BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000655
(1370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QAZ|C Chain C, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|F Chain F, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|I Chain I, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|L Chain L, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|O Chain O, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|R Chain R, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|U Chain U, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|X Chain X, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|AA Chain a, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|DD Chain d, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|GG Chain g, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|JJ Chain j, Il-2 Mutant D10 Ternary Complex
Length = 202
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 24/104 (23%)
Query: 210 LFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKL 269
L+ VV L DP +QATQ+L + + P P N+ L KL
Sbjct: 72 LYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLH------------------KL 113
Query: 270 DPSYQE-TWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLY 312
S E W++ +N E L V TDW +++TEQ V Y
Sbjct: 114 SESQLELNWNNRFLNHCLEHL-VQYRTDW----DHSWTEQSVDY 152
>pdb|2B5I|C Chain C, Cytokine Receptor Complex
pdb|3BPL|C Chain C, Crystal Structure Of The Il4-Il4r-Common Gamma Ternary
Complex
Length = 199
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 24/104 (23%)
Query: 210 LFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKL 269
L+ VV L DP +QATQ+L + + P P N+ L KL
Sbjct: 69 LYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLH------------------KL 110
Query: 270 DPSYQE-TWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLY 312
S E W++ +N E L V TDW +++TEQ V Y
Sbjct: 111 SESQLELNWNNRFLNHCLEHL-VQYRTDW----DHSWTEQSVDY 149
>pdb|3QB7|C Chain C, Interleukin-4 Mutant Rga Bound To Cytokine Receptor Common
Gamma
pdb|3QB7|D Chain D, Interleukin-4 Mutant Rga Bound To Cytokine Receptor Common
Gamma
Length = 203
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 24/104 (23%)
Query: 210 LFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKL 269
L+ VV L DP +QATQ+L + + P P N+ L KL
Sbjct: 73 LYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLH------------------KL 114
Query: 270 DPSYQE-TWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLY 312
S E W++ +N E L V TDW +++TEQ V Y
Sbjct: 115 SESQLELNWNNRFLNHCLEHL-VQYRTDW----DHSWTEQSVDY 153
>pdb|2ERJ|C Chain C, Crystal Structure Of The Heterotrimeric Interleukin-2
Receptor In Complex With Interleukin-2
pdb|2ERJ|G Chain G, Crystal Structure Of The Heterotrimeric Interleukin-2
Receptor In Complex With Interleukin-2
Length = 247
Score = 34.7 bits (78), Expect = 0.42, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 24/104 (23%)
Query: 210 LFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKL 269
L+ VV L DP +QATQ+L + + P P N+ L KL
Sbjct: 107 LYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLH------------------KL 148
Query: 270 DPSYQE-TWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLY 312
S E W++ +N E L V TDW +++TEQ V Y
Sbjct: 149 SESQLELNWNNRFLNHCLEHL-VQYRTDW----DHSWTEQSVDY 187
>pdb|4GS7|C Chain C, Structure Of The Interleukin-15 Quaternary Complex
Length = 203
Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 24/104 (23%)
Query: 210 LFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKL 269
L+ VV L DP +QATQ+L + + P P N+ L KL
Sbjct: 73 LYQTFVVQLQDPREPRRQATQMLXLQNLVIPWAPENLTLH------------------KL 114
Query: 270 DPSYQE-TWDDMIINFLAESLDVVQETDWLISLGNAFTEQYVLY 312
S E W++ +N E L V TDW +++TEQ V Y
Sbjct: 115 SESQLELNWNNRFLNHCLEHL-VQYRTDW----DHSWTEQSVDY 153
>pdb|2GGS|A Chain A, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose
Reductase From Sulfolobus Tokodaii
pdb|2GGS|B Chain B, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose
Reductase From Sulfolobus Tokodaii
Length = 273
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 337 NYVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLF 392
+YV D YK+ +I P N GL+K +G A D+++ GI N G ++
Sbjct: 108 DYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFALQDDSLIIRTSGIFRNKGFPIY 163
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 1118 DDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1177
+D D +V ++A +CL ++ +EP+L + + + N + R A AFG++
Sbjct: 341 EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNI----TADNWRNREAAVMAFGSI 396
Query: 1178 SNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQ 1213
+ QR + +H LP ++ + D L V++
Sbjct: 397 MDGPDKVQRTYY---VHQALPSILNLMNDQSLQVKE 429
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 1118 DDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1177
+D D +V ++A +CL ++ +EP+L + + + N + R A AFG++
Sbjct: 341 EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNI----TADNWRNREAAVMAFGSI 396
Query: 1178 SNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQ 1213
+ QR + +H LP ++ + D L V++
Sbjct: 397 MDGPDKVQRTYY---VHQALPSILNLMNDQSLQVKE 429
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,949,092
Number of Sequences: 62578
Number of extensions: 1319565
Number of successful extensions: 3048
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3045
Number of HSP's gapped (non-prelim): 10
length of query: 1370
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1259
effective length of database: 8,027,179
effective search space: 10106218361
effective search space used: 10106218361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)