-------------------CCCC
T ss_conf ----------2440788-----9647998----5--86687973--66887897255-------------------7788
Q ss_pred CCEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf 11599999971743012210014621355555405888845777435620368986542005589999705778289993
Q 000654 1021 RLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHLPSKENVQIGSSYFVISGATDGSIAFWD 1100 (1371)
Q Consensus 1021 ~~~~~~~~~a~sd~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~tdg~i~~wd 1100 (1371)
.. -..++||||..+|+|.+ +..+. .-.++-|.+++-+|.++-+.. .+....+.+.|+++..||.|.+|+
T Consensus 712 ~~--~~~~l~~~~~~ir~~~~--~~~k~--~~k~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~l~~~~~~g~i~~~s 780 (902)
T 2oaj_A 712 CI--PGIVLITGFDDIRLITL--GKSKS--THKGFKYPLAATGLSYISTVE-----KNNDRKNLTVIITLEINGHLRVFT 780 (902)
T ss_dssp CC--CEEEEEECSSEEEEECT--TCCCE--EEEECSSCEEEEEEEEEEEEC-----SSSCEEEEEEEEEEETTSEEEEEE
T ss_pred CC--CEEEEEEECCCEEEEEC--CCCCC--EEEECCCCEEEEEEEEEEECC-----CCCCCCCCEEEEEEECCCCEEEEE
T ss_conf 77--73999993540599967--53351--236725620144777887013-----555446736999992799599997
Q ss_pred CCCHHH
Q ss_conf 775257
Q 000654 1101 VTGHVE 1106 (1371)
Q Consensus 1101 ~~~~~~ 1106 (1371)
|.+.-+
T Consensus 781 ~p~l~~ 786 (902)
T 2oaj_A 781 IPDFKE 786 (902)
T ss_dssp TTTCCE
T ss_pred CCCHHH
T ss_conf 856477
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=378.27 Aligned_cols=533 Identities=10% Similarity=0.037 Sum_probs=346.1
Q ss_pred EEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCC
Q ss_conf 9999378870018479999974189889989999990-991999998999599799855283289999502335458987
Q 000654 6 LSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVS 84 (1371)
Q Consensus 6 V~iWdl~~g~h~~~Vtaiafs~~pd~~~~~~llaaG~-dg~I~Iwd~~sg~~i~~~~~~~~~~V~~i~~s~~~~~~~pdg 84 (1371)
..+.+....-|.+.|++++|+ |+ +++||+|+ |+.|++|+....+.+..+. + ...|.+++|+ | +
T Consensus 6 ~~~~~~~~~gh~~~V~~lafs--pd----g~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~-~~~V~~l~fs-------p-g 69 (902)
T 2oaj_A 6 FSLAETNKYGMSSKPIAAAFD--FT----QNLLAIATVTGEVHIYGQQQVEVVIKLE-D-RSAIKEMRFV-------K-G 69 (902)
T ss_dssp EEEEEEEEEECSSCEEEEEEE--TT----TTEEEEEETTSEEEEECSTTCEEEEECS-S-CCCEEEEEEE-------T-T
T ss_pred EEECCCCCCCCCCCCEEEEEC--CC----CCEEEEEECCCEEEEEECCCCEEEEECC-C-CCCEEEEEEC-------C-C
T ss_conf 202120216889984899997--99----9989999297989999689947999868-9-9977999990-------8-9
Q ss_pred CCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 41013999997996999990668899988888631000155642578876899999732289969999978994999998
Q 000654 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (1371)
Q Consensus 85 ~~~~~~la~~gdg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~I~~i~fsp~~~dg~~Latgs~Dg~I~iWd~ 164 (1371)
+ .++++..|++|++||+.++ +.+..+. |.+.|++++|+| ++.+|++|+.|+.|++||+
T Consensus 70 ~---~L~S~s~D~~v~lWd~~~~---------------~~~~~~~-~~~~V~~v~~sp---~g~~l~sgs~dg~V~lwd~ 127 (902)
T 2oaj_A 70 I---YLVVINAKDTVYVLSLYSQ---------------KVLTTVF-VPGKITSIDTDA---SLDWMLIGLQNGSMIVYDI 127 (902)
T ss_dssp T---EEEEEETTCEEEEEETTTC---------------SEEEEEE-CSSCEEEEECCT---TCSEEEEEETTSCEEEEET
T ss_pred C---EEEEEECCCEEEEEECCCC---------------CEEEEEC-CCCCEEEEEECC---CCCEEEEECCCCCEEEEEC
T ss_conf 8---8999989595999989999---------------6899974-899879999879---9998999949992999999
Q ss_pred CCCEEEE-EE---------ECCCCCEEEEEEEECCCCC-CCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8992899-98---------0487421799996206988-85999995899199998036876556899998777898888
Q 000654 165 SNSSIIL-EV---------HSPERCLLYSMKLWGDNLE-ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1371)
Q Consensus 165 ~~~~~~~-~l---------~~~~~~~i~si~~~~~s~d-~~~Lasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1371)
.++.... .+ ...+...+.++.+ +|+ ...+++|+.|+.| +||++
T Consensus 128 ~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~---sp~~~~~l~~g~~dg~v-lWd~~---------------------- 181 (902)
T 2oaj_A 128 DRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW---NPRDIGTVLISYEYVTL-TYSLV---------------------- 181 (902)
T ss_dssp TTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE---ETTEEEEEEEECSSCEE-EEETT----------------------
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCEEEEEE---CCCCCCEEEEEECCCCE-EEECC----------------------
T ss_conf 99962650304321000254457897389997---66999989999189849-99877----------------------
Q ss_pred CCEEEECCCCCCEEEEEEEEC------------------CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf 620253134664055999945------------------34879999996999989999689929999836783137887
Q 000654 234 FKCFKLQDQQHTAVNLFRLVG------------------HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1371)
Q Consensus 234 ~~~~~i~~~~~~~~~~~~l~g------------------H~~~I~~I~~spd~~~LvS~s~Dg~VriWdl~~~~~~~~~~ 295 (1371)
..+.+..+.+ |...|.+++|+|++.+|++++.|++|++||+.+++.
T Consensus 182 -----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~----- 245 (902)
T 2oaj_A 182 -----------ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM----- 245 (902)
T ss_dssp -----------TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE-----
T ss_pred -----------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-----
T ss_conf -----------8965799833557767776544332345677768999859999999998999399998789968-----
Q ss_pred CEEEECEEEE-------------CCCCCEEEEEEC----C---CEEEEEECC-----CEEEEEEC---------------
Q ss_conf 1364104753-------------388528999985----9---989999589-----90999927---------------
Q 000654 296 IEEVGSSVLY-------------GHNARVWDCCLT----D---SFIITAGED-----CTCRVWGS--------------- 335 (1371)
Q Consensus 296 ~~~~~~~~~~-------------gh~~~I~~i~~s----~---~~Lvtgs~D-----g~I~IWd~--------------- 335 (1371)
+......... .|...|++++|+ + .++++++.+ ..+.+|++
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 88885012345787776788885556774579997349998878999688777788852899954789875554255654
Q ss_pred ----CCCEEEEEE-ECCCCCEEEEEECC----------CCCEEEEEECCCCEEEEECCC-CCC-CCCCCCCCCCCCCCCC
Q ss_conf ----994899992-02595779999949----------998999998799499999498-875-4335777620016874
Q 000654 336 ----DGKQLKMIK-EHIGRGIWRCLYDS----------LSSLLVTAGFDSAIKVHQFQA-FLP-GSLESHPEAKEFNGRT 398 (1371)
Q Consensus 336 ----~g~~i~~l~-~h~~~~V~sia~sp----------dg~~LvTgg~Dg~I~iwdl~~-~~~-~~l~~~~~~~~~~~~~ 398 (1371)
..+....+. .+.. .|..+.+.+ +...+++++.|+.+++|++.. ... .....+
T Consensus 326 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~---------- 394 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNV-PIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFP---------- 394 (902)
T ss_dssp HHHHSCSEEEEECCSSSS-CEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSC----------
T ss_pred HHHCCCCCEEEEECCCCC-CEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCC----------
T ss_conf 664174522787418999-547999977889886778785069999179848999789998556555689----------
Q ss_pred CEEEEEECCCCCCEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC-----CCCEEEEEEEECCCCCEEEEEEC
Q ss_conf 1799541697542552157786379999912990999991893899996117-----87504896740589548997305
Q 000654 399 EIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDM-----DSVNWNKILQVSEGMPIICMDLL 473 (1371)
Q Consensus 399 ~i~s~~~~~~~~~~~~~~~~~~~V~~iafs~d~~llv~t~~G~i~~~~l~~~-----~~~~w~~i~~~~~~~~I~~ld~~ 473 (1371)
..+..+...|++++|++.... +|.. ....| .+.++.. .+..+.
T Consensus 395 --------------~~l~~~~~~v~~~~~s~~~~~-------------~w~~~~~~~~~~~~--~l~G~~~-~v~sv~-- 442 (902)
T 2oaj_A 395 --------------QNLSWLRPLATTSMAASVPNK-------------LWLGALSAAQNKDY--LLKGGVR-TKRQKL-- 442 (902)
T ss_dssp --------------GGGTTBTTBEEEEEEEEEEHH-------------HHHHHHHTTBCCCC--SCCCSBC-CCCCCC--
T ss_pred --------------CCCCCCCCCEEEEEEEECCHH-------------HHHHHHHCCCCCCC--CCCCCCC-CCCCCC--
T ss_conf --------------852235897248999974999-------------99888860469997--5457857-787533--
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEC----CCCCCCEEEEEEEECCCCCEEEEECCCCCEEE
Q ss_conf 89998888999799999189869999982783355112456531----57544133789954199819999838991999
Q 000654 474 SNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS----AGIERQLLGTYWCKSLGHRFIFTADPKGRLKL 549 (1371)
Q Consensus 474 ~~~~~~s~~~~~lla~gs~dG~I~iwdi~~~~~~~~~~~~~~~~----~~~~~~il~~~~~~s~d~~~Lvs~s~dg~I~i 549 (1371)
+ .++++++++|+.|+.|++|++.++............. ..+...+. .+++++++++|++++.|+.|++
T Consensus 443 -----~-spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~--svafspdg~~LAsgs~DgtV~l 514 (902)
T 2oaj_A 443 -----P-AEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVD--KISFAAETLELAVSIETGDVVL 514 (902)
T ss_dssp -----C-CSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEE--EEEEETTTTEEEEEETTSCEEE
T ss_pred -----C-CCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEE--EEEECCCCCEEEEEECCCEEEE
T ss_conf -----3-6667589996589838999787764567736775015413778887646--9996389996999945857999
Q ss_pred EECCCCCCCCC----------CC-----C----------------CCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf 94799998643----------34-----6----------------76420111223402359818999831499789985
Q 000654 550 WQLCDPFSSVC----------YE-----S----------------SKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCG 598 (1371)
Q Consensus 550 Wdi~~~~~~~~----------~~-----~----------------~~~~~l~l~~~~~~~h~~~Itsl~~spdg~lLatG 598 (1371)
|++........ .. . .....+.+... ...|...|++++|+||| +||+|
T Consensus 515 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-l~~h~~~V~svafSpdG-~lAsg 592 (902)
T 2oaj_A 515 FKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTA-VHANKGKTSAINNSNIG-FVGIA 592 (902)
T ss_dssp EEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEE-ECCCSCSEEEEEECBTS-EEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-EECCCCCEEEEEECCCC-EEEEE
T ss_conf 99248655575455778665113455134679654322423689887776014699-98688867799964876-89999
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-----ECCCCCEEEEEECCCCCEEEEEE---E
Q ss_conf 388809999768532244343441001664211234587676999996-----40898229999749974999999---4
Q 000654 599 DLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVA-----KLRSNQTEIRSTGGDGCICYLEY---D 670 (1371)
Q Consensus 599 s~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~hg~~~VTsV~~~-----~~~~d~~~l~T~g~DG~I~iW~l---~ 670 (1371)
+.|++|++||+...... .+ ..+..+...|. ..|++|+|+ +.++++.+|++++.||+|++|++ .
T Consensus 593 s~D~tv~lwd~~~~~~~-------~~-~~~~~~~~gh~-~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~ 663 (902)
T 2oaj_A 593 YAAGSLMLIDRRGPAII-------YM-ENIREISGAQS-ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPAS 663 (902)
T ss_dssp ETTSEEEEEETTTTEEE-------EE-EEGGGTCSSCC-CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECG
T ss_pred ECCCCEEEEECCCCEEE-------EE-EEHHHHCCCCC-CCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCC
T ss_conf 58976999988898399-------97-02467264666-61399999998417898763389999568739999995589
Q ss_pred CCCCCEEEEE
Q ss_conf 5986302320
Q 000654 671 KDRESLEFIG 680 (1371)
Q Consensus 671 ~~~~~~~~~~ 680 (1371)
.++....+.+
T Consensus 664 ~g~~~~~~~~ 673 (902)
T 2oaj_A 664 GGKFDVQLMD 673 (902)
T ss_dssp GGCEEEEEEE
T ss_pred CCCEEEEECC
T ss_conf 9868999667
Done!