Query 000655
Match_columns 1370
No_of_seqs 261 out of 386
Neff 6.9
Searched_HMMs 46136
Date Mon Apr 1 21:34:46 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2032 Uncharacterized conser 100.0 6.1E-55 1.3E-59 499.0 33.6 491 823-1342 11-532 (533)
2 KOG2023 Nuclear transport rece 99.6 2E-12 4.4E-17 153.5 32.5 569 666-1347 86-781 (885)
3 KOG2171 Karyopherin (importin) 99.3 1.7E-07 3.7E-12 119.6 49.5 523 750-1345 105-717 (1075)
4 KOG2171 Karyopherin (importin) 99.2 9.1E-06 2E-10 104.3 56.6 775 342-1300 119-1001(1075)
5 PRK09687 putative lyase; Provi 99.1 6.9E-09 1.5E-13 119.5 20.1 226 1029-1338 53-279 (280)
6 PRK09687 putative lyase; Provi 99.0 1.8E-08 3.9E-13 116.0 21.3 224 1072-1341 25-250 (280)
7 KOG2032 Uncharacterized conser 99.0 5.2E-08 1.1E-12 114.4 22.9 490 448-1098 21-530 (533)
8 PRK13800 putative oxidoreducta 98.9 2.8E-08 6E-13 131.9 21.3 243 1031-1339 622-865 (897)
9 PRK13800 putative oxidoreducta 98.9 7.4E-08 1.6E-12 128.0 22.6 242 1029-1337 651-895 (897)
10 KOG1824 TATA-binding protein-i 98.7 0.0031 6.7E-08 79.6 68.0 963 59-1344 46-1098(1233)
11 PTZ00429 beta-adaptin; Provisi 98.7 3.4E-06 7.4E-11 108.2 28.5 309 1006-1340 46-396 (746)
12 PLN03200 cellulose synthase-in 98.6 4.7E-05 1E-09 104.9 36.1 270 1031-1343 447-725 (2102)
13 PF01602 Adaptin_N: Adaptin N 98.5 8.2E-06 1.8E-10 102.6 24.6 307 1005-1343 19-335 (526)
14 KOG1824 TATA-binding protein-i 98.4 0.025 5.4E-07 71.9 52.3 511 751-1340 200-760 (1233)
15 TIGR02270 conserved hypothetic 98.4 2.5E-05 5.4E-10 94.4 21.3 207 1072-1340 88-295 (410)
16 KOG1242 Protein containing ada 98.3 3E-05 6.5E-10 94.5 21.5 302 1029-1342 133-445 (569)
17 PLN03200 cellulose synthase-in 98.3 0.00054 1.2E-08 94.9 35.2 270 1030-1342 488-765 (2102)
18 PF01602 Adaptin_N: Adaptin N 98.3 7.1E-06 1.5E-10 103.1 16.1 309 1015-1349 64-378 (526)
19 PF10508 Proteasom_PSMB: Prote 98.2 0.0007 1.5E-08 84.8 28.6 298 1035-1341 43-366 (503)
20 KOG0213 Splicing factor 3b, su 98.1 0.013 2.7E-07 72.5 37.2 299 1007-1344 696-1027(1172)
21 KOG0211 Protein phosphatase 2A 98.1 0.0017 3.7E-08 83.3 31.3 293 1036-1340 361-663 (759)
22 KOG0915 Uncharacterized conser 98.0 0.012 2.6E-07 78.0 35.1 323 977-1304 941-1313(1702)
23 KOG1241 Karyopherin (importin) 98.0 0.036 7.8E-07 69.3 36.6 522 768-1337 95-712 (859)
24 KOG0166 Karyopherin (importin) 97.9 0.00024 5.2E-09 86.4 17.3 292 1032-1340 68-392 (514)
25 KOG1242 Protein containing ada 97.8 0.014 3E-07 71.9 30.0 517 674-1335 21-558 (569)
26 TIGR02270 conserved hypothetic 97.8 0.0012 2.6E-08 80.1 19.9 123 1069-1224 53-176 (410)
27 PF12348 CLASP_N: CLASP N term 97.7 0.00035 7.7E-09 78.2 13.7 182 1120-1342 19-207 (228)
28 PTZ00429 beta-adaptin; Provisi 97.7 0.01 2.2E-07 76.9 28.3 289 1005-1318 116-412 (746)
29 COG5181 HSH155 U2 snRNP splice 97.6 0.33 7.1E-06 59.6 38.6 292 1025-1336 599-907 (975)
30 COG1413 FOG: HEAT repeat [Ener 97.6 0.0013 2.9E-08 78.0 15.9 110 1070-1211 43-153 (335)
31 KOG2023 Nuclear transport rece 97.5 0.059 1.3E-06 66.5 28.4 518 746-1340 153-731 (885)
32 COG1413 FOG: HEAT repeat [Ener 97.5 0.0057 1.2E-07 72.6 19.7 267 1029-1350 42-313 (335)
33 KOG1060 Vesicle coat complex A 97.4 0.024 5.1E-07 70.9 24.4 248 1072-1340 110-457 (968)
34 KOG1241 Karyopherin (importin) 97.4 0.42 9.2E-06 60.3 34.3 467 756-1344 28-533 (859)
35 KOG0213 Splicing factor 3b, su 97.4 0.77 1.7E-05 57.6 37.6 355 972-1349 730-1124(1172)
36 COG5181 HSH155 U2 snRNP splice 97.4 0.044 9.6E-07 66.7 24.8 351 977-1343 301-761 (975)
37 KOG0166 Karyopherin (importin) 97.3 0.0038 8.2E-08 76.3 15.6 272 1035-1345 157-440 (514)
38 PF13646 HEAT_2: HEAT repeats; 97.2 0.00069 1.5E-08 63.7 6.3 86 1073-1175 2-88 (88)
39 PF12348 CLASP_N: CLASP N term 97.2 0.0023 5E-08 71.6 11.5 179 1047-1234 24-216 (228)
40 PF10508 Proteasom_PSMB: Prote 97.2 0.026 5.7E-07 70.9 21.6 281 1029-1343 118-422 (503)
41 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00081 1.8E-08 57.9 5.6 55 1282-1339 1-55 (55)
42 PF13646 HEAT_2: HEAT repeats; 97.0 0.005 1.1E-07 57.8 10.1 86 1198-1337 2-88 (88)
43 PF05004 IFRD: Interferon-rela 96.9 0.038 8.3E-07 65.0 18.6 213 1110-1344 45-260 (309)
44 KOG0211 Protein phosphatase 2A 96.9 0.012 2.7E-07 75.7 15.1 246 1046-1336 214-461 (759)
45 PF12717 Cnd1: non-SMC mitotic 96.8 0.021 4.6E-07 61.7 14.7 165 1046-1219 4-174 (178)
46 KOG4224 Armadillo repeat prote 96.8 0.0069 1.5E-07 69.6 11.0 144 1161-1340 345-492 (550)
47 COG5096 Vesicle coat complex, 96.7 0.14 3E-06 65.9 22.6 295 1019-1340 81-385 (757)
48 PF13513 HEAT_EZ: HEAT-like re 96.5 0.0044 9.5E-08 53.3 5.1 52 1084-1135 1-55 (55)
49 PF12719 Cnd3: Nuclear condens 96.5 0.15 3.3E-06 59.7 19.6 132 1067-1203 23-163 (298)
50 KOG1062 Vesicle coat complex A 96.2 0.19 4.2E-06 63.6 19.0 297 1023-1346 65-384 (866)
51 KOG2025 Chromosome condensatio 96.2 0.24 5.3E-06 61.8 19.4 165 1027-1213 41-211 (892)
52 PF12717 Cnd1: non-SMC mitotic 96.2 0.021 4.6E-07 61.7 9.7 113 1083-1208 1-114 (178)
53 KOG1059 Vesicle coat complex A 96.2 0.56 1.2E-05 58.8 22.1 167 1005-1179 120-328 (877)
54 PF12755 Vac14_Fab1_bd: Vacuol 96.2 0.014 3E-07 56.6 7.0 86 1126-1216 4-89 (97)
55 smart00638 LPD_N Lipoprotein N 96.1 0.16 3.5E-06 65.0 18.7 207 981-1218 346-572 (574)
56 PF12755 Vac14_Fab1_bd: Vacuol 95.9 0.011 2.3E-07 57.5 4.9 90 1086-1177 2-94 (97)
57 cd00020 ARM Armadillo/beta-cat 95.9 0.0095 2E-07 58.7 4.7 106 1071-1178 8-119 (120)
58 COG5240 SEC21 Vesicle coat com 95.8 7.1 0.00015 48.3 35.5 509 764-1340 23-554 (898)
59 PF02985 HEAT: HEAT repeat; I 95.8 0.012 2.7E-07 44.5 3.8 30 1313-1343 2-31 (31)
60 KOG0212 Uncharacterized conser 95.7 1.4 3E-05 54.2 22.3 332 980-1346 27-411 (675)
61 KOG1243 Protein kinase [Genera 95.7 0.077 1.7E-06 66.5 12.3 281 972-1347 234-521 (690)
62 PF01347 Vitellogenin_N: Lipop 95.7 0.099 2.1E-06 67.5 14.0 166 1028-1219 429-617 (618)
63 cd00020 ARM Armadillo/beta-cat 95.6 0.038 8.3E-07 54.3 7.8 111 1108-1223 7-119 (120)
64 COG5240 SEC21 Vesicle coat com 95.4 2.2 4.7E-05 52.4 22.5 310 1005-1340 203-515 (898)
65 PF05804 KAP: Kinesin-associat 95.4 0.45 9.8E-06 61.5 18.3 95 1027-1121 287-385 (708)
66 KOG1943 Beta-tubulin folding c 95.4 0.45 9.7E-06 62.2 17.9 256 1066-1340 337-610 (1133)
67 KOG1240 Protein kinase contain 95.4 0.21 4.5E-06 65.6 15.0 252 1027-1300 459-728 (1431)
68 PF04826 Arm_2: Armadillo-like 95.4 0.1 2.2E-06 59.6 11.2 144 1030-1179 12-163 (254)
69 KOG1059 Vesicle coat complex A 95.3 3.5 7.6E-05 52.2 24.2 198 862-1137 153-365 (877)
70 KOG0567 HEAT repeat-containing 95.3 0.85 1.8E-05 51.4 17.3 189 1110-1340 38-248 (289)
71 KOG1062 Vesicle coat complex A 95.2 14 0.0003 47.7 30.6 379 872-1341 128-544 (866)
72 COG5096 Vesicle coat complex, 95.2 0.41 8.8E-06 61.7 16.5 189 1005-1208 32-220 (757)
73 KOG0915 Uncharacterized conser 95.2 0.67 1.4E-05 62.5 18.5 277 1026-1346 814-1115(1702)
74 KOG0212 Uncharacterized conser 95.1 12 0.00027 46.4 27.8 372 564-1100 23-407 (675)
75 PF05004 IFRD: Interferon-rela 95.1 1.2 2.7E-05 52.5 19.2 232 1074-1330 47-291 (309)
76 KOG2062 26S proteasome regulat 94.9 0.7 1.5E-05 58.2 16.8 265 1002-1346 348-658 (929)
77 KOG2259 Uncharacterized conser 94.9 0.41 8.9E-06 59.5 14.7 248 1029-1334 233-509 (823)
78 KOG1248 Uncharacterized conser 94.8 22 0.00048 47.8 64.3 204 1102-1341 691-898 (1176)
79 PF14225 MOR2-PAG1_C: Cell mor 94.8 2.3 5E-05 48.9 19.9 220 1107-1340 6-250 (262)
80 KOG1240 Protein kinase contain 94.5 1 2.3E-05 59.4 17.5 240 1047-1345 440-689 (1431)
81 KOG2259 Uncharacterized conser 94.2 1.2 2.6E-05 55.5 16.5 291 1025-1340 112-438 (823)
82 KOG1020 Sister chromatid cohes 94.2 34 0.00074 47.3 34.3 467 767-1340 859-1404(1692)
83 KOG2956 CLIP-associating prote 94.1 0.66 1.4E-05 55.9 13.6 193 1004-1200 299-498 (516)
84 KOG1077 Vesicle coat complex A 93.9 4 8.7E-05 51.5 19.9 140 1036-1183 80-220 (938)
85 KOG1058 Vesicle coat complex C 93.9 3.3 7.2E-05 52.6 19.3 123 1007-1136 35-162 (948)
86 KOG1991 Nuclear transport rece 93.4 7.2 0.00016 51.2 21.9 313 1007-1334 436-793 (1010)
87 KOG2274 Predicted importin 9 [ 93.2 38 0.00082 44.5 36.2 60 782-842 728-787 (1005)
88 KOG2956 CLIP-associating prote 93.2 2.7 5.9E-05 50.9 16.5 184 1043-1236 300-490 (516)
89 PF12460 MMS19_C: RNAPII trans 93.1 28 0.0006 42.9 27.2 325 873-1221 27-391 (415)
90 KOG4653 Uncharacterized conser 93.0 1 2.2E-05 57.7 13.4 169 1011-1182 746-921 (982)
91 KOG1820 Microtubule-associated 92.5 3.8 8.1E-05 54.0 18.0 185 1115-1342 260-444 (815)
92 KOG1820 Microtubule-associated 92.4 1 2.2E-05 59.0 12.7 190 1037-1235 260-455 (815)
93 KOG1060 Vesicle coat complex A 92.3 15 0.00032 47.4 21.8 270 1034-1339 39-348 (968)
94 COG5064 SRP1 Karyopherin (impo 92.2 1.1 2.5E-05 51.6 11.3 267 1035-1343 119-445 (526)
95 COG5215 KAP95 Karyopherin (imp 92.0 41 0.00089 42.0 37.1 288 1026-1323 362-691 (858)
96 PF02985 HEAT: HEAT repeat; I 91.6 0.089 1.9E-06 39.8 1.3 28 1072-1099 2-29 (31)
97 KOG1967 DNA repair/transcripti 91.5 3.7 8.1E-05 53.3 15.7 213 1002-1220 786-1020(1030)
98 PF10363 DUF2435: Protein of u 91.3 0.81 1.7E-05 44.1 7.7 69 1270-1342 5-73 (92)
99 PF01347 Vitellogenin_N: Lipop 91.3 2.3 5E-05 55.0 14.5 149 1066-1234 431-601 (618)
100 KOG1517 Guanine nucleotide bin 91.2 1 2.2E-05 58.6 10.5 141 1084-1224 571-732 (1387)
101 KOG1525 Sister chromatid cohes 90.9 87 0.0019 43.7 29.9 217 486-793 180-406 (1266)
102 KOG1061 Vesicle coat complex A 90.7 4 8.6E-05 52.3 14.9 162 1007-1179 28-189 (734)
103 cd00256 VATPase_H VATPase_H, r 90.5 53 0.0011 40.6 25.5 292 1032-1340 103-424 (429)
104 smart00638 LPD_N Lipoprotein N 90.5 2.9 6.3E-05 53.7 14.3 143 1066-1228 393-549 (574)
105 KOG4653 Uncharacterized conser 90.3 10 0.00022 49.1 17.9 224 1077-1344 734-967 (982)
106 KOG1949 Uncharacterized conser 89.6 5.9 0.00013 50.0 14.6 142 1035-1179 179-331 (1005)
107 KOG1517 Guanine nucleotide bin 89.3 2.9 6.2E-05 54.8 12.1 192 1107-1342 475-672 (1387)
108 KOG0414 Chromosome condensatio 89.2 12 0.00026 50.1 17.8 153 1142-1328 293-460 (1251)
109 COG5218 YCG1 Chromosome conden 89.0 2.3 5.1E-05 52.3 10.6 190 1026-1221 45-263 (885)
110 KOG1061 Vesicle coat complex A 88.7 14 0.00031 47.5 17.6 149 1025-1179 116-268 (734)
111 KOG4535 HEAT and armadillo rep 88.7 18 0.0004 44.0 17.4 226 1088-1340 367-602 (728)
112 PF04826 Arm_2: Armadillo-like 88.7 7.9 0.00017 44.4 14.3 141 1031-1180 55-206 (254)
113 PF12830 Nipped-B_C: Sister ch 88.4 1.6 3.5E-05 47.7 8.3 72 1265-1343 5-77 (187)
114 KOG0567 HEAT repeat-containing 88.3 1.9 4.2E-05 48.7 8.7 49 1160-1222 230-278 (289)
115 PF10363 DUF2435: Protein of u 87.9 1.8 3.9E-05 41.7 7.2 68 1032-1099 5-72 (92)
116 PF05918 API5: Apoptosis inhib 87.8 67 0.0015 40.9 22.5 127 1042-1180 34-164 (556)
117 KOG0803 Predicted E3 ubiquitin 87.7 11 0.00024 52.0 16.7 221 1110-1346 43-268 (1312)
118 KOG1078 Vesicle coat complex C 87.5 1.1E+02 0.0023 40.1 35.1 268 1048-1340 226-531 (865)
119 KOG1058 Vesicle coat complex C 87.4 33 0.00071 44.2 19.1 267 1027-1300 96-428 (948)
120 KOG2025 Chromosome condensatio 87.4 11 0.00024 47.9 15.0 195 1027-1228 82-299 (892)
121 KOG0414 Chromosome condensatio 86.9 7.2 0.00016 52.1 13.8 187 1005-1209 893-1085(1251)
122 PF12719 Cnd3: Nuclear condens 86.7 32 0.00069 40.4 18.3 136 1027-1168 23-174 (298)
123 PF14500 MMS19_N: Dos2-interac 86.4 11 0.00024 43.5 13.8 226 1074-1340 3-236 (262)
124 PF13251 DUF4042: Domain of un 86.3 13 0.00028 40.5 13.5 162 1165-1340 1-173 (182)
125 KOG4224 Armadillo repeat prote 86.2 4.6 9.9E-05 47.4 10.3 128 1082-1222 179-319 (550)
126 PF08064 UME: UME (NUC010) dom 85.7 1.3 2.7E-05 44.0 5.1 87 1072-1160 13-106 (107)
127 smart00802 UME Domain in UVSB 85.6 1.4 3E-05 43.7 5.2 88 1071-1160 12-106 (107)
128 COG5116 RPN2 26S proteasome re 85.6 10 0.00022 46.9 13.1 132 1157-1347 523-656 (926)
129 PF11864 DUF3384: Domain of un 85.3 89 0.0019 39.2 22.2 295 1010-1349 8-343 (464)
130 PF08167 RIX1: rRNA processing 85.1 4.2 9E-05 43.5 9.0 119 1026-1150 21-155 (165)
131 PF08064 UME: UME (NUC010) dom 84.9 3 6.4E-05 41.4 7.2 77 1122-1201 29-105 (107)
132 PF14500 MMS19_N: Dos2-interac 84.5 8.8 0.00019 44.3 11.9 198 1033-1236 2-216 (262)
133 KOG1967 DNA repair/transcripti 84.4 3.2 6.9E-05 53.9 8.8 129 1005-1133 883-1020(1030)
134 PF14868 DUF4487: Domain of un 84.1 1E+02 0.0022 39.5 21.7 261 1073-1345 269-556 (559)
135 KOG1243 Protein kinase [Genera 82.4 2.4 5.3E-05 53.6 6.6 192 1027-1228 327-519 (690)
136 PF03224 V-ATPase_H_N: V-ATPas 82.1 27 0.00059 41.3 15.1 161 1109-1283 106-274 (312)
137 KOG0946 ER-Golgi vesicle-tethe 81.9 1.8E+02 0.0039 38.1 24.3 108 763-896 122-243 (970)
138 KOG1293 Proteins containing ar 81.4 8.7 0.00019 48.5 10.7 141 1164-1340 391-532 (678)
139 COG5116 RPN2 26S proteasome re 80.8 11 0.00024 46.6 10.9 162 1116-1337 524-689 (926)
140 COG5231 VMA13 Vacuolar H+-ATPa 80.6 30 0.00064 40.4 13.6 73 1269-1343 357-430 (432)
141 KOG2973 Uncharacterized conser 78.6 36 0.00079 39.7 13.6 61 1074-1136 7-70 (353)
142 KOG1525 Sister chromatid cohes 77.1 1.8E+02 0.0038 40.9 21.7 291 976-1340 21-328 (1266)
143 COG5098 Chromosome condensatio 75.4 16 0.00035 46.2 10.4 130 1011-1140 280-418 (1128)
144 PF08506 Cse1: Cse1; InterPro 74.3 65 0.0014 39.2 15.3 52 1279-1336 319-370 (370)
145 KOG2062 26S proteasome regulat 73.3 3.9 8.5E-05 51.9 4.6 64 1267-1340 553-617 (929)
146 COG5218 YCG1 Chromosome conden 73.1 12 0.00025 46.6 8.4 86 1250-1341 70-161 (885)
147 PF12460 MMS19_C: RNAPII trans 73.1 2.4E+02 0.0052 34.8 30.6 132 1006-1139 247-396 (415)
148 KOG2160 Armadillo/beta-catenin 72.7 56 0.0012 38.9 13.5 138 1041-1180 94-241 (342)
149 PF12074 DUF3554: Domain of un 72.1 40 0.00087 40.3 12.9 186 1027-1223 19-234 (339)
150 PF13251 DUF4042: Domain of un 71.7 9.3 0.0002 41.6 6.6 70 1111-1180 104-175 (182)
151 KOG1943 Beta-tubulin folding c 71.5 3.8E+02 0.0083 36.5 35.8 481 762-1342 340-882 (1133)
152 COG5064 SRP1 Karyopherin (impo 70.2 23 0.00051 41.4 9.5 210 1090-1339 135-354 (526)
153 PF00514 Arm: Armadillo/beta-c 69.9 5.5 0.00012 31.9 3.4 29 1311-1340 12-40 (41)
154 PF04118 Dopey_N: Dopey, N-ter 69.8 49 0.0011 39.1 12.5 169 1123-1335 70-248 (307)
155 KOG2122 Beta-catenin-binding p 69.7 1E+02 0.0022 42.8 16.1 212 921-1139 313-603 (2195)
156 KOG2137 Protein kinase [Signal 69.3 35 0.00076 43.9 11.7 178 1028-1216 347-529 (700)
157 PF10274 ParcG: Parkin co-regu 69.1 27 0.00057 38.1 9.2 73 1107-1179 37-109 (183)
158 KOG2022 Nuclear transport rece 69.0 3.9E+02 0.0086 35.7 21.1 328 1003-1337 481-914 (982)
159 KOG2973 Uncharacterized conser 68.7 10 0.00022 44.0 6.2 65 1270-1340 5-70 (353)
160 smart00802 UME Domain in UVSB 68.3 16 0.00034 36.3 6.8 74 1124-1200 31-104 (107)
161 PF14664 RICTOR_N: Rapamycin-i 67.1 1.6E+02 0.0035 35.9 16.5 144 1070-1221 25-173 (371)
162 KOG4535 HEAT and armadillo rep 66.5 12 0.00027 45.4 6.6 119 1074-1192 395-526 (728)
163 PF13001 Ecm29: Proteasome sta 65.5 54 0.0012 41.6 12.6 157 1108-1300 319-491 (501)
164 KOG2160 Armadillo/beta-catenin 65.3 14 0.00029 43.9 6.6 69 1272-1341 128-196 (342)
165 PF08569 Mo25: Mo25-like; Int 65.1 2.1E+02 0.0045 34.4 16.6 174 1160-1340 86-282 (335)
166 KOG3678 SARM protein (with ste 65.0 1.1E+02 0.0023 37.5 13.7 208 1123-1342 197-453 (832)
167 KOG1949 Uncharacterized conser 63.2 14 0.00031 46.8 6.5 107 1027-1136 217-330 (1005)
168 PF08167 RIX1: rRNA processing 63.2 28 0.0006 37.3 8.1 81 1263-1344 20-100 (165)
169 PF11698 V-ATPase_H_C: V-ATPas 62.2 17 0.00036 36.8 5.7 81 1260-1342 35-116 (119)
170 cd06561 AlkD_like A new struct 62.2 28 0.00061 37.8 8.2 84 1250-1342 88-171 (197)
171 PF10274 ParcG: Parkin co-regu 61.4 34 0.00073 37.3 8.3 88 1069-1156 37-130 (183)
172 PF05804 KAP: Kinesin-associat 61.4 23 0.0005 46.4 8.3 118 1083-1208 263-385 (708)
173 KOG2933 Uncharacterized conser 55.6 48 0.001 38.8 8.6 96 1123-1228 185-281 (334)
174 KOG0392 SNF2 family DNA-depend 53.9 62 0.0013 44.1 10.1 110 1070-1179 816-925 (1549)
175 PF14664 RICTOR_N: Rapamycin-i 53.2 2.3E+02 0.005 34.5 14.5 34 1312-1346 335-369 (371)
176 KOG4199 Uncharacterized conser 52.3 4.3E+02 0.0092 31.7 15.3 158 1158-1351 291-455 (461)
177 PF10521 DUF2454: Protein of u 52.1 2.3E+02 0.005 33.0 13.9 162 1138-1326 107-279 (282)
178 PF12765 Cohesin_HEAT: HEAT re 51.3 17 0.00037 29.8 3.1 27 1308-1335 15-41 (42)
179 PLN03076 ARF guanine nucleotid 50.7 8.7E+02 0.019 35.8 21.2 323 451-812 1149-1509(1780)
180 KOG2149 Uncharacterized conser 50.0 67 0.0014 38.9 8.9 110 1072-1181 60-172 (393)
181 PF03130 HEAT_PBS: PBS lyase H 49.1 13 0.00028 27.3 1.9 27 1086-1119 1-27 (27)
182 PLN03076 ARF guanine nucleotid 49.1 4.1E+02 0.0088 39.0 17.6 137 1069-1205 1223-1403(1780)
183 PF13001 Ecm29: Proteasome sta 47.2 3.3E+02 0.0071 34.6 15.1 146 1195-1346 237-408 (501)
184 PF08713 DNA_alkylation: DNA a 46.7 2.2E+02 0.0047 31.2 12.1 83 1251-1342 103-185 (213)
185 COG5098 Chromosome condensatio 46.5 63 0.0014 41.3 8.1 105 1072-1179 301-415 (1128)
186 PF12765 Cohesin_HEAT: HEAT re 46.4 23 0.00049 29.0 3.1 25 1069-1093 17-41 (42)
187 PF00514 Arm: Armadillo/beta-c 44.2 30 0.00065 27.7 3.5 29 1195-1223 12-40 (41)
188 KOG1078 Vesicle coat complex C 43.9 9.3E+02 0.02 32.1 20.9 147 1006-1179 14-164 (865)
189 KOG0413 Uncharacterized conser 43.3 72 0.0016 42.3 8.2 127 1066-1209 964-1096(1529)
190 KOG4413 26S proteasome regulat 42.7 6.5E+02 0.014 29.9 20.7 266 1027-1300 34-336 (524)
191 KOG0946 ER-Golgi vesicle-tethe 41.3 1E+03 0.022 31.8 32.0 76 803-897 20-95 (970)
192 PF11865 DUF3385: Domain of un 40.9 1.3E+02 0.0029 32.0 8.8 30 1066-1098 10-39 (160)
193 PF10521 DUF2454: Protein of u 40.0 1.6E+02 0.0035 34.3 10.1 132 1096-1227 107-256 (282)
194 KOG2933 Uncharacterized conser 39.6 5.1E+02 0.011 30.8 13.4 111 1107-1223 87-198 (334)
195 PF11935 DUF3453: Domain of un 39.4 5.1E+02 0.011 29.5 13.8 20 1079-1098 2-21 (239)
196 KOG2137 Protein kinase [Signal 39.0 1.4E+02 0.0031 38.7 9.8 111 1103-1222 384-494 (700)
197 COG5110 RPN1 26S proteasome re 39.0 9.3E+02 0.02 30.7 17.2 228 1069-1340 449-704 (881)
198 COG5234 CIN1 Beta-tubulin fold 38.3 2.5E+02 0.0055 36.4 11.5 120 1101-1222 239-414 (993)
199 PRK14707 hypothetical protein; 37.8 1.7E+03 0.037 33.4 27.6 384 871-1337 734-1155(2710)
200 cd03572 ENTH_epsin_related ENT 37.7 2.1E+02 0.0045 29.3 9.0 90 1251-1342 22-120 (122)
201 KOG0392 SNF2 family DNA-depend 37.2 2.7E+02 0.006 38.5 12.2 162 1066-1227 204-388 (1549)
202 KOG1020 Sister chromatid cohes 36.7 1.1E+03 0.023 33.9 17.5 133 1069-1212 815-948 (1692)
203 PF12830 Nipped-B_C: Sister ch 36.4 2.9E+02 0.0062 30.2 10.8 117 1156-1281 14-143 (187)
204 PRK09169 hypothetical protein; 35.5 1.9E+03 0.04 33.2 38.6 238 972-1228 515-782 (2316)
205 PF11698 V-ATPase_H_C: V-ATPas 35.0 53 0.0011 33.3 4.3 28 1110-1137 88-115 (119)
206 KOG2005 26S proteasome regulat 34.5 5.9E+02 0.013 33.2 13.7 277 1026-1341 411-704 (878)
207 KOG2022 Nuclear transport rece 33.8 1.4E+03 0.029 31.1 29.8 396 316-808 457-882 (982)
208 KOG2274 Predicted importin 9 [ 33.2 1.4E+03 0.03 31.0 41.2 272 1051-1330 471-769 (1005)
209 COG5101 CRM1 Importin beta-rel 33.1 2.5E+02 0.0055 35.9 10.3 85 289-385 487-580 (1053)
210 COG5234 CIN1 Beta-tubulin fold 33.1 9.7E+02 0.021 31.5 15.3 78 1276-1365 699-783 (993)
211 KOG4524 Uncharacterized conser 33.0 1.4E+02 0.003 40.0 8.5 136 1187-1332 581-759 (1014)
212 PF00790 VHS: VHS domain; Int 32.7 2.9E+02 0.0063 28.6 9.6 92 1246-1340 22-117 (140)
213 smart00567 EZ_HEAT E-Z type HE 32.5 42 0.0009 24.9 2.4 28 1085-1119 2-29 (30)
214 KOG1822 Uncharacterized conser 32.5 8.7E+02 0.019 35.5 16.0 221 974-1197 849-1107(2067)
215 smart00288 VHS Domain present 32.4 2.8E+02 0.006 28.6 9.3 88 1251-1340 21-110 (133)
216 PF05536 Neurochondrin: Neuroc 32.4 1.2E+03 0.026 30.0 27.0 259 1055-1349 124-415 (543)
217 cd03561 VHS VHS domain family; 31.4 4E+02 0.0086 27.3 10.3 89 1250-1340 20-111 (133)
218 PF12074 DUF3554: Domain of un 31.2 7.4E+02 0.016 29.5 14.2 86 1087-1179 4-90 (339)
219 COG5209 RCD1 Uncharacterized p 29.8 3.1E+02 0.0067 30.9 9.3 149 1117-1286 109-274 (315)
220 KOG1077 Vesicle coat complex A 29.5 1.4E+03 0.031 30.1 25.6 217 1107-1349 208-442 (938)
221 PF12530 DUF3730: Protein of u 29.3 8.7E+02 0.019 27.4 16.6 153 1007-1163 53-216 (234)
222 KOG4500 Rho/Rac GTPase guanine 29.2 3.2E+02 0.0069 33.7 9.9 74 1066-1139 356-433 (604)
223 PF14961 BROMI: Broad-minded p 28.8 2.8E+02 0.0061 38.3 10.4 197 1073-1281 164-385 (1296)
224 PF14750 INTS2: Integrator com 28.7 1.8E+03 0.039 31.0 18.2 120 1163-1293 325-463 (1049)
225 PRK14707 hypothetical protein; 28.5 2.3E+03 0.05 32.1 28.2 376 923-1358 854-1263(2710)
226 smart00185 ARM Armadillo/beta- 28.2 74 0.0016 24.7 3.4 28 1312-1340 13-40 (41)
227 PF12530 DUF3730: Protein of u 27.7 9.3E+02 0.02 27.2 18.4 193 1005-1206 14-217 (234)
228 cd03568 VHS_STAM VHS domain fa 27.2 4E+02 0.0087 27.9 9.5 87 1251-1339 21-108 (144)
229 PF08713 DNA_alkylation: DNA a 26.8 6E+02 0.013 27.7 11.6 65 1071-1138 121-185 (213)
230 KOG0413 Uncharacterized conser 26.6 5.4E+02 0.012 34.8 11.9 159 1161-1340 483-644 (1529)
231 KOG2759 Vacuolar H+-ATPase V1 26.6 2.4E+02 0.0052 34.6 8.4 83 1002-1092 342-431 (442)
232 PF14228 MOR2-PAG1_mid: Cell m 26.3 2E+03 0.044 30.7 21.5 295 1029-1342 195-573 (1120)
233 cd03568 VHS_STAM VHS domain fa 26.3 6E+02 0.013 26.7 10.6 88 747-837 23-112 (144)
234 PF08569 Mo25: Mo25-like; Int 25.3 8.2E+02 0.018 29.5 12.8 199 1002-1215 54-274 (335)
235 PF11864 DUF3384: Domain of un 25.1 1.4E+03 0.031 28.6 26.3 131 780-937 151-288 (464)
236 cd05394 RasGAP_RASA2 RASA2 (or 25.0 1.2E+03 0.027 27.7 14.2 206 1047-1273 34-267 (313)
237 KOG2759 Vacuolar H+-ATPase V1 25.0 1.4E+03 0.03 28.3 20.0 87 1248-1340 350-437 (442)
238 COG5215 KAP95 Karyopherin (imp 24.6 1.6E+03 0.035 28.9 50.5 390 761-1189 367-820 (858)
239 PF11707 Npa1: Ribosome 60S bi 23.7 1.3E+03 0.028 27.5 16.4 113 765-894 58-187 (330)
240 KOG1293 Proteins containing ar 23.6 1.1E+03 0.024 30.7 13.7 134 1113-1273 424-557 (678)
241 KOG1993 Nuclear transport rece 23.5 3.2E+02 0.0069 36.1 9.1 57 1281-1342 500-557 (978)
242 PF05536 Neurochondrin: Neuroc 23.3 1.7E+03 0.036 28.7 16.5 140 1030-1180 5-169 (543)
243 PF07539 DRIM: Down-regulated 23.2 1E+02 0.0023 32.2 4.3 40 1069-1108 16-55 (141)
244 cd03569 VHS_Hrs_Vps27p VHS dom 22.8 7.3E+02 0.016 25.9 10.4 114 724-840 3-119 (142)
245 PF10304 DUF2411: Domain of un 22.6 1.6E+02 0.0034 23.5 4.1 31 1310-1340 4-34 (36)
246 KOG2011 Sister chromatid cohes 22.1 2.3E+03 0.049 29.8 23.0 139 1069-1219 281-430 (1048)
247 PRK09169 hypothetical protein; 21.7 3E+03 0.066 31.2 27.0 314 972-1336 179-524 (2316)
248 KOG2090 Metalloendopeptidase f 21.0 2.3E+02 0.0049 36.2 7.0 78 678-767 105-186 (704)
249 KOG1248 Uncharacterized conser 20.5 2.5E+03 0.054 29.6 53.9 596 678-1340 146-855 (1176)
250 PF14225 MOR2-PAG1_C: Cell mor 20.0 1.3E+03 0.028 26.8 12.7 85 974-1061 132-219 (262)
No 1
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.1e-55 Score=498.96 Aligned_cols=491 Identities=20% Similarity=0.198 Sum_probs=447.0
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchh----HHHHhhcCcccHHHHHHHHHHHHccCCC
Q 000655 823 RLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQD----AFHAFSQHAVLSFLFLEHLISALNQTPF 898 (1370)
Q Consensus 823 r~~~l~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~----~W~ala~d~~l~~~vL~~LL~~L~~~p~ 898 (1370)
-+....++.++...|.-.++ .+. +.+++|.+. .|..+.-.+....++|++++..+.. ..
T Consensus 11 lqa~qdsv~l~h~~h~~a~~-~~~---------------~s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~-~~ 73 (533)
T KOG2032|consen 11 LEARQDSVVLLHVRHQTAKQ-AVI---------------TAIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGR-EG 73 (533)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHH---------------HcccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhch-hh
Confidence 34455566677777755544 333 578899887 7999999999999999999998776 11
Q ss_pred ccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCC---------
Q 000655 899 VKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSG--------- 969 (1370)
Q Consensus 899 ~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~--------- 969 (1370)
.++++..+...++++.++-||++++|+..+. +.+..|...||+||.-+|+..+++.|+..+.
T Consensus 74 -------~a~sl~~v~~~~a~~~~~~~t~vl~e~~lti--~~g~~v~~lypqlf~llLllvscvlg~k~p~~lqa~~r~~ 144 (533)
T KOG2032|consen 74 -------FAESLLEVLHTQALALNACTTLVLVEPKLTI--ETGNRVMKLYPQLFSLLLLLVSCVLGLKSPDSLQALSRLE 144 (533)
T ss_pred -------hhhhhcchhhhHHHHHHHHHHHHHHHHhhhh--hcCchHHHhhHHHHHHHHHHHHHHhhccCcccHHHHHHHH
Confidence 2223444555678899999999999999998 8899999999999999999999999986551
Q ss_pred --------CCChHHHHHHHHHHHHHhhcchHHHHHHHhcCC-CC---ChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhh
Q 000655 970 --------QHEPLRAILTSFQAFCECVGDLEMRKILARDGE-QN---DKEKWINLIGDVAGCVSIKRPKEVQTICLILTK 1037 (1370)
Q Consensus 970 --------~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~-W~---~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~ 1037 (1370)
...||+.+..+++.+...++.+.+.+..+..++ |. ++..|..|++-++|.|..+.+..++.|+.++..
T Consensus 145 ~~~al~~~~~~pc~~~tatl~cl~lqsa~e~~~~~sde~~~~w~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~s 224 (533)
T KOG2032|consen 145 DVIALLKSLVAPCHSCTATLCCLILQSAEEAIQAVSDEVSRRWSQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLS 224 (533)
T ss_pred hHHHHHHhhhhHHHHhHHHHHHHHHHHhHHHHHHhhhcccchhhhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhccc
Confidence 578999999999999999999999999998876 98 899999999999999999999999999999999
Q ss_pred hhcccccCcchHHHHHHHHhhhcCCc-hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHH
Q 000655 1038 SINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVI 1113 (1370)
Q Consensus 1038 ~L~s~~~~~Ri~a~af~sELl~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~al 1113 (1370)
...|..+.+|++.+|||+|+.+.+.. ...++++++..|.+..+|||..+|.+|+|||||++.+ |++.|.++++.++
T Consensus 225 s~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldai 304 (533)
T KOG2032|consen 225 SITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAI 304 (533)
T ss_pred ccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHH
Confidence 99999999999999999999998755 4577888999999999999999999999999999754 9999999999999
Q ss_pred HhhcccCC-hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 000655 1114 LALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ 1192 (1370)
Q Consensus 1114 l~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ 1192 (1370)
+.||+|.+ ++|++|||.+|.++++.....++++++++|+.|+|+||++|++++|.+||.+||+|+++++|++++.|.||
T Consensus 305 i~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~ 384 (533)
T KOG2032|consen 305 IRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQ 384 (533)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHH
Confidence 99999965 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHH
Q 000655 1193 IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMG 1271 (1370)
Q Consensus 1193 v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~ 1271 (1370)
|.+.+.||++|++|++|.|+.|||.+++.|.+.+.. .+..+|+++. |+.-..+.+|++..|+.|...+||....++.
T Consensus 385 v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~l--d~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t 462 (533)
T KOG2032|consen 385 VKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESL--DTDMARFQAFYNQWCIQLNHIHPDILMLLLT 462 (533)
T ss_pred HHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhh--HHhHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 999999999999999999999999999999999999 8999999874 4344489999999999999999999999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000655 1272 STIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1342 (1370)
Q Consensus 1272 ~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1342 (1370)
....||+|.|+.+|.+|+.+.|...-++.++.+...|.+++..+|.. |.+||.|.|+..|.+|++.+.+.
T Consensus 463 ~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~-l~~dp~pev~~~a~~al~~l~~~ 532 (533)
T KOG2032|consen 463 EDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLST-LWRDPRPEVTDSARKALDLLSVK 532 (533)
T ss_pred hchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHH-HccCCCchhHHHHHHHhhhHhhc
Confidence 99999999999999999999999999999999999999999999999 89999999999999999998753
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2e-12 Score=153.50 Aligned_cols=569 Identities=16% Similarity=0.157 Sum_probs=369.9
Q ss_pred hhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCC--------CCCcc-hhhhhhhhhh-cHHHHHHhcc
Q 000655 666 LCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGS--------SSGID-LELSYGALSS-LEDVIAILRS 735 (1370)
Q Consensus 666 ~~lG~Lvg~l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~--------~~~~~-~~~~~~~l~~-l~d~~~~l~~ 735 (1370)
..+|+.-....+.-+|+++-||-...-.|..+...-.++.||++. +.+++ -|++.++|++ ++|..+.+++
T Consensus 86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds 165 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDS 165 (885)
T ss_pred HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhh
Confidence 578889999999999999999999988888777765555554322 33433 4566788888 6888788888
Q ss_pred CCCCChhHHHH-H---------------HHHHHHccCC------hhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhh
Q 000655 736 DASIDPSEVFN-R---------------IVSSVCILLT------KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTK 793 (1370)
Q Consensus 736 ~~~~~~~~~~~-~---------------i~~~i~~~L~------~~el~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~ 793 (1370)
+....|-+++- + -+..+.+++. ...+..|+.+++.--+|.++.+.+..|..+..+++.
T Consensus 166 ~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 166 DVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred hcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 87777765541 1 1222334443 345678999999999999999999999999999999
Q ss_pred hcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHH
Q 000655 794 RGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFH 873 (1370)
Q Consensus 794 rg~~L~e~dV~~I~~~I~~~L~~i~~~~~r~~~l~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ 873 (1370)
|..++ +|.+-+.+.+-+...+. |-++|- +..++.|.
T Consensus 246 r~dkl----~phl~~IveyML~~tqd-----------------~dE~VA-----------------------LEACEFwl 281 (885)
T KOG2023|consen 246 RPDKL----VPHLDNIVEYMLQRTQD-----------------VDENVA-----------------------LEACEFWL 281 (885)
T ss_pred cHHhc----ccchHHHHHHHHHHccC-----------------cchhHH-----------------------HHHHHHHH
Confidence 99999 66654444443333332 223322 34567999
Q ss_pred HhhcCc---ccHHHHHHHHHHHHccCCCccCCCc---cCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHh
Q 000655 874 AFSQHA---VLSFLFLEHLISALNQTPFVKGDME---KGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKS 947 (1370)
Q Consensus 874 ala~d~---~l~~~vL~~LL~~L~~~p~~~e~~~---~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~ 947 (1370)
++|..| ....+.|+.|..+|-+.+.|.|++. +.+......+++..++ +.+
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDI------------------------kPR 337 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDI------------------------KPR 337 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhc------------------------cch
Confidence 999876 4556677888999999999998542 1222334445555443 233
Q ss_pred hHHHHHHHHHHhhhcccCCCC-------------C------CCChHH-HHHHHHHHHHHhhcchHHHHHHHh---cCCCC
Q 000655 948 YAPVLAALTLQLGSCHGLASS-------------G------QHEPLR-AILTSFQAFCECVGDLEMRKILAR---DGEQN 1004 (1370)
Q Consensus 948 fp~Lf~aLL~ql~~~~~~~~~-------------~------~~~P~~-~aleAlk~ll~~~g~~~~~~~L~~---~g~W~ 1004 (1370)
|.. +-.+|.... + +++.|| .+++.|-+++.---....+-.++. ...|.
T Consensus 338 fhk---------sk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~ 408 (885)
T KOG2023|consen 338 FHK---------SKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWK 408 (885)
T ss_pred hhh---------chhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhh
Confidence 333 223333110 0 466677 577777766643333333444443 25799
Q ss_pred ChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhc--CCchhhHHHHHHHHHHhhcCCC
Q 000655 1005 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRY--SGGFDSLLEQMVEALCRHVSDE 1082 (1370)
Q Consensus 1005 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~--~~~~~~l~~~~i~~L~~~l~D~ 1082 (1370)
-.|.-.-+++.+|.++.++--|++|.++-++++.|++.....|.++.+.++++-+. +......++.++..|.+++-|.
T Consensus 409 vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~ 488 (885)
T KOG2023|consen 409 VREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDS 488 (885)
T ss_pred hhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcc
Confidence 88888899999999999998899999999999999999999999999999998764 2224467788999999999999
Q ss_pred ChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCCh---hHHHHHHHHHHHHh-ccCCcCC------------
Q 000655 1083 SPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDE---SVQLTAVSCLLTIL-KSSSKDA------------ 1143 (1370)
Q Consensus 1083 ~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~---~V~leAm~~L~~lL-~~l~~~~------------ 1143 (1370)
|..|+..|.-+++.+-.. +.-.|...+|..++-.|..+.. .|.+.|+.+|++=. +.+.+..
T Consensus 489 NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~K 568 (885)
T KOG2023|consen 489 NKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEK 568 (885)
T ss_pred cHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHH
Confidence 999999999999977543 5566888888888888876543 48889998888654 2333222
Q ss_pred ----------cch---hHHhHHhhhcCcCcCCChHHHHHHHHHHHHh----hcc--------------------------
Q 000655 1144 ----------VEP---ILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL----SNF-------------------------- 1180 (1370)
Q Consensus 1144 ----------~~~---~l~~i~~~lrpffede~~~vR~aAi~LfG~L----~~~-------------------------- 1180 (1370)
+=| .+-.|+..++.=|--..+.|=.-+|++.-+- .+.
T Consensus 569 W~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLae 648 (885)
T KOG2023|consen 569 WELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAE 648 (885)
T ss_pred HHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHH
Confidence 111 1223444444444445555555555555421 111
Q ss_pred CCCcchHHHHHHHHhhhhH-HHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHH
Q 000655 1181 GVGSQREAFLEQIHAMLPR-LILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFV 1259 (1370)
Q Consensus 1181 ~~~~~~~~~~eQv~~~Lvp-LLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~ 1259 (1370)
|-|...+++.-| +++.- ++..++|+-|+||+.|=.-|+..+.. -|. | .. - +..++...|.
T Consensus 649 gLg~~ie~Lva~--snl~~lll~C~~D~~peVRQS~FALLGDltk~-------c~~-~-v~----p----~~~~fl~~lg 709 (885)
T KOG2023|consen 649 GLGSHIEPLVAQ--SNLLDLLLQCLQDEVPEVRQSAFALLGDLTKA-------CFE-H-VI----P----NLADFLPILG 709 (885)
T ss_pred HhhhchHHHhhh--ccHHHHHHHHhccCChHHHHHHHHHHHHHHHH-------HHH-h-cc----c----hHHHHHHHHh
Confidence 111222222222 22333 45678999999999884333332221 111 1 00 0 1122223333
Q ss_pred HhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHh-ccCCChhhHHHHHHHHHH
Q 000655 1260 QHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKL-SQSADAIVRATCSSSLGW 1338 (1370)
Q Consensus 1260 ~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~L-l~Dpdp~VR~~Aa~aL~~ 1338 (1370)
.-+....-.+--||.|-||-+.-.+..+.. .++.-++..|...+ .+--...|-...|.|+|+
T Consensus 710 ---------------~Nl~~~~isv~nNA~WAiGeia~k~g~~~~--~~v~~vl~~L~~iin~~~~~~tllENtAITIGr 772 (885)
T KOG2023|consen 710 ---------------ANLNPENISVCNNAIWAIGEIALKMGLKMK--QYVSPVLEDLITIINRQNTPKTLLENTAITIGR 772 (885)
T ss_pred ---------------hcCChhhchHHHHHHHHHHHHHHHhchhhh--hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhh
Confidence 234445556778899999988655553322 23344555555511 234556788899999999
Q ss_pred HHHHccccc
Q 000655 1339 LLKSINSHS 1347 (1370)
Q Consensus 1339 l~k~~~~~~ 1347 (1370)
++-.+-..+
T Consensus 773 Lg~~~Pe~v 781 (885)
T KOG2023|consen 773 LGYICPEEV 781 (885)
T ss_pred hhccCHHhc
Confidence 997665544
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.7e-07 Score=119.59 Aligned_cols=523 Identities=16% Similarity=0.170 Sum_probs=327.1
Q ss_pred HHHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHH
Q 000655 750 SSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGA 829 (1370)
Q Consensus 750 ~~i~~~L~~~el~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i~~~~~r~~~l~a 829 (1370)
..+++.+-+++-.+++.-++++..+++.+-...|-.+|..+.+..|..+..= .+++....-+-|..-..+ +|....+|
T Consensus 105 Aeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~-~~~l~~lf~q~~~d~s~~-vr~~a~rA 182 (1075)
T KOG2171|consen 105 AEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH-LDDLLRLFSQTMTDPSSP-VRVAAVRA 182 (1075)
T ss_pred HHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh-HHHHHHHHHHhccCCcch-HHHHHHHH
Confidence 3355555555888999999999999999999999999999999999998433 667777777777777777 99999999
Q ss_pred HHHHhhccC-chhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCC
Q 000655 830 ISCLAENTN-SKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDY 908 (1370)
Q Consensus 830 i~~La~~h~-~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~ 908 (1370)
+...+..+. ++.. |+. .+.++..++..++..-...++
T Consensus 183 ~~a~~~~~~~~~~~-----------------------------~~~-------~~~llP~~l~vl~~~i~~~d~------ 220 (1075)
T KOG2171|consen 183 LGAFAEYLENNKSE-----------------------------VDK-------FRDLLPSLLNVLQEVIQDGDD------ 220 (1075)
T ss_pred HHHHHHHhccchHH-----------------------------HHH-------HHHHhHHHHHHhHhhhhccch------
Confidence 998887774 2211 221 233344444444333222111
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHH-HHHHHHHHHHHh
Q 000655 909 SSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLR-AILTSFQAFCEC 987 (1370)
Q Consensus 909 ~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~-~aleAlk~ll~~ 987 (1370)
.....+..+|-|++.... +-...++-+++ .+.+++....++. ++.| .|++-+-.+.+.
T Consensus 221 -----------~~a~~~l~~l~El~e~~p----k~l~~~l~~ii-~~~l~Ia~n~~l~-----~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 221 -----------DAAKSALEALIELLESEP----KLLRPHLSQII-QFSLEIAKNKELE-----NSIRHLALEFLVSLSEY 279 (1075)
T ss_pred -----------HHHHHHHHHHHHHHhhch----HHHHHHHHHHH-HHHHHHhhccccc-----HHHHHHHHHHHHHHHHh
Confidence 112345666666666441 22223333321 2223332222221 1233 344433333322
Q ss_pred ----------hcchHHHHH------HHhcCCCC---------ChhhHHHHHHHHHhHhhhcCch-hHHHHHHHHhhhhcc
Q 000655 988 ----------VGDLEMRKI------LARDGEQN---------DKEKWINLIGDVAGCVSIKRPK-EVQTICLILTKSINR 1041 (1370)
Q Consensus 988 ----------~g~~~~~~~------L~~~g~W~---------~~e~~~~gV~lLAr~m~~~~~~-~~~~i~~~L~~~L~s 1041 (1370)
-|..=+... ++.+..|. ....+.-|++.|.|.-++-.|. .++.++.++-.+++|
T Consensus 280 Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S 359 (1075)
T KOG2171|consen 280 APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQS 359 (1075)
T ss_pred hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcC
Confidence 111111111 11234675 2346778888888854443433 588999999999999
Q ss_pred cccCcchHHHHHHHHhhhcCCc-hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hh-hhhHHHHHHHHHhh
Q 000655 1042 QQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HI-HQYATQVLSVILAL 1116 (1370)
Q Consensus 1042 ~~~~~Ri~a~af~sELl~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v-~~~~~~lL~all~~ 1116 (1370)
++-.+|-+|.-.++-..--|.. -..-+++++....++++||+|.||..|+-++|+++.+ .+ ++|-..++++++..
T Consensus 360 ~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ 439 (1075)
T KOG2171|consen 360 TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIAL 439 (1075)
T ss_pred CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHH
Confidence 9999999998888876554422 2234678999999999999999999999999999864 34 44556777799999
Q ss_pred cccCCh-hHHHHHHHHHHHHhccCCcCCcchhHHhHHh-hhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 000655 1117 LDDLDE-SVQLTAVSCLLTILKSSSKDAVEPILLNLSV-RLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH 1194 (1370)
Q Consensus 1117 L~d~d~-~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~-~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~ 1194 (1370)
+++... +|..-|..+|-+.....++..+++++-.+-. ++.-+-++..+.||..+....|.++-.+. +.|..-.
T Consensus 440 ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~----~~F~pY~- 514 (1075)
T KOG2171|consen 440 LDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ----EKFIPYF- 514 (1075)
T ss_pred hcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----hhhHhHH-
Confidence 998764 7999999999999999999999999999988 77788889999999999999999987433 2333332
Q ss_pred hhhhHHHHh-ccC----CChhHHHHHHHHHHhhchhhhh-hhh----hhhccc------cCCc-CCCCCh-HHHHHHHHH
Q 000655 1195 AMLPRLILH-IYD----DDLSVRQACRNTLKQVAPFMEI-GVY----GIFNSH------CFNS-DHRSDY-ETFVRDLTR 1256 (1370)
Q Consensus 1195 ~~LvpLLlH-L~D----~~~~V~~ack~tL~~~a~lL~w-~l~----~lf~~~------~~~~-~~~l~~-~~f~~~i~k 1256 (1370)
..+.|+|.| |+- +...+|-++-.++.-+|.-.|- +.. ++.+.. ...+ +...+| -.|+..+|+
T Consensus 515 d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ 594 (1075)
T KOG2171|consen 515 DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCR 594 (1075)
T ss_pred HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHH
Confidence 334444443 332 3334555555555555544442 111 111110 1111 122233 467788999
Q ss_pred HHHHhCcchHHHHHHHHHHhh-------------------cCCCh-----------------hHHHHHHHHHhhhhccCc
Q 000655 1257 QFVQHFPSRIDSYMGSTIQAF-------------------EAPWP-----------------IIQANAIYFSSSILCLCD 1300 (1370)
Q Consensus 1257 ~L~~~~~~~~~~~l~~~l~y~-------------------kS~~~-----------------~IR~aA~~fiG~l~~~~~ 1300 (1370)
.|..+|-......+--.+.-- ...|. .=|..|+-.+|.+...+.
T Consensus 595 ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk 674 (1075)
T KOG2171|consen 595 ILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELK 674 (1075)
T ss_pred HhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhh
Confidence 988877554443322211100 01111 113445555555544443
Q ss_pred hhhhhhccHHHHHH-HHHHHhccCCChhhHHHHHHHHHHHHHHccc
Q 000655 1301 DQHILSLFYTQVFG-LLVVKLSQSADAIVRATCSSSLGWLLKSINS 1345 (1370)
Q Consensus 1301 ~~~~~~~~~e~l~~-~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1345 (1370)
... ..++++++. .+-. |+-...-.||..|++++..+.+.-.-
T Consensus 675 ~~F--~pYve~v~~l~v~~-l~f~fhdgVR~aa~~~~p~ll~~~~~ 717 (1075)
T KOG2171|consen 675 EAF--APYVEQVVELMVPL-LKFYFHDGVRKAAAESMPQLLTCALK 717 (1075)
T ss_pred hhh--hhHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 222 235677777 4444 67789999999999999998855443
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=9.1e-06 Score=104.31 Aligned_cols=775 Identities=16% Similarity=0.166 Sum_probs=425.1
Q ss_pred HHHHHHHhcCCCCccchh-------hHHHHHHHHhhhcHHHHHHHHHHHHhhhccccchhhhhhcccccccchhHHHHHH
Q 000655 342 KIDWMYKQANIAIPTNRL-------GLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEESDDIHAA 414 (1370)
Q Consensus 342 ~L~~ll~~~~~~~~~ere-------G~A~~~G~~A~~Hld~vL~~L~~~~~~~~~~~~~~~l~~~k~~~~~~e~~~~ks~ 414 (1370)
-|+.++..++-.++..|| ++...+|-.=+.|+|+.+..+..=. .|.. ..+|.+
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~---------------~d~s-----~~vr~~ 178 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTM---------------TDPS-----SPVRVA 178 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhc---------------cCCc-----chHHHH
Confidence 355555555555565664 4566677777888888887773321 1221 138889
Q ss_pred HHHHHHHHHhcCC-chhHHHHHHHhhhhhhH---hhhhcccChhHHHHHHHHHHHHHHHHHhhhhcCCCcCCCCHHHHHH
Q 000655 415 LALMYGYAAKYAP-STVIEARIDALVGTNML---SRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLD 490 (1370)
Q Consensus 415 l~l~YG~va~~ap-~~~il~~ve~~I~~~i~---~~~~~~kd~~lK~s~l~sv~~i~~av~~~~~~~~~f~f~~k~eLl~ 490 (1370)
-...+|.++.+-+ ......++- ..++.++ +.+....|...=...+.++..+.....+ +.=.+-.++++
T Consensus 179 a~rA~~a~~~~~~~~~~~~~~~~-~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-------~l~~~l~~ii~ 250 (1075)
T KOG2171|consen 179 AVRALGAFAEYLENNKSEVDKFR-DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-------LLRPHLSQIIQ 250 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHH-HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-------HHHHHHHHHHH
Confidence 9999999998885 122223332 2222222 2222233433223445555555444222 22234568889
Q ss_pred HHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhhhcccCCCCChhHHHHHHHHhh-hccccCCC---C----------cc
Q 000655 491 YILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATL-GFFALPND---P----------ID 556 (1370)
Q Consensus 491 ~l~~li~~ep~~~l~s~~~~l~~vr~~am~ait~L~~L~P~l~~e~~~~ll~~c~-~v~~lp~~---~----------~~ 556 (1370)
.++.+.+.... ..+ +|+.|+..++.+++--|...-.... +....+ -++.++.+ + .+
T Consensus 251 ~~l~Ia~n~~l---~~~------~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~~lv~~~l~~mte~~~D~ew~~~d~~ded 320 (1075)
T KOG2171|consen 251 FSLEIAKNKEL---ENS------IRHLALEFLVSLSEYAPAMCKKLAL-LGHTLVPVLLAMMTEEEDDDEWSNEDDLDED 320 (1075)
T ss_pred HHHHHhhcccc---cHH------HHHHHHHHHHHHHHhhHHHhhhchh-hhccHHHHHHHhcCCcccchhhccccccccc
Confidence 99998876544 356 9999999999999774433222222 333333 33333322 1 11
Q ss_pred ----cHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhcChhHHHhhHHHHHHHHHHHHHHhhhhcccccCC
Q 000655 557 ----VVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALG 632 (1370)
Q Consensus 557 ----l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~iL~~l~pwl~S~~~heR~RA~~~~~~lL~~~~~~~~~~~c~~~ 632 (1370)
-+.-..++++.+=..+=-+ .-+--+++++...++|..-.+|.-|+.++..+-. |
T Consensus 321 ~~~~~~~~A~~~lDrlA~~L~g~---------~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E-------------G 378 (1075)
T KOG2171|consen 321 DEETPYRAAEQALDRLALHLGGK---------QVLPPLFEALEAMLQSTEWKERHAALLALSVIAE-------------G 378 (1075)
T ss_pred cccCcHHHHHHHHHHHHhcCChh---------hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-------------c
Confidence 2344456666443332211 2245677889999999999999999988765433 1
Q ss_pred CCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 000655 633 CHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSS 712 (1370)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~ 712 (1370)
||- .|. ..+-+++-+..+.-.||++.||..|..||..+ +- ....
T Consensus 379 c~~----------~m~-----------------~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~---st------dl~p 422 (1075)
T KOG2171|consen 379 CSD----------VMI-----------------GNLPKILPIVLNGLNDPHPRVRYAALNAIGQM---ST------DLQP 422 (1075)
T ss_pred cHH----------HHH-----------------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh---hh------hhcH
Confidence 111 111 25667888999999999999999999999754 11 1110
Q ss_pred CcchhhhhhhhhhcH-HHHHHhccCCCCChhHHHHHHHHH---HHccCChhHHHHHHHHHHH----hccCCChhh-HHHH
Q 000655 713 GIDLELSYGALSSLE-DVIAILRSDASIDPSEVFNRIVSS---VCILLTKDELVATLHSCTT----AICDRTKQS-AEGA 783 (1370)
Q Consensus 713 ~~~~~~~~~~l~~l~-d~~~~l~~~~~~~~~~~~~~i~~~---i~~~L~~~el~~~l~~ll~----~L~d~~~~~-~~~A 783 (1370)
..+. ..-+.+. -.+..+++ +.-..+..+-+.. |....+.+++..++-.+++ .|.++.... ...|
T Consensus 423 --~iqk--~~~e~l~~aL~~~ld~---~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~v 495 (1075)
T KOG2171|consen 423 --EIQK--KHHERLPPALIALLDS---TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQA 495 (1075)
T ss_pred --HHHH--HHHHhccHHHHHHhcc---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 0010 0000011 11122222 2223444444333 4567778888777766666 344444443 3555
Q ss_pred HHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHH---HHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhc
Q 000655 784 IQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHL---RLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDIS 860 (1370)
Q Consensus 784 ~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i~~~~~---r~~~l~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~ 860 (1370)
...+-.+=..-+.++ ..-..+++-.+..-|.....+.- |-.++..+++.+
T Consensus 496 vtaIasvA~AA~~~F-~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~-------------------------- 548 (1075)
T KOG2171|consen 496 VTAIASVADAAQEKF-IPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA-------------------------- 548 (1075)
T ss_pred HHHHHHHHHHHhhhh-HhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH--------------------------
Confidence 556666666666666 33466777777666666553332 222333333332
Q ss_pred cccCCCCchhHHHHhhcC--cccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCc
Q 000655 861 RLRGGWPMQDAFHAFSQH--AVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGK 938 (1370)
Q Consensus 861 ~L~~~lP~d~~W~ala~d--~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~ 938 (1370)
+|+|.+ .+++..+++.++..- ..- .+++ ++.. --..++..-+++++-.
T Consensus 549 ------------~AVGke~F~~~a~eliqll~~~~-~~~--~~~d-----------d~~~-sy~~~~warmc~ilg~--- 598 (1075)
T KOG2171|consen 549 ------------RAVGKEKFLPLAEELIQLLLELQ-GSD--QDDD-----------DPLR-SYMIAFWARMCRILGD--- 598 (1075)
T ss_pred ------------HHhhhhhhhHhHHHHHHHHHhhc-ccc--hhhc-----------cccH-HHHHHHHHHHHHHhch---
Confidence 333332 356777777777642 111 1110 0111 1134555566665442
Q ss_pred chHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHhcC---------CCCChhhH
Q 000655 939 VGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDG---------EQNDKEKW 1009 (1370)
Q Consensus 939 ~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g---------~W~~~e~~ 1009 (1370)
.+. ++.|.++-.|+.....-=+.... ++. ..+ ...+.+.+ ...+.+| +-++.++-
T Consensus 599 ~F~----p~L~~Vmppl~~ta~~~p~~~~~---d~~--d~e------~~~~~~~~-e~~~~~~~e~~~I~Tsvl~eK~~A 662 (1075)
T KOG2171|consen 599 DFA----PFLPVVMPPLLKTARLDPDVALS---DEE--DEE------EEQDLDGW-EVVELGDKENIGIRTSVLDEKETA 662 (1075)
T ss_pred hhH----hHHHHHhHHHHHhhccCCcccCc---Cch--hhh------hccccccc-hhhccCCceeeeeeehhHHHHHHH
Confidence 343 44444444444333221111100 000 000 00111111 1111111 11256677
Q ss_pred HHHHHHHHhHhhhcCchhHHHHHHHHhhhhcc-cccCcchHHHHHHHHhhhcC-----Cc---hhhHHHHHHHHHHhhcC
Q 000655 1010 INLIGDVAGCVSIKRPKEVQTICLILTKSINR-QQRFQREAAAAALSEFVRYS-----GG---FDSLLEQMVEALCRHVS 1080 (1370)
Q Consensus 1010 ~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s-~~~~~Ri~a~af~sELl~~~-----~~---~~~l~~~~i~~L~~~l~ 1080 (1370)
.+.+...|.-+....-|++..++...+|.++- -++..|.+|+-.+-.++++- .. ...+.+.+...+...+.
T Consensus 663 ~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~ 742 (1075)
T KOG2171|consen 663 CEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALE 742 (1075)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhh
Confidence 77788888888888888999999977777765 55788988887777777641 11 12334556777777775
Q ss_pred C-CChhHHHHHhhhccCCc---------chhhhhhHHHHHHHHHh-------hcccC----ChhHHHHHHH---------
Q 000655 1081 D-ESPTVRGLCLRGLVQIP---------SIHIHQYATQVLSVILA-------LLDDL----DESVQLTAVS--------- 1130 (1370)
Q Consensus 1081 D-~~~~VR~lsLrGLgnl~---------~~~v~~~~~~lL~all~-------~L~d~----d~~V~leAm~--------- 1130 (1370)
+ |++.|-.-.+.++|+.- .+++......++..++. ...+. ++...-|.|.
T Consensus 743 ~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~ 822 (1075)
T KOG2171|consen 743 EEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDA 822 (1075)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHH
Confidence 5 68888888888887542 11211111111111111 11110 1112222222
Q ss_pred ---HHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCC
Q 000655 1131 ---CLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD 1207 (1370)
Q Consensus 1131 ---~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~ 1207 (1370)
++..+... .++.+-+++-++...+-.++.+.+.--|..|...||+++.+++.. ...+.+ ..+++++.-++|+
T Consensus 823 i~~i~~~l~k~-~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a-~~~~~~---~~~p~~~~~~~d~ 897 (1075)
T KOG2171|consen 823 ISDILAALAKA-LKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEA-SAKYKE---RFLPLVLEALQDS 897 (1075)
T ss_pred HHHHHHHHHHH-ccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccc-cchHHH---HHHHHHHHHcCCC
Confidence 22333322 345667788888888888888888777999999999999976543 223322 4677888899999
Q ss_pred ChhHHHHHHHHHHhhchhhhhh-----------hhhhhccccCC-cCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 000655 1208 DLSVRQACRNTLKQVAPFMEIG-----------VYGIFNSHCFN-SDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ 1275 (1370)
Q Consensus 1208 ~~~V~~ack~tL~~~a~lL~w~-----------l~~lf~~~~~~-~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~ 1275 (1370)
+|+||+++.+.++-||.+-+-. +..+++..... +.....++.....++|.+. ++|..+. +.|.+.
T Consensus 898 ~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~-~~~~~i~--vdqvl~ 974 (1075)
T KOG2171|consen 898 DPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILL-FNPNRIP--VDQVLP 974 (1075)
T ss_pred CHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHH-hCCccCc--HHHHHH
Confidence 9999999999999999764432 33444433222 2334556777777777555 4555555 666666
Q ss_pred --hhcCCChhHHHHHHHHHhhhhccCc
Q 000655 1276 --AFEAPWPIIQANAIYFSSSILCLCD 1300 (1370)
Q Consensus 1276 --y~kS~~~~IR~aA~~fiG~l~~~~~ 1300 (1370)
+...|-..=+..|+...+++...+.
T Consensus 975 ~~l~~LPl~~D~eEa~~iy~~l~~L~e 1001 (1075)
T KOG2171|consen 975 AWLSWLPLKEDKEEAVPIYTFLSDLYE 1001 (1075)
T ss_pred HHHHhCCCccchhhhhhHHHHHHHHHH
Confidence 3345555556666666666655444
No 5
>PRK09687 putative lyase; Provisional
Probab=99.06 E-value=6.9e-09 Score=119.46 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=157.6
Q ss_pred HHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhh-cCCCChhHHHHHhhhccCCcchhhhhhHH
Q 000655 1029 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRH-VSDESPTVRGLCLRGLVQIPSIHIHQYAT 1107 (1370)
Q Consensus 1029 ~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~-l~D~~~~VR~lsLrGLgnl~~~~v~~~~~ 1107 (1370)
+.++..+.+.+++++...|..|+..++++-..... .+..+..|... ++|+++.||..++.+||++..... ...+
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-~~~~ 127 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP-LYSP 127 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-ccch
Confidence 45566667778899999999999999997543211 23455566655 799999999999999999865322 1235
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchH
Q 000655 1108 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQRE 1187 (1370)
Q Consensus 1108 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~ 1187 (1370)
.+++.+...+.|.+..|+..|+.+|+++-. ...-+ .|.++.+|+++.||..|+..+|.+.. +..
T Consensus 128 ~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----~~ai~-------~L~~~L~d~~~~VR~~A~~aLg~~~~---~~~-- 191 (280)
T PRK09687 128 KIVEQSQITAFDKSTNVRFAVAFALSVIND----EAAIP-------LLINLLKDPNGDVRNWAAFALNSNKY---DNP-- 191 (280)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHhccCC----HHHHH-------HHHHHhcCCCHHHHHHHHHHHhcCCC---CCH--
Confidence 667778888888888999999999987642 22112 23456789999999999999999821 111
Q ss_pred HHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHH
Q 000655 1188 AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRID 1267 (1370)
Q Consensus 1188 ~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~ 1267 (1370)
....+|+-.|+|+++.|++.+..+|++++. +..+..+
T Consensus 192 -------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------------------~~av~~L------------- 228 (280)
T PRK09687 192 -------DIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------------------KRVLSVL------------- 228 (280)
T ss_pred -------HHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------------------hhHHHHH-------------
Confidence 244556666699999999999999988543 1122222
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 000655 1268 SYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1338 (1370)
Q Consensus 1268 ~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1338 (1370)
+.+++++. +|..|+.-+|.+ +.+..+.+|+.++.++||+.|+.+|-+||..
T Consensus 229 ------i~~L~~~~--~~~~a~~ALg~i------------g~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 229 ------IKELKKGT--VGDLIIEAAGEL------------GDKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ------HHHHcCCc--hHHHHHHHHHhc------------CCHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 22444444 455566656633 3456788899833359999999999999753
No 6
>PRK09687 putative lyase; Provisional
Probab=99.02 E-value=1.8e-08 Score=116.02 Aligned_cols=224 Identities=15% Similarity=0.050 Sum_probs=121.4
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCc-CCcchhHHh
Q 000655 1072 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK-DAVEPILLN 1150 (1370)
Q Consensus 1072 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~-~~~~~~l~~ 1150 (1370)
++.|...+.|++..||..+++.|+.++. +.+++.+...+.+.|..++..|..+|+.+...-.. ...-+.+..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~ 97 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNN 97 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHH
Confidence 4456666677777777777777777764 34455555656666677777777777776532100 011122222
Q ss_pred HHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-h
Q 000655 1151 LSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-G 1229 (1370)
Q Consensus 1151 i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~ 1229 (1370)
+ +.+|+.+.||.+|+..+|++........ ...+-.|..++.|+++.|+.++..+|+.++.--.. .
T Consensus 98 l------~~~D~d~~VR~~A~~aLG~~~~~~~~~~--------~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~ 163 (280)
T PRK09687 98 L------ALEDKSACVRASAINATGHRCKKNPLYS--------PKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPL 163 (280)
T ss_pred H------HhcCCCHHHHHHHHHHHhcccccccccc--------hHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHH
Confidence 1 3566677777777777777643111000 01223355666777777777777777665432111 2
Q ss_pred hhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccH
Q 000655 1230 VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFY 1309 (1370)
Q Consensus 1230 l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~ 1309 (1370)
+..++. +.. + +.-......|.+. +..-..-....+.-++++.+.||.+|++.+|.+ +.
T Consensus 164 L~~~L~-----d~~---~-~VR~~A~~aLg~~-~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~------------~~ 221 (280)
T PRK09687 164 LINLLK-----DPN---G-DVRNWAAFALNSN-KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR------------KD 221 (280)
T ss_pred HHHHhc-----CCC---H-HHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc------------CC
Confidence 222221 110 1 1111112222221 111111122223345788888888888888843 22
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 000655 1310 TQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1341 (1370)
Q Consensus 1310 e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1341 (1370)
+.++..|.. .++|++ ||..|++|||.++.
T Consensus 222 ~~av~~Li~-~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 222 KRVLSVLIK-ELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred hhHHHHHHH-HHcCCc--hHHHHHHHHHhcCC
Confidence 566777777 677766 77888888888773
No 7
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=5.2e-08 Score=114.45 Aligned_cols=490 Identities=26% Similarity=0.216 Sum_probs=286.3
Q ss_pred hcccChhHHHHHHHHHHHHHHHHHhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhhhcc
Q 000655 448 LHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVT 527 (1370)
Q Consensus 448 ~~~kd~~lK~s~l~sv~~i~~av~~~~~~~~~f~f~~k~eLl~~l~~li~~ep~~~l~s~~~~l~~vr~~am~ait~L~~ 527 (1370)
++....+.|++-+.+....+.++....+.+.-|+.+++++.++++...|..|- .+-+..+-......+..++++++-
T Consensus 21 ~h~~h~~a~~~~~~s~~l~~~s~i~a~~~~~~~pl~~rdq~l~~i~~~mg~~~---~a~sl~~v~~~~a~~~~~~~t~vl 97 (533)
T KOG2032|consen 21 LHVRHQTAKQAVITAIDLLGRSVINAAETGATFPLKRRDQMLDYILTLMGREG---FAESLLEVLHTQALALNACTTLVL 97 (533)
T ss_pred HHHHHHHHHHHHHHcccccchHHHHHHHhhcCCchhhHHHHHHHHHHhhchhh---hhhhhcchhhhHHHHHHHHHHHHH
Confidence 35567788999999999999999988777778899999999999999998753 222223444567788999999999
Q ss_pred cCCCCChhHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhcChhHHHhh
Q 000655 528 VEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRR 607 (1370)
Q Consensus 528 L~P~l~~e~~~~ll~~c~~v~~lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~iL~~l~pwl~S~~~heR~ 607 (1370)
.+|.+..+++..++. +|.+++.-+- +.....|.....++-++
T Consensus 98 ~e~~lti~~g~~v~~--------------lypqlf~llL------------------------llvscvlg~k~p~~lqa 139 (533)
T KOG2032|consen 98 VEPKLTIETGNRVMK--------------LYPQLFSLLL------------------------LLVSCVLGLKSPDSLQA 139 (533)
T ss_pred HHHhhhhhcCchHHH--------------hhHHHHHHHH------------------------HHHHHHhhccCcccHHH
Confidence 999999888888773 3444333222 11222333222222222
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHH-HhhccccCCChhH
Q 000655 608 RSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVI-MYLPRCADTDSEV 686 (1370)
Q Consensus 608 RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg-~l~prC~D~~~~i 686 (1370)
+-...+...++ +..-++-.+| . .+..|+|.+.| ..+--|+|-++.+
T Consensus 140 ~~r~~~~~al~-~~~~~pc~~~---------------------t-----------atl~cl~lqsa~e~~~~~sde~~~~ 186 (533)
T KOG2032|consen 140 LSRLEDVIALL-KSLVAPCHSC---------------------T-----------ATLCCLILQSAEEAIQAVSDEVSRR 186 (533)
T ss_pred HHHHHhHHHHH-HhhhhHHHHh---------------------H-----------HHHHHHHHHHhHHHHHHhhhcccch
Confidence 22223333333 1111111111 1 12358999888 8899999999998
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCCCCChhHHHH---HHHHHHHccCCh--hHH
Q 000655 687 RKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN---RIVSSVCILLTK--DEL 761 (1370)
Q Consensus 687 R~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~d~~~~l~~~~~~~~~~~~~---~i~~~i~~~L~~--~el 761 (1370)
-.++.+...+...++- +++.-+...+.+. ..- ++.+ +.++++..++.... .+++...+..-+ .-+
T Consensus 187 w~qls~~~~h~~g~tr-lqr~m~~~~~~~~---~~i---l~q~---~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL 256 (533)
T KOG2032|consen 187 WSQLSDNDIHRVGLTR-LQRFMACVQDLEM---GKI---LAQL---LSSITSEKENGRITDIAFFAELKRPKELDKTGLL 256 (533)
T ss_pred hhhcccCcccHHHHHH-HHHHHHhhCCccH---HHH---Hhhc---ccccchhcccchHHHHHHHHHHhCcccccccccH
Confidence 8888777777777753 3331111111010 001 1111 01111111121111 344444444433 567
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchh
Q 000655 762 VATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKI 841 (1370)
Q Consensus 762 ~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i~~~~~r~~~l~ai~~La~~h~~~v 841 (1370)
.+++..+.+...||+.....-|+..|......-..+. .+.++.++++|+..|...... ..++++|.+|+.--...+
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv-~th~~~~ldaii~gL~D~~~~---~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV-RTHKTTQLDAIIRGLYDDLNE---EVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-HHhHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHhhh
Confidence 7899999999999999888888887777776644455 356889999999999888774 456677777765543333
Q ss_pred HHHHHHhhhcccchhhhhccccCCCCchh----HHHHhhcCcccHHHHHHHHHHHHccCCCccCCCc-----cCCCCCCC
Q 000655 842 VFNEVLATAGKDIVTKDISRLRGGWPMQD----AFHAFSQHAVLSFLFLEHLISALNQTPFVKGDME-----KGDYSSHS 912 (1370)
Q Consensus 842 V~~~Ll~~~~~~~~~~~~~~L~~~lP~d~----~W~ala~d~~l~~~vL~~LL~~L~~~p~~~e~~~-----~~~~~~~~ 912 (1370)
.++ + -++++|++. +|..-..+-..+.-+|-.-|.++.+++..+...| ...+..|-
T Consensus 333 ~~~-l---------------~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl 396 (533)
T KOG2032|consen 333 NDD-L---------------ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL 396 (533)
T ss_pred hcc-h---------------hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee
Confidence 322 2 267788875 8999888889999999999999988887655321 12222332
Q ss_pred CCCCccchHH--HHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcc
Q 000655 913 ADTWIDDDIL--QAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGD 990 (1370)
Q Consensus 913 ~~~~~~~~~~--laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~ 990 (1370)
. +..| .+|-.+..-+.+-+ -+++++..+|++ .-+
T Consensus 397 ~-----d~~p~va~ACr~~~~~c~p~--l~rke~~~~~q~-------------------------------------~ld 432 (533)
T KOG2032|consen 397 Q-----DPNPYVARACRSELRTCYPN--LVRKELYHLFQE-------------------------------------SLD 432 (533)
T ss_pred C-----CCChHHHHHHHHHHHhcCch--hHHHHHHHHHhh-------------------------------------hhH
Confidence 2 1222 22222222222222 223333333222 110
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCc---hhhH
Q 000655 991 LEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG---FDSL 1067 (1370)
Q Consensus 991 ~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~---~~~l 1067 (1370)
..+ .... +.|..-+- -+.++++...--......-++++..+.+|.+++.+-..+..+... ...-
T Consensus 433 ~~~-~~~q--------~Fyn~~c~----~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d 499 (533)
T KOG2032|consen 433 TDM-ARFQ--------AFYNQWCI----QLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSAD 499 (533)
T ss_pred HhH-HHHH--------HHHHHHHH----HHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 000 0000 11111111 112233333333334445677888889999888766655544221 1111
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHhhhccCCc
Q 000655 1068 LEQMVEALCRHVSDESPTVRGLCLRGLVQIP 1098 (1370)
Q Consensus 1068 ~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~ 1098 (1370)
.+.+...|..-..||.|.|+..+..+++-+.
T Consensus 500 ~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 500 GLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 3557788888899999999999999987553
No 8
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.93 E-value=2.8e-08 Score=131.95 Aligned_cols=243 Identities=14% Similarity=0.052 Sum_probs=152.4
Q ss_pred HHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHH
Q 000655 1031 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVL 1110 (1370)
Q Consensus 1031 i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL 1110 (1370)
.+..|...|++++...|..|+..+.++- .+..+..|.+.++|+++.||..++.+|+.+..... ..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~---------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------~~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT---------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------PA 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc---------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC------ch
Confidence 6677777777777777888877777642 25577777788888888888888887776642100 01
Q ss_pred HHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHH
Q 000655 1111 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFL 1190 (1370)
Q Consensus 1111 ~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~ 1190 (1370)
+++...|++.|..|+..|+..|+.+-. .... . +...++|+++.||.+|+..+|.+.. .
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~----~~~~-~-------l~~~L~D~d~~VR~~Av~aL~~~~~------~---- 744 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRA----GDAA-L-------FAAALGDPDHRVRIEAVRALVSVDD------V---- 744 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc----CCHH-H-------HHHHhcCCCHHHHHHHHHHHhcccC------c----
Confidence 345555666677788877777777531 1111 1 1225678888888888888777522 0
Q ss_pred HHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhC-cchHHHH
Q 000655 1191 EQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-PSRIDSY 1269 (1370)
Q Consensus 1191 eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~-~~~~~~~ 1269 (1370)
.+|+..+.|+++.|+.++..+|...+.--.-.+..+.. . ++|+. ...-......|.+.. +..+.
T Consensus 745 -------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~-l-l~D~d----~~VR~aA~~aLg~~g~~~~~~-- 809 (897)
T PRK13800 745 -------ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRA-L-TGDPD----PLVRAAALAALAELGCPPDDV-- 809 (897)
T ss_pred -------HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHH-H-hcCCC----HHHHHHHHHHHHhcCCcchhH--
Confidence 12455678899999988888888876421101122221 1 22221 223333344444433 22221
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 000655 1270 MGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1339 (1370)
Q Consensus 1270 l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1339 (1370)
...+..++++.+.||.+|+..+|.+. .+.....|.. +++||++.||..|+.||+.+
T Consensus 810 -~~l~~aL~d~d~~VR~~Aa~aL~~l~------------~~~a~~~L~~-~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 810 -AAATAALRASAWQVRQGAARALAGAA------------ADVAVPALVE-ALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred -HHHHHHhcCCChHHHHHHHHHHHhcc------------ccchHHHHHH-HhcCCCHHHHHHHHHHHhcc
Confidence 22445678888889999998887432 2345577888 78999999999999998885
No 9
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.88 E-value=7.4e-08 Score=127.97 Aligned_cols=242 Identities=20% Similarity=0.166 Sum_probs=170.0
Q ss_pred HHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHH
Q 000655 1029 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1108 (1370)
Q Consensus 1029 ~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~ 1108 (1370)
+..+..|...|++++...|..|+..+.++...... ...|.+.+.|+++.||..+++.|+.+.....
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~------ 716 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------APALRDHLGSPDPVVRAAALDVLRALRAGDA------ 716 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc--------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH------
Confidence 44666777888999999999999999987432111 1256667789999999999999998764321
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHH
Q 000655 1109 VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREA 1188 (1370)
Q Consensus 1109 lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~ 1188 (1370)
..++..|.|.|..|+.+|+.+|+++-. ... +..+++|+++.||.+|...+|.+.....
T Consensus 717 --~~l~~~L~D~d~~VR~~Av~aL~~~~~------~~~--------l~~~l~D~~~~VR~~aa~aL~~~~~~~~------ 774 (897)
T PRK13800 717 --ALFAAALGDPDHRVRIEAVRALVSVDD------VES--------VAGAATDENREVRIAVAKGLATLGAGGA------ 774 (897)
T ss_pred --HHHHHHhcCCCHHHHHHHHHHHhcccC------cHH--------HHHHhcCCCHHHHHHHHHHHHHhccccc------
Confidence 245667889999999999999998521 111 2357899999999999999999865211
Q ss_pred HHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchh--hhhhhhhhhccccCCcCCCCChHHHHHH-HHHHHHHhCcch
Q 000655 1189 FLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF--MEIGVYGIFNSHCFNSDHRSDYETFVRD-LTRQFVQHFPSR 1265 (1370)
Q Consensus 1189 ~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l--L~w~l~~lf~~~~~~~~~~l~~~~f~~~-i~k~L~~~~~~~ 1265 (1370)
..+..|+--++|+++.|+.++-.+|..++.- .--.+... +.++. ..++. ....|..--+.
T Consensus 775 ------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~a-----L~d~d-----~~VR~~Aa~aL~~l~~~- 837 (897)
T PRK13800 775 ------PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAA-----LRASA-----WQVRQGAARALAGAAAD- 837 (897)
T ss_pred ------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHH-----hcCCC-----hHHHHHHHHHHHhcccc-
Confidence 1134444557899999999999999998742 10112222 22221 12333 34444433222
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHH
Q 000655 1266 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1337 (1370)
Q Consensus 1266 ~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1337 (1370)
.-+...+..+++|.+.||.+|+.-+|.+ .. ......+|.. .++|+|+.||..|++||.
T Consensus 838 --~a~~~L~~~L~D~~~~VR~~A~~aL~~~--~~---------~~~a~~~L~~-al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 838 --VAVPALVEALTDPHLDVRKAAVLALTRW--PG---------DPAARDALTT-ALTDSDADVRAYARRALA 895 (897)
T ss_pred --chHHHHHHHhcCCCHHHHHHHHHHHhcc--CC---------CHHHHHHHHH-HHhCCCHHHHHHHHHHHh
Confidence 2335556688999999999999999974 11 1455677888 789999999999999986
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.73 E-value=0.0031 Score=79.62 Aligned_cols=963 Identities=16% Similarity=0.148 Sum_probs=474.1
Q ss_pred HHHHHHHhhhhhccCHHHHHHHHHHHHHHhhcccccccccccccceecccccccCcccccccccccccCCCChhHHHHHH
Q 000655 59 PLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAIC 138 (1370)
Q Consensus 59 ~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~~~i~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c 138 (1370)
+-+++.+-.+|.|.|-.|..--++.+.-++.+ -++.=+++++...+-. .- ...++.|.++
T Consensus 46 ~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK------vke~~le~~ve~L~~~---~~-----------s~keq~rdis 105 (1233)
T KOG1824|consen 46 RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK------VKEDQLETIVENLCSN---ML-----------SGKEQLRDIS 105 (1233)
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh------chHHHHHHHHHHHhhh---hc-----------cchhhhccHH
Confidence 34566666677888888888777776666533 2444467777655511 00 1234566666
Q ss_pred HhhhhHhhccchh---------hhHhhHHHHHhhhcCc-cCccchhhHHHHHHHHHHhhccCCCcccccccCCCCCCCHH
Q 000655 139 EKGLLLLTITIPE---------MQHILWPLLLKMIIPR-AYTSAAATVCRCISELCRHRSSSSNVMLSECKARDDIPNPE 208 (1370)
Q Consensus 139 ~~~L~lltttV~~---------m~~~LWP~LL~~i~p~-~yT~al~~ick~l~~La~k~~~~~~~~~~~~~~~~~lPsp~ 208 (1370)
.=+|+.+-.-++. .=.-+-|.|-.++.-. ++.++ -|-|+-.++.--+..| +...+|+ .
T Consensus 106 si~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai---~~e~lDil~d~lsr~g-~ll~~fh--------~ 173 (1233)
T KOG1824|consen 106 SIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAI---KCEVLDILADVLSRFG-TLLPNFH--------L 173 (1233)
T ss_pred HHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhh---HHHHHHHHHHHHHhhc-ccCcchH--------H
Confidence 6666665433331 1122334444444442 22222 2333333322211111 1122222 1
Q ss_pred HHHHHHHHHhcCCcc-cchhHHHHHHHHHhhCCCCCcchhhhHHhhHHHHHhhcccCCcCCCCcchHhhHHHHHHHHHHH
Q 000655 209 ELFARLVVLLHDPLA-REQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAE 287 (1370)
Q Consensus 209 ~llaRllvl~~~P~~-~~~rg~~~L~lL~~l~~~ih~~l~~~W~~~IP~L~~~L~~~~~~~~~~~~q~~We~~Ll~fL~~ 287 (1370)
.++.=++--+++|-. -..+..-.|..|-...+. .....-|..|+.-|.+.+.+ +--.++=..|-...+.
T Consensus 174 ~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~------~ly~~li~~Ll~~L~~~~q~----~~~rt~Iq~l~~i~r~ 243 (1233)
T KOG1824|consen 174 SILKCLLPQLQSPRLAVRKKAITALGHLASSCNR------DLYVELIEHLLKGLSNRTQM----SATRTYIQCLAAICRQ 243 (1233)
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHhccCCCCch----HHHHHHHHHHHHHHHH
Confidence 233222222333332 123555556555555553 36778888888888765421 1112333333333333
Q ss_pred hhhccccCcHHHHHHHH---HHhhhhcCC-CChhhHHHHHHHHHHHHHhcCChh--HHHHHHHHHHHh----cCCC----
Q 000655 288 SLDVVQETDWLISLGNA---FTEQYVLYT-PDDDHSALLHRCLGILLQKVADRN--YVCDKIDWMYKQ----ANIA---- 353 (1370)
Q Consensus 288 sl~~i~d~~W~~~L~~e---l~~q~~~y~-~~~~eK~fL~k~lG~~L~~~~~~~--~V~~~L~~ll~~----~~~~---- 353 (1370)
+ +..+..++..- +.+.-..-+ .+++-+-+..+.+|..|..|...- ++.+-+..+++- .||.
T Consensus 244 a-----g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~ 318 (1233)
T KOG1824|consen 244 A-----GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE 318 (1233)
T ss_pred h-----cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc
Confidence 2 22222222221 122111112 344556777888888888775321 122222222221 1221
Q ss_pred ---------------------Ccc-----chhhHHHHHHHHhhhcHHHHHHHHHHHHhhhccccchhhhhhcccccccch
Q 000655 354 ---------------------IPT-----NRLGLAKAMGLVAASHLDAVLEMLKGILDNIGQSLFQRLLSFFSNSYRMEE 407 (1370)
Q Consensus 354 ---------------------~~~-----ereG~A~~~G~~A~~Hld~vL~~L~~~~~~~~~~~~~~~l~~~k~~~~~~e 407 (1370)
++. -|..-|+|+--.-++|.+-+.+..+..+- ...+-||++-
T Consensus 319 eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p--------~lI~RfkERE---- 386 (1233)
T KOG1824|consen 319 EDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGP--------ALISRFKERE---- 386 (1233)
T ss_pred cchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCH--------HHHHHHHHHh----
Confidence 111 25677888888888888888777766654 2344566652
Q ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHH-HHhhhhhhHhhhhcccChhHHHHHHHHHHHHHHHHHhhhhcCCCcCCCCHH
Q 000655 408 SDDIHAALALMYGYAAKYAPSTVIEARI-DALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRD 486 (1370)
Q Consensus 408 ~~~~ks~l~l~YG~va~~ap~~~il~~v-e~~I~~~i~~~~~~~kd~~lK~s~l~sv~~i~~av~~~~~~~~~f~f~~k~ 486 (1370)
|.+|+-++-.|=..-.+.++-. .+. |++- | .+ ..-++-.-.+-+.+-.|.++|++
T Consensus 387 -EnVk~dvf~~yi~ll~qt~~~~--~~~~d~d~---~-e~---~g~~s~~~~L~~~~~~iVkai~~-------------- 442 (1233)
T KOG1824|consen 387 -ENVKADVFHAYIALLKQTRPVI--EVLADNDA---M-EQ---GGTPSDLSMLSDQVPLIVKAIQK-------------- 442 (1233)
T ss_pred -hhHHHHHHHHHHHHHHcCCCCc--ccccCchh---h-hc---cCCccchHHHHhhhHHHHHHHHH--------------
Confidence 3677777777766655554321 000 0000 0 00 00001112233334444444433
Q ss_pred HHHHHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhhhcccCCCCChhHHHHHHHHhhhccccCCCCcccHHHHHHHHH
Q 000655 487 QLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLI 566 (1370)
Q Consensus 487 eLl~~l~~li~~ep~~~l~s~~~~l~~vr~~am~ait~L~~L~P~l~~e~~~~ll~~c~~v~~lp~~~~~l~~~~~~aL~ 566 (1370)
.++ | ++ .+ +||.++..++.|+..-|-.-.+....++.... |.+|. .+..-+--+++|.
T Consensus 443 --------qlr-~--ks--~k------t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~--~~l~D-kSsss~~ki~~L~ 500 (1233)
T KOG1824|consen 443 --------QLR-E--KS--VK------TRQGCFLLLTELINVLPGALAQHIPSLVPGII--YSLND-KSSSSNLKIDALV 500 (1233)
T ss_pred --------HHh-h--cc--cc------chhhHHHHHHHHHHhCcchhhhcccccchhhh--hhcCC-ccchHHHHHHHHH
Confidence 232 1 12 22 78888999999888777665544444443222 23331 1345566788888
Q ss_pred HHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhcChhH----HHhhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhh
Q 000655 567 TLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVE----YQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQ 642 (1370)
Q Consensus 567 ~lL~~ll~~~~~d~~~~~~~L~~iL~~l~pwl~S~~~----heR~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~ 642 (1370)
-+-..+...+ |+.++.+++.|.|-+.-... .--..|+..+..+.++-+.
T Consensus 501 fl~~~L~s~~-------p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirp-------------------- 553 (1233)
T KOG1824|consen 501 FLYSALISHP-------PEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRP-------------------- 553 (1233)
T ss_pred HHHHHHhcCC-------hhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcc--------------------
Confidence 7766666654 57777777777655521111 1112233333333332221
Q ss_pred hhhhhhccCCCCCCcccCCchhhhhhhhHHHH--hhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhh
Q 000655 643 IDRAVLGNFSNLPSAYVLPSREALCLGNRVIM--YLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSY 720 (1370)
Q Consensus 643 ~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~--l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~ 720 (1370)
...|+.|..+| ..|.+..- =-..-.|.|.+||..|+.||..+..--. - .- . .+. .
T Consensus 554 ---------l~~~~~~d~~~----~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg--D----~l-~--~eL-~ 610 (1233)
T KOG1824|consen 554 ---------LQPPSSFDASP----YVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG--D----FL-G--NEL-P 610 (1233)
T ss_pred ---------cCCCccCCCCh----hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh--h----hh-h--hhh-H
Confidence 11222233222 33333222 1235689999999999999988754311 0 00 0 000 1
Q ss_pred hhhhhcHHHHHHhccCCCCCh-hHHHHHHHHHHHccCC-hhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccc
Q 000655 721 GALSSLEDVIAILRSDASIDP-SEVFNRIVSSVCILLT-KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNEL 798 (1370)
Q Consensus 721 ~~l~~l~d~~~~l~~~~~~~~-~~~~~~i~~~i~~~L~-~~el~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L 798 (1370)
.-|..+ .+++.++.+.-+ ..-+..|+-+- -.++ ...++..+..+..=++-.+.....+.-..++.+++..|..+
T Consensus 611 ~~L~il---~eRl~nEiTRl~AvkAlt~Ia~S~-l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~ 686 (1233)
T KOG1824|consen 611 RTLPIL---LERLGNEITRLTAVKALTLIAMSP-LDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSI 686 (1233)
T ss_pred HHHHHH---HHHHhchhHHHHHHHHHHHHHhcc-ceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 111111 122322110000 00011222210 1222 23344444444444444444455666778899999999888
Q ss_pred cccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHh---hccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHh
Q 000655 799 SETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLA---ENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAF 875 (1370)
Q Consensus 799 ~e~dV~~I~~~I~~~L~~i~~~~~r~~~l~ai~~La---~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~al 875 (1370)
=++..+.+..+++..-.++-.+.+..|+..|+ ...+..++
T Consensus 687 ----~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~--------------------------------- 729 (1233)
T KOG1824|consen 687 ----PAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLL--------------------------------- 729 (1233)
T ss_pred ----cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHH---------------------------------
Confidence 35677888888777666665555555554443 33333111
Q ss_pred hcCcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH-HHH
Q 000655 876 SQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPV-LAA 954 (1370)
Q Consensus 876 a~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~L-f~a 954 (1370)
....++|+.++..++..-. +..|..++-.+|. ..|...+|.+ +.-
T Consensus 730 ----~~~~~iL~~ii~ll~Spll-----------------------qg~al~~~l~~f~-------alV~t~~~~l~y~~ 775 (1233)
T KOG1824|consen 730 ----KISNPILDEIIRLLRSPLL-----------------------QGGALSALLLFFQ-------ALVITKEPDLDYIS 775 (1233)
T ss_pred ----HHhhhhHHHHHHHhhCccc-----------------------cchHHHHHHHHHH-------HHHhcCCCCccHHH
Confidence 2345667777765543321 1123333333222 3333333433 222
Q ss_pred HHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHhH---hhhcCchhHHHH
Q 000655 955 LTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGC---VSIKRPKEVQTI 1031 (1370)
Q Consensus 955 LL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~---m~~~~~~~~~~i 1031 (1370)
|+ .++.+.-++.+.. ..|-++-.-+|+| +....++.-+.+
T Consensus 776 l~--------------------------s~lt~PV~~~~~~-----------~l~kqa~~siA~cvA~Lt~~~~~~s~s~ 818 (1233)
T KOG1824|consen 776 LL--------------------------SLLTAPVYEQVTD-----------GLHKQAYYSIAKCVAALTCACPQKSKSL 818 (1233)
T ss_pred HH--------------------------HHHcCCccccccc-----------chhHHHHHHHHHHHHHHHHhccccchhH
Confidence 21 1122222222211 1222333334443 333445567778
Q ss_pred HHHHhhhhccc--ccCcchHHHHHHHHhhhcCCc--hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHH
Q 000655 1032 CLILTKSINRQ--QRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYAT 1107 (1370)
Q Consensus 1032 ~~~L~~~L~s~--~~~~Ri~a~af~sELl~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~ 1107 (1370)
...+..-++++ ++.-|+.|+..|.|+-+.-.. ...+ -....+.++.|+..|+..|-.+||+++.+....|.|
T Consensus 819 a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~----~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLp 894 (1233)
T KOG1824|consen 819 ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNEL----KDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLP 894 (1233)
T ss_pred HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhh----HHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHH
Confidence 88887777754 456677888888898775332 1222 236778889999999999999999999998888876
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchH
Q 000655 1108 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQRE 1187 (1370)
Q Consensus 1108 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~ 1187 (1370)
-++.-+-+ +..-..--+..|..++....-. ..+.++-..+|-|.+.+++.. +
T Consensus 895 fil~qi~s-----qpk~QyLLLhSlkevi~~~svd----------------------~~~~~v~~IW~lL~k~cE~~e-e 946 (1233)
T KOG1824|consen 895 FILEQIES-----QPKRQYLLLHSLKEVIVSASVD----------------------GLKPYVEKIWALLFKHCECAE-E 946 (1233)
T ss_pred HHHHHHhc-----chHhHHHHHHHHHHHHHHhccc----------------------hhhhhHHHHHHHHHHhcccch-h
Confidence 66654432 3333444455556655543322 244455555555555554432 2
Q ss_pred HHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHH
Q 000655 1188 AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRID 1267 (1370)
Q Consensus 1188 ~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~ 1267 (1370)
.-|.-|-.+|--|.+ .||+.-+ .+++...... . -+...-+-...|+.+...|..++
T Consensus 947 gtR~vvAECLGkL~l--~epesLl----------------pkL~~~~~S~-----a-~~~rs~vvsavKfsisd~p~~id 1002 (1233)
T KOG1824|consen 947 GTRNVVAECLGKLVL--IEPESLL----------------PKLKLLLRSE-----A-SNTRSSVVSAVKFSISDQPQPID 1002 (1233)
T ss_pred hhHHHHHHHhhhHHh--CChHHHH----------------HHHHHHhcCC-----C-cchhhhhhheeeeeecCCCCccC
Confidence 212222222222111 1111100 0222221111 0 11112222335666666677777
Q ss_pred HHHH----HHHHhhcCCChhHHHHHHHHHhhhhccCchhhh-------hhccHHH-HHHHHHHH-----h--ccCCChhh
Q 000655 1268 SYMG----STIQAFEAPWPIIQANAIYFSSSILCLCDDQHI-------LSLFYTQ-VFGLLVVK-----L--SQSADAIV 1328 (1370)
Q Consensus 1268 ~~l~----~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~-------~~~~~e~-l~~~L~~~-----L--l~Dpdp~V 1328 (1370)
.++. ..+..+++|...+|+.|...+...+++-|.--+ .-++.|. +-..|++- - .=|..-.+
T Consensus 1003 ~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~ 1082 (1233)
T KOG1824|consen 1003 PLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDL 1082 (1233)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHH
Confidence 6666 445578999999999998888877777763222 1111111 11122210 0 22777889
Q ss_pred HHHHHHHHHHHHHHcc
Q 000655 1329 RATCSSSLGWLLKSIN 1344 (1370)
Q Consensus 1329 R~~Aa~aL~~l~k~~~ 1344 (1370)
|..|=++++-|...|-
T Consensus 1083 RKaaFEcmytLLdscl 1098 (1233)
T KOG1824|consen 1083 RKAAFECMYTLLDSCL 1098 (1233)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999987764
No 11
>PTZ00429 beta-adaptin; Provisional
Probab=98.71 E-value=3.4e-06 Score=108.25 Aligned_cols=309 Identities=13% Similarity=0.120 Sum_probs=200.6
Q ss_pred hhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChh
Q 000655 1006 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPT 1085 (1370)
Q Consensus 1006 ~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~ 1085 (1370)
...-.+|+..+-..|..+. .+..++-.+++.+++.+-..|...-.++..+..... .+.--++|.|.+-++|+||.
T Consensus 46 ~~~kk~alKkvIa~mt~G~--DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p---elalLaINtl~KDl~d~Np~ 120 (746)
T PTZ00429 46 SYRKKAAVKRIIANMTMGR--DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQP---EKALLAVNTFLQDTTNSSPV 120 (746)
T ss_pred HHHHHHHHHHHHHHHHCCC--CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh---HHHHHHHHHHHHHcCCCCHH
Confidence 4555788887777777653 577788888888888888888888888888755321 22223589999999999999
Q ss_pred HHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChH
Q 000655 1086 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1165 (1370)
Q Consensus 1086 VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~ 1165 (1370)
||.+|||.|+++...+ ..+.+++++..++.|.+.-|+-.|..++.++.+.-.+..... .+..++..+..|.++.
T Consensus 121 IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~---~~~~~L~~LL~D~dp~ 194 (746)
T PTZ00429 121 VRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQ---DFKKDLVELLNDNNPV 194 (746)
T ss_pred HHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccccc---chHHHHHHHhcCCCcc
Confidence 9999999999998643 457788999999999999999999999999987533211111 1223344568899999
Q ss_pred HHHHHHHHHHHhhccCCC-----------------cchHH------------------HHHHHHhhhhHHHHhccCCChh
Q 000655 1166 MRRNAFAAFGALSNFGVG-----------------SQREA------------------FLEQIHAMLPRLILHIYDDDLS 1210 (1370)
Q Consensus 1166 vR~aAi~LfG~L~~~~~~-----------------~~~~~------------------~~eQv~~~LvpLLlHL~D~~~~ 1210 (1370)
|.++|+.++-++...+.. ...++ -.+.+... ++-+|+-.|+.
T Consensus 195 Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~---l~~~Lq~~N~A 271 (746)
T PTZ00429 195 VASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTR---VLPRMSHQNPA 271 (746)
T ss_pred HHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHH---HHHHhcCCCHH
Confidence 999999988777542110 00011 11223333 44445567899
Q ss_pred HHHHHHHHHHhhchhhhh-hhhhhhcc------ccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChh
Q 000655 1211 VRQACRNTLKQVAPFMEI-GVYGIFNS------HCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI 1283 (1370)
Q Consensus 1211 V~~ack~tL~~~a~lL~w-~l~~lf~~------~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~ 1283 (1370)
|+-+|-.++....+...- ....++.+ .+...+....|- .++. ...+.+.+|+.+..++..-.-.+++|..
T Consensus 272 VVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyv-aLr~-I~~i~~~~P~lf~~~~~~Ff~~~~Dp~y- 348 (746)
T PTZ00429 272 VVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYI-VCKN-IHALLVIFPNLLRTNLDSFYVRYSDPPF- 348 (746)
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHH-HHHH-HHHHHHHCHHHHHHHHHhhhcccCCcHH-
Confidence 999999998888765322 11221110 001122334442 3333 3667777887777765543344455543
Q ss_pred HHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1284 IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1284 IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
||..+.-.+-.++... +.+.+++-|.. -..|.|+.+++.|.+|+|.+.
T Consensus 349 IK~~KLeIL~~Lane~--------Nv~~IL~EL~e-Ya~d~D~ef~r~aIrAIg~lA 396 (746)
T PTZ00429 349 VKLEKLRLLLKLVTPS--------VAPEILKELAE-YASGVDMVFVVEVVRAIASLA 396 (746)
T ss_pred HHHHHHHHHHHHcCcc--------cHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHH
Confidence 7776665555444332 23555555666 456777777888888877776
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.61 E-value=4.7e-05 Score=104.92 Aligned_cols=270 Identities=13% Similarity=0.103 Sum_probs=194.4
Q ss_pred HHHHHhhhhcccccCcchHHHHHHHHhhhcCCc-hhhHHHH-HHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhH
Q 000655 1031 ICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYA 1106 (1370)
Q Consensus 1031 i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~-~~~l~~~-~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~~~ 1106 (1370)
.+..|+.+|.+++...+..|+..+.-+-..... ...+.+. .+..|.+-+..+++.+|.-|+-.|+|++.+ +.+...
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 467788888888888888887777766543322 2222222 566777778899999999999999999864 333323
Q ss_pred --HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCc
Q 000655 1107 --TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1184 (1370)
Q Consensus 1107 --~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1184 (1370)
..+++.+++.|.+.+.++...|..+|.+++..-+...+. .+..++..+++.+...+++.+|.+...+.+.
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~--------~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~ 598 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATIS--------QLTALLLGDLPESKVHVLDVLGHVLSVASLE 598 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHH--------HHHHHhcCCChhHHHHHHHHHHHHHhhcchh
Confidence 357889999999988999999999999998875544332 2334588888999999999999998754432
Q ss_pred chHHHHHHH---HhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHh
Q 000655 1185 QREAFLEQI---HAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1261 (1370)
Q Consensus 1185 ~~~~~~eQv---~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~ 1261 (1370)
.+..+. .+++.+|.--|+.+++.+.+.+..++..++.- . .++|..++..
T Consensus 599 ---d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~--~-----------------------~d~~~avv~a 650 (2102)
T PLN03200 599 ---DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS--R-----------------------QDLCESLATD 650 (2102)
T ss_pred ---HHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--C-----------------------hHHHHHHHHc
Confidence 233332 36777777777788999999888888776641 0 0112222221
Q ss_pred CcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 000655 1262 FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1341 (1370)
Q Consensus 1262 ~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1341 (1370)
. -+-..+..+++....+|..|++-+|.+......+++..+-...++..|.. |++++|+.|+..|+.||..+.+
T Consensus 651 g------aIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~-LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 651 E------IINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIK-LAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred C------CHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHH-HHhCCChHHHHHHHHHHHHHHc
Confidence 1 13344567788899999999999999988666555444333457888999 8999999999999999999986
Q ss_pred Hc
Q 000655 1342 SI 1343 (1370)
Q Consensus 1342 ~~ 1343 (1370)
..
T Consensus 724 ~~ 725 (2102)
T PLN03200 724 DP 725 (2102)
T ss_pred Cc
Confidence 44
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.54 E-value=8.2e-06 Score=102.61 Aligned_cols=307 Identities=18% Similarity=0.220 Sum_probs=201.2
Q ss_pred ChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCCh
Q 000655 1005 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 1084 (1370)
Q Consensus 1005 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~ 1084 (1370)
+...-.+++..|...+..+. .+...+-.++.++.+.+-..|..+-.+++.+...... +.--++|.+.+-+.||||
T Consensus 19 ~~~~~~~~l~kli~~~~~G~--~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~---~~~l~~n~l~kdl~~~n~ 93 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGY--DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE---LLILIINSLQKDLNSPNP 93 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH---HHHHHHHHHHHHHCSSSH
T ss_pred CHHHHHHHHHHHHHHHHcCC--CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHhhcCCCH
Confidence 45566677777777665544 3557777788888888888888888899988775432 222368999999999999
Q ss_pred hHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCCh
Q 000655 1085 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1164 (1370)
Q Consensus 1085 ~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~ 1164 (1370)
.+|.+|||.|+++....+ .+.+++.+...+.|.++.|+..|+.++.++... +++.+... +...+..++.|.++
T Consensus 94 ~~~~lAL~~l~~i~~~~~---~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~---~~~~l~~lL~d~~~ 166 (526)
T PF01602_consen 94 YIRGLALRTLSNIRTPEM---AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVEDE---LIPKLKQLLSDKDP 166 (526)
T ss_dssp HHHHHHHHHHHHH-SHHH---HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHGG---HHHHHHHHTTHSSH
T ss_pred HHHHHHHhhhhhhcccch---hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHHH---HHHHHhhhccCCcc
Confidence 999999999999986543 577889999999999999999999999999987 33333321 34556777899999
Q ss_pred HHHHHHHHHHHHhhccCCCcchH--HHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-h-----hhhhhcc
Q 000655 1165 KMRRNAFAAFGALSNFGVGSQRE--AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-G-----VYGIFNS 1236 (1370)
Q Consensus 1165 ~vR~aAi~LfG~L~~~~~~~~~~--~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~-----l~~lf~~ 1236 (1370)
.|+.+|+.++..+ + ..... .+..++...+..++ .+.+|-+....-..|...++.-.. . +..+...
T Consensus 167 ~V~~~a~~~l~~i-~---~~~~~~~~~~~~~~~~L~~~l---~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 167 SVVSAALSLLSEI-K---CNDDSYKSLIPKLIRILCQLL---SDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp HHHHHHHHHHHHH-H---CTHHHHTTHHHHHHHHHHHHH---TCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-c---cCcchhhhhHHHHHHHhhhcc---cccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHH
Confidence 9999999999999 2 11111 23333333333332 788888887777777777664332 2 1111111
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHH
Q 000655 1237 HCFNSDHRSDYETFVRDLTRQFVQHFPS--RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFG 1314 (1370)
Q Consensus 1237 ~~~~~~~~l~~~~f~~~i~k~L~~~~~~--~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~ 1314 (1370)
+. ......+-+.++.+..-.+. .+...+.....++.|+.+++|-.|..-+..+....+..-. .....
T Consensus 240 --l~----s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~---~~~~~-- 308 (526)
T PF01602_consen 240 --LQ----SSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF---NQSLI-- 308 (526)
T ss_dssp --HH----HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG---THHHH--
T ss_pred --hh----ccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh---hhhhh--
Confidence 00 01133444555555553333 3466677777788888888998888777777666522111 11111
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHHc
Q 000655 1315 LLVVKLSQSADAIVRATCSSSLGWLLKSI 1343 (1370)
Q Consensus 1315 ~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1343 (1370)
+.- ++.|+|+.||..|.+.|..+....
T Consensus 309 -~~~-l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 309 -LFF-LLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp -HHH-HHCSSSHHHHHHHHHHHHHH--HH
T ss_pred -hhe-ecCCCChhHHHHHHHHHhhccccc
Confidence 222 455777888887777766665433
No 14
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.37 E-value=0.025 Score=71.89 Aligned_cols=511 Identities=13% Similarity=0.160 Sum_probs=295.6
Q ss_pred HHHccCChhHHHHHHHHHHHhccCCChh-hHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHh--hcCcHHHHHHHH
Q 000655 751 SVCILLTKDELVATLHSCTTAICDRTKQ-SAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAV--HITDKHLRLETL 827 (1370)
Q Consensus 751 ~i~~~L~~~el~~~l~~ll~~L~d~~~~-~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~--~i~~~~~r~~~l 827 (1370)
.++-..+.+-+..++..++++|..+-.. ..+.-.++|..+....|.++. +-.++|+-.+..-.. ....+..|+..+
T Consensus 200 ~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~-~h~~~ivp~v~~y~~~~e~~dDELrE~~l 278 (1233)
T KOG1824|consen 200 HLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFG-SHLDKIVPLVADYCNKIEEDDDELREYCL 278 (1233)
T ss_pred HHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhh-cccchhhHHHHHHhcccccCcHHHHHHHH
Confidence 4556778888899999999999877443 347788899999999999994 446766666554332 445678999999
Q ss_pred HHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCCcc--
Q 000655 828 GAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEK-- 905 (1370)
Q Consensus 828 ~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d~~l~~~vL~~LL~~L~~~p~~~e~~~~-- 905 (1370)
+|+-++-...+.+++ | -.+.++..+++.+.-.|-|..+++.
T Consensus 279 Qale~fl~rcp~ei~------------------------p-------------~~pei~~l~l~yisYDPNy~yd~~eDe 321 (1233)
T KOG1824|consen 279 QALESFLRRCPKEIL------------------------P-------------HVPEIINLCLSYISYDPNYNYDTEEDE 321 (1233)
T ss_pred HHHHHHHHhChhhhc------------------------c-------------cchHHHHHHHHHhccCCCCCCCCccch
Confidence 999888888777543 1 1245777888888877776643310
Q ss_pred ----------CCCCCCCCCCCc-cchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChH
Q 000655 906 ----------GDYSSHSADTWI-DDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPL 974 (1370)
Q Consensus 906 ----------~~~~~~~~~~~~-~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~ 974 (1370)
+++..+-+.+.. .--+--||.-.+--+.... .+-+..+|-.+=-+++-++ + ...=+=+
T Consensus 322 d~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR----~E~L~~~~q~l~p~lI~Rf------k-EREEnVk 390 (1233)
T KOG1824|consen 322 DAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR----LEMLPDFYQTLGPALISRF------K-EREENVK 390 (1233)
T ss_pred hhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc----HHHHHHHHHHhCHHHHHHH------H-HHhhhHH
Confidence 000011111111 1111226666666666644 2333333333333333333 0 0011224
Q ss_pred HHHHHHHHHHHHhhcchHHHH----HHHhcCCCCChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHH
Q 000655 975 RAILTSFQAFCECVGDLEMRK----ILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAA 1050 (1370)
Q Consensus 975 ~~aleAlk~ll~~~g~~~~~~----~L~~~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a 1050 (1370)
...++|+.++|..++.|.-.. .+++ ||-.+. +.|. ..+++.|+..+.+-+++..-+-|.-+
T Consensus 391 ~dvf~~yi~ll~qt~~~~~~~~d~d~~e~-~g~~s~-----------~~~L---~~~~~~iVkai~~qlr~ks~kt~~~c 455 (1233)
T KOG1824|consen 391 ADVFHAYIALLKQTRPVIEVLADNDAMEQ-GGTPSD-----------LSML---SDQVPLIVKAIQKQLREKSVKTRQGC 455 (1233)
T ss_pred HHHHHHHHHHHHcCCCCcccccCchhhhc-cCCccc-----------hHHH---HhhhHHHHHHHHHHHhhccccchhhH
Confidence 578899999999988875432 2333 221100 1111 12456666666666776666678888
Q ss_pred HHHHHHhhhcC-CchhhHHHHHHHHHHhhcCCC--ChhHHHHHhhhc----cCCcchhhhhhHHHHHHHHHhhcccCChh
Q 000655 1051 AAALSEFVRYS-GGFDSLLEQMVEALCRHVSDE--SPTVRGLCLRGL----VQIPSIHIHQYATQVLSVILALLDDLDES 1123 (1370)
Q Consensus 1051 ~af~sELl~~~-~~~~~l~~~~i~~L~~~l~D~--~~~VR~lsLrGL----gnl~~~~v~~~~~~lL~all~~L~d~d~~ 1123 (1370)
...++|+++.. .....-+..++.....++.|- +...+..+|-=| ++-+.+..+.|.+.+.+-++.+..|.--.
T Consensus 456 f~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyK 535 (1233)
T KOG1824|consen 456 FLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYK 535 (1233)
T ss_pred HHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHh
Confidence 89999999964 332222334555666666774 445555555433 33344455677777777777777776678
Q ss_pred HHHHHHHHHHHHhccCCcC------C----cchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHH
Q 000655 1124 VQLTAVSCLLTILKSSSKD------A----VEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQI 1193 (1370)
Q Consensus 1124 V~leAm~~L~~lL~~l~~~------~----~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv 1193 (1370)
|..||+.+...+...+.+. + ++.++...-.|++. .|.+-+||..||...|.+... ..+.+....
T Consensus 536 isaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a--~d~DqeVkeraIscmgq~i~~----fgD~l~~eL 609 (1233)
T KOG1824|consen 536 ISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKA--TDSDQEVKERAISCMGQIIAN----FGDFLGNEL 609 (1233)
T ss_pred hhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHH----Hhhhhhhhh
Confidence 9999999888776544322 2 33344444445554 567789999999999999872 225566777
Q ss_pred HhhhhHHHHhccCCChhHHHHHHHHHHhhchh---------hhh---hhhhhhccccCCcCCCCChHHHHHHHHHHHHHh
Q 000655 1194 HAMLPRLILHIYDDDLSVRQACRNTLKQVAPF---------MEI---GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1261 (1370)
Q Consensus 1194 ~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l---------L~w---~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~ 1261 (1370)
-.+|+-|+-.|+.+ --|-++-.||..++.. +.- .+...++++. ..-++.+-.+++.+.+.....
T Consensus 610 ~~~L~il~eRl~nE--iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~--r~lr~~~l~a~~~L~~~~~~~ 685 (1233)
T KOG1824|consen 610 PRTLPILLERLGNE--ITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ--RALRLATLTALDKLVKNYSDS 685 (1233)
T ss_pred HHHHHHHHHHHhch--hHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcc
Confidence 78888888888865 3455666677766622 111 1112222220 011233334444444433333
Q ss_pred Ccch-HHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1262 FPSR-IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1262 ~~~~-~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
.|.. +...+-...+...-+.-++-+.|+-|.-.+....+.-... -.+.+...+.. |++ +|.++..|-.++-.++
T Consensus 686 ~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~--~~~~iL~~ii~-ll~--Spllqg~al~~~l~~f 760 (1233)
T KOG1824|consen 686 IPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLK--ISNPILDEIIR-LLR--SPLLQGGALSALLLFF 760 (1233)
T ss_pred ccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHH--HhhhhHHHHHH-Hhh--CccccchHHHHHHHHH
Confidence 3222 2222333334555556667777887777666655533321 12445555555 444 4566666665544443
No 15
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.36 E-value=2.5e-05 Score=94.44 Aligned_cols=207 Identities=11% Similarity=-0.004 Sum_probs=142.9
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhH
Q 000655 1072 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1151 (1370)
Q Consensus 1072 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i 1151 (1370)
+..|.+.+.|+++.||.-+.++||.+.. +...+.++..|.+.+..|...++.+++.... .. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~----~~-~~----- 150 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH----DP-GP----- 150 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc----Ch-HH-----
Confidence 6788889999999999999999999986 5667888888988888899888888777321 11 12
Q ss_pred HhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hh
Q 000655 1152 SVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GV 1230 (1370)
Q Consensus 1152 ~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l 1230 (1370)
.+.++++|+++.||..|+..+|.+..- ..+.+|...+.|+|+.|+.++-.++...+.--.| .+
T Consensus 151 --~L~~~L~d~d~~Vra~A~raLG~l~~~--------------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l 214 (410)
T TIGR02270 151 --ALEAALTHEDALVRAAALRALGELPRR--------------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVC 214 (410)
T ss_pred --HHHHHhcCCCHHHHHHHHHHHHhhccc--------------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHH
Confidence 344677899999999999999998751 1334455669999999999999999888764344 33
Q ss_pred hhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHH
Q 000655 1231 YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYT 1310 (1370)
Q Consensus 1231 ~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e 1310 (1370)
...... .| .. . ...+...+..--.. ..+......++++. +|.+|+..+|.+.. .
T Consensus 215 ~~~~~~----~g-~~---~-~~~l~~~lal~~~~---~a~~~L~~ll~d~~--vr~~a~~AlG~lg~------------p 268 (410)
T TIGR02270 215 RRFQVL----EG-GP---H-RQRLLVLLAVAGGP---DAQAWLRELLQAAA--TRREALRAVGLVGD------------V 268 (410)
T ss_pred HHHHhc----cC-cc---H-HHHHHHHHHhCCch---hHHHHHHHHhcChh--hHHHHHHHHHHcCC------------c
Confidence 332221 11 10 1 11222223222222 33444445677755 89999999996653 3
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1311 QVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1311 ~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
.....|+. +..|+. +|+.|.+|+..+-
T Consensus 269 ~av~~L~~-~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 269 EAAPWCLE-AMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred chHHHHHH-HhcCcH--HHHHHHHHHHHhh
Confidence 34566777 455554 9999999977764
No 16
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=3e-05 Score=94.52 Aligned_cols=302 Identities=18% Similarity=0.182 Sum_probs=197.6
Q ss_pred HHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHH-Hhhhc----cCCcchhhh
Q 000655 1029 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGL-CLRGL----VQIPSIHIH 1103 (1370)
Q Consensus 1029 ~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~l-sLrGL----gnl~~~~v~ 1103 (1370)
-.+...+...++++....|.-|..-++.+++.......--..++..|.+..+|-++..|+- ++.+. ++++ .-..
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~E 211 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFE 211 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCC
Confidence 3344444555556666677777777777777543322222347889999999987766664 33322 1222 1456
Q ss_pred hhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCC
Q 000655 1104 QYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1183 (1370)
Q Consensus 1104 ~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~ 1183 (1370)
.|.-.+++.++..+.|.+..|+-.|+.+..-++..++..++..++.++.. .++++ ...-..+|+.++|.++...
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~---~l~~~-kWrtK~aslellg~m~~~a-- 285 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLG---SLLEA-KWRTKMASLELLGAMADCA-- 285 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHH---HHHHH-hhhhHHHHHHHHHHHHHhc--
Confidence 78888999999999999999999999999999999999999988887744 33444 6667789999999887622
Q ss_pred cchHHHHHHHHhh-hhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccc--cCCcCCCCChHHHHHHHHH-HH
Q 000655 1184 SQREAFLEQIHAM-LPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSH--CFNSDHRSDYETFVRDLTR-QF 1258 (1370)
Q Consensus 1184 ~~~~~~~eQv~~~-LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~~~--~~~~~~~l~~~~f~~~i~k-~L 1258 (1370)
..-.+.-... ++.|.--|.|..|.|+++...|+.+.+..... .+.....+. ++++-.+ .-++.+..+.+ .+
T Consensus 286 ---p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~-~~~e~~~~L~~ttF 361 (569)
T KOG1242|consen 286 ---PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSC-YTPECLDSLGATTF 361 (569)
T ss_pred ---hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCccc-chHHHHHhhcceee
Confidence 1222333333 34455678999999999999999999988777 554433332 1111100 00111111100 00
Q ss_pred HHhC-cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHH
Q 000655 1259 VQHF-PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1337 (1370)
Q Consensus 1259 ~~~~-~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1337 (1370)
+..= +-.+...+--.-.-+......+++.++..+|.+....++...-......++.+|.. -..||.|.||..|+.|||
T Consensus 362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~-~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE-NLDDAVPEVRAVAARALG 440 (569)
T ss_pred eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH-HhcCCChhHHHHHHHHHH
Confidence 0000 01111111111112333455678889999999999997666666778899999999 699999999999999998
Q ss_pred HHHHH
Q 000655 1338 WLLKS 1342 (1370)
Q Consensus 1338 ~l~k~ 1342 (1370)
.+.|.
T Consensus 441 ~l~e~ 445 (569)
T KOG1242|consen 441 ALLER 445 (569)
T ss_pred HHHHH
Confidence 87753
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.33 E-value=0.00054 Score=94.87 Aligned_cols=270 Identities=12% Similarity=0.077 Sum_probs=186.6
Q ss_pred HHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHH-H-HHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHH
Q 000655 1030 TICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-E-QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYAT 1107 (1370)
Q Consensus 1030 ~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~-~-~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~ 1107 (1370)
+.+..|..+|++++...+.-|++.++.+-.++...+..+ + .++..|.+-+++.++.+|.-++.+|.|+..+.- +
T Consensus 488 GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d----~ 563 (2102)
T PLN03200 488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD----A 563 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc----h
Confidence 456677778888888888889999998876443323333 2 256667777788899999999999999975311 1
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchh---HHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCc
Q 000655 1108 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI---LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGS 1184 (1370)
Q Consensus 1108 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~---l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~ 1184 (1370)
..++.+.+.|...+..+...++.+|++|+...+..+.... -..-...|-.+.+++++.++..|....+.+....
T Consensus 564 ~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~--- 640 (2102)
T PLN03200 564 ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR--- 640 (2102)
T ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC---
Confidence 2335555667666778888889999999876554321100 0112234455788999999999999999998721
Q ss_pred chHHHHHHHH--hhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhh-hhhhhccccCCcCCCCChHHHHHHHHHHHHHh
Q 000655 1185 QREAFLEQIH--AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIG-VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1261 (1370)
Q Consensus 1185 ~~~~~~eQv~--~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~-l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~ 1261 (1370)
....+++. +.++||+-+|+..+.+|++.+..||...+.-..-. ...+.... . .+
T Consensus 641 --~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~G------------a----V~----- 697 (2102)
T PLN03200 641 --QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAED------------A----IK----- 697 (2102)
T ss_pred --hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcC------------C----HH-----
Confidence 22233332 78999999999999999999999988866421111 11111100 1 11
Q ss_pred CcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 000655 1262 FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1341 (1370)
Q Consensus 1262 ~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1341 (1370)
-.+..++++...++..|+.-++.+.+..+. ..++..+..+..|.+ ++++-.+.+|+.|+.||..|.+
T Consensus 698 ----------pL~~LL~~~d~~v~e~Al~ALanLl~~~e~--~~ei~~~~~I~~Lv~-lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 698 ----------PLIKLAKSSSIEVAEQAVCALANLLSDPEV--AAEALAEDIILPLTR-VLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred ----------HHHHHHhCCChHHHHHHHHHHHHHHcCchH--HHHHHhcCcHHHHHH-HHHhCChHHHHHHHHHHHHHHh
Confidence 123467888889999999888888887752 222334556888999 7888999999999999998884
Q ss_pred H
Q 000655 1342 S 1342 (1370)
Q Consensus 1342 ~ 1342 (1370)
.
T Consensus 765 ~ 765 (2102)
T PLN03200 765 H 765 (2102)
T ss_pred C
Confidence 3
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.31 E-value=7.1e-06 Score=103.14 Aligned_cols=309 Identities=18% Similarity=0.159 Sum_probs=206.2
Q ss_pred HHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhc
Q 000655 1015 DVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGL 1094 (1370)
Q Consensus 1015 lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGL 1094 (1370)
+.+..+...++..+.-+.+.+.+-|+++++.-|..|.-+++.+- .....+.++..+.+.+.|++|.||+-|+-++
T Consensus 64 l~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l 138 (526)
T PF01602_consen 64 LYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLSDPSPYVRKKAALAL 138 (526)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 33455555566668888999999999999999999999999864 2355567778888888999999999999999
Q ss_pred cCCcchhhhhhHHH-HHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHH
Q 000655 1095 VQIPSIHIHQYATQ-VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAA 1173 (1370)
Q Consensus 1095 gnl~~~~v~~~~~~-lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~L 1173 (1370)
..+....-. ..+. +++.+...|.|.|..|+..|...+..+ ...++....++..+..++.....+.++-++...+.+
T Consensus 139 ~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~ 215 (526)
T PF01602_consen 139 LKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRL 215 (526)
T ss_dssp HHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHH
Confidence 988643111 1122 688888889999999999999999999 222222225566666667766688899999999999
Q ss_pred HHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh--hhhhhhccccCCcCCCCChHHHH
Q 000655 1174 FGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFV 1251 (1370)
Q Consensus 1174 fG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w--~l~~lf~~~~~~~~~~l~~~~f~ 1251 (1370)
++.++.. .....-.. ..+.++.-.++..++.|+-.|-.++..+.+.-.. .....+.+..-..+..+.| +.
T Consensus 216 l~~~~~~---~~~~~~~~---~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~--~~ 287 (526)
T PF01602_consen 216 LRRYAPM---EPEDADKN---RIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRY--IA 287 (526)
T ss_dssp HTTSTSS---SHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHH--HH
T ss_pred HHhcccC---ChhhhhHH---HHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchheh--hH
Confidence 9987762 11111112 3344444445578889999999999988766552 2222233321111222222 23
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHhhc-CCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccC-CChhhH
Q 000655 1252 RDLTRQFVQHFPSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS-ADAIVR 1329 (1370)
Q Consensus 1252 ~~i~k~L~~~~~~~~~~~l~~~l~y~k-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D-pdp~VR 1329 (1370)
-+....+...+|..+. ...-.+.+++ ++...||..|...+..+.... ..+.++..|.. -.++ +|+.+|
T Consensus 288 L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~--------n~~~Il~eL~~-~l~~~~d~~~~ 357 (526)
T PF01602_consen 288 LDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES--------NVKEILDELLK-YLSELSDPDFR 357 (526)
T ss_dssp HHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH--------HHHHHHHHHHH-HHHHC--HHHH
T ss_pred HHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHHHhhccccc--------chhhHHHHHHH-HHHhccchhhh
Confidence 3444555556655555 4455566777 888999999987776665432 23556777777 4544 488899
Q ss_pred HHHHHHHHHHH-HHccccccc
Q 000655 1330 ATCSSSLGWLL-KSINSHSWR 1349 (1370)
Q Consensus 1330 ~~Aa~aL~~l~-k~~~~~~~~ 1349 (1370)
..+..+++.+. ++.....|-
T Consensus 358 ~~~i~~I~~la~~~~~~~~~~ 378 (526)
T PF01602_consen 358 RELIKAIGDLAEKFPPDAEWY 378 (526)
T ss_dssp HHHHHHHHHHHHHHGSSHHHH
T ss_pred hhHHHHHHHHHhccCchHHHH
Confidence 99999999887 555555554
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.15 E-value=0.0007 Score=84.78 Aligned_cols=298 Identities=19% Similarity=0.198 Sum_probs=192.4
Q ss_pred HhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh---h-hhHHHHH
Q 000655 1035 LTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI---H-QYATQVL 1110 (1370)
Q Consensus 1035 L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v---~-~~~~~lL 1110 (1370)
++..|++.+..+=..++.++..++... ....+.......|..++.+|++.||.++++.++++..+.. . -....++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 444444443333334444566666533 2234467788999999999999999999999999875421 1 1225678
Q ss_pred HHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchh-HHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHH
Q 000655 1111 SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI-LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1189 (1370)
Q Consensus 1111 ~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~-l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1189 (1370)
+.++..+.|.|..|.-.|+.+|.++...- .+...+ -.++...+..++...++.+|.-...++..+++. ..+.+
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~----S~~~~ 195 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH----SPEAA 195 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc----CHHHH
Confidence 99999999999999999999999999753 222222 112256677888888999999999999999862 23444
Q ss_pred HHHHHhhhhHHHHh-ccCCChhHHHHHHHHHHhhchh------hh-h----hhhhhhccccCCc-CCCCChHHHHHHHHH
Q 000655 1190 LEQIHAMLPRLILH-IYDDDLSVRQACRNTLKQVAPF------ME-I----GVYGIFNSHCFNS-DHRSDYETFVRDLTR 1256 (1370)
Q Consensus 1190 ~eQv~~~LvpLLlH-L~D~~~~V~~ack~tL~~~a~l------L~-w----~l~~lf~~~~~~~-~~~l~~~~f~~~i~k 1256 (1370)
..-+-.++++.++. |.|+|.-|...|-..|...|.. |. . ++..++....-.. ...+...-+++-++.
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 43344456666665 8888888998999988888741 11 1 1222222211000 011222333333333
Q ss_pred HHHHhCc----chHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhh-h---ccHHHHHHHHHHHhccCCChhh
Q 000655 1257 QFVQHFP----SRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHIL-S---LFYTQVFGLLVVKLSQSADAIV 1328 (1370)
Q Consensus 1257 ~L~~~~~----~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~-~---~~~e~l~~~L~~~Ll~Dpdp~V 1328 (1370)
... ..| +.+..|+......+.|..+.++..|.--+|.+.....-...- . ...+.+..+.-. ..+.....+
T Consensus 276 la~-~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~-~~~~~~~~l 353 (503)
T PF10508_consen 276 LAR-VSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGD-AIKSGSTEL 353 (503)
T ss_pred HHh-cChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHH-HhcCCchHH
Confidence 222 122 233456666667889999999999999999888655422221 1 123445555555 466788899
Q ss_pred HHHHHHHHHHHHH
Q 000655 1329 RATCSSSLGWLLK 1341 (1370)
Q Consensus 1329 R~~Aa~aL~~l~k 1341 (1370)
|.++-.||+.+..
T Consensus 354 k~r~l~al~~il~ 366 (503)
T PF10508_consen 354 KLRALHALASILT 366 (503)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999974
No 20
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.14 E-value=0.013 Score=72.49 Aligned_cols=299 Identities=16% Similarity=0.191 Sum_probs=196.7
Q ss_pred hhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCc---hhhHHHHHHHHHHhhcCCCC
Q 000655 1007 EKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDES 1083 (1370)
Q Consensus 1007 e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~---~~~l~~~~i~~L~~~l~D~~ 1083 (1370)
..|-+-|. .+-.++.+-+ ..+++.-++--+++..+..|..++...+..+..-+. .+.+-+.++..++..++...
T Consensus 696 r~ykqlv~-ttv~ia~KvG--~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt 772 (1172)
T KOG0213|consen 696 RNYKQLVD-TTVEIAAKVG--SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT 772 (1172)
T ss_pred cchhhHHH-HHHHHHHHhC--chHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc
Confidence 34444443 3555665544 345666667778889999999999888888876422 44555666766666665554
Q ss_pred hhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc
Q 000655 1084 PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1160 (1370)
Q Consensus 1084 ~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe 1160 (1370)
..+- .-+.|+|.+... .+++|.+++...++..|..+...|+..|....+.|...+..-+-...+-.+-.-|--..+
T Consensus 773 t~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylg 851 (1172)
T KOG0213|consen 773 TEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG 851 (1172)
T ss_pred cchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC
Confidence 4444 456788877543 678999999999999999998899888877777665554444333444445555566888
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCC
Q 000655 1161 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFN 1240 (1370)
Q Consensus 1161 de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~ 1240 (1370)
.|.++|=.+-+.+.-.+.++.+.....+ -+...|+.|.--|+..+..|...|-.-++.+|-. +
T Consensus 852 eeypEvLgsILgAikaI~nvigm~km~p---Pi~dllPrltPILknrheKVqen~IdLvg~Iadr--------------g 914 (1172)
T KOG0213|consen 852 EEYPEVLGSILGAIKAIVNVIGMTKMTP---PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR--------------G 914 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhccccccCC---ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc--------------C
Confidence 9999998877666666666544433333 2344555555556777888888887766666531 1
Q ss_pred cCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhh-----cc-------
Q 000655 1241 SDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILS-----LF------- 1308 (1370)
Q Consensus 1241 ~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~-----~~------- 1308 (1370)
. +..+..+++ .||=-| +..+||-...||+||+--.|++.+-..++.... +.
T Consensus 915 p-E~v~aREWM-RIcfeL---------------lelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~R 977 (1172)
T KOG0213|consen 915 P-EYVSAREWM-RICFEL---------------LELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNR 977 (1172)
T ss_pred c-ccCCHHHHH-HHHHHH---------------HHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhc
Confidence 1 234456665 334333 447888899999999999999887655444311 00
Q ss_pred ---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHcc
Q 000655 1309 ---------------YTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1344 (1370)
Q Consensus 1309 ---------------~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1344 (1370)
.-.|..+|.. ==+-|+..|+.-.-.||++++.+..
T Consensus 978 vcTtvaIaIVaE~c~pFtVLPalmn-eYrtPe~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 978 VCTTVAIAIVAETCGPFTVLPALMN-EYRTPEANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred hhhhhhhhhhhhhcCchhhhHHHHh-hccCchhHHHHhHHHHHHHHHHHHH
Confidence 1113344443 2345999999999999999987654
No 21
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=0.0017 Score=83.32 Aligned_cols=293 Identities=16% Similarity=0.097 Sum_probs=198.4
Q ss_pred hhhhcccccCcchHHHHH---HHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHH
Q 000655 1036 TKSINRQQRFQREAAAAA---LSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLS 1111 (1370)
Q Consensus 1036 ~~~L~s~~~~~Ri~a~af---~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~~~~lL~ 1111 (1370)
.-.++..+...|.+++.- |.++++.+.-.......++..+..-..|+++.||....-+..++..- ...+-.+.+++
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp 440 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLP 440 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccCh
Confidence 334455666666666533 44444432112223344556666778999999999999888877542 22333566789
Q ss_pred HHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHH
Q 000655 1112 VILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLE 1191 (1370)
Q Consensus 1112 all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~e 1191 (1370)
..+..+.|.+..|++.....++.+....+..++....-++-..|-.+-+|-+..+|.+.+..+=.++.- .....|.+
T Consensus 441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q---~~~~~~~~ 517 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ---LGVEFFDE 517 (759)
T ss_pred hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh---hhhHHhhH
Confidence 999999988888999999888888888888887776666666666677777899999999888877761 11233333
Q ss_pred HHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhh--h-hhhhhhccccCCcCC-CCChHHHHHHHHHHHHHhCcc--h
Q 000655 1192 QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFME--I-GVYGIFNSHCFNSDH-RSDYETFVRDLTRQFVQHFPS--R 1265 (1370)
Q Consensus 1192 Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~--w-~l~~lf~~~~~~~~~-~l~~~~f~~~i~k~L~~~~~~--~ 1265 (1370)
. ++.+. ...+.|..-+++++|...|...+..+| | ....+..... .+++ ++-|+.-.-+-+..|..=+.. .
T Consensus 518 ~-~~~l~--~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~-~~~q~~y~~R~t~l~si~~la~v~g~ei~ 593 (759)
T KOG0211|consen 518 K-LAELL--RTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLA-MDLQDNYLVRMTTLFSIHELAEVLGQEIT 593 (759)
T ss_pred H-HHHHH--HhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHH-HhcCcccchhhHHHHHHHHHHHHhccHHH
Confidence 3 22222 223678889999999999999999999 8 3333333221 1111 122332222333344433322 2
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1266 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1266 ~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
...|+--.....++|-+.||-+|+.+.=-++..+....+ .+.+..+++. |.+|+|..||-+|..|++.+.
T Consensus 594 ~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~----~~~v~pll~~-L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 594 CEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR----DEEVLPLLET-LSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH----HHHHHHHHHH-hccCcccchhHHHHHHHHHHH
Confidence 334555566688899999999999999888887775443 4789999999 899999999999999988765
No 22
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.012 Score=77.96 Aligned_cols=323 Identities=11% Similarity=0.107 Sum_probs=215.8
Q ss_pred HHHHHHHHHHhhcchHHH-HHHHh---cCCCCChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHH
Q 000655 977 ILTSFQAFCECVGDLEMR-KILAR---DGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAA 1052 (1370)
Q Consensus 977 aleAlk~ll~~~g~~~~~-~~L~~---~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~a 1052 (1370)
+..-|-+|-+-.|.-+++ ++|+. +--|++..+---|.+.||.---+...|+++.++--|+.|--+|+..-+-+=+-
T Consensus 941 TYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~s 1020 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTS 1020 (1702)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHH
Confidence 444555555566766654 66665 34799777777788777764444444556655555555544444333333333
Q ss_pred HHHHhhhcCC-chhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhcccCChh---H
Q 000655 1053 ALSEFVRYSG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDES---V 1124 (1370)
Q Consensus 1053 f~sELl~~~~-~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~---V 1124 (1370)
+---|+..+. .-......+..-|...+.+-.-.||..|.-+|..+..+ ++....+.+..++...+||--+. +
T Consensus 1021 IW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~a 1100 (1702)
T KOG0915|consen 1021 IWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREA 1100 (1702)
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444331 11233344677788888899999999999999988653 67777888999999999985554 4
Q ss_pred HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCC-----ChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhH
Q 000655 1125 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM-----NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPR 1199 (1370)
Q Consensus 1125 ~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede-----~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~Lvp 1199 (1370)
.-.+..+|+++.-++..-+-+.---++.--+-||.=|+ =.+||..||...-+|+++.++..+.. ..-|+|
T Consensus 1101 a~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-----~~~LIp 1175 (1702)
T KOG0915|consen 1101 ADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-----FPKLIP 1175 (1702)
T ss_pred HHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-----hhHHHH
Confidence 55677888888776655443333344444556777664 47999999999999999766543333 356788
Q ss_pred HHHhccCC-ChhHH-----------HHH--------------HHHHHhhchhhhh-hhhhhhccc------cCCcCCCCC
Q 000655 1200 LILHIYDD-DLSVR-----------QAC--------------RNTLKQVAPFMEI-GVYGIFNSH------CFNSDHRSD 1246 (1370)
Q Consensus 1200 LLlHL~D~-~~~V~-----------~ac--------------k~tL~~~a~lL~w-~l~~lf~~~------~~~~~~~l~ 1246 (1370)
+++..-++ +|.|- +++ -.|+..|-+.+.. .+.++.-+- -.+-+-+..
T Consensus 1176 ~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg 1255 (1702)
T KOG0915|consen 1176 LLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVG 1255 (1702)
T ss_pred HHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchh
Confidence 88887777 34443 111 2456666666555 444433221 122223445
Q ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhh
Q 000655 1247 YETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHI 1304 (1370)
Q Consensus 1247 ~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~ 1304 (1370)
...|+--+.+.+..+..-...-++..++.=+++-.+.+|++=+.-.|++.+...+++.
T Consensus 1256 ~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~ 1313 (1702)
T KOG0915|consen 1256 CASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQM 1313 (1702)
T ss_pred HHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHH
Confidence 6788888888888888888899999999999999999999999999999998876554
No 23
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.036 Score=69.32 Aligned_cols=522 Identities=16% Similarity=0.170 Sum_probs=259.8
Q ss_pred HHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhHHHHHH
Q 000655 768 CTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVL 847 (1370)
Q Consensus 768 ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i~~~~~r~~~l~ai~~La~~h~~~vV~~~Ll 847 (1370)
.+..|+.+.+.....|++.+-.+= +.||...+-|+.+..+......-....+|++.+.+|--+.++-.++|+ ...
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA---~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl-~~~- 169 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIA---CIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVL-EQQ- 169 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHH---HhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHH-HHH-
Confidence 456678888888888888776653 456655567888888777666666667899999999888877766644 222
Q ss_pred hhhcccchhhhhccccCCCCchhHHHHhhcCcccHH--HHHHHHHHHHc---cCCCccCCCccCCCCCC----CCCCCcc
Q 000655 848 ATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSF--LFLEHLISALN---QTPFVKGDMEKGDYSSH----SADTWID 918 (1370)
Q Consensus 848 ~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d~~l~~--~vL~~LL~~L~---~~p~~~e~~~~~~~~~~----~~~~~~~ 918 (1370)
..+++|.- ..++.+- +++... --+.-|+.-|. ...-++. .+++-.. .|.....
T Consensus 170 ---sN~iLtaI---v~gmrk~---------e~s~~vRLaa~~aL~nsLef~~~nF~~E~---ern~iMqvvcEatq~~d~ 231 (859)
T KOG1241|consen 170 ---SNDILTAI---VQGMRKE---------ETSAAVRLAALNALYNSLEFTKANFNNEM---ERNYIMQVVCEATQSPDE 231 (859)
T ss_pred ---HhHHHHHH---Hhhcccc---------CCchhHHHHHHHHHHHHHHHHHHhhccHh---hhceeeeeeeecccCCcH
Confidence 01111110 0111211 111111 11223333222 1111111 1111111 1111111
Q ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccC---------CC-----------------CCCCC
Q 000655 919 DDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGL---------AS-----------------SGQHE 972 (1370)
Q Consensus 919 ~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~---------~~-----------------~~~~~ 972 (1370)
-+-.||..-|.-+... |-+-++.+.-+=+.++-+.--++-+- +. .+...
T Consensus 232 -~i~~aa~~ClvkIm~L----yY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 232 -EIQVAAFQCLVKIMSL----YYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred -HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 1223444444443331 22222222222122221111111100 00 01222
Q ss_pred h--HHHHHHHHHHHHHhhcchHHHHHHHhcC------CCCChhhHHHHHH--HHHhHhhhcCchhHHHHHHHHhhhhccc
Q 000655 973 P--LRAILTSFQAFCECVGDLEMRKILARDG------EQNDKEKWINLIG--DVAGCVSIKRPKEVQTICLILTKSINRQ 1042 (1370)
Q Consensus 973 P--~~~aleAlk~ll~~~g~~~~~~~L~~~g------~W~~~e~~~~gV~--lLAr~m~~~~~~~~~~i~~~L~~~L~s~ 1042 (1370)
| ..++..|++.++ -...+.|.+++ .|+-.. --|+. +.|++. ....++.++.++-..++++
T Consensus 307 p~~~~fa~~a~~~v~-----P~Ll~~L~kqde~~d~DdWnp~k--AAg~CL~l~A~~~---~D~Iv~~Vl~Fiee~i~~p 376 (859)
T KOG1241|consen 307 PSSKYFARQALQDVV-----PVLLELLTKQDEDDDDDDWNPAK--AAGVCLMLFAQCV---GDDIVPHVLPFIEENIQNP 376 (859)
T ss_pred chhhHHHHHHHhHhh-----HHHHHHHHhCCCCcccccCcHHH--HHHHHHHHHHHHh---cccchhhhHHHHHHhcCCc
Confidence 4 235666665433 12334455533 355111 12333 334432 2346788888888889999
Q ss_pred ccCcchHHHHHHHHhhhcCCc--hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-----hhhhhHHHHHHHHHh
Q 000655 1043 QRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQVLSVILA 1115 (1370)
Q Consensus 1043 ~~~~Ri~a~af~sELl~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-----~v~~~~~~lL~all~ 1115 (1370)
+=++|-+|+-.|.-.+..|.. ........+..+.+-..||+-.||.-+.-.+|.++.+ --..|-+.++.+++.
T Consensus 377 dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~ 456 (859)
T KOG1241|consen 377 DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE 456 (859)
T ss_pred chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence 999998888777777776543 2233455777777888899999999999999988653 123466889999999
Q ss_pred hcccCChhHHHHHHHHHHHHhccCCcCC--------cchhHHhHHhhhcCcC---cCCChHHHHHHHHHHHHhhccCCCc
Q 000655 1116 LLDDLDESVQLTAVSCLLTILKSSSKDA--------VEPILLNLSVRLRNLQ---VSMNVKMRRNAFAAFGALSNFGVGS 1184 (1370)
Q Consensus 1116 ~L~d~d~~V~leAm~~L~~lL~~l~~~~--------~~~~l~~i~~~lrpff---ede~~~vR~aAi~LfG~L~~~~~~~ 1184 (1370)
||.| ..+|...+=.++-.+.+...+.. ..+++..|...|-.-= +--...+|.+|++.+|++++++...
T Consensus 457 gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 457 GLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD 535 (859)
T ss_pred Hhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence 9987 34454444444444332222222 2234444444442211 2245789999999999999976654
Q ss_pred chHHHHHH-------HHhhhhHHHHhccCCCh-hHHHH--H---HHHHHhhch--------hhhhhhhhhhccccCCcCC
Q 000655 1185 QREAFLEQ-------IHAMLPRLILHIYDDDL-SVRQA--C---RNTLKQVAP--------FMEIGVYGIFNSHCFNSDH 1243 (1370)
Q Consensus 1185 ~~~~~~eQ-------v~~~LvpLLlHL~D~~~-~V~~a--c---k~tL~~~a~--------lL~w~l~~lf~~~~~~~~~ 1243 (1370)
..+...+- +.+++-.=.+-+.|... .+.+. | ...+++.++ +++- +-.+|++. +.
T Consensus 536 vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~l-flri~~s~----~s 610 (859)
T KOG1241|consen 536 VYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGL-FLRIFESK----RS 610 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHH-HHHHHcCC----cc
Confidence 43332222 22222222222222211 01110 0 011111111 0000 00122220 00
Q ss_pred CCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhc----C-CChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHH
Q 000655 1244 RSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFE----A-PWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVV 1318 (1370)
Q Consensus 1244 ~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~k----S-~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~ 1318 (1370)
+.-.++....+ ..|+.+.......|+..-.+|+- + ....+-.+|+=++|-+...+.++.+ ...+.+.+.|..
T Consensus 611 ~~v~e~a~laV-~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~--py~d~~mt~Lvq 687 (859)
T KOG1241|consen 611 AVVHEEAFLAV-STLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL--PYCDELMTVLVQ 687 (859)
T ss_pred ccchHHHHHHH-HHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHH
Confidence 11112222222 34455555555555555555542 2 2245888999999988888876665 344666676666
Q ss_pred HhccCCC-------hhhHHHHHHHHH
Q 000655 1319 KLSQSAD-------AIVRATCSSSLG 1337 (1370)
Q Consensus 1319 ~Ll~Dpd-------p~VR~~Aa~aL~ 1337 (1370)
.++.|. +...++.-.||.
T Consensus 688 -~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 688 -CLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred -HccCccccccccchHHHHHHHHHHH
Confidence 555443 334555555554
No 24
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00024 Score=86.41 Aligned_cols=292 Identities=17% Similarity=0.173 Sum_probs=183.3
Q ss_pred HHHHhhhhcccccCcchHHHHHHHHhhhcCC---chhhHHHHHHHHHHhhc-CCCChhHHHHHhhhccCCcchhh---hh
Q 000655 1032 CLILTKSINRQQRFQREAAAAALSEFVRYSG---GFDSLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPSIHI---HQ 1104 (1370)
Q Consensus 1032 ~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~---~~~~l~~~~i~~L~~~l-~D~~~~VR~lsLrGLgnl~~~~v---~~ 1104 (1370)
+..++-.+.|....++++++..|-.++.... .......-++..|-+.+ ++.+|.+|.-|.-.|.||+.+.- +.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4444555667777779999999988887532 22222223666777777 48889999999999999998611 11
Q ss_pred h-HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHh--HHhhhcC-cCcCCChHHHHHHHHHHHHhhcc
Q 000655 1105 Y-ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN--LSVRLRN-LQVSMNVKMRRNAFAAFGALSNF 1180 (1370)
Q Consensus 1105 ~-~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~--i~~~lrp-ffede~~~vR~aAi~LfG~L~~~ 1180 (1370)
. -...++.++..+...++.|.-.|+.+|++|...-. ..+.+.++ +..-|-. +..+....+...+.-++..|++
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~--~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr- 224 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSP--DCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR- 224 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCCh--HHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc-
Confidence 1 13457778999999999999999999999987432 12222111 1111122 3333334677777777777776
Q ss_pred CCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchh----------hhh--hhhhhhccccCCcCCCCChH
Q 000655 1181 GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF----------MEI--GVYGIFNSHCFNSDHRSDYE 1248 (1370)
Q Consensus 1181 ~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l----------L~w--~l~~lf~~~~~~~~~~l~~~ 1248 (1370)
|+...+=.++|...|+-|..++++.|++|..-+-.|+.-++-- .|. .+.+++.... ....-+
T Consensus 225 --gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~----~~v~~P 298 (514)
T KOG0166|consen 225 --GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS----PKVVTP 298 (514)
T ss_pred --CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC----cccccH
Confidence 5545555688999999999999999999998777777765521 111 2222222210 000000
Q ss_pred HHHHHH---------HHHHHHhCcchHHHHHHHHHHhhc-CCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHH
Q 000655 1249 TFVRDL---------TRQFVQHFPSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVV 1318 (1370)
Q Consensus 1249 ~f~~~i---------~k~L~~~~~~~~~~~l~~~l~y~k-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~ 1318 (1370)
.++.+ -...+-. .-.+......+. ||-..||..|+|+|+-+.-.- .++..++=...++..|..
T Consensus 299 -aLRaiGNIvtG~d~QTq~vi~-----~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~-~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 299 -ALRAIGNIVTGSDEQTQVVIN-----SGALPVLSNLLSSSPKESIKKEACWTISNITAGN-QEQIQAVIDANLIPVLIN 371 (514)
T ss_pred -HHhhccceeeccHHHHHHHHh-----cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC-HHHHHHHHHcccHHHHHH
Confidence 00000 0000110 112333333444 778889999999999887633 345444433457888999
Q ss_pred HhccCCChhhHHHHHHHHHHHH
Q 000655 1319 KLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1319 ~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
+++.-|-..|+.|+.|++.+-
T Consensus 372 -~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 372 -LLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred -HHhccchHHHHHHHHHHHhhc
Confidence 788888999999999988754
No 25
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.014 Score=71.95 Aligned_cols=517 Identities=13% Similarity=0.101 Sum_probs=291.4
Q ss_pred HhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCCCCChhHHHH---HHHH
Q 000655 674 MYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN---RIVS 750 (1370)
Q Consensus 674 ~l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~d~~~~l~~~~~~~~~~~~~---~i~~ 750 (1370)
.++|.=.|+...+|..-+++-...+.-..- +. ...+..+.+. .+.+.. . ..+.+ -.-.
T Consensus 21 ~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~-------------~~-v~~l~~~~~~--~l~~~~-~--~~~~~~~~v~~~ 81 (569)
T KOG1242|consen 21 FLVSAGEDRRIDVRGNMLEAGEAAINQHGD-------------QN-VLNLKPCFEQ--RLNSLH-N--DNLRNNVVVLEG 81 (569)
T ss_pred eecccCCCcchhhHHhHHHHHHHHHHhhhH-------------HH-HHHHHHHHHH--Hhccch-h--HHHhhhhHHHHH
Confidence 344455999999999988887665443210 11 1122222211 222211 0 11111 1222
Q ss_pred HHHccCChhH--HHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHH
Q 000655 751 SVCILLTKDE--LVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLG 828 (1370)
Q Consensus 751 ~i~~~L~~~e--l~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i~~~~~r~~~l~ 828 (1370)
+.++++...+ ...++.-+++.+.-|.++...+.+.-|....-.-. .++.......+.+.+. .+.-..|.++-.
T Consensus 82 ~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~----~~~~~~~l~~l~~ll~-~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 82 TLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSK----GLSGEYVLELLLELLT-STKIAERAGAAY 156 (569)
T ss_pred HHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhh----ccCHHHHHHHHHHHhc-cccHHHHhhhhH
Confidence 3444554333 23577888899988888777776665555442211 1223333344444344 555555666655
Q ss_pred HHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCC
Q 000655 829 AISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDY 908 (1370)
Q Consensus 829 ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~ 908 (1370)
++..+......+ .+ --..++..|-...+.+..+.-
T Consensus 157 ~~ag~v~g~~i~----~~----------------------------------~~~~~l~~l~~ai~dk~~~~~------- 191 (569)
T KOG1242|consen 157 GLAGLVNGLGIE----SL----------------------------------KEFGFLDNLSKAIIDKKSALN------- 191 (569)
T ss_pred HHHHHHcCcHHh----hh----------------------------------hhhhHHHHHHHHhcccchhhc-------
Confidence 555555543321 11 012334444443333322211
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHH-HHHHHHHHHHHh
Q 000655 909 SSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLR-AILTSFQAFCEC 987 (1370)
Q Consensus 909 ~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~-~aleAlk~ll~~ 987 (1370)
+. ..+-|..+.+..+- +...+-+...+|.+|..+ |- ..+-.| .+.+|.|+++.+
T Consensus 192 -------re---~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~----~d--------~~~~Vr~Aa~~a~kai~~~ 246 (569)
T KOG1242|consen 192 -------RE---AALLAFEAAQGNLG---PPFEPYIVPILPSILTNF----GD--------KINKVREAAVEAAKAIMRC 246 (569)
T ss_pred -------HH---HHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHh----hc--------cchhhhHHHHHHHHHHHHh
Confidence 11 11222223332222 245666777888877744 11 111122 688899999999
Q ss_pred hcchHHHHHHHh------cCCCCChhhHHHHHHHHHhHhhhcCchh----HHHHHHHHhhhhcccccCcchHHHHHHHHh
Q 000655 988 VGDLEMRKILAR------DGEQNDKEKWINLIGDVAGCVSIKRPKE----VQTICLILTKSINRQQRFQREAAAAALSEF 1057 (1370)
Q Consensus 988 ~g~~~~~~~L~~------~g~W~~~e~~~~gV~lLAr~m~~~~~~~----~~~i~~~L~~~L~s~~~~~Ri~a~af~sEL 1057 (1370)
.-...+-..+-- ...|.++..-.++++ +|+.+.+.+ ++.++--+...|.......|-++...+..+
T Consensus 247 ~~~~aVK~llpsll~~l~~~kWrtK~aslellg----~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 247 LSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG----AMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred cCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH----HHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 877666433221 126887766555554 566666654 555555555666666666777777666554
Q ss_pred hhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hh-hhhHHHHHHHHHhhcccCChhHHHHHHHHHHHH
Q 000655 1058 VRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HI-HQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1135 (1370)
Q Consensus 1058 l~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v-~~~~~~lL~all~~L~d~d~~V~leAm~~L~~l 1135 (1370)
-. ......+...+..|.+.+.||+..+.. ++++||.-... .| ..-..-+.+-+-.||.+.+...--.+.....+.
T Consensus 323 ~s--vidN~dI~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm 399 (569)
T KOG1242|consen 323 GS--VIDNPDIQKIIPTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNM 399 (569)
T ss_pred HH--hhccHHHHHHHHHHHHHhcCcccchHH-HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 32 222333677899999999999977764 77899876532 12 122345577778889888777777777777777
Q ss_pred hccC-CcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhcc-CCChhHHH
Q 000655 1136 LKSS-SKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY-DDDLSVRQ 1213 (1370)
Q Consensus 1136 L~~l-~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~-D~~~~V~~ 1213 (1370)
-... +.+.+.+++..|...++.-+.|--+++|+.|-+.+|.+.+-.+. +-+..++|.+.|.- ++...|-.
T Consensus 400 ~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~--------~~f~d~~p~l~e~~~~~k~~~~~ 471 (569)
T KOG1242|consen 400 CKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE--------VSFDDLIPELSETLTSEKSLVDR 471 (569)
T ss_pred HHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh--------hcccccccHHHHhhccchhhhhh
Confidence 7766 67889999999999999999999999999999999999983221 11246777777755 32222211
Q ss_pred -HHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 000655 1214 -ACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFS 1292 (1370)
Q Consensus 1214 -ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fi 1292 (1370)
.+...+.. +... .+.+ .+++.+.++.+ .+ -..-.|+++|-.=++|+
T Consensus 472 ~g~aq~l~e-----------vl~~--~~v~---~~~~~~~~~~a---------------~~--~~~~~~~~~~dg~~~~~ 518 (569)
T KOG1242|consen 472 SGAAQDLSE-----------VLAG--LGVE---KVEDILPEILA---------------NA--SSVLIDERIRDGVIWLF 518 (569)
T ss_pred HHHhhhHHH-----------HHhc--ccch---HHHHHHHHHHH---------------HH--hhccchhhhccCeeehh
Confidence 11122222 2221 1110 11222222211 11 12445777888888888
Q ss_pred hhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHH
Q 000655 1293 SSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSS 1335 (1370)
Q Consensus 1293 G~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~a 1335 (1370)
+++--..+.+.... .-+++..+.. =+-|.|+.+|..+-++
T Consensus 519 ~~lp~~~~~~~~~y--i~~i~~~~~k-~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 519 YLLPYIFGFQFQPY--IHEILDEFLK-GLADNDEKGRDTALEA 558 (569)
T ss_pred hccchhhhHHhHHH--HHHHHHHHHH-HhhhcCCccccchhhh
Confidence 87765555555433 3555666555 3558999999887766
No 26
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.76 E-value=0.0012 Score=80.10 Aligned_cols=123 Identities=20% Similarity=0.156 Sum_probs=93.9
Q ss_pred HHHHHHHHhhc-CCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchh
Q 000655 1069 EQMVEALCRHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI 1147 (1370)
Q Consensus 1069 ~~~i~~L~~~l-~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~ 1147 (1370)
+..+..|...+ .|+++.|+..+..++..... +..+.+++..|+|.++.|..++..+|+.+-. ....
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----~~a~-- 119 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED-------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG----RQAE-- 119 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC-------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----hHHH--
Confidence 34567788888 68999999999999875543 3348899999999999999999999997543 2222
Q ss_pred HHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhch
Q 000655 1148 LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP 1224 (1370)
Q Consensus 1148 l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~ 1224 (1370)
..|.+.++++++.||.+++.+.|.-.. . ...+|+-.|+|+++.|+.++-.+|+.+..
T Consensus 120 -----~~L~~~L~~~~p~vR~aal~al~~r~~-----~----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 120 -----PWLEPLLAASEPPGRAIGLAALGAHRH-----D----------PGPALEAALTHEDALVRAAALRALGELPR 176 (410)
T ss_pred -----HHHHHHhcCCChHHHHHHHHHHHhhcc-----C----------hHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence 334567899999999999988887221 1 23356666789999999999999988653
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.73 E-value=0.00035 Score=78.16 Aligned_cols=182 Identities=19% Similarity=0.189 Sum_probs=116.5
Q ss_pred CChhHHHHHHHHHHHHhccC-CcCCcchhH---HhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHh
Q 000655 1120 LDESVQLTAVSCLLTILKSS-SKDAVEPIL---LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA 1195 (1370)
Q Consensus 1120 ~d~~V~leAm~~L~~lL~~l-~~~~~~~~l---~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~ 1195 (1370)
.|=+.+.+|+..|..++..- .......+. -.+...+-..+.|.|..|-..|..+++.++...+ ..|...+-.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~----~~~~~~~~~ 94 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG----SHFEPYADI 94 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG----GGGHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh----HhHHHHHHH
Confidence 34468899999999998765 122222222 2233455678889999999999999999998432 336666777
Q ss_pred hhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 000655 1196 MLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ 1275 (1370)
Q Consensus 1196 ~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~ 1275 (1370)
.+++|+-.+.|.+..|++++..||..+....+. ....+ ..-...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------------------~~~~~------------------~~~l~~ 138 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSY------------------SPKIL------------------LEILSQ 138 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------------------HHH------------------HHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------------------HHHHH------------------HHHHHH
Confidence 888899999999999999999999886643110 00110 111123
Q ss_pred hhcCCChhHHHHHHHHHhhhhccCc--hhhh-hhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000655 1276 AFEAPWPIIQANAIYFSSSILCLCD--DQHI-LSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1342 (1370)
Q Consensus 1276 y~kS~~~~IR~aA~~fiG~l~~~~~--~~~~-~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1342 (1370)
..++..+.+|..++.++..++...+ .... .....+.+.+.+.. ++.|++|.||..|.+++..+.+.
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~-~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK-LLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH-HHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHH
Confidence 6678889999999999999988777 2222 12235779999999 89999999999999999988754
No 28
>PTZ00429 beta-adaptin; Provisional
Probab=97.71 E-value=0.01 Score=76.91 Aligned_cols=289 Identities=11% Similarity=0.090 Sum_probs=153.9
Q ss_pred ChhhHHHHHHHHHhHhhhcC-chhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCC
Q 000655 1005 DKEKWINLIGDVAGCVSIKR-PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDES 1083 (1370)
Q Consensus 1005 ~~e~~~~gV~lLAr~m~~~~-~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~ 1083 (1370)
++..++.|..+ |+|+.-+ +..+..++..+.+.+.+.+.-.|.+|+..+..+.+.... .......++.|.+-+.|+|
T Consensus 116 d~Np~IRaLAL--RtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-lv~~~~~~~~L~~LL~D~d 192 (746)
T PTZ00429 116 NSSPVVRALAV--RTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-LFYQQDFKKDLVELLNDNN 192 (746)
T ss_pred CCCHHHHHHHH--HHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-cccccchHHHHHHHhcCCC
Confidence 34445555543 5554332 223444555555556555655666666555555432211 0111235566666666666
Q ss_pred hhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc
Q 000655 1084 PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1160 (1370)
Q Consensus 1084 ~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe 1160 (1370)
|.|..-|+..|-.+... .. ......+..++..+.+.++--....+..|.+-- ..+ ..-...+..++.|.+.
T Consensus 193 p~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~----P~~-~~e~~~il~~l~~~Lq 266 (746)
T PTZ00429 193 PVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR----PSD-KESAETLLTRVLPRMS 266 (746)
T ss_pred ccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC----CCC-cHHHHHHHHHHHHHhc
Confidence 66666666666655321 11 111222344445554444444444444443311 111 2234567777888899
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhch----hhhhhhhhhhcc
Q 000655 1161 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAP----FMEIGVYGIFNS 1236 (1370)
Q Consensus 1161 de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~----lL~w~l~~lf~~ 1236 (1370)
+.|+.|-.+|+.+|=.+.... ...+.+++..-+.+.++-|...+++|+-.+=..+..+.. ++.-.+...|.+
T Consensus 267 ~~N~AVVl~Aik~il~l~~~~----~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~ 342 (746)
T PTZ00429 267 HQNPAVVMGAIKVVANLASRC----SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVR 342 (746)
T ss_pred CCCHHHHHHHHHHHHHhcCcC----CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcc
Confidence 999999999999999887643 234666766555443334444566666444333333221 222233333343
Q ss_pred ccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHH
Q 000655 1237 HCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLL 1316 (1370)
Q Consensus 1237 ~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L 1316 (1370)
. .| . .| .=...+--...--.++.+...+.....|..+....+++.|+.-||.+....+.. .++.++.|
T Consensus 343 ~--~D-p--~y-IK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~------a~~cV~~L 410 (746)
T PTZ00429 343 Y--SD-P--PF-VKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV------APDCANLL 410 (746)
T ss_pred c--CC-c--HH-HHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH------HHHHHHHH
Confidence 2 22 1 12 011111111222357778888999999999999999999999999887665522 24445555
Q ss_pred HH
Q 000655 1317 VV 1318 (1370)
Q Consensus 1317 ~~ 1318 (1370)
..
T Consensus 411 l~ 412 (746)
T PTZ00429 411 LQ 412 (746)
T ss_pred HH
Confidence 55
No 29
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.64 E-value=0.33 Score=59.56 Aligned_cols=292 Identities=16% Similarity=0.176 Sum_probs=188.2
Q ss_pred chhHHHHHHHHhhhhcccccCcchHHHH---HHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-
Q 000655 1025 PKEVQTICLILTKSINRQQRFQREAAAA---ALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1100 (1370)
Q Consensus 1025 ~~~~~~i~~~L~~~L~s~~~~~Ri~a~a---f~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~- 1100 (1370)
-|+++.|++..+..|+++....|+-|+- .++-.|+.|.. ...+..+-++|.+.+....|.|-...|.++-.|-+.
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-TKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 4699999999999999999998988874 45555555644 344567788999999999999999999988877542
Q ss_pred ---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHh
Q 000655 1101 ---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1177 (1370)
Q Consensus 1101 ---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L 1177 (1370)
++..-...+||.+..-|..+...|+...+.-++.|-...++-.-..--..||.-|-..+-.-+-++|.+|..-||-+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 45555678899999999988999999999999999887665443345567888887788888999999999999999
Q ss_pred hccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh--hhhhhhccccCCcCCCCChHHHHHHHH
Q 000655 1178 SNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLT 1255 (1370)
Q Consensus 1178 ~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w--~l~~lf~~~~~~~~~~l~~~~f~~~i~ 1255 (1370)
++.. |++ ..|+.|+-.|+-++-.-+.-..-|...+|..-+. .+..+.... -..+-....+ .++.+|
T Consensus 758 s~ai-GPq---------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY-~TPe~nVQnG-vLkam~ 825 (975)
T COG5181 758 SRAI-GPQ---------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDY-ETPEANVQNG-VLKAMC 825 (975)
T ss_pred Hhhc-CHH---------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcc-cCchhHHHHh-HHHHHH
Confidence 9843 332 3566666666555544443333444444433332 223333221 0000000111 222222
Q ss_pred HHHHHhCcchHHHHHHHHHH----hhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhc----cCCChh
Q 000655 1256 RQFVQHFPSRIDSYMGSTIQ----AFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS----QSADAI 1327 (1370)
Q Consensus 1256 k~L~~~~~~~~~~~l~~~l~----y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll----~Dpdp~ 1327 (1370)
- +.+.-.+....|+-...+ .+-+-.+.-|+.|+-.|-.+.-+-+ ..+.|+..=.|.. |+ -||.|.
T Consensus 826 f-mFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~-----gtg~eda~IHLlN-llwpNIle~sPh 898 (975)
T COG5181 826 F-MFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP-----GTGDEDAAIHLLN-LLWPNILEPSPH 898 (975)
T ss_pred H-HHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC-----CcccHHHHHHHHH-HhhhhccCCCcH
Confidence 1 222222223333333332 4556677889999999987765433 1223444444444 33 388888
Q ss_pred hHHHHHHHH
Q 000655 1328 VRATCSSSL 1336 (1370)
Q Consensus 1328 VR~~Aa~aL 1336 (1370)
|...--+.+
T Consensus 899 vi~~~~Eg~ 907 (975)
T COG5181 899 VIQSFDEGM 907 (975)
T ss_pred HHHHHHHHH
Confidence 887655543
No 30
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.55 E-value=0.0013 Score=78.00 Aligned_cols=110 Identities=25% Similarity=0.296 Sum_probs=86.8
Q ss_pred HHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHH
Q 000655 1070 QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1149 (1370)
Q Consensus 1070 ~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~ 1149 (1370)
..+..+.+.+.|+++.||..+..-+|.++. +..++.+...+.|.+..|+..|..+|+++-.. .. .+.++
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---~a-~~~li 111 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-------EEAVPLLRELLSDEDPRVRDAAADALGELGDP---EA-VPPLV 111 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---hH-HHHHH
Confidence 356677788899999999999999999886 56788899999999999999999988887643 22 22222
Q ss_pred hHHhhhcCcCc-CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhH
Q 000655 1150 NLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSV 1211 (1370)
Q Consensus 1150 ~i~~~lrpffe-de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V 1211 (1370)
.+++ |++..||..|...+|.+.. . +.+.||+-.++|+...+
T Consensus 112 -------~~l~~d~~~~vR~~aa~aL~~~~~-----~---------~a~~~l~~~l~~~~~~~ 153 (335)
T COG1413 112 -------ELLENDENEGVRAAAARALGKLGD-----E---------RALDPLLEALQDEDSGS 153 (335)
T ss_pred -------HHHHcCCcHhHHHHHHHHHHhcCc-----h---------hhhHHHHHHhccchhhh
Confidence 3344 8999999999999999764 1 34788999999988555
No 31
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.059 Score=66.46 Aligned_cols=518 Identities=14% Similarity=0.137 Sum_probs=302.5
Q ss_pred HHHHHHHHccCCh----hHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHH
Q 000655 746 NRIVSSVCILLTK----DELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKH 821 (1370)
Q Consensus 746 ~~i~~~i~~~L~~----~el~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i~~~~ 821 (1370)
++|+...++.|.. .-+.-++-..++=...+++.-..-|..-+|+++-.+...+--. +..-++.++. +..-.++.
T Consensus 153 ~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~-iD~Fle~lFa-lanD~~~e 230 (885)
T KOG2023|consen 153 QKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH-IDKFLEILFA-LANDEDPE 230 (885)
T ss_pred HHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH-HHHHHHHHHH-HccCCCHH
Confidence 4677666666655 3333445555566677777777888888999998887777322 5666677766 66888999
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccC
Q 000655 822 LRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKG 901 (1370)
Q Consensus 822 ~r~~~l~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d~~l~~~vL~~LL~~L~~~p~~~e 901 (1370)
+|+.+=+|+..|..-++++++ .+| ..|+++.|.+-+ +
T Consensus 231 VRk~vC~alv~Llevr~dkl~-phl------------------------------------~~IveyML~~tq------d 267 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEVRPDKLV-PHL------------------------------------DNIVEYMLQRTQ------D 267 (885)
T ss_pred HHHHHHHHHHHHHHhcHHhcc-cch------------------------------------HHHHHHHHHHcc------C
Confidence 999999999999999988766 433 466777666411 1
Q ss_pred CCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccC----C-C---------
Q 000655 902 DMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGL----A-S--------- 967 (1370)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~----~-~--------- 967 (1370)
. .. -+++-|--....+-..+ ..+..+..+.++|.-.|+-.+-|.=.- . .
T Consensus 268 -~-------------dE-~VALEACEFwla~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 268 -V-------------DE-NVALEACEFWLALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred -c-------------ch-hHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 0 01 13444444444444445 899999999999999998888773211 1 0
Q ss_pred CCCCChHHHHHHHHHHHHHhhcchH-HHHHHHh---cCCCCChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccc
Q 000655 968 SGQHEPLRAILTSFQAFCECVGDLE-MRKILAR---DGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQ 1043 (1370)
Q Consensus 968 ~~~~~P~~~aleAlk~ll~~~g~~~-~~~~L~~---~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~ 1043 (1370)
.+.+.|- ..-.-..+.-.....++ .....+. .+.|+=...---.+..||... ....++.++-++-..|.+..
T Consensus 331 eeDIkPR-fhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf---~~elL~~l~PlLk~~L~~~~ 406 (885)
T KOG2023|consen 331 EEDIKPR-FHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF---GDELLPILLPLLKEHLSSEE 406 (885)
T ss_pred hhhccch-hhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhh---HHHHHHHHHHHHHHHcCcch
Confidence 0234441 11000000000000111 1111121 135871111112233456532 23345555656666666644
Q ss_pred cCcchHHH---HHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhh
Q 000655 1044 RFQREAAA---AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILAL 1116 (1370)
Q Consensus 1044 ~~~Ri~a~---af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~----~v~~~~~~lL~all~~ 1116 (1370)
=..|-+++ +.++|=-.. ..-..+ -.++-.|.+-+.|-.|.||.+..=-|+.-+.. .-.+|...+|..++..
T Consensus 407 W~vrEagvLAlGAIAEGcM~-g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ 484 (885)
T KOG2023|consen 407 WKVREAGVLALGAIAEGCMQ-GFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRR 484 (885)
T ss_pred hhhhhhhHHHHHHHHHHHhh-hcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHH
Confidence 44454444 444551110 111222 24678899999999999999998888866543 4457889999999999
Q ss_pred cccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc---CCChHHHHHHHHHHHHhhccCCCcchHHHHHHH
Q 000655 1117 LDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV---SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQI 1193 (1370)
Q Consensus 1117 L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe---de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv 1193 (1370)
+-|.+..|.-.|-.+++.+-+..+.+ +.+++-.|..++--.|. +.|--+=.-||..|.+-+. ..-.+....+-+
T Consensus 485 llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg--~~Ln~~~YiqiL 561 (885)
T KOG2023|consen 485 LLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVG--HALNKPAYIQIL 561 (885)
T ss_pred HhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHH--HhcCcHHHHHHh
Confidence 99999999999999999998877644 44566666666644444 3444555666666655332 222333333322
Q ss_pred HhhhhHHHHhccCCChhH----------HHH--------HHHHHHhhchhhhhhhhhhhccccCCcCC----CCChHHHH
Q 000655 1194 HAMLPRLILHIYDDDLSV----------RQA--------CRNTLKQVAPFMEIGVYGIFNSHCFNSDH----RSDYETFV 1251 (1370)
Q Consensus 1194 ~~~LvpLLlHL~D~~~~V----------~~a--------ck~tL~~~a~lL~w~l~~lf~~~~~~~~~----~l~~~~f~ 1251 (1370)
.--|+.-.--|.|+++++ ++| |..++.||..++.--+..+...+ ++.. .-+|-..-
T Consensus 562 mPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~--~~~~~~~pdkdfiI~s 639 (885)
T KOG2023|consen 562 MPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQ--QDPTVEAPDKDFIIVS 639 (885)
T ss_pred ccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhcc--CCccccCCCcceEEEe
Confidence 222222234567777654 333 56677777777663222222221 1111 11121222
Q ss_pred HHHHHHHHHhCcchHHHHHHHH------HHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCC
Q 000655 1252 RDLTRQFVQHFPSRIDSYMGST------IQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSAD 1325 (1370)
Q Consensus 1252 ~~i~k~L~~~~~~~~~~~l~~~------l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpd 1325 (1370)
.|+..-|++-.++.+..++.++ +.-++++-+++|++|--++|-+.+..++.-+. ..+..+..+.. .-||+
T Consensus 640 LDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p--~~~~fl~~lg~--Nl~~~ 715 (885)
T KOG2023|consen 640 LDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIP--NLADFLPILGA--NLNPE 715 (885)
T ss_pred HHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHhh--cCChh
Confidence 4566667777777777666553 44678999999999999999887766433322 22333433333 22333
Q ss_pred -hhhHHHHHHHHHHHH
Q 000655 1326 -AIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1326 -p~VR~~Aa~aL~~l~ 1340 (1370)
-+|.-.|..|+|.+.
T Consensus 716 ~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 716 NISVCNNAIWAIGEIA 731 (885)
T ss_pred hchHHHHHHHHHHHHH
Confidence 467778888888865
No 32
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.46 E-value=0.0057 Score=72.62 Aligned_cols=267 Identities=21% Similarity=0.192 Sum_probs=167.4
Q ss_pred HHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHH
Q 000655 1029 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1108 (1370)
Q Consensus 1029 ~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~ 1108 (1370)
+.....+...+.++....|..|+..+.++- .+..+..|.+.+.|+++.||..++.+||++.. +.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~---------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------~~ 105 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG---------SEEAVPLLRELLSDEDPRVRDAAADALGELGD-------PE 105 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc---------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------hh
Confidence 467777888888887777777776655431 14456688888999999999999999999986 45
Q ss_pred HHHHHHhhcc-cCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhh----cCcCcCCChHHHHHHHHHHHHhhccCCC
Q 000655 1109 VLSVILALLD-DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL----RNLQVSMNVKMRRNAFAAFGALSNFGVG 1183 (1370)
Q Consensus 1109 lL~all~~L~-d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~l----rpffede~~~vR~aAi~LfG~L~~~~~~ 1183 (1370)
.++.++..+. |.+..|+..|..+|+++-.. ..+.+++-.+.... -.-.++....+|.+|+..+|.+..
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~---~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---- 178 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDE---RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---- 178 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch---hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----
Confidence 5666777777 67889999999999998753 22222221110000 000011223789999999998764
Q ss_pred cchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCc
Q 000655 1184 SQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFP 1263 (1370)
Q Consensus 1184 ~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~ 1263 (1370)
. ....++.-++.|++..|+.++..+|+..+....+-...++.. .+++ . ...- ......|.....
T Consensus 179 -~---------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~--~~~~-~--~~vr-~~~~~~l~~~~~ 242 (335)
T COG1413 179 -P---------EAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKA--LSDE-S--LEVR-KAALLALGEIGD 242 (335)
T ss_pred -h---------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHH--hcCC-C--HHHH-HHHHHHhcccCc
Confidence 1 245677888999999999999999999887642311111111 1111 0 0111 122233333333
Q ss_pred chHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHc
Q 000655 1264 SRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1343 (1370)
Q Consensus 1264 ~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1343 (1370)
... ...-..++++....++..+....| ..+...-...+.. ...|.+..+|..++.+++......
T Consensus 243 ~~~---~~~l~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~ 306 (335)
T COG1413 243 EEA---VDALAKALEDEDVILALLAAAALG------------ALDLAEAALPLLL-LLIDEANAVRLEAALALGQIGQEK 306 (335)
T ss_pred chh---HHHHHHHHhccchHHHHHHHHHhc------------ccCchhhHHHHHH-HhhcchhhHHHHHHHHHHhhcccc
Confidence 322 233344677777777776665555 1111222333445 578899999999999988888666
Q ss_pred ccccccc
Q 000655 1344 NSHSWRS 1350 (1370)
Q Consensus 1344 ~~~~~~~ 1350 (1370)
...-|-.
T Consensus 307 ~~~a~~~ 313 (335)
T COG1413 307 AVAALLL 313 (335)
T ss_pred hHHHHHH
Confidence 6555543
No 33
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.024 Score=70.95 Aligned_cols=248 Identities=16% Similarity=0.134 Sum_probs=162.9
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhH
Q 000655 1072 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1151 (1370)
Q Consensus 1072 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i 1151 (1370)
++.+.+.|+|||+.+|..|||.|+.|-.. ...|.+|-|+-.+--|...-|+-.|..++-|+-. ++...-. . +
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~-q---L 181 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKD-Q---L 181 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHH-H---H
Confidence 78999999999999999999999988643 3356778888888887778899999999999754 3433322 3 3
Q ss_pred HhhhcCcCcCCChHHHHHHHHHHHHhhcc------------CCC-----cc-----------------h-----------
Q 000655 1152 SVRLRNLQVSMNVKMRRNAFAAFGALSNF------------GVG-----SQ-----------------R----------- 1186 (1370)
Q Consensus 1152 ~~~lrpffede~~~vR~aAi~LfG~L~~~------------~~~-----~~-----------------~----------- 1186 (1370)
..-|.-++.|-++.|=.+|..+|-.++.- |.. .| .
T Consensus 182 ~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~ 261 (968)
T KOG1060|consen 182 EEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLED 261 (968)
T ss_pred HHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcccccccccc
Confidence 34456778888888988888887765530 000 00 0
Q ss_pred --------------------HHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hh-hhhhccccCCcCCC
Q 000655 1187 --------------------EAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GV-YGIFNSHCFNSDHR 1244 (1370)
Q Consensus 1187 --------------------~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l-~~lf~~~~~~~~~~ 1244 (1370)
++=..-++++.-||+ +-.||+|+.||..++.++||..+. ++ +++++. +.+.+.
T Consensus 262 n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl---~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrL--Lrs~~~ 336 (968)
T KOG1060|consen 262 NGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL---QSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRL--LRSNRE 336 (968)
T ss_pred CcccccccccccccCCCcccCccHHHHHHhccHHH---hcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHH--HhcCCc
Confidence 000112445555554 467899999999999999998777 44 455442 222232
Q ss_pred CChHHHHHH------------------------------HHHHHH---HhCcchHHHHHHHHHHhhcCCChhHHHHHHHH
Q 000655 1245 SDYETFVRD------------------------------LTRQFV---QHFPSRIDSYMGSTIQAFEAPWPIIQANAIYF 1291 (1370)
Q Consensus 1245 l~~~~f~~~------------------------------i~k~L~---~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~f 1291 (1370)
..| ..+.. ++|.=+ --....+...+.....|.+|+...+=++|+.-
T Consensus 337 vqy-vvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~A 415 (968)
T KOG1060|consen 337 VQY-VVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKA 415 (968)
T ss_pred chh-hhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 222 11111 111100 11245566777787889999999888889999
Q ss_pred HhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1292 SSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1292 iG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
||-..+....- .+...+.|.. |++..|..|-+.|.-.+..|.
T Consensus 416 iGrCA~~~~sv------~~tCL~gLv~-Llsshde~Vv~eaV~vIk~Ll 457 (968)
T KOG1060|consen 416 IGRCASRIGSV------TDTCLNGLVQ-LLSSHDELVVAEAVVVIKRLL 457 (968)
T ss_pred HHHHHHhhCch------hhHHHHHHHH-HHhcccchhHHHHHHHHHHHH
Confidence 99776644311 1445677777 677777777776666655544
No 34
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.42 Score=60.27 Aligned_cols=467 Identities=16% Similarity=0.174 Sum_probs=243.6
Q ss_pred CChhHHHHHHHHHHHhccCCCh--hhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 000655 756 LTKDELVATLHSCTTAICDRTK--QSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCL 833 (1370)
Q Consensus 756 L~~~el~~~l~~ll~~L~d~~~--~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i~~~~~r~~~l~ai~~L 833 (1370)
+..+.+.+|+..+-+-|.|.+. ....+|+-.|+--+..+.++.. + . .+.-..++++-..+.+|..+++++..=
T Consensus 28 ~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k-~---~-~~qRWl~l~~e~reqVK~~il~tL~~~ 102 (859)
T KOG1241|consen 28 AQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERK-Q---Q-YQQRWLQLPAEIREQVKNNILRTLGSP 102 (859)
T ss_pred HHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHH-H---H-HHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 3344566777788788866543 4458888899988887766662 1 1 111222455555556666555554311
Q ss_pred hhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCC
Q 000655 834 AENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSA 913 (1370)
Q Consensus 834 a~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~ 913 (1370)
-...+..-- +.+.+.| +.-+|-. .| +.++..|.......++.
T Consensus 103 ep~~~s~Aa-q~va~IA------------~~ElP~n-~w----------p~li~~lv~nv~~~~~~-------------- 144 (859)
T KOG1241|consen 103 EPRRPSSAA-QCVAAIA------------CIELPQN-QW----------PELIVTLVSNVGEEQAS-------------- 144 (859)
T ss_pred CCCccchHH-HHHHHHH------------HhhCchh-hC----------HHHHHHHHHhcccccch--------------
Confidence 111111100 1111111 1123322 25 23333333322111111
Q ss_pred CCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchH-
Q 000655 914 DTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLE- 992 (1370)
Q Consensus 914 ~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~- 992 (1370)
.-+.. ++-|+.=+|| . ...+.+.+.+-.++.+. ++|.++.+.-+-.| +-|+++|..+-+...
T Consensus 145 ~~k~~---slealGyice---~---i~pevl~~~sN~iLtaI------v~gmrk~e~s~~vR--Laa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 145 MVKES---SLEALGYICE---D---IDPEVLEQQSNDILTAI------VQGMRKEETSAAVR--LAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHH---HHHHHHHHHc---c---CCHHHHHHHHhHHHHHH------HhhccccCCchhHH--HHHHHHHHHHHHHHHH
Confidence 00011 2233333333 2 22336667777776655 45666654333343 334555554433322
Q ss_pred ------HHHHHHh--cCCCC--ChhhHHHHHHHHHhHhhhcC---chhH-HHHHHHHhhhhcccccCcchHHHHHHHHhh
Q 000655 993 ------MRKILAR--DGEQN--DKEKWINLIGDVAGCVSIKR---PKEV-QTICLILTKSINRQQRFQREAAAAALSEFV 1058 (1370)
Q Consensus 993 ------~~~~L~~--~g~W~--~~e~~~~gV~lLAr~m~~~~---~~~~-~~i~~~L~~~L~s~~~~~Ri~a~af~sELl 1058 (1370)
..+++.. ...|. +.+--+-+.+=|.|-|.-|. .+.+ ++++..-+..++|+++..-+-|+-|-+-.
T Consensus 208 nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsti- 286 (859)
T KOG1241|consen 208 NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTI- 286 (859)
T ss_pred hhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-
Confidence 2222221 13466 33333444455566666543 3343 45888888888888888888787765532
Q ss_pred hcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCC----h---hHHHHHHHH
Q 000655 1059 RYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD----E---SVQLTAVSC 1131 (1370)
Q Consensus 1059 ~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d----~---~V~leAm~~ 1131 (1370)
|..+-.+....-..-..++. |.-...+ +.-.+-++|.+++.|...| + ++.+.|=.+
T Consensus 287 --ceEEiD~~~e~~e~~d~~~~---p~~~~fa------------~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~C 349 (859)
T KOG1241|consen 287 --CEEEIDLAIEYGEAVDQGLP---PSSKYFA------------RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVC 349 (859)
T ss_pred --HHHHHHHHHHHHHHhhcCCC---chhhHHH------------HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHH
Confidence 11110110000011111111 1111111 1122445555665554422 2 377888888
Q ss_pred HHHHhccCCcCCcchhHHhHHhhhcCcCc----CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCC
Q 000655 1132 LLTILKSSSKDAVEPILLNLSVRLRNLQV----SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD 1207 (1370)
Q Consensus 1132 L~~lL~~l~~~~~~~~l~~i~~~lrpffe----de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~ 1207 (1370)
|.-.-+..+++-+.+++ ||++ +++..-|.+|+-.||.+.. |++...++--|.+.++.++.-+.|+
T Consensus 350 L~l~A~~~~D~Iv~~Vl--------~Fiee~i~~pdwr~reaavmAFGSIl~---gp~~~~Lt~iV~qalp~ii~lm~D~ 418 (859)
T KOG1241|consen 350 LMLFAQCVGDDIVPHVL--------PFIEENIQNPDWRNREAAVMAFGSILE---GPEPDKLTPIVIQALPSIINLMSDP 418 (859)
T ss_pred HHHHHHHhcccchhhhH--------HHHHHhcCCcchhhhhHHHHHHHhhhc---CCchhhhhHHHhhhhHHHHHHhcCc
Confidence 88887777766555443 5554 7899999999999999987 6777778888888888988889999
Q ss_pred ChhHHHHHHHHHHhhchhhhh-hhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHH
Q 000655 1208 DLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQA 1286 (1370)
Q Consensus 1208 ~~~V~~ack~tL~~~a~lL~w-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~ 1286 (1370)
+--|+..+..||++++-++-- -.++. -.......++ .-++ ..|++=.
T Consensus 419 sl~VkdTaAwtlgrI~d~l~e~~~n~~----------------~l~~~l~~l~---------------~gL~-DePrva~ 466 (859)
T KOG1241|consen 419 SLWVKDTAAWTLGRIADFLPEAIINQE----------------LLQSKLSALL---------------EGLN-DEPRVAS 466 (859)
T ss_pred hhhhcchHHHHHHHHHhhchhhcccHh----------------hhhHHHHHHH---------------HHhh-hCchHHH
Confidence 999999999999999876543 11111 1011111111 1222 1344444
Q ss_pred HHHHHHhhhhccCc----hh---hhhhccHHHHHHHHHHHhcc--C-CChhhHHHHHHHHHHHHHHcc
Q 000655 1287 NAIYFSSSILCLCD----DQ---HILSLFYTQVFGLLVVKLSQ--S-ADAIVRATCSSSLGWLLKSIN 1344 (1370)
Q Consensus 1287 aA~~fiG~l~~~~~----~~---~~~~~~~e~l~~~L~~~Ll~--D-pdp~VR~~Aa~aL~~l~k~~~ 1344 (1370)
|+.|-.-.+..... .. ...+...+.+++.|.+ --. | .+...|..|=+||+.+.|.|-
T Consensus 467 N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~-~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 467 NVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLK-VTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHh-hccccccchhhHHHHHHHHHHHHHHcCc
Confidence 44443333332111 01 0011234666777666 332 3 568899999999999888764
No 35
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.39 E-value=0.77 Score=57.59 Aligned_cols=355 Identities=15% Similarity=0.193 Sum_probs=224.2
Q ss_pred ChHH-HHHHHHHHHHHhhcchHHHHHHHhc---CC------CC-ChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhc
Q 000655 972 EPLR-AILTSFQAFCECVGDLEMRKILARD---GE------QN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSIN 1040 (1370)
Q Consensus 972 ~P~~-~aleAlk~ll~~~g~~~~~~~L~~~---g~------W~-~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~ 1040 (1370)
.|.| .+.++....+.+.|-.++...+++. |- .. +..-...|.+.+..++-...-++++.|++..+..|+
T Consensus 730 e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLn 809 (1172)
T KOG0213|consen 730 EQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLN 809 (1172)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhc
Confidence 3455 4667777777777777776666642 21 11 222344667777777777667899999999999999
Q ss_pred ccccCcchHHHHHHHHh---hhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCc----chhhhhhHHHHHHHH
Q 000655 1041 RQQRFQREAAAAALSEF---VRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP----SIHIHQYATQVLSVI 1113 (1370)
Q Consensus 1041 s~~~~~Ri~a~af~sEL---l~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~----~~~v~~~~~~lL~al 1113 (1370)
++....|.-|+-.++.+ ++.|. ++.++..+-.+|.+.+....|.|-...|.++-.|- ..|+..-.+.+||.+
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~-ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrl 888 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCG-EEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRL 888 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhcc-HHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccc
Confidence 99999998887666654 44443 34566777889999999999999988887776553 336666678889999
Q ss_pred HhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHH
Q 000655 1114 LALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQI 1193 (1370)
Q Consensus 1114 l~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv 1193 (1370)
..-|....+.|+-..+.-++.|-..-.+-....--..||+-|--++-.-+-++|.+|..-||-+++.. |++
T Consensus 889 tPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI-GPq-------- 959 (1172)
T KOG0213|consen 889 TPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI-GPQ-------- 959 (1172)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc-CHH--------
Confidence 99998888999999999999999886654444556688888888888889999999999999999843 332
Q ss_pred HhhhhHHHHhccCCChhHHHHHHHHH----HhhchhhhhhhhhhhccccCCcCCCCChHH-HHHHHHHHHHHhCcchHHH
Q 000655 1194 HAMLPRLILHIYDDDLSVRQACRNTL----KQVAPFMEIGVYGIFNSHCFNSDHRSDYET-FVRDLTRQFVQHFPSRIDS 1268 (1370)
Q Consensus 1194 ~~~LvpLLlHL~D~~~~V~~ack~tL----~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~-f~~~i~k~L~~~~~~~~~~ 1268 (1370)
..|..|+=.|+=++-.-+.-.--|. .-|++|- .+.++.+.. .. ..++-.. .++.+ .+|.+.-.+..-.
T Consensus 960 -dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFt--VLPalmneY--rt-Pe~nVQnGVLkal-sf~Feyigemskd 1032 (1172)
T KOG0213|consen 960 -DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFT--VLPALMNEY--RT-PEANVQNGVLKAL-SFMFEYIGEMSKD 1032 (1172)
T ss_pred -HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchh--hhHHHHhhc--cC-chhHHHHhHHHHH-HHHHHHHHHHhhh
Confidence 3455666555444333222222222 2344442 223333221 00 0111101 22222 2333333444444
Q ss_pred HHHHHHH----hhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhcc----CCChhhHHHHHHHHH---
Q 000655 1269 YMGSTIQ----AFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ----SADAIVRATCSSSLG--- 1337 (1370)
Q Consensus 1269 ~l~~~l~----y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~----Dpdp~VR~~Aa~aL~--- 1337 (1370)
|+-...+ .+-+-...=|+.|+-.|-.+.-..+. .+.|+..-.|.. +.. |+.|.|...--+++.
T Consensus 1033 Yiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g-----~g~eda~iHLLN-~iWpNIle~sPhviqa~~e~~eg~r 1106 (1172)
T KOG0213|consen 1033 YIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG-----TGCEDALIHLLN-LIWPNILETSPHVIQAFDEAMEGLR 1106 (1172)
T ss_pred HHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC-----cCcHHHHHHHHH-HhhhhhcCCChHHHHHHHHHHHHHH
Confidence 5544444 44455677899999888877544321 122444444444 332 788888876555442
Q ss_pred ------HHHHHccccccc
Q 000655 1338 ------WLLKSINSHSWR 1349 (1370)
Q Consensus 1338 ------~l~k~~~~~~~~ 1349 (1370)
.+.+|++--.|-
T Consensus 1107 ~~Lg~~~~~~Y~~QGLFH 1124 (1172)
T KOG0213|consen 1107 VALGPQAMLKYCLQGLFH 1124 (1172)
T ss_pred HHhchHHHHHHHHHhccC
Confidence 344666555543
No 36
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.36 E-value=0.044 Score=66.74 Aligned_cols=351 Identities=14% Similarity=0.141 Sum_probs=215.8
Q ss_pred HHHHHHHHHHhhcchHHHHHHHhc----CCCCChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHH
Q 000655 977 ILTSFQAFCECVGDLEMRKILARD----GEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAA 1052 (1370)
Q Consensus 977 aleAlk~ll~~~g~~~~~~~L~~~----g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~a 1052 (1370)
+--|+-.+-...|-.++.-.++.- ..|+...|-+.-++.++--+-...-+|+.+++..+...|....-..|+.++-
T Consensus 301 t~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~ 380 (975)
T COG5181 301 TGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTAN 380 (975)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHh
Confidence 444666677778888888887752 3687666655555555544444455799999999999999999999999887
Q ss_pred HHHHhhhc--CCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcc----hhhhhhHHHHHHHHHhhcccCChh---
Q 000655 1053 ALSEFVRY--SGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----IHIHQYATQVLSVILALLDDLDES--- 1123 (1370)
Q Consensus 1053 f~sELl~~--~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~----~~v~~~~~~lL~all~~L~d~d~~--- 1123 (1370)
.++-+-.. |- .-...+.++.-|-++.+..-..+=..-|++.|.|-+ +-...+......-+...|+..|++
T Consensus 381 alS~lae~~~Py-gie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk 459 (975)
T COG5181 381 ALSYLAELVGPY-GIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKK 459 (975)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcch
Confidence 66655432 21 123345566667666666555666666777776531 101111111222222222222221
Q ss_pred ---------------------------------------------HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc
Q 000655 1124 ---------------------------------------------VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1158 (1370)
Q Consensus 1124 ---------------------------------------------V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf 1158 (1370)
++..+-.+|++-+.. ..+..++-..
T Consensus 460 ~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~----------~~v~~kil~~ 529 (975)
T COG5181 460 DLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD----------PRVSRKILEY 529 (975)
T ss_pred hHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC----------hHHHHHHHhh
Confidence 222333333333221 2455667788
Q ss_pred CcCCChHHHHHHHH----HHHHhhccCCCcc---------hHHHHHH-------------------------HHhhhhHH
Q 000655 1159 QVSMNVKMRRNAFA----AFGALSNFGVGSQ---------REAFLEQ-------------------------IHAMLPRL 1200 (1370)
Q Consensus 1159 fede~~~vR~aAi~----LfG~L~~~~~~~~---------~~~~~eQ-------------------------v~~~LvpL 1200 (1370)
|.||.+..|..+.. .||.|...+-+.. -.+|.|| .-..+-..
T Consensus 530 ~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivSti 609 (975)
T COG5181 530 YSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTI 609 (975)
T ss_pred ccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHH
Confidence 99999888887764 4666665332211 1345555 11122345
Q ss_pred HHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccc--cCCcCCCCChHHHH----HHHHHHHHHhC----cchHHHH
Q 000655 1201 ILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSH--CFNSDHRSDYETFV----RDLTRQFVQHF----PSRIDSY 1269 (1370)
Q Consensus 1201 LlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~~~--~~~~~~~l~~~~f~----~~i~k~L~~~~----~~~~~~~ 1269 (1370)
|-||+.+.|+|+..+..+...+++.|+. .=.+++.+. -+-+.-+=.|++.+ +.+|..-...- +--++..
T Consensus 610 L~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~i 689 (975)
T COG5181 610 LKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGI 689 (975)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhc
Confidence 7799999999999999999999998883 111111111 01111122355544 44444333222 2356777
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhcc-HHH--HHHHHHHHhccCCChhhHHHHHHHHHHHHHHc
Q 000655 1270 MGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF-YTQ--VFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1343 (1370)
Q Consensus 1270 l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~-~e~--l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1343 (1370)
+-+..+-+++-+..|-.+-+-|+|.+..+.+. .++ .|| ++=.|.+ +++.-.-.+|+.|.+++|++-|..
T Consensus 690 lP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe----yi~~rEWMRIcfeLvd-~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 690 LPSLTPILRNKHQKVVANTIALVGTICMNSPE----YIGVREWMRICFELVD-SLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cccccHhhhhhhHHHhhhHHHHHHHHHhcCcc----cCCHHHHHHHHHHHHH-HHHHhhHHHHHhhhhhhhhHHhhc
Confidence 77888899999999999999999999888773 122 244 4556888 788899999999999999987654
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.0038 Score=76.29 Aligned_cols=272 Identities=17% Similarity=0.143 Sum_probs=190.1
Q ss_pred HhhhhcccccCcchHHHHHHHHhhhcCCc-hhhHHHH-HHHHHHhhcCCCCh-hHHHHHhhhccCCcchhh----hhhHH
Q 000655 1035 LTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQ-MVEALCRHVSDESP-TVRGLCLRGLVQIPSIHI----HQYAT 1107 (1370)
Q Consensus 1035 L~~~L~s~~~~~Ri~a~af~sELl~~~~~-~~~l~~~-~i~~L~~~l~D~~~-~VR~lsLrGLgnl~~~~v----~~~~~ 1107 (1370)
++..+.|+++.-+--|++.+.-....+.. ...+++. ++..|+.-+..+.+ .+.+-+.-.|.|+-.+|. -.-..
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 77888899999999999999988775433 3344444 67778777777776 444455567777755421 12246
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchH
Q 000655 1108 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQRE 1187 (1370)
Q Consensus 1108 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~ 1187 (1370)
.+|+++...++..|+.|...|..+++-+.+...+..---+-..++-++-+++++....++..|.+..|.++. |.+
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt---G~d-- 311 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT---GSD-- 311 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee---ccH--
Confidence 789999999999999999999999999987655443223344567788889999999999999999999765 333
Q ss_pred HHHHH-HHhhhhHHHHhccC--CChhHHHHHHHHHHhhchhhhh--hhhhhhccccCCcCCCCChHHHHHHHHHHHHHhC
Q 000655 1188 AFLEQ-IHAMLPRLILHIYD--DDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF 1262 (1370)
Q Consensus 1188 ~~~eQ-v~~~LvpLLlHL~D--~~~~V~~ack~tL~~~a~lL~w--~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~ 1262 (1370)
...+. +-...+|-+.+|-- +...+++.|-+|+..++. |. .+.+++...
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~------------------------- 364 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDAN------------------------- 364 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcc-------------------------
Confidence 22233 22455565555544 333478877778777665 33 334443321
Q ss_pred cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000655 1263 PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1342 (1370)
Q Consensus 1263 ~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1342 (1370)
++-..+.-+++..-.+|..|+|-|+-+......++...+-..-++..|-. |+.=+|+.+-..+-.||+.+.|.
T Consensus 365 ------l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcd-lL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 365 ------LIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCD-LLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred ------cHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhh-cccCCChHHHHHHHHHHHHHHHH
Confidence 11122334555667899999999998877777666655533348888999 77778888888899999999876
Q ss_pred ccc
Q 000655 1343 INS 1345 (1370)
Q Consensus 1343 ~~~ 1345 (1370)
-..
T Consensus 438 ~e~ 440 (514)
T KOG0166|consen 438 GEA 440 (514)
T ss_pred HHH
Confidence 544
No 38
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.20 E-value=0.00069 Score=63.70 Aligned_cols=86 Identities=29% Similarity=0.371 Sum_probs=63.4
Q ss_pred HHHHhhc-CCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhH
Q 000655 1073 EALCRHV-SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1151 (1370)
Q Consensus 1073 ~~L~~~l-~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i 1151 (1370)
..|.+.+ +|+++.||.-+++.||++.. +.+++.+...+.|.+..|+..|..+|+++.. ...-+.+..+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----~~~~~~L~~~ 70 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD-------PEAIPALIELLKDEDPMVRRAAARALGRIGD----PEAIPALIKL 70 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----HHTHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----HHHHHHHHHH
Confidence 3566667 89999999999999998864 4668888888888888999999999998742 2233333332
Q ss_pred HhhhcCcCcCCChHHHHHHHHHHH
Q 000655 1152 SVRLRNLQVSMNVKMRRNAFAAFG 1175 (1370)
Q Consensus 1152 ~~~lrpffede~~~vR~aAi~LfG 1175 (1370)
+.++++..||.+|+..+|
T Consensus 71 ------l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 71 ------LQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HTC-SSHHHHHHHHHHHH
T ss_pred ------HcCCCcHHHHHHHHhhcC
Confidence 345566778999988776
No 39
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.19 E-value=0.0023 Score=71.62 Aligned_cols=179 Identities=23% Similarity=0.258 Sum_probs=112.2
Q ss_pred chHHHHHHHHhhhcC--Cc-hhhH---HHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhc
Q 000655 1047 REAAAAALSEFVRYS--GG-FDSL---LEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALL 1117 (1370)
Q Consensus 1047 Ri~a~af~sELl~~~--~~-~~~l---~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L 1117 (1370)
|+-|.--+-.++... .. ...+ ++.++..+...+.|.+..|-+.++.-++.++.+ .+..|...+++.++.-+
T Consensus 24 r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~ 103 (228)
T PF12348_consen 24 RVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKL 103 (228)
T ss_dssp HHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 666776677766654 11 1222 234557888899999999999999999988754 67888999999999999
Q ss_pred ccCChhHHHHHHHHHHHHhccCC-cCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCC--Cc--chHHHHHH
Q 000655 1118 DDLDESVQLTAVSCLLTILKSSS-KDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV--GS--QREAFLEQ 1192 (1370)
Q Consensus 1118 ~d~d~~V~leAm~~L~~lL~~l~-~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~--~~--~~~~~~eQ 1192 (1370)
.|....|.-.|..+|..+....+ ...+ + ...+.+...+.++.+|..+...+..+..... .. ......++
T Consensus 104 ~~~~~~i~~~a~~~L~~i~~~~~~~~~~---~---~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 177 (228)
T PF12348_consen 104 GDSKKFIREAANNALDAIIESCSYSPKI---L---LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQ 177 (228)
T ss_dssp G---HHHHHHHHHHHHHHHTTS-H--HH---H---HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCcHHHH---H---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHH
Confidence 99888899999999999998765 2221 1 2334567899999999999999999987433 11 11222233
Q ss_pred HHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhh
Q 000655 1193 IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIF 1234 (1370)
Q Consensus 1193 v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf 1234 (1370)
+.. .+.-.+.|.+++||++||.+|.......+-.-..++
T Consensus 178 l~~---~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 178 LVK---ALVKLLSDADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp HHH---HHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred HHH---HHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 333 344456899999999999999988665444334444
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.16 E-value=0.026 Score=70.85 Aligned_cols=281 Identities=19% Similarity=0.220 Sum_probs=179.8
Q ss_pred HHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHH-HHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhh
Q 000655 1029 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQY 1105 (1370)
Q Consensus 1029 ~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~-~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~~ 1105 (1370)
..++..++..+.+++..-...|+.++..+..++.....+. ...+..|.+-+..+|..+|.=++.-+.+++.+ ....+
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4677888888899999999999999999998765543332 22466777777777888888788878888643 33333
Q ss_pred HHH--HHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhH-HhHHhhhcCcCcCCChHHHHHHH------HHHHH
Q 000655 1106 ATQ--VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL-LNLSVRLRNLQVSMNVKMRRNAF------AAFGA 1176 (1370)
Q Consensus 1106 ~~~--lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l-~~i~~~lrpffede~~~vR~aAi------~LfG~ 1176 (1370)
... +++.++..|++.|--|.+.++..|+.+.. ...+..-+. ..+..+|-..+.+...+-|..++ ..||.
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~--~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAE--TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 333 89999999999777799999999999976 222222111 01222233333322222244444 45666
Q ss_pred hhccCCCcchHHHHHHHHhhhhHHHHhc-cCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHH
Q 000655 1177 LSNFGVGSQREAFLEQIHAMLPRLILHI-YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLT 1255 (1370)
Q Consensus 1177 L~~~~~~~~~~~~~eQv~~~LvpLLlHL-~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~ 1255 (1370)
++.+ ....+. +.+..++..++++ +..++.....+=.||+.+|... +| .
T Consensus 276 la~~----~~~~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~--------------~G------------~ 324 (503)
T PF10508_consen 276 LARV----SPQEVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV--------------EG------------K 324 (503)
T ss_pred HHhc----ChHHHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH--------------HH------------H
Confidence 6653 111222 2233444444554 5678888888888999877531 11 1
Q ss_pred HHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCch---hhhhhccHHH--------HHHHHHHHhccCC
Q 000655 1256 RQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD---QHILSLFYTQ--------VFGLLVVKLSQSA 1324 (1370)
Q Consensus 1256 k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~---~~~~~~~~e~--------l~~~L~~~Ll~Dp 1324 (1370)
..|..++++....++.....+.++...++|..|..-++.++...++ +....+...+ ....+.. +.+-|
T Consensus 325 ~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~-~~~qP 403 (503)
T PF10508_consen 325 QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMS-LLKQP 403 (503)
T ss_pred HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHH-HhcCC
Confidence 2234667778888888889999999999999998888888654432 2221111111 1115666 77889
Q ss_pred ChhhHHHHHHHHHHHHHHc
Q 000655 1325 DAIVRATCSSSLGWLLKSI 1343 (1370)
Q Consensus 1325 dp~VR~~Aa~aL~~l~k~~ 1343 (1370)
=|.+|+.|=.-|.-+..+-
T Consensus 404 F~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 404 FPELRCAAYRLLQALAAQP 422 (503)
T ss_pred chHHHHHHHHHHHHHhcCH
Confidence 9999998877666655443
No 41
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.14 E-value=0.00081 Score=57.86 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 000655 1282 PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWL 1339 (1370)
Q Consensus 1282 ~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1339 (1370)
+.+|.+|++.+|.+.+..+..... ....++..|.. +++|+++.||..|+.|||.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~-~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP--YLPELLPALIP-LLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH--HHHHHHHHHHH-HTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH--HHHHHHHHHHH-HHcCCCHHHHHHHHHHHhcC
Confidence 469999999999987777654432 45889999999 89999999999999999865
No 42
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.00 E-value=0.005 Score=57.80 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=61.9
Q ss_pred hHHHHhc-cCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHh
Q 000655 1198 PRLILHI-YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQA 1276 (1370)
Q Consensus 1198 vpLLlHL-~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y 1276 (1370)
.+|+-.| +|+++.|+..+-.+|+..+. ++. +...+..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------------------~~~-------------------~~~L~~~ 39 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD-----------------------PEA-------------------IPALIEL 39 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------------------HHH-------------------HHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------------------HhH-------------------HHHHHHH
Confidence 4566667 89999999988888874221 112 1222346
Q ss_pred hcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHH
Q 000655 1277 FEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1337 (1370)
Q Consensus 1277 ~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1337 (1370)
++++.+.||.+|+..+|.+. .+.....|..++.+|++..||..|.+|||
T Consensus 40 l~d~~~~vr~~a~~aL~~i~------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 40 LKDEDPMVRRAAARALGRIG------------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTSSSHHHHHHHHHHHHCCH------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 68999999999999999663 25566677775667788899999999986
No 43
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.92 E-value=0.038 Score=64.99 Aligned_cols=213 Identities=18% Similarity=0.122 Sum_probs=129.6
Q ss_pred HHHHHhhcccCChhHHHHHHHHHHHHhcc-CCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhc-cCCCcchH
Q 000655 1110 LSVILALLDDLDESVQLTAVSCLLTILKS-SSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN-FGVGSQRE 1187 (1370)
Q Consensus 1110 L~all~~L~d~d~~V~leAm~~L~~lL~~-l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~-~~~~~~~~ 1187 (1370)
|...++.+.++....+.+|+.++.+++.. .-.+.+..-...|+-.+...+.+.+.+=+..|..+.|-++= .|.|...+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 55566666666777777777777777732 22223333344555555555666666667888888888864 45466666
Q ss_pred HHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHH
Q 000655 1188 AFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRID 1267 (1370)
Q Consensus 1188 ~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~ 1267 (1370)
.+.+++...|.+.+. -....+.+|.+|-.||..|+-+-+-...++... -+-+..+|....-+-.+.
T Consensus 125 ei~~~~~~~L~~~l~-d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~-----------~~~le~if~~~~~~~~~~-- 190 (309)
T PF05004_consen 125 EIFEELKPVLKRILT-DSSASPKARAACLEALAICTFVGGSDEEETEEL-----------MESLESIFLLSILKSDGN-- 190 (309)
T ss_pred HHHHHHHHHHHHHHh-CCccchHHHHHHHHHHHHHHHhhcCChhHHHHH-----------HHHHHHHHHHHhcCcCCC--
Confidence 677776666666443 123345677899999998875422211111000 011111111111000000
Q ss_pred HHHHHHHHhhcC-CChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHcc
Q 000655 1268 SYMGSTIQAFEA-PWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1344 (1370)
Q Consensus 1268 ~~l~~~l~y~kS-~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1344 (1370)
.+...+ +.+.+..+|..--|+++-.++..... ...+..+..|.. |++.+|..||..|.+++.++++...
T Consensus 191 ------~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~-lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 191 ------APVVAAEDDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSE-LLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred ------cccccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 001111 34679999988889999988875554 224667888999 8889999999999999999998776
No 44
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.87 E-value=0.012 Score=75.65 Aligned_cols=246 Identities=17% Similarity=0.194 Sum_probs=166.2
Q ss_pred cchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhcccCChhH
Q 000655 1046 QREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESV 1124 (1370)
Q Consensus 1046 ~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~V 1124 (1370)
-|..|.+.|.....+... ..+-..+.....+--+|.+|.||..+.+-+|+++.. .-..-...+++-..+...|..+.|
T Consensus 214 sr~sacglf~~~~~~~~~-~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsV 292 (759)
T KOG0211|consen 214 SRLSACGLFGKLYVSLPD-DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSV 292 (759)
T ss_pred cchhhhhhhHHhccCCCh-HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhH
Confidence 488888888887665432 122233445555566999999999999999999864 223334566777777777777889
Q ss_pred HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhc
Q 000655 1125 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1204 (1370)
Q Consensus 1125 ~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL 1204 (1370)
+..|+.++..++..++..+ +.--.+...++.+.+|.+..+|......|-+|.+..+...-.. ....|...-+
T Consensus 293 r~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~------~~~~~~~~l~ 364 (759)
T KOG0211|consen 293 REAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRT------QLVPPVSNLL 364 (759)
T ss_pred HHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcc------cchhhHHHHh
Confidence 9999999999999988773 4444556667789999999999999999999887432211111 3556777778
Q ss_pred cCCChhHHHHHHHHHHhhchhhhh-hhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChh
Q 000655 1205 YDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPI 1283 (1370)
Q Consensus 1205 ~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~ 1283 (1370)
+|+..+|+.+...--...+.+++. ....+..+ .. +-....+.-++..+
T Consensus 365 ~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~--------------------~i-----------lp~~~~lv~d~~~~ 413 (759)
T KOG0211|consen 365 KDEEWEVRYAIAKKVQKLACYLNASCYPNIPDS--------------------SI-----------LPEVQVLVLDNALH 413 (759)
T ss_pred cchhhhhhHHhhcchHHHhhhcCcccccccchh--------------------hh-----------hHHHHHHHhcccch
Confidence 899888887654333333332221 11111111 00 22233456678899
Q ss_pred HHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHH
Q 000655 1284 IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1336 (1370)
Q Consensus 1284 IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1336 (1370)
+|.+.+.++..+.-..+.+. ..+.+...+.. +++|.+|.||-.-...+
T Consensus 414 vr~a~a~~~~~~~p~~~k~~----ti~~llp~~~~-~l~de~~~V~lnli~~l 461 (759)
T KOG0211|consen 414 VRSALASVITGLSPILPKER----TISELLPLLIG-NLKDEDPIVRLNLIDKL 461 (759)
T ss_pred HHHHHhccccccCccCCcCc----CccccChhhhh-hcchhhHHHHHhhHHHH
Confidence 99999988887766555222 23556667777 79999999998776554
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.85 E-value=0.021 Score=61.70 Aligned_cols=165 Identities=23% Similarity=0.228 Sum_probs=111.2
Q ss_pred cchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHH
Q 000655 1046 QREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQ 1125 (1370)
Q Consensus 1046 ~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~ 1125 (1370)
-|..++..++.|.... ..+.+..+..+...++|++|.||+-|+..|..+...+.-+...+++..++..+.|.|++|+
T Consensus 4 vR~n~i~~l~DL~~r~---~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRY---PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred HHHHHHHHHHHHHHhC---cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 4667777777776532 2456777889999999999999999999999998765555567777888899999999999
Q ss_pred HHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcC-----CChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHH
Q 000655 1126 LTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS-----MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRL 1200 (1370)
Q Consensus 1126 leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffed-----e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpL 1200 (1370)
--|-..+..+....++..+...++.+..++-..-++ .+.+-|. ..+.-+..+... +.-++++..-+..-
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~---~I~~fll~~i~~---d~~~~~l~~kl~~~ 154 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRK---KIYKFLLDFIDK---DKQKESLVEKLCQR 154 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHH---HHHHHHHHHcCc---HHHHHHHHHHHHHH
Confidence 999999999999887777888888877766554332 2222222 333333333221 22334444444444
Q ss_pred HHhcc-CCChhHHHHHHHHH
Q 000655 1201 ILHIY-DDDLSVRQACRNTL 1219 (1370)
Q Consensus 1201 LlHL~-D~~~~V~~ack~tL 1219 (1370)
+++-. ++++.|.+-+.+.|
T Consensus 155 ~~~~~~~~~~~~~~d~~~~l 174 (178)
T PF12717_consen 155 FLNAVVDEDERVLRDILYCL 174 (178)
T ss_pred HHHHcccccHHHHHHHHHHH
Confidence 44433 55555555554444
No 46
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.0069 Score=69.57 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=73.5
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCC
Q 000655 1161 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFN 1240 (1370)
Q Consensus 1161 de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~ 1240 (1370)
.+++++.+.|...+.+|++.... .+..+++- +.++-|.--+-|...+|...--.++...+ +.
T Consensus 345 ~dnEeiqchAvstLrnLAasse~-n~~~i~es--gAi~kl~eL~lD~pvsvqseisac~a~La---------------l~ 406 (550)
T KOG4224|consen 345 GDNEEIQCHAVSTLRNLAASSEH-NVSVIRES--GAIPKLIELLLDGPVSVQSEISACIAQLA---------------LN 406 (550)
T ss_pred CCchhhhhhHHHHHHHHhhhhhh-hhHHHhhc--CchHHHHHHHhcCChhHHHHHHHHHHHHH---------------hc
Confidence 56788999999999999984433 33344432 33333344445777777754333333322 11
Q ss_pred cCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCch--hhhhhc--cHHHHHHHH
Q 000655 1241 SDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD--QHILSL--FYTQVFGLL 1316 (1370)
Q Consensus 1241 ~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~--~~~~~~--~~e~l~~~L 1316 (1370)
|+.+. .|+ + .+. +.-.++++.|....+|.+|+--+|-+-...+. ..+... ..+.+.+.|
T Consensus 407 d~~k~---~ll-d---------~gi----~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L 469 (550)
T KOG4224|consen 407 DNDKE---ALL-D---------SGI----IPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRL 469 (550)
T ss_pred cccHH---HHh-h---------cCC----cceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHH
Confidence 11100 000 0 011 11124466666677777776555544333321 111111 124455556
Q ss_pred HHHhccCCChhhHHHHHHHHHHHH
Q 000655 1317 VVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1317 ~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
.+ .+...+..+|..|..|+-.|.
T Consensus 470 ~R-fl~S~~~tf~hia~wTI~qLl 492 (550)
T KOG4224|consen 470 AR-FLASHELTFRHIARWTIQQLL 492 (550)
T ss_pred HH-HHhhhHHHHHHHHHHHHHHHH
Confidence 66 566677777777777766655
No 47
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.74 E-value=0.14 Score=65.85 Aligned_cols=295 Identities=15% Similarity=0.148 Sum_probs=164.9
Q ss_pred HhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCc
Q 000655 1019 CVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP 1098 (1370)
Q Consensus 1019 ~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~ 1098 (1370)
-.++.+|.+..-.++.+.+-++++++.-|..|+-|++-+ ....++++++..+.+.+.|+++.||+-|+=+++++-
T Consensus 81 ~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 81 RYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 345667777777778888888888888888888777653 234667778888888888888888888888888775
Q ss_pred chhhhhhHHH-HHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc-CCChHHHHHHHHHHHH
Q 000655 1099 SIHIHQYATQ-VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGA 1176 (1370)
Q Consensus 1099 ~~~v~~~~~~-lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe-de~~~vR~aAi~LfG~ 1176 (1370)
.-+.+.+... ....+-..+.|.|..|+-.|+.+|..|=.. ....++..++.++-.+-- ......+..=...++.
T Consensus 156 ~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e----~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~ 231 (757)
T COG5096 156 RLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE----LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEV 231 (757)
T ss_pred hcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh----hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHH
Confidence 3322233333 455555666677778888888888777654 334455555554443321 1111124555556666
Q ss_pred hhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhcccc--CCcCCCCChHHHHHH
Q 000655 1177 LSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHC--FNSDHRSDYETFVRD 1253 (1370)
Q Consensus 1177 L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~~~~--~~~~~~l~~~~f~~~ 1253 (1370)
|.........++ ....-.+..|++-.|+.|...+-....++.+++.. .......... +-+....--..++..
T Consensus 232 L~~~~~~~~~s~-----~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~ 306 (757)
T COG5096 232 LTERVPTTPDSA-----EDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRR 306 (757)
T ss_pred HHccCCCCCCcH-----HHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHH
Confidence 665322211111 11222345677888999999999999999887765 3221111110 000000001234444
Q ss_pred HHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCc---hhhhhhccHHHHHHHHHHHhccC--CChhh
Q 000655 1254 LTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD---DQHILSLFYTQVFGLLVVKLSQS--ADAIV 1328 (1370)
Q Consensus 1254 i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~---~~~~~~~~~e~l~~~L~~~Ll~D--pdp~V 1328 (1370)
.-....+.++..++.-.....-.+++| +..+.-.+.+... .+.. .++...++. .-.+ .++.+
T Consensus 307 ~~~~~l~~~~k~~~~~~~~f~~~~~~~-------i~~~lek~~~~t~l~~~~n~-----~~~L~e~~~-y~~~~~~~~e~ 373 (757)
T COG5096 307 NIQIDLEVCSKLLDKVKKLFLIEYNDD-------IYIKLEKLDQLTRLADDQNL-----SQILLELIY-YIAENHIDAEM 373 (757)
T ss_pred hhHHHHHhhHHHHHHHhhhhhhhccch-------HHHHHHHHHHHhhcCCchhh-----HHHHHHHHH-HHhhccccHHH
Confidence 455555555555555444433333333 3333333322211 1221 113333333 2345 77777
Q ss_pred HHHHHHHHHHHH
Q 000655 1329 RATCSSSLGWLL 1340 (1370)
Q Consensus 1329 R~~Aa~aL~~l~ 1340 (1370)
-..|-++||.+.
T Consensus 374 v~~~ik~lgd~~ 385 (757)
T COG5096 374 VSEAIKALGDLA 385 (757)
T ss_pred HHHHHHHHHhhh
Confidence 777777777766
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.50 E-value=0.0044 Score=53.29 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=46.9
Q ss_pred hhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHH
Q 000655 1084 PTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTI 1135 (1370)
Q Consensus 1084 ~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~l 1135 (1370)
|.||.-|+.+||+++.. ....|.+.+++.++..|.|.++.|+..|..+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57999999999998743 67889999999999999999999999999999875
No 49
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.49 E-value=0.15 Score=59.74 Aligned_cols=132 Identities=24% Similarity=0.254 Sum_probs=87.5
Q ss_pred HHHHHHHHHH-hhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcc
Q 000655 1067 LLEQMVEALC-RHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE 1145 (1370)
Q Consensus 1067 l~~~~i~~L~-~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~ 1145 (1370)
.++.+++.|. -+++.+++.||..+++.||-...-.. +....-++-++..+...++.|...|++++-+++-.=+...+.
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3445554444 68899999999999998885542110 122333444555554457889999999999997654433322
Q ss_pred hh--------HHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHh
Q 000655 1146 PI--------LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH 1203 (1370)
Q Consensus 1146 ~~--------l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlH 1203 (1370)
.. ...+..-+..+++++++++|+.|.+-|.+|.-.+.-.. ...++..|+-+.++
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~ 163 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFN 163 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcC
Confidence 22 23566667788999999999999999999987544333 34455555555443
No 50
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.19 Score=63.56 Aligned_cols=297 Identities=15% Similarity=0.163 Sum_probs=182.5
Q ss_pred cCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh
Q 000655 1023 KRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI 1102 (1370)
Q Consensus 1023 ~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v 1102 (1370)
+.+-|+-.| .-+++..|+.=..+-++-...+=||... +.++-=+.|.|.+-|+.+|..|-.+||-.||+|...++
T Consensus 65 GypahFGqi--eclKLias~~f~dKRiGYLaamLlLdE~---qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~Em 139 (866)
T KOG1062|consen 65 GYPAHFGQI--ECLKLIASDNFLDKRIGYLAAMLLLDER---QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEM 139 (866)
T ss_pred CCCccchhh--HHHHHhcCCCchHHHHHHHHHHHHhccc---hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHH
Confidence 344444443 1245556665555444333333344322 22222257899999999999999999999999998654
Q ss_pred hhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCC
Q 000655 1103 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1182 (1370)
Q Consensus 1103 ~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1182 (1370)
.+.+.|-+-..+...++-|+-.|+.++-++.....+. ++ .+...-|.+.-+-+..|=.++..+.-++++...
T Consensus 140 ---ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l-~e----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 140 ---ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL-VE----HFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred ---hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH-HH----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 2344555555666678899999999999999875421 22 233344566667778888889999888887432
Q ss_pred CcchHHHHHHHHhhhhHHHHhccCC----ChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHH
Q 000655 1183 GSQREAFLEQIHAMLPRLILHIYDD----DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQF 1258 (1370)
Q Consensus 1183 ~~~~~~~~eQv~~~LvpLLlHL~D~----~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L 1258 (1370)
..-..|++ +...+|..|-.+.-. +-+|. +.++|||+.++-.++.- ++.+ ..++.+.++|+....
T Consensus 212 -~~l~~fr~-l~~~lV~iLk~l~~~~yspeydv~-------gi~dPFLQi~iLrlLri--LGq~-d~daSd~M~DiLaqv 279 (866)
T KOG1062|consen 212 -DALSYFRD-LVPSLVKILKQLTNSGYSPEYDVH-------GISDPFLQIRILRLLRI--LGQN-DADASDLMNDILAQV 279 (866)
T ss_pred -HHHHHHHH-HHHHHHHHHHHHhcCCCCCccCcc-------CCCchHHHHHHHHHHHH--hcCC-CccHHHHHHHHHHHH
Confidence 23344555 344455444433322 22344 36789999854444332 2322 234566777776666
Q ss_pred HH---hCcchHHHHHHHHHH--hhcCCChhHHHHHHHHHhhhhccCchhhhhhc-----------cHHHHH---HHHHHH
Q 000655 1259 VQ---HFPSRIDSYMGSTIQ--AFEAPWPIIQANAIYFSSSILCLCDDQHILSL-----------FYTQVF---GLLVVK 1319 (1370)
Q Consensus 1259 ~~---~~~~~~~~~l~~~l~--y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~-----------~~e~l~---~~L~~~ 1319 (1370)
.. ...+.-+-.+-+|+. |-=.|.+.+|-.|+-.+|-++.+-+...+ ++ |..-+. .+..+
T Consensus 280 atntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Nir-YvaLn~L~r~V~~d~~avqrHr~tIle- 357 (866)
T KOG1062|consen 280 ATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIR-YVALNMLLRVVQQDPTAVQRHRSTILE- 357 (866)
T ss_pred HhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcccee-eeehhhHHhhhcCCcHHHHHHHHHHHH-
Confidence 53 223334444555554 33345677999999999977665442221 11 212222 23556
Q ss_pred hccCCChhhHHHHHHHHHHHHHHcccc
Q 000655 1320 LSQSADAIVRATCSSSLGWLLKSINSH 1346 (1370)
Q Consensus 1320 Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1346 (1370)
-++|||+++|++|-+=++.+.+.+|..
T Consensus 358 CL~DpD~SIkrralELs~~lvn~~Nv~ 384 (866)
T KOG1062|consen 358 CLKDPDVSIKRRALELSYALVNESNVR 384 (866)
T ss_pred HhcCCcHHHHHHHHHHHHHHhccccHH
Confidence 689999999999999988888877764
No 51
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=0.24 Score=61.77 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=112.0
Q ss_pred hHHHHHHHHhhhhcccccCcchHHH-HHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hh-
Q 000655 1027 EVQTICLILTKSINRQQRFQREAAA-AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HI- 1102 (1370)
Q Consensus 1027 ~~~~i~~~L~~~L~s~~~~~Ri~a~-af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v- 1102 (1370)
++-.++++.++.-+++.-..|+... +-|.+-+........++..++.++.++..-++..||.-+++=|.-+... .+
T Consensus 41 eflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eid 120 (892)
T KOG2025|consen 41 EFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEID 120 (892)
T ss_pred HHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccC
Confidence 5666677777777777777776653 2233333333344568888999999999999999999998866544321 11
Q ss_pred hhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcC--CcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhcc
Q 000655 1103 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--AVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1180 (1370)
Q Consensus 1103 ~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~--~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~ 1180 (1370)
.-....+..+++.-+.|....|+.+|+.+|+++=+.-.+. .+...+..+ ...|.+++||.+|..-..-
T Consensus 121 d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~l------iqnDpS~EVRRaaLsnI~v---- 190 (892)
T KOG2025|consen 121 DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDL------IQNDPSDEVRRAALSNISV---- 190 (892)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHH------HhcCCcHHHHHHHHHhhcc----
Confidence 1234678899999999999999999999999987432222 345555554 3489999999998754322
Q ss_pred CCCcchHHHHHHHHhhhhHHHHhccCCChhHHH
Q 000655 1181 GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQ 1213 (1370)
Q Consensus 1181 ~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ 1213 (1370)
.. +.++..+-.-.|.+..+|+
T Consensus 191 --dn----------sTlp~IveRarDV~~anRr 211 (892)
T KOG2025|consen 191 --DN----------STLPCIVERARDVSGANRR 211 (892)
T ss_pred --Cc----------ccchhHHHHhhhhhHHHHH
Confidence 11 2455566666677666654
No 52
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.22 E-value=0.021 Score=61.68 Aligned_cols=113 Identities=21% Similarity=0.178 Sum_probs=85.0
Q ss_pred ChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcch-hHHhHHhhhcCcCcC
Q 000655 1083 SPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEP-ILLNLSVRLRNLQVS 1161 (1370)
Q Consensus 1083 ~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~-~l~~i~~~lrpffed 1161 (1370)
+|.||.-++.++|.+.... .......++.+...|.|.+..|+..|+..|++++.. +--.+.. ++..++. ...|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~----~l~D 74 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILK----LLVD 74 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHH----HHcC
Confidence 6899999999999887531 123455578889999999999999999999999865 2222332 2244443 4599
Q ss_pred CChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCC
Q 000655 1162 MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDD 1208 (1370)
Q Consensus 1162 e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~ 1208 (1370)
++++||..|-..|..+.... .. +-+.+.++.++.||.+..
T Consensus 75 ~~~~Ir~~A~~~~~e~~~~~---~~----~~i~~~~~e~i~~l~~~~ 114 (178)
T PF12717_consen 75 ENPEIRSLARSFFSELLKKR---NP----NIIYNNFPELISSLNNCY 114 (178)
T ss_pred CCHHHHHHHHHHHHHHHHhc---cc----hHHHHHHHHHHHHHhCcc
Confidence 99999999999999999721 12 234788999999999863
No 53
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.56 Score=58.81 Aligned_cols=167 Identities=14% Similarity=0.211 Sum_probs=111.2
Q ss_pred ChhhHHHHHHHHHhHhhh-cCchhHHHHHHHHhhhhcccccCcchHHHH-HHHHhhhcCCchhhHHHHHHHHHHhhcCCC
Q 000655 1005 DKEKWINLIGDVAGCVSI-KRPKEVQTICLILTKSINRQQRFQREAAAA-ALSEFVRYSGGFDSLLEQMVEALCRHVSDE 1082 (1370)
Q Consensus 1005 ~~e~~~~gV~lLAr~m~~-~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~a-f~sELl~~~~~~~~l~~~~i~~L~~~l~D~ 1082 (1370)
+..-|.-||.+ .+++. -.|..-+.+..-+..+|++.-.--|.-|+. .|-=|+++|.. ++..+..|.+.+.||
T Consensus 120 S~n~ye~giAL--~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA----lr~~FprL~EkLeDp 193 (877)
T KOG1059|consen 120 SSNVYEVGLAL--SGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA----LRPCFPRLVEKLEDP 193 (877)
T ss_pred cCccchhhhee--cccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh----HhhhHHHHHHhccCC
Confidence 55666677755 33333 356677788888888888887777766664 44457777743 456677899999999
Q ss_pred ChhHHHHHhhhccCCcch--------------------------hh-----------hhhHHHHHHHHHhhcccCCh-hH
Q 000655 1083 SPTVRGLCLRGLVQIPSI--------------------------HI-----------HQYATQVLSVILALLDDLDE-SV 1124 (1370)
Q Consensus 1083 ~~~VR~lsLrGLgnl~~~--------------------------~v-----------~~~~~~lL~all~~L~d~d~-~V 1124 (1370)
+|.|...|+--+-.++.. |+ .++.+-+++.+.+.+..+.. .+
T Consensus 194 Dp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSL 273 (877)
T KOG1059|consen 194 DPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSL 273 (877)
T ss_pred CchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHH
Confidence 999998887744433210 11 23456667777777755442 46
Q ss_pred HHHHHHHHHHH--hccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhc
Q 000655 1125 QLTAVSCLLTI--LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1179 (1370)
Q Consensus 1125 ~leAm~~L~~l--L~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1179 (1370)
..|.+++.-.. +..++ ++..++.+- +.+||-|++|.++.+|.-+.-+||.+++
T Consensus 274 lYECvNTVVa~s~s~g~~-d~~asiqLC-vqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 274 LYECVNTVVAVSMSSGMS-DHSASIQLC-VQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred HHHHHHHheeehhccCCC-CcHHHHHHH-HHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 67777666544 11111 223333322 3679999999999999999999999998
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.16 E-value=0.014 Score=56.63 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhcc
Q 000655 1126 LTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY 1205 (1370)
Q Consensus 1126 leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~ 1205 (1370)
..+|-+|+.+--.++.. +..++-.|..-+-.+|+|++..||.+|.+.++++++..++. .-...++|+..|..++ .
T Consensus 4 ~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~kl~---~ 78 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALCKLS---A 78 (97)
T ss_pred hHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---c
Confidence 45666777766665544 67777777777889999999999999999999999865432 2334566666666654 6
Q ss_pred CCChhHHHHHH
Q 000655 1206 DDDLSVRQACR 1216 (1370)
Q Consensus 1206 D~~~~V~~ack 1216 (1370)
|++++|+.+|.
T Consensus 79 D~d~~Vr~~a~ 89 (97)
T PF12755_consen 79 DPDENVRSAAE 89 (97)
T ss_pred CCchhHHHHHH
Confidence 99999999884
No 55
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.13 E-value=0.16 Score=65.03 Aligned_cols=207 Identities=19% Similarity=0.178 Sum_probs=119.8
Q ss_pred HHHHHHhhcchHHHHHHHhcCCCC--ChhhHHHHHHHHHhHhhh-cCchhHHHHHHHHhhhhcccccC----cchHHHHH
Q 000655 981 FQAFCECVGDLEMRKILARDGEQN--DKEKWINLIGDVAGCVSI-KRPKEVQTICLILTKSINRQQRF----QREAAAAA 1053 (1370)
Q Consensus 981 lk~ll~~~g~~~~~~~L~~~g~W~--~~e~~~~gV~lLAr~m~~-~~~~~~~~i~~~L~~~L~s~~~~----~Ri~a~af 1053 (1370)
|.-.+..+|....+..|.. |- ..-+-.+...+++..+.. .+| -+.++..+.++++++... -|.+|+..
T Consensus 346 ~~Dal~~~GT~~a~~~i~~---~i~~~~~~~~ea~~~~~~~~~~~~~P--t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~ 420 (574)
T smart00638 346 FLDAVAQAGTPPALKFIKQ---WIKNKKITPLEAAQLLAVLPHTARYP--TEEILKALFELAESPEVQKQPYLRESALLA 420 (574)
T ss_pred HHHHHHhcCCHHHHHHHHH---HHHcCCCCHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHhcCccccccHHHHHHHHHH
Confidence 3333456677666666553 21 111222344444443322 122 456667777777665433 36788888
Q ss_pred HHHhhhc-CCch--------hhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcc---cCC
Q 000655 1054 LSEFVRY-SGGF--------DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLD---DLD 1121 (1370)
Q Consensus 1054 ~sELl~~-~~~~--------~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~---d~d 1121 (1370)
|+.+++. |... ..+.+.+...|.+..++.+...+.+.||||||++... .+..+..-+. +..
T Consensus 421 ~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~-------~i~~l~~~l~~~~~~~ 493 (574)
T smart00638 421 YGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS-------SIKVLEPYLEGAEPLS 493 (574)
T ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh-------HHHHHHHhcCCCCCCC
Confidence 8888883 3221 3455666777777777778888999999999999743 2333333333 233
Q ss_pred hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc-CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHH
Q 000655 1122 ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRL 1200 (1370)
Q Consensus 1122 ~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe-de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpL 1200 (1370)
..++..|+.+|+++...- ...+...++.| |++ .|..+||.+|+.++=.-- -...+.++ +.-.
T Consensus 494 ~~iR~~Av~Alr~~a~~~-p~~v~~~l~~i------~~n~~e~~EvRiaA~~~lm~t~------P~~~~l~~----ia~~ 556 (574)
T smart00638 494 TFIRLAAILALRNLAKRD-PRKVQEVLLPI------YLNRAEPPEVRMAAVLVLMETK------PSVALLQR----IAEL 556 (574)
T ss_pred HHHHHHHHHHHHHHHHhC-chHHHHHHHHH------HcCCCCChHHHHHHHHHHHhcC------CCHHHHHH----HHHH
Confidence 468999999999876543 34455666555 333 577889999887764421 12222233 2322
Q ss_pred HHhccCCChhHHHHHHHH
Q 000655 1201 ILHIYDDDLSVRQACRNT 1218 (1370)
Q Consensus 1201 LlHL~D~~~~V~~ack~t 1218 (1370)
+-+ |++.+|+.....+
T Consensus 557 l~~--E~~~QV~sfv~S~ 572 (574)
T smart00638 557 LNK--EPNLQVASFVYSH 572 (574)
T ss_pred Hhh--cCcHHHHHHhHHh
Confidence 222 7778887655443
No 56
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.90 E-value=0.011 Score=57.46 Aligned_cols=90 Identities=24% Similarity=0.312 Sum_probs=73.0
Q ss_pred HHHHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCC
Q 000655 1086 VRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM 1162 (1370)
Q Consensus 1086 VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede 1162 (1370)
.|+-++-||+.++.. .+.+|.+.+++.++.++.|.|.+|++-|-.+|-+|.......- -+.+.+|-..+...+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 366777788876543 6889999999999999999999999999999999987765443 346778888888899999
Q ss_pred ChHHHHHHHHHHHHh
Q 000655 1163 NVKMRRNAFAAFGAL 1177 (1370)
Q Consensus 1163 ~~~vR~aAi~LfG~L 1177 (1370)
++.||.+| .++-.|
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99999998 444443
No 57
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.89 E-value=0.0095 Score=58.69 Aligned_cols=106 Identities=24% Similarity=0.234 Sum_probs=77.6
Q ss_pred HHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhH-HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcch
Q 000655 1071 MVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYA-TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEP 1146 (1370)
Q Consensus 1071 ~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~-~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~ 1146 (1370)
++..|.+-+.|+++.+|.-++..|++++.. ...... ..+++.++..|.+.+..++..|+.+|+++...-.. ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~--~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED--NKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH--HHH
Confidence 455667777889999999999999999853 222222 37788999999998999999999999999865321 111
Q ss_pred hHH--hHHhhhcCcCcCCChHHHHHHHHHHHHhh
Q 000655 1147 ILL--NLSVRLRNLQVSMNVKMRRNAFAAFGALS 1178 (1370)
Q Consensus 1147 ~l~--~i~~~lrpffede~~~vR~aAi~LfG~L~ 1178 (1370)
... .+...+-.++++.+..+|..|..+++.++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 111 12334445667778999999999999875
No 58
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.85 E-value=7.1 Score=48.27 Aligned_cols=509 Identities=14% Similarity=0.130 Sum_probs=257.4
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHH--hhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchh
Q 000655 764 TLHSCTTAICDRTKQSAEGAIQAVVEFV--TKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKI 841 (1370)
Q Consensus 764 ~l~~ll~~L~d~~~~~~~~A~~~L~~~l--~~rg~~L~e~dV~~I~~~I~~~L~~i~~~~~r~~~l~ai~~La~~h~~~v 841 (1370)
+...+.++++.. +-+++.|-.+|+-++ -..|.-+.|+++-++.=+|.+-.+ -.++..|+.+--||--|..-. +.|
T Consensus 23 ~~qd~~~sfn~S-pvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQ-hkd~~Lrq~VY~aIkelS~~t-edv 99 (898)
T COG5240 23 LLQDMNESFNKS-PVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQ-HKDLYLRQCVYSAIKELSKLT-EDV 99 (898)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHhhcc-hhh
Confidence 344455555443 233344444454443 223444446656666666655333 355667777777776665543 222
Q ss_pred HHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCC-ccCCCCCCCCCCCccch
Q 000655 842 VFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDM-EKGDYSSHSADTWIDDD 920 (1370)
Q Consensus 842 V~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d~~l~~~vL~~LL~~L~~~p~~~e~~-~~~~~~~~~~~~~~~~~ 920 (1370)
+. |--...||+.- ..| ...-+..+..|..++.....|.-.. -+.++-+.. . -
T Consensus 100 lm-------~tssiMkD~~~---g~~-----------~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~-----~-a 152 (898)
T COG5240 100 LM-------GTSSIMKDLNG---GVP-----------DDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTS-----M-A 152 (898)
T ss_pred hH-------HHHHHHHhhcc---CCc-----------cccccHHHHHHHHhcCcchhhhHHHHhhhhccccc-----h-h
Confidence 21 00112233322 222 1222233334444444443332100 000111110 0 1
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHH--HHHhhhcccCCC-CCCCChHHHHHHHHHHHHHhhcc---hHHH
Q 000655 921 ILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAAL--TLQLGSCHGLAS-SGQHEPLRAILTSFQAFCECVGD---LEMR 994 (1370)
Q Consensus 921 ~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aL--L~ql~~~~~~~~-~~~~~P~~~aleAlk~ll~~~g~---~~~~ 994 (1370)
+.-||.+.-|.++... ...++++--+.=-|. +.|.-.-+|-.. ...-+|.+ -..|+ +||-+..- ..+.
T Consensus 153 ~~saalv~aYhLlp~~----~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~is-qYHal-GlLyq~kr~dkma~l 226 (898)
T COG5240 153 RRSAALVVAYHLLPNN----FNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPIS-QYHAL-GLLYQSKRTDKMAQL 226 (898)
T ss_pred hhhhHHHHhhhhcccc----HHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHH-HHHHH-HHHHHHhcccHHHHH
Confidence 2348888889999875 233333332222221 223222222110 01234542 22233 33333333 2222
Q ss_pred HHHHhcCC---CCChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHH
Q 000655 995 KILARDGE---QNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQM 1071 (1370)
Q Consensus 995 ~~L~~~g~---W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~ 1071 (1370)
+.++.-.+ ..+...+..+|......| ..+++..-.+..+|...|++..+...+-++-..+.|--.. ....+.++.
T Consensus 227 klv~hf~~n~smknq~a~V~lvr~~~~ll-~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~~~ 304 (898)
T COG5240 227 KLVEHFRGNASMKNQLAGVLLVRATVELL-KENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVDQT 304 (898)
T ss_pred HHHHHhhcccccccchhheehHHHHHHHH-HhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHHHH
Confidence 33332111 224455566665544444 2344444455555555566666666555443333332222 334566888
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcc---hhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhH
Q 000655 1072 VEALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1148 (1370)
Q Consensus 1072 i~~L~~~l~D~~~~VR~lsLrGLgnl~~---~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l 1148 (1370)
+..|..-++.++...|-.|+|-|..++. +++.---+. ++ +...|.+..|..=|+.+|-+-.. ++.+.
T Consensus 305 vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e-vE---sLIsd~Nr~IstyAITtLLKTGt---~e~id--- 374 (898)
T COG5240 305 VSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE-VE---SLISDENRTISTYAITTLLKTGT---EETID--- 374 (898)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh-HH---HHhhcccccchHHHHHHHHHcCc---hhhHH---
Confidence 9999999999999999999999998874 233111111 22 22334566787777777666443 33343
Q ss_pred HhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhh-h
Q 000655 1149 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM-E 1227 (1370)
Q Consensus 1149 ~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL-~ 1227 (1370)
++...|..|.-|.++....-+|.....|+-.-..++ .. ++..|...|+. ...-.-.++.-.|+-..-.+- .
T Consensus 375 -rLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~-~s----~l~FL~~~L~~--eGg~eFK~~~Vdaisd~~~~~p~ 446 (898)
T COG5240 375 -RLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK-LS----YLDFLGSSLLQ--EGGLEFKKYMVDAISDAMENDPD 446 (898)
T ss_pred -HHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH-HH----HHHHHHHHHHh--cccchHHHHHHHHHHHHHhhCch
Confidence 455567789999999999888888888875222211 11 22333333332 223333444444443333222 1
Q ss_pred h--hhhhhhccccCCcCCCCChHHHHHHHHHHHHHh-----CcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCc
Q 000655 1228 I--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH-----FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1300 (1370)
Q Consensus 1228 w--~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~-----~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~ 1300 (1370)
. ..-+.++.. .+| -.|.+..-+|...|.++ .|+++-.++-+-+.. ....||.+|+.-+..+.-+..
T Consensus 447 skEraLe~LC~f-IED---cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL---EN~ivRsaAv~aLskf~ln~~ 519 (898)
T COG5240 447 SKERALEVLCTF-IED---CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLIL---ENNIVRSAAVQALSKFALNIS 519 (898)
T ss_pred HHHHHHHHHHHH-Hhh---cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH---hhhHHHHHHHHHHHHhccCcc
Confidence 1 112222322 222 23556666666666654 345555554443332 356799999987765554443
Q ss_pred hhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1301 DQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1301 ~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
+- ...+.+..+|.+ -+.|.|-.||.+|+-+|..+.
T Consensus 520 d~----~~~~sv~~~lkR-clnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 520 DV----VSPQSVENALKR-CLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cc----ccHHHHHHHHHH-HhhcccHHHHHHHHHHHHhhh
Confidence 22 234678888999 899999999999999998876
No 59
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.77 E-value=0.012 Score=44.50 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=25.1
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHHc
Q 000655 1313 FGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1343 (1370)
Q Consensus 1313 ~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1343 (1370)
+..+.. +++||+|.||..|+++||.+.+.+
T Consensus 2 lp~l~~-~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQ-LLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHH-HHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHhhC
Confidence 456777 899999999999999999998753
No 60
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=1.4 Score=54.21 Aligned_cols=332 Identities=14% Similarity=0.124 Sum_probs=206.5
Q ss_pred HHHHHHHhhcchHHHHHHHh-cCCCC------ChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHH
Q 000655 980 SFQAFCECVGDLEMRKILAR-DGEQN------DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAA 1052 (1370)
Q Consensus 980 Alk~ll~~~g~~~~~~~L~~-~g~W~------~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~a 1052 (1370)
-.|.+.....+.++.+.++. -|... ...+-.-|+...|-++.....+++..|+.-+++-.+.++..-|--|+-
T Consensus 27 ~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACE 106 (675)
T KOG0212|consen 27 LVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACE 106 (675)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHH
Confidence 45566666777777777762 23322 112334455444444554555566677666666666666655544332
Q ss_pred ---------------HHHHhh-------hcC---C-chhh-----------------HHHHHHHHHHhhcCCCChhHHHH
Q 000655 1053 ---------------ALSEFV-------RYS---G-GFDS-----------------LLEQMVEALCRHVSDESPTVRGL 1089 (1370)
Q Consensus 1053 ---------------f~sELl-------~~~---~-~~~~-----------------l~~~~i~~L~~~l~D~~~~VR~l 1089 (1370)
||-++- ..+ + +..+ =++..+-.|.+++.+-||.+|..
T Consensus 107 sLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~f 186 (675)
T KOG0212|consen 107 SLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQF 186 (675)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHH
Confidence 121111 000 0 0111 13446677888999999999988
Q ss_pred Hhhhcc---CCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHH
Q 000655 1090 CLRGLV---QIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKM 1166 (1370)
Q Consensus 1090 sLrGLg---nl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~v 1166 (1370)
.+.=|. +.+.-++-.|.+.+++.++.-|.|..++|+--+=.+|+..|........+--..++..-+-|-.....+.+
T Consensus 187 lv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~i 266 (675)
T KOG0212|consen 187 LVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEI 266 (675)
T ss_pred HHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHH
Confidence 876544 44444788899999999999999999999988888888888877655444233444444556677788999
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCC
Q 000655 1167 RRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSD 1246 (1370)
Q Consensus 1167 R~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~ 1246 (1370)
+..|+.-.-..++..+ .. +.-+.-+.+.-+|-.+.|.++.-.+.|+ ...+-.+..++...-.+ ..++
T Consensus 267 q~~al~Wi~efV~i~g-~~---~l~~~s~il~~iLpc~s~~e~~~i~~~a-------~~~n~~l~~l~s~~~~~--~~id 333 (675)
T KOG0212|consen 267 QLKALTWIQEFVKIPG-RD---LLLYLSGILTAILPCLSDTEEMSIKEYA-------QMVNGLLLKLVSSERLK--EEID 333 (675)
T ss_pred HHHHHHHHHHHhcCCC-cc---hhhhhhhhhhhcccCCCCCccccHHHHH-------HHHHHHHHHHHhhhhhc--cccc
Confidence 9999888887777432 22 3333334444455556676664222222 12221222222222111 2266
Q ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCCh
Q 000655 1247 YETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1326 (1370)
Q Consensus 1247 ~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp 1326 (1370)
|+..++-+ ..|+.+...+-|-+|--.|-.+....|.+..... ..++..|.. -+.|++.
T Consensus 334 ~~~ii~vl-------------------~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~--~~if~tLL~-tLsd~sd 391 (675)
T KOG0212|consen 334 YGSIIEVL-------------------TKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN--DSIFLTLLK-TLSDRSD 391 (675)
T ss_pred hHHHHHHH-------------------HHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc--cHHHHHHHH-hhcCchh
Confidence 66555433 3488888999999999889888888887766433 668888888 6899999
Q ss_pred hhHHHHHHHHHHHHHHcccc
Q 000655 1327 IVRATCSSSLGWLLKSINSH 1346 (1370)
Q Consensus 1327 ~VR~~Aa~aL~~l~k~~~~~ 1346 (1370)
.|--.+-+-+..+.+.+++.
T Consensus 392 ~vvl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSSNSP 411 (675)
T ss_pred HHHHHHHHHHHHHhcCcccc
Confidence 99888877777777666654
No 61
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.70 E-value=0.077 Score=66.45 Aligned_cols=281 Identities=16% Similarity=0.177 Sum_probs=178.1
Q ss_pred ChHHHHHHHHH--HHHHhhcchHHHHHHHhcCCCC--ChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcc
Q 000655 972 EPLRAILTSFQ--AFCECVGDLEMRKILARDGEQN--DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQR 1047 (1370)
Q Consensus 972 ~P~~~aleAlk--~ll~~~g~~~~~~~L~~~g~W~--~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~R 1047 (1370)
++++...++.. .++ +.+.-++...|+.-.-=+ ....|..|.....+...+.-+ ...++..|+-.+....
T Consensus 234 n~~~~~~~~~~~~gff-~n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~--~~kvlp~Ll~~~~~g~---- 306 (690)
T KOG1243|consen 234 NKLRFILECRLLGGFF-RNDFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEII--ASKVLPILLAALEFGD---- 306 (690)
T ss_pred chhhHHHHHHhccccc-cchHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhhccc----
Confidence 35555555443 222 223334444555322111 566777777664454433211 3344444444433333
Q ss_pred hHHHHHHHHhhhcC--CchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhcccCChhH
Q 000655 1048 EAAAAALSEFVRYS--GGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESV 1124 (1370)
Q Consensus 1048 i~a~af~sELl~~~--~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~V 1124 (1370)
+|..|++=++..- ...+.....++-.|.+-++-++..||.+-|+++-+-..+ .-..+-.++++.+..|+.|++..+
T Consensus 307 -a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~L 385 (690)
T KOG1243|consen 307 -AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATL 385 (690)
T ss_pred -cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHH
Confidence 5556666665531 112233455788999999999999999999998876654 334566889999999999999999
Q ss_pred HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhc
Q 000655 1125 QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI 1204 (1370)
Q Consensus 1125 ~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL 1204 (1370)
+..++..+..+...|+...++.-++..--+++| |+...+|...-...|+++.
T Consensus 386 re~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~---d~~~~irtntticlgki~~------------------------- 437 (690)
T KOG1243|consen 386 REQTLKSMAVLAPKLSKRNLNGELLRYLARLQP---DEHGGIRTNTTICLGKIAP------------------------- 437 (690)
T ss_pred HHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCc---cccCcccccceeeeccccc-------------------------
Confidence 999999999999999888777666666666666 7777777776666666554
Q ss_pred cCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhH
Q 000655 1205 YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPII 1284 (1370)
Q Consensus 1205 ~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~I 1284 (1370)
+-.|.||+. + +.+ -| ..-+++|.++-
T Consensus 438 -~l~~~~R~~------------------v-----------L~~-af-----------------------tralkdpf~pa 463 (690)
T KOG1243|consen 438 -HLAASVRKR------------------V-----------LAS-AF-----------------------TRALKDPFVPA 463 (690)
T ss_pred -ccchhhhcc------------------c-----------cch-hh-----------------------hhhhcCCCCCc
Confidence 112233220 0 000 01 11357888888
Q ss_pred HHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHccccc
Q 000655 1285 QANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSHS 1347 (1370)
Q Consensus 1285 R~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~~ 1347 (1370)
|.++++-.-...++++.+... ..+...+.- +.-||++.||..|-.++..+......++
T Consensus 464 R~a~v~~l~at~~~~~~~~va----~kIlp~l~p-l~vd~e~~vr~~a~~~i~~fl~kl~~~~ 521 (690)
T KOG1243|consen 464 RKAGVLALAATQEYFDQSEVA----NKILPSLVP-LTVDPEKTVRDTAEKAIRQFLEKLEKVS 521 (690)
T ss_pred hhhhhHHHhhcccccchhhhh----hhccccccc-cccCcccchhhHHHHHHHHHHhhhhhhc
Confidence 888877555555566544442 446666777 8899999999999999888775555554
No 62
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.68 E-value=0.099 Score=67.54 Aligned_cols=166 Identities=14% Similarity=0.201 Sum_probs=96.9
Q ss_pred HHHHHHHHhhhhcccc----cCcchHHHHHHHHhhhc-CCc--------------hhhHHHHHHHHHHhhcCCCChhHHH
Q 000655 1028 VQTICLILTKSINRQQ----RFQREAAAAALSEFVRY-SGG--------------FDSLLEQMVEALCRHVSDESPTVRG 1088 (1370)
Q Consensus 1028 ~~~i~~~L~~~L~s~~----~~~Ri~a~af~sELl~~-~~~--------------~~~l~~~~i~~L~~~l~D~~~~VR~ 1088 (1370)
-..++..+..+++++. ..-|.+|+.-++.+++. |.. ...+.+.+...|.......+...+.
T Consensus 429 t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 508 (618)
T PF01347_consen 429 TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKI 508 (618)
T ss_dssp -HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 4666666666666543 23366788888888874 111 2344566667777777778889999
Q ss_pred HHhhhccCCcchhhhhhHHHHHHHHHhhcccC---ChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc-CCCh
Q 000655 1089 LCLRGLVQIPSIHIHQYATQVLSVILALLDDL---DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV-SMNV 1164 (1370)
Q Consensus 1089 lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~---d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe-de~~ 1164 (1370)
++||||||++. +..++.+..-+.+. ...++..|+.+|+++...- ...+..++..| |++ .|..
T Consensus 509 ~~LkaLgN~g~-------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I------~~n~~e~~ 574 (618)
T PF01347_consen 509 VYLKALGNLGH-------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPI------FMNTTEDP 574 (618)
T ss_dssp HHHHHHHHHT--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHH------HH-TTS-H
T ss_pred HHHHHhhccCC-------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHH------hcCCCCCh
Confidence 99999999986 34466666666665 3568888888888774432 33445555554 344 4567
Q ss_pred HHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHH
Q 000655 1165 KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTL 1219 (1370)
Q Consensus 1165 ~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL 1219 (1370)
+||.+|+.++=.-. -.... ++.+.-.+- .|++.+|+.....+|
T Consensus 575 EvRiaA~~~lm~~~------P~~~~----l~~i~~~l~--~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 575 EVRIAAYLILMRCN------PSPSV----LQRIAQSLW--NEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHHHHT---------HHH----HHHHHHHHT--T-S-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC------CCHHH----HHHHHHHHh--hCchHHHHHHHHHhc
Confidence 88888876544311 11222 233332222 477888887766555
No 63
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.62 E-value=0.038 Score=54.34 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=76.9
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHH-hHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcch
Q 000655 1108 QVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL-NLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR 1186 (1370)
Q Consensus 1108 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~-~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~ 1186 (1370)
.+++.+++.|.+.+.++...|+.+|+++-...+. ....+.- .+...+.+++.+.++.+|..|..+++.++....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~---- 81 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNND-NIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE---- 81 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH----
Confidence 3678888888888889999999999998865221 1111111 444555667888999999999999999987321
Q ss_pred HHHHHHHHh-hhhHHHHhccCCChhHHHHHHHHHHhhc
Q 000655 1187 EAFLEQIHA-MLPRLILHIYDDDLSVRQACRNTLKQVA 1223 (1370)
Q Consensus 1187 ~~~~eQv~~-~LvpLLlHL~D~~~~V~~ack~tL~~~a 1223 (1370)
..-...+.. .+.-|+-+++|++..|++.+-.+|..++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 121222223 3444555566778999999999988764
No 64
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.45 E-value=2.2 Score=52.44 Aligned_cols=310 Identities=12% Similarity=0.119 Sum_probs=190.5
Q ss_pred ChhhHHHHHHHHHhHhhhcCch-hHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCC
Q 000655 1005 DKEKWINLIGDVAGCVSIKRPK-EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDES 1083 (1370)
Q Consensus 1005 ~~e~~~~gV~lLAr~m~~~~~~-~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~ 1083 (1370)
++-.-+.++++|++ .+.+.. -.-.+++++..-..=.+.--.+.-+-..++++... ..++.++.-.|..|++|--
T Consensus 203 ~~isqYHalGlLyq--~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n---~q~~~q~rpfL~~wls~k~ 277 (898)
T COG5240 203 NPISQYHALGLLYQ--SKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKEN---SQALLQLRPFLNSWLSDKF 277 (898)
T ss_pred ChHHHHHHHHHHHH--HhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhC---hHHHHHHHHHHHHHhcCcc
Confidence 44445567788887 333222 12233333333221111111333444556666643 2345667789999999977
Q ss_pred hhHHHHHhhhccCCcchh-hhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCC
Q 000655 1084 PTVRGLCLRGLVQIPSIH-IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM 1162 (1370)
Q Consensus 1084 ~~VR~lsLrGLgnl~~~~-v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede 1162 (1370)
..|-.-+.|.+..++... ...+..+.+.++-..|.......+..||++|..+-..-+ +.++..= ..+-.+..|+
T Consensus 278 emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P-~kv~vcN----~evEsLIsd~ 352 (898)
T COG5240 278 EMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP-QKVSVCN----KEVESLISDE 352 (898)
T ss_pred hhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC-ceeeecC----hhHHHHhhcc
Confidence 777666666655544332 223456666777666665566677899999999876543 3332221 1235677888
Q ss_pred ChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccccCCc
Q 000655 1163 NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNS 1241 (1370)
Q Consensus 1163 ~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~~~~~~~ 1241 (1370)
|-.+---||. .|.+.|....- +.+.+.++..+--+.|.=.-|+--+-++|+-..|. +| ..-..+..-+.+
T Consensus 353 Nr~IstyAIT---tLLKTGt~e~i----drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~-k~~s~l~FL~~~L~~- 423 (898)
T COG5240 353 NRTISTYAIT---TLLKTGTEETI----DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS-KKLSYLDFLGSSLLQ- 423 (898)
T ss_pred cccchHHHHH---HHHHcCchhhH----HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH-HHHHHHHHHHHHHHh-
Confidence 8776666665 45554433333 33444455555556666555655555666555543 44 333333333233
Q ss_pred CCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhc
Q 000655 1242 DHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS 1321 (1370)
Q Consensus 1242 ~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll 1321 (1370)
++++.|-..+-+...-.++.-|+.-..-+...-.|..+.+-+ .-++..+|.++...|........+-.+++.++-
T Consensus 424 eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL--- 498 (898)
T COG5240 424 EGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLIL--- 498 (898)
T ss_pred cccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH---
Confidence 456766656666666778888888888888877888776542 447889999999888666556677889998886
Q ss_pred cCCChhhHHHHHHHHHHHH
Q 000655 1322 QSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1322 ~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
+...||..|.+||..+.
T Consensus 499 --EN~ivRsaAv~aLskf~ 515 (898)
T COG5240 499 --ENNIVRSAAVQALSKFA 515 (898)
T ss_pred --hhhHHHHHHHHHHHHhc
Confidence 78999999999998776
No 65
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.44 E-value=0.45 Score=61.53 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=67.4
Q ss_pred hHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHH-HHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhh
Q 000655 1027 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLL-EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQ 1104 (1370)
Q Consensus 1027 ~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~-~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~ 1104 (1370)
.-++++..|++.|++.+..-.+.++.|+-.|--......... ..++..|.+-+..++..++..++|-|.|++.+ .++.
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 346778888888888887778888888888765443333333 23777888888889999999999999999875 3322
Q ss_pred --hHHHHHHHHHhhcccCC
Q 000655 1105 --YATQVLSVILALLDDLD 1121 (1370)
Q Consensus 1105 --~~~~lL~all~~L~d~d 1121 (1370)
-...++|.+...|.+.+
T Consensus 367 ~mV~~GlIPkLv~LL~d~~ 385 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDPN 385 (708)
T ss_pred HHHHCCCcHHHHHHhCCCc
Confidence 12335677777776543
No 66
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.45 Score=62.16 Aligned_cols=256 Identities=18% Similarity=0.204 Sum_probs=156.3
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCC-hhHHHHHHHHHHHHhccC-Cc--
Q 000655 1066 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSS-SK-- 1141 (1370)
Q Consensus 1066 ~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d-~~V~leAm~~L~~lL~~l-~~-- 1141 (1370)
.-+|.++..|..+++|.+..||+-+.+|+|.+..+--..+..+++++.++.+-..+ +..-..|+.+|+.+-..= -.
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 34577899999999999999999999999999877446678899999999666555 567778888888886530 00
Q ss_pred --CCcchhHHhHHhhhcCcCcCCC------hHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHH
Q 000655 1142 --DAVEPILLNLSVRLRNLQVSMN------VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQ 1213 (1370)
Q Consensus 1142 --~~~~~~l~~i~~~lrpffede~------~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ 1213 (1370)
.++.|+++. -=.||+.+ .+||-+|-.+-=++++.-..+..+++.+++...|+---+ =|++..+|.
T Consensus 417 ~l~dVvplI~k-----aL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~Al--FDrevncRR 489 (1133)
T KOG1943|consen 417 LLEDVVPLILK-----ALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVAL--FDREVNCRR 489 (1133)
T ss_pred HHHHHHHHHHH-----HhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHh--cCchhhHhH
Confidence 012222210 12345443 789999988876666633333445566666666655444 499999999
Q ss_pred HHHHHHHhhch----h-hhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC-hhHHHH
Q 000655 1214 ACRNTLKQVAP----F-MEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW-PIIQAN 1287 (1370)
Q Consensus 1214 ack~tL~~~a~----l-L~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~-~~IR~a 1287 (1370)
|+..||....- + -|-++....+=..... +. ..+.++|..+. +|++....++...+.-==+.| +.||.-
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~-rs----Ncy~~l~~~ia-~~~~y~~~~f~~L~t~Kv~HWd~~irel 563 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTIDYFSVTN-RS----NCYLDLCVSIA-EFSGYREPVFNHLLTKKVCHWDVKIREL 563 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhcchhhhhh-hh----hHHHHHhHHHH-hhhhHHHHHHHHHHhcccccccHHHHHH
Confidence 99998876432 1 1112211111111110 11 12345565544 567777766666444323567 448888
Q ss_pred HHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1288 AIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1288 A~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
|++-+-.+....+ +... +.++.-+.. ..--+|+.-|..+.-|.|.+-
T Consensus 564 aa~aL~~Ls~~~p-k~~a----~~~L~~lld-~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 564 AAYALHKLSLTEP-KYLA----DYVLPPLLD-STLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHHHHHHHhhH-Hhhc----ccchhhhhh-hhcCCChHHhhhhHHHHHHHH
Confidence 8887776554444 2222 122223333 344477888877666666544
No 67
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.43 E-value=0.21 Score=65.56 Aligned_cols=252 Identities=12% Similarity=0.157 Sum_probs=150.0
Q ss_pred hHHHHHHHHhhhhcccccCcchHHHHHHHHhhhc-----CCchhhHHHHHHHHHHhhcCC-CChhHHHHHhhhccCCcch
Q 000655 1027 EVQTICLILTKSINRQQRFQREAAAAALSEFVRY-----SGGFDSLLEQMVEALCRHVSD-ESPTVRGLCLRGLVQIPSI 1100 (1370)
Q Consensus 1027 ~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~-----~~~~~~l~~~~i~~L~~~l~D-~~~~VR~lsLrGLgnl~~~ 1100 (1370)
.+.+|+-|++-.++.++...|++|+-.++++|.. +.+.....|+++-.|..-+.| .+..||..=..-|+.+|.-
T Consensus 459 ~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 459 KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH
Confidence 4567777777777777777777777777777763 122344556777677666777 5666776666666665532
Q ss_pred --hhhhhHHHHHHH-HHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHh
Q 000655 1101 --HIHQYATQVLSV-ILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1177 (1370)
Q Consensus 1101 --~v~~~~~~lL~a-ll~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L 1177 (1370)
..-.+...+=.+ +++.. +++ + .-....+.....+...+....-.|..|+.+-||.+=.+-.+.|
T Consensus 539 A~rFle~~q~~~~~g~~n~~---nse-------t---~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~L 605 (1431)
T KOG1240|consen 539 AYRFLELTQELRQAGMLNDP---NSE-------T---APEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPL 605 (1431)
T ss_pred HHHHHHHHHHHHhcccccCc---ccc-------c---ccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 111111111111 11211 111 0 0011112233444445555556778888889999888888888
Q ss_pred hcc-CCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhh----ccccCCcCCCCChHHHH
Q 000655 1178 SNF-GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIF----NSHCFNSDHRSDYETFV 1251 (1370)
Q Consensus 1178 ~~~-~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf----~~~~~~~~~~l~~~~f~ 1251 (1370)
+.| |+.+.-+.+. .=|+-.|+|.++..|-|==.++--++.++|| .+.+.+ +. .+.|++..=-...+
T Consensus 606 C~FFGk~ksND~iL-------shLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q-~ltD~EE~Viv~aL 677 (1431)
T KOG1240|consen 606 CVFFGKEKSNDVIL-------SHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ-GLTDGEEAVIVSAL 677 (1431)
T ss_pred HHHhhhcccccchH-------HHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH-hccCcchhhHHHHH
Confidence 884 5444444433 3345567899998888877778888889999 454432 22 24554322111111
Q ss_pred HHHHHHHHHh-C--cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCc
Q 000655 1252 RDLTRQFVQH-F--PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1300 (1370)
Q Consensus 1252 ~~i~k~L~~~-~--~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~ 1300 (1370)
.. .+.|.+. + .-.+-.++.....|+=-|..-||++|+.||-.+.+...
T Consensus 678 ~~-ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 678 GS-LSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HH-HHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 11 1223222 2 33466778888999999999999999999998887665
No 68
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.40 E-value=0.1 Score=59.56 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=86.3
Q ss_pred HHHHHHhhhhccccc-CcchHHHHHHHHhhhcCCchhhHHHH--HHHHHHhhcCCCChhHHHHHhhhccCCcch-----h
Q 000655 1030 TICLILTKSINRQQR-FQREAAAAALSEFVRYSGGFDSLLEQ--MVEALCRHVSDESPTVRGLCLRGLVQIPSI-----H 1101 (1370)
Q Consensus 1030 ~i~~~L~~~L~s~~~-~~Ri~a~af~sELl~~~~~~~~l~~~--~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-----~ 1101 (1370)
+-+.-++.+|++..+ .-+-.|...++..-..+.. +..+.. .+..+.+-+.+|+|.||.-++.+|.|++.. +
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 334445555554433 2233333333333222322 222222 566777888999999999999999999853 6
Q ss_pred hhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhc
Q 000655 1102 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1179 (1370)
Q Consensus 1102 v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1179 (1370)
++.|.+.++.-+.+. ..|+++.+.+++.|.++- ++ .+...++.+..-.+.+++...+..+|.-+..++-.|+.
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLt--v~-~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLT--VT-NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccC--CC-cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 778888888887774 347889988888888873 22 22233333333333455555666666666666666654
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=3.5 Score=52.17 Aligned_cols=198 Identities=18% Similarity=0.201 Sum_probs=118.4
Q ss_pred ccCCCCchh------HHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhc
Q 000655 862 LRGGWPMQD------AFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRG 935 (1370)
Q Consensus 862 L~~~lP~d~------~W~ala~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~ 935 (1370)
|+++-|+-| +++.+-.-|.-.+.-++.|-++|...-| -+--||++.+||+-+-
T Consensus 153 L~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp---------------------~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 153 LNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDP---------------------SVVSAAVSVICELARK 211 (877)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCc---------------------hHHHHHHHHHHHHHhh
Confidence 577788877 6888888888888888888887532211 1123899999998776
Q ss_pred CCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHH
Q 000655 936 GGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGD 1015 (1370)
Q Consensus 936 ~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~l 1015 (1370)
+ |+=+ +..|-.=||-+-..++.|-..+.+..-|...
T Consensus 212 n------------Pkny---------------------L~LAP~ffkllttSsNNWmLIKiiKLF~aLt----------- 247 (877)
T KOG1059|consen 212 N------------PQNY---------------------LQLAPLFYKLLVTSSNNWVLIKLLKLFAALT----------- 247 (877)
T ss_pred C------------Cccc---------------------ccccHHHHHHHhccCCCeehHHHHHHHhhcc-----------
Confidence 5 2200 1123344555556677887777776544332
Q ss_pred HHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCC---------chhhHHHHHHHHHHhhcCCCChhH
Q 000655 1016 VAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSG---------GFDSLLEQMVEALCRHVSDESPTV 1086 (1370)
Q Consensus 1016 LAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~---------~~~~l~~~~i~~L~~~l~D~~~~V 1086 (1370)
..-|..-+.++.-+...+ ++.+|+..+-|=+|.-. .......-.+..|..-+.|+++..
T Consensus 248 ------plEPRLgKKLieplt~li------~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNL 315 (877)
T KOG1059|consen 248 ------PLEPRLGKKLIEPITELM------ESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNL 315 (877)
T ss_pred ------ccCchhhhhhhhHHHHHH------HhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccH
Confidence 112211122222121121 22344444444444210 111122335667777789999999
Q ss_pred HHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhc
Q 000655 1087 RGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILK 1137 (1370)
Q Consensus 1087 R~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~ 1137 (1370)
+=++|-+++.++.-+- ..++.-.+-++.+|+|+|+.|+++|+.-|--++.
T Consensus 316 KYlgLlam~KI~ktHp-~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 316 KYLGLLAMSKILKTHP-KAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHHHHHHhhhCH-HHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 9999999998875311 1123335567888999999999999987766654
No 70
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.29 E-value=0.85 Score=51.44 Aligned_cols=189 Identities=18% Similarity=0.270 Sum_probs=98.7
Q ss_pred HHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHH
Q 000655 1110 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1189 (1370)
Q Consensus 1110 L~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1189 (1370)
+.++...+.|..+..--|+.-.|+.. ...+.-++++++ +.-++..+-||-.|-..||++.. ...-.+
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~----~~~~Av~~l~~v-----l~desq~pmvRhEAaealga~~~----~~~~~~ 104 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQM----QDEDAVPVLVEV-----LLDESQEPMVRHEAAEALGAIGD----PESLEI 104 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhh----ccchhhHHHHHH-----hcccccchHHHHHHHHHHHhhcc----hhhHHH
Confidence 55666666554222222444444432 233334455443 34566778999999999999873 111111
Q ss_pred HHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh--hhhhhhccccCCc-CC--CCChHHHHHHHHHHHHHhCcc
Q 000655 1190 LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNS-DH--RSDYETFVRDLTRQFVQHFPS 1264 (1370)
Q Consensus 1190 ~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w--~l~~lf~~~~~~~-~~--~l~~~~f~~~i~k~L~~~~~~ 1264 (1370)
.++ . .+|++..|+..|..|+.+ ++| ......+...+.. +. ..+..+ +.++-..|......
T Consensus 105 l~k--------~--~~dp~~~v~ETc~lAi~r----le~~~~~~~~~~~~p~~SvdPa~p~~~ss-v~~lr~~lld~t~~ 169 (289)
T KOG0567|consen 105 LTK--------Y--IKDPCKEVRETCELAIKR----LEWKDIIDKIANSSPYISVDPAPPANLSS-VHELRAELLDETKP 169 (289)
T ss_pred HHH--------H--hcCCccccchHHHHHHHH----HHHhhccccccccCccccCCCCCcccccc-HHHHHHHHHhcchh
Confidence 111 1 279999999999999998 456 2222111111110 00 101111 34555566665555
Q ss_pred hHHHHHHHHHHhhcC----------------CChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhc-cCCChh
Q 000655 1265 RIDSYMGSTIQAFEA----------------PWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS-QSADAI 1327 (1370)
Q Consensus 1265 ~~~~~l~~~l~y~kS----------------~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll-~Dpdp~ 1327 (1370)
.+..| +++.|+++ +..-+|-.++...|++-... .+..|.+.|+ .-+.|+
T Consensus 170 l~~Ry--~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E~pM 235 (289)
T KOG0567|consen 170 LFERY--RAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETEHPM 235 (289)
T ss_pred HHHHH--hhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhcchH
Confidence 55555 55555554 34446666666666554322 1222333111 236677
Q ss_pred hHHHHHHHHHHHH
Q 000655 1328 VRATCSSSLGWLL 1340 (1370)
Q Consensus 1328 VR~~Aa~aL~~l~ 1340 (1370)
||.-||+|||.+.
T Consensus 236 VRhEaAeALGaIa 248 (289)
T KOG0567|consen 236 VRHEAAEALGAIA 248 (289)
T ss_pred HHHHHHHHHHhhc
Confidence 7777777776644
No 71
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=14 Score=47.68 Aligned_cols=379 Identities=13% Similarity=0.135 Sum_probs=191.8
Q ss_pred HHHhhc--CcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhH
Q 000655 872 FHAFSQ--HAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYA 949 (1370)
Q Consensus 872 W~ala~--d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp 949 (1370)
--++|. .+++++.+...+-+.|+.+-++ +.=-|+.||.+-+..+| +.-+-....|.
T Consensus 128 L~alg~i~s~EmardlapeVe~Ll~~~~~~--------------------irKKA~Lca~r~irK~P--~l~e~f~~~~~ 185 (866)
T KOG1062|consen 128 LCALGNICSPEMARDLAPEVERLLQHRDPY--------------------IRKKAALCAVRFIRKVP--DLVEHFVIAFR 185 (866)
T ss_pred HHHhhccCCHHHhHHhhHHHHHHHhCCCHH--------------------HHHHHHHHHHHHHHcCc--hHHHHhhHHHH
Confidence 444554 6778888888888888775544 34458999999999988 44333333333
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCh----HH---HHHHHHHHHHHhhcchHHHHHHHh--cCCCCChhhHHHHHH------
Q 000655 950 PVLAALTLQLGSCHGLASSGQHEP----LR---AILTSFQAFCECVGDLEMRKILAR--DGEQNDKEKWINLIG------ 1014 (1370)
Q Consensus 950 ~Lf~aLL~ql~~~~~~~~~~~~~P----~~---~aleAlk~ll~~~g~~~~~~~L~~--~g~W~~~e~~~~gV~------ 1014 (1370)
+++. -= -+|+-..+ +.+ |. .+++-||. +++. .+..|+. .++.. +|.=+.||.
T Consensus 186 ~lL~----ek--~hGVL~~~-l~l~~e~c~~~~~~l~~fr~---l~~~--lV~iLk~l~~~~ys-peydv~gi~dPFLQi 252 (866)
T KOG1062|consen 186 KLLC----EK--HHGVLIAG-LHLITELCKISPDALSYFRD---LVPS--LVKILKQLTNSGYS-PEYDVHGISDPFLQI 252 (866)
T ss_pred HHHh----hc--CCceeeeH-HHHHHHHHhcCHHHHHHHHH---HHHH--HHHHHHHHhcCCCC-CccCccCCCchHHHH
Confidence 3322 11 23331111 111 22 24445553 3222 2445553 23322 222222221
Q ss_pred ---HHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcC---CchhhHHHHHHHHHHhhcCCCChhHHH
Q 000655 1015 ---DVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS---GGFDSLLEQMVEALCRHVSDESPTVRG 1088 (1370)
Q Consensus 1015 ---lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~---~~~~~l~~~~i~~L~~~l~D~~~~VR~ 1088 (1370)
.+-|-+-+.. +.....++-++--.-..-|..|=++=|++-|=+.+- ..+..+..-.+|.|.+.+..++-.+|=
T Consensus 253 ~iLrlLriLGq~d-~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirY 331 (866)
T KOG1062|consen 253 RILRLLRILGQND-ADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRY 331 (866)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceee
Confidence 1234444433 345566666655555566666777777777765531 223455566777888888888888888
Q ss_pred HHhhhccCCcc---hhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChH
Q 000655 1089 LCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1165 (1370)
Q Consensus 1089 lsLrGLgnl~~---~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~ 1165 (1370)
++|.+|+.+-. .-+.+|+.++ +++|+|.|..+..+||.-+-.+++. ..+. .+..++-.|++.-.++
T Consensus 332 vaLn~L~r~V~~d~~avqrHr~tI----leCL~DpD~SIkrralELs~~lvn~---~Nv~----~mv~eLl~fL~~~d~~ 400 (866)
T KOG1062|consen 332 VALNMLLRVVQQDPTAVQRHRSTI----LECLKDPDVSIKRRALELSYALVNE---SNVR----VMVKELLEFLESSDED 400 (866)
T ss_pred eehhhHHhhhcCCcHHHHHHHHHH----HHHhcCCcHHHHHHHHHHHHHHhcc---ccHH----HHHHHHHHHHHhccHH
Confidence 88888775542 1445555444 4456777777777777777766653 2222 2333444455554444
Q ss_pred HHHHHHHHHHHhhc-cCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCC
Q 000655 1166 MRRNAFAAFGALSN-FGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHR 1244 (1370)
Q Consensus 1166 vR~aAi~LfG~L~~-~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~ 1244 (1370)
+|+.-..---.++. |. +.+.|+.+++.+.+-.-= .-
T Consensus 401 ~k~~~as~I~~laEkfa--P~k~W~idtml~Vl~~aG-----------------------------------------~~ 437 (866)
T KOG1062|consen 401 FKADIASKIAELAEKFA--PDKRWHIDTMLKVLKTAG-----------------------------------------DF 437 (866)
T ss_pred HHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHhcc-----------------------------------------cc
Confidence 44433322222221 22 233344433333222111 11
Q ss_pred CChHHHHHHHHHHHHHhCcchHHHH---HHHHHH---hhcCCChhHHHHHHHHHhhhhc----cCchhhhhhccHHHHHH
Q 000655 1245 SDYETFVRDLTRQFVQHFPSRIDSY---MGSTIQ---AFEAPWPIIQANAIYFSSSILC----LCDDQHILSLFYTQVFG 1314 (1370)
Q Consensus 1245 l~~~~f~~~i~k~L~~~~~~~~~~~---l~~~l~---y~kS~~~~IR~aA~~fiG~l~~----~~~~~~~~~~~~e~l~~ 1314 (1370)
.+ ++.++++.+.+.+.+++.-..- +..++. ...-+++++-+-|+|-||--+. ....+.-..+.-++++.
T Consensus 438 V~-~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd 516 (866)
T KOG1062|consen 438 VN-DDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVD 516 (866)
T ss_pred cc-hhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHH
Confidence 11 2334444444443333221110 111111 2245677788899999995442 21123333344455666
Q ss_pred HHHHHhc-cCCChhhHHHHHHHHHHHHH
Q 000655 1315 LLVVKLS-QSADAIVRATCSSSLGWLLK 1341 (1370)
Q Consensus 1315 ~L~~~Ll-~Dpdp~VR~~Aa~aL~~l~k 1341 (1370)
-|..++. ...++.++.-|-.||-.|..
T Consensus 517 ~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 517 KLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 6665222 23557777777777666553
No 72
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.17 E-value=0.41 Score=61.70 Aligned_cols=189 Identities=17% Similarity=0.205 Sum_probs=124.5
Q ss_pred ChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCCh
Q 000655 1005 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESP 1084 (1370)
Q Consensus 1005 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~ 1084 (1370)
+...=++|+--+-..|..+.. ++.++..+++...+.+-..+-. ++--+.+.+..+..+---++|.+.+-++||||
T Consensus 32 n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL---~ylYl~~yak~~P~~~lLavNti~kDl~d~N~ 106 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRL---LYLYLERYAKLKPELALLAVNTIQKDLQDPNE 106 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHH---HHHHHHHHhccCHHHHHHHHHHHHhhccCCCH
Confidence 345566777766666665544 6666666666666433222221 11122223333222222367899999999999
Q ss_pred hHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCCh
Q 000655 1085 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNV 1164 (1370)
Q Consensus 1085 ~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~ 1164 (1370)
.+|.+|+|-||.+... +..+++++++...+.|.+.-|+-.|..++.++-+. +..-+... .....+.-+..|+++
T Consensus 107 ~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~--g~~~~l~~l~~D~dP 180 (757)
T COG5096 107 EIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHEL--GLIDILKELVADSDP 180 (757)
T ss_pred HHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcc--cHHHHHHHHhhCCCc
Confidence 9999999999998854 34678899999999999999999999999999854 33322211 012223456779999
Q ss_pred HHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCC
Q 000655 1165 KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDD 1208 (1370)
Q Consensus 1165 ~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~ 1208 (1370)
.|-++|+..+-.+-. ....++...+...+..|.+-+.+.+
T Consensus 181 ~Vi~nAl~sl~~i~~----e~a~~~~~~~~~~i~~l~~~~~~~~ 220 (757)
T COG5096 181 IVIANALASLAEIDP----ELAHGYSLEVILRIPQLDLLSLSVS 220 (757)
T ss_pred hHHHHHHHHHHHhch----hhhhhHHHHHHHHhhhccchhhhhh
Confidence 999999998888765 1344555666666666555444443
No 73
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.67 Score=62.45 Aligned_cols=277 Identities=14% Similarity=0.177 Sum_probs=168.5
Q ss_pred hhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCc-hh--hHHHHHHHHHHhhcCCCChhHHHHHhhhccCC---cc
Q 000655 1026 KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FD--SLLEQMVEALCRHVSDESPTVRGLCLRGLVQI---PS 1099 (1370)
Q Consensus 1026 ~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~-~~--~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl---~~ 1099 (1370)
....-+...+...+.|++...|-+++..+--+++++.. .+ .-...+.......+.|.+.-++-.|-||||-+ +.
T Consensus 814 ~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd 893 (1702)
T KOG0915|consen 814 TRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGD 893 (1702)
T ss_pred ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCC
Confidence 34556777788888899999999999888888887642 11 12355678899999999999999999999944 44
Q ss_pred hhh-hhhHHHHHHHHHhhcccCC----h-hH-------------HHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc
Q 000655 1100 IHI-HQYATQVLSVILALLDDLD----E-SV-------------QLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1160 (1370)
Q Consensus 1100 ~~v-~~~~~~lL~all~~L~d~d----~-~V-------------~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe 1160 (1370)
+.. ...+..+++.+..|=.... + .+ -+.+..-|-++-..+++-++.--+.++|..
T Consensus 894 ~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh------ 967 (1702)
T KOG0915|consen 894 SSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANH------ 967 (1702)
T ss_pred chhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhh------
Confidence 322 2234444555444322110 1 11 122333344444444444433333344332
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCC
Q 000655 1161 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFN 1240 (1370)
Q Consensus 1161 de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~ 1240 (1370)
+-...=|..|..=||.+++-. .+.+.-...+.++.|.-.=-||++.|..+-..-...+.
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a----~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li----------------- 1026 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQA----GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALI----------------- 1026 (1702)
T ss_pred hchhhcccchhhchHHHHHHH----HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhc-----------------
Confidence 222334555556689998744 22333333445556666667999999876543322211
Q ss_pred cCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHh
Q 000655 1241 SDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKL 1320 (1370)
Q Consensus 1241 ~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~L 1320 (1370)
.|.+.--++++++|.+-|.... -|--.++|-+++.-+--+++--|.++..+.=.|.-..+++-
T Consensus 1027 ~D~k~~vd~y~neIl~eLL~~l---------------t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRv-- 1089 (1702)
T KOG0915|consen 1027 TDSKKVVDEYLNEILDELLVNL---------------TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRV-- 1089 (1702)
T ss_pred cChHHHHHHHHHHHHHHHHHhc---------------cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH--
Confidence 1222233556666666555444 44466799999999999999877555443333444555554
Q ss_pred ccCCChhhHHHHHHHHHHHHHHcccc
Q 000655 1321 SQSADAIVRATCSSSLGWLLKSINSH 1346 (1370)
Q Consensus 1321 l~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1346 (1370)
..|=-.+||..|..|...+.|.|-+.
T Consensus 1090 mDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1090 MDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 78889999999988888887766543
No 74
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=12 Score=46.40 Aligned_cols=372 Identities=17% Similarity=0.188 Sum_probs=214.5
Q ss_pred HHHHHHHHHhhhcCCCCCCcHHHHHHHHH-HHHHHhcChhHHHhhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhh
Q 000655 564 NLITLLCAILLTSGEDGRSRADQLLHILR-QIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQ 642 (1370)
Q Consensus 564 aL~~lL~~ll~~~~~d~~~~~~~L~~iL~-~l~pwl~S~~~heR~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~ 642 (1370)
.+.++...++.++. .+++..+++ ....++.|.....|+-++.-.+.+-- | ||
T Consensus 23 elEk~Vk~l~~~~~------~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~i----------a-Lg---------- 75 (675)
T KOG0212|consen 23 ELEKLVKDLVNNND------YDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAI----------A-LG---------- 75 (675)
T ss_pred HHHHHHHHHHccCc------HHHHHHHHHHHHHHhccCcccccccchHHHHHHHHH----------H-hc----------
Confidence 34566666666543 677777777 44577777777777644432222111 0 00
Q ss_pred hhhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhh
Q 000655 643 IDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGA 722 (1370)
Q Consensus 643 ~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~ 722 (1370)
.+ ....+-.++--..+.|.|++..||-.|-|.+|-+-.++. |...
T Consensus 76 ---------~~----------~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k------~~v~---------- 120 (675)
T KOG0212|consen 76 ---------IK----------DAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAK------GEVL---------- 120 (675)
T ss_pred ---------cc----------cHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhc------cCcc----------
Confidence 00 112344555566788999999999999999887655542 1110
Q ss_pred hhhcHHHHHHhccCCCCChhHHHHHHHHHHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH----hhhcccc
Q 000655 723 LSSLEDVIAILRSDASIDPSEVFNRIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFV----TKRGNEL 798 (1370)
Q Consensus 723 l~~l~d~~~~l~~~~~~~~~~~~~~i~~~i~~~L~~~el~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l----~~rg~~L 798 (1370)
..|+.|..++|+. -.|+ .+.+++++.++.-++ .++.+.+
T Consensus 121 --------------------~~Fn~iFdvL~kl----------------saDs-d~~V~~~aeLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 121 --------------------VYFNEIFDVLCKL----------------SADS-DQNVRGGAELLDRLIKDIVTESASTF 163 (675)
T ss_pred --------------------cchHHHHHHHHHH----------------hcCC-ccccccHHHHHHHHHHHhcccccccc
Confidence 0111122221111 1222 234566666655555 4455556
Q ss_pred cccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcC
Q 000655 799 SETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQH 878 (1370)
Q Consensus 799 ~e~dV~~I~~~I~~~L~~i~~~~~r~~~l~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d 878 (1370)
..++++..+..++..+ .+.+|+.++.=|+.|-..+.-+.+ +.+ |-=+|-++..|+..
T Consensus 164 ---sL~~~ipLL~eriy~~-n~~tR~flv~Wl~~Lds~P~~~m~-~yl------------------~~~ldGLf~~LsD~ 220 (675)
T KOG0212|consen 164 ---SLPEFIPLLRERIYVI-NPMTRQFLVSWLYVLDSVPDLEMI-SYL------------------PSLLDGLFNMLSDS 220 (675)
T ss_pred ---CHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhcCCcHHHH-hcc------------------hHHHHHHHHHhcCC
Confidence 2888999998888877 678999999999999888766654 322 01123478888876
Q ss_pred cccH----HHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccc---hHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH
Q 000655 879 AVLS----FLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDD---DILQAAILALTAFFRGGGKVGKKAVEKSYAPV 951 (1370)
Q Consensus 879 ~~l~----~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~---~~~laA~~aL~Ell~~~~~~~~~av~~~fp~L 951 (1370)
..-. ...|..+|.-..+.|..-+-++..+.. .++.++ ..-..|.-=+.|+.+.+ +..+.-++|.+
T Consensus 221 s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vl----v~~l~ss~~~iq~~al~Wi~efV~i~----g~~~l~~~s~i 292 (675)
T KOG0212|consen 221 SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVL----VPHLQSSEPEIQLKALTWIQEFVKIP----GRDLLLYLSGI 292 (675)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCccccCcccchhhc----cccccCCcHHHHHHHHHHHHHHhcCC----Ccchhhhhhhh
Confidence 6444 455666777777777653311111111 112222 22334455555666644 45666777777
Q ss_pred HHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHhHhhhcCchhHHHH
Q 000655 952 LAALTLQLGSCHGLASSGQHEPLRAILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTI 1031 (1370)
Q Consensus 952 f~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i 1031 (1370)
|.++|--+++.-.. + +-+ .+ ..-...+.+.+... ...++ -..++|
T Consensus 293 l~~iLpc~s~~e~~------~----i~~-~a----~~~n~~l~~l~s~~---~~~~~-----------------id~~~i 337 (675)
T KOG0212|consen 293 LTAILPCLSDTEEM------S----IKE-YA----QMVNGLLLKLVSSE---RLKEE-----------------IDYGSI 337 (675)
T ss_pred hhhcccCCCCCccc------c----HHH-HH----HHHHHHHHHHHhhh---hhccc-----------------cchHHH
Confidence 77665444221111 0 000 00 00000111111110 00000 246788
Q ss_pred HHHHhhhhcccccCcchHHHHHHHHhhhcCCch-hhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch
Q 000655 1032 CLILTKSINRQQRFQREAAAAALSEFVRYSGGF-DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1100 (1370)
Q Consensus 1032 ~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~-~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~ 1100 (1370)
++-+.+++.+..+.-|+++.-.+.-+.++..+. -.-.+++..+|.+.+.|++..|-.++|.=+++++..
T Consensus 338 i~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 338 IEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 899999999999999999998888877764332 222467889999999999999999999999999764
No 75
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.07 E-value=1.2 Score=52.45 Aligned_cols=232 Identities=15% Similarity=0.111 Sum_probs=134.7
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcch-----hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCC-cCCcchh
Q 000655 1074 ALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS-KDAVEPI 1147 (1370)
Q Consensus 1074 ~L~~~l~D~~~~VR~lsLrGLgnl~~~-----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~-~~~~~~~ 1147 (1370)
-....+.|-+...|.-+|+++-++..+ .+.....+++++++.++.....+-..-|..+++-+.=.++ ......+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 344555777899999999999877532 5667778999999999987655444556666666654444 2334445
Q ss_pred HHhHHhhhcCcCcCC--ChHHHHHHHHHHHHhhccCCCcchHHHHH--HHHhhhhHHHHhccCCChhHHHHHHHHHHhhc
Q 000655 1148 LLNLSVRLRNLQVSM--NVKMRRNAFAAFGALSNFGVGSQREAFLE--QIHAMLPRLILHIYDDDLSVRQACRNTLKQVA 1223 (1370)
Q Consensus 1148 l~~i~~~lrpffede--~~~vR~aAi~LfG~L~~~~~~~~~~~~~e--Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1223 (1370)
+-.+-..|++...|. ...+|.+++..+|-+.-++.+ ..+...+ +.+..+.....+=.|.+..++.+...+--.++
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~-d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGS-DEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 555555555555543 357899999999988765544 3333321 44454444444444444222222112222333
Q ss_pred hhhhh-hhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCch-
Q 000655 1224 PFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDD- 1301 (1370)
Q Consensus 1224 ~lL~w-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~- 1301 (1370)
.+-.| .+-..... ..+. +. +...+......+.|+...||-+|.-.|..+.-....
T Consensus 206 AL~aW~lLlt~~~~-----------~~~~-~~-----------~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~ 262 (309)
T PF05004_consen 206 ALSAWALLLTTLPD-----------SKLE-DL-----------LEEALPALSELLDSDDVDVRIAAGEAIALLYELARDH 262 (309)
T ss_pred HHHHHHHHHhcCCH-----------HHHH-HH-----------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 44555 33322211 0111 11 112233334488999999999999999988554332
Q ss_pred -hhhhhccHHHHHHHHHHHhccCCChhhHH
Q 000655 1302 -QHILSLFYTQVFGLLVVKLSQSADAIVRA 1330 (1370)
Q Consensus 1302 -~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~ 1330 (1370)
+.....+.+.+++.+.. |-.|..-.+-+
T Consensus 263 ~~~~~~~~~~~l~~~l~~-La~dS~K~~sK 291 (309)
T PF05004_consen 263 EEDFLYEDMEELLEQLRE-LATDSSKSRSK 291 (309)
T ss_pred cccccccCHHHHHHHHHH-HHHhccCccch
Confidence 12233477888888888 77776444433
No 76
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.7 Score=58.15 Aligned_cols=265 Identities=16% Similarity=0.154 Sum_probs=143.5
Q ss_pred CCCChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhccc---ccCcchHHHHHHH-HhhhcCCchhhHHHHHHHHHHh
Q 000655 1002 EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQ---QRFQREAAAAALS-EFVRYSGGFDSLLEQMVEALCR 1077 (1370)
Q Consensus 1002 ~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~---~~~~Ri~a~af~s-ELl~~~~~~~~l~~~~i~~L~~ 1077 (1370)
.|-+..+-+.-.+..|.-=+.|++. ..+-++.+-|+|-+. ...+.--+ |+++ .|+.-..+ +.++..|.+
T Consensus 348 ~WlskAtNWaKFtAtAsLGvIH~G~-~~~~~~ll~pYLP~~~~~~s~y~EGG-alyAlGLIhA~hG-----~~~~~yL~~ 420 (929)
T KOG2062|consen 348 DWLSKATNWAKFTATASLGVIHRGH-ENQAMKLLAPYLPKEAGEGSGYKEGG-ALYALGLIHANHG-----RGITDYLLQ 420 (929)
T ss_pred hHHhhcchHhhhhhhhhcceeeccc-cchHHHHhhhhCCccCCCCCCccccc-hhhhhhccccCcC-----ccHHHHHHH
Confidence 4664444444444445544566664 333445556666552 22232222 2332 45543322 225778888
Q ss_pred hcCC-CChhHHHHHhhhcc--CCcchhhhhhHHHHHHHHHhhcccCChhHHHHH--------------------------
Q 000655 1078 HVSD-ESPTVRGLCLRGLV--QIPSIHIHQYATQVLSVILALLDDLDESVQLTA-------------------------- 1128 (1370)
Q Consensus 1078 ~l~D-~~~~VR~lsLrGLg--nl~~~~v~~~~~~lL~all~~L~d~d~~V~leA-------------------------- 1128 (1370)
|+++ +++.||.=+.-||| +|+.... .+.+.+-.-|+. |+.|.-||
T Consensus 421 ~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-----eiYe~lKevLy~-D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ 494 (929)
T KOG2062|consen 421 QLKTAENEVVRHGACLGLGLAGMGSANE-----EIYEKLKEVLYN-DSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQ 494 (929)
T ss_pred HHHhccchhhhhhhhhhccchhcccccH-----HHHHHHHHHHhc-cchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhh
Confidence 8876 48999998888888 4444321 112222222322 22222222
Q ss_pred -----------HHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhh
Q 000655 1129 -----------VSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAML 1197 (1370)
Q Consensus 1129 -----------m~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~L 1197 (1370)
--+++.++-.. +++..++. ..+..|.++-+|..-+...+- ++++.... ..
T Consensus 495 ETQHeki~RGl~vGiaL~~ygr-qe~Ad~lI-------~el~~dkdpilR~~Gm~t~al--Ay~GTgnn---------ka 555 (929)
T KOG2062|consen 495 ETQHEKIIRGLAVGIALVVYGR-QEDADPLI-------KELLRDKDPILRYGGMYTLAL--AYVGTGNN---------KA 555 (929)
T ss_pred hhhHHHHHHHHHHhHHHHHhhh-hhhhHHHH-------HHHhcCCchhhhhhhHHHHHH--HHhccCch---------hh
Confidence 12222222111 11222222 223445677788776654432 44333332 33
Q ss_pred hHHHHhc--cCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 000655 1198 PRLILHI--YDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ 1275 (1370)
Q Consensus 1198 vpLLlHL--~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~ 1275 (1370)
|.=|||. .|.|.+|+.++-.|++-+. +.| . +.. -.+...
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl---------------~~d-p----~~~-~s~V~l------------------ 596 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVL---------------FRD-P----EQL-PSTVSL------------------ 596 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeE---------------ecC-h----hhc-hHHHHH------------------
Confidence 5556775 7999999999988876533 111 0 111 111122
Q ss_pred hhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHcccc
Q 000655 1276 AFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSH 1346 (1370)
Q Consensus 1276 y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~ 1346 (1370)
..+|-++++|..||+-+|...-.... ...++-|+. |-+||...||..|-.|++.+.-.++--
T Consensus 597 Lses~N~HVRyGaA~ALGIaCAGtG~--------~eAi~lLep-l~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMALGIACAGTGL--------KEAINLLEP-LTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred HhhhcChhhhhhHHHHHhhhhcCCCc--------HHHHHHHhh-hhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 33567899999999999955433332 344566788 899999999999999999987555443
No 77
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.41 Score=59.46 Aligned_cols=248 Identities=17% Similarity=0.165 Sum_probs=146.7
Q ss_pred HHHHHHHhhhhcccccCcchHHHHHHHHhhhcC-C------chhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-
Q 000655 1029 QTICLILTKSINRQQRFQREAAAAALSEFVRYS-G------GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1100 (1370)
Q Consensus 1029 ~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~-~------~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~- 1100 (1370)
+.+.+...+.|+..++..|.+|+-.+.=+-|-+ . .+..+.+.+...++..++|-+-.||+.|.+.||.+...
T Consensus 233 ~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS 312 (823)
T KOG2259|consen 233 KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS 312 (823)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH
Confidence 345566778888999999999975554444422 1 13456677889999999999999999999999987532
Q ss_pred -hh--hhhHHHHHH-------------HHHhhcc-----cCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcC
Q 000655 1101 -HI--HQYATQVLS-------------VILALLD-----DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ 1159 (1370)
Q Consensus 1101 -~v--~~~~~~lL~-------------all~~L~-----d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpff 1159 (1370)
++ .-+-+.++. .+++.-+ ..+++|.-|. .+.+..+-+--.-|-.+-.=|
T Consensus 313 ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee----------~d~~~~siI~sGACGA~VhGl 382 (823)
T KOG2259|consen 313 EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEE----------DDEEEESIIPSGACGALVHGL 382 (823)
T ss_pred HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhh----------ccccccccccccccceeeeec
Confidence 11 001111111 1222210 0012333333 111111111111223334568
Q ss_pred cCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccC
Q 000655 1160 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCF 1239 (1370)
Q Consensus 1160 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~ 1239 (1370)
|||-.+||.+|..-|+.|+-...+ |-...+..| +=-++|+-..||-.|-+||..++..+..
T Consensus 383 EDEf~EVR~AAV~Sl~~La~ssP~-----FA~~aldfL---vDMfNDE~~~VRL~ai~aL~~Is~~l~i----------- 443 (823)
T KOG2259|consen 383 EDEFYEVRRAAVASLCSLATSSPG-----FAVRALDFL---VDMFNDEIEVVRLKAIFALTMISVHLAI----------- 443 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCC-----cHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHHhee-----------
Confidence 999999999999999999974333 333333344 4446899999999999999998864221
Q ss_pred CcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHH
Q 000655 1240 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1319 (1370)
Q Consensus 1240 ~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~ 1319 (1370)
. ++-++.++..| .+..++||.++--+++.. ..++..+-.+=+..+...|..
T Consensus 444 ~-------eeql~~il~~L-------------------~D~s~dvRe~l~elL~~~--~~~d~~~i~m~v~~lL~~L~k- 494 (823)
T KOG2259|consen 444 R-------EEQLRQILESL-------------------EDRSVDVREALRELLKNA--RVSDLECIDMCVAHLLKNLGK- 494 (823)
T ss_pred c-------HHHHHHHHHHH-------------------HhcCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhh-
Confidence 1 23445555544 445677888776655522 222333322223444444554
Q ss_pred hccCCChhhHHHHHH
Q 000655 1320 LSQSADAIVRATCSS 1334 (1370)
Q Consensus 1320 Ll~Dpdp~VR~~Aa~ 1334 (1370)
-=+|.|...+|.+..
T Consensus 495 yPqDrd~i~~cm~~i 509 (823)
T KOG2259|consen 495 YPQDRDEILRCMGRI 509 (823)
T ss_pred CCCCcHHHHHHHHHH
Confidence 346888888876543
No 78
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=22 Score=47.82 Aligned_cols=204 Identities=17% Similarity=0.199 Sum_probs=135.3
Q ss_pred hhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhc--
Q 000655 1102 IHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN-- 1179 (1370)
Q Consensus 1102 v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~-- 1179 (1370)
+..+...+-+.+.+++++....+...+..+|..|++.++.+....+.-.|..-|-.. .+.+..-|..||.++=.+++
T Consensus 691 ~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~ 769 (1176)
T KOG1248|consen 691 VEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQ 769 (1176)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHH
Confidence 345567777888888888889999999999999999998777777777777777777 89999999999999877773
Q ss_pred -c-CCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHH
Q 000655 1180 -F-GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQ 1257 (1370)
Q Consensus 1180 -~-~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~ 1257 (1370)
+ -.|.++ .+.+.+..++.+--- --+..-...|.. +...... +++. ..++.
T Consensus 770 ~~~d~g~e~---~~~~lnefl~~Isag-l~gd~~~~~as~-Ivai~~i--------l~e~----------~~~ld----- 821 (1176)
T KOG1248|consen 770 SSLDDGNEP---ASAILNEFLSIISAG-LVGDSTRVVASD-IVAITHI--------LQEF----------KNILD----- 821 (1176)
T ss_pred hhhcccccc---hHHHHHHHHHHHHhh-hcccHHHHHHHH-HHHHHHH--------HHHH----------hcccc-----
Confidence 1 122222 122333333333222 001111222221 2222111 1110 00100
Q ss_pred HHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHH
Q 000655 1258 FVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLG 1337 (1370)
Q Consensus 1258 L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1337 (1370)
-+.+..++.+...|+.|..+.|+.+|+-|+--++.-+|..... -..+++...+-. |.+|-.--||.++-.=|.
T Consensus 822 -----~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~-~~~~~LL~sll~-ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 822 -----DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLS-PHLEELLPSLLA-LSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred -----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHh-hhHHHHHHHHHH-HHHhhhHHHHHHHHHHHH
Confidence 1234557777788999999999999999999888888855543 445788888888 899999999988777666
Q ss_pred HHHH
Q 000655 1338 WLLK 1341 (1370)
Q Consensus 1338 ~l~k 1341 (1370)
.|.+
T Consensus 895 kLir 898 (1176)
T KOG1248|consen 895 KLIR 898 (1176)
T ss_pred HHHH
Confidence 6653
No 79
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=94.81 E-value=2.3 Score=48.91 Aligned_cols=220 Identities=18% Similarity=0.170 Sum_probs=153.4
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcC--CChHH-------------HHHHH
Q 000655 1107 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS--MNVKM-------------RRNAF 1171 (1370)
Q Consensus 1107 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffed--e~~~v-------------R~aAi 1171 (1370)
+++.=+..+.|+...|..-++|+..|.+++.+++-.+ +-..+.....+|--.+ .-+.+ -..++
T Consensus 6 pQlFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~--~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl 83 (262)
T PF14225_consen 6 PQLFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDD--PDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTL 83 (262)
T ss_pred hHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCch--HHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHH
Confidence 6666677788887788999999999999999987543 2223333444554421 22333 35678
Q ss_pred HHHHHhhccC----CCcchHHHHHHHHhhhhHHHHhccCCCh----hHHHHHHHHHHhhchhhhh-hhhhhhccccCCcC
Q 000655 1172 AAFGALSNFG----VGSQREAFLEQIHAMLPRLILHIYDDDL----SVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSD 1242 (1370)
Q Consensus 1172 ~LfG~L~~~~----~~~~~~~~~eQv~~~LvpLLlHL~D~~~----~V~~ack~tL~~~a~lL~w-~l~~lf~~~~~~~~ 1242 (1370)
.++..|...- .|.....+.-.+..+++-++.|+.+++| .-+..+..++...|.--+. .+..++...+ .+
T Consensus 84 ~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya--~~ 161 (262)
T PF14225_consen 84 RLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYA--KG 161 (262)
T ss_pred HHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHH--hc
Confidence 8888888741 1223336777899999999999999992 4556677888888866666 6665555432 22
Q ss_pred CCCChHHHHHHHHHHHHHhC-cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhc
Q 000655 1243 HRSDYETFVRDLTRQFVQHF-PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLS 1321 (1370)
Q Consensus 1243 ~~l~~~~f~~~i~k~L~~~~-~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll 1321 (1370)
+--+-++|++.+++++-+.| |+.-..-+.=.++.+.+.-+-+|......+-.++++.+.+.- .+ .+++..+.+ |+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~-~dlispllr-lL 237 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HG-ADLISPLLR-LL 237 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cc-hHHHHHHHH-Hh
Confidence 22334899999999999988 787666666677888888889999999999999998875532 44 446777777 45
Q ss_pred cCCChhhHHHHHHHHHHHH
Q 000655 1322 QSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1322 ~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
+.+ .+.|||..+.
T Consensus 238 ~t~------~~~eAL~VLd 250 (262)
T PF14225_consen 238 QTD------LWMEALEVLD 250 (262)
T ss_pred CCc------cHHHHHHHHH
Confidence 543 4566666654
No 80
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.51 E-value=1 Score=59.44 Aligned_cols=240 Identities=16% Similarity=0.168 Sum_probs=145.8
Q ss_pred chHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCc-------chhhhhhHHHHHHHHHhhccc
Q 000655 1047 REAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP-------SIHIHQYATQVLSVILALLDD 1119 (1370)
Q Consensus 1047 Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~-------~~~v~~~~~~lL~all~~L~d 1119 (1370)
++.|.-.+.+|-..- ..+..++.++-.+.--+.|+.+.||..|+..|..+. ....+-+.++++|-+-..+.|
T Consensus 440 K~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 440 KLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhcc
Confidence 566665555554432 334556777777777889999999999999887552 235677889999999999988
Q ss_pred CC-hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc--CcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhh
Q 000655 1120 LD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL--QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM 1196 (1370)
Q Consensus 1120 ~d-~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf--fede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~ 1196 (1370)
.+ ..|+..=...|+.+-.. ..-++..++++|-- .++++.+ ....-.......++.+-|-+.
T Consensus 519 ~~~~~vRiayAsnla~LA~t------A~rFle~~q~~~~~g~~n~~nse----------t~~~~~~~~~~~~L~~~V~~~ 582 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKT------AYRFLELTQELRQAGMLNDPNSE----------TAPEQNYNTELQALHHTVEQM 582 (1431)
T ss_pred CccceehhhHHhhHHHHHHH------HHHHHHHHHHHHhcccccCcccc----------cccccccchHHHHHHHHHHHH
Confidence 44 44555545555555432 23356677776654 5555554 111111123445565556666
Q ss_pred hhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHh
Q 000655 1197 LPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQA 1276 (1370)
Q Consensus 1197 LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y 1276 (1370)
.+.|+ .|+.+-|+++=-..+..++.|+| +. -.+ +..++..+.|
T Consensus 583 v~sLl---sd~~~~Vkr~Lle~i~~LC~FFG--------k~------------------------ksN--D~iLshLiTf 625 (1431)
T KOG1240|consen 583 VSSLL---SDSPPIVKRALLESIIPLCVFFG--------KE------------------------KSN--DVILSHLITF 625 (1431)
T ss_pred HHHHH---cCCchHHHHHHHHHHHHHHHHhh--------hc------------------------ccc--cchHHHHHHH
Confidence 66665 48888887765555544444432 21 100 1123444568
Q ss_pred hcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHccc
Q 000655 1277 FEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1345 (1370)
Q Consensus 1277 ~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1345 (1370)
+++-.+.+|++=--=|-++.-+...+-. .|.+..-|+. =+.|+++.|=..|-+++.-|.|..+.
T Consensus 626 LNDkDw~LR~aFfdsI~gvsi~VG~rs~----seyllPLl~Q-~ltD~EE~Viv~aL~~ls~Lik~~ll 689 (1431)
T KOG1240|consen 626 LNDKDWRLRGAFFDSIVGVSIFVGWRSV----SEYLLPLLQQ-GLTDGEEAVIVSALGSLSILIKLGLL 689 (1431)
T ss_pred hcCccHHHHHHHHhhccceEEEEeeeeH----HHHHHHHHHH-hccCcchhhHHHHHHHHHHHHHhccc
Confidence 8988888998422112111112221111 1556777777 58899999999999999998876543
No 81
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=1.2 Score=55.54 Aligned_cols=291 Identities=13% Similarity=0.058 Sum_probs=160.1
Q ss_pred chhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhc--CCch-hhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-
Q 000655 1025 PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRY--SGGF-DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI- 1100 (1370)
Q Consensus 1025 ~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~--~~~~-~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~- 1100 (1370)
......|.-+..++++. +..+.+.|. ..-+++.. +... ...+....++=..+..+.+..+|-.++.-.++++..
T Consensus 112 ~~s~d~I~~~~~~~lr~-e~~~~vLa~-~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ 189 (823)
T KOG2259|consen 112 NGSTDAISDYASLELRA-ECSDHVLAQ-YLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSP 189 (823)
T ss_pred cCchhHHHHHHHHhhcc-cchhHHHHH-HHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccCC
Confidence 33456666666666653 333333332 22223221 2211 111222334445566788888999999988888753
Q ss_pred -hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhc
Q 000655 1101 -HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1179 (1370)
Q Consensus 1101 -~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1179 (1370)
.+..-.+.+...+..-..|.|..|.-.|+.||-.+-+.. .++. .+-.+......|++++||.+|+.|.--.++
T Consensus 190 ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~---~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn 263 (823)
T KOG2259|consen 190 SSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSK---ACYSRAVKHLSDDYEDVRKAAVQLVSVWGN 263 (823)
T ss_pred CcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccH---HHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 333334555666777777888888777777766554411 1121 222334467889999999999887655555
Q ss_pred cCCC-----cchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccc-----------------
Q 000655 1180 FGVG-----SQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSH----------------- 1237 (1370)
Q Consensus 1180 ~~~~-----~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~----------------- 1237 (1370)
.+.+ .....+.+-++..+..- +.|-+-.||-.+..+|+...+...-.+.+.+.|.
T Consensus 264 ~~p~~~e~e~~e~kl~D~aF~~vC~~---v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~ 340 (823)
T KOG2259|consen 264 RCPAPLERESEEEKLKDAAFSSVCRA---VRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKA 340 (823)
T ss_pred cCCCcccchhhhhhhHHHHHHHHHHH---HhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHH
Confidence 3322 23334555555555543 4688999998888888877755443333333222
Q ss_pred -----cCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHH----HHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhcc
Q 000655 1238 -----CFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMG----STIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF 1308 (1370)
Q Consensus 1238 -----~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~----~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~ 1308 (1370)
-|..|++.+.+.=-.+ ...+..++.-+ .-+.-+.+.-..+|.||+--.+.+....|.=-
T Consensus 341 l~s~GewSsGk~~~advpsee-------~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----- 408 (823)
T KOG2259|consen 341 LYSSGEWSSGKEWNADVPSEE-------DDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----- 408 (823)
T ss_pred HHhcCCcccCccccccCchhh-------ccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----
Confidence 2333222210000000 00000000000 00112344456789999988888888776222
Q ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1309 YTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1309 ~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
+..+.-|.+ |..|+...||-.|--||..+-
T Consensus 409 -~~aldfLvD-MfNDE~~~VRL~ai~aL~~Is 438 (823)
T KOG2259|consen 409 -VRALDFLVD-MFNDEIEVVRLKAIFALTMIS 438 (823)
T ss_pred -HHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Confidence 333455778 888888889888887755443
No 82
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.18 E-value=34 Score=47.26 Aligned_cols=467 Identities=13% Similarity=0.103 Sum_probs=228.0
Q ss_pred HHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhh---cCcHHHHHHHHHHHHHHhhccCchhHH
Q 000655 767 SCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVH---ITDKHLRLETLGAISCLAENTNSKIVF 843 (1370)
Q Consensus 767 ~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~---i~~~~~r~~~l~ai~~La~~h~~~vV~ 843 (1370)
+.-..++|...++..||-.++-.++-.+ ++.+.-+|.++.. -+.-.+|+.+++.++-....+++=..+
T Consensus 859 ~Vh~R~~DssasVREAaldLvGrfvl~~---------~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i 929 (1692)
T KOG1020|consen 859 AVHGRLNDSSASVREAALDLVGRFVLSI---------PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI 929 (1692)
T ss_pred HHHHhhccchhHHHHHHHHHHhhhhhcc---------HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH
Confidence 3444455555555555555555554322 2233334444332 234567888888887777666553222
Q ss_pred HHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcc-cHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHH
Q 000655 844 NEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAV-LSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDIL 922 (1370)
Q Consensus 844 ~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d~~-l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 922 (1370)
..+ |. +|-+-+..|.. .-..+.+.++..+=..++...+. +
T Consensus 930 ~~~--------ca-------------kmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~------------------~ 970 (1692)
T KOG1020|consen 930 VDM--------CA-------------KMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQ------------------P 970 (1692)
T ss_pred HHH--------HH-------------HHHHHhccchhHHHHHHHHHHHHHhccCCCccccc------------------H
Confidence 222 11 24455444544 55566666666555554443321 1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHH-HHHHH-HHHHHHhhcchHHHHHHHhc
Q 000655 923 QAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLR-AILTS-FQAFCECVGDLEMRKILARD 1000 (1370)
Q Consensus 923 laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~-~aleA-lk~ll~~~g~~~~~~~L~~~ 1000 (1370)
-.|.-...|...+. ....+....++||+..++..-.-- ++.+...|.- ..++- +.-+..|.-. ++.. ++.+
T Consensus 971 ~~~~kI~~~~~vv~--~~~d~~~~~~eqLl~~ilk~~~~~---~~~~~~~~v~~~~v~~~~~L~~~cl~~-~i~e-v~~~ 1043 (1692)
T KOG1020|consen 971 AKARKISLEVDVVM--SQVDLMNDWLEQLLDHILKFYLLK---TMKESVKPVALAKVTHVLNLLTHCLVE-KISE-VESD 1043 (1692)
T ss_pred HHHHhhHHHHHHHH--HHHHHhcChHHHHHHHHHHHHHhh---hhhhhhhHHHHhhcchHHHHHHHHHHH-HHHh-hhhH
Confidence 11122222222222 233555678899998876543211 2222233321 11111 1111111111 1111 1110
Q ss_pred --CCCCChhhHHHHHHHHHhHhhhcCchhHH-HHHHHHhhhhccc----ccCcchHHHHHHHHhhhc--CCchhhHHHHH
Q 000655 1001 --GEQNDKEKWINLIGDVAGCVSIKRPKEVQ-TICLILTKSINRQ----QRFQREAAAAALSEFVRY--SGGFDSLLEQM 1071 (1370)
Q Consensus 1001 --g~W~~~e~~~~gV~lLAr~m~~~~~~~~~-~i~~~L~~~L~s~----~~~~Ri~a~af~sELl~~--~~~~~~l~~~~ 1071 (1370)
..=++...+..-+..|+- .+.-+|..+- .=+..|.|||.+. .+.+-+-.++++-|-+=. +.-.+.+++.+
T Consensus 1044 ~~~~~~~~~~~~~~lstL~~-FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sL 1122 (1692)
T KOG1020|consen 1044 DMNEEESEVRLLAYLSTLFV-FSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASL 1122 (1692)
T ss_pred hhhcccchhHHHHHHHHHHH-HHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHH
Confidence 011145566666666543 4555665544 7788899999987 444444444444442211 01123444444
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhH
Q 000655 1072 VEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL 1151 (1370)
Q Consensus 1072 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i 1151 (1370)
=..|+..+---+.++-.-|+--+|.++.+ .- .+-.++..-.....+.++.
T Consensus 1123 Ee~L~~~i~k~g~a~V~~~vsCl~sl~~k----------------~~-~~~~~v~~cf~~~~k~le~------------- 1172 (1692)
T KOG1020|consen 1123 EEDLLKRIVKMGMATVVEAVSCLGSLATK----------------RT-DGAKVVKACFSCYLKLLEV------------- 1172 (1692)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHhh----------------hc-cchHHHHHHHHHHHHHHHH-------------
Confidence 44444443222222222222222222211 00 1122333333333333332
Q ss_pred HhhhcCcCcCC----ChHHHHHHHHHHHHhhcc-------CCCcchH----HHHHHHHhhhhHHHHhccCCChhHHHHHH
Q 000655 1152 SVRLRNLQVSM----NVKMRRNAFAAFGALSNF-------GVGSQRE----AFLEQIHAMLPRLILHIYDDDLSVRQACR 1216 (1370)
Q Consensus 1152 ~~~lrpffede----~~~vR~aAi~LfG~L~~~-------~~~~~~~----~~~eQv~~~LvpLLlHL~D~~~~V~~ack 1216 (1370)
+|.-++++ +...=.-++.+.|-++++ .+|+... .+.+ ..+..|..|.++.+-.+++.+-
T Consensus 1173 ---~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e---~v~~lL~~f~k~~~~~lR~~al 1246 (1692)
T KOG1020|consen 1173 ---IKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKE---KVLILLMYFSKDKDGELRRKAL 1246 (1692)
T ss_pred ---HHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHH---HHHHHHHHHHHhhhhHHHHHHH
Confidence 22333333 323334467777888873 2233322 3333 3566778889999999999888
Q ss_pred HHHHhhch----hhhh-hhhhhhccccCCcC---C-----------------------------------------CCCh
Q 000655 1217 NTLKQVAP----FMEI-GVYGIFNSHCFNSD---H-----------------------------------------RSDY 1247 (1370)
Q Consensus 1217 ~tL~~~a~----lL~w-~l~~lf~~~~~~~~---~-----------------------------------------~l~~ 1247 (1370)
.+|+..+. ++-. .+..++.+- +.++ . ..+-
T Consensus 1247 ~~Lg~~ci~hp~l~~~~~v~nly~~i-la~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~s 1325 (1692)
T KOG1020|consen 1247 INLGFICIQHPSLFTSREVLNLYDEI-LADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSS 1325 (1692)
T ss_pred HHHHHHHhhCchhhhhHHHHHHHHHH-HhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhccccc
Confidence 88887662 2222 332222221 1111 0 0111
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChh
Q 000655 1248 ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAI 1327 (1370)
Q Consensus 1248 ~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~ 1327 (1370)
+.+.++.|.. .++.|+.+.+.-+=+-+..+|.+|+..+-.+++..= +..-.-+..|+. |-.||.+.
T Consensus 1326 g~~s~~~~~~-------i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGL------VhP~~cvPtLIA-L~Tdp~~~ 1391 (1692)
T KOG1020|consen 1326 GMGSSDGVSA-------IMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGL------VHPVHCVPTLIA-LETDPSQA 1391 (1692)
T ss_pred ccccccchHH-------HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccC------CCccchhhhhee-ecCChHHH
Confidence 2222222222 456688888887777888999999999987776432 222334667888 88899999
Q ss_pred hHHHHHHHHHHHH
Q 000655 1328 VRATCSSSLGWLL 1340 (1370)
Q Consensus 1328 VR~~Aa~aL~~l~ 1340 (1370)
.|..|-+-|..+.
T Consensus 1392 ~r~~Ad~LL~eid 1404 (1692)
T KOG1020|consen 1392 IRHVADELLKEID 1404 (1692)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888777766
No 83
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.08 E-value=0.66 Score=55.88 Aligned_cols=193 Identities=15% Similarity=0.134 Sum_probs=135.7
Q ss_pred CChhhHHHHHHHHHhHhhhcCc----hhHHHHHHHHhhhhcc-cccCcchHHHHHHHHhhhcCCch-hhHHHHHHHHHHh
Q 000655 1004 NDKEKWINLIGDVAGCVSIKRP----KEVQTICLILTKSINR-QQRFQREAAAAALSEFVRYSGGF-DSLLEQMVEALCR 1077 (1370)
Q Consensus 1004 ~~~e~~~~gV~lLAr~m~~~~~----~~~~~i~~~L~~~L~s-~~~~~Ri~a~af~sELl~~~~~~-~~l~~~~i~~L~~ 1077 (1370)
+..+..-.|...|-..++.... ++...|+..++-.|.. .++..|..|.-.+.|.+.++... ..--+-++.-..+
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 3345555777777777776532 3588999999999988 77888999999999999876431 1112335556667
Q ss_pred hcCCCChhHHHHHhhhcc-CCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhc
Q 000655 1078 HVSDESPTVRGLCLRGLV-QIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1156 (1370)
Q Consensus 1078 ~l~D~~~~VR~lsLrGLg-nl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lr 1156 (1370)
..+|+.+.|-..|-+... -++.+.--.-...+-+.++. .|++....++..+.++.+.++.+.+..++..|+.-+-
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 778887766555555432 22222110111222333333 5888999999999999999999999999999999888
Q ss_pred CcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHH
Q 000655 1157 NLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRL 1200 (1370)
Q Consensus 1157 pffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpL 1200 (1370)
.-|+..+..||..|+.-+=++.+..+....++-.+|+-.+-.-|
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~L 498 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNL 498 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHH
Confidence 89999999999999999888888665566667666655444443
No 84
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.85 E-value=4 Score=51.46 Aligned_cols=140 Identities=17% Similarity=0.259 Sum_probs=100.9
Q ss_pred hhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhh-hHHHHHHHHH
Q 000655 1036 TKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQ-YATQVLSVIL 1114 (1370)
Q Consensus 1036 ~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~-~~~~lL~all 1114 (1370)
..+|+|+.-..+.++-.|++=|++.. ..+.+-+++.+.+-+...||+.-.+||.-+||++..++.. +..-+=.-++
T Consensus 80 V~LLss~kysEKqIGYl~is~L~n~n---~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLv 156 (938)
T KOG1077|consen 80 VNLLSSNKYSEKQIGYLFISLLLNEN---SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLV 156 (938)
T ss_pred HHHhhcCCccHHHHhHHHHHHHHhcc---hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHh
Confidence 46677888888888888888888865 4566777888999999999999999999999999864432 2222222223
Q ss_pred hhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCC
Q 000655 1115 ALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1183 (1370)
Q Consensus 1115 ~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~ 1183 (1370)
+| +..+-|.-.|..+|-+++..-+ +-+.+- .-+.|+-.+.+|..-.|=.+|+.+.-.+++.-..
T Consensus 157 S~--~~~~~vkqkaALclL~L~r~sp-Dl~~~~--~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~ 220 (938)
T KOG1077|consen 157 SG--SSMDYVKQKAALCLLRLFRKSP-DLVNPG--EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE 220 (938)
T ss_pred CC--cchHHHHHHHHHHHHHHHhcCc-cccChh--hHHHHHHHHhCccccceeeehHHHHHHHHHcCCH
Confidence 33 1123477888999999988743 222221 3467777899999999999999999999885433
No 85
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.85 E-value=3.3 Score=52.55 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHhHhhhcC--chhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHH---HHHHhhcCC
Q 000655 1007 EKWINLIGDVAGCVSIKR--PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMV---EALCRHVSD 1081 (1370)
Q Consensus 1007 e~~~~gV~lLAr~m~~~~--~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i---~~L~~~l~D 1081 (1370)
+.-++|.-.+-.-|..+. |..+-.|..+.+|. ...+-.|+ .-+|-|++..-..+..+++.++ +...+-+++
T Consensus 35 ~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps--~~~elKKL--ly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQH 110 (948)
T KOG1058|consen 35 EVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPS--RNHELKKL--LYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQH 110 (948)
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHhheeecc--CchHHHHH--HHHHHHHccccCCCcccHHHHHHHHHHHhhhccC
Confidence 444455554455454332 22233333333443 22222232 3467788876544344444433 778889999
Q ss_pred CChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHh
Q 000655 1082 ESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1136 (1370)
Q Consensus 1082 ~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL 1136 (1370)
||.-||.--+|=|..+-.. .+...+.|++.+.|+....-|+--|+.++..|.
T Consensus 111 PNEyiRG~TLRFLckLkE~---ELlepl~p~IracleHrhsYVRrNAilaifsIy 162 (948)
T KOG1058|consen 111 PNEYIRGSTLRFLCKLKEP---ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIY 162 (948)
T ss_pred chHhhcchhhhhhhhcCcH---HHhhhhHHHHHHHHhCcchhhhhhhheeehhHH
Confidence 9999999999977776542 223444555555555444444444444444443
No 86
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=7.2 Score=51.23 Aligned_cols=313 Identities=15% Similarity=0.170 Sum_probs=181.6
Q ss_pred hhHHHHHHHHHhHhhhcCc--hhH-HHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcC-CC
Q 000655 1007 EKWINLIGDVAGCVSIKRP--KEV-QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVS-DE 1082 (1370)
Q Consensus 1007 e~~~~gV~lLAr~m~~~~~--~~~-~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~-D~ 1082 (1370)
++-..-|+-|++.+.+..+ .++ .=++.++.|.++|++.--|.-|+.+++.+-.--......+..++..-.+.+. |+
T Consensus 436 dGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~ 515 (1010)
T KOG1991|consen 436 DGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDN 515 (1010)
T ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCC
Confidence 4444566677777766655 233 2467788999999999999999999998864322222333334444444444 88
Q ss_pred ChhHHHHHhhhccCCcc------hhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhc
Q 000655 1083 SPTVRGLCLRGLVQIPS------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLR 1156 (1370)
Q Consensus 1083 ~~~VR~lsLrGLgnl~~------~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lr 1156 (1370)
+.-||.=|.-||-..-. .+++.+.+.++..++....+.+.++.-..|.. ++..-+ +.+.|+-+.+|..|.
T Consensus 516 ~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~---iV~~fs-eElsPfA~eL~q~La 591 (1010)
T KOG1991|consen 516 ELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEK---IVCKFS-EELSPFAVELCQNLA 591 (1010)
T ss_pred cCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHH---HHHHHH-HhhchhHHHHHHHHH
Confidence 99999988888775532 26888999999999998887765555444433 333322 346788888888885
Q ss_pred CcC-------cCCChHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHhhhhHHHHhccCCChh-HHHH-HHH----HH
Q 000655 1157 NLQ-------VSMNVKMRRNAFAAFGALSNF----GVGSQREAFLEQIHAMLPRLILHIYDDDLS-VRQA-CRN----TL 1219 (1370)
Q Consensus 1157 pff-------ede~~~vR~aAi~LfG~L~~~----~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~-V~~a-ck~----tL 1219 (1370)
.-| +++.+..-..|+.+-|=|... ..-.....+..|+...+.|.+-|..+.+.. |-+. +.. |+
T Consensus 592 ~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~ 671 (1010)
T KOG1991|consen 592 ETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF 671 (1010)
T ss_pred HHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 444 334444555566665655441 111234447888999999999998877653 3332 222 11
Q ss_pred --Hhhchhhhh----hhhhhhccccCCcCCCCCh-HHHHHHHHHHH------HHhCcchHHHHHHHHHHhhcCC---Chh
Q 000655 1220 --KQVAPFMEI----GVYGIFNSHCFNSDHRSDY-ETFVRDLTRQF------VQHFPSRIDSYMGSTIQAFEAP---WPI 1283 (1370)
Q Consensus 1220 --~~~a~lL~w----~l~~lf~~~~~~~~~~l~~-~~f~~~i~k~L------~~~~~~~~~~~l~~~l~y~kS~---~~~ 1283 (1370)
..++|- =| .+-++|++. +.+| .+++-.+-.+. ..++|+.......-+-.-+-|. ..+
T Consensus 672 ~~~~Isp~-mW~ll~li~e~~~~~------~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d 744 (1010)
T KOG1991|consen 672 LSKEISPI-MWGLLELILEVFQDD------GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSD 744 (1010)
T ss_pred hhcccCHH-HHHHHHHHHHHHhhh------hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHH
Confidence 123332 23 224555442 2333 33322222221 3456666665555555555442 233
Q ss_pred HHHHHHHHHhhhhccCchhhhhhccHHH-HHHHHHHHhcc-CCChhhHHHHHH
Q 000655 1284 IQANAIYFSSSILCLCDDQHILSLFYTQ-VFGLLVVKLSQ-SADAIVRATCSS 1334 (1370)
Q Consensus 1284 IR~aA~~fiG~l~~~~~~~~~~~~~~e~-l~~~L~~~Ll~-Dpdp~VR~~Aa~ 1334 (1370)
++ .|+.+++.++.+... ...+ ..+- +--++.. +++ +.+...|..+-+
T Consensus 745 ~~-~a~kLle~iiL~~kg-~~dq-~iplf~~~a~~~-l~~~~e~s~~~~~~le 793 (1010)
T KOG1991|consen 745 CE-SACKLLEVIILNCKG-LLDQ-YIPLFLELALSR-LTREVETSELRVMLLE 793 (1010)
T ss_pred HH-HHHHHHHHHHHHhcC-cHhh-HhHHHHHHHHHH-HhccccchHHHHHHHH
Confidence 44 488888988776664 2211 1122 2223444 444 678888876543
No 87
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.18 E-value=38 Score=44.53 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhH
Q 000655 782 GAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIV 842 (1370)
Q Consensus 782 ~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i~~~~~r~~~l~ai~~La~~h~~~vV 842 (1370)
-++-++.+++..-|.++.+. +..|++.+..+|.......+.+.++-+..-|....++.++
T Consensus 728 ~VG~lV~tLit~a~~el~~n-~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l 787 (1005)
T KOG2274|consen 728 FVGPLVLTLITHASSELGPN-LDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLL 787 (1005)
T ss_pred HHhHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHH
Confidence 45668999999999999666 9999999999999999999999999999988888877766
No 88
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.16 E-value=2.7 Score=50.86 Aligned_cols=184 Identities=16% Similarity=0.156 Sum_probs=121.0
Q ss_pred ccCcchHHHHHHHHhhhc--CCchhhHHHHHHHHHHhhcCC-CChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhh
Q 000655 1043 QRFQREAAAAALSEFVRY--SGGFDSLLEQMVEALCRHVSD-ESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILAL 1116 (1370)
Q Consensus 1043 ~~~~Ri~a~af~sELl~~--~~~~~~l~~~~i~~L~~~l~D-~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~ 1116 (1370)
...+|--|..=+-+++.. ..+++.....++..+.+-+.| .++..|++|||-|+.|... +...+....+...++.
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 344455555544444432 234555556677888888899 8999999999999998755 4445566666777777
Q ss_pred cccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhh
Q 000655 1117 LDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM 1196 (1370)
Q Consensus 1117 L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~ 1196 (1370)
=.|.++.|+-.|-....+++....+. .-+.+|+..|.. +++..=.+++...-.+.. +-..+.+..+|-..
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~---~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e---~l~~EeL~~ll~di 449 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPL---QCIVNISPLILT----ADEPRAVAVIKMLTKLFE---RLSAEELLNLLPDI 449 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCch---hHHHHHhhHHhc----CcchHHHHHHHHHHHHHh---hcCHHHHHHhhhhh
Confidence 77778889999999888888765432 233445444444 444444556644444443 23456666666666
Q ss_pred hhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhcc
Q 000655 1197 LPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNS 1236 (1370)
Q Consensus 1197 LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~~ 1236 (1370)
.+.++---.-....|||+|-|.|-....-+|. .+.--+..
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~ 490 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQ 490 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhh
Confidence 66666556666889999999999988888886 55444433
No 89
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.15 E-value=28 Score=42.93 Aligned_cols=325 Identities=18% Similarity=0.148 Sum_probs=183.3
Q ss_pred HHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcch-HHHHHHhhHHH
Q 000655 873 HAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVG-KKAVEKSYAPV 951 (1370)
Q Consensus 873 ~ala~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~-~~av~~~fp~L 951 (1370)
-+++.++.+...+..+|+.+|......+.. .-.+.++..+|+.++....... .....++|.+.
T Consensus 27 ~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~----------------~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~ 90 (415)
T PF12460_consen 27 AALSTSPQILETLSIRLLNKLSIVCQSESS----------------SDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRI 90 (415)
T ss_pred HHHHCChhHHHHHHHHHHHHHHHHhcCCCC----------------hHHHHHHHHHHHHHHHhcccccccchHHHHHHhH
Confidence 345568888888888888888765432210 1236788899999988763232 23566666664
Q ss_pred HHHHHHHhhhcccCCCCCCCCh-----HHHHHHHHHHHHHhhcchHHHHHHHh-------cCCCC-----ChhhHHHHHH
Q 000655 952 LAALTLQLGSCHGLASSGQHEP-----LRAILTSFQAFCECVGDLEMRKILAR-------DGEQN-----DKEKWINLIG 1014 (1370)
Q Consensus 952 f~aLL~ql~~~~~~~~~~~~~P-----~~~aleAlk~ll~~~g~~~~~~~L~~-------~g~W~-----~~e~~~~gV~ 1014 (1370)
+.-.+............+ .++ .+..+...-..+......++.+.+-. ...+. ..+.-..-+.
T Consensus 91 lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (415)
T PF12460_consen 91 LVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVI 169 (415)
T ss_pred HHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHH
Confidence 444444443322211111 111 11111111111111222222111110 01111 1112333444
Q ss_pred HHHhHhhhcCc----hhHHHHHHHHhhhhccc-ccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhc-CCCChhHHH
Q 000655 1015 DVAGCVSIKRP----KEVQTICLILTKSINRQ-QRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHV-SDESPTVRG 1088 (1370)
Q Consensus 1015 lLAr~m~~~~~----~~~~~i~~~L~~~L~s~-~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l-~D~~~~VR~ 1088 (1370)
+.+..++--++ +....++..+.....+. .+..|..+.-.++-++|...... .++..++.+.... .+.++.-|.
T Consensus 170 l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 170 LFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred HHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hHHHHHHHHHhhhcccCCcchhH
Confidence 55554443221 35566777777775554 47779999999999999843322 3445555555555 667788888
Q ss_pred HHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCc-------CCcc-----hhHHhHHh
Q 000655 1089 LCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK-------DAVE-----PILLNLSV 1153 (1370)
Q Consensus 1089 lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~-------~~~~-----~~l~~i~~ 1153 (1370)
-+++.++++..+ +.++....+++.++..|++ +.+-..|..+++-++...+. -.++ .++..+..
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 888988888765 4456677788888998886 55666666666666654211 1111 23445555
Q ss_pred hhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccC-CChhHHHHHHHHHHh
Q 000655 1154 RLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYD-DDLSVRQACRNTLKQ 1221 (1370)
Q Consensus 1154 ~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D-~~~~V~~ack~tL~~ 1221 (1370)
++-..|.+-+++.|..-..++..+.+... +..+..++ ..+.||++.-=| +|++|+.++=.||..
T Consensus 327 ~L~~~~~~~~~~~k~~yL~ALs~ll~~vP---~~vl~~~l-~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 327 KLLEGFKEADDEIKSNYLTALSHLLKNVP---KSVLLPEL-PTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhhCC---HHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 55666777777788888999999998543 45555554 446676665444 466677766555544
No 90
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=1 Score=57.71 Aligned_cols=169 Identities=11% Similarity=0.118 Sum_probs=105.4
Q ss_pred HHHHHHHhHhhh-cCch--hHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHH
Q 000655 1011 NLIGDVAGCVSI-KRPK--EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVR 1087 (1370)
Q Consensus 1011 ~gV~lLAr~m~~-~~~~--~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR 1087 (1370)
.|++.+++-+-+ ++++ .-.+++...+.+|+..+..-..-|+--++-|-.-- .+..++.+.+.-.+.-+.+-+..|
T Consensus 746 ~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy--~e~il~dL~e~Y~s~k~k~~~d~~ 823 (982)
T KOG4653|consen 746 YGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY--PEDILPDLSEEYLSEKKKLQTDYR 823 (982)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc--chhhHHHHHHHHHhcccCCCccce
Confidence 456665554332 2333 23467777778888777777777776666653221 122222223222222222212333
Q ss_pred HHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc-CcCCC
Q 000655 1088 GLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL-QVSMN 1163 (1370)
Q Consensus 1088 ~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf-fede~ 1163 (1370)
...=.+++++... -+.+|...++..+|+|.+|+|..-++.+|..|+.+...+..+ ++.++.+++..|-.. -.|.+
T Consensus 824 lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~-vsd~~~ev~~~Il~l~~~d~s 902 (982)
T KOG4653|consen 824 LKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ-VSDFFHEVLQLILSLETTDGS 902 (982)
T ss_pred ehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHccCCc
Confidence 3222555555432 346788899999999999998889999999999999887644 344666665554211 12888
Q ss_pred hHHHHHHHHHHHHhhccCC
Q 000655 1164 VKMRRNAFAAFGALSNFGV 1182 (1370)
Q Consensus 1164 ~~vR~aAi~LfG~L~~~~~ 1182 (1370)
..||.||+.+..++.+..+
T Consensus 903 ~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 903 VLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred hhhHHHHHHHHHHHHhccc
Confidence 9999999999999998433
No 91
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.48 E-value=3.8 Score=54.00 Aligned_cols=185 Identities=14% Similarity=0.144 Sum_probs=132.1
Q ss_pred hhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 000655 1115 ALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH 1194 (1370)
Q Consensus 1115 ~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~ 1194 (1370)
..+.+++=.-+.||+.+|-.++..-.........--++.-++--+-|-|-.|-..|...++.+++ ..+..|+.-+.
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~----~lr~~~~~~~~ 335 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK----KLRPLFRKYAK 335 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH----hcchhhHHHHH
Confidence 33444455567777777777776655122222222333344556788899999999999999997 34556889999
Q ss_pred hhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 000655 1195 AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTI 1274 (1370)
Q Consensus 1195 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l 1274 (1370)
..+++++=.+.|..+.++.+.+.++...+.. ..+..+....+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--------------------------------------~~l~~~~~~I~ 377 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNS--------------------------------------TPLSKMSEAIL 377 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhc--------------------------------------ccHHHHHHHHH
Confidence 9999999999999999998887777665540 11122223335
Q ss_pred HhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000655 1275 QAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1342 (1370)
Q Consensus 1275 ~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1342 (1370)
.+++...+.+|.--..|.+-.+..+++.-...-....++.++.. .-.|-++.||..|.++++-+.|.
T Consensus 378 e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~-~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 378 EALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIK-HINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhh-hccCCcHHHHHHHHHHHHHHHHH
Confidence 57888888899887777776666666444444566889999999 89999999999999999988754
No 92
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.35 E-value=1 Score=59.03 Aligned_cols=190 Identities=17% Similarity=0.165 Sum_probs=131.4
Q ss_pred hhhcccccCcchHHHHHHHHhhhcCCc--hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHH
Q 000655 1037 KSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLS 1111 (1370)
Q Consensus 1037 ~~L~s~~~~~Ri~a~af~sELl~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~ 1111 (1370)
.-+.|+.=..|.-|+.-+...+..+.. ......-+.-.+.-.+.|.|-.|-..++.-|.-|+.. ..+.|...+.+
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p 339 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFP 339 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcc
Confidence 334444445555555555554444331 0011111223455577999999999999987777643 57889999999
Q ss_pred HHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHH
Q 000655 1112 VILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLE 1191 (1370)
Q Consensus 1112 all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~e 1191 (1370)
++++.+.+.-..++-.+..++-.+++.-. +. .+..-|--+..+-++.+|.--..+|+...+.-+. +-.+++
T Consensus 340 ~lld~lkekk~~l~d~l~~~~d~~~ns~~---l~----~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~--~~~~~~ 410 (815)
T KOG1820|consen 340 SLLDRLKEKKSELRDALLKALDAILNSTP---LS----KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP--KTVEKE 410 (815)
T ss_pred hHHHHhhhccHHHHHHHHHHHHHHHhccc---HH----HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC--cCcchh
Confidence 99999998777766666666666666322 22 2333334577889999999999999998874332 456777
Q ss_pred HHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhc
Q 000655 1192 QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFN 1235 (1370)
Q Consensus 1192 Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~ 1235 (1370)
-++....-++-|.+|-+++||+|+..++..+-..+|- ....++.
T Consensus 411 t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~ 455 (815)
T KOG1820|consen 411 TVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK 455 (815)
T ss_pred hHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888999999999999999999999999888877776 4444443
No 93
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.31 E-value=15 Score=47.36 Aligned_cols=270 Identities=15% Similarity=0.179 Sum_probs=157.7
Q ss_pred HHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHH
Q 000655 1034 ILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVI 1113 (1370)
Q Consensus 1034 ~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~al 1113 (1370)
.|.++|+|..+.-+.=|+-++..++-+-.+-..+.-.++.. ....|+.||+|.-==|-.-|..+-+ ..---++.+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKN----Vaskn~EVKkLVyvYLlrYAEeqpd-LALLSIntf 113 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKN----VASKNIEVKKLVYVYLLRYAEEQPD-LALLSINTF 113 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH----hhccCHHHHHHHHHHHHHHhhcCCC-ceeeeHHHH
Confidence 45567778888888888877777777644433333333333 3456778888775444433322100 000114556
Q ss_pred HhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHH
Q 000655 1114 LALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQI 1193 (1370)
Q Consensus 1114 l~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv 1193 (1370)
=.+|.|++..++.-|+++|+.|= +..+-.-+-..++..-.|..+-||..|..+.-+|=.... .+++ |+
T Consensus 114 Qk~L~DpN~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~----qL 181 (968)
T KOG1060|consen 114 QKALKDPNQLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQKD----QL 181 (968)
T ss_pred HhhhcCCcHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhHH----HH
Confidence 67899999999999999999863 223333344566788899999999999988887765321 2333 33
Q ss_pred HhhhhHHHHhccCCChhHHHHHHHHHHhhchh----hhhhhhhhhc----cccCCcCCCCChHHHHHHHHHHHHHhCcch
Q 000655 1194 HAMLPRLILHIYDDDLSVRQACRNTLKQVAPF----MEIGVYGIFN----SHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1265 (1370)
Q Consensus 1194 ~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l----L~w~l~~lf~----~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~ 1265 (1370)
...+--| |.|..|-|+.++-.||..|+|- ++--.+.+.+ -..|+. -..++.+.+|--+.+|+-
T Consensus 182 ~e~I~~L---LaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQ------vvlI~mL~RYAR~~l~~P 252 (968)
T KOG1060|consen 182 EEVIKKL---LADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQ------VVLINMLTRYARHQLPDP 252 (968)
T ss_pred HHHHHHH---hcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhH------HHHHHHHHHHHHhcCCCc
Confidence 3333222 4699999999999999999972 2211111111 112322 234555666655555443
Q ss_pred --------------------------------HHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHH
Q 000655 1266 --------------------------------IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVF 1313 (1370)
Q Consensus 1266 --------------------------------~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~ 1313 (1370)
+..++.++-..+.|..+.+=-|+| +...+..|..+ ...+.
T Consensus 253 ~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~a---ql~y~lAP~~~-----~~~i~ 324 (968)
T KOG1060|consen 253 TVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVA---QLFYHLAPKNQ-----VTKIA 324 (968)
T ss_pred cccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHH---hHHHhhCCHHH-----HHHHH
Confidence 345666666677777775554444 23333334333 25567
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHH
Q 000655 1314 GLLVVKLSQSADAIVRATCSSSLGWL 1339 (1370)
Q Consensus 1314 ~~L~~~Ll~Dpdp~VR~~Aa~aL~~l 1339 (1370)
++|.. |++ ..+.|+-..-+.+..+
T Consensus 325 kaLvr-LLr-s~~~vqyvvL~nIa~~ 348 (968)
T KOG1060|consen 325 KALVR-LLR-SNREVQYVVLQNIATI 348 (968)
T ss_pred HHHHH-HHh-cCCcchhhhHHHHHHH
Confidence 78888 555 3345555444444333
No 94
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=92.19 E-value=1.1 Score=51.64 Aligned_cols=267 Identities=16% Similarity=0.105 Sum_probs=137.9
Q ss_pred Hhhhh-cccccCcchHHHHHHHHhhhcCC-chhhHHHH-HHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhH--H
Q 000655 1035 LTKSI-NRQQRFQREAAAAALSEFVRYSG-GFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYA--T 1107 (1370)
Q Consensus 1035 L~~~L-~s~~~~~Ri~a~af~sELl~~~~-~~~~l~~~-~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~~~--~ 1107 (1370)
++.+| +...+.-..-|++.++..-.-.. -...+.+. .+-.+.+-+.+++..||.-++=+|||++-. ..+-|+ .
T Consensus 119 fvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~ 198 (526)
T COG5064 119 FVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC 198 (526)
T ss_pred HHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc
Confidence 33344 33334445677777777544211 11222222 455677778999999999999999999732 111111 1
Q ss_pred HHHHHHHhhccc-------------------------CChhHHHHHHHHHHHHhccCCcCCcch----------------
Q 000655 1108 QVLSVILALLDD-------------------------LDESVQLTAVSCLLTILKSSSKDAVEP---------------- 1146 (1370)
Q Consensus 1108 ~lL~all~~L~d-------------------------~d~~V~leAm~~L~~lL~~l~~~~~~~---------------- 1146 (1370)
.+|+.++..|.. +|...+-.|+..|.|++...+.+.+..
T Consensus 199 galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i 278 (526)
T COG5064 199 GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKI 278 (526)
T ss_pred CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHH
Confidence 111111111111 112244455555555555444332221
Q ss_pred ---hHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHH------HHhhhhHHHHhccCCChhHHHHHHH
Q 000655 1147 ---ILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ------IHAMLPRLILHIYDDDLSVRQACRN 1217 (1370)
Q Consensus 1147 ---~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ------v~~~LvpLLlHL~D~~~~V~~ack~ 1217 (1370)
+=..+.-||--++.+|+..|..-|++.-|.++. |.+ ...| ++..+.|||-| +-..+++.+-.
T Consensus 279 ~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT---G~D---~QTqviI~~G~L~a~~~lLs~---~ke~irKEaCW 349 (526)
T COG5064 279 QAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT---GSD---DQTQVIINCGALKAFRSLLSS---PKENIRKEACW 349 (526)
T ss_pred HHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee---cCc---cceehheecccHHHHHHHhcC---hhhhhhhhhhe
Confidence 112344566677888999999999999998876 322 1223 34566666544 44478876655
Q ss_pred HHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhc
Q 000655 1218 TLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILC 1297 (1370)
Q Consensus 1218 tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~ 1297 (1370)
|+-.+..==--...++ +..+-----..+.+.- .-.+|..|+|-|.-...
T Consensus 350 TiSNITAGnteqiqav-------------------------id~nliPpLi~lls~a------e~k~kKEACWAisNats 398 (526)
T COG5064 350 TISNITAGNTEQIQAV-------------------------IDANLIPPLIHLLSSA------EYKIKKEACWAISNATS 398 (526)
T ss_pred eecccccCCHHHHHHH-------------------------HhcccchHHHHHHHHH------HHHHHHHHHHHHHhhhc
Confidence 5544332000011222 2211000111122222 33488889998874433
Q ss_pred ---cCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHc
Q 000655 1298 ---LCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1343 (1370)
Q Consensus 1298 ---~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1343 (1370)
..| +.+..+=....++.|.. |+.=.|-.|-..|-.++..+.|.-
T Consensus 399 gg~~~P-D~iryLv~qG~IkpLc~-~L~~~dNkiiev~LD~~eniLk~G 445 (526)
T COG5064 399 GGLNRP-DIIRYLVSQGFIKPLCD-LLDVVDNKIIEVALDAIENILKVG 445 (526)
T ss_pred cccCCc-hHHHHHHHccchhHHHH-HHhccCccchhhhHHHHHHHHhhh
Confidence 233 33433323346667777 666566666667777777777653
No 95
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.97 E-value=41 Score=42.03 Aligned_cols=288 Identities=15% Similarity=0.139 Sum_probs=159.5
Q ss_pred hhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCc--hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch---
Q 000655 1026 KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--- 1100 (1370)
Q Consensus 1026 ~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~--~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--- 1100 (1370)
..+++++.++-..+++++-.+|-+|+-.|...+.-|.. ......+.+-.+.+-.+|++--|..-..-.+|.|+.+
T Consensus 362 ~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 362 KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999888888887643 2334455666666777899999988888888988764
Q ss_pred --hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCc------CCcchhHHhHHhhh---cCcCcCCChHHHHH
Q 000655 1101 --HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK------DAVEPILLNLSVRL---RNLQVSMNVKMRRN 1169 (1370)
Q Consensus 1101 --~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~------~~~~~~l~~i~~~l---rpffede~~~vR~a 1169 (1370)
.-..|.+....+++-||.|- ..+...--...-++..++.+ ..+.++...|...| ...- +.....|.+
T Consensus 442 ~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~-~Ne~n~R~s 519 (858)
T COG5215 442 IISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA-LNESNLRVS 519 (858)
T ss_pred hcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh-ccchhHHHH
Confidence 22345567788888888773 22222222222222222222 12334444443333 1222 334578999
Q ss_pred HHHHHHHhhccCCCcchHHH---H----HHHHhhhhH--HHHhccCCCh---------hHHHHHHHHHHhhchhhhh---
Q 000655 1170 AFAAFGALSNFGVGSQREAF---L----EQIHAMLPR--LILHIYDDDL---------SVRQACRNTLKQVAPFMEI--- 1228 (1370)
Q Consensus 1170 Ai~LfG~L~~~~~~~~~~~~---~----eQv~~~Lvp--LLlHL~D~~~---------~V~~ack~tL~~~a~lL~w--- 1228 (1370)
+|+.+|.|.-++...-.+.+ . +.+-+++-- =++-++|.-. .|-.+--++.++ -.+.
T Consensus 520 ~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~---~ie~v~D 596 (858)
T COG5215 520 LFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR---DIEDVED 596 (858)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC---CcccHHH
Confidence 99999999987653211110 0 001111100 0122222110 111111111111 0011
Q ss_pred hhhhhhccccCCc-CCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhh----cCCChhHHHHHHHHHhhhhccCchhh
Q 000655 1229 GVYGIFNSHCFNS-DHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAF----EAPWPIIQANAIYFSSSILCLCDDQH 1303 (1370)
Q Consensus 1229 ~l~~lf~~~~~~~-~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~----kS~~~~IR~aA~~fiG~l~~~~~~~~ 1303 (1370)
.+-.+|-+. ++. +...-+++.+..| ..|+.+..++...|+..-++|+ +.....+-..|+-|+|-+.+.+..+.
T Consensus 597 ~lm~Lf~r~-les~~~t~~~~dV~~aI-sal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df 674 (858)
T COG5215 597 QLMELFIRI-LESTKPTTAFGDVYTAI-SALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF 674 (858)
T ss_pred HHHHHHHHH-HhccCCchhhhHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH
Confidence 122222221 111 1233345555444 3455555556666666666654 44556688889999999999888766
Q ss_pred hhhccHHHHHHHHHHHhccC
Q 000655 1304 ILSLFYTQVFGLLVVKLSQS 1323 (1370)
Q Consensus 1304 ~~~~~~e~l~~~L~~~Ll~D 1323 (1370)
+ ++.+.+.+.|.. .++.
T Consensus 675 ~--~y~d~~ms~LvQ-~lss 691 (858)
T COG5215 675 N--IYADVLMSSLVQ-CLSS 691 (858)
T ss_pred H--HHHHHHHHHHHH-HhcC
Confidence 5 344666666666 4443
No 96
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.62 E-value=0.089 Score=39.84 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=20.3
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcc
Q 000655 1072 VEALCRHVSDESPTVRGLCLRGLVQIPS 1099 (1370)
Q Consensus 1072 i~~L~~~l~D~~~~VR~lsLrGLgnl~~ 1099 (1370)
+..+.+.++||++.||..|+++||+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4566777788888888888888887653
No 97
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=91.50 E-value=3.7 Score=53.28 Aligned_cols=213 Identities=15% Similarity=0.120 Sum_probs=145.7
Q ss_pred CCC-ChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcC-Cc--------hhhHHHH-
Q 000655 1002 EQN-DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS-GG--------FDSLLEQ- 1070 (1370)
Q Consensus 1002 ~W~-~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~-~~--------~~~l~~~- 1070 (1370)
||. ..+--.++..-+.++++-.+.++-..+...++..|++++-.. .+| -.|+=++..+ .. .+.+.++
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~-~aa-~~fsiim~D~~~~~~r~~~a~~riLykQR 863 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGS-PAA-KLFSIIMSDSNPLLKRKGHAEPRILYKQR 863 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCccccc-hHH-HhhHhhhccChHHhhhccccchhHHHHHH
Confidence 564 456666777777788877777788899999999998854332 222 2333333321 11 1223333
Q ss_pred ----HHHHHHhhcCCCChhHHHHHhhhccCCc----chhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccC---
Q 000655 1071 ----MVEALCRHVSDESPTVRGLCLRGLVQIP----SIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS--- 1139 (1370)
Q Consensus 1071 ----~i~~L~~~l~D~~~~VR~lsLrGLgnl~----~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l--- 1139 (1370)
++-.|.+...-....+|..=+.||+++. ..-+-...+.++|-++.+|+=.|-.|.+.+..++..++...
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 6677888887666778888888887553 33456677999999999999888888788888777776543
Q ss_pred CcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHH
Q 000655 1140 SKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTL 1219 (1370)
Q Consensus 1140 ~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL 1219 (1370)
...+++.+...+..-=++ -++....||..|+..+|.|.++...+.-.+|+.+|.++++|-| -|+-.-||+.|-+|=
T Consensus 944 ~t~~~~Tlvp~lLsls~~-~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~L---dDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSD-NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKIL---DDKKRLVRKEAVDTR 1019 (1030)
T ss_pred chHHHhHHHHHHHhcCCC-CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhcc---CcHHHHHHHHHHHHh
Confidence 344555544433221111 1111278999999999999998888888999999999999965 577778998886664
Q ss_pred H
Q 000655 1220 K 1220 (1370)
Q Consensus 1220 ~ 1220 (1370)
.
T Consensus 1020 ~ 1020 (1030)
T KOG1967|consen 1020 Q 1020 (1030)
T ss_pred h
Confidence 3
No 98
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.31 E-value=0.81 Score=44.09 Aligned_cols=69 Identities=12% Similarity=0.199 Sum_probs=57.9
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000655 1270 MGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1342 (1370)
Q Consensus 1270 l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1342 (1370)
+..++.++.||.++||+.|...+..++.... ....+.+.+...+.. .++|+||.|=-.|-++|.-|...
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~-~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLS-QLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHH
Confidence 5678899999999999999999998887665 233456888888888 89999999999999998887743
No 99
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.26 E-value=2.3 Score=55.05 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-----------------hhhhhHHHHHHHHHhhcccCChhHHHHH
Q 000655 1066 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-----------------HIHQYATQVLSVILALLDDLDESVQLTA 1128 (1370)
Q Consensus 1066 ~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-----------------~v~~~~~~lL~all~~L~d~d~~V~leA 1128 (1370)
.+++.+...+.......++.+|..|+-++|++... -..+|.+.+...+-.+....|+...+-+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 44444444433333346788999999999987532 1245777777777777777788899999
Q ss_pred HHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCC---ChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhcc
Q 000655 1129 VSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM---NVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIY 1205 (1370)
Q Consensus 1129 m~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede---~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~ 1205 (1370)
+.+|+++... .+...+.|+..++ ...+|.+|+..|..+... .-+.+...+.|++.. .
T Consensus 511 LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~--------~~~~v~~~l~~I~~n-~ 570 (618)
T PF01347_consen 511 LKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH--------CPEKVREILLPIFMN-T 570 (618)
T ss_dssp HHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT---------HHHHHHHHHHHHH--T
T ss_pred HHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc--------CcHHHHHHHHHHhcC-C
Confidence 9999998752 2334445666666 789999999999987542 235677788886665 4
Q ss_pred CCChhHHHHHHHHHHhhchhhhh--hhhhhh
Q 000655 1206 DDDLSVRQACRNTLKQVAPFMEI--GVYGIF 1234 (1370)
Q Consensus 1206 D~~~~V~~ack~tL~~~a~lL~w--~l~~lf 1234 (1370)
.++++||-||-..|.+|-|-..+ .+....
T Consensus 571 ~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l 601 (618)
T PF01347_consen 571 TEDPEVRIAAYLILMRCNPSPSVLQRIAQSL 601 (618)
T ss_dssp TS-HHHHHHHHHHHHHT---HHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 55788999999999999776555 444443
No 100
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.16 E-value=1 Score=58.61 Aligned_cols=141 Identities=18% Similarity=0.116 Sum_probs=88.9
Q ss_pred hhHHHHHhhhccCCcc----hhhhhhHHHHHHHHHhhcccC-ChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc
Q 000655 1084 PTVRGLCLRGLVQIPS----IHIHQYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1158 (1370)
Q Consensus 1084 ~~VR~lsLrGLgnl~~----~~v~~~~~~lL~all~~L~d~-d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf 1158 (1370)
+.=|.||.==|+.+.. ++..-+...++.-|++-|.|. +.-...=...+|++|-+.-+.....-.-.+-..++-..
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~ 650 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL 650 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence 4556666655554432 233344456677777777664 23344455667777755443332222222333455567
Q ss_pred CcCCChHHHHHHHHHHHHhhccCCC---cch-------------HHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhh
Q 000655 1159 QVSMNVKMRRNAFAAFGALSNFGVG---SQR-------------EAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1222 (1370)
Q Consensus 1159 fede~~~vR~aAi~LfG~L~~~~~~---~~~-------------~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1222 (1370)
..|+-++||+||+.++|.+...+.. ... ....+++-.++.+++--++|..|-|+++-..+|.+.
T Consensus 651 LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 651 LSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred hcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 7889999999999999999984311 111 123344667778999999999999999888888776
Q ss_pred ch
Q 000655 1223 AP 1224 (1370)
Q Consensus 1223 a~ 1224 (1370)
+.
T Consensus 731 ~~ 732 (1387)
T KOG1517|consen 731 VV 732 (1387)
T ss_pred HH
Confidence 63
No 101
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.85 E-value=87 Score=43.67 Aligned_cols=217 Identities=16% Similarity=0.179 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhhhc-ccCCCCChhHHHHHHHHhh-hccccCCCCcccHHHHHH
Q 000655 486 DQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLV-TVEPKLTIETRNHVMKATL-GFFALPNDPIDVVNPLID 563 (1370)
Q Consensus 486 ~eLl~~l~~li~~ep~~~l~s~~~~l~~vr~~am~ait~L~-~L~P~l~~e~~~~ll~~c~-~v~~lp~~~~~l~~~~~~ 563 (1370)
.+++..++.-+-++-.+.. .. .++.|+..|.... +++| +....+..|+ .-++.- .....
T Consensus 180 ~e~L~~ll~~lv~~~~~~~-~~------a~~la~~li~~~a~~~~~-----~i~~f~~~~~~~~~s~~-------~~~~~ 240 (1266)
T KOG1525|consen 180 SELLDVLLENLVKPGRDTI-KE------ADKLASDLIERCADNLED-----TIANFLNSCLTEYKSRQ-------SSLKI 240 (1266)
T ss_pred HHHHHHHHHHhccCCCCcc-HH------HHHHHHHHHHHhhhhhch-----hHHHHHHHHHhhccccc-------cchhh
Confidence 3666666643333333322 22 5667777666644 3333 3445555555 212100 01112
Q ss_pred HHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhcChhHHHhhHHHHHHHHHHHHHHhhhhcccccCCCCCCccchhhh
Q 000655 564 NLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQI 643 (1370)
Q Consensus 564 aL~~lL~~ll~~~~~d~~~~~~~L~~iL~~l~pwl~S~~~heR~RA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~ 643 (1370)
...+++-.+-.. .|+-|..++.+|..|+.|+++.+|..|+..+-+++..+-. |.
T Consensus 241 ~~he~i~~L~~~-------~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~------~l------------- 294 (1266)
T KOG1525|consen 241 KYHELILELWRI-------APQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS------QL------------- 294 (1266)
T ss_pred HHHHHHHHHHHh-------hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh------hh-------------
Confidence 233333334443 3688999999999999999999999999999999884421 10
Q ss_pred hhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhh
Q 000655 644 DRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGAL 723 (1370)
Q Consensus 644 ~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l 723 (1370)
+..-+ .+-..+.=||.|-..+||...++++...|- .++.+. .+ ....
T Consensus 295 -------~~~~~--------------~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~-----~~~~~~---~~----~~~~ 341 (1266)
T KOG1525|consen 295 -------SETYD--------------DLWSAFLGRFNDISVEVRMECVESIKQCLL-----NNPSIA---KA----STIL 341 (1266)
T ss_pred -------cccch--------------HHHHHHHHHhccCChhhhhhHHHHhHHHHh-----cCchhh---hH----HHHH
Confidence 11111 122345558999999999999998876531 121110 00 0111
Q ss_pred hhcHHHHHHhccCCCCChhHHHH--------HHHHHHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhh
Q 000655 724 SSLEDVIAILRSDASIDPSEVFN--------RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTK 793 (1370)
Q Consensus 724 ~~l~d~~~~l~~~~~~~~~~~~~--------~i~~~i~~~L~~~el~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~ 793 (1370)
..+++. + .|+..-.. .+.+ +...+.+ +++.-+-|.+.|....+..-|..-|..+.+.
T Consensus 342 ~~l~~~------~--~D~~~rir~~v~i~~~~v~~-~~l~~~~----~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 342 LALRER------D--LDEDVRVRTQVVIVACDVMK-FKLVYIP----LLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHhh------c--CChhhhheeeEEEEEeehhH-hhhhhhH----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 223211 1 12111000 0111 1111111 2667788999999988888888888888874
No 102
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=4 Score=52.28 Aligned_cols=162 Identities=21% Similarity=0.262 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhH
Q 000655 1007 EKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTV 1086 (1370)
Q Consensus 1007 e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~V 1086 (1370)
+...+|+..+-+.|..+ ..+..++.-+++.++..+-.++-..--.+. +.-..+...-.-.++.+..-..||||.+
T Consensus 28 ~kr~~a~kkvIa~Mt~G--~DvSslF~dvvk~~~T~dlelKKlvyLYl~---nYa~~~P~~a~~avnt~~kD~~d~np~i 102 (734)
T KOG1061|consen 28 EKRKDAVKKVIAYMTVG--KDVSSLFPDVVKCMQTRDLELKKLVYLYLM---NYAKGKPDLAILAVNTFLKDCEDPNPLI 102 (734)
T ss_pred hhHHHHHHHHHhcCccC--cchHhhhHHHHhhcccCCchHHHHHHHHHH---HhhccCchHHHhhhhhhhccCCCCCHHH
Confidence 56667777766666543 557777777777766555443333222222 2211222222335778888888888888
Q ss_pred HHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHH
Q 000655 1087 RGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKM 1166 (1370)
Q Consensus 1087 R~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~v 1166 (1370)
|.+|+|-+|.+...++ ..++...|..++.|.+.-|+-.|..+..++-+.=.+.....- ++..+..+..|+++.|
T Consensus 103 R~lAlrtm~~l~v~~i---~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~g---l~~~L~~ll~D~~p~V 176 (734)
T KOG1061|consen 103 RALALRTMGCLRVDKI---TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSG---LVDALKDLLSDSNPMV 176 (734)
T ss_pred HHHHhhceeeEeehHH---HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccc---hhHHHHHHhcCCCchH
Confidence 8888888888776544 344566777777777777777777777776543222211111 2222334444777777
Q ss_pred HHHHHHHHHHhhc
Q 000655 1167 RRNAFAAFGALSN 1179 (1370)
Q Consensus 1167 R~aAi~LfG~L~~ 1179 (1370)
=+.|..+...+..
T Consensus 177 VAnAlaaL~eI~e 189 (734)
T KOG1061|consen 177 VANALAALSEIHE 189 (734)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777665
No 103
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=90.53 E-value=53 Score=40.62 Aligned_cols=292 Identities=14% Similarity=0.092 Sum_probs=158.2
Q ss_pred HHHHhhhhcccccCcchHHHHHHHHhhhcCCc--hhhHHHHHHHHHHhhcCCC-ChhHHHHHhhhccCCcch-hhhhhH-
Q 000655 1032 CLILTKSINRQQRFQREAAAAALSEFVRYSGG--FDSLLEQMVEALCRHVSDE-SPTVRGLCLRGLVQIPSI-HIHQYA- 1106 (1370)
Q Consensus 1032 ~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~--~~~l~~~~i~~L~~~l~D~-~~~VR~lsLrGLgnl~~~-~v~~~~- 1106 (1370)
...++++|++++..--..|.-+++-++..... .....+...+.|...++.+ +...+-.+++.|+++... ..|...
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 34445566776666667777778888764322 1222334555666666543 366666777888877543 111100
Q ss_pred -HHHHHHHHhhcccCC--hhHHHHHHHHHHHH------hccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHh
Q 000655 1107 -TQVLSVILALLDDLD--ESVQLTAVSCLLTI------LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1177 (1370)
Q Consensus 1107 -~~lL~all~~L~d~d--~~V~leAm~~L~~l------L~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L 1177 (1370)
...++.+.+.|.... -...++++-++=-+ ...+...++-+.+++|+. +.-+++|=..++..|-.+
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k------~s~KEKvvRv~l~~l~Nl 256 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILK------ESTKEKVIRIVLAIFRNL 256 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHH------hhhhHHHHHHHHHHHHHH
Confidence 112333444333211 23444444333221 222222333344444433 223566666777777777
Q ss_pred hccCCCc-chHHHHHHHH-hhhhHHHHhccCC---ChhHHHH---HHHHHHhhchhhh-h-hh-hhhhcccc-CCcCCCC
Q 000655 1178 SNFGVGS-QREAFLEQIH-AMLPRLILHIYDD---DLSVRQA---CRNTLKQVAPFME-I-GV-YGIFNSHC-FNSDHRS 1245 (1370)
Q Consensus 1178 ~~~~~~~-~~~~~~eQv~-~~LvpLLlHL~D~---~~~V~~a---ck~tL~~~a~lL~-w-~l-~~lf~~~~-~~~~~~l 1245 (1370)
....... .+..+...+. ..+++++-.|+.. |+++... -+..|.....-+- | +. .++...+. |.. .
T Consensus 257 l~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp---~ 333 (429)
T cd00256 257 ISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSP---V 333 (429)
T ss_pred hhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCC---C
Confidence 7632211 1223334433 3777777766654 4555532 3333433333222 4 33 55555542 432 4
Q ss_pred Ch-HHHHHHHHHHHHHhCcchHHHHHHHHHHhh-cCCChhHHHHHHHHHhhhhccCch--hhhhhccHHHHHHHHHHHhc
Q 000655 1246 DY-ETFVRDLTRQFVQHFPSRIDSYMGSTIQAF-EAPWPIIQANAIYFSSSILCLCDD--QHILSLFYTQVFGLLVVKLS 1321 (1370)
Q Consensus 1246 ~~-~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~-kS~~~~IR~aA~~fiG~l~~~~~~--~~~~~~~~e~l~~~L~~~Ll 1321 (1370)
|. +.|+++=...|-++. ...+...+.++ +|..+.+=+-|+.=||.+++++|. .....++ .....+. |.
T Consensus 334 H~se~FW~EN~~kf~~~~----~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg---~K~~vM~-Lm 405 (429)
T cd00256 334 HKSEKFWRENADRLNEKN----YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG---GKQRVMR-LL 405 (429)
T ss_pred CCCchHHHHHHHHHHhcc----hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC---cHHHHHH-Hh
Confidence 42 678887777766544 34455666666 466677778888889999999972 2222233 3344566 78
Q ss_pred cCCChhhHHHHHHHHHHHH
Q 000655 1322 QSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1322 ~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
.+|||.||..|-.|...+-
T Consensus 406 ~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 406 NHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 8999999999999987764
No 104
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.51 E-value=2.9 Score=53.65 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-h----------hhhhHHHHHHHHHhhcccCChhHHHHHHHHHHH
Q 000655 1066 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-H----------IHQYATQVLSVILALLDDLDESVQLTAVSCLLT 1134 (1370)
Q Consensus 1066 ~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~----------v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~ 1134 (1370)
..++.+...+.....-+++.+|.-|+-++|++... . +..+.+.+..-+-.+..+.|++.+.-++.+|++
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 33444444443333445889999999999988742 1 245556666666666666677788888999998
Q ss_pred HhccCCcCCcchhHHhHHhhhcCcCc-C--CChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhH
Q 000655 1135 ILKSSSKDAVEPILLNLSVRLRNLQV-S--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSV 1211 (1370)
Q Consensus 1135 lL~~l~~~~~~~~l~~i~~~lrpffe-d--e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V 1211 (1370)
+..-.. ...+.|+.. + -...+|.+|+..|..++.... +.+...+.|+. +=.+++++|
T Consensus 473 ~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--------~~v~~~l~~i~-~n~~e~~Ev 532 (574)
T smart00638 473 AGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--------RKVQEVLLPIY-LNRAEPPEV 532 (574)
T ss_pred cCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--------hHHHHHHHHHH-cCCCCChHH
Confidence 775321 222334443 3 346899999999998875222 34455666655 446778999
Q ss_pred HHHHHHHHHhhchhhhh
Q 000655 1212 RQACRNTLKQVAPFMEI 1228 (1370)
Q Consensus 1212 ~~ack~tL~~~a~lL~w 1228 (1370)
|.+|-..|.+|-|-..+
T Consensus 533 RiaA~~~lm~t~P~~~~ 549 (574)
T smart00638 533 RMAAVLVLMETKPSVAL 549 (574)
T ss_pred HHHHHHHHHhcCCCHHH
Confidence 99999999999665444
No 105
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.29 E-value=10 Score=49.13 Aligned_cols=224 Identities=15% Similarity=0.172 Sum_probs=140.7
Q ss_pred hhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHh
Q 000655 1077 RHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSV 1153 (1370)
Q Consensus 1077 ~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~ 1153 (1370)
..+.||-+-+|..+++-|..+... +-.....-++...++-|.|.|+-|-+-|++|+..+-+.-++. ++..++.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~----il~dL~e 809 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED----ILPDLSE 809 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh----hHHHHHH
Confidence 456888889999999888877652 233445678899999999988889999999888777664432 2222222
Q ss_pred hhcCcCcCCC----hHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhh
Q 000655 1154 RLRNLQVSMN----VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIG 1229 (1370)
Q Consensus 1154 ~lrpffede~----~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~ 1229 (1370)
++++++ .+.|..-=+++|.++.. .|.....+++++.++...-+ .||+-.-|..+-..|+.|+..+.-.
T Consensus 810 ----~Y~s~k~k~~~d~~lkVGEai~k~~qa-~Gel~~~y~~~Li~tfl~gv---repd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 810 ----EYLSEKKKLQTDYRLKVGEAILKVAQA-LGELVFKYKAVLINTFLSGV---REPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred ----HHHhcccCCCccceehHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhc---CCchHHHHHhHHHHHHHHHHHHhhh
Confidence 333322 23344444777777762 34455556666665554433 3776666777777788777654322
Q ss_pred hhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccH
Q 000655 1230 VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFY 1309 (1370)
Q Consensus 1230 l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~ 1309 (1370)
+. +|+.+....+..-.. -+..+.+|++|+..+-.+++.+..+... +..
T Consensus 882 vs-----------------d~~~ev~~~Il~l~~--------------~d~s~~vRRaAv~li~~lL~~tg~dlLp-ilr 929 (982)
T KOG4653|consen 882 VS-----------------DFFHEVLQLILSLET--------------TDGSVLVRRAAVHLLAELLNGTGEDLLP-ILR 929 (982)
T ss_pred hh-----------------HHHHHHHHHHHHHHc--------------cCCchhhHHHHHHHHHHHHhccchhhHH-HHH
Confidence 11 233444443333111 1556779999999999888876633321 111
Q ss_pred ---HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHcc
Q 000655 1310 ---TQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1344 (1370)
Q Consensus 1310 ---e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1344 (1370)
-+....+......++|-.+|-.|-.++..++..-.
T Consensus 930 ~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 930 LLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALE 967 (982)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 13333444446778999999999999888885544
No 106
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.56 E-value=5.9 Score=50.03 Aligned_cols=142 Identities=22% Similarity=0.230 Sum_probs=100.1
Q ss_pred HhhhhcccccCcchHHHHHHHHhhhc--CCch----hhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhh--h
Q 000655 1035 LTKSINRQQRFQREAAAAALSEFVRY--SGGF----DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIH--Q 1104 (1370)
Q Consensus 1035 L~~~L~s~~~~~Ri~a~af~sELl~~--~~~~----~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~--~ 1104 (1370)
++..|+-++...|.-|+-.|.++-.- |... ...++.=...|..-+.||.|.||.-|+.|+..+-.. .+- .
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~ 258 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT 258 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH
Confidence 45678888888999999999998653 3221 223344445677778999999999999999876542 110 0
Q ss_pred hHHHHHHHHHhhcc-cCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhc
Q 000655 1105 YATQVLSVILALLD-DLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1179 (1370)
Q Consensus 1105 ~~~~lL~all~~L~-d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1179 (1370)
-...++..+.+-+- |+..+|++....||..++.. ..-.+++-.+..+++|.+-|....||.|+..+.-.+-.
T Consensus 259 i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 259 ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 11222333333222 23468999999999999975 33456777888899999999999999999999877654
No 107
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.27 E-value=2.9 Score=54.77 Aligned_cols=192 Identities=18% Similarity=0.138 Sum_probs=122.6
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcC----cCcCCChHHHHHHHHHHHHhhccCC
Q 000655 1107 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRN----LQVSMNVKMRRNAFAAFGALSNFGV 1182 (1370)
Q Consensus 1107 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrp----ffede~~~vR~aAi~LfG~L~~~~~ 1182 (1370)
|.+|..+++-- =++.|+.-|++.|+.=.| .+ -+.+++-|.| ++...-.++|-.=.....++.+...
T Consensus 475 PiVLQVLLSQv------HRlRAL~LL~RFLDlGpW-AV---~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~ 544 (1387)
T KOG1517|consen 475 PIVLQVLLSQV------HRLRALVLLARFLDLGPW-AV---DLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDP 544 (1387)
T ss_pred chHHHHHHHHH------HHHHHHHHHHHHhccchh-hh---hhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCc
Confidence 66666666543 578899999999875333 22 2233333333 4666778899988999999998665
Q ss_pred CcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhC
Q 000655 1183 GSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF 1262 (1370)
Q Consensus 1183 ~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~ 1262 (1370)
.-+.+-++|-.+...+..|---+--+++-+..|.|.|..+..-..-.-++.++.
T Consensus 545 SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~-------------------------- 598 (1387)
T KOG1517|consen 545 SCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG-------------------------- 598 (1387)
T ss_pred hhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc--------------------------
Confidence 545566677555544443321122245667777777766554321110111111
Q ss_pred cchHHHHHHHHHHhhcCC-ChhHHHHHHHHHhhhhccCchhhhhhccHHH-HHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1263 PSRIDSYMGSTIQAFEAP-WPIIQANAIYFSSSILCLCDDQHILSLFYTQ-VFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1263 ~~~~~~~l~~~l~y~kS~-~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~-l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
.++.-|+..+.++ .+=+|++.++-+|.+-++++..... +.+. ...-|.. ++.||-|.||+.|.-|||-|.
T Consensus 599 -----~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~--G~r~~AhekL~~-~LsD~vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 599 -----NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS--GRRDNAHEKLIL-LLSDPVPEVRAAAVFALGTFL 670 (1387)
T ss_pred -----cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc--cccccHHHHHHH-HhcCccHHHHHHHHHHHHHHh
Confidence 1344566677774 5779999999999999988855542 2232 3444666 899999999999999999987
Q ss_pred HH
Q 000655 1341 KS 1342 (1370)
Q Consensus 1341 k~ 1342 (1370)
..
T Consensus 671 ~~ 672 (1387)
T KOG1517|consen 671 SN 672 (1387)
T ss_pred cc
Confidence 54
No 108
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.23 E-value=12 Score=50.13 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=95.8
Q ss_pred CCcchhHHhHHhhh-----------cCcCcCCChHHHHHHHHHHHHhhcc-CCCcchHHHHHHHHh-hhhHHHHhccCCC
Q 000655 1142 DAVEPILLNLSVRL-----------RNLQVSMNVKMRRNAFAAFGALSNF-GVGSQREAFLEQIHA-MLPRLILHIYDDD 1208 (1370)
Q Consensus 1142 ~~~~~~l~~i~~~l-----------rpffede~~~vR~aAi~LfG~L~~~-~~~~~~~~~~eQv~~-~LvpLLlHL~D~~ 1208 (1370)
++++.++.+++.++ -++++.|+-.+|.+-..+.|++... -.+.+-+..-.++-. .+--|.-|+.|-+
T Consensus 293 k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvs 372 (1251)
T KOG0414|consen 293 KIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVS 372 (1251)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 34555555555544 3689999999999999999999863 222332444444444 7777889999999
Q ss_pred hhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHH
Q 000655 1209 LSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANA 1288 (1370)
Q Consensus 1209 ~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA 1288 (1370)
+-||.+.=..+.++ |+.+. ...++.+.++.-++.-+.|-..-+|++|
T Consensus 373 a~vRskVLqv~~~l-----------~~~~s----------------------~p~~~~~eV~~la~grl~DkSslVRk~A 419 (1251)
T KOG0414|consen 373 AYVRSKVLQVFRRL-----------FQQHS----------------------IPLGSRTEVLELAIGRLEDKSSLVRKNA 419 (1251)
T ss_pred HHHHHHHHHHHHHH-----------HHccC----------------------CCccHHHHHHHHHhcccccccHHHHHHH
Confidence 99998764333332 22221 1234455666777778888889999999
Q ss_pred HHHHhhhhccCc--hhhhhhccHHHHHHHHHHHhccCCChhh
Q 000655 1289 IYFSSSILCLCD--DQHILSLFYTQVFGLLVVKLSQSADAIV 1328 (1370)
Q Consensus 1289 ~~fiG~l~~~~~--~~~~~~~~~e~l~~~L~~~Ll~Dpdp~V 1328 (1370)
+..+-.++..-| .+++...-.......++. |.++-+|.+
T Consensus 420 i~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~-~e~~~e~t~ 460 (1251)
T KOG0414|consen 420 IQLLSSLLDRHPFSSELRSDDLRAKLEKELQK-LEEELESTE 460 (1251)
T ss_pred HHHHHHHHhcCCchhhhcchhhhhhHHHHHHh-hhhhccccc
Confidence 988776666555 333322212223344555 454444443
No 109
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.01 E-value=2.3 Score=52.34 Aligned_cols=190 Identities=17% Similarity=0.164 Sum_probs=122.7
Q ss_pred hhHHHHHHHHhhhhcccccCcchHHH-HHHHH-hhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--h
Q 000655 1026 KEVQTICLILTKSINRQQRFQREAAA-AALSE-FVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--H 1101 (1370)
Q Consensus 1026 ~~~~~i~~~L~~~L~s~~~~~Ri~a~-af~sE-Ll~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~ 1101 (1370)
.++-++++.+++.=+.+.-+.|+... +-|.+ .+..-.....+....+.++.+++..++..||.-+++=|+-+... .
T Consensus 45 ~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e 124 (885)
T COG5218 45 EEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE 124 (885)
T ss_pred HHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch
Confidence 35666666666665556666676653 22222 22221122566788899999999999999999999977755321 1
Q ss_pred h-hhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcC--CcchhHHhHHhhhcCcCcCCChHHHHHHHHH-----
Q 000655 1102 I-HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--AVEPILLNLSVRLRNLQVSMNVKMRRNAFAA----- 1173 (1370)
Q Consensus 1102 v-~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~--~~~~~l~~i~~~lrpffede~~~vR~aAi~L----- 1173 (1370)
+ .-....++..+.+-+.|.+..|+.||+.+|.+.=+--+.. .+..+++.+ ...|.+++||.+|.--
T Consensus 125 IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~------vqnDPS~EVRr~allni~vdn 198 (885)
T COG5218 125 IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDI------VQNDPSDEVRRLALLNISVDN 198 (885)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH------HhcCcHHHHHHHHHHHeeeCC
Confidence 1 2245778899999999999999999999999986543332 233444443 4589999999999743
Q ss_pred --HHHhhcc---CCCcchHHHHHHHHhhh-----------hHHH-HhccCCChhHHHHHHHHHHh
Q 000655 1174 --FGALSNF---GVGSQREAFLEQIHAML-----------PRLI-LHIYDDDLSVRQACRNTLKQ 1221 (1370)
Q Consensus 1174 --fG~L~~~---~~~~~~~~~~eQv~~~L-----------vpLL-lHL~D~~~~V~~ack~tL~~ 1221 (1370)
+|-+..- +.+..+.-+.+.++..+ +-|+ --|.|-+-+|..||+.++..
T Consensus 199 sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 199 STYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHHHHHHHHHH
Confidence 2333221 22334445555544333 1111 24678899999999988753
No 110
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.74 E-value=14 Score=47.52 Aligned_cols=149 Identities=19% Similarity=0.205 Sum_probs=100.4
Q ss_pred chhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----
Q 000655 1025 PKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI---- 1100 (1370)
Q Consensus 1025 ~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---- 1100 (1370)
+.....++.-+...+++.+..-|.+|+.-...+-.-... ..-...+++.|..-+.|+||.|-.-|+.+|..|...
T Consensus 116 ~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~-~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~ 194 (734)
T KOG1061|consen 116 DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD-LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV 194 (734)
T ss_pred hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh-hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC
Confidence 345566777778888888888898888766665443211 111122556777777899999999999999988643
Q ss_pred hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhc
Q 000655 1101 HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1179 (1370)
Q Consensus 1101 ~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1179 (1370)
..-...++++.-++..+.+- .-+.-+..|..+......+.. =..+|+.|+.|++.+-++.|=.+|..+|-.+.+
T Consensus 195 ~~~~l~~~~~~~lL~al~ec---~EW~qi~IL~~l~~y~p~d~~--ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNEC---TEWGQIFILDCLAEYVPKDSR--EAEDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred CcccccHHHHHHHHHHHHHh---hhhhHHHHHHHHHhcCCCCch--hHHHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 22334466677777776433 344444555555555555542 245788999999999998888888887777665
No 111
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=88.74 E-value=18 Score=43.99 Aligned_cols=226 Identities=12% Similarity=0.077 Sum_probs=132.1
Q ss_pred HHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChh-HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCC
Q 000655 1088 GLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDES-VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN 1163 (1370)
Q Consensus 1088 ~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~-V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~ 1163 (1370)
......+.+|... ....-..+...+++.|=+|..+. |..+|+++++-.+-+-.-.....+..+-+.-|..-.+|..
T Consensus 367 ~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ 446 (728)
T KOG4535|consen 367 ASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKS 446 (728)
T ss_pred hHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHh
Confidence 3334445555432 33333467888999998875544 7788888888765554444444555555555544455667
Q ss_pred hHHHHHHHHHHHHhhc--cCCCcchHHHHHHHHhhhhHHHHhccCC----ChhHHHHHHHHHHhhchhhhhhhhhhhccc
Q 000655 1164 VKMRRNAFAAFGALSN--FGVGSQREAFLEQIHAMLPRLILHIYDD----DLSVRQACRNTLKQVAPFMEIGVYGIFNSH 1237 (1370)
Q Consensus 1164 ~~vR~aAi~LfG~L~~--~~~~~~~~~~~eQv~~~LvpLLlHL~D~----~~~V~~ack~tL~~~a~lL~w~l~~lf~~~ 1237 (1370)
-.+|..|+-..|.+.. ..+.+..+.+.+.+.+.++--++.+.-. +..|...+-++|+....++..-.+
T Consensus 447 ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~------ 520 (728)
T KOG4535|consen 447 LNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEK------ 520 (728)
T ss_pred HhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhh------
Confidence 8899999999998876 3455666677777666555544443322 334666666666665555542100
Q ss_pred cCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHH
Q 000655 1238 CFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLV 1317 (1370)
Q Consensus 1238 ~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~ 1317 (1370)
..+++.+..--..+...-+ +- ..-.+|.||++.+|-+.++-.-......=-.+++++|-
T Consensus 521 -------~~~~e~~~~~~~~l~~~v~---------~~-----~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~ 579 (728)
T KOG4535|consen 521 -------PTFAEIIEESIQALISTVL---------TE-----AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALT 579 (728)
T ss_pred -------ccHHHHHHHHHHhccccee---------cc-----cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHH
Confidence 0011111000000100000 00 12358999999999888765432222233467899998
Q ss_pred HHhccCCChhhHHHHHHHHHHHH
Q 000655 1318 VKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1318 ~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
.++.+-..-.||..||.||..-.
T Consensus 580 ~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 580 SLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred HHHHHhccceEeehhhhhhcCCC
Confidence 85555678899999999986543
No 112
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.67 E-value=7.9 Score=44.43 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=88.0
Q ss_pred HHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhh-cCCC-ChhHHHHHhhhccCCcch-hhhhhHH
Q 000655 1031 ICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRH-VSDE-SPTVRGLCLRGLVQIPSI-HIHQYAT 1107 (1370)
Q Consensus 1031 i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~-l~D~-~~~VR~lsLrGLgnl~~~-~v~~~~~ 1107 (1370)
.+..+...|++++..-|.-|...+.-+-- ....+..++.-+....+. ..++ |..++..++|-|.||... +.+....
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~ 133 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLSV-NDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA 133 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH
Confidence 44556777778887777767666554422 122333344445444444 3443 789999999999999742 1122222
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccC-------CcCCcchhHHhHHhhhcCcCcC-CChHHHHHHHHHHHHhhc
Q 000655 1108 QVLSVILALLDDLDESVQLTAVSCLLTILKSS-------SKDAVEPILLNLSVRLRNLQVS-MNVKMRRNAFAAFGALSN 1179 (1370)
Q Consensus 1108 ~lL~all~~L~d~d~~V~leAm~~L~~lL~~l-------~~~~~~~~l~~i~~~lrpffed-e~~~vR~aAi~LfG~L~~ 1179 (1370)
..++.++..|...+..+...++..|.++-..- ..+..+++ -.+|+. ++.++-..++.+|+.+.+
T Consensus 134 ~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~--------~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 134 NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSF--------LSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHH--------HHHHccCCccHHHHHHHHHHHHHHH
Confidence 34556666666668888888888887774432 22222222 245665 589999999999999976
Q ss_pred c
Q 000655 1180 F 1180 (1370)
Q Consensus 1180 ~ 1180 (1370)
.
T Consensus 206 ~ 206 (254)
T PF04826_consen 206 N 206 (254)
T ss_pred h
Confidence 3
No 113
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.44 E-value=1.6 Score=47.65 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH-HHc
Q 000655 1265 RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL-KSI 1343 (1370)
Q Consensus 1265 ~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-k~~ 1343 (1370)
.++.|+...+...-|+...+|..|..+++.+++..= +...+.+..|+. |.-||++.||..|.+.+..+. |+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL------vnP~~cvp~lIA-L~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGL------VNPKQCVPTLIA-LETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC------CChHHHHhHhhh-hhCCCChHHHHHHHHHHHHHHHHhH
Confidence 456788999999999999999999999999987553 334556888999 899999999999999998875 443
No 114
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=88.26 E-value=1.9 Score=48.68 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=38.5
Q ss_pred cCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhh
Q 000655 1160 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1222 (1370)
Q Consensus 1160 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1222 (1370)
+.|.+-||.-|..++|.++. . .++--|--++.|+++-|++.|-.+|-++
T Consensus 230 ~~E~pMVRhEaAeALGaIa~---e-----------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 230 ETEHPMVRHEAAEALGAIAD---E-----------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hhcchHHHHHHHHHHHhhcC---H-----------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 56778899999999999874 1 2445566788999999999999888764
No 115
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.85 E-value=1.8 Score=41.73 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=38.1
Q ss_pred HHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcc
Q 000655 1032 CLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS 1099 (1370)
Q Consensus 1032 ~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~ 1099 (1370)
+...+..++++..+-|.-|..-+..|+.+........+.++..+...++|+++-|=--|++||+.++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 44445555666666666666666666665431122234455566666666666666666666666654
No 116
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.77 E-value=67 Score=40.90 Aligned_cols=127 Identities=19% Similarity=0.246 Sum_probs=73.5
Q ss_pred cccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCC
Q 000655 1042 QQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLD 1121 (1370)
Q Consensus 1042 ~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d 1121 (1370)
+....+..|+-|+..|.++.. .+-+.+++.+..-..|++..||+-|+|||..+..+ -..+.+.+.+.+...|...|
T Consensus 34 g~~k~K~Laaq~I~kffk~FP---~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-~~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFP---DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-NPEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-G---GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-HHHHHhHHHHHHHHHHhccc
Confidence 345566677778888887642 44577899999999999999999999999999754 12355666666666665433
Q ss_pred hh---HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHH-HHHhhcc
Q 000655 1122 ES---VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAA-FGALSNF 1180 (1370)
Q Consensus 1122 ~~---V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~L-fG~L~~~ 1180 (1370)
.. ++-.|+ ..++..=....++.++-+| .+- ..+.+.+|.-++.- =..|...
T Consensus 110 ~~E~~~v~~sL---~~ll~~d~k~tL~~lf~~i----~~~-~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 110 PVELDAVKNSL---MSLLKQDPKGTLTGLFSQI----ESS-KSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp HHHHHHHHHHH---HHHHHH-HHHHHHHHHHHH----H----HS-HHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHH---HHHHhcCcHHHHHHHHHHH----Hhc-ccCchHHHHHHHHHHHHHHhhC
Confidence 22 444444 4444332223344444443 321 34567899999954 4555543
No 117
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=11 Score=52.02 Aligned_cols=221 Identities=15% Similarity=0.181 Sum_probs=154.0
Q ss_pred HHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHH
Q 000655 1110 LSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1189 (1370)
Q Consensus 1110 L~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1189 (1370)
+.-++.-|...|+.--..|+.-|+.+.+..+......++...+.-...+--|++..||.+.+..|-.+... .++.+
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~----lkk~l 118 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK----LKKKL 118 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH----HHHHh
Confidence 44555666667888888999999999988777766666666666666777899999999999999999973 44455
Q ss_pred HHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHH
Q 000655 1190 LEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSY 1269 (1370)
Q Consensus 1190 ~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~ 1269 (1370)
-..+..-++|.++--.|....|+.+++.++..+.+==+| .++...- + ++...-....++.+.|+.+.+.
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~--~~v~~~c--~-------~~i~~~~~~~~~~~~~~slSd~ 187 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKD--RHVWFKC--D-------PEIFYLVTEILVKETPDSLSDL 187 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhh--HHHHHHh--h-------HHHHHHHHHHHhccCccccchh
Confidence 556677888899999999999999999999999983333 2222210 0 1121222345678888888887
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHhhhh-ccCchhhhhhcc----HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHcc
Q 000655 1270 MGSTIQAFEAPWPIIQANAIYFSSSIL-CLCDDQHILSLF----YTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSIN 1344 (1370)
Q Consensus 1270 l~~~l~y~kS~~~~IR~aA~~fiG~l~-~~~~~~~~~~~~----~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~ 1344 (1370)
-.-+-.+..+--.++-..+-...-.++ ++.+.+++.... .-.--+.+=. +.+++.|.||..+-+.+..+.+...
T Consensus 188 ~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk-~~~~k~~~i~~~~~ell~~l~~~i~ 266 (1312)
T KOG0803|consen 188 RTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWK-LLKSKSPSIKVALLELLLSLIDDIL 266 (1312)
T ss_pred hhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHH-HhcCCCcchhHHHHHHHHHHHhhhH
Confidence 777777887777776666655554444 455545443111 0112223455 7889999999999999888876554
Q ss_pred cc
Q 000655 1345 SH 1346 (1370)
Q Consensus 1345 ~~ 1346 (1370)
.+
T Consensus 267 ~~ 268 (1312)
T KOG0803|consen 267 NR 268 (1312)
T ss_pred Hh
Confidence 43
No 118
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.47 E-value=1.1e+02 Score=40.10 Aligned_cols=268 Identities=16% Similarity=0.146 Sum_probs=154.2
Q ss_pred hHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHH
Q 000655 1048 EAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLT 1127 (1370)
Q Consensus 1048 i~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~le 1127 (1370)
+.-+..-++++... ....-++...+..|+++-...|--=+.|++.++...-.+...+ .+.++-..+.....-.+..
T Consensus 226 ~~lir~~~~~l~~~---~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfa 301 (865)
T KOG1078|consen 226 CMLIRIASELLKEN---QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFA 301 (865)
T ss_pred HHHHHHHHHHhhhc---ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHH
Confidence 33334445555533 1222345678888998888888888888888777544444444 4455555555455668889
Q ss_pred HHHHHHHHhccCCcCCcchhHHhHH-hhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccC
Q 000655 1128 AVSCLLTILKSSSKDAVEPILLNLS-VRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYD 1206 (1370)
Q Consensus 1128 Am~~L~~lL~~l~~~~~~~~l~~i~-~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D 1206 (1370)
|+.+|.++-..-.. .++.| .-+-++..|.|-.+---||.. |.+.|..+..+.+.+|+- ..+--+.|
T Consensus 302 AvRtLnkvAm~~P~------~v~~cN~elE~lItd~NrsIat~AITt---LLKTG~e~sv~rLm~qI~----~fv~disD 368 (865)
T KOG1078|consen 302 AVRTLNKVAMKHPQ------AVTVCNLDLESLITDSNRSIATLAITT---LLKTGTESSVDRLMKQIS----SFVSDISD 368 (865)
T ss_pred HHHHHHHHHHhCCc------cccccchhHHhhhcccccchhHHHHHH---HHHhcchhHHHHHHHHHH----HHHHhccc
Confidence 99999998765322 12222 234678888887777777765 445455677777777754 34556789
Q ss_pred CChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC-----
Q 000655 1207 DDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW----- 1281 (1370)
Q Consensus 1207 ~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~----- 1281 (1370)
+..-|+-.+-.+|+..-|..+..+-..+.+- +.+++++.|-.-+-+...-.++..|+.=..=+...-.|+.|..
T Consensus 369 eFKivvvdai~sLc~~fp~k~~~~m~FL~~~-Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~ 447 (865)
T KOG1078|consen 369 EFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM-LREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIA 447 (865)
T ss_pred cceEEeHHHHHHHHhhccHHHHHHHHHHHHH-HHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHH
Confidence 9888888888888888886555333333332 2334566553332233333445555544444444444444332
Q ss_pred --------------------------------hhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhH
Q 000655 1282 --------------------------------PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVR 1329 (1370)
Q Consensus 1282 --------------------------------~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR 1329 (1370)
..+|++|+..+-.++..-+ . -.+.+...|.+ -+.|+|-.||
T Consensus 448 ~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~-~-----l~~sI~vllkR-c~~D~DdevR 520 (865)
T KOG1078|consen 448 VRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV-V-----LLPSILVLLKR-CLNDSDDEVR 520 (865)
T ss_pred HHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-C-----ccccHHHHHHH-HhcCchHHHH
Confidence 2344444444433331111 0 11334444555 5667777777
Q ss_pred HHHHHHHHHHH
Q 000655 1330 ATCSSSLGWLL 1340 (1370)
Q Consensus 1330 ~~Aa~aL~~l~ 1340 (1370)
.+|+-+|..+.
T Consensus 521 drAtf~l~~l~ 531 (865)
T KOG1078|consen 521 DRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHHhh
Confidence 77777777665
No 119
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.45 E-value=33 Score=44.20 Aligned_cols=267 Identities=14% Similarity=0.198 Sum_probs=144.4
Q ss_pred hHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhh
Q 000655 1027 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQ 1104 (1370)
Q Consensus 1027 ~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~ 1104 (1370)
++--+++..-+-|+.|+|.-|-...-|++.| .+.+++++++-...+.+.++++-||+-|+-+++.|-.. +.-+
T Consensus 96 EMILvcna~RkDLQHPNEyiRG~TLRFLckL-----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~p 170 (948)
T KOG1058|consen 96 EMILVCNAYRKDLQHPNEYIRGSTLRFLCKL-----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIP 170 (948)
T ss_pred HHHHHHHHHhhhccCchHhhcchhhhhhhhc-----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcC
Confidence 3444556666777788888888877777664 34577788888888888888888888888888866321 1111
Q ss_pred hHHHHHHHHH-----------------------------hhccc---CCh---hHHHHHHHHHHH------------Hhc
Q 000655 1105 YATQVLSVIL-----------------------------ALLDD---LDE---SVQLTAVSCLLT------------ILK 1137 (1370)
Q Consensus 1105 ~~~~lL~all-----------------------------~~L~d---~d~---~V~leAm~~L~~------------lL~ 1137 (1370)
..|.++...+ +..++ -++ -|+.|-+.-... |..
T Consensus 171 DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~ 250 (948)
T KOG1058|consen 171 DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYN 250 (948)
T ss_pred ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHH
Confidence 1222222222 22221 111 122222221111 111
Q ss_pred cCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcch----------HHHHHHHHhhhh-HHHHhccC
Q 000655 1138 SSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR----------EAFLEQIHAMLP-RLILHIYD 1206 (1370)
Q Consensus 1138 ~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~----------~~~~eQv~~~Lv-pLLlHL~D 1206 (1370)
.+... -+.+...-|..+-.++.++.. ++++|=.+..=+.+-.+..-+ .+.-+-|++.++ ..|--|.-
T Consensus 251 lL~st-ssaV~fEaa~tlv~lS~~p~a-lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss 328 (948)
T KOG1058|consen 251 LLSST-SSAVIFEAAGTLVTLSNDPTA-LKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSS 328 (948)
T ss_pred HHhcC-CchhhhhhcceEEEccCCHHH-HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCc
Confidence 11111 222333334444444444433 333333333222221111111 111122333333 34445566
Q ss_pred CChhHHHHHHHHHHhhchhhhh-hh-----hhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCC
Q 000655 1207 DDLSVRQACRNTLKQVAPFMEI-GV-----YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP 1280 (1370)
Q Consensus 1207 ~~~~V~~ack~tL~~~a~lL~w-~l-----~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~ 1280 (1370)
++-+|+++|=.--..++..=+. ++ +++-.++.-+.+++-.|+..+-.......-+||+.....+.-.+.|+.|.
T Consensus 329 ~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~ 408 (948)
T KOG1058|consen 329 PDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDS 408 (948)
T ss_pred ccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccC
Confidence 7888988775433333322222 22 22223332223345568777777778888999999999999999999999
Q ss_pred ChhHHHHHHHHHhhhhccCc
Q 000655 1281 WPIIQANAIYFSSSILCLCD 1300 (1370)
Q Consensus 1281 ~~~IR~aA~~fiG~l~~~~~ 1300 (1370)
++.--..-..|+--.+.-+|
T Consensus 409 N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 409 NEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred CHHHHHHHHHHHHHHHHhCc
Confidence 99777777788887787776
No 120
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.36 E-value=11 Score=47.93 Aligned_cols=195 Identities=15% Similarity=0.140 Sum_probs=122.6
Q ss_pred hHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCc-hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhh
Q 000655 1027 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQY 1105 (1370)
Q Consensus 1027 ~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~ 1105 (1370)
.+.+++++++....++....|.-..-++.-++++... ...+...+...|..++.|-.|.||.-|+.+|..+-......-
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 6888999999999999999999999999999885433 556777788889999999999999999999886642100000
Q ss_pred HHHHHHHHHhhcc-cCChhHHHHHHHHH-------HHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHh
Q 000655 1106 ATQVLSVILALLD-DLDESVQLTAVSCL-------LTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1177 (1370)
Q Consensus 1106 ~~~lL~all~~L~-d~d~~V~leAm~~L-------~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L 1177 (1370)
-.+.+++...++ |++++|+-.||..+ ..|+++..+... ...-=+=.|+-| +-++|..+|.-+-.|
T Consensus 162 -~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~-anRrlvY~r~lp-----kid~r~lsi~krv~L 234 (892)
T KOG2025|consen 162 -CPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSG-ANRRLVYERCLP-----KIDLRSLSIDKRVLL 234 (892)
T ss_pred -ccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhH-HHHHHHHHHhhh-----hhhhhhhhHHHHHHH
Confidence 112333333332 45567888887654 344443321110 000000111122 226788888888777
Q ss_pred hccCCCc----chHHHHHHHHh--------hhhHHHHhccCCCh-hHHHHHHHHHHh-hchhhhh
Q 000655 1178 SNFGVGS----QREAFLEQIHA--------MLPRLILHIYDDDL-SVRQACRNTLKQ-VAPFMEI 1228 (1370)
Q Consensus 1178 ~~~~~~~----~~~~~~eQv~~--------~LvpLLlHL~D~~~-~V~~ack~tL~~-~a~lL~w 1228 (1370)
..+|-.. -+.++.+.+.+ +++-||-.|.=++. +|+..+-.||+. ..+..++
T Consensus 235 lewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~v~e~v~~ 299 (892)
T KOG2025|consen 235 LEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSGVREDVGS 299 (892)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhh
Confidence 7764332 23334444444 66666666665655 788888888888 4444444
No 121
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.93 E-value=7.2 Score=52.10 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=121.9
Q ss_pred ChhhHHHHHHHHHhHhhhcC-chhHHHHHHHHhhhhcccccCc----chHHHHHHHHhhhcCCchhhHHHHHHHHHHhhc
Q 000655 1005 DKEKWINLIGDVAGCVSIKR-PKEVQTICLILTKSINRQQRFQ----REAAAAALSEFVRYSGGFDSLLEQMVEALCRHV 1079 (1370)
Q Consensus 1005 ~~e~~~~gV~lLAr~m~~~~-~~~~~~i~~~L~~~L~s~~~~~----Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l 1079 (1370)
+.++..+.|.-++.-..-+. -..+.+.+..+....+.+.... +.+|+..+..|+.=+ ...-+.-+..|..-+
T Consensus 893 seDd~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fces~l~llftim 969 (1251)
T KOG0414|consen 893 SEDDLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCESHLPLLFTIM 969 (1251)
T ss_pred cchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHH
Confidence 35556666655554433333 2344455555555554444333 578888888887522 111122222333333
Q ss_pred -CCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc
Q 000655 1080 -SDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL 1158 (1370)
Q Consensus 1080 -~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf 1158 (1370)
+.|+|.||.=+.=|+|.++..- ......-=+.++.-|.|.+..|+..|+.+|+.++-. +.-.+.-.+-.+|. +
T Consensus 970 eksp~p~IRsN~VvalgDlav~f-pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-dmiKVKGql~eMA~----c 1043 (1251)
T KOG0414|consen 970 EKSPSPRIRSNLVVALGDLAVRF-PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN-DMIKVKGQLSEMAL----C 1043 (1251)
T ss_pred hcCCCceeeecchheccchhhhc-ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-hhhHhcccHHHHHH----H
Confidence 5899999999999999998530 011122234578889999999999999999998753 22233444445544 7
Q ss_pred CcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCCh
Q 000655 1159 QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDL 1209 (1370)
Q Consensus 1159 fede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~ 1209 (1370)
.+|+++.||..|=.-|-.|++.+ +-|++.|+-.+-||.|.+-
T Consensus 1044 l~D~~~~IsdlAk~FF~Els~k~---------n~iynlLPdil~~Ls~~~l 1085 (1251)
T KOG0414|consen 1044 LEDPNAEISDLAKSFFKELSSKG---------NTIYNLLPDILSRLSNGNL 1085 (1251)
T ss_pred hcCCcHHHHHHHHHHHHHhhhcc---------cchhhhchHHHHhhccCcc
Confidence 79999999999999999999732 3477889999999999843
No 122
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.75 E-value=32 Score=40.42 Aligned_cols=136 Identities=16% Similarity=0.151 Sum_probs=87.4
Q ss_pred hHHHHHHHHh-hhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----h
Q 000655 1027 EVQTICLILT-KSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----H 1101 (1370)
Q Consensus 1027 ~~~~i~~~L~-~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~----~ 1101 (1370)
.+..++..++ |.+++.+..-|..|+-.++=+ +-....+-+.-+..+...++..++.||..|++++..+... .
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~---~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLC---CLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---HHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4557776665 999999998898887655532 1112223333344555555555999999999999877431 1
Q ss_pred h--------hhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCC---ChHHHH
Q 000655 1102 I--------HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM---NVKMRR 1168 (1370)
Q Consensus 1102 v--------~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede---~~~vR~ 1168 (1370)
. ......++..+...|++.++++...|..|+.|++-.-.-.+...++-.+. .-+|+.. +..+|.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Ll---l~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLL---LLYFNPSTEDNQRLRQ 174 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH---HHHcCcccCCcHHHHH
Confidence 1 12345788889999998888999999999999986533222123333332 3356553 344554
No 123
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=86.38 E-value=11 Score=43.53 Aligned_cols=226 Identities=19% Similarity=0.213 Sum_probs=121.1
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcch----hh-hhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhH
Q 000655 1074 ALCRHVSDESPTVRGLCLRGLVQIPSI----HI-HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1148 (1370)
Q Consensus 1074 ~L~~~l~D~~~~VR~lsLrGLgnl~~~----~v-~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l 1148 (1370)
.|...+.++++.+|.-+++-|+++... .. ++.+..+++-+.+-|+ |...+..|+.||..+...-... ....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~~--~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNFS--PESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCCC--hhhH
Confidence 355667778888888887777755432 11 2233455555666664 5566777788888887432211 1122
Q ss_pred HhHHhhhcCcC--cCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhh
Q 000655 1149 LNLSVRLRNLQ--VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFM 1226 (1370)
Q Consensus 1149 ~~i~~~lrpff--ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL 1226 (1370)
..++..+..-. ..--...|...+.++..+... ..+.+ ..+-...+.-++|+-|.+.+=+ +++
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~----~~~~l-~~~~~~fv~~~i~~~~gEkDPR-----------nLl 142 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN----HREAL-QSMGDDFVYGFIQLIDGEKDPR-----------NLL 142 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH----hHHHH-HhchhHHHHHHHHHhccCCCHH-----------HHH
Confidence 23322221111 233467899999999988862 12222 2233455566666666655543 234
Q ss_pred hh-hhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhh
Q 000655 1227 EI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHIL 1305 (1370)
Q Consensus 1227 ~w-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~ 1305 (1370)
-| ++...+.+. |. .+++..++...+.-.|| +.|--.|..+.+-.+--+.-.+-..+....
T Consensus 143 ~~F~l~~~i~~~-~~------~~~~~e~lFd~~~cYFP----------I~F~pp~~dp~~IT~edLk~~L~~cl~s~~-- 203 (262)
T PF14500_consen 143 LSFKLLKVILQE-FD------ISEFAEDLFDVFSCYFP----------ITFRPPPNDPYGITREDLKRALRNCLSSTP-- 203 (262)
T ss_pred HHHHHHHHHHHh-cc------cchhHHHHHHHhhheee----------eeeeCCCCCCCCCCHHHHHHHHHHHhcCcH--
Confidence 44 444344332 21 24566777777776666 445555544333222222222222221111
Q ss_pred hccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1306 SLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1306 ~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
.--+..+..|.++ +.++.+.|+.-+-++|....
T Consensus 204 -~fa~~~~p~LleK-L~s~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 204 -LFAPFAFPLLLEK-LDSTSPSVKLDSLQTLKACI 236 (262)
T ss_pred -hhHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHH
Confidence 1135667777775 66678889998888887755
No 124
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=86.27 E-value=13 Score=40.50 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhhccCCCcchHHHHHH-----------HHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhh
Q 000655 1165 KMRRNAFAAFGALSNFGVGSQREAFLEQ-----------IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGI 1233 (1370)
Q Consensus 1165 ~vR~aAi~LfG~L~~~~~~~~~~~~~eQ-----------v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~l 1233 (1370)
+||.+|+.+++++++..+.+.-..+-.. .-.+|...++ +|+++.||.++..++...-.-.+-.+..-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il--~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL--KDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH--cCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 4899999999999996333221111111 1123444444 59999999999888766433222211111
Q ss_pred hccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHH
Q 000655 1234 FNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVF 1313 (1370)
Q Consensus 1234 f~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~ 1313 (1370)
+. ..++..+|-.|-..+...+++-+... ..++.-=++ ..+-...-.-+..+++..|=+....--...++
T Consensus 79 -e~---~~~~~~sFtslS~tLa~~i~~lH~~L-----l~~L~~E~~--~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v 147 (182)
T PF13251_consen 79 -EE---SKGPSGSFTSLSSTLASMIMELHRGL-----LLALQAEKS--PPVLTQLLKCLAVLVQATPYHRLPPGLLTEVV 147 (182)
T ss_pred -Hh---cCCCCCCcccHHHHHHHHHHHHHHHH-----HHHHhcccc--cHHHHHHHHHHHHHHccCChhhcCHhHHHHHH
Confidence 11 11345677777777777777643333 222222122 22333344445566666664443333346677
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1314 GLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1314 ~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
+.+.. +..+-|+.||..+.-++|.+.
T Consensus 148 ~~v~~-~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 148 TQVRP-LLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHH-HHhcCCCcHHHHHHHHHHHHH
Confidence 78888 778899999999999998876
No 125
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.22 E-value=4.6 Score=47.37 Aligned_cols=128 Identities=18% Similarity=0.146 Sum_probs=78.4
Q ss_pred CChhHHHHHhhhccCCcch-hhh-hh-HHHHHHHHHhhcccCChhHHHHHHHHHHHHh---------ccCCcCCcchhHH
Q 000655 1082 ESPTVRGLCLRGLVQIPSI-HIH-QY-ATQVLSVILALLDDLDESVQLTAVSCLLTIL---------KSSSKDAVEPILL 1149 (1370)
Q Consensus 1082 ~~~~VR~lsLrGLgnl~~~-~v~-~~-~~~lL~all~~L~d~d~~V~leAm~~L~~lL---------~~l~~~~~~~~l~ 1149 (1370)
.+-.||+-+.-.|.||... +-+ .+ -..-++.+++.+...|.+|..-+-.++++|. ...++
T Consensus 179 kdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep-------- 250 (550)
T KOG4224|consen 179 KDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP-------- 250 (550)
T ss_pred chhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc--------
Confidence 3557888888888888642 110 00 0122566777777778778877777777663 22222
Q ss_pred hHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHH-hhhhHHHHhccCCChhHHHHHHHHHHhh
Q 000655 1150 NLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH-AMLPRLILHIYDDDLSVRQACRNTLKQV 1222 (1370)
Q Consensus 1150 ~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~-~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1222 (1370)
.+.-.+-.+++|.++.+.+-|-.++|.++. +.+.-++-+- ++++.++--|||+--...-+.-+..+.+
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-----dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrni 319 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLAS-----DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNI 319 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcc-----cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhc
Confidence 123334467999999999999999999986 3333444444 4555555566777554444444444333
No 126
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=85.74 E-value=1.3 Score=43.96 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=69.8
Q ss_pred HHHHHhhcCC----CChhHHHHHhhhccCCcc---hhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCc
Q 000655 1072 VEALCRHVSD----ESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAV 1144 (1370)
Q Consensus 1072 i~~L~~~l~D----~~~~VR~lsLrGLgnl~~---~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~ 1144 (1370)
++.+.+-+.| .+..-|+.+++|+|.+-. ..+....+++..++-.+++.+ +....|+++-...+..++..++
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l 90 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDL 90 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHH
Confidence 3444444444 677788999999998753 367788888888888888753 7888899999999999999999
Q ss_pred chhHHhHHhhhcCcCc
Q 000655 1145 EPILLNLSVRLRNLQV 1160 (1370)
Q Consensus 1145 ~~~l~~i~~~lrpffe 1160 (1370)
++++-++..-+.|+++
T Consensus 91 ~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 91 GPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999888888765
No 127
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=85.65 E-value=1.4 Score=43.68 Aligned_cols=88 Identities=16% Similarity=0.272 Sum_probs=70.5
Q ss_pred HHHHHHhhcCCCC--h--hHHHHHhhhccCCcc---hhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCC
Q 000655 1071 MVEALCRHVSDES--P--TVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA 1143 (1370)
Q Consensus 1071 ~i~~L~~~l~D~~--~--~VR~lsLrGLgnl~~---~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~ 1143 (1370)
+++.+.+-+.|++ . .-|+-++|++|.+-. +.+..+.+++..++..+|+ .++....|+++...++..+++.+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 4455666666666 3 338899999997643 4778888999999999997 45699999999999999999999
Q ss_pred cchhHHhHHhhhcCcCc
Q 000655 1144 VEPILLNLSVRLRNLQV 1160 (1370)
Q Consensus 1144 ~~~~l~~i~~~lrpffe 1160 (1370)
+++++-.+.--+.|+++
T Consensus 90 l~~ll~~~~~~i~~~~~ 106 (107)
T smart00802 90 LGPLLDQIFAAILPLWP 106 (107)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999888887777765
No 128
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.61 E-value=10 Score=46.94 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=90.0
Q ss_pred CcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhc--cCCChhHHHHHHHHHHhhchhhhhhhhhhh
Q 000655 1157 NLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHI--YDDDLSVRQACRNTLKQVAPFMEIGVYGIF 1234 (1370)
Q Consensus 1157 pffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL--~D~~~~V~~ack~tL~~~a~lL~w~l~~lf 1234 (1370)
-+..|..+-+|..-+...|- ++++... ...|.=+||. .|.|.+|+.|+--||+-++-
T Consensus 523 ell~d~ds~lRy~G~fs~al--Ay~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~---------- 581 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLAL--AYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCC---------- 581 (926)
T ss_pred HHhcCchHHhhhccHHHHHH--HHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEe----------
Confidence 45667788899886655543 4444333 3567778885 89999999999888775441
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHH
Q 000655 1235 NSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFG 1314 (1370)
Q Consensus 1235 ~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~ 1314 (1370)
.| + + .+ +.+.-...+|..+++|++.|..+|.......++- ...
T Consensus 582 -----~D-~----~-~l------------------v~tvelLs~shN~hVR~g~AvaLGiacag~G~~~--------a~d 624 (926)
T COG5116 582 -----DD-R----D-LL------------------VGTVELLSESHNFHVRAGVAVALGIACAGTGDKV--------ATD 624 (926)
T ss_pred -----cC-c----c-hh------------------hHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH--------HHH
Confidence 11 1 1 11 1111224477889999999999996655544332 334
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHHccccc
Q 000655 1315 LLVVKLSQSADAIVRATCSSSLGWLLKSINSHS 1347 (1370)
Q Consensus 1315 ~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~~ 1347 (1370)
-|.. |-.||...||..|-.|++.+...+|--.
T Consensus 625 iL~~-L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 625 ILEA-LMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred HHHH-HhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 4666 7889999999999999999998887544
No 129
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=85.27 E-value=89 Score=39.19 Aligned_cols=295 Identities=15% Similarity=0.205 Sum_probs=152.7
Q ss_pred HHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccC-cchHHHHHHHHhhhcCCc-hhhHHHHHHHHHHhhcCCCChhHH
Q 000655 1010 INLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRF-QREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESPTVR 1087 (1370)
Q Consensus 1010 ~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~-~Ri~a~af~sELl~~~~~-~~~l~~~~i~~L~~~l~D~~~~VR 1087 (1370)
...+..|++++..+....++.|.+....++...... .|.+|.-++.+.+.++.. .........+.+.+.-.|++---|
T Consensus 8 ~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~ 87 (464)
T PF11864_consen 8 IKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLR 87 (464)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHH
Confidence 355666777777777777888887777777654433 488888888888887654 222223344555555555555667
Q ss_pred HHHhhhccCCcchhhhhhHHHHHHHHHhhcc---------------------------cCChhHHHHHHHHHHHHhcc--
Q 000655 1088 GLCLRGLVQIPSIHIHQYATQVLSVILALLD---------------------------DLDESVQLTAVSCLLTILKS-- 1138 (1370)
Q Consensus 1088 ~lsLrGLgnl~~~~v~~~~~~lL~all~~L~---------------------------d~d~~V~leAm~~L~~lL~~-- 1138 (1370)
.-+|+.|.+=+.. +.-+...+.+-+...|. +.++....+.+.-+.+++..
T Consensus 88 l~aL~~LT~~Grd-i~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~ 166 (464)
T PF11864_consen 88 LEALIALTDNGRD-IDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNF 166 (464)
T ss_pred HHHHHHHHcCCcC-chhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCC
Confidence 7777777654432 11111111111111111 11334455556666666543
Q ss_pred --CCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHH
Q 000655 1139 --SSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACR 1216 (1370)
Q Consensus 1139 --l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack 1216 (1370)
+++..++.++-+++.-.+. ....+++ .+++.+|..+..|+.=+. +.+ .++...|-.. .-+. .-|+
T Consensus 167 ~~l~e~~i~~lv~~i~~iC~~--Ts~~~di-~~~L~vldaii~y~~iP~-~sl-~~~i~vLCsi-~~~~-------~l~~ 233 (464)
T PF11864_consen 167 NYLDEDEISSLVDQICTICKS--TSSEDDI-EACLSVLDAIITYGDIPS-ESL-SPCIEVLCSI-VNSV-------SLCK 233 (464)
T ss_pred CCCCHHHHHHHHHHHHHHHhc--cCcHHHH-HHHHHHHHHHHHcCcCCh-HHH-HHHHHHHhhH-hccc-------ccch
Confidence 3444455444443332211 2223445 677999999988765332 111 1222222221 0000 1111
Q ss_pred HHHHhhchhhhh-hhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhh
Q 000655 1217 NTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSI 1295 (1370)
Q Consensus 1217 ~tL~~~a~lL~w-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l 1295 (1370)
. -| -+..++..|. + ...++.+|..|.+..+.. .+...+-+.|+.|+|.+
T Consensus 234 ~---------~w~~m~nL~~S~~-g-------~~~i~~L~~iL~~~~~~~-------------~~~~~~lRGAv~~l~~l 283 (464)
T PF11864_consen 234 P---------SWRTMRNLLKSHL-G-------HSAIRTLCDILRSPDPQN-------------KRDINVLRGAVFFLRML 283 (464)
T ss_pred h---------HHHHHHHHHcCcc-H-------HHHHHHHHHHHcccCccc-------------cccHHHHhhHHHHHHHH
Confidence 1 23 3344555442 1 245677777774333322 22334444699999987
Q ss_pred hccCchhhhhhccHHH--HHHHHHHHhccCCChhhHHHHHHHHHHHH-----HHccccccc
Q 000655 1296 LCLCDDQHILSLFYTQ--VFGLLVVKLSQSADAIVRATCSSSLGWLL-----KSINSHSWR 1349 (1370)
Q Consensus 1296 ~~~~~~~~~~~~~~e~--l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-----k~~~~~~~~ 1349 (1370)
+-..+.+....+.... +..+|... ++-+++.|-.-.-+.+..+. +-.....|.
T Consensus 284 l~~~~~~~~~~l~~~~~~vl~sl~~a-l~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~ 343 (464)
T PF11864_consen 284 LWGSGEQGYPSLPFSPSSVLPSLLNA-LKSNSPRVDYEILLLINRLLDGKYGRELSEEDWD 343 (464)
T ss_pred HhccccCCcceecccHHHHHHHHHHH-HhCCCCeehHHHHHHHHHHHhHhhhhhhcccCch
Confidence 7666545554554454 89999885 44455555544444444333 333445565
No 130
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.08 E-value=4.2 Score=43.53 Aligned_cols=119 Identities=17% Similarity=0.210 Sum_probs=86.9
Q ss_pred hhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCc------hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcc
Q 000655 1026 KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG------FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS 1099 (1370)
Q Consensus 1026 ~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~------~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~ 1099 (1370)
..++..+..+..+|+|.....|.+++.++...+..+.- ...+++.++..|.+ ++.+.++..++..|+.|-.
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHH
Confidence 47888899999999999999999999988888876421 23445555555544 5567889999999987632
Q ss_pred ----------hhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHh
Q 000655 1100 ----------IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN 1150 (1370)
Q Consensus 1100 ----------~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~ 1150 (1370)
+-.....+.++.+++..+++ +.+...++.+|+.++..- ....+|+.-+
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~-ptt~rp~~~k 155 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH-PTTFRPFANK 155 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC-CccccchHHH
Confidence 12345567888888888765 678889999999999864 3444444433
No 131
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=84.86 E-value=3 Score=41.36 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHH
Q 000655 1122 ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLI 1201 (1370)
Q Consensus 1122 ~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLL 1201 (1370)
..-...++.+++.++. +....+.++..+|.--|+.-.+.+ ++|..|++.+..+.+.-+..+-.++.+|+...++|+.
T Consensus 29 ~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 29 IPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 4577889999999999 778899999999999999998876 9999999999999998777888899999998888864
No 132
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=84.52 E-value=8.8 Score=44.26 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=111.4
Q ss_pred HHHhhhhcccccCcchHHHHHHHHhhhcCC---chhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh--hhhHH
Q 000655 1033 LILTKSINRQQRFQREAAAAALSEFVRYSG---GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI--HQYAT 1107 (1370)
Q Consensus 1033 ~~L~~~L~s~~~~~Ri~a~af~sELl~~~~---~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v--~~~~~ 1107 (1370)
..|.++|.|.++..|.-|+-++++.+..-. ....-.+.+++.+.+++.|. +.+... ++|+..+...+. .....
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMKNFSPESAV 79 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCcCCChhhHH
Confidence 457899999999999999999999998632 23333466889999999654 445555 888877653211 11234
Q ss_pred HHHHHHHhhcccC--ChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCC-hHHHHHHHHHHHHhhccCCCc
Q 000655 1108 QVLSVILALLDDL--DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN-VKMRRNAFAAFGALSNFGVGS 1184 (1370)
Q Consensus 1108 ~lL~all~~L~d~--d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~-~~vR~aAi~LfG~L~~~~~~~ 1184 (1370)
.++.++....+-. -...+......|..++..-.. .+..+--.....+-...+.|+ |.-=.-+|.++-.+.+.-.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~-~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-- 156 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHRE-ALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-- 156 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHH-HHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--
Confidence 4555554433221 135778888888877765211 111111112222333566666 3444567777777765222
Q ss_pred chHHHHHHHH---hhhhHHHHhccCCCh------hHHHHHHHHHHhhchhhhhhhhhhhcc
Q 000655 1185 QREAFLEQIH---AMLPRLILHIYDDDL------SVRQACRNTLKQVAPFMEIGVYGIFNS 1236 (1370)
Q Consensus 1185 ~~~~~~eQv~---~~LvpLLlHL~D~~~------~V~~ack~tL~~~a~lL~w~l~~lf~~ 1236 (1370)
-..+.|+++ .+=.|.-++=--.+| +.+.+.+.+|.....|-.+-+.-++.|
T Consensus 157 -~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleK 216 (262)
T PF14500_consen 157 -ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEK 216 (262)
T ss_pred -cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHH
Confidence 245556644 444566666543343 444555555543233333344555555
No 133
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=84.39 E-value=3.2 Score=53.85 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=94.0
Q ss_pred ChhhHHHHHHHHHhHhh-hcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcC-CchhhHHHHHHHHHHhhcCCC
Q 000655 1005 DKEKWINLIGDVAGCVS-IKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYS-GGFDSLLEQMVEALCRHVSDE 1082 (1370)
Q Consensus 1005 ~~e~~~~gV~lLAr~m~-~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~-~~~~~l~~~~i~~L~~~l~D~ 1082 (1370)
...-|+.|...+-...- +--.|.++.++..++-.|.=++..-|+-+.-.+.-++... .....-+.+++-.|+.--+|+
T Consensus 883 ~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~ 962 (1030)
T KOG1967|consen 883 QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDN 962 (1030)
T ss_pred chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCC
Confidence 34566666655444221 1123578888888888888888888888887777766643 233334466777777766666
Q ss_pred C---hhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHH
Q 000655 1083 S---PTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLL 1133 (1370)
Q Consensus 1083 ~---~~VR~lsLrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~ 1133 (1370)
+ .+||..||++|+.++.. -...|++.++.|+...|||+-.-|+.||..+=.
T Consensus 963 ~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 963 DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 5 89999999999988752 457899999999999999988899999988643
No 134
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=84.07 E-value=1e+02 Score=39.50 Aligned_cols=261 Identities=11% Similarity=0.102 Sum_probs=143.4
Q ss_pred HHHHhhcCCCChhHHHHHhhh---ccCCcchhhhhhHHHHHHHHHhhcccCC-hhHHHHHHHHHHHHhccCCcCCcchhH
Q 000655 1073 EALCRHVSDESPTVRGLCLRG---LVQIPSIHIHQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPIL 1148 (1370)
Q Consensus 1073 ~~L~~~l~D~~~~VR~lsLrG---Lgnl~~~~v~~~~~~lL~all~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~~~~l 1148 (1370)
..|.+.+=.|+.....++..- ++..+..+.-.+-=..|--++..+-... ..+.+..+ |+++...+.+.+-.
T Consensus 269 ~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp~~~~~~~~L~~L--L~Rl~~~m~~~~q~--- 343 (559)
T PF14868_consen 269 RFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLPSSSYQLINLSIL--LRRLFFLMAPDHQS--- 343 (559)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcCCcchhHhhHHHH--HHHHHHhcCHHHHH---
Confidence 356666677888888888886 5555543221111122333444443211 22344444 77777666655433
Q ss_pred HhHHhhhcCc-------------CcCCChHHHHHHHHHHHHhh-----ccCC-CcchHHHHHHHHhhhhHHHHhccCCCh
Q 000655 1149 LNLSVRLRNL-------------QVSMNVKMRRNAFAAFGALS-----NFGV-GSQREAFLEQIHAMLPRLILHIYDDDL 1209 (1370)
Q Consensus 1149 ~~i~~~lrpf-------------fede~~~vR~aAi~LfG~L~-----~~~~-~~~~~~~~eQv~~~LvpLLlHL~D~~~ 1209 (1370)
.+..+..|. |+.=.+++|.-+..=..+.+ ++-. +.....-.++....+-.++-..++...
T Consensus 344 -~~v~~f~p~~~~~n~~lw~~~~~~~L~~~lr~~~~~~i~~~~~~~~~~~~~~~~~s~g~l~~~~~~LsalL~~c~~~~~ 422 (559)
T PF14868_consen 344 -EFVQDFSPSAETENLLLWEGFPLNALSDELRKQIVQEIFTLCFAFCQKWLSPSSCSLGELGQLNFALSALLQVCNSSGS 422 (559)
T ss_pred -HHHHhcCccccccchHHHHhccHHhCCHHHHHHHHHHHHHHHHHHHHHhcccCCcCcchHhHHHHHHHHHHHHhccccc
Confidence 333444444 12233445554442221111 1111 233334456666667777777777766
Q ss_pred hHHHHHHHHHHhhchhhhhhh--hhhhccccCCcCCCCChHHHHHHHHHHHHHhC-cchHHHHHHHHHHhhcC-CChhHH
Q 000655 1210 SVRQACRNTLKQVAPFMEIGV--YGIFNSHCFNSDHRSDYETFVRDLTRQFVQHF-PSRIDSYMGSTIQAFEA-PWPIIQ 1285 (1370)
Q Consensus 1210 ~V~~ack~tL~~~a~lL~w~l--~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~-~~~~~~~l~~~l~y~kS-~~~~IR 1285 (1370)
.+-.....++..+..-+...+ +.+-..+.++ -.+. .+-.+...+.+.. |+.+...+......+++ |-..+|
T Consensus 423 ~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~----~~~~-~lL~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~k 497 (559)
T PF14868_consen 423 TIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQ----QTLS-LLLSLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVK 497 (559)
T ss_pred ccCHHHHHHHHHHHHHHHHHhchhhhccchHHH----HHHH-HHHHHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccch
Confidence 666655555555544332222 2221111000 0112 2223344444444 77777777776677744 445599
Q ss_pred HHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHccc
Q 000655 1286 ANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINS 1345 (1370)
Q Consensus 1286 ~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~ 1345 (1370)
-+++.|+|.+++...++.....-...+..-+-. |+.|.+..|+..|-+|.|+|...+++
T Consensus 498 l~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~-LL~d~~Wll~q~ALeAF~~FAe~T~~ 556 (559)
T PF14868_consen 498 LALLDFLSSLGKLFIPESDQNPVSPALSELFHM-LLADRHWLLHQHALEAFGQFAERTSH 556 (559)
T ss_pred HHHHHHHHHhccccCCccccchhhhHHHHHHHH-HhcCCcHHHHHHHHHHHHHHhccCCc
Confidence 999999999998665444432223445555555 89999999999999999999877765
No 135
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=82.41 E-value=2.4 Score=53.63 Aligned_cols=192 Identities=16% Similarity=0.177 Sum_probs=122.2
Q ss_pred hHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhh
Q 000655 1027 EVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQY 1105 (1370)
Q Consensus 1027 ~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~ 1105 (1370)
....|+-.+.++..+++..-|+.=.--+-.++.+- ..+.+.++++-.+..++.|.|+++|...++.+..++.. --+..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L-t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL-TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc-CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 34455556666666666555654433333333321 23456677889999999999999999999999887753 11123
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcc
Q 000655 1106 ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1185 (1370)
Q Consensus 1106 ~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~ 1185 (1370)
.-.++..+...--|.+..++--.-.+|++|-..+....-..++..=-. | -..|.-..=|.++.-.|-....+= .
T Consensus 406 n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aft--r-alkdpf~paR~a~v~~l~at~~~~---~ 479 (690)
T KOG1243|consen 406 NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFT--R-ALKDPFVPARKAGVLALAATQEYF---D 479 (690)
T ss_pred cHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhh--h-hhcCCCCCchhhhhHHHhhccccc---c
Confidence 344555555554455566777788888888887654433333322222 2 122333456888887777766532 2
Q ss_pred hHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh
Q 000655 1186 REAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1228 (1370)
Q Consensus 1186 ~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w 1228 (1370)
......||.-+++|+.. |++..|+..+..++..+=.-++-
T Consensus 480 ~~~va~kIlp~l~pl~v---d~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 480 QSEVANKILPSLVPLTV---DPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hhhhhhhcccccccccc---CcccchhhHHHHHHHHHHhhhhh
Confidence 33456677777777765 99999999999888887655444
No 136
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=82.10 E-value=27 Score=41.25 Aligned_cols=161 Identities=16% Similarity=0.112 Sum_probs=84.5
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcc---hhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcc
Q 000655 1109 VLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE---PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1185 (1370)
Q Consensus 1109 lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~---~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~ 1185 (1370)
....++..++..|..+...|...|+.++..-+..... ..+..+..-++......+.++...|+.+++.|.+. ...
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~--~~~ 183 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS--KEY 183 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS--HHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc--chh
Confidence 4556667777778889999999999999887766555 45556655666666667788889999999999972 223
Q ss_pred hHHHHH-HHHhhhhHHHHhcc-CCChhHHHHHHHHHHhhchhhhh--hhhhhhccccCCcCCCCChHHHHHHHHHHHHHh
Q 000655 1186 REAFLE-QIHAMLPRLILHIY-DDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQH 1261 (1370)
Q Consensus 1186 ~~~~~e-Qv~~~LvpLLlHL~-D~~~~V~~ack~tL~~~a~lL~w--~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~ 1261 (1370)
+..|.+ .....+++++--.. ..+....+- .+-..-|.=+|-- +..+-+.++ | ++..++..+...
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql-~Y~~ll~lWlLSF~~~~~~~~~~~---------~--~i~~L~~i~~~~ 251 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQL-QYQALLCLWLLSFEPEIAEELNKK---------Y--LIPLLADILKDS 251 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHH-HHHHHHHHHHHTTSHHHHHHHHTT---------S--HHHHHHHHHHH-
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhH-HHHHHHHHHHHhcCHHHHHHHhcc---------c--hHHHHHHHHHhc
Confidence 333333 23334444331000 122222222 2222222211111 222222221 1 667888888888
Q ss_pred CcchHHHHHHHHH-HhhcCCChh
Q 000655 1262 FPSRIDSYMGSTI-QAFEAPWPI 1283 (1370)
Q Consensus 1262 ~~~~~~~~l~~~l-~y~kS~~~~ 1283 (1370)
-.+|+-...-.++ +.+..+...
T Consensus 252 ~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 252 IKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp -SHHHHHHHHHHHHHTTSSSSTT
T ss_pred ccchHHHHHHHHHHHHHhccHHH
Confidence 8999998854444 477766665
No 137
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.90 E-value=1.8e+02 Score=38.14 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=67.4
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHhhhccccccc------chhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Q 000655 763 ATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSET------DVSRTTQSLLSAAVHITDKHLRLETLGAISCLAEN 836 (1370)
Q Consensus 763 ~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~------dV~~I~~~I~~~L~~i~~~~~r~~~l~ai~~La~~ 836 (1370)
++|..++..+.-.+-+....|.+++..++..||.++... -|+.+++.+.. ..+-+|..++=-++.|.+-
T Consensus 122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-----srE~IRNe~iLlL~eL~k~ 196 (970)
T KOG0946|consen 122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-----SREPIRNEAILLLSELVKD 196 (970)
T ss_pred hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-----hhhhhchhHHHHHHHHHcc
Confidence 556666677766677888999999999999999998532 14444444433 2334677777777777755
Q ss_pred cC--ch-hHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCccc-----HHHHHHHHHHHHccC
Q 000655 837 TN--SK-IVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVL-----SFLFLEHLISALNQT 896 (1370)
Q Consensus 837 h~--~~-vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d~~l-----~~~vL~~LL~~L~~~ 896 (1370)
.+ ++ |+|+.. ++|++-++..++.+ +..-|-.|.-.|+++
T Consensus 197 n~~IQKlVAFENa---------------------FerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 197 NSSIQKLVAFENA---------------------FERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred CchHHHHHHHHHH---------------------HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 43 33 444333 45678888777733 333344444444444
No 138
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=81.37 E-value=8.7 Score=48.47 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccccCCcC
Q 000655 1164 VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSD 1242 (1370)
Q Consensus 1164 ~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~~~~~~~~ 1242 (1370)
..+|+||-..|-.+.+.+..-.-..=...|..-||+|+ .||+..|-.+.-.|++... ++. .++.-
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll---~dp~~~i~~~~lgai~NlV--mefs~~ksk--------- 456 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL---MDPEIMIMGITLGAICNLV--MEFSNLKSK--------- 456 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh---hCcchhHHHHHHHHHHHHH--hhcccHHHH---------
Confidence 46788888888877763211000011245667788877 7999888877655555433 111 11111
Q ss_pred CCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhcc
Q 000655 1243 HRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ 1322 (1370)
Q Consensus 1243 ~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~ 1322 (1370)
|+ .+-++.+...|+.+|.+..|+++.|++-.++-+.+.....+.+...-.+.+.. +-.
T Consensus 457 -------fl--------------~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~-l~n 514 (678)
T KOG1293|consen 457 -------FL--------------RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILD-LIN 514 (678)
T ss_pred -------HH--------------HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHH-HHh
Confidence 21 12245667789999999999999999998888887666655555544455666 789
Q ss_pred CCChhhHHHHHHHHHHHH
Q 000655 1323 SADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1323 Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
|||+.|+..+-+-|..|.
T Consensus 515 d~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 515 DPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999998877776654
No 139
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.78 E-value=11 Score=46.59 Aligned_cols=162 Identities=15% Similarity=0.175 Sum_probs=90.2
Q ss_pred hcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc-CcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 000655 1116 LLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL-QVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH 1194 (1370)
Q Consensus 1116 ~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf-fede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~ 1194 (1370)
.+.|.|+..+...|-+++.-----+.-++ .-++.|. ..|.+++||.+|.-++|=++= + +.
T Consensus 524 ll~d~ds~lRy~G~fs~alAy~GTgn~~v-------v~~lLh~avsD~nDDVrRAAViAlGfvc~--~--D~-------- 584 (926)
T COG5116 524 LLYDKDSILRYNGVFSLALAYVGTGNLGV-------VSTLLHYAVSDGNDDVRRAAVIALGFVCC--D--DR-------- 584 (926)
T ss_pred HhcCchHHhhhccHHHHHHHHhcCCcchh-------HhhhheeecccCchHHHHHHHHheeeeEe--c--Cc--------
Confidence 34455555555555555543332222222 2233344 689999999999999998763 1 11
Q ss_pred hhhhHHHHhccCC-ChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHH
Q 000655 1195 AMLPRLILHIYDD-DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGST 1273 (1370)
Q Consensus 1195 ~~LvpLLlHL~D~-~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~ 1273 (1370)
..+|.-+--|.|. |+-||-....+|+..+. +.|. ....++...
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiaca---------------g~G~-----~~a~diL~~---------------- 628 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACA---------------GTGD-----KVATDILEA---------------- 628 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhc---------------CCcc-----HHHHHHHHH----------------
Confidence 2445445455555 88999999999887443 1111 122233332
Q ss_pred HHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccC--CChhhHHHHHHHHH
Q 000655 1274 IQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS--ADAIVRATCSSSLG 1337 (1370)
Q Consensus 1274 l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D--pdp~VR~~Aa~aL~ 1337 (1370)
..+++...+|++|++-.|.++-.-.++.-.+ +..+.+.+.. +-.| ++-.+.--|.-|-|
T Consensus 629 --L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~--v~~I~k~f~~-vI~~Khe~glaklGA~laqG 689 (926)
T COG5116 629 --LMYDTNDFVRQSAMIAVGMILMQCNPELNPN--VKRIIKKFNR-VIVDKHESGLAKLGAVLAQG 689 (926)
T ss_pred --HhhCcHHHHHHHHHHHHHHHHhhcCcccChh--HHHHHHHHHH-HHhhhhHhHHHHHHHHHHhh
Confidence 3367888899999999997754444343322 2444555544 3322 33444444444433
No 140
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=80.59 E-value=30 Score=40.42 Aligned_cols=73 Identities=12% Similarity=-0.055 Sum_probs=57.5
Q ss_pred HHHHHHHhhcCCChh-HHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHc
Q 000655 1269 YMGSTIQAFEAPWPI-IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1343 (1370)
Q Consensus 1269 ~l~~~l~y~kS~~~~-IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1343 (1370)
.+.+...|+++..++ +=+-|..=||..+..+| +-+.-++.-.+...+.. |...|||.||--|-+|+..+-.+.
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P-E~~~vl~Kyg~k~~im~-L~nh~d~~VkfeAl~a~q~~i~~~ 430 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASP-EINAVLSKYGVKEIIMN-LINHDDDDVKFEALQALQTCISSE 430 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc-hHHHHHHHhhhHHHHHH-HhcCCCchhhHHHHHHHHHHHhhh
Confidence 456778899998888 55668888999998887 44444566777788888 889999999999999987765443
No 141
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.58 E-value=36 Score=39.68 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=38.4
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHh
Q 000655 1074 ALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1136 (1370)
Q Consensus 1074 ~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL 1136 (1370)
-+-+-+.++||.||+.|++-+.++..+ -..+|....+..+...+.|.+. .-.|..+|.++-
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnls 70 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLS 70 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHH
Confidence 344556999999999999877665432 2345556667777776666554 334444444443
No 142
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.08 E-value=1.8e+02 Score=40.87 Aligned_cols=291 Identities=13% Similarity=0.126 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHH
Q 000655 976 AILTSFQAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALS 1055 (1370)
Q Consensus 976 ~aleAlk~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~s 1055 (1370)
..++-||.+..| .+.|+.++ .-.+++.-+|.+++.. .+|+.++..-|+-.+.-++
T Consensus 21 ell~rLk~l~~~------l~~~~qd~------~~~~~~~pl~~~l~~~-------------~~L~h~d~dvrllvacCvs 75 (1266)
T KOG1525|consen 21 ELLKRLKKLANC------LASLDQDN------LDLASLLPLADHLIKD-------------FLLKHKDKDVRLLVACCVS 75 (1266)
T ss_pred HHHHHHHHHHHH------HhhcccCc------hhHHHHHHHHHHHhhH-------------HHhcCCCcChhHHHHHHHH
Confidence 567777766643 33344432 4456777778877652 3577888889999999999
Q ss_pred Hhhhc--CCc---hhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhH---HHH---HHHHHhhcccCC-hh
Q 000655 1056 EFVRY--SGG---FDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYA---TQV---LSVILALLDDLD-ES 1123 (1370)
Q Consensus 1056 ELl~~--~~~---~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~---~~l---L~all~~L~d~d-~~ 1123 (1370)
|+++- |.. .. -++.+...+.+ .++|||......-.+|. .++ -.+++ +++.| ++
T Consensus 76 eilRi~aPeaPy~~~-~lkdIf~~~~~------------q~~gL~d~~sp~f~r~~~lletl~~~k~~l~--~~l~d~~e 140 (1266)
T KOG1525|consen 76 EILRIYAPEAPYTDE-QLKDIFQLILS------------QFSGLGDVESPYFKRYFYLLETLAKVKFCLL--MLLEDCQE 140 (1266)
T ss_pred HHHHHhCCCCCCcHH-HHHHHHHHHHH------------HHhhccCCCCcchhhHHHHHHHHHHhHHHhe--eeccchHH
Confidence 99983 322 22 33334333322 34688877543211111 111 11222 22222 44
Q ss_pred HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHh
Q 000655 1124 VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILH 1203 (1370)
Q Consensus 1124 V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlH 1203 (1370)
.+-+-....=+++..--.+.+-. =+.+++.+..-..... . ..|.-++.|
T Consensus 141 ~~~~~f~~f~d~~~~~~~~~v~~-----------------------~~~i~~~li~e~d~v~-----~---e~L~~ll~~ 189 (1266)
T KOG1525|consen 141 LVHELFRTFFDLARKGHPKKVFN-----------------------MLDIAIMLITEEDTVQ-----S---ELLDVLLEN 189 (1266)
T ss_pred HHHHHHHHHHHHHhccccHHHHH-----------------------HHHHHHHHHHhhccch-----H---HHHHHHHHH
Confidence 55555555555554322221111 1222222222111111 0 123334444
Q ss_pred ccCCCh----hHHHHHHHHHHhhchhhhhhhhhhhccccCCcC-CCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhc
Q 000655 1204 IYDDDL----SVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSD-HRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFE 1278 (1370)
Q Consensus 1204 L~D~~~----~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~-~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~k 1278 (1370)
|--+.+ .-..-+..-+.+||.-+...+...+++...... ..++-..++.++.-.|-.--|+.+.-.+-+.-.-+.
T Consensus 190 lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~ 269 (1266)
T KOG1525|consen 190 LVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELL 269 (1266)
T ss_pred hccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 444433 333444455778887666644444444322221 334444555566666666778888888888888899
Q ss_pred CCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1279 APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1279 S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
|.+...|--|+..+|.+......+.- -....++.++.. =..|-++.||..+.+......
T Consensus 270 se~~~~Rl~a~~lvg~~~~~~~~~l~--~~~~~~~~~fl~-r~~D~~~~vR~~~v~~~~~~l 328 (1266)
T KOG1525|consen 270 SEQEEVRLKAVKLVGRMFSDKDSQLS--ETYDDLWSAFLG-RFNDISVEVRMECVESIKQCL 328 (1266)
T ss_pred cchHHHHHHHHHHHHHHHhcchhhhc--ccchHHHHHHHH-HhccCChhhhhhHHHHhHHHH
Confidence 99999999999999998876654433 224668888888 489999999999888766554
No 143
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.43 E-value=16 Score=46.18 Aligned_cols=130 Identities=16% Similarity=0.087 Sum_probs=89.6
Q ss_pred HHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCch----h---hHHHHHHHHHHhhcCCCC
Q 000655 1011 NLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGF----D---SLLEQMVEALCRHVSDES 1083 (1370)
Q Consensus 1011 ~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~----~---~l~~~~i~~L~~~l~D~~ 1083 (1370)
..|.+-..-++.-.|..+-+=++++...|+|..-.-|..-+-+++.++-+...+ + .-+..++..|.+++.|.+
T Consensus 280 k~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~ 359 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTY 359 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccc
Confidence 334444444444455555566778888898888777766655555544432111 1 123458899999999999
Q ss_pred hhHHHHHhhhccCCcc--hhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCC
Q 000655 1084 PTVRGLCLRGLVQIPS--IHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1140 (1370)
Q Consensus 1084 ~~VR~lsLrGLgnl~~--~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~ 1140 (1370)
|.+|--+++|+..+-. .+-..-+..+..-....+.|...-|+-.|+..++++|-.=+
T Consensus 360 py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999999986642 13333345666777788888888999999999999986533
No 144
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=74.31 E-value=65 Score=39.19 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=42.1
Q ss_pred CCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHH
Q 000655 1279 APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1336 (1370)
Q Consensus 1279 S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1336 (1370)
+..|-+|+.|.+|+-.+-+.++.++. ..++..+.. .+++++..|+.-||.|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~l-----~~~~~~l~~-~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQL-----LQIFPLLVN-HLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHHH-----HHHHHHHHH-HTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHHH-----HHHHHHHHH-HhCCCCcchhhhhhhhC
Confidence 56788999999999988888887765 668888999 89999999999999884
No 145
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.33 E-value=3.9 Score=51.86 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=50.9
Q ss_pred HHHHHHHHHh-hcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1267 DSYMGSTIQA-FEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1267 ~~~l~~~l~y-~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
+.-+.+.+.| ..++..++|++|+.-+||++..-| +++...+.. |...-.|-||..||-|||..+
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---------~~~~s~V~l-Lses~N~HVRyGaA~ALGIaC 617 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---------EQLPSTVSL-LSESYNPHVRYGAAMALGIAC 617 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecCh---------hhchHHHHH-HhhhcChhhhhhHHHHHhhhh
Confidence 3345566666 778999999999999999886655 444555565 778899999999999999876
No 146
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=73.10 E-value=12 Score=46.61 Aligned_cols=86 Identities=12% Similarity=0.112 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhCcc---hHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhcc---C
Q 000655 1250 FVRDLTRQFVQHFPS---RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQ---S 1323 (1370)
Q Consensus 1250 f~~~i~k~L~~~~~~---~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~---D 1323 (1370)
|+..|..|.+++.|+ -+.-++...+..+.|+...+|-.....+..+..... ++| |.+++.|..+|.+ |
T Consensus 70 fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~-----eID-e~l~N~L~ekl~~R~~D 143 (885)
T COG5218 70 FLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR-----EID-EVLANGLLEKLSERLFD 143 (885)
T ss_pred HHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc-----hHH-HHHHHHHHHHHHHHHhc
Confidence 455555555555555 344556666778899999999998888877765553 222 6677777665554 9
Q ss_pred CChhhHHHHHHHHHHHHH
Q 000655 1324 ADAIVRATCSSSLGWLLK 1341 (1370)
Q Consensus 1324 pdp~VR~~Aa~aL~~l~k 1341 (1370)
.+|.||.-|..+|.+++.
T Consensus 144 RE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 144 REKAVRREAVKVLCYYQE 161 (885)
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 999999999999999984
No 147
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=73.10 E-value=2.4e+02 Score=34.82 Aligned_cols=132 Identities=13% Similarity=0.157 Sum_probs=96.9
Q ss_pred hhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhc----------CCc----hhhHHHHH
Q 000655 1006 KEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRY----------SGG----FDSLLEQM 1071 (1370)
Q Consensus 1006 ~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~----------~~~----~~~l~~~~ 1071 (1370)
.....+...-++++++-...+....++..++..+.+ .+..+.+|-+| .-++.. ... .+-+...+
T Consensus 247 ~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~-~~~g~~aA~~f-~il~~d~~~~l~~~~~a~vklLykQR~F~~~ 324 (415)
T PF12460_consen 247 RPQALEILIWITKALVMRGHPLATELLDKLLELLSS-PELGQQAAKAF-GILLSDSDDVLNKENHANVKLLYKQRFFTQV 324 (415)
T ss_pred hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC-hhhHHHHHHHH-hhHhcCcHHhcCccccchhhhHHhHHHHHHH
Confidence 344455556678898888778899999999999988 22234444433 333322 111 23344557
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccC
Q 000655 1072 VEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1139 (1370)
Q Consensus 1072 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l 1139 (1370)
+-.|.++.++.+...|.-.+.||+++..+ -+..+.+.++|-++.+|+-.|.++...++.+|..++..-
T Consensus 325 ~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 325 LPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 78889999988888999999999977543 346677899999999998888899999999999999864
No 148
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.68 E-value=56 Score=38.95 Aligned_cols=138 Identities=20% Similarity=0.219 Sum_probs=87.9
Q ss_pred ccccCcchHHHHHHHHhhhcCCchhhHHHH-HHHHHHhhcCCCChhHHHHHhhhccCCcch------hhhhhHHHHHHHH
Q 000655 1041 RQQRFQREAAAAALSEFVRYSGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI------HIHQYATQVLSVI 1113 (1370)
Q Consensus 1041 s~~~~~Ri~a~af~sELl~~~~~~~~l~~~-~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~------~v~~~~~~lL~al 1113 (1370)
+..-.++..|.--+-+++.+-.....+..- -+..+...++++++.+|+.|.+-+|..... .+-.+ -.++.+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~--~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL--GALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc--ccHHHH
Confidence 444555677776677776653322222211 223444488999999999999999977642 22222 245666
Q ss_pred HhhcccCC-hhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcC--CChHHHHHHHHHHHHhhcc
Q 000655 1114 LALLDDLD-ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS--MNVKMRRNAFAAFGALSNF 1180 (1370)
Q Consensus 1114 l~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffed--e~~~vR~aAi~LfG~L~~~ 1180 (1370)
+..|...+ ..+.-.|+.+++.++..-....-.-+.++=..-|++..++ .+..++..|+.|++.|..-
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 66666333 4588999999999988644332222222223445777887 6777888999999999973
No 149
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=72.14 E-value=40 Score=40.28 Aligned_cols=186 Identities=18% Similarity=0.108 Sum_probs=102.9
Q ss_pred hHHHHHHHHhhhhcc-cccCcchHHH-HHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcc----h
Q 000655 1027 EVQTICLILTKSINR-QQRFQREAAA-AALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----I 1100 (1370)
Q Consensus 1027 ~~~~i~~~L~~~L~s-~~~~~Ri~a~-af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~----~ 1100 (1370)
.-..|+..+.|++.. .+|.-....+ +|+..+..- ...+.+.+++.+.++++|..+.||+.-++.+|++.. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 567889999999887 3344344333 333333222 345567889999999999999999999999998753 4
Q ss_pred hhhhhHHHHHHHHHhhcccCC----hh----HHHHHHHHHHHHhccCCcCC---------------cchhHHhHHhhhcC
Q 000655 1101 HIHQYATQVLSVILALLDDLD----ES----VQLTAVSCLLTILKSSSKDA---------------VEPILLNLSVRLRN 1157 (1370)
Q Consensus 1101 ~v~~~~~~lL~all~~L~d~d----~~----V~leAm~~L~~lL~~l~~~~---------------~~~~l~~i~~~lrp 1157 (1370)
....+...+++.++..+++.. .. ....|.-.+. +....... -.+++++- .
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~-----k 168 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA--LSSWKLDKIDSKNISFWSLALDPKPSFLLSE-----K 168 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH--hccccchhhhhhhhhhhhhccCCCcchhcCH-----H
Confidence 444555666666666665421 11 1223333333 11000000 01111111 1
Q ss_pred cCcC-CChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhc
Q 000655 1158 LQVS-MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA 1223 (1370)
Q Consensus 1158 ffed-e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1223 (1370)
++.+ -.++--...++++-.+...-.............+.++-++.|-+ ..+.||+.|..++.++.
T Consensus 169 vyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~-~~~~vR~~A~~~l~~l~ 234 (339)
T PF12074_consen 169 VYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSN-VSWKVRRAALSALKKLY 234 (339)
T ss_pred HHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 1222 22222233334433333321111222226778899999998732 26789999999988755
No 150
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=71.73 E-value=9.3 Score=41.57 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=53.3
Q ss_pred HHHHhhcccC-ChhHHHHHHHHHHHHhccCCcCCcc-hhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhcc
Q 000655 1111 SVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVE-PILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNF 1180 (1370)
Q Consensus 1111 ~all~~L~d~-d~~V~leAm~~L~~lL~~l~~~~~~-~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~ 1180 (1370)
.+++..|... +..+....+++|+-++..-.-..+. .++..+...++|+..+-+.+||.+|...+|.|...
T Consensus 104 ~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 104 RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 3445555543 4567778888999888765544433 56677888899999999999999999999999873
No 151
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=71.54 E-value=3.8e+02 Score=36.54 Aligned_cols=481 Identities=17% Similarity=0.126 Sum_probs=224.1
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchh
Q 000655 762 VATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKI 841 (1370)
Q Consensus 762 ~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i~~~~~r~~~l~ai~~La~~h~~~v 841 (1370)
.-++..++++|.|.+......||.-+.-+...-..+| +.+.++++.....-...+.+..+..-|+--||..-
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L----ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG---- 411 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL----ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG---- 411 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH----HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC----
Confidence 3467889999999999999999988877776655566 33344444443333334444444443333333321
Q ss_pred HHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchH
Q 000655 842 VFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDI 921 (1370)
Q Consensus 842 V~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 921 (1370)
-+.+.-++.++..+...-.|++. .|. +++..++-+
T Consensus 412 --------------------------------------lLlps~l~dVvplI~kaL~Yd~~--~G~---~s~G~~VRD-- 446 (1133)
T KOG1943|consen 412 --------------------------------------LLLPSLLEDVVPLILKALHYDVR--RGQ---HSVGQHVRD-- 446 (1133)
T ss_pred --------------------------------------CcchHHHHHHHHHHHHHhhhhhh--hcc---cccccchHH--
Confidence 11222233334444444455542 111 111122222
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCC--CC---------C---CC---ChH----------
Q 000655 922 LQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLA--SS---------G---QH---EPL---------- 974 (1370)
Q Consensus 922 ~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~--~~---------~---~~---~P~---------- 974 (1370)
||--..+.+-++- ....++.+.-+|+.+||.-.-+=-+++ .+ | +. -+.
T Consensus 447 --aAcY~~WAf~Ray---s~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~ 521 (1133)
T KOG1943|consen 447 --AACYVCWAFARAY---SPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVT 521 (1133)
T ss_pred --HHHHHHHHHHhcC---ChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhh
Confidence 3333333333433 345566666667777766554422220 00 0 00 000
Q ss_pred --HHHHHHHHHHHHh-hcc-hHHHHHHHhc--CCCCChhhHHHHHHHHHhHhhhcCchhHH-HHHHHHhhhhcccccCcc
Q 000655 975 --RAILTSFQAFCEC-VGD-LEMRKILARD--GEQNDKEKWINLIGDVAGCVSIKRPKEVQ-TICLILTKSINRQQRFQR 1047 (1370)
Q Consensus 975 --~~aleAlk~ll~~-~g~-~~~~~~L~~~--g~W~~~e~~~~gV~lLAr~m~~~~~~~~~-~i~~~L~~~L~s~~~~~R 1047 (1370)
+.+...+...+.. .|+ ..+++++-.. --|+..-.+.-|..+ .+ +++..|.++. ..+--+++...++...-|
T Consensus 522 ~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL-~~-Ls~~~pk~~a~~~L~~lld~~ls~~~~~r 599 (1133)
T KOG1943|consen 522 NRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL-HK-LSLTEPKYLADYVLPPLLDSTLSKDASMR 599 (1133)
T ss_pred hhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH-HH-HHHhhHHhhcccchhhhhhhhcCCChHHh
Confidence 1112222221111 111 1234444433 246644444333333 33 6666776665 455566667777788888
Q ss_pred hHHHHHHHHhhhcCCch----hhHHHHHHHHH-------HhhcCCCC--hhHHHHHhhhccCCcchhhhhhHHHHHHHHH
Q 000655 1048 EAAAAALSEFVRYSGGF----DSLLEQMVEAL-------CRHVSDES--PTVRGLCLRGLVQIPSIHIHQYATQVLSVIL 1114 (1370)
Q Consensus 1048 i~a~af~sELl~~~~~~----~~l~~~~i~~L-------~~~l~D~~--~~VR~lsLrGLgnl~~~~v~~~~~~lL~all 1114 (1370)
..++...+|++.....- ..+.++.+.-+ ....-+.- ..+|..-++++-++...+++-....+.+..-
T Consensus 600 ~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~ 679 (1133)
T KOG1943|consen 600 HGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQ 679 (1133)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 88888888887753221 11222222222 22111111 4556666665555543333322222222211
Q ss_pred hhc----ccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhh-hcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHH
Q 000655 1115 ALL----DDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVR-LRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAF 1189 (1370)
Q Consensus 1115 ~~L----~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~-lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~ 1189 (1370)
..+ .+.+ .+.-+|..+++.+....-..+-+... .+..+ |--.=+.-...+|..-+-..|.+..+.- ...+
T Consensus 680 ~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~-~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i---~~~~ 754 (1133)
T KOG1943|consen 680 MLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEA-PLITRYLSRLTKCSEERIRRGLILALGVLPSELI---HRHL 754 (1133)
T ss_pred HHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhh---chHH
Confidence 111 1222 46677777777775432222111111 12122 2222233367788888888888775311 1112
Q ss_pred HHHHHhhhhHHHHhccCC--ChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHH
Q 000655 1190 LEQIHAMLPRLILHIYDD--DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRID 1267 (1370)
Q Consensus 1190 ~eQv~~~LvpLLlHL~D~--~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~ 1267 (1370)
++.+ -.++++..-. .+.-++..-.++.+...-.+ ..++. -++++|.+.+.++|-.
T Consensus 755 q~~l----c~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~---~~~~~---------~~~~k~~e~LL~~ldd------- 811 (1133)
T KOG1943|consen 755 QEKL----CKLVLELLPSDAWAEARQQNVKALAHVCKTVT---SLLFS---------ESIEKFRETLLNALDD------- 811 (1133)
T ss_pred HHHH----HHHHhccCcccccHHHHHHHHHHHHHHHHHHH---Hhhcc---------ccHHHHHHHHHHHHhh-------
Confidence 2222 4445554433 34444544444444332222 11221 2356676665554433
Q ss_pred HHHHHHHHhhcCCChh----HHHHHHHHHhhhhccCc-hhhhhhccHHHHHHHHHHHhccCCCh---hhHHHHHHHHHHH
Q 000655 1268 SYMGSTIQAFEAPWPI----IQANAIYFSSSILCLCD-DQHILSLFYTQVFGLLVVKLSQSADA---IVRATCSSSLGWL 1339 (1370)
Q Consensus 1268 ~~l~~~l~y~kS~~~~----IR~aA~~fiG~l~~~~~-~~~~~~~~~e~l~~~L~~~Ll~Dpdp---~VR~~Aa~aL~~l 1339 (1370)
|.-+.+-+ ||.+|+.-+-.+.-... +.. +|-+.+...... +.+-+-+ ..|..|+.++..+
T Consensus 812 --------Yttd~rGDVGswVReaAm~al~~~~~~l~~p~~---ld~~~i~~~~~~-~vqQ~veKIdrlre~a~~~~~qi 879 (1133)
T KOG1943|consen 812 --------YTTDSRGDVGSWVREAAMKALSSLLDTLSSPKL---LDEDSINRIIRY-FVQQAVEKIDRLRELAASALNQI 879 (1133)
T ss_pred --------cccccCccHHHHHHHHHHHHHHhhhhhhcCccc---ccHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHhce
Confidence 66666644 68888877765543333 222 233344444443 3332332 3366666666555
Q ss_pred HHH
Q 000655 1340 LKS 1342 (1370)
Q Consensus 1340 ~k~ 1342 (1370)
...
T Consensus 880 ~~~ 882 (1133)
T KOG1943|consen 880 VVH 882 (1133)
T ss_pred eec
Confidence 433
No 152
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=70.22 E-value=23 Score=41.41 Aligned_cols=210 Identities=20% Similarity=0.220 Sum_probs=111.5
Q ss_pred HhhhccCCcch-----hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHh--HHhhhcCcCcCC
Q 000655 1090 CLRGLVQIPSI-----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLN--LSVRLRNLQVSM 1162 (1370)
Q Consensus 1090 sLrGLgnl~~~-----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~--i~~~lrpffede 1162 (1370)
|.=+|.|++++ |+--. ...+|-++..|.+.+.+|.-.|+.+|++|-.-. .+.+.+.++ ...-+..+|...
T Consensus 135 AaWalTNiaSGtt~QTkvVvd-~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS--~~~RD~vL~~galeplL~ll~ss 211 (526)
T COG5064 135 AAWALTNIASGTTQQTKVVVD-AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDS--EGCRDYVLQCGALEPLLGLLLSS 211 (526)
T ss_pred HHHHHhhhccCcccceEEEEe-CCchHHHHHHHcCchHHHHHHHHHHhccccCCc--hhHHHHHHhcCchHHHHHHHHhc
Confidence 44456777765 22111 234677888888889999999999999997532 222222111 001111223332
Q ss_pred Ch--HHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHH-HHHHHHHHhhchhhhhhhhhhhccccC
Q 000655 1163 NV--KMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVR-QACRNTLKQVAPFMEIGVYGIFNSHCF 1239 (1370)
Q Consensus 1163 ~~--~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~-~ack~tL~~~a~lL~w~l~~lf~~~~~ 1239 (1370)
.. .+=..|-=.+..|++ |+...+=-.-+.++++-|---+.-.+++|. .|| .|+-- +.
T Consensus 212 ~~~ismlRn~TWtLSNlcR---GknP~P~w~~isqalpiL~KLiys~D~evlvDA~-WAiSY-----------ls----- 271 (526)
T COG5064 212 AIHISMLRNATWTLSNLCR---GKNPPPDWSNISQALPILAKLIYSRDPEVLVDAC-WAISY-----------LS----- 271 (526)
T ss_pred cchHHHHHHhHHHHHHhhC---CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHH-HHHHH-----------hc-----
Confidence 22 222334445566655 554444333444454444333344455554 444 33322 21
Q ss_pred CcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHH
Q 000655 1240 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVK 1319 (1370)
Q Consensus 1240 ~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~ 1319 (1370)
|+. .+ .+-..+-.-.|.+ .+..+.+|...|..-|..-+|-++--.+.|-.--++ -...++|..
T Consensus 272 -Dg~----~E---~i~avld~g~~~R-------LvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~- 334 (526)
T COG5064 272 -DGP----NE---KIQAVLDVGIPGR-------LVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRS- 334 (526)
T ss_pred -cCc----HH---HHHHHHhcCCcHH-------HHHHhcCccccccCHHHHhhcCeeecCccceehhee-cccHHHHHH-
Confidence 110 00 0111112223344 234555577778888888899887666544322222 225678888
Q ss_pred hccCCChhhHHHHHHHHHHH
Q 000655 1320 LSQSADAIVRATCSSSLGWL 1339 (1370)
Q Consensus 1320 Ll~Dpdp~VR~~Aa~aL~~l 1339 (1370)
|+..|-..+|+-|..|++.+
T Consensus 335 lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 335 LLSSPKENIRKEACWTISNI 354 (526)
T ss_pred HhcChhhhhhhhhheeeccc
Confidence 78889999999887776543
No 153
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=69.89 E-value=5.5 Score=31.94 Aligned_cols=29 Identities=31% Similarity=0.242 Sum_probs=25.6
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1311 QVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1311 ~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
..+..|.. |++++++.||..|+.||+.|-
T Consensus 12 g~i~~Lv~-ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQ-LLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHH-HTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHcCCCHHHHHHHHHHHHHHh
Confidence 36778999 899999999999999999874
No 154
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=69.81 E-value=49 Score=39.12 Aligned_cols=169 Identities=12% Similarity=0.057 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHH
Q 000655 1123 SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL 1202 (1370)
Q Consensus 1123 ~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLl 1202 (1370)
-|=..|+.+-..|+..++...+..-+-=.+.-|.|||..-+-.||..-+.+|-+-.= +....++-.+...+..|+-
T Consensus 70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~l----pL~~~L~p~l~~li~slLp 145 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYL----PLGPALRPCLKGLILSLLP 145 (307)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc----CccHHHHHHHHHHHHHhcc
Confidence 377788888888888888776554444445667899999999999999999988442 2223677777788888888
Q ss_pred hccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCCh
Q 000655 1203 HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWP 1282 (1370)
Q Consensus 1203 HL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~ 1282 (1370)
=|.|++.++-..+-..+..+..- .++ +.|+..+|.+++. .+
T Consensus 146 GLede~sE~~~~~~~ll~~l~~~-------------v~~------~~F~~~lwl~ii~--------------------sp 186 (307)
T PF04118_consen 146 GLEDEGSEFFDRTLKLLDKLKEA-------------VGD------KYFWQCLWLCIIT--------------------SP 186 (307)
T ss_pred ccccCCchHHHHHHHHHHHHHHh-------------cCh------hHHHHHHHHHHhc--------------------Cc
Confidence 89999999888776655554321 111 3577777777764 34
Q ss_pred hHHHHHHHHHhhhhccCc----------hhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHH
Q 000655 1283 IIQANAIYFSSSILCLCD----------DQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSS 1335 (1370)
Q Consensus 1283 ~IR~aA~~fiG~l~~~~~----------~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~a 1335 (1370)
.+|..|-.|+-....... .+..-..+.+.+++++.. .++|++..|++.+-.-
T Consensus 187 ~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~-~L~D~~iLVqR~~LDl 248 (307)
T PF04118_consen 187 SRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCA-CLEDENILVQRGFLDL 248 (307)
T ss_pred chhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHH-HhCCchHHHHHHHHHH
Confidence 566666665553332211 111122356779999999 7999999999965443
No 155
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=69.66 E-value=1e+02 Score=42.84 Aligned_cols=212 Identities=16% Similarity=0.146 Sum_probs=125.9
Q ss_pred HHH-HHHHHHHHHHhcCCcchHHHHHHh-----hHHHHHHHHHHhhh-ccc-CCCC-------------------CC---
Q 000655 921 ILQ-AAILALTAFFRGGGKVGKKAVEKS-----YAPVLAALTLQLGS-CHG-LASS-------------------GQ--- 970 (1370)
Q Consensus 921 ~~l-aA~~aL~Ell~~~~~~~~~av~~~-----fp~Lf~aLL~ql~~-~~~-~~~~-------------------~~--- 970 (1370)
-++ ||+|+|--+=+.. |+|.++.++ .|+ |+|+-| .+| .... |.
T Consensus 313 H~lcaA~~~lMK~SFDE--EhR~aM~ELG~LqAIae-----Ll~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~N 385 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSFDE--EHRHAMNELGGLQAIAE-----LLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVAN 385 (2195)
T ss_pred hhhHHHHHHHHHhhccH--HHHHHHHHhhhHHHHHH-----HHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccc
Confidence 356 9999999888877 899888643 344 444444 444 2111 10
Q ss_pred ---CChHHHHHHHHHHHHHhh--cchHHHHHHHhcCCCC----ChhhHHHH--HHHHHhHhhhcC-chhHHHHHHHHhhh
Q 000655 971 ---HEPLRAILTSFQAFCECV--GDLEMRKILARDGEQN----DKEKWINL--IGDVAGCVSIKR-PKEVQTICLILTKS 1038 (1370)
Q Consensus 971 ---~~P~~~aleAlk~ll~~~--g~~~~~~~L~~~g~W~----~~e~~~~g--V~lLAr~m~~~~-~~~~~~i~~~L~~~ 1038 (1370)
+--.+-+++|+=+-|... ...+|.+-+-++=.|. ..+.+.+. |+.||.|-.+.+ ..-++.|+..|+.+
T Consensus 386 Ka~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNL 465 (2195)
T KOG2122|consen 386 KATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNL 465 (2195)
T ss_pred hhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhh
Confidence 111123344433333221 2334445555566797 33333333 556677655554 36799999999988
Q ss_pred hcccccCcch-----HHHHHHHHhhhcC--C------------------------c-hhhHHHH-HHHHHHhhcCCCChh
Q 000655 1039 INRQQRFQRE-----AAAAALSEFVRYS--G------------------------G-FDSLLEQ-MVEALCRHVSDESPT 1085 (1370)
Q Consensus 1039 L~s~~~~~Ri-----~a~af~sELl~~~--~------------------------~-~~~l~~~-~i~~L~~~l~D~~~~ 1085 (1370)
--...+..+- -|.+|++-+|.+- . . .+.+.+. ++.+|++.|+..+-+
T Consensus 466 SAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLT 545 (2195)
T KOG2122|consen 466 SAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLT 545 (2195)
T ss_pred hhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceE
Confidence 3333333322 2568888877642 0 0 1233333 778889999999988
Q ss_pred HHHHHhhhccCCcch--hhhhhH--HHHHHHHHhhcccCChhHHHHHHHHHHHHhccC
Q 000655 1086 VRGLCLRGLVQIPSI--HIHQYA--TQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1139 (1370)
Q Consensus 1086 VR~lsLrGLgnl~~~--~v~~~~--~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l 1139 (1370)
|-.=++-.|.|+.-. +..++. ...++-+.+.+..++.-|++.+..+|.++|+.=
T Consensus 546 iVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 546 IVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred EeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 888888889998642 221111 122344555566677889999999999999864
No 156
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=69.34 E-value=35 Score=43.90 Aligned_cols=178 Identities=16% Similarity=0.166 Sum_probs=107.6
Q ss_pred HHHHHHHHhhhhcccccCcchHHHHHHHHh---hhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhh
Q 000655 1028 VQTICLILTKSINRQQRFQREAAAAALSEF---VRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIH 1103 (1370)
Q Consensus 1028 ~~~i~~~L~~~L~s~~~~~Ri~a~af~sEL---l~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~ 1103 (1370)
.+.|+-.+.|.++-++ -+=+.+|+-|- |..-...+.+.+.++..|...++|++..++..+|++++.++.- ++.
T Consensus 347 ~~~~~p~l~pi~~~~~---~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~ 423 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASD---PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP 423 (700)
T ss_pred hhhhhHHHHHHhccCC---cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH
Confidence 3444444555555422 22233455553 3333335677788999999999999999999999999998754 443
Q ss_pred hhHHHHHHHHHhhcccC-ChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCC
Q 000655 1104 QYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1182 (1370)
Q Consensus 1104 ~~~~~lL~all~~L~d~-d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1182 (1370)
--.+.+++.+....... +-.|...++-+++.+++.++...+-..++-+...++ -.++.+=..=..+|-.+.-.-.
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~----~~dp~iv~~~~~i~~~l~~~~~ 499 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIK----TRDPAIVMGFLRIYEALALIIY 499 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHhhcc
Confidence 34466777776654332 346888899999999988876655555544443332 1234555555566666664211
Q ss_pred CcchHHHHHHHHhhhhHHHHhccCCChhHHHHHH
Q 000655 1183 GSQREAFLEQIHAMLPRLILHIYDDDLSVRQACR 1216 (1370)
Q Consensus 1183 ~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack 1216 (1370)
+. ++.+-+||.-.++||.. -+.-.+.+=|+
T Consensus 500 ~g-~ev~~~~VlPlli~ls~---~~~L~~~Qy~~ 529 (700)
T KOG2137|consen 500 SG-VEVMAENVLPLLIPLSV---APSLNGEQYNK 529 (700)
T ss_pred cc-eeeehhhhhhhhhhhhh---cccccHHHHHH
Confidence 11 45666666655555443 33344444443
No 157
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=69.10 E-value=27 Score=38.07 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=67.5
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhc
Q 000655 1107 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1179 (1370)
Q Consensus 1107 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1179 (1370)
...|+-+.+||.+.+++-..-|..|..+++..-..+.+-+++.++..-||.-++..+++|..++..+.-.|+.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999956677889999999999999999999999999999999965
No 158
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.04 E-value=3.9e+02 Score=35.68 Aligned_cols=328 Identities=15% Similarity=0.203 Sum_probs=153.9
Q ss_pred CCChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcc----hHHHHHHHHhhhcCCchhhHHHHHHHHHHhh
Q 000655 1003 QNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQR----EAAAAALSEFVRYSGGFDSLLEQMVEALCRH 1078 (1370)
Q Consensus 1003 W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~R----i~a~af~sELl~~~~~~~~l~~~~i~~L~~~ 1078 (1370)
|...|+-.-+...+|-.+.....+++++.++.....--|....+= ..-++.+++.+.. ....+...+..|.++
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e---~P~~ln~sl~~L~~~ 557 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGE---HPMYLNPSLPLLFQG 557 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhc---CCcccCchHHHHHHH
Confidence 444455555555555555555555566555544333222221111 1112233333322 112233445566666
Q ss_pred cCCCChhHHHHHhhhccCCcc---hhhhhhHHHHHHHHHhhcccCC--hhHHHHHHHHHHHHhccCCcCCcchhHHhHHh
Q 000655 1079 VSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLD--ESVQLTAVSCLLTILKSSSKDAVEPILLNLSV 1153 (1370)
Q Consensus 1079 l~D~~~~VR~lsLrGLgnl~~---~~v~~~~~~lL~all~~L~d~d--~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~ 1153 (1370)
+..+...+... -+|..+.. .+...|....+.++-+.+-..+ ..+.+..|.++|.++..+..+..-..+..|..
T Consensus 558 Lh~sk~s~q~i--~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin 635 (982)
T KOG2022|consen 558 LHNSKESEQAI--STLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLIN 635 (982)
T ss_pred hcCchHHHHHH--HHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Confidence 65443333322 22333322 2556777777777777765533 46888888888888887763322222222211
Q ss_pred ----hhcCc----Cc------------------------------CC-------------ChHHHHHHHHHHHHhhcc--
Q 000655 1154 ----RLRNL----QV------------------------------SM-------------NVKMRRNAFAAFGALSNF-- 1180 (1370)
Q Consensus 1154 ----~lrpf----fe------------------------------de-------------~~~vR~aAi~LfG~L~~~-- 1180 (1370)
++.+. .+ .| =-.||.-+|-.|-++...
T Consensus 636 ~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~ 715 (982)
T KOG2022|consen 636 PILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWL 715 (982)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence 11111 11 11 123455666666555431
Q ss_pred ---------------CCCcchHHHHHHHHhhhhHHHHhccCCChhHH----H---HHHHHHHhhchhhhhhhhhhhccc-
Q 000655 1181 ---------------GVGSQREAFLEQIHAMLPRLILHIYDDDLSVR----Q---ACRNTLKQVAPFMEIGVYGIFNSH- 1237 (1370)
Q Consensus 1181 ---------------~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~----~---ack~tL~~~a~lL~w~l~~lf~~~- 1237 (1370)
+.....++|-+.....+-+.+......+..|. . -|+++-..|.++.+-.....|++.
T Consensus 716 ~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl 795 (982)
T KOG2022|consen 716 GLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSL 795 (982)
T ss_pred cchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 11122233444444444555554333333332 1 234444445555555333333322
Q ss_pred -cCCcCC---CCC-hHHHHHHHHHHHHHhCcchHH-------HHH-HHHHHhhcCCChhHHHHHHHHHhhhhccCch---
Q 000655 1238 -CFNSDH---RSD-YETFVRDLTRQFVQHFPSRID-------SYM-GSTIQAFEAPWPIIQANAIYFSSSILCLCDD--- 1301 (1370)
Q Consensus 1238 -~~~~~~---~l~-~~~f~~~i~k~L~~~~~~~~~-------~~l-~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~--- 1301 (1370)
.++++- ..+ |.+|+. +.+...+..|+-.. .++ ..++..+++|-+..=+||+.|+-.++.....
T Consensus 796 ~lf~~~~f~n~~Di~~~~~~-~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~ 874 (982)
T KOG2022|consen 796 LLFEQHPFSNQPDIYLQLIG-FVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHDL 874 (982)
T ss_pred HHHhccCCCCCchHHHHHHH-HHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccchh
Confidence 111111 111 345544 44444555555432 244 4888999999988555566665544443322
Q ss_pred ----hhhhhccHHHHHHHHHHHhccC-CChhhHHHHHHHHH
Q 000655 1302 ----QHILSLFYTQVFGLLVVKLSQS-ADAIVRATCSSSLG 1337 (1370)
Q Consensus 1302 ----~~~~~~~~e~l~~~L~~~Ll~D-pdp~VR~~Aa~aL~ 1337 (1370)
+...+++...+++.++. +-.- +-|.|-+.|-.=+.
T Consensus 875 ~tv~~~V~~~G~~Li~~im~~-vgg~~~RS~ld~~aDIL~a 914 (982)
T KOG2022|consen 875 VTVTSVVAEIGPILIYAIMRG-VGGEASRSTLDALADILLA 914 (982)
T ss_pred HHHHHHHHhcchHHHHHHHHH-hcCcCccchhHHHHHHHHH
Confidence 22234455556666666 4433 35666555544333
No 159
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.66 E-value=10 Score=44.04 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=46.0
Q ss_pred HHHHHHhhcCCChhHHHHHH-HHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1270 MGSTIQAFEAPWPIIQANAI-YFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1270 l~~~l~y~kS~~~~IR~aA~-~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
+...+.|++|++|++|.+|+ ..+|+.+. +.+-. .-+.+..+.++.. |.+|++| -.-|++||..+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~-~~~~~~~lk~l~q-L~~~~~~--~~~a~~alVnls 70 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSL-SKYSEALLKDLTQ-LLKDLDP--AEPAATALVNLS 70 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhh-ccchhhhHHHHHH-HccCccc--ccHHHHHHHHHH
Confidence 45568899999999999998 44566655 22222 2345778888888 8999999 555666766654
No 160
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=68.34 E-value=16 Score=36.33 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHH
Q 000655 1124 VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRL 1200 (1370)
Q Consensus 1124 V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpL 1200 (1370)
-...++.+++.++.. ....+.+.+.+|+--|+.-++. +++|..|++....+.+.-+..+-.++.+|+...++|.
T Consensus 31 ek~~~i~ai~~lI~~-~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 31 EKKRALRSIGFLIKL-MGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 477888889888885 4578999999999999999974 5799999999999999777778888889988888775
No 161
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=67.12 E-value=1.6e+02 Score=35.86 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=82.4
Q ss_pred HHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhHHHHHH-HHHhhcccC--ChhHHHHHHHHHHHHhccCCcCCc
Q 000655 1070 QMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVLS-VILALLDDL--DESVQLTAVSCLLTILKSSSKDAV 1144 (1370)
Q Consensus 1070 ~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~~~~~lL~-all~~L~d~--d~~V~leAm~~L~~lL~~l~~~~~ 1144 (1370)
..+..+...+-++++.||..++|-+--+... -+....+.=++ -+.-+|+-. .+.=+.+|+.-.+++++.- ++.
T Consensus 25 ~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~--~~~ 102 (371)
T PF14664_consen 25 FFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK--KGP 102 (371)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc--CCc
Confidence 3344444344455599999999977544321 11111110011 123334332 2345667888888888763 244
Q ss_pred chhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHh
Q 000655 1145 EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQ 1221 (1370)
Q Consensus 1145 ~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~ 1221 (1370)
..+...++..|-..-|++++.+|..|++.+.+++-... .+.- -.+++-+|+--+.|...+++..+-.++..
T Consensus 103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P-----~lv~-~~gG~~~L~~~l~d~~~~~~~~l~~~lL~ 173 (371)
T PF14664_consen 103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP-----ELVA-ECGGIRVLLRALIDGSFSISESLLDTLLY 173 (371)
T ss_pred ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH-----HHHH-HcCCHHHHHHHHHhccHhHHHHHHHHHHH
Confidence 44566677777777888999999999999999885210 0000 01344555555667666666666555554
No 162
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=66.51 E-value=12 Score=45.41 Aligned_cols=119 Identities=20% Similarity=0.133 Sum_probs=81.1
Q ss_pred HHHhhcCCCChhHHHHHhhhccCCcch----hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCC------
Q 000655 1074 ALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA------ 1143 (1370)
Q Consensus 1074 ~L~~~l~D~~~~VR~lsLrGLgnl~~~----~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~------ 1143 (1370)
++..--.+.|..||..|+|++|-...| ...-+....-++++..+.|+.=.++..|..++++|-+.+-...
T Consensus 395 Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~ 474 (728)
T KOG4535|consen 395 FLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSF 474 (728)
T ss_pred HHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHH
Confidence 333333446888999999999977554 4556677778889999998878899999999999966443221
Q ss_pred ---cchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 000655 1144 ---VEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ 1192 (1370)
Q Consensus 1144 ---~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ 1192 (1370)
++..++.=..+.-..=+-.++.||..|++.+|.+..+...-.+-.+.+-
T Consensus 475 ~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~ 526 (728)
T KOG4535|consen 475 QERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEI 526 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHH
Confidence 1122222233334455668899999999999999886443333334333
No 163
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=65.54 E-value=54 Score=41.57 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=89.9
Q ss_pred HHHHHHHhhcccC--ChhHHHHHHHHH---HHHhccCCcCCcchhHHhHHhhhcCcCc--------CCChHHHHHHHHHH
Q 000655 1108 QVLSVILALLDDL--DESVQLTAVSCL---LTILKSSSKDAVEPILLNLSVRLRNLQV--------SMNVKMRRNAFAAF 1174 (1370)
Q Consensus 1108 ~lL~all~~L~d~--d~~V~leAm~~L---~~lL~~l~~~~~~~~l~~i~~~lrpffe--------de~~~vR~aAi~Lf 1174 (1370)
.++..+..||... +.++...+|.-. ..++...+..-+..+...|--+++|..+ .+....|..|-+.+
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 3344444444443 223333333333 4445444444444444555555566663 46789999999999
Q ss_pred HHhhccCCCcc--hHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccccCCcCCCCChHHHH
Q 000655 1175 GALSNFGVGSQ--REAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFV 1251 (1370)
Q Consensus 1175 G~L~~~~~~~~--~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~~~~~~~~~~l~~~~f~ 1251 (1370)
|.|++.....- .-.+.+.++.+ |.++.++|+.+-+.||...++.+.+ .- . + +.-.
T Consensus 399 G~L~~~~p~l~~~d~~li~~LF~s-------L~~~~~evr~sIqeALssl~~af~~~~~-----~----~------~~~~ 456 (501)
T PF13001_consen 399 GLLAKRAPSLFSKDLSLIEFLFDS-------LEDESPEVRVSIQEALSSLAPAFKDLPD-----D----E------DEQK 456 (501)
T ss_pred HHHHccCcccccccHHHHHHHHHH-------hhCcchHHHHHHHHHHHHHHHHHhcccc-----c----h------hHHH
Confidence 99998433321 22233333333 3899999999999999998887665 21 0 0 0011
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCc
Q 000655 1252 RDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1300 (1370)
Q Consensus 1252 ~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~ 1300 (1370)
......+. ..|..+.....|-+|+.|+....-..+
T Consensus 457 ~~~~~~l~--------------~~~~~~~~~~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 457 RLLLELLL--------------LSYIQSEVRSCRYAAVKYANACFPFSD 491 (501)
T ss_pred HHHHHHHH--------------HhhccchhHHHHHHHHHHHHHhCCccc
Confidence 11112222 224447778899999999886655443
No 164
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.32 E-value=14 Score=43.88 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=51.8
Q ss_pred HHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 000655 1272 STIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1341 (1370)
Q Consensus 1272 ~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1341 (1370)
-.+.|++++...+|..|++.||-.+++-|.-+..-+...-+-.-+.. |.+|.+-.||.+|--|++-+.+
T Consensus 128 ~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~-ls~~~~~~~r~kaL~AissLIR 196 (342)
T KOG2160|consen 128 PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI-LSSDDPNTVRTKALFAISSLIR 196 (342)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH-HccCCCchHHHHHHHHHHHHHh
Confidence 34569999999999999999999999998555322322222233333 6789999999999999888764
No 165
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=65.13 E-value=2.1e+02 Score=34.38 Aligned_cols=174 Identities=9% Similarity=0.165 Sum_probs=102.1
Q ss_pred cCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhh---hhHHHHhccCCChhHHHHHHHHHHhhchhh-------hh-
Q 000655 1160 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAM---LPRLILHIYDDDLSVRQACRNTLKQVAPFM-------EI- 1228 (1370)
Q Consensus 1160 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~---LvpLLlHL~D~~~~V~~ack~tL~~~a~lL-------~w- 1228 (1370)
..=.-+.|..+..+|+.+.+...+....+..+.+.+. ++..|+.--+ +|+++--|..-|+.|...= ..
T Consensus 86 ~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~-~~dial~~g~mlRec~k~e~l~~~iL~~~ 164 (335)
T PF08569_consen 86 PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE-NPDIALNCGDMLRECIKHESLAKIILYSE 164 (335)
T ss_dssp GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG-STTTHHHHHHHHHHHTTSHHHHHHHHTSG
T ss_pred hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc-CccccchHHHHHHHHHhhHHHHHHHhCcH
Confidence 3335679999999999999965544332455555544 3333443333 7789999999999998541 11
Q ss_pred hhhhhhccccCCcCCCCChHHHHH--HHHHHHHHhCcch--------HHHHHHHHHHhhcCCChhHHHHHHHHHhhhhcc
Q 000655 1229 GVYGIFNSHCFNSDHRSDYETFVR--DLTRQFVQHFPSR--------IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCL 1298 (1370)
Q Consensus 1229 ~l~~lf~~~~~~~~~~l~~~~f~~--~i~k~L~~~~~~~--------~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~ 1298 (1370)
....+|.- - +..+|+..-. .+.+-+...++.. +++|...-...+.|+.--.|+-|..++|-++-.
T Consensus 165 ~f~~ff~~---~--~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 165 CFWKFFKY---V--QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp GGGGHHHH---T--TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH---h--cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 11222221 1 1223321111 2234444444444 445555555678999999999999999977654
Q ss_pred Cchh--hhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1299 CDDQ--HILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1299 ~~~~--~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
-..- ....++...-....+. |++|+...||--|=--+..+.
T Consensus 240 r~n~~vm~~yi~~~~nLkl~M~-lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 240 RSNFNVMTRYISSPENLKLMMN-LLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp GGGHHHHHHHTT-HHHHHHHHH-HTT-S-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHCCHHHHHHHHH-HhcCcchhhhHHHHHHHHHHH
Confidence 4322 2345666666777777 899999999998876666554
No 166
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=64.99 E-value=1.1e+02 Score=37.50 Aligned_cols=208 Identities=15% Similarity=0.137 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHH
Q 000655 1123 SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL 1202 (1370)
Q Consensus 1123 ~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLl 1202 (1370)
.|++||-..|-.++-.-..+.+..+-+.+...+- =+.|-.+.-.+...+.|++-+.. .....+=-.-..+-..++
T Consensus 197 ~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lA--K~~e~~e~aR~~~~il~~mFKHS---eet~~~Lvaa~~lD~vl~ 271 (832)
T KOG3678|consen 197 SVRVEAARLLEQILVAENRDRVARIGLGVILNLA--KEREPVELARSVAGILEHMFKHS---EETCQRLVAAGGLDAVLY 271 (832)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhh--hhcCcHHHHHHHHHHHHHHhhhh---HHHHHHHHhhcccchhee
Confidence 3666666666666543332222222222211111 24556777778888888887632 111111112245667788
Q ss_pred hccCCChhHHHHHHHHHHhhchhhhh-hhhhhhcccc--------CCcCC------------------------------
Q 000655 1203 HIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHC--------FNSDH------------------------------ 1243 (1370)
Q Consensus 1203 HL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~~~~--------~~~~~------------------------------ 1243 (1370)
...-.+|++-.-|..||..|+-.=+- .-+.+.++++ +.-|+
T Consensus 272 ~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~Tla 351 (832)
T KOG3678|consen 272 WCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLA 351 (832)
T ss_pred ecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchh
Confidence 88888999999999999999844333 2122333221 00010
Q ss_pred -------CCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHh--hhhccCchhhhhhccHH-HHH
Q 000655 1244 -------RSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSS--SILCLCDDQHILSLFYT-QVF 1313 (1370)
Q Consensus 1244 -------~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG--~l~~~~~~~~~~~~~~e-~l~ 1313 (1370)
.++-+.|.+|--+ .-+++-...+.-.+..++|..-.-|.-++.+.- ..++... -...+-.| ..+
T Consensus 352 LVEPlva~~DP~~FARD~hd----~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q--~K~kVFseIGAI 425 (832)
T KOG3678|consen 352 LVEPLVASLDPGRFARDAHD----YAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQ--GKTKVFSEIGAI 425 (832)
T ss_pred hhhhhhhccCcchhhhhhhh----hhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhc--cchhHHHHHHHH
Confidence 0111222222222 123344455666778888877766665543322 1122111 10011111 145
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000655 1314 GLLVVKLSQSADAIVRATCSSSLGWLLKS 1342 (1370)
Q Consensus 1314 ~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1342 (1370)
.+|.+ +-..||..-..+|.+||-.+++-
T Consensus 426 QaLKe-vaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 426 QALKE-VASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHHH-HhcCchHHHHHHHHHHHHHhccc
Confidence 56666 67799999999999999999853
No 167
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.20 E-value=14 Score=46.83 Aligned_cols=107 Identities=22% Similarity=0.190 Sum_probs=74.8
Q ss_pred hHHHHHHHHhhhhcccccCcchHHHHHHHHhhhc-----CC-chhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch
Q 000655 1027 EVQTICLILTKSINRQQRFQREAAAAALSEFVRY-----SG-GFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1100 (1370)
Q Consensus 1027 ~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~-----~~-~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~ 1100 (1370)
.+.+=++++..+|++++...|.+|+-=....... |. .-..++..++ -+-..|++..||.....||-.|+..
T Consensus 217 i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~---d~~a~dt~s~VR~svf~gl~~~l~n 293 (1005)
T KOG1949|consen 217 IIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKIT---DELAFDTSSDVRCSVFKGLPMILDN 293 (1005)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH---HHhhhccchheehhHhcCcHHHHcC
Confidence 3445566777888888888888877433332221 11 1122233333 3346889999999999999988654
Q ss_pred -hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHh
Q 000655 1101 -HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTIL 1136 (1370)
Q Consensus 1101 -~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL 1136 (1370)
.-+...+++|+|+-..|.|..+.|++.+...|.+|=
T Consensus 294 p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 294 PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 334456889999999999999999999999998874
No 168
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=63.18 E-value=28 Score=37.26 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=61.3
Q ss_pred cchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000655 1263 PSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1342 (1370)
Q Consensus 1263 ~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1342 (1370)
...++.+......+++|+.+.-|..++.+++-++.+.+.+...+-+..+ ++.|...|.++..+.+...|-.+|..++..
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W-~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQW-LRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4566677778888999999999999999999999987655543334444 444555377777788899999999999865
Q ss_pred cc
Q 000655 1343 IN 1344 (1370)
Q Consensus 1343 ~~ 1344 (1370)
..
T Consensus 99 ~~ 100 (165)
T PF08167_consen 99 IR 100 (165)
T ss_pred hc
Confidence 43
No 169
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=62.23 E-value=17 Score=36.85 Aligned_cols=81 Identities=12% Similarity=-0.015 Sum_probs=53.6
Q ss_pred HhCcchHHHHHHHHHHhh-cCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 000655 1260 QHFPSRIDSYMGSTIQAF-EAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGW 1338 (1370)
Q Consensus 1260 ~~~~~~~~~~l~~~l~y~-kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~ 1338 (1370)
.++.+.=...+...+.++ +|..+..-+-|+.=||.+++++|. -+.-+..-.....++. |..+|||.||.-|-.|+..
T Consensus 35 ~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~-Lm~h~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 35 DKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVME-LMNHEDPEVRYEALLAVQK 112 (119)
T ss_dssp GGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHH-HTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHH-HhcCCCHHHHHHHHHHHHH
Confidence 344444555666667777 444566777788889999999973 2222322334555666 7889999999999999887
Q ss_pred HHHH
Q 000655 1339 LLKS 1342 (1370)
Q Consensus 1339 l~k~ 1342 (1370)
+.-.
T Consensus 113 lm~~ 116 (119)
T PF11698_consen 113 LMVN 116 (119)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 170
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=62.18 E-value=28 Score=37.81 Aligned_cols=84 Identities=10% Similarity=0.035 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhH
Q 000655 1250 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVR 1329 (1370)
Q Consensus 1250 f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR 1329 (1370)
....+|..+...++.....+ .....+.+|+..-+|++|..+....... ..+.+.++..+.. ++.|++..||
T Consensus 88 ~~D~~~~~~~~~~~~~~~~~-~~~~~w~~s~~~~~rR~~~~~~~~~~~~-------~~~~~~~l~~~~~-~~~d~~~~Vq 158 (197)
T cd06561 88 LVDSLCANLLGKLLYAEPEL-DLLEEWAKSENEWVRRAAIVLLLRLIKK-------ETDFDLLLEIIER-LLHDEEYFVQ 158 (197)
T ss_pred HHHHHHHHHHHHHHhcCcch-HHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHH-hCCCHHHHHH
Confidence 34455666655554443333 5667799999999999987655433332 1345778888888 8999999999
Q ss_pred HHHHHHHHHHHHH
Q 000655 1330 ATCSSSLGWLLKS 1342 (1370)
Q Consensus 1330 ~~Aa~aL~~l~k~ 1342 (1370)
...+-+|..+++.
T Consensus 159 kav~w~L~~~~~~ 171 (197)
T cd06561 159 KAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998876
No 171
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=61.43 E-value=34 Score=37.28 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=64.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhhccCCc----chhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCc--C
Q 000655 1069 EQMVEALCRHVSDESPTVRGLCLRGLVQIP----SIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK--D 1142 (1370)
Q Consensus 1069 ~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~----~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~--~ 1142 (1370)
+..+-.+.+++.....=.|-+|.+|.-.+. ..++-...++++..+-.+|...|.+|...++.+|..++...+. +
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 445667777888877778888888887763 3377778899999999999999999999999999999544321 3
Q ss_pred CcchhHHhHHhhhc
Q 000655 1143 AVEPILLNLSVRLR 1156 (1370)
Q Consensus 1143 ~~~~~l~~i~~~lr 1156 (1370)
.+.+++-+|...+.
T Consensus 117 aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 117 ALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555544443
No 172
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=61.39 E-value=23 Score=46.36 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=75.5
Q ss_pred ChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcC
Q 000655 1083 SPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQ 1159 (1370)
Q Consensus 1083 ~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpff 1159 (1370)
+...| .|+.-|.|++.. +.......+++.++..|+..+.++..-++..|.++--.-+.+. .-.-..+..+|..+|
T Consensus 263 eqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~-~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 263 EQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKD-EMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHcCCHHHHHHHh
Confidence 44444 445666777653 2222346677888888888888888888888888754322221 112234556667788
Q ss_pred cCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHh--hhhHHHHhccCCC
Q 000655 1160 VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHA--MLPRLILHIYDDD 1208 (1370)
Q Consensus 1160 ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~--~LvpLLlHL~D~~ 1208 (1370)
..++.+++..|..++..|+- ....+.++.+ .+++|+--|.|++
T Consensus 341 ~s~~~~l~~~aLrlL~NLSf------d~~~R~~mV~~GlIPkLv~LL~d~~ 385 (708)
T PF05804_consen 341 PSENEDLVNVALRLLFNLSF------DPELRSQMVSLGLIPKLVELLKDPN 385 (708)
T ss_pred cCCCHHHHHHHHHHHHHhCc------CHHHHHHHHHCCCcHHHHHHhCCCc
Confidence 99999999999999999986 2234556542 4555555555554
No 173
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.59 E-value=48 Score=38.79 Aligned_cols=96 Identities=16% Similarity=0.044 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhh-hHHH
Q 000655 1123 SVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAML-PRLI 1201 (1370)
Q Consensus 1123 ~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~L-vpLL 1201 (1370)
-|+-+|-.+|.........+.+ ...|.|+.-+.++.+|+.|...|-....-. ...+..+|...-+ -.+=
T Consensus 185 Fvreda~kAL~aMV~~vtp~~~-------L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl---~v~~~~~~~~~dl~~a~~ 254 (334)
T KOG2933|consen 185 FVREDAEKALVAMVNHVTPQKL-------LRKLIPILQHSNPRVRAKAALCFSRCVIRL---GVLPVLLQGSCDLSRAAQ 254 (334)
T ss_pred HHHHHHHHHHHHHHhccChHHH-------HHHHHHHHhhhchhhhhhhhccccccceec---cccchhhHhHHHHHHHHH
Confidence 3666666666666666554432 223345566677788877776665544311 1334445543222 2334
Q ss_pred HhccCCChhHHHHHHHHHHhhchhhhh
Q 000655 1202 LHIYDDDLSVRQACRNTLKQVAPFMEI 1228 (1370)
Q Consensus 1202 lHL~D~~~~V~~ack~tL~~~a~lL~w 1228 (1370)
-|+.|.=|.+++++++.+......++|
T Consensus 255 ~~~~d~Lp~~~~~a~~~~~~~~~v~~~ 281 (334)
T KOG2933|consen 255 EQGSDKLPELREAARFVRLELKEVLKT 281 (334)
T ss_pred hhhcccccccccchhHHHHhHHHHHHH
Confidence 678898899999999999888888777
No 174
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=53.90 E-value=62 Score=44.13 Aligned_cols=110 Identities=21% Similarity=0.157 Sum_probs=84.3
Q ss_pred HHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHH
Q 000655 1070 QMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1149 (1370)
Q Consensus 1070 ~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~ 1149 (1370)
+....+...+..+.+.||-.+.|.+|.+...--..-...+++.++..+++.+.-+.-++...+-.++..+...++.++..
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~ 895 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNP 895 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccce
Confidence 34567777889999999999999999886431222234567778888887776666666666666666666677777777
Q ss_pred hHHhhhcCcCcCCChHHHHHHHHHHHHhhc
Q 000655 1150 NLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1179 (1370)
Q Consensus 1150 ~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1179 (1370)
=++.-|.+...|..+.||.+|-..|..+..
T Consensus 896 Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 777778889999999999999999999987
No 175
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=53.18 E-value=2.3e+02 Score=34.53 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=26.9
Q ss_pred HHHHHHHHhccC-CChhhHHHHHHHHHHHHHHcccc
Q 000655 1312 VFGLLVVKLSQS-ADAIVRATCSSSLGWLLKSINSH 1346 (1370)
Q Consensus 1312 l~~~L~~~Ll~D-pdp~VR~~Aa~aL~~l~k~~~~~ 1346 (1370)
+..+|.. +-.+ +|+.++.+|+-=||.+.+-++..
T Consensus 335 L~~~L~~-li~~~~d~~l~~KAtlLL~elL~la~~l 369 (371)
T PF14664_consen 335 LLEALVE-LIESSEDSSLSRKATLLLGELLHLASRL 369 (371)
T ss_pred hHHHHHH-HHhcCCCchHHHHHHHHHHHHHHHHHhc
Confidence 5677777 4554 59999999999999998877654
No 176
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.33 E-value=4.3e+02 Score=31.66 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=87.0
Q ss_pred cCcC-CChHHHHHHHHHHHHhhccC-CCcchHH-HHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhh
Q 000655 1158 LQVS-MNVKMRRNAFAAFGALSNFG-VGSQREA-FLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGI 1233 (1370)
Q Consensus 1158 ffed-e~~~vR~aAi~LfG~L~~~~-~~~~~~~-~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~l 1233 (1370)
+.+| ....+|..+=....-|.+.. ..+-|.. .+.+....++.|++.-+| +|.|.++.-.++..++ |+. +=.+.
T Consensus 291 ~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~-~p~Vi~~~~a~i~~l~--LR~pdhsa~ 367 (461)
T KOG4199|consen 291 CIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSD-DPLVIQEVMAIISILC--LRSPDHSAK 367 (461)
T ss_pred HHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCC-ChHHHHHHHHHHHHHH--hcCcchHHH
Confidence 4555 44678855554444443321 2233333 445577888888887666 6777776644444333 222 11111
Q ss_pred hccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhh--hhccHHH
Q 000655 1234 FNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHI--LSLFYTQ 1311 (1370)
Q Consensus 1234 f~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~--~~~~~e~ 1311 (1370)
+ .+.| ..++.-.-|+.||-+ ..++++|++.|--++-....+.. ...+.|
T Consensus 368 ~----ie~G--------~a~~avqAmkahP~~----------------a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE- 418 (461)
T KOG4199|consen 368 A----IEAG--------AADLAVQAMKAHPVA----------------AQVQRNACNMIRNIVVRSAENRTILLANGIE- 418 (461)
T ss_pred H----Hhcc--------hHHHHHHHHHhCcHH----------------HHHHHHHHHHHHHHHHhhhhccchHHhccHH-
Confidence 1 0001 123333444445432 34889999999888776653221 222334
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHH-HHccccccccc
Q 000655 1312 VFGLLVVKLSQSADAIVRATCSSSLGWLL-KSINSHSWRST 1351 (1370)
Q Consensus 1312 l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~-k~~~~~~~~~~ 1351 (1370)
.|++ +-+-..+.++..|..||.-|+ ..-++-.|.+.
T Consensus 419 ---~Li~-~A~~~h~tce~~akaALRDLGc~v~lre~wtg~ 455 (461)
T KOG4199|consen 419 ---KLIR-TAKANHETCEAAAKAALRDLGCDVYLREEWTGA 455 (461)
T ss_pred ---HHHH-HHHhcCccHHHHHHHHHHhcCcchhhHHHhccc
Confidence 3444 456689999999999998887 33344456553
No 177
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=52.12 E-value=2.3e+02 Score=33.02 Aligned_cols=162 Identities=9% Similarity=0.084 Sum_probs=96.7
Q ss_pred cCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcc-----hHHHHHHHHhhhhHHHHhcc-----CC
Q 000655 1138 SSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ-----REAFLEQIHAMLPRLILHIY-----DD 1207 (1370)
Q Consensus 1138 ~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~-----~~~~~eQv~~~LvpLLlHL~-----D~ 1207 (1370)
.++...++....-+.--+-.+.||.+..+|.-+..++.++........ ...+-+.+..++.|.+.||- |+
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 555555665555555555678999999999999999999998554333 22234456788889898885 77
Q ss_pred ChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhh-cCCChhHHH
Q 000655 1208 DLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAF-EAPWPIIQA 1286 (1370)
Q Consensus 1208 ~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~-kS~~~~IR~ 1286 (1370)
...+-.++=-||..++....+ .. ...+...+++++++ .+.+ .+.+. +.+.+.++.
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~~-------~~--~~~r~~~l~~~l~e---~IL~------------~~~~~~~~~~~~l~~ 242 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQEN-------DD--SNPRSTWLDKILRE---GILS------------SMEHESSFSYPRLRT 242 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhcc-------CC--cccchHHHHHHHHH---HHhh------------hceeccccCchhHHH
Confidence 788888888888887664331 00 00111122222222 1111 11111 145677777
Q ss_pred HHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCCh
Q 000655 1287 NAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1326 (1370)
Q Consensus 1287 aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp 1326 (1370)
.....+..++..+.-.-. .....++..|-. ..+||+.
T Consensus 243 ~ll~~l~~~i~~lGi~~~--~hL~rii~~l~~-~l~npf~ 279 (282)
T PF10521_consen 243 VLLQQLPPIIDELGISSV--KHLQRIIPVLSQ-ILENPFG 279 (282)
T ss_pred HHHHHHHHHHHHhccHHH--HHHHHHHHHHHH-HhcCCCc
Confidence 777777766666653222 122556666666 5667753
No 178
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=51.27 E-value=17 Score=29.77 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHhccCCChhhHHHHHHH
Q 000655 1308 FYTQVFGLLVVKLSQSADAIVRATCSSS 1335 (1370)
Q Consensus 1308 ~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~a 1335 (1370)
+.+.+.+++.. -+.|++|.||..|-+.
T Consensus 15 ~~~~v~~~i~~-rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 15 DSSDVQSAIIR-RLSDSSPSVREAAVDL 41 (42)
T ss_pred chHHHHHHHHH-HhcCCChHHHHHHHHH
Confidence 45678888988 6999999999998775
No 179
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=50.72 E-value=8.7e+02 Score=35.81 Aligned_cols=323 Identities=12% Similarity=0.096 Sum_probs=156.9
Q ss_pred cChhHHHHHHHHHHHHHHHHHhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhhhcccCC
Q 000655 451 RHHTAKQAVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEP 530 (1370)
Q Consensus 451 kd~~lK~s~l~sv~~i~~av~~~~~~~~~f~f~~k~eLl~~l~~li~~ep~~~l~s~~~~l~~vr~~am~ait~L~~L~P 530 (1370)
++..+-.-.+.++.+++.-.-...+ -..|.|. .++++=+..+|+.... .. +|.+++.++..++.-
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eE-L~~f~FQ--kefLkPfe~im~~s~~----~e------VrE~ILeCv~qmI~s-- 1213 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREE-LANYNFQ--NEFMKPFVIVMRKSNA----VE------IRELIIRCVSQMVLS-- 1213 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhh-hhchhHH--HHHHHHHHHHHHhcCc----hH------HHHHHHHHHHHHHHH--
Confidence 3445555556666677766554332 2345554 4888988888875431 12 899999999988742
Q ss_pred CCChhHHHHHHH----HhhhccccCCC--CcccHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhcChhHH
Q 000655 531 KLTIETRNHVMK----ATLGFFALPND--PIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEY 604 (1370)
Q Consensus 531 ~l~~e~~~~ll~----~c~~v~~lp~~--~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~iL~~l~pwl~S~~~h 604 (1370)
+..=++ +.|++|+.+.. ...+++..++.+..+....+..=+. ...+.+..++.=+..+.+...+
T Consensus 1214 ------~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~---~~~~~F~DlV~cL~~Fa~q~~~- 1283 (1780)
T PLN03076 1214 ------RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITE---TETTTFTDCVNCLIAFTNSRFN- 1283 (1780)
T ss_pred ------HHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccc---cchhHHHHHHHHHHHHHhCcCc-
Confidence 222222 33456655532 2246666667666554443321110 0146778888888888765544
Q ss_pred HhhHHHHHHHHHHH---HHHhhhhcccccCCCCCCccchh-hh--hhhhhccCCCCCCcccCCchh-hhhhhhHHHHhhc
Q 000655 605 QRRRSCLAVYEMLL---KFRTLCVIGYCALGCHGSCTHIK-QI--DRAVLGNFSNLPSAYVLPSRE-ALCLGNRVIMYLP 677 (1370)
Q Consensus 605 eR~RA~~~~~~lL~---~~~~~~~~~~c~~~~~~~~~~~~-~~--~~~~~~~~~~~ps~f~~~~~~-f~~lG~Lvg~l~p 677 (1370)
...++.++..++. ++.+..+ ++.....+.. .. ..+-.....+.+ .+ .+..+ ...-=.++..|.=
T Consensus 1284 -~nISL~AI~lL~~~~~~La~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~-~~~~~~~~lW~pLL~~Ls~ 1354 (1780)
T PLN03076 1284 -KDISLNAIAFLRFCATKLAEGDL------GSSSRNKDKEAPPSSPQSGKDGKQESG-EF-TDKDDHLYFWFPLLAGLSE 1354 (1780)
T ss_pred -ccccHHHHHHHHHHHHHHHhccc------ccccccccccccccccccccccccccc-cc-ccchhHHHHHHHHHHHHHH
Confidence 5567766665552 2222100 0000000000 00 000000000000 00 00000 0111234444555
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCC-cchh---hhhhhhhhcHHHHHHhcc----------CCC-CChh
Q 000655 678 RCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSG-IDLE---LSYGALSSLEDVIAILRS----------DAS-IDPS 742 (1370)
Q Consensus 678 rC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~-~~~~---~~~~~l~~l~d~~~~l~~----------~~~-~~~~ 742 (1370)
.|.|+.++||..|++.+.-+| ..+. ..++.+ ++.- ....-+..++..++.... +.+ .+..
T Consensus 1355 l~~D~RlEVR~~ALqtLF~iL---~~yG--~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~ 1429 (1780)
T PLN03076 1355 LSFDPRPEIRKSALQVLFDTL---RNHG--HLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQD 1429 (1780)
T ss_pred HhcCCcHHHHHHHHHHHHHHH---HHhh--ccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhh
Confidence 688999999999877655444 2211 112211 1100 001001111100000000 000 0000
Q ss_pred ----HH----HHHHHHHHHccCC--hhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHH
Q 000655 743 ----EV----FNRIVSSVCILLT--KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLS 812 (1370)
Q Consensus 743 ----~~----~~~i~~~i~~~L~--~~el~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~ 812 (1370)
+- +..++..|.+++. ...|.+|+.-+...++..+..-+.-++.-|..++..-|.++.+++-..|++.+..
T Consensus 1430 ~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~ 1509 (1780)
T PLN03076 1430 AWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKE 1509 (1780)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 11 1234444555553 3356667776777778888888888888999999999999987756555555544
No 180
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.05 E-value=67 Score=38.89 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=92.4
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhH
Q 000655 1072 VEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1148 (1370)
Q Consensus 1072 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l 1148 (1370)
+.-|...+++.|..||.=+++|+-.+... ...-+.-.++.......-|.+..|+-.+...+-.++........+++.
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 44677788999999999999999866432 334344677888888888888999999999999988888777789999
Q ss_pred HhHHhhhcCcCcCCChHHHHHHHHHHHHhhccC
Q 000655 1149 LNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFG 1181 (1370)
Q Consensus 1149 ~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~ 1181 (1370)
.-+...++.-+.+--+++|..|+--|--|+.++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 889999999999999999999999998888754
No 181
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=49.10 E-value=13 Score=27.30 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=20.0
Q ss_pred HHHHHhhhccCCcchhhhhhHHHHHHHHHhhccc
Q 000655 1086 VRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD 1119 (1370)
Q Consensus 1086 VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d 1119 (1370)
||.-+.++||+++. +..++.+++.|+|
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHhcC
Confidence 79999999999987 5566777666643
No 182
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=49.07 E-value=4.1e+02 Score=38.98 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=80.2
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh---h----hhHHHHHHHHHhhcccC-ChhHHHHHHHHHHHHhccCC
Q 000655 1069 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI---H----QYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSS 1140 (1370)
Q Consensus 1069 ~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v---~----~~~~~lL~all~~L~d~-d~~V~leAm~~L~~lL~~l~ 1140 (1370)
+.++.+|.....|+++.+-.+|.+.+..|..+.. . .-...++.|+.+.-... +.++-+.|+..|..+...+-
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 5567777777788888777777776665433211 1 12234444444333222 35688888888886633321
Q ss_pred cC-----------------------------------CcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcc
Q 000655 1141 KD-----------------------------------AVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ 1185 (1370)
Q Consensus 1141 ~~-----------------------------------~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~ 1185 (1370)
+. +...+-.-+...+...-.|+|.+||..|+..|=++...-++..
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 10 0112334444455445568999999999976555554333445
Q ss_pred hHHHHHHHHh-hhhHHHHhcc
Q 000655 1186 REAFLEQIHA-MLPRLILHIY 1205 (1370)
Q Consensus 1186 ~~~~~eQv~~-~LvpLLlHL~ 1205 (1370)
...+=+.+++ .|.|++-+++
T Consensus 1383 s~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1383 SLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 5556677665 6788876654
No 183
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=47.21 E-value=3.3e+02 Score=34.64 Aligned_cols=146 Identities=19% Similarity=0.138 Sum_probs=94.1
Q ss_pred hhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh--hhhhhhccccCC-----cCCCCChHHH-HHHHHHHHHHh-----
Q 000655 1195 AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFN-----SDHRSDYETF-VRDLTRQFVQH----- 1261 (1370)
Q Consensus 1195 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w--~l~~lf~~~~~~-----~~~~l~~~~f-~~~i~k~L~~~----- 1261 (1370)
..++|++.=-.|++.+|+..+-..|+++..-++- -+..+|.-+ .+ +++....... -..|..+|.++
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly-~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~ 315 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLY-LGKGIPPENGRPPASPRLQEKILSLLSKSVIAAT 315 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHh
Confidence 4678888888999999999999999999988666 335555543 21 1111112112 12334444332
Q ss_pred CcchHHHHHHHHHHhhcCC--ChhHHHHHHHHH---hhhhccCchhhhhhccHHHHHHHHHHHhcc--------CCChhh
Q 000655 1262 FPSRIDSYMGSTIQAFEAP--WPIIQANAIYFS---SSILCLCDDQHILSLFYTQVFGLLVVKLSQ--------SADAIV 1328 (1370)
Q Consensus 1262 ~~~~~~~~l~~~l~y~kS~--~~~IR~aA~~fi---G~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~--------Dpdp~V 1328 (1370)
.+..+...+.. =+.|+ ...+|..|..|+ +....+.+.+....+. +.+.+.+.. +.+ -.+...
T Consensus 316 ~~~~~~~i~~~---~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~-~~i~~~g~p-~~~~~~~~~~~~~~~~l 390 (501)
T PF13001_consen 316 SFPNILQIVFD---GLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLR-PVILSQGWP-LIQDSSSQSNSSEDIEL 390 (501)
T ss_pred CCccHHHHHhc---cccCCccccccchhcchhhhcchHHhhhcCHHHHHHHH-HHHHhcCcc-ccccccccCCCcccHHH
Confidence 32332222222 33444 778999999999 8888888877765443 455555555 342 257889
Q ss_pred HHHHHHHHHHHHHHcccc
Q 000655 1329 RATCSSSLGWLLKSINSH 1346 (1370)
Q Consensus 1329 R~~Aa~aL~~l~k~~~~~ 1346 (1370)
|..|=+|||.|.|.....
T Consensus 391 R~~aYe~lG~L~~~~p~l 408 (501)
T PF13001_consen 391 RSLAYETLGLLAKRAPSL 408 (501)
T ss_pred HHHHHHHHHHHHccCccc
Confidence 999999999999766544
No 184
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=46.70 E-value=2.2e+02 Score=31.24 Aligned_cols=83 Identities=8% Similarity=0.035 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHH
Q 000655 1251 VRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRA 1330 (1370)
Q Consensus 1251 ~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~ 1330 (1370)
...+|..++.........+......+.+|+.+-.|++|....-..... -+.+.++..+.. +.+|++..||.
T Consensus 103 ~D~~~~~~~~~~~~~~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--------~~~~~~l~~~~~-~~~d~~~~vq~ 173 (213)
T PF08713_consen 103 CDSLCSKLLGPLLKKHPEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--------EDFDELLEIIEA-LLKDEEYYVQK 173 (213)
T ss_dssp HHHHTHHHHHHHHHHHGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--------CHHHHHHHHHHH-CTTGS-HHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--------cCHHHHHHHHHH-HcCCchHHHHH
Confidence 344444444443222245666667799999999999886432211111 345778888888 89999999999
Q ss_pred HHHHHHHHHHHH
Q 000655 1331 TCSSSLGWLLKS 1342 (1370)
Q Consensus 1331 ~Aa~aL~~l~k~ 1342 (1370)
..+-+|..+++.
T Consensus 174 ai~w~L~~~~~~ 185 (213)
T PF08713_consen 174 AIGWALREIGKK 185 (213)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHHHh
Confidence 999998887754
No 185
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=46.47 E-value=63 Score=41.32 Aligned_cols=105 Identities=20% Similarity=0.156 Sum_probs=73.9
Q ss_pred HHHHHhhcCCCChhHHHHHhhhccCCcch-----hhhhhHHH----HHHHHHhhcccCChhHHHHHHHHHHHHhccCCcC
Q 000655 1072 VEALCRHVSDESPTVRGLCLRGLVQIPSI-----HIHQYATQ----VLSVILALLDDLDESVQLTAVSCLLTILKSSSKD 1142 (1370)
Q Consensus 1072 i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-----~v~~~~~~----lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~ 1142 (1370)
++.+.+-+..++-+.|.-.+...||+..+ ++..+.++ +++.+.+-|.|...-++..|++++.+|.+.-...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 44556667888999999999999999754 23333344 4555556666667779999999999999875433
Q ss_pred Cc-chhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhc
Q 000655 1143 AV-EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSN 1179 (1370)
Q Consensus 1143 ~~-~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~ 1179 (1370)
.- +.-+..++. |. ..|-+..||..||.+|..|.-
T Consensus 381 ~~~r~ev~~lv~--r~-lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 381 VGRRHEVIRLVG--RR-LQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cchHHHHHHHHH--HH-hhhhhHHHHHHHHHHHHHHHh
Confidence 21 122333332 33 456789999999999999985
No 186
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=46.44 E-value=23 Score=29.04 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhh
Q 000655 1069 EQMVEALCRHVSDESPTVRGLCLRG 1093 (1370)
Q Consensus 1069 ~~~i~~L~~~l~D~~~~VR~lsLrG 1093 (1370)
..+...+.+++.|++|.||..++.-
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3578899999999999999999863
No 187
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=44.16 E-value=30 Score=27.66 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=25.8
Q ss_pred hhhhHHHHhccCCChhHHHHHHHHHHhhc
Q 000655 1195 AMLPRLILHIYDDDLSVRQACRNTLKQVA 1223 (1370)
Q Consensus 1195 ~~LvpLLlHL~D~~~~V~~ack~tL~~~a 1223 (1370)
+.+++|+-.|.+++++|++.|-.||+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 56888888899999999999999998875
No 188
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.90 E-value=9.3e+02 Score=32.05 Aligned_cols=147 Identities=12% Similarity=0.161 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHhHhhhc----CchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCC
Q 000655 1006 KEKWINLIGDVAGCVSIK----RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSD 1081 (1370)
Q Consensus 1006 ~e~~~~gV~lLAr~m~~~----~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D 1081 (1370)
.-.+.+-.+.+-.+.+=+ ++.....++.-++-+++-++...+..|+..|-. +.+.++.
T Consensus 14 ~f~~l~k~~vlqe~r~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~------------------~tKlfQs 75 (865)
T KOG1078|consen 14 VFQHLEKTTVLQEARTFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFA------------------ITKLFQS 75 (865)
T ss_pred cccChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH------------------HHHHHhh
Confidence 334444444444443333 233455666666666776666666666543332 3334455
Q ss_pred CChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcC
Q 000655 1082 ESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS 1161 (1370)
Q Consensus 1082 ~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffed 1161 (1370)
-++..|+++=-|++.++.- ..-+-.+...++.-....++.+..-|+++|-.|++.-.-. .+-.-+..+|-|
T Consensus 76 kd~~LRr~vYl~Ikels~i--sedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~-------~iery~kqaivd 146 (865)
T KOG1078|consen 76 KDVSLRRMVYLAIKELSKI--SEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQ-------AIERYMKQAIVD 146 (865)
T ss_pred cCHHHHHHHHHHHhhcccc--chhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhH-------HHHHHHHhHeec
Confidence 5677788877777777642 1122345566666665566789999999999998753333 333344678999
Q ss_pred CChHHHHHHHHHHHHhhc
Q 000655 1162 MNVKMRRNAFAAFGALSN 1179 (1370)
Q Consensus 1162 e~~~vR~aAi~LfG~L~~ 1179 (1370)
-++.++.+|.--==+|..
T Consensus 147 ~~~avSsaalvss~hll~ 164 (865)
T KOG1078|consen 147 KNPAVSSAALVSSYHLLP 164 (865)
T ss_pred cccccchHHHHHHhhhhc
Confidence 999999988755444443
No 189
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=43.33 E-value=72 Score=42.25 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHhhc-CCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhcc--C
Q 000655 1066 SLLEQMVEALCRHV-SDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS--S 1139 (1370)
Q Consensus 1066 ~l~~~~i~~L~~~l-~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~--l 1139 (1370)
.+.+..+-.|.+-+ .+.+..+|-=.+=++|.+-.+ .+.+|. |-+-..|.|.+.-|+-.++.-|+++|+. .
T Consensus 964 ~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Yi----P~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~v 1039 (1529)
T KOG0413|consen 964 RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYI----PMIAASLCDPSVIVRRQTIILLARLLQFGIV 1039 (1529)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhh----HHHHHHhcCchHHHHHHHHHHHHHHHhhhhh
Confidence 34444555555555 345566665555566666554 566674 4467788999999999999999999975 2
Q ss_pred CcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCCh
Q 000655 1140 SKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDL 1209 (1370)
Q Consensus 1140 ~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~ 1209 (1370)
.|. +.+++.. ---.-|++++||.-|=.+||++.... .+.- + .+++|--++||+|-..
T Consensus 1040 Kw~--G~Lf~Rf----~l~l~D~~edIr~~a~f~~~~vL~~~-~P~~-f-----~~~FVe~i~~ln~~~~ 1096 (1529)
T KOG0413|consen 1040 KWN--GELFIRF----MLALLDANEDIRNDAKFYISEVLQSE-EPNF-F-----PLNFVEYIIALNQARR 1096 (1529)
T ss_pred hcc--hhhHHHH----HHHHcccCHHHHHHHHHHHHHHHhhc-Cccc-h-----HHHHHHHHHHHHHHHH
Confidence 232 2333332 22346899999999999999999832 1111 1 2456666777766443
No 190
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=42.66 E-value=6.5e+02 Score=29.94 Aligned_cols=266 Identities=17% Similarity=0.192 Sum_probs=134.5
Q ss_pred hHHHHHHHHh---hhhcccccCcchHH---HHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch
Q 000655 1027 EVQTICLILT---KSINRQQRFQREAA---AAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI 1100 (1370)
Q Consensus 1027 ~~~~i~~~L~---~~L~s~~~~~Ri~a---~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~ 1100 (1370)
.+|.++..|. +...-.++.+|-.. +..+-.|++.. ....+..+.+-.|..++..++..|+.++++-+|-+...
T Consensus 34 eLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkak-egahlapnlmpdLQrGLiaddasVKiLackqigcilEd 112 (524)
T KOG4413|consen 34 ELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAK-EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILED 112 (524)
T ss_pred hhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhc-cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhc
Confidence 4566665542 12222455666653 33444455432 22355567788999999999999999999999987643
Q ss_pred ----hhhhh----HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhH---HhhhcCcCcCCChHHHHH
Q 000655 1101 ----HIHQY----ATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNL---SVRLRNLQVSMNVKMRRN 1169 (1370)
Q Consensus 1101 ----~v~~~----~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i---~~~lrpffede~~~vR~a 1169 (1370)
.|..- -..+++-++..+...|++|.-.|+..+++|-.. +.+.+.++.+= -.++|.+--+-++-+|.-
T Consensus 113 cDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcndiaRvR 190 (524)
T KOG4413|consen 113 CDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCNDIARVR 190 (524)
T ss_pred CchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhhhHHHHH
Confidence 11110 123456667777777899999999999998643 22233222110 001111112223333333
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHhhhhHHHH-hccC-CChhHHHHHHHHHHhhc------hhhhh-hhhhhhccccCC
Q 000655 1170 AFAAFGALSNFGVGSQREAFLEQIHAMLPRLIL-HIYD-DDLSVRQACRNTLKQVA------PFMEI-GVYGIFNSHCFN 1240 (1370)
Q Consensus 1170 Ai~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLl-HL~D-~~~~V~~ack~tL~~~a------~lL~w-~l~~lf~~~~~~ 1240 (1370)
-..|.=.+.... .+...+--...|+.+|. -|+- ++.-|+-.|-.-....+ .|+-- .+-+++++--.+
T Consensus 191 VleLIieifSiS----pesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsG 266 (524)
T KOG4413|consen 191 VLELIIEIFSIS----PESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISG 266 (524)
T ss_pred HHHHHHHHHhcC----HHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhC
Confidence 333333332211 11111222234444433 2333 34455554533333222 11211 222222222111
Q ss_pred cCCCCChHHH--HHHHHHHHHH---------hCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCc
Q 000655 1241 SDHRSDYETF--VRDLTRQFVQ---------HFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1300 (1370)
Q Consensus 1241 ~~~~l~~~~f--~~~i~k~L~~---------~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~ 1300 (1370)
. ..=.|+.| +--+.|.+.+ .--+.+-+++...+.-..+..++...+|+--+|.++.+..
T Consensus 267 a-dsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 267 A-DSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred C-CCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc
Confidence 1 11123333 1111111111 1113445677788888899999999999999999988776
No 191
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.26 E-value=1e+03 Score=31.77 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCcccH
Q 000655 803 VSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLS 882 (1370)
Q Consensus 803 V~~I~~~I~~~L~~i~~~~~r~~~l~ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d~~l~ 882 (1370)
++|.++.++.+..+.+-..-|+.+.+++-.+++.+..+|.-.-| =|+-..-+.=..|+...
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gm-------------------k~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGM-------------------KPLIQVLQRDYMDPEII 80 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHccc-------------------HHHHHHHhhccCCHHHH
Confidence 88889999999999999999999999999999999887652211 12222333335688888
Q ss_pred HHHHHHHHHHHccCC
Q 000655 883 FLFLEHLISALNQTP 897 (1370)
Q Consensus 883 ~~vL~~LL~~L~~~p 897 (1370)
.-+|+.++-.....-
T Consensus 81 k~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 81 KYALDTLLILTSHDD 95 (970)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999998887763
No 192
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=40.92 E-value=1.3e+02 Score=32.00 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHhhhccCCc
Q 000655 1066 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIP 1098 (1370)
Q Consensus 1066 ~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~ 1098 (1370)
.+++.+++.|... .++.+|.-++|-||.++
T Consensus 10 ~LL~~L~~iLk~e---~s~~iR~E~lr~lGilG 39 (160)
T PF11865_consen 10 ELLDILLNILKTE---QSQSIRREALRVLGILG 39 (160)
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHhhhcc
Confidence 4445555555444 46999999999999886
No 193
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=40.01 E-value=1.6e+02 Score=34.35 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=79.9
Q ss_pred CCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCC--------cchhHHhHHhhhcCcC-----cCC
Q 000655 1096 QIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDA--------VEPILLNLSVRLRNLQ-----VSM 1162 (1370)
Q Consensus 1096 nl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~--------~~~~l~~i~~~lrpff-----ede 1162 (1370)
++....+.++-+-++|+++..+||.+..+...++..|..++....... +..++-+......-|. +++
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 444446778889999999999999999999999999999999766443 3333333322222111 255
Q ss_pred ChHHHHHHHHHHHHhhcc---CCCcchHHHH-HHHHhhhhHHHHhccC-CChhHHHHHHHHHHhhchhhh
Q 000655 1163 NVKMRRNAFAAFGALSNF---GVGSQREAFL-EQIHAMLPRLILHIYD-DDLSVRQACRNTLKQVAPFME 1227 (1370)
Q Consensus 1163 ~~~vR~aAi~LfG~L~~~---~~~~~~~~~~-eQv~~~LvpLLlHL~D-~~~~V~~ack~tL~~~a~lL~ 1227 (1370)
...+=..|+...-.|.+. .++..+.... +-+..++..-+.|-.+ +++.++..--..+..+..-||
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG 256 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence 666666777777777552 1222233333 3344446666666665 455666555444444444333
No 194
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.61 E-value=5.1e+02 Score=30.75 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcch
Q 000655 1107 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR 1186 (1370)
Q Consensus 1107 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~ 1186 (1370)
...|...+..|++.|=.+-.+++..++++...-. +.+.+.+..+++.+-.-..+-|..|-.+|+...|++... .
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~-----l 160 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSS-----L 160 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-----H
Confidence 3445555677776666677788888887765533 567778888888887778888999999999999998862 2
Q ss_pred HHHHHHHHhhhhHHHHhccCC-ChhHHHHHHHHHHhhc
Q 000655 1187 EAFLEQIHAMLPRLILHIYDD-DLSVRQACRNTLKQVA 1223 (1370)
Q Consensus 1187 ~~~~eQv~~~LvpLLlHL~D~-~~~V~~ack~tL~~~a 1223 (1370)
..-..|-...++..|+|=.+. +.-|+..+-.||....
T Consensus 161 n~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV 198 (334)
T KOG2933|consen 161 NNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMV 198 (334)
T ss_pred HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 222334566777777777665 5678888887777644
No 195
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=39.39 E-value=5.1e+02 Score=29.48 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.0
Q ss_pred cCCCChhHHHHHhhhccCCc
Q 000655 1079 VSDESPTVRGLCLRGLVQIP 1098 (1370)
Q Consensus 1079 l~D~~~~VR~lsLrGLgnl~ 1098 (1370)
++|+++.|-+-++++.+++-
T Consensus 2 l~d~d~~v~K~~I~~~~~iy 21 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIY 21 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 57899999999999887764
No 196
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=39.05 E-value=1.4e+02 Score=38.71 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCC
Q 000655 1103 HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1182 (1370)
Q Consensus 1103 ~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1182 (1370)
......+|+-++.+++|.+-.+.-+++.++..+.+.+|...+...++--...+ +|-..+..||..+.-.||.+++..+
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l--~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL--AFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc--hhcccchHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999888999999999999999998766664443333334 7888899999999999999996432
Q ss_pred CcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhh
Q 000655 1183 GSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV 1222 (1370)
Q Consensus 1183 ~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~ 1222 (1370)
+. +|..-+.|++.-.+=.+|.+...|-......
T Consensus 462 ---~~----~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 462 ---KA----AVLDELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred ---HH----HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 22 3555677888888888999998886555443
No 197
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.97 E-value=9.3e+02 Score=30.67 Aligned_cols=228 Identities=16% Similarity=0.123 Sum_probs=113.3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhcccCChh--HHHHHHHHHHHHhccCCcCCcc
Q 000655 1069 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDES--VQLTAVSCLLTILKSSSKDAVE 1145 (1370)
Q Consensus 1069 ~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~--V~leAm~~L~~lL~~l~~~~~~ 1145 (1370)
+.++..|.+.+..++...|..++-|||-.-.+ +. ..+++-+..-+.+.|.+ ++.-|-.+|+.+.--.-..++.
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~----eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~t 524 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA----EEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLT 524 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH----HHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHH
Confidence 34566777777888888889999999977554 22 33444444445556664 4444555566665544445544
Q ss_pred hhHHh-HHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHH------------------------hhhhHH
Q 000655 1146 PILLN-LSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH------------------------AMLPRL 1200 (1370)
Q Consensus 1146 ~~l~~-i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~------------------------~~LvpL 1200 (1370)
+..++ ... |--.+.+..-+|-.|..| |.| -++++...+...+-+. -.++-=
T Consensus 525 s~ilqtf~E--r~~~e~~tqw~RFlaLgL-a~L-f~g~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGdvl~Iq~ 600 (881)
T COG5110 525 SLILQTFVE--RGKIESETQWFRFLALGL-ASL-FYGRKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQS 600 (881)
T ss_pred HHHHHHHHH--hhhhhhhhHHHHHHHHHH-HHH-HccccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCcHHHHHH
Confidence 43333 111 111123334455555433 111 1233333333333211 134455
Q ss_pred HHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCC
Q 000655 1201 ILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP 1280 (1370)
Q Consensus 1201 LlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~ 1280 (1370)
+||.+|+.+.=--+-..|+-..-.+|++.+-+ ++++ ...+.. .......+.| -
T Consensus 601 lLhv~~e~~~D~~k~~ea~ie~~a~Lg~Alia------mGed--ig~eMv----------------lRhf~h~mhy---g 653 (881)
T COG5110 601 LLHVKDEFTGDTLKNEEALIESLALLGCALIA------MGED--IGSEMV----------------LRHFSHSMHY---G 653 (881)
T ss_pred HHhccCCCCcccchhhHHHHHHHHHhhhHHhh------hcch--hhHHHH----------------HHHhhhHhhc---C
Confidence 77877764432212222333333334442221 2221 111111 1122222222 2
Q ss_pred ChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1281 WPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1281 ~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
.++||+.-.+-.|.+.- +++|. -++..|.+ -.+|-|-.|-..+--|+|+++
T Consensus 654 ~~hiR~~~PLa~gils~-SnPQm-------~vfDtL~r-~shd~dl~v~~ntIfamGLiG 704 (881)
T COG5110 654 SSHIRSVLPLAYGILSP-SNPQM-------NVFDTLER-SSHDGDLNVIINTIFAMGLIG 704 (881)
T ss_pred cHHHHHHHHHHHhcccC-CCcch-------HHHHHHHH-hccccchhHHHHHHHHhhccc
Confidence 45688877776675432 22222 35777777 688888888888888887776
No 198
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=38.31 E-value=2.5e+02 Score=36.36 Aligned_cols=120 Identities=21% Similarity=0.315 Sum_probs=82.5
Q ss_pred hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCc-Cc----------CCChHHHHH
Q 000655 1101 HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNL-QV----------SMNVKMRRN 1169 (1370)
Q Consensus 1101 ~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpf-fe----------de~~~vR~a 1169 (1370)
..+.|.+.+++-+.+.+.+.+..++.++..+++++...++|..-.+++- ++.-.-+. |- +.|+-+-..
T Consensus 239 ~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdii~tnel~w~~ 317 (993)
T COG5234 239 ESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDIIITNELVWHG 317 (993)
T ss_pred chhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccceeecchHHHHH
Confidence 4667778888888888888888999999999999999999888777654 55443333 11 244556667
Q ss_pred HHHHHHHhhccCCCc-------------------------------------------chHHHHHHHHhhhhHHHHh--c
Q 000655 1170 AFAAFGALSNFGVGS-------------------------------------------QREAFLEQIHAMLPRLILH--I 1204 (1370)
Q Consensus 1170 Ai~LfG~L~~~~~~~-------------------------------------------~~~~~~eQv~~~LvpLLlH--L 1204 (1370)
+|.-|| |++.+.-+ ....+-+++..+|.-|++. +
T Consensus 318 ~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~al 396 (993)
T COG5234 318 AILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTAL 396 (993)
T ss_pred HHHHHH-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhh
Confidence 777776 44311100 1233445555556666665 6
Q ss_pred cCCChhHHHHHHHHHHhh
Q 000655 1205 YDDDLSVRQACRNTLKQV 1222 (1370)
Q Consensus 1205 ~D~~~~V~~ack~tL~~~ 1222 (1370)
-||+-.||.++..||...
T Consensus 397 FDpel~vRr~a~Aal~E~ 414 (993)
T COG5234 397 FDPELNVRRAATAALFEV 414 (993)
T ss_pred cCchhhhhhHHHHHHHHH
Confidence 799999999988888764
No 199
>PRK14707 hypothetical protein; Provisional
Probab=37.80 E-value=1.7e+03 Score=33.39 Aligned_cols=384 Identities=14% Similarity=0.009 Sum_probs=199.4
Q ss_pred HHHHhhcCccc----HHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHH-HHHhcCCcchHHHHH
Q 000655 871 AFHAFSQHAVL----SFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALT-AFFRGGGKVGKKAVE 945 (1370)
Q Consensus 871 ~W~ala~d~~l----~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~-Ell~~~~~~~~~av~ 945 (1370)
+...+..++.+ ..+=+.+.|.-|.+.|-.+ . --.|+.+|- ++...+ ..+.
T Consensus 734 LA~rL~~~p~l~~a~~aQevANaLNALSKWPd~~-----------------~---C~~AA~aLA~rLa~~~--~Lr~--- 788 (2710)
T PRK14707 734 LAARVVAEPRLRKAFDAQQVATALNALSKWPDNQ-----------------A---CAAAANTLAERQLREP--DVRD--- 788 (2710)
T ss_pred HHHHHhcChhhhhhcCHHHHHHHHHHhhcCCCch-----------------H---HHHHHHHHHHHHhhCc--chhh---
Confidence 45555555543 3455566666666666211 1 123333443 344444 3443
Q ss_pred HhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHH-------HhhcchHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 000655 946 KSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFC-------ECVGDLEMRKILARDGEQNDKEKWINLIGDVAG 1018 (1370)
Q Consensus 946 ~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll-------~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr 1018 (1370)
.+=||-+...|.-+|-+-+ -.+|+.+..+|=.-+ ....-+++.+.|.--..|-+.......+..||.
T Consensus 789 aL~pQ~vAn~LNALSKWPe------~~~Cr~AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~ 862 (2710)
T PRK14707 789 VLKPREMTNALNALSKWPD------TPACAAAASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAE 862 (2710)
T ss_pred hcCHHHHHHHHHHhhcCCC------chHHHHHHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3447766666665544332 235777666654333 334556677777777789988888899998998
Q ss_pred Hhhhc-------CchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhH----HHHHHHHHHhhcCCCChhHH
Q 000655 1019 CVSIK-------RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSL----LEQMVEALCRHVSDESPTVR 1087 (1370)
Q Consensus 1019 ~m~~~-------~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l----~~~~i~~L~~~l~D~~~~VR 1087 (1370)
.+... .++++...++-|.+-- ..+..|.+|.+.-+++.+.+...+.+ +-+++|.|.+|=..+ .=|
T Consensus 863 RLa~e~~LR~aL~~QevantLNALSKWP--d~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd~~--~Cr 938 (2710)
T PRK14707 863 RLADEPELRHTLTAHGVVIVLNALSKWP--NVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIP--VCA 938 (2710)
T ss_pred HHhcChhhhhccchHHHHHHHhhhccCC--CcHHHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCCch--HHH
Confidence 77542 3456777777777662 23445667777777777665432222 234677777776543 233
Q ss_pred HHHhhhccCCcch--hhhhhHHHHHHHHHhhccc-CChhHHHHHHHHHHHH-------hccCCcCCcchhHHhHHhhhcC
Q 000655 1088 GLCLRGLVQIPSI--HIHQYATQVLSVILALLDD-LDESVQLTAVSCLLTI-------LKSSSKDAVEPILLNLSVRLRN 1157 (1370)
Q Consensus 1088 ~lsLrGLgnl~~~--~v~~~~~~lL~all~~L~d-~d~~V~leAm~~L~~l-------L~~l~~~~~~~~l~~i~~~lrp 1157 (1370)
..+..=-+.++.. ..+.+-++-+...+++|.. .|+..-..|...|..- .+.++.++++..+-.++. .|
T Consensus 939 ~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSK--WP 1016 (2710)
T PRK14707 939 TAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSK--WL 1016 (2710)
T ss_pred HHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhc--CC
Confidence 3332222233322 2334456667777777776 3444444444444332 245555555554433322 22
Q ss_pred cCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHH-hhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh--hhhhhh
Q 000655 1158 LQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH-AMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIF 1234 (1370)
Q Consensus 1158 ffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~-~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w--~l~~lf 1234 (1370)
+.+.=|.+|..+=+.|.. +-...++|-.|=. +.|--|=- =|+.+ .|+.|-..++.-|.- .+..-|
T Consensus 1017 ----d~~~Cr~AA~~LA~rLa~--ep~L~~amdaQ~lan~LNALSK---WPde~---~Cr~Aa~aLA~rL~~d~~Lr~Al 1084 (2710)
T PRK14707 1017 ----QMPVCAATVEALAARLSN--DPGLCKALSSQGLTTVLNALCK---WPEMP---VCLAAASALAERLSDDLVLRNAL 1084 (2710)
T ss_pred ----CchHHHHHHHHHHHHhcc--CHhhhhhcchHHHHHHHHhhcc---CCCch---hHHHHHHHHHHHhhccHHHHHhh
Confidence 456677888888777754 1112344444422 22222111 11111 333333333321111 111100
Q ss_pred ccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH-hhcCCC-hhHHHHHHHHHhhhhccCchhhhhhccHHHH
Q 000655 1235 NSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ-AFEAPW-PIIQANAIYFSSSILCLCDDQHILSLFYTQV 1312 (1370)
Q Consensus 1235 ~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~-y~kS~~-~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l 1312 (1370)
.| ..+.++++ +.|=|. +.-|.+|.-+++-+.... +.+...+...+
T Consensus 1085 ---------------------------~a----Q~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~--~l~~~fd~q~v 1131 (2710)
T PRK14707 1085 ---------------------------DS----QGFGNALNALSKWPDSPVCAAAASALAKRLTDDA--GLRHVFDPINV 1131 (2710)
T ss_pred ---------------------------ch----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcccc--chhccCCHHHH
Confidence 01 12223333 333333 337777777788776433 34444555666
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHH
Q 000655 1313 FGLLVVKLSQSADAIVRATCSSSLG 1337 (1370)
Q Consensus 1313 ~~~L~~~Ll~Dpdp~VR~~Aa~aL~ 1337 (1370)
-++|-. |.+=|+..+.+.|+.+|.
T Consensus 1132 A~~LNA-LSKWp~~~~cr~Aa~~LA 1155 (2710)
T PRK14707 1132 SQALNA-LSKWPGTQACESAIDVLA 1155 (2710)
T ss_pred HHHHHH-HhcCCCchHHHHHHHHHH
Confidence 666666 666688888888887764
No 200
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=37.74 E-value=2.1e+02 Score=29.32 Aligned_cols=90 Identities=6% Similarity=0.032 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhc-cHHHHHHHHHHHhccCCCh---
Q 000655 1251 VRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSL-FYTQVFGLLVVKLSQSADA--- 1326 (1370)
Q Consensus 1251 ~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~-~~e~l~~~L~~~Ll~Dpdp--- 1326 (1370)
+++|++.-.. .++.....+.-...-+++..++||.=|-..|-++....+.+....+ ..-.++..+.. -..-|||
T Consensus 22 ~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~-f~g~~Dp~~G 99 (122)
T cd03572 22 YEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECAN-YKGPPDPLKG 99 (122)
T ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHH-cCCCCCcccC
Confidence 3455554333 5566666666667778888899999999999999988875554332 12235566666 5655555
Q ss_pred -----hhHHHHHHHHHHHHHH
Q 000655 1327 -----IVRATCSSSLGWLLKS 1342 (1370)
Q Consensus 1327 -----~VR~~Aa~aL~~l~k~ 1342 (1370)
.||..|.+++..++-+
T Consensus 100 d~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 100 DSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred cchhHHHHHHHHHHHHHHhcc
Confidence 8999999999998754
No 201
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=37.21 E-value=2.7e+02 Score=38.47 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhh---hhhHHHHHHHHHhhcccCCh--hHHHHHHHHHHHHhccCC
Q 000655 1066 SLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHI---HQYATQVLSVILALLDDLDE--SVQLTAVSCLLTILKSSS 1140 (1370)
Q Consensus 1066 ~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v---~~~~~~lL~all~~L~d~d~--~V~leAm~~L~~lL~~l~ 1140 (1370)
.+...+++...+++.|++-.||.-|.+-+..++...+ ..-...++..+.+.+.+-|+ .-.-.-|..|.++.-...
T Consensus 204 ~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~e 283 (1549)
T KOG0392|consen 204 QLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENE 283 (1549)
T ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHH
Confidence 3455677888899999999999999999888775421 11122333333333333232 111222333333332210
Q ss_pred cCCc---chhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcc-----------hHHHHHHHHhhhhHHHHhccC
Q 000655 1141 KDAV---EPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQ-----------REAFLEQIHAMLPRLILHIYD 1206 (1370)
Q Consensus 1141 ~~~~---~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~-----------~~~~~eQv~~~LvpLLlHL~D 1206 (1370)
...+ -+.-..++.++.||.-++=..+|.++.+..-.+.....++. +..|..-++...++.|.|+.+
T Consensus 284 vl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs~~~~~~~l~~~~r~ifq~ll~e~~~e~L~~~~~ 363 (1549)
T KOG0392|consen 284 VLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQSDSWQIRILGKLFRKIFQILLLESFNEILDLSEK 363 (1549)
T ss_pred HHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHHHHHHHhCCcHHHHHhhhh
Confidence 0000 01113567778999999999999999999999887554433 222333455677788888887
Q ss_pred CChhH----HHHHHHHHHhhchhhh
Q 000655 1207 DDLSV----RQACRNTLKQVAPFME 1227 (1370)
Q Consensus 1207 ~~~~V----~~ack~tL~~~a~lL~ 1227 (1370)
.-..| ..+|.+.+.+..+.++
T Consensus 364 ~~v~v~~~~k~a~~~~~~~~~l~~~ 388 (1549)
T KOG0392|consen 364 VWVTVSKIEKTAAAYLLSWIYLLIQ 388 (1549)
T ss_pred eeeehHHHHHHHHHHHHHHHHhhhC
Confidence 64432 4566666666665443
No 202
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=36.73 E-value=1.1e+03 Score=33.91 Aligned_cols=133 Identities=13% Similarity=0.164 Sum_probs=79.7
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchh
Q 000655 1069 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPI 1147 (1370)
Q Consensus 1069 ~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~ 1147 (1370)
+..++.+...+..|.+.+|.-|+|.|++|... ..-.-.+.+..++-.-+-|....|+-.|+.-+|+-+-.- ++.+.-+
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~qy 893 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQY 893 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHHH
Confidence 44556666667778888888888888887643 222223566667777777777777777777777765442 2223334
Q ss_pred HHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHH
Q 000655 1148 LLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVR 1212 (1370)
Q Consensus 1148 l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~ 1212 (1370)
.-.|+.| .-|..-.||--+|....+++---. =..-+-...+.++-..+|++..|.
T Consensus 894 Y~~i~er----IlDtgvsVRKRvIKIlrdic~e~p------df~~i~~~cakmlrRv~DEEg~I~ 948 (1692)
T KOG1020|consen 894 YDQIIER----ILDTGVSVRKRVIKILRDICEETP------DFSKIVDMCAKMLRRVNDEEGNIK 948 (1692)
T ss_pred HHHHHhh----cCCCchhHHHHHHHHHHHHHHhCC------ChhhHHHHHHHHHHHhccchhHHH
Confidence 4444444 356777888888888887775111 011222344555555555555444
No 203
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=36.45 E-value=2.9e+02 Score=30.16 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=76.4
Q ss_pred cCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhc----hhh-----
Q 000655 1156 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA----PFM----- 1226 (1370)
Q Consensus 1156 rpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a----~lL----- 1226 (1370)
..++-+.++.+|.+|+.+.+-+.+.|- ..| ..+++.|+--.-|+++.|+..+...+.... .++
T Consensus 14 l~~~~~~~~~vr~~Al~~l~~il~qGL---vnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~ 85 (187)
T PF12830_consen 14 LELCLSSDDSVRLAALQVLELILRQGL---VNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYS 85 (187)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhcCC---CCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 346678899999999999999998542 222 147777777888999999999987777764 222
Q ss_pred hh-hhhhhhccccCCcCCCCC---hHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC
Q 000655 1227 EI-GVYGIFNSHCFNSDHRSD---YETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW 1281 (1370)
Q Consensus 1227 ~w-~l~~lf~~~~~~~~~~l~---~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~ 1281 (1370)
.- +..--|++....+..+.. ...+...+...+. .....-..|+.+.+..|....
T Consensus 86 ~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 86 EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhc
Confidence 22 333334443222222222 4566666665554 556666778888888777653
No 204
>PRK09169 hypothetical protein; Validated
Probab=35.54 E-value=1.9e+03 Score=33.18 Aligned_cols=238 Identities=17% Similarity=0.117 Sum_probs=137.2
Q ss_pred ChHHHHHHHHH-------HHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHhHhhh-------cCchhHHHHHHHHhh
Q 000655 972 EPLRAILTSFQ-------AFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSI-------KRPKEVQTICLILTK 1037 (1370)
Q Consensus 972 ~P~~~aleAlk-------~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~-------~~~~~~~~i~~~L~~ 1037 (1370)
..|+.+.+++- .++....-+++.+.+.--..|-+....-.....||..++. .+++.+.++++-|.+
T Consensus 515 ~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSK 594 (2316)
T PRK09169 515 DACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSK 594 (2316)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhh
Confidence 45666766662 3455566667777776656787555555566666766543 356678888888888
Q ss_pred hhcccccCcchHHHHHHHHhhhcCCch----hhHHHHHHHHHHhhcCCCChhHHHHHhhhccC-Ccch--hhhhhHHHHH
Q 000655 1038 SINRQQRFQREAAAAALSEFVRYSGGF----DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQ-IPSI--HIHQYATQVL 1110 (1370)
Q Consensus 1038 ~L~s~~~~~Ri~a~af~sELl~~~~~~----~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgn-l~~~--~v~~~~~~lL 1110 (1370)
.-. ....|-++.+....+...+... ..-+-++++.|.+|=. ......+...|.. ++.+ ....+.++-|
T Consensus 595 WP~--~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~---~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~L 669 (2316)
T PRK09169 595 WPD--EDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPD---EDDCRQAAEALAARLLRDAGLPRAFDAQGL 669 (2316)
T ss_pred CCC--chhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHhhcchhHHhcCcHHH
Confidence 732 3455667777777777765331 1112346777777742 2233333333332 1111 1222333334
Q ss_pred HHHHhhccc-CChhHHHHHHHHHHHH-------hccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCC
Q 000655 1111 SVILALLDD-LDESVQLTAVSCLLTI-------LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGV 1182 (1370)
Q Consensus 1111 ~all~~L~d-~d~~V~leAm~~L~~l-------L~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~ 1182 (1370)
.-++.+|.. .+++.-.+|...|..- .+.++.+++...+-.+ --+.+. +.=|.++-.+.|.|.. +
T Consensus 670 aN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAl----sKwp~~--~acr~A~~~LA~rL~~--~ 741 (2316)
T PRK09169 670 ANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNAL----SKWPEE--EACRAAAEALAGRLAA--D 741 (2316)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHH----HhccCc--cHHHHHHHHHHHHHhc--C
Confidence 444445444 2445566666666433 3444444444443333 223333 4688999999999997 2
Q ss_pred CcchHHHHHH-HHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh
Q 000655 1183 GSQREAFLEQ-IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI 1228 (1370)
Q Consensus 1183 ~~~~~~~~eQ-v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w 1228 (1370)
......|..| |-++|--|=-..+++ +|+.++-.++..+|.
T Consensus 742 ~~l~~a~~aQ~lAnsLNaLsKwp~~~------~c~~a~~~La~~lg~ 782 (2316)
T PRK09169 742 ADLRQAMNPQGLANSLNALSKWPQEP------ACQQAALLLAERLGS 782 (2316)
T ss_pred hHHHhhcCHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcc
Confidence 3344567666 667777766665554 788888888888777
No 205
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=35.00 E-value=53 Score=33.32 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=22.8
Q ss_pred HHHHHhhcccCChhHHHHHHHHHHHHhc
Q 000655 1110 LSVILALLDDLDESVQLTAVSCLLTILK 1137 (1370)
Q Consensus 1110 L~all~~L~d~d~~V~leAm~~L~~lL~ 1137 (1370)
-..+|..+.+.|++|..+|+.++++++.
T Consensus 88 K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 88 KERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4557888888899999999999999874
No 206
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.53 E-value=5.9e+02 Score=33.16 Aligned_cols=277 Identities=17% Similarity=0.106 Sum_probs=138.1
Q ss_pred hhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhh
Q 000655 1026 KEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQY 1105 (1370)
Q Consensus 1026 ~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~ 1105 (1370)
|-+-.-+.++-+++-+.++. +.+++..=..+.++- ... --+.++..|.+.+..++..+|.-++-|||-.-.+.-
T Consensus 411 Wnvd~gL~qldkylys~~~~-ikaGaLLgigi~~~g-v~n-e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq--- 484 (878)
T KOG2005|consen 411 WNVDKGLEQLDKYLYSDESY-IKAGALLGIGISNSG-VFN-ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQ--- 484 (878)
T ss_pred ecchhhHHHHHHHhhcCCch-hhhccceeeeeeccc-ccc-ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCc---
Confidence 45666777777777765443 333332222333321 111 124567788888899999999999999996543311
Q ss_pred HHHHHHHHHhhcccCChh--HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCC-----ChHHHHHHHHHHHHhh
Q 000655 1106 ATQVLSVILALLDDLDES--VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSM-----NVKMRRNAFAAFGALS 1178 (1370)
Q Consensus 1106 ~~~lL~all~~L~d~d~~--V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede-----~~~vR~aAi~LfG~L~ 1178 (1370)
..+++.-+..-+.|.+.+ |+.-|-.+|+.|.--.-..++.+..+ ..|.|+. ..-.|-.+..| | +.
T Consensus 485 ~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~il------qtlmekse~El~d~~~RFL~LGL-~-ll 556 (878)
T KOG2005|consen 485 REEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSIL------QTLMEKSETELEDQWFRFLALGL-A-LL 556 (878)
T ss_pred hHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHH------HHHHHhhhhhhhchHHHHHHHHH-H-HH
Confidence 122333333445555555 55555555666654333344333222 2344443 34455544433 1 12
Q ss_pred ccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhc-----hhhhh-h--hhhhhccccCCcCCCCChHHH
Q 000655 1179 NFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA-----PFMEI-G--VYGIFNSHCFNSDHRSDYETF 1250 (1370)
Q Consensus 1179 ~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a-----~lL~w-~--l~~lf~~~~~~~~~~l~~~~f 1250 (1370)
-.+.+...+++.+-+.. -+...++.|-..+..|+ +.++. + +......|. .+++. +-+-.
T Consensus 557 flgkqe~~d~~~e~~~~-----------i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~-~~~e~-~~~~a 623 (878)
T KOG2005|consen 557 FLGKQESVDAVVETIKA-----------IEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHD-ADLES-EQELA 623 (878)
T ss_pred HhcccchHHHHHHHHHH-----------hhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCc-cchhh-hccch
Confidence 23344444444333221 13344555555555554 33333 1 112222221 11100 00000
Q ss_pred HHHHHHHHH-Hh-CcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhh
Q 000655 1251 VRDLTRQFV-QH-FPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIV 1328 (1370)
Q Consensus 1251 ~~~i~k~L~-~~-~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~V 1328 (1370)
+--+.-.-| ++ -.+..-..+...+.| -.++||++-.+-.|.+.-.-| + --++..|.+ ..+|.|+.|
T Consensus 624 vLgiAliAMgeeig~eM~lR~f~h~l~y---ge~~iRravPLal~llsvSNP-q-------~~vlDtLsk-~shd~D~ev 691 (878)
T KOG2005|consen 624 VLGIALIAMGEEIGSEMVLRHFGHLLHY---GEPHIRRAVPLALGLLSVSNP-Q-------VNVLDTLSK-FSHDGDLEV 691 (878)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHc---CCHHHHHHHHHHHhhhccCCC-c-------chHHHHHHH-hccCcchHH
Confidence 001111111 11 122333344444444 367899988888886543222 2 236778888 899999999
Q ss_pred HHHHHHHHHHHHH
Q 000655 1329 RATCSSSLGWLLK 1341 (1370)
Q Consensus 1329 R~~Aa~aL~~l~k 1341 (1370)
-..|--|+|.++.
T Consensus 692 a~naIfamGLiGA 704 (878)
T KOG2005|consen 692 AMNAIFAMGLIGA 704 (878)
T ss_pred HHHHHHHhccccC
Confidence 9999999998874
No 207
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.82 E-value=1.4e+03 Score=31.05 Aligned_cols=396 Identities=11% Similarity=0.113 Sum_probs=188.3
Q ss_pred hhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHh----cCCCCccchhhHHHHHHHHhhhcHH--------HHHHHHHHH
Q 000655 316 DDHSALLHRCLGILLQKVADRNYVCDKIDWMYKQ----ANIAIPTNRLGLAKAMGLVAASHLD--------AVLEMLKGI 383 (1370)
Q Consensus 316 ~~eK~fL~k~lG~~L~~~~~~~~V~~~L~~ll~~----~~~~~~~ereG~A~~~G~~A~~Hld--------~vL~~L~~~ 383 (1370)
..--+||+.-+|-.++..+..-.+-+|++.++-. +.|-...+-.-+-.+||.+|+..+. ++...+...
T Consensus 457 d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~ 536 (982)
T KOG2022|consen 457 DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSL 536 (982)
T ss_pred HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHH
Confidence 3344888888999999888555555676655532 3444445555678889998887654 333333222
Q ss_pred Hhhhccccch--hhhh-hcccc-cccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhhhhHhhhhc--ccChhHHH
Q 000655 384 LDNIGQSLFQ--RLLS-FFSNS-YRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLH--VRHHTAKQ 457 (1370)
Q Consensus 384 ~~~~~~~~~~--~~l~-~~k~~-~~~~e~~~~ks~l~l~YG~va~~ap~~~il~~ve~~I~~~i~~~~~~--~kd~~lK~ 457 (1370)
..--+...+. -.+. .|.-- ..+.. .-.+...-.++..|| +.+.+..|..+- ....+++ ....+...
T Consensus 537 s~~l~e~P~~ln~sl~~L~~~Lh~sk~s-----~q~i~tl~tlC~~C~-~~L~py~d~~~a--~~~e~l~~~~~~~S~~~ 608 (982)
T KOG2022|consen 537 SNWLGEHPMYLNPSLPLLFQGLHNSKES-----EQAISTLKTLCETCP-ESLDPYADQFSA--VCYEVLNKSNAKDSDRL 608 (982)
T ss_pred HHHHhcCCcccCchHHHHHHHhcCchHH-----HHHHHHHHHHHHhhh-hhCchHHHHHHH--HHHHHhcccccCchHHH
Confidence 2111011000 0000 11100 11111 111222566677775 556677765331 3344443 23445677
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcCCCCHHHHHHHHHHHhccCCCCCCCCchhhhHhHHHHHHHHhhhhcccCCCCChhHH
Q 000655 458 AVITAIDLLGRAVINAAENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETR 537 (1370)
Q Consensus 458 s~l~sv~~i~~av~~~~~~~~~f~f~~k~eLl~~l~~li~~ep~~~l~s~~~~l~~vr~~am~ait~L~~L~P~l~~e~~ 537 (1370)
.+++||.-+.+.+.+. .. -|.-..|++.+..-++.- +.|-.+ ..
T Consensus 609 klm~sIGyvls~~~pE--e~----~kyl~~lin~il~qle~~----------------------------l~~~i~--~~ 652 (982)
T KOG2022|consen 609 KLMKSIGYVLSRLKPE--EI----PKYLMKLINPILSQLEIN----------------------------LAPGID--DQ 652 (982)
T ss_pred HHHHHHHHHHHhccHH--hH----HHHHHHHHHHHHHHHHHh----------------------------hcCCCC--CH
Confidence 7888887777776542 11 112223333333222211 122221 11
Q ss_pred HHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhcChhHHHhhHHHHHHHHHH
Q 000655 538 NHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILRQIDQYVSSPVEYQRRRSCLAVYEML 617 (1370)
Q Consensus 538 ~~ll~~c~~v~~lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~iL~~l~pwl~S~~~heR~RA~~~~~~lL 617 (1370)
.+-+.+|+ .+..+..|.++++-+... ..-..-.....||=+++...-|.+++..+-+++
T Consensus 653 e~~l~~~~---------------~l~~iS~LftSL~~~~~~------~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~ 711 (982)
T KOG2022|consen 653 ENHLRIAF---------------QLNTISALFTSLINKKDI------IDTDQPEQREEPFQQFPILQVLQKAIPVFEKVL 711 (982)
T ss_pred HHHHHHHH---------------HHHHHHHHHhccCCCCcc------ccccchhhhccccccCCHHHHHHHHHHHHHHHH
Confidence 12222222 112233444444444332 112223446678888888888888888877777
Q ss_pred HHHHhh--hhcccccCCCCCCccchhhhhhhhhccCCCCCCcccCCchhhhhhhhHHHHhhccccCCChhHHHHHHHHHH
Q 000655 618 LKFRTL--CVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDSEVRKISAQILD 695 (1370)
Q Consensus 618 ~~~~~~--~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~f~~lG~Lvg~l~prC~D~~~~iR~~A~~~i~ 695 (1370)
..+.+. -|...|..-.|+ .-...+| |..| -.+.+-..++++.++|.=+-.++-...+-+=+
T Consensus 712 s~~~~~s~vve~~C~i~~~~--------------v~~~~~s-F~~p--~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~ 774 (982)
T KOG2022|consen 712 SMWLGLSDVVEASCIIMVKG--------------VRSLLTS-FPEP--MLPSLCPFIVRFLTSCLAVTLSLIAACLLAKS 774 (982)
T ss_pred HHHhcchhHHHHHHHHHHhc--------------ccccccc-chhh--hHHHHHHHHHHhccchHHHHHHHHHHHHHhhh
Confidence 755431 111233211122 1122233 4222 22456677888999997665444433322211
Q ss_pred HHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCC-CCCh--hHHHHHHHHHHHccCC------hhHHHHHHH
Q 000655 696 QLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDA-SIDP--SEVFNRIVSSVCILLT------KDELVATLH 766 (1370)
Q Consensus 696 ~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~d~~~~l~~~~-~~~~--~~~~~~i~~~i~~~L~------~~el~~~l~ 766 (1370)
.- ++--.....+. ...+.+ -+....... .++| -..|..+...+-|+.| .-..+.++.
T Consensus 775 ~~----------~~~~~lv~~~~-~~~~q~---sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~ 840 (982)
T KOG2022|consen 775 TV----------EQCKPLVGQDM-ANAFQQ---SLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLIL 840 (982)
T ss_pred cc----------ccccccHHHHH-HHHHHH---HHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHH
Confidence 00 00000000000 111111 111111111 1222 2222233333333333 345677888
Q ss_pred -HHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHH
Q 000655 767 -SCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQ 808 (1370)
Q Consensus 767 -~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~ 808 (1370)
..+.+|+.|++.-..+|++.++.++...++..-.+ |-+.+.
T Consensus 841 ~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~~t-v~~~V~ 882 (982)
T KOG2022|consen 841 ICAFILLNSPEPTTIRAASQFLTALATYATSHDLVT-VTSVVA 882 (982)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHhhcccchhHH-HHHHHH
Confidence 88999999999999999999999988777644233 444433
No 208
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=33.22 E-value=1.4e+03 Score=31.02 Aligned_cols=272 Identities=14% Similarity=0.147 Sum_probs=145.5
Q ss_pred HHHHHHhhhcCCchhhHHHHHHHH-HHhhcCCCChhHHHHHhhhccCCcch-hhhhhHHHHHHHHHhhcccCChhHHHHH
Q 000655 1051 AAALSEFVRYSGGFDSLLEQMVEA-LCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESVQLTA 1128 (1370)
Q Consensus 1051 ~af~sELl~~~~~~~~l~~~~i~~-L~~~l~D~~~~VR~lsLrGLgnl~~~-~v~~~~~~lL~all~~L~d~d~~V~leA 1128 (1370)
..|++.|..+-.....+....++. +.....|..+-+|.-++|.+...... -.....|.+|+.++...-+..++|..--
T Consensus 471 ~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~ll 550 (1005)
T KOG2274|consen 471 FLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLL 550 (1005)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHH
Confidence 344444444333333444444443 44455888899999999966655432 2345668888888888888778888778
Q ss_pred HHHHHHHhccCCcCCcchhHHhHHhhhcCcCc--CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccC
Q 000655 1129 VSCLLTILKSSSKDAVEPILLNLSVRLRNLQV--SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYD 1206 (1370)
Q Consensus 1129 m~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe--de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D 1206 (1370)
|.+|+-+... +.+...+.--.|+-.+-..|- .+.+.|-.-|=.+|-+++.. ..+..++.+-..-++|..+--=.|
T Consensus 551 mE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~--~~~~g~m~e~~iPslisil~~~~~ 627 (1005)
T KOG2274|consen 551 MEALSSVVKL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI--AANYGPMQERLIPSLISVLQLNAD 627 (1005)
T ss_pred HHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH--HHhhcchHHHHHHHHHHHHcCccc
Confidence 8888877653 222211111111111111222 35567888888999999973 345566666666666664432222
Q ss_pred CChhHHHHHHHHHHhhchhhhh---hhh---------hhhccccCCcCC--CCC-hHHHHHHHHHH----HHHh--Ccch
Q 000655 1207 DDLSVRQACRNTLKQVAPFMEI---GVY---------GIFNSHCFNSDH--RSD-YETFVRDLTRQ----FVQH--FPSR 1265 (1370)
Q Consensus 1207 ~~~~V~~ack~tL~~~a~lL~w---~l~---------~lf~~~~~~~~~--~l~-~~~f~~~i~k~----L~~~--~~~~ 1265 (1370)
..+ ..-|..++--+..+++- ++. ++.+-- ++.|+ .+. -+|.++.+... +.+. .|+.
T Consensus 628 ~~~--~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t-lHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~ 704 (1005)
T KOG2274|consen 628 KAP--AGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT-LHSDDHETLQNATECLRALISVTLEQLLTWHDEPGH 704 (1005)
T ss_pred ccC--chhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe-eecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCc
Confidence 333 44555555555544433 222 222211 22221 111 12232222111 2222 3566
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhcc--HHHHHHHHHHHhccCCChhhHH
Q 000655 1266 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLF--YTQVFGLLVVKLSQSADAIVRA 1330 (1370)
Q Consensus 1266 ~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~--~e~l~~~L~~~Ll~Dpdp~VR~ 1330 (1370)
--||+++.+.-+=||.. -..|+.|+|-++-.+-+..-++++ .+++..|...+|++-+.+.|-.
T Consensus 705 ~~~yImqV~sqLLdp~~--sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQ 769 (1005)
T KOG2274|consen 705 NLWYIMQVLSQLLDPET--SDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQ 769 (1005)
T ss_pred cHHHHHHHHHHHcCCcc--chhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 67899999998887764 344556999766544322222222 3445555444466655555443
No 209
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=33.14 E-value=2.5e+02 Score=35.88 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=54.9
Q ss_pred hhccccCcHHHHHHHHHHhhhhcCC---CChhhHHHHHHHHHHHHHhc------CChhHHHHHHHHHHHhcCCCCccchh
Q 000655 289 LDVVQETDWLISLGNAFTEQYVLYT---PDDDHSALLHRCLGILLQKV------ADRNYVCDKIDWMYKQANIAIPTNRL 359 (1370)
Q Consensus 289 l~~i~d~~W~~~L~~el~~q~~~y~---~~~~eK~fL~k~lG~~L~~~------~~~~~V~~~L~~ll~~~~~~~~~ere 359 (1370)
-..++|.+|..+=.+.++=-+.+-. +...||.|+...+--.|+-| +||++|...+.-.+. .|.
T Consensus 487 arq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvG--QYp------ 558 (1053)
T COG5101 487 ARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVG--QYP------ 558 (1053)
T ss_pred HHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeec--cch------
Confidence 3457888999876666665555554 44788999988776666544 778877766654444 121
Q ss_pred hHHHHHHHHhhhcHHHHHHHHHHHHh
Q 000655 360 GLAKAMGLVAASHLDAVLEMLKGILD 385 (1370)
Q Consensus 360 G~A~~~G~~A~~Hld~vL~~L~~~~~ 385 (1370)
-|=.+--+-|.+|..||=+|..
T Consensus 559 ----RFLkahw~FLkTVv~KLFEFMh 580 (1053)
T COG5101 559 ----RFLKAHWSFLKTVVKKLFEFMH 580 (1053)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1223344567888888877765
No 210
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=33.09 E-value=9.7e+02 Score=31.48 Aligned_cols=78 Identities=12% Similarity=-0.009 Sum_probs=45.7
Q ss_pred hhcCCChh----HHHHHHHHHh-hhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH--HHcccccc
Q 000655 1276 AFEAPWPI----IQANAIYFSS-SILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL--KSINSHSW 1348 (1370)
Q Consensus 1276 y~kS~~~~----IR~aA~~fiG-~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~--k~~~~~~~ 1348 (1370)
|+-+.+.+ ||.-|+..+. ++++......+ -+.+ +.-||-|..|..|-||+..+. +-|..+-.
T Consensus 699 Y~~d~rGDVgs~iR~~a~klm~SfL~kD~~~~~~----------y~iR-~~~dki~~lR~l~yqa~eqI~v~~~s~~~~~ 767 (993)
T COG5234 699 YLTDTRGDVGSWIRKPAMKLMSSFLVKDSSGKKL----------YIIR-QTFDKIDSLRGLAYQALEQIRVHYLSRRCEA 767 (993)
T ss_pred hccccccchhHHHHHHHHHHHHHHhhccccCCch----------hHHH-HhhcccHHHHhhhhhhhhheeeehhhhhhhh
Confidence 55555543 6888876655 55555442221 3566 678999999999999988765 22222222
Q ss_pred ccccccccccccccccc
Q 000655 1349 RSTRLERVESFRWGYES 1365 (1370)
Q Consensus 1349 ~~~~~~~~~~~~~~~~~ 1365 (1370)
+.+.-- -.++|+||.+
T Consensus 768 ~~~~g~-~~~fr~g~~v 783 (993)
T COG5234 768 LTNIGN-RISFRNGPNV 783 (993)
T ss_pred hccccc-hheeecCCCC
Confidence 222221 2456666654
No 211
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.04 E-value=1.4e+02 Score=40.01 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhc------------------------------
Q 000655 1187 EAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFN------------------------------ 1235 (1370)
Q Consensus 1187 ~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~------------------------------ 1235 (1370)
+.|...+...+.|++.|+.++++.|.+.+..++..++.-++. .+..++.
T Consensus 581 ~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~~s~~~~~Vl~vV 660 (1014)
T KOG4524|consen 581 EEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSGMSPRVPDVLMVV 660 (1014)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCCCCchhHHHHHHH
Q ss_pred -cccCCcCCCCCh-HHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHh-hhhccCchhhhhhccH---
Q 000655 1236 -SHCFNSDHRSDY-ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSS-SILCLCDDQHILSLFY--- 1309 (1370)
Q Consensus 1236 -~~~~~~~~~l~~-~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG-~l~~~~~~~~~~~~~~--- 1309 (1370)
+ ..+++..+| ++.+.++|+.+-..+.-. |.+||.-=...||..+.+|+. .++++..+++..+...
T Consensus 661 l~--~s~~~~i~~l~dvvq~i~~~lD~yH~~~-------~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~~~k~l~ 731 (1014)
T KOG4524|consen 661 LQ--YSDYGTIPNLKDVVQTIFKLLDYYHGYS-------CLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQSTKVLN 731 (1014)
T ss_pred hh--cCCCCchhhHHHHHHHHHHHHHHhcccc-------hhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHhh
Q ss_pred ------HHHHHHHHHHhccCCChhhHHHH
Q 000655 1310 ------TQVFGLLVVKLSQSADAIVRATC 1332 (1370)
Q Consensus 1310 ------e~l~~~L~~~Ll~Dpdp~VR~~A 1332 (1370)
+...+...+ +.+|=.+..+.++
T Consensus 732 e~p~~~~e~~n~~~d-~~~~l~~~~~e~~ 759 (1014)
T KOG4524|consen 732 ELPTQVKELINDEND-LKDDLEPSNFEKD 759 (1014)
T ss_pred cchhhHHHhhhhHHH-HHHhhhhHHHHHH
No 212
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=32.69 E-value=2.9e+02 Score=28.60 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccC-C
Q 000655 1246 DYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS-A 1324 (1370)
Q Consensus 1246 ~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D-p 1324 (1370)
+++.+ -++|-.+-.. ++....-+...-..++++.+.+...|..++..++++.++....++......+.|.. +..+ +
T Consensus 22 Dw~~~-l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~-l~~~~~ 98 (140)
T PF00790_consen 22 DWSLI-LEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVK-LIKSKK 98 (140)
T ss_dssp -HHHH-HHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH-HHHHTT
T ss_pred CHHHH-HHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHH-HHccCC
Confidence 34444 4678855444 77778888887889999999999999999999999998777777766667777777 4443 2
Q ss_pred C-hh--hHHHHHHHHHHHH
Q 000655 1325 D-AI--VRATCSSSLGWLL 1340 (1370)
Q Consensus 1325 d-p~--VR~~Aa~aL~~l~ 1340 (1370)
. +. ||.++.+-+....
T Consensus 99 ~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 99 TDPETPVKEKILELLQEWA 117 (140)
T ss_dssp THHHSHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHH
Confidence 2 22 8988887765544
No 213
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=32.50 E-value=42 Score=24.90 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=21.2
Q ss_pred hHHHHHhhhccCCcchhhhhhHHHHHHHHHhhccc
Q 000655 1085 TVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDD 1119 (1370)
Q Consensus 1085 ~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d 1119 (1370)
.||..+..+||+++. +..++.+...|.|
T Consensus 2 ~vR~~aa~aLg~~~~-------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD-------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC-------HhHHHHHHHHhcC
Confidence 689999999999975 4556666666654
No 214
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.47 E-value=8.7e+02 Score=35.49 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhc----chHHHHHHHhc---CCCC--ChhhHHHHHHHHHh-HhhhcCchhHHHHHHHHhhhhcccc
Q 000655 974 LRAILTSFQAFCECVG----DLEMRKILARD---GEQN--DKEKWINLIGDVAG-CVSIKRPKEVQTICLILTKSINRQQ 1043 (1370)
Q Consensus 974 ~~~aleAlk~ll~~~g----~~~~~~~L~~~---g~W~--~~e~~~~gV~lLAr-~m~~~~~~~~~~i~~~L~~~L~s~~ 1043 (1370)
|+....++|.+-..-| ..+....+... +.-. .+-.-.-+...+|| +-+....+-+..+....+.-+.|..
T Consensus 849 ~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~ 928 (2067)
T KOG1822|consen 849 WQALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASAR 928 (2067)
T ss_pred HHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcC
Q ss_pred cCcchHHHHHHHHhhhcCCc---hhhHHHHHHHHHHhhcCCCCh-hHHHHHhhhccCCcch---hhhhhHHHHHHHHHhh
Q 000655 1044 RFQREAAAAALSEFVRYSGG---FDSLLEQMVEALCRHVSDESP-TVRGLCLRGLVQIPSI---HIHQYATQVLSVILAL 1116 (1370)
Q Consensus 1044 ~~~Ri~a~af~sELl~~~~~---~~~l~~~~i~~L~~~l~D~~~-~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~ 1116 (1370)
+..+-+.....-..+..-++ ...-+.+.+..|..--.|+++ .|+.++|++|.-+... -.+.|..+-+..++..
T Consensus 929 d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~l 1008 (2067)
T KOG1822|consen 929 DPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKL 1008 (2067)
T ss_pred CcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHH
Q ss_pred cccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCc--------------------CCChHHHHHHHHHHHH
Q 000655 1117 LDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV--------------------SMNVKMRRNAFAAFGA 1176 (1370)
Q Consensus 1117 L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffe--------------------de~~~vR~aAi~LfG~ 1176 (1370)
|-. +++...+--.+.++.+. +..+.+.++-.+-..++|-++ ++++.+-++||..|-+
T Consensus 1009 Lls-~p~~~~ev~q~~~R~~~--~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqq 1085 (2067)
T KOG1822|consen 1009 LLS-VPTSHVEVHQCYNRCFN--GDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQ 1085 (2067)
T ss_pred cCC-CCcchhhhhhhhccccc--cchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Q ss_pred hhcc-CCCcchHHHHHHHHhhh
Q 000655 1177 LSNF-GVGSQREAFLEQIHAML 1197 (1370)
Q Consensus 1177 L~~~-~~~~~~~~~~eQv~~~L 1197 (1370)
+.-| .+....+.|.-++...+
T Consensus 1086 lhlFapr~~n~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1086 LHLFAPRHVNLDSLVLQLCSLL 1107 (2067)
T ss_pred HHhhcchhccHHHHHHHHHHHh
No 215
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=32.43 E-value=2.8e+02 Score=28.58 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCCh--hh
Q 000655 1251 VRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA--IV 1328 (1370)
Q Consensus 1251 ~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp--~V 1328 (1370)
.-++|-.+-.. ++....-+...-.-++++.+.+..-|...+..++++.......++......+.|.. +..++.+ .|
T Consensus 21 ~l~icD~i~~~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~-l~~~~~~~~~V 98 (133)
T smart00288 21 ILEICDLINST-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVK-LIKPKYPLPLV 98 (133)
T ss_pred HHHHHHHHhCC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHH-HHcCCCCcHHH
Confidence 34777766555 67777777777779999999999999999999999988766667767777888888 5655433 38
Q ss_pred HHHHHHHHHHHH
Q 000655 1329 RATCSSSLGWLL 1340 (1370)
Q Consensus 1329 R~~Aa~aL~~l~ 1340 (1370)
|.++.+.+..-.
T Consensus 99 k~kil~li~~W~ 110 (133)
T smart00288 99 KKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHH
Confidence 888877765544
No 216
>PF05536 Neurochondrin: Neurochondrin
Probab=32.37 E-value=1.2e+03 Score=30.00 Aligned_cols=259 Identities=15% Similarity=0.141 Sum_probs=135.6
Q ss_pred HHhhhcCCchhhHHHH-HHHHHHhhcCCCChhHHHHHhhhccCCcch-------hhhhhHHHHHHHHHhhcccCChhHHH
Q 000655 1055 SEFVRYSGGFDSLLEQ-MVEALCRHVSDESPTVRGLCLRGLVQIPSI-------HIHQYATQVLSVILALLDDLDESVQL 1126 (1370)
Q Consensus 1055 sELl~~~~~~~~l~~~-~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~-------~v~~~~~~lL~all~~L~d~d~~V~l 1126 (1370)
.-+..++.+...+++. .+..|.+-..+ ++.....+++-|.++... +-......+++.+-..+.........
T Consensus 124 ~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kf 202 (543)
T PF05536_consen 124 LAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKF 202 (543)
T ss_pred HHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHH
Confidence 3333344443333322 34444444433 555566666655554321 12233345566666666655667888
Q ss_pred HHHHHHHHHhccCCcC-----CcchhHHhHHhhhcCcCc-CCChHHHHHHHHHHHHhhccCCC-------c-chHHHHHH
Q 000655 1127 TAVSCLLTILKSSSKD-----AVEPILLNLSVRLRNLQV-SMNVKMRRNAFAAFGALSNFGVG-------S-QREAFLEQ 1192 (1370)
Q Consensus 1127 eAm~~L~~lL~~l~~~-----~~~~~l~~i~~~lrpffe-de~~~vR~aAi~LfG~L~~~~~~-------~-~~~~~~eQ 1192 (1370)
++..-|+.+|...+.. ....-..+|..-|+..+. +-.+.-|..|..+.+.|....+. + ..+.|.--
T Consensus 203 ell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~L 282 (543)
T PF05536_consen 203 ELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLL 282 (543)
T ss_pred HHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHH
Confidence 8899999999887421 111233444444444443 45688899999999999874221 1 11223222
Q ss_pred -HHhhhhHHHHhccC----CChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHH
Q 000655 1193 -IHAMLPRLILHIYD----DDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRID 1267 (1370)
Q Consensus 1193 -v~~~LvpLLlHL~D----~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~ 1267 (1370)
|.-..|-.=.-|.+ .++.-.......|..|-.+++..+..+.+... .++..++.+.+ ..+-+ .+.
T Consensus 283 lv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~-~~~~~~~~~~l-~kl~~--------~l~ 352 (543)
T PF05536_consen 283 LVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIGYLVRSLE-EESLDLDPDTL-LKLRT--------SLS 352 (543)
T ss_pred HHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCCCHHHH-HHHHH--------HHH
Confidence 21122211112222 45555566778888888888886666655321 12233444333 23333 344
Q ss_pred HHHHHHHHhhcCCChh------HHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 000655 1268 SYMGSTIQAFEAPWPI------IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLK 1341 (1370)
Q Consensus 1268 ~~l~~~l~y~kS~~~~------IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k 1341 (1370)
.-+...+.|+++-|.+ .=-||+..+| .-|..||+. .|..+..-|.+|.+
T Consensus 353 e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~------------------------~WLaEe~~~-lr~~v~~Ll~~ll~ 407 (543)
T PF05536_consen 353 ETFSAVLEYLRDVWDESQKDPDFVLASVRVLG------------------------AWLAEETSA-LRKEVYGLLPFLLS 407 (543)
T ss_pred HHHHHHHHHHHHhhhccccchHHHHHHHHHHH------------------------HHHHhChHH-HHHHHHHHHHHHHH
Confidence 4566677888877772 1111222222 213445555 77777777777776
Q ss_pred Hccccccc
Q 000655 1342 SINSHSWR 1349 (1370)
Q Consensus 1342 ~~~~~~~~ 1349 (1370)
+.+.-...
T Consensus 408 ~~~~~~~~ 415 (543)
T PF05536_consen 408 LYRESFQE 415 (543)
T ss_pred HHhhhhhh
Confidence 66554433
No 217
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=31.37 E-value=4e+02 Score=27.33 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccC---CCh
Q 000655 1250 FVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS---ADA 1326 (1370)
Q Consensus 1250 f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D---pdp 1326 (1370)
...++|-.+- ..++....-+...-..++++.+.+.-.|...+..++++.+.....++....-...|.. +..+ .++
T Consensus 20 ~il~icd~I~-~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~-l~~~~~~~~~ 97 (133)
T cd03561 20 LNLELCDLIN-LKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK-IAKNSPKYDP 97 (133)
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH-HhCCCCCCCH
Confidence 3446666554 3456666666666679999999999999999999999998766666655454555888 5654 588
Q ss_pred hhHHHHHHHHHHHH
Q 000655 1327 IVRATCSSSLGWLL 1340 (1370)
Q Consensus 1327 ~VR~~Aa~aL~~l~ 1340 (1370)
.||.++.+.+....
T Consensus 98 ~Vk~kil~ll~~W~ 111 (133)
T cd03561 98 KVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888765544
No 218
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=31.17 E-value=7.4e+02 Score=29.48 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=52.3
Q ss_pred HHHHhhhccCCcchhhhhhHHHHHHHHHhhccc-CChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChH
Q 000655 1087 RGLCLRGLVQIPSIHIHQYATQVLSVILALLDD-LDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVK 1165 (1370)
Q Consensus 1087 R~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d-~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~ 1165 (1370)
|.+..+.|..++... ..+.++..+...+.. .+|.....++.++..=+..++ ..+.. .+...+..-|.|.++.
T Consensus 4 r~~~~~~L~~l~~~~---~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~-~~~~~---~~~~~~~kGl~~kk~~ 76 (339)
T PF12074_consen 4 RVLHASMLSSLPSSS---LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS-SELPK---KVVDAFKKGLKDKKPP 76 (339)
T ss_pred HHHHHHHHHhCCCcc---hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC-cCCCH---HHHHHHHHHhcCCCCc
Confidence 444444455444321 345556666666554 456667777777777776662 22222 2333344567777888
Q ss_pred HHHHHHHHHHHhhc
Q 000655 1166 MRRNAFAAFGALSN 1179 (1370)
Q Consensus 1166 vR~aAi~LfG~L~~ 1179 (1370)
+|..=+..+|+...
T Consensus 77 vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 77 VRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999876
No 219
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=29.80 E-value=3.1e+02 Score=30.89 Aligned_cols=149 Identities=13% Similarity=0.124 Sum_probs=83.3
Q ss_pred cccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcC-----CChHHHHHHHHHHHHhhccCCCcchHHHHH
Q 000655 1117 LDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVS-----MNVKMRRNAFAAFGALSNFGVGSQREAFLE 1191 (1370)
Q Consensus 1117 L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffed-----e~~~vR~aAi~LfG~L~~~~~~~~~~~~~e 1191 (1370)
|++....-+..|+..|..+..+-+.+.+ -+--++..-|-||..- .-+-+|..|....|+|.+.+ ..+..+-
T Consensus 109 l~~~~snRvcnaL~lLQclaShPetk~~-Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNd---sq~vi~f 184 (315)
T COG5209 109 LDERESNRVCNALNLLQCLASHPETKKV-FLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKND---SQYVIKF 184 (315)
T ss_pred cCchhhhHHHHHHHHHHHHhcCcchhee-eeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCC---CHHHHHH
Confidence 3334455777788888877766433221 1111222333455542 22568999999999999843 2333333
Q ss_pred HHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCCh-----------HHHHHHHHHHHHH
Q 000655 1192 QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDY-----------ETFVRDLTRQFVQ 1260 (1370)
Q Consensus 1192 Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~-----------~~f~~~i~k~L~~ 1260 (1370)
-.-.-+|||.+...|...+..+-- +.+....++ ++|.+++| ...++++..+++.
T Consensus 185 LltTeivPLcLrIme~gSElSktv--aifI~qkil-------------~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs 249 (315)
T COG5209 185 LLTTEIVPLCLRIMELGSELSKTV--AIFIFQKIL-------------GDDVGLQYICQTFERFYAVNLVLNSMVSQLVS 249 (315)
T ss_pred HHhhhHHHHHHHHHHhhhHHHHHH--HHHHHHHHh-------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344679999999999877665532 122222222 33344443 2344666777777
Q ss_pred hCcchHHHHHHHHHHhhc-CCChhHHH
Q 000655 1261 HFPSRIDSYMGSTIQAFE-APWPIIQA 1286 (1370)
Q Consensus 1261 ~~~~~~~~~l~~~l~y~k-S~~~~IR~ 1286 (1370)
..+.++-..+--| |++ |..+++|+
T Consensus 250 ~~~~RLlKh~iRc--YlRLsd~p~aR~ 274 (315)
T COG5209 250 LGSTRLLKHAIRC--YLRLSDKPHARA 274 (315)
T ss_pred ccchhHHHHHHHH--heeecCCHhHHH
Confidence 7776644433332 444 45566666
No 220
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.53 E-value=1.4e+03 Score=30.06 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=119.7
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcC--C------cch-hHHhHHhhhcCcCcCCChHHHHHHHHHHHHh
Q 000655 1107 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--A------VEP-ILLNLSVRLRNLQVSMNVKMRRNAFAAFGAL 1177 (1370)
Q Consensus 1107 ~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~--~------~~~-~l~~i~~~lrpffede~~~vR~aAi~LfG~L 1177 (1370)
..+++++..--.+.-...+.-|+.-|+++....+-. + -.| ..++++--|.-+=.-|++..|+.=++..-.+
T Consensus 208 ~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~i 287 (938)
T KOG1077|consen 208 TSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERI 287 (938)
T ss_pred HHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 344555544433322346677778888877654422 0 012 2233333333333456688999999998888
Q ss_pred hccCC------CcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHH
Q 000655 1178 SNFGV------GSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFV 1251 (1370)
Q Consensus 1178 ~~~~~------~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~ 1251 (1370)
..... .....--++-|+=..+.|..|+ |++++.-..|-..|+. |+.. + +-.+.|=.+
T Consensus 288 Lnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~---fls~--------r----E~NiRYLaL- 350 (938)
T KOG1077|consen 288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQ---FLSH--------R----ETNIRYLAL- 350 (938)
T ss_pred HhccccCccccchHhhhhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHH---Hhhc--------c----cccchhhhH-
Confidence 86322 1112223344666778999998 5555544444333333 2221 1 123334322
Q ss_pred HHHHHHHHHhC-cchHHHHHHHHHHhhc-CCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhH
Q 000655 1252 RDLTRQFVQHF-PSRIDSYMGSTIQAFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVR 1329 (1370)
Q Consensus 1252 ~~i~k~L~~~~-~~~~~~~l~~~l~y~k-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR 1329 (1370)
..+|+..+.++ .+.+..+..+.+.-+| .+...||+-|+-++=.+- ... ..++++..|.. -+.--|+.+|
T Consensus 351 Esm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mc-D~~-------Nak~IV~elLq-YL~tAd~sir 421 (938)
T KOG1077|consen 351 ESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC-DVS-------NAKQIVAELLQ-YLETADYSIR 421 (938)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh-chh-------hHHHHHHHHHH-HHhhcchHHH
Confidence 45677666555 5677777888888999 888999998885543222 111 22334443333 2344788888
Q ss_pred HHHHHHHHHH-HHHccccccc
Q 000655 1330 ATCSSSLGWL-LKSINSHSWR 1349 (1370)
Q Consensus 1330 ~~Aa~aL~~l-~k~~~~~~~~ 1349 (1370)
.--+--...| -||.-..+|-
T Consensus 422 eeivlKvAILaEKyAtDy~Wy 442 (938)
T KOG1077|consen 422 EEIVLKVAILAEKYATDYSWY 442 (938)
T ss_pred HHHHHHHHHHHHHhcCCcchh
Confidence 7433332333 3777777773
No 221
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=29.31 E-value=8.7e+02 Score=27.43 Aligned_cols=153 Identities=14% Similarity=0.105 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHhHhhhcC--chhHHHHHHHHhhhhc---cccc--Cc-chHHHHHHHHhhhc-CCchhhHHHHHHHHHHh
Q 000655 1007 EKWINLIGDVAGCVSIKR--PKEVQTICLILTKSIN---RQQR--FQ-REAAAAALSEFVRY-SGGFDSLLEQMVEALCR 1077 (1370)
Q Consensus 1007 e~~~~gV~lLAr~m~~~~--~~~~~~i~~~L~~~L~---s~~~--~~-Ri~a~af~sELl~~-~~~~~~l~~~~i~~L~~ 1077 (1370)
+.+.-+..++++-..+.. .+.+++++..+.-... ++.+ .+ .++.++-.-++... |.....++..+...|.
T Consensus 53 ~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~- 131 (234)
T PF12530_consen 53 ELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLN- 131 (234)
T ss_pred hHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHh-
Confidence 335566677777655432 1455555554222211 1111 11 23323333444432 2223334444444443
Q ss_pred hcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcC--CcchhHHhHHhhh
Q 000655 1078 HVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKD--AVEPILLNLSVRL 1155 (1370)
Q Consensus 1078 ~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~--~~~~~l~~i~~~l 1155 (1370)
++.++.++.+|+++|..+-..++-.+. ....++..-|+....+.+.+++..|-.++....-+ ....+-.++...+
T Consensus 132 --~~~~~~~~alale~l~~Lc~~~vvd~~-s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~l 208 (234)
T PF12530_consen 132 --QSCDEVAQALALEALAPLCEAEVVDFY-SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLL 208 (234)
T ss_pred --ccccHHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHH
Confidence 888999999999999999766544432 33466666665556778888888888877665433 2344444555555
Q ss_pred cCcCcCCC
Q 000655 1156 RNLQVSMN 1163 (1370)
Q Consensus 1156 rpffede~ 1163 (1370)
..+-...+
T Consensus 209 W~~~~~~~ 216 (234)
T PF12530_consen 209 WEYTSSSD 216 (234)
T ss_pred Hhhccccc
Confidence 55444444
No 222
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=29.22 E-value=3.2e+02 Score=33.67 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHh-hcCCCChhHHHHHhhhccCCcch---hhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccC
Q 000655 1066 SLLEQMVEALCR-HVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1139 (1370)
Q Consensus 1066 ~l~~~~i~~L~~-~l~D~~~~VR~lsLrGLgnl~~~---~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l 1139 (1370)
..++.+++.|.+ .-.|.|-.+...++-+|-|+... |.+-....+..|++.-+.-..++|+-.-+.+|+.+....
T Consensus 356 ~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q 433 (604)
T KOG4500|consen 356 DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ 433 (604)
T ss_pred HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch
Confidence 344556667766 77889999999999999998643 333334456778888888878899999999999888654
No 223
>PF14961 BROMI: Broad-minded protein
Probab=28.83 E-value=2.8e+02 Score=38.28 Aligned_cols=197 Identities=14% Similarity=0.152 Sum_probs=116.0
Q ss_pred HHHHhhcCCC-ChhHHHHHhhhccCCcchhh--hhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHH
Q 000655 1073 EALCRHVSDE-SPTVRGLCLRGLVQIPSIHI--HQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILL 1149 (1370)
Q Consensus 1073 ~~L~~~l~D~-~~~VR~lsLrGLgnl~~~~v--~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~ 1149 (1370)
+.+.+.+.-. --.||.-|++-|-+++.+++ ...-+.+-..+..+|.|.|+.+...+|+-..+.+...+-....-+..
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~trEiYt 243 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNMTREIYT 243 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhhhHHHHH
Confidence 4555555433 45799999999999887644 45567888899999999999999999999999999877665566777
Q ss_pred hHHhhhcCcCcCCChHHH---------------H-HHHHHHHHhhc----cCCCcchHHHHHHHH-hhhhHHHHhccCCC
Q 000655 1150 NLSVRLRNLQVSMNVKMR---------------R-NAFAAFGALSN----FGVGSQREAFLEQIH-AMLPRLILHIYDDD 1208 (1370)
Q Consensus 1150 ~i~~~lrpffede~~~vR---------------~-aAi~LfG~L~~----~~~~~~~~~~~eQv~-~~LvpLLlHL~D~~ 1208 (1370)
+++..+-..|-..+..+. . ..|+|.-+.-+ +..+ ..+.+.|.|. +.+.=|-.|... +
T Consensus 244 sL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiR-hpeK~mEeIVEsTLsLLs~~~~~-~ 321 (1296)
T PF14961_consen 244 SLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIR-HPEKYMEEIVESTLSLLSTHHDQ-N 321 (1296)
T ss_pred HHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhc-CcHHHHHHHHHHHHHHhcccccC-C
Confidence 888777555533222221 1 12223222211 1222 2233445554 444444444333 3
Q ss_pred hhHHHHHHHHHHhhchhhhh-hhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC
Q 000655 1209 LSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW 1281 (1370)
Q Consensus 1209 ~~V~~ack~tL~~~a~lL~w-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~ 1281 (1370)
.-+..++=..+ .++.- +.++.+-+. |-.+. ++ + ..+.+.|..+++..+..-+.||+.|+.+..
T Consensus 322 ~~~s~k~L~pi----~~lslLD~kA~WFkK-WmHg~-yS-R---~vvlr~L~kky~sli~~av~qCi~y~~~~~ 385 (1296)
T PF14961_consen 322 SLGSPKTLTPI----HFLSLLDPKAVWFKK-WMHGY-YS-R---TVVLRLLEKKYKSLIVNAVQQCIQYVESCE 385 (1296)
T ss_pred Ccccccccchh----hhhhhhccchHHHHH-HHhhc-ch-H---HHHHHHHccccchHHHHHHHHHHHHHHHhh
Confidence 22222221111 33333 343333222 44321 11 1 123556667888888899999999988654
No 224
>PF14750 INTS2: Integrator complex subunit 2
Probab=28.70 E-value=1.8e+03 Score=30.95 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=70.3
Q ss_pred ChHHHHHH-HHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhh----------------chh
Q 000655 1163 NVKMRRNA-FAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQV----------------APF 1225 (1370)
Q Consensus 1163 ~~~vR~aA-i~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~----------------a~l 1225 (1370)
..-++++| +++|..|-..++-+. ..+=...+..|+-+--++.|.-.+=-..+|+.+ ...
T Consensus 325 ~~~~~~~allrlyCaL~g~~g~k~----~~eE~~~lL~lit~~p~~~~~g~rf~~l~l~~Llacp~l~~~~~~e~~~v~W 400 (1049)
T PF14750_consen 325 EHIVQASALLRLYCALRGIAGLKF----TPEESEALLQLITSSPPPTPAGIRFVSLALCMLLACPSLISTPEQENSVVRW 400 (1049)
T ss_pred chHHHHHHHHHHHHHHHhhhcCCc----CHHHHHHHHHHHccCCCCCccchhHHHHHHHHHHHhHHhccCccHHHHHHHH
Confidence 33354444 588888877554332 222234555555555444444332222222221 122
Q ss_pred hhhh--hhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHh
Q 000655 1226 MEIG--VYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSS 1293 (1370)
Q Consensus 1226 L~w~--l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG 1293 (1370)
++|- -.+.|... .+...+|++++-=++.+|..+-.+.+..++..++++ | ..||.+....++
T Consensus 401 l~~Lik~~a~~~~~---~~~~~s~~E~LLLiaI~fhs~Q~~~I~~Lv~~tLgm-k---i~i~~~sl~rlk 463 (1049)
T PF14750_consen 401 LQWLIKEEAYFESG---SGVSASFGEMLLLIAIHFHSNQLSAIAELVCSTLGM-K---IPIRPNSLSRLK 463 (1049)
T ss_pred HHHHHHhhhhhccc---ccCCccHHHHHHHHHHHHHhccHHHHHHHHHhhcCC-e---eeechHHHHHHH
Confidence 3441 12344432 235668999999999999999999999999999984 3 346766665555
No 225
>PRK14707 hypothetical protein; Provisional
Probab=28.48 E-value=2.3e+03 Score=32.14 Aligned_cols=376 Identities=12% Similarity=0.013 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCCCCCChHHHHHHHHHHHH-------HhhcchHHHH
Q 000655 923 QAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEPLRAILTSFQAFC-------ECVGDLEMRK 995 (1370)
Q Consensus 923 laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~~~~~P~~~aleAlk~ll-------~~~g~~~~~~ 995 (1370)
-+|+.+|-+-+... +..+ ..+=||-+...|.-+|-+= .-..|+.+..+|=.-+ ....-+++.+
T Consensus 854 r~AA~aLA~RLa~e-~~LR---~aL~~QevantLNALSKWP------d~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN 923 (2710)
T PRK14707 854 AAAAGAMAERLADE-PELR---HTLTAHGVVIVLNALSKWP------NVPVCAAAASALAERLADEPELRKALSAHRVAT 923 (2710)
T ss_pred HHHHHHHHHHHhcC-hhhh---hccchHHHHHHHhhhccCC------CcHHHHHHHHHHHHHHhcCHHHHhhccHHHHHH
Confidence 46666776666543 1222 2223443333333332211 1234666666654322 3334455566
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhHhhhc-------CchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhH-
Q 000655 996 ILARDGEQNDKEKWINLIGDVAGCVSIK-------RPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSL- 1067 (1370)
Q Consensus 996 ~L~~~g~W~~~e~~~~gV~lLAr~m~~~-------~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l- 1067 (1370)
.|.--..|-+.+.--.++..||..++.. +++++...++-|.+-- ..+..+.+|.+.-.+|.+.+.....+
T Consensus 924 ~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWP--d~~~c~~AA~aLA~rL~~~~~LR~al~ 1001 (2710)
T PRK14707 924 ALNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWP--DVPAGGEVVDALAERLVDEPALRNALD 1001 (2710)
T ss_pred HHhhhccCCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCC--CchHHHHHHHHHHHHHhccHHHHhhcc
Confidence 6666667998788888899999988642 4456777777777662 23444666666666666554332222
Q ss_pred ---HHHHHHHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhHHHHHHHHHhhccc-CChhHHHHHHHHHHHH------
Q 000655 1068 ---LEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVLSVILALLDD-LDESVQLTAVSCLLTI------ 1135 (1370)
Q Consensus 1068 ---~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~~~~~lL~all~~L~d-~d~~V~leAm~~L~~l------ 1135 (1370)
+-.++|.|.+|-.-+ .=|..+.+=-+.++.+ .-+..-.+-+...+++|.. .+++.-..|...|..-
T Consensus 1002 aQ~vAN~LNALSKWPd~~--~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~ 1079 (2710)
T PRK14707 1002 PIGMANALNALSKWLQMP--VCAATVEALAARLSNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLV 1079 (2710)
T ss_pred hHHHHHHHhhhhcCCCch--HHHHHHHHHHHHhccCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHH
Confidence 234677777776332 3333333322223322 1223334556666777766 3444444444444332
Q ss_pred -hccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHH-HHhhhhHHHHhccCCChhHHH
Q 000655 1136 -LKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ-IHAMLPRLILHIYDDDLSVRQ 1213 (1370)
Q Consensus 1136 -L~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ-v~~~LvpLLlHL~D~~~~V~~ 1213 (1370)
...++.+++.+.+-.++. . -+.+.-|.++..+-+.|+. .+.....|.-| |-+.+.-| --.-++ .
T Consensus 1080 Lr~Al~aQ~vAN~LNaLSK--W----P~~~~Cr~Aa~~LA~rL~~--~~~l~~~fd~q~vA~~LNAL-SKWp~~-----~ 1145 (2710)
T PRK14707 1080 LRNALDSQGFGNALNALSK--W----PDSPVCAAAASALAKRLTD--DAGLRHVFDPINVSQALNAL-SKWPGT-----Q 1145 (2710)
T ss_pred HHHhhchHHHHHHHHHHhc--C----CCcHHHHHHHHHHHHHhcc--ccchhccCCHHHHHHHHHHH-hcCCCc-----h
Confidence 223555555554443332 1 2557788888888888875 22233444433 22222222 222222 2
Q ss_pred HHHHHHHhhchhhhh--hhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH-hhcCCChh-HHHHHH
Q 000655 1214 ACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ-AFEAPWPI-IQANAI 1289 (1370)
Q Consensus 1214 ack~tL~~~a~lL~w--~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~-y~kS~~~~-IR~aA~ 1289 (1370)
.|+.+-..+|.-|-+ .+..-+. |. -+.++++ +.|=|..+ -|+++.
T Consensus 1146 ~cr~Aa~~LA~RL~~d~~Lr~a~~---------------------------~Q----~vAn~LNaLSKWp~~~ac~~A~~ 1194 (2710)
T PRK14707 1146 ACESAIDVLAATLANAPGLRNALS---------------------------AQ----GVAIALNALSKCLARPVCRSAFV 1194 (2710)
T ss_pred HHHHHHHHHHHHhccchhhhhhcC---------------------------HH----HHHHHHHHhhcCcCcHHHHHHHH
Confidence 455544444433222 2221111 11 1122222 44555544 556555
Q ss_pred HHHhhhhc-cCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHcccccccccccccccc
Q 000655 1290 YFSSSILC-LCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSINSHSWRSTRLERVES 1358 (1370)
Q Consensus 1290 ~fiG~l~~-~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~~~~~~~~~~~~~~~~ 1358 (1370)
.+++.++. ..+-......+.-++-+++-+ +..+.+...-..++-+...|++-..+.--+-.+|+.+|.
T Consensus 1195 ~La~rlG~a~~P~r~F~m~~lAqiaNa~sR-l~~~~~ed~~~~~~~a~~~L~~LA~HL~l~~erfe~A~~ 1263 (2710)
T PRK14707 1195 LLAERAGSAELPWRQFEMRGIAVVANAMSR-LSPLDEEDDEQFRTLAVAKLQAMAGHLDLHRELFASASV 1263 (2710)
T ss_pred HHHHhhcCCCCCchhcCHHHHHHHHHHHHH-hhhcccchhHHHHHHHHHHHHHHHHHHhhcHHHHhhccc
Confidence 56666654 233344445567889999999 665544444444466677899888877776666666653
No 226
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=28.23 E-value=74 Score=24.70 Aligned_cols=28 Identities=29% Similarity=0.145 Sum_probs=23.5
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1312 VFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1312 l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
.+..|.. |++++++.++..|..||+.+.
T Consensus 13 ~i~~L~~-ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVE-LLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHH-HHcCCCHHHHHHHHHHHHHHc
Confidence 4666888 677899999999999998874
No 227
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=27.68 E-value=9.3e+02 Score=27.21 Aligned_cols=193 Identities=14% Similarity=0.088 Sum_probs=109.0
Q ss_pred ChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHh----hcC
Q 000655 1005 DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCR----HVS 1080 (1370)
Q Consensus 1005 ~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~----~l~ 1080 (1370)
+++....-+..|+.-.+..+ ...+.+++.+.+..+.+...-+-++.-.++++.+.....-..++.++..+.. ...
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~ 92 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFS 92 (234)
T ss_pred ChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccC
Confidence 44555555666665544444 6788888888888777666666788888888777543321223333322111 122
Q ss_pred CCChhHHH-----HHhhhccCCcchhhhhhHHHHHHHHHhhc-ccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhh
Q 000655 1081 DESPTVRG-----LCLRGLVQIPSIHIHQYATQVLSVILALL-DDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVR 1154 (1370)
Q Consensus 1081 D~~~~VR~-----lsLrGLgnl~~~~v~~~~~~lL~all~~L-~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~ 1154 (1370)
+.+...+. .+++-+-..-+ .+...+++.+...| ++.++.+..-|+.+|+-+.+. +--++.+...-+..+
T Consensus 93 ~~~~~~~~~i~~a~s~~~ic~~~p----~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~-~vvd~~s~w~vl~~~ 167 (234)
T PF12530_consen 93 SKDEFWECLISIAASIRDICCSRP----DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA-EVVDFYSAWKVLQKK 167 (234)
T ss_pred CCcchHHHHHHHHHHHHHHHHhCh----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHh
Confidence 22222221 12221111111 26677888888888 777888999999999988843 222333444344333
Q ss_pred hcCcCcCCChHHHHHHHHHHHHhhccC-CCcchHHHHHHHHhhhhHHHHhccC
Q 000655 1155 LRNLQVSMNVKMRRNAFAAFGALSNFG-VGSQREAFLEQIHAMLPRLILHIYD 1206 (1370)
Q Consensus 1155 lrpffede~~~vR~aAi~LfG~L~~~~-~~~~~~~~~eQv~~~LvpLLlHL~D 1206 (1370)
+ =.+.++.|=.+--++|+-+.... +....+.+..+++..+=-..-|.++
T Consensus 168 l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 168 L---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred c---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 3 23445555555556777665532 3344566777777776666666554
No 228
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=27.23 E-value=4e+02 Score=27.92 Aligned_cols=87 Identities=9% Similarity=0.086 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccC-CChhhH
Q 000655 1251 VRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQS-ADAIVR 1329 (1370)
Q Consensus 1251 ~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~D-pdp~VR 1329 (1370)
.-++|-.+-.. ++....-+.....-++++.+++..-|..++..++++.+.....++......+.|.. +..+ .++.|+
T Consensus 21 il~icD~I~~~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~k-l~~~~~~~~Vk 98 (144)
T cd03568 21 ILDVCDKVKSD-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKK-LINDRVHPTVK 98 (144)
T ss_pred HHHHHHHHhcC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH-HhcccCCHHHH
Confidence 34777766655 66666777777778889999999999999999999999777777878888899999 7777 889999
Q ss_pred HHHHHHHHHH
Q 000655 1330 ATCSSSLGWL 1339 (1370)
Q Consensus 1330 ~~Aa~aL~~l 1339 (1370)
.++.+-+...
T Consensus 99 ~kil~li~~W 108 (144)
T cd03568 99 EKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHH
Confidence 8887765543
No 229
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=26.79 E-value=6e+02 Score=27.68 Aligned_cols=65 Identities=25% Similarity=0.176 Sum_probs=51.2
Q ss_pred HHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhcc
Q 000655 1071 MVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKS 1138 (1370)
Q Consensus 1071 ~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~ 1138 (1370)
+...+.+|.+++|+-+|+.++-++-..... .+.+.++..+...+.|.+.-|.+..-..|+.+...
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999888654433 55678888888888887777888887888877654
No 230
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=26.59 E-value=5.4e+02 Score=34.80 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=98.5
Q ss_pred CCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhc-hhhhhhhhhhhccccC
Q 000655 1161 SMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVA-PFMEIGVYGIFNSHCF 1239 (1370)
Q Consensus 1161 de~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a-~lL~w~l~~lf~~~~~ 1239 (1370)
|+.+.||..|...|.++.....+...+. |+.. ++---.|+--.|+++.-.++-+-. ++-.-+ -.+. |
T Consensus 483 DkaaavR~~al~s~tk~l~l~~~~~~~s----Il~~---~inS~~d~~fs~ves~~~~~~~~~~~~s~~~----~tt~-~ 550 (1529)
T KOG0413|consen 483 DKAAAVRLHALNSLTKILQLQSHREAFS----ILCA---TINSEMDEKFSAVESLEDLNVSGKAPSSKTK----KTTD-L 550 (1529)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccchHH----HHHH---hcCCccccchhHHHhchhhhhcccCcccccc----cchh-h
Confidence 6778999999999999998655543332 2222 222334666677776655554321 111110 0011 1
Q ss_pred CcCCCCChHHHHHHHHHHHHHhCcchHHHHHHHHHH-hhc-CCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHH
Q 000655 1240 NSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQ-AFE-APWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLV 1317 (1370)
Q Consensus 1240 ~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~~l~-y~k-S~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~ 1317 (1370)
-.+-++..-|+---++.+...++...+..-+- ... +.-.++|.+|...+-....+-+..-. .|.+.--|+
T Consensus 551 ----l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~----fe~~L~iLq 622 (1529)
T KOG0413|consen 551 ----LLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASK----FEVVLSILQ 622 (1529)
T ss_pred ----cCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhc----chhHHHHHH
Confidence 11123444455555666666666666555444 444 55677999998887777666653332 256677789
Q ss_pred HHhccCCChhhHHHHHHHHHHHH
Q 000655 1318 VKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1318 ~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
+ |=+||-..||..++++|+.+.
T Consensus 623 ~-lCrd~~vsvrk~~~~Sltel~ 644 (1529)
T KOG0413|consen 623 M-LCRDRMVSVRKTGADSLTELM 644 (1529)
T ss_pred H-HhcCcchHHHHHHHHHHHHHH
Confidence 8 889999999999999999876
No 231
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=26.59 E-value=2.4e+02 Score=34.58 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=48.7
Q ss_pred CCC----ChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHH-HHHHHhhhc-CCchhhHHHH-HHHH
Q 000655 1002 EQN----DKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAA-AALSEFVRY-SGGFDSLLEQ-MVEA 1074 (1370)
Q Consensus 1002 ~W~----~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~-af~sELl~~-~~~~~~l~~~-~i~~ 1074 (1370)
.|. ++..|.+-+..+-. -.-+|+..|+.+|++.+++.-+..+ -=++|++++ |.+...+.+. .-..
T Consensus 342 ~WSP~Hk~e~FW~eNa~rlne--------nnyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~ 413 (442)
T KOG2759|consen 342 EWSPVHKSEKFWRENADRLNE--------NNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKER 413 (442)
T ss_pred CCCccccccchHHHhHHHHhh--------ccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHH
Confidence 687 66777777654322 3457888888999988877665444 447899986 4443322221 2223
Q ss_pred HHhhcCCCChhHHHHHhh
Q 000655 1075 LCRHVSDESPTVRGLCLR 1092 (1370)
Q Consensus 1075 L~~~l~D~~~~VR~lsLr 1092 (1370)
+.+-++++||.||-=||.
T Consensus 414 vM~Llnh~d~~Vry~ALl 431 (442)
T KOG2759|consen 414 VMNLLNHEDPEVRYHALL 431 (442)
T ss_pred HHHHhcCCCchHHHHHHH
Confidence 333345555555554444
No 232
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=26.29 E-value=2e+03 Score=30.68 Aligned_cols=295 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHHHhhhccCCcch----hhhh
Q 000655 1029 QTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI----HIHQ 1104 (1370)
Q Consensus 1029 ~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~----~v~~ 1104 (1370)
+.++.+++|+|++.....|-+++..+.. ....+.+.++..|.--+.+-+...+.. .++.... .++-
T Consensus 195 R~LFk~ivPlLks~~~~~r~AaVlaLG~------~n~~v~~~LleeL~~~i~~~~~e~e~r----~~~k~rr~Rrd~LR~ 264 (1120)
T PF14228_consen 195 RELFKLIVPLLKSESSSFRDAAVLALGS------INLNVYRTLLEELQSYIEECNSEAESR----PKWKRRRRRRDRLRT 264 (1120)
T ss_pred HHHHHHHhhhhccCcHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHHHhcc----cccccchhhhhhHHH
Q ss_pred hHHHHHHHHHhhccc---CChhHHH----HHHHHHHHHhc---cCCcCCcchhHHhHHhhhcCcCcC--------CChHH
Q 000655 1105 YATQVLSVILALLDD---LDESVQL----TAVSCLLTILK---SSSKDAVEPILLNLSVRLRNLQVS--------MNVKM 1166 (1370)
Q Consensus 1105 ~~~~lL~all~~L~d---~d~~V~l----eAm~~L~~lL~---~l~~~~~~~~l~~i~~~lrpffed--------e~~~v 1166 (1370)
..-.++.-+.+.+.+ .++.+.. +=+.....-+. .-....+..+....|--++.++.. -..+.
T Consensus 265 ev~hVl~llAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~~se~fpfe~ 344 (1120)
T PF14228_consen 265 EVTHVLRLLAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKAKSEWFPFEA 344 (1120)
T ss_pred HHHHHHHHHHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhchhhcCCHHH
Q ss_pred HHHHHHHHHHhhccCC----CcchHHHHHHHHhhhhHHHHhccCCChhHHHHH-----HHHHHhhc--------------
Q 000655 1167 RRNAFAAFGALSNFGV----GSQREAFLEQIHAMLPRLILHIYDDDLSVRQAC-----RNTLKQVA-------------- 1223 (1370)
Q Consensus 1167 R~aAi~LfG~L~~~~~----~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ac-----k~tL~~~a-------------- 1223 (1370)
|.++|.+|.+=+.++. -.....++.++-.......-..+|+.....-+. +..|...|
T Consensus 345 RkslF~l~~eWCGy~~~~~~~~~~s~~rre~~r~~~~~~~r~kd~~~~~~~~~~Ie~~~~~L~~aAl~AMAaLc~GPif~ 424 (1120)
T PF14228_consen 345 RKSLFNLFEEWCGYSPSQWGQDGRSDYRREVERYKSSQLQREKDSRERATAEMEIEEQKRNLRTAALSAMAALCGGPIFD 424 (1120)
T ss_pred HHHHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q ss_pred --------hhhhh--hhhhh------hccccCCcCCCCCh-----------------------HHHHHHHHHHHHHhCcc
Q 000655 1224 --------PFMEI--GVYGI------FNSHCFNSDHRSDY-----------------------ETFVRDLTRQFVQHFPS 1264 (1370)
Q Consensus 1224 --------~lL~w--~l~~l------f~~~~~~~~~~l~~-----------------------~~f~~~i~k~L~~~~~~ 1264 (1370)
..|.| .+-.. +.-.+... +.+.| ...-+.-.+.|..++++
T Consensus 425 ~~~~~~~grmlsWId~if~s~s~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgr~AL~nLL~~N~d 503 (1120)
T PF14228_consen 425 DNASKPSGRMLSWIDSIFNSPSDRMPIGYSPLDP-RTMSYSKHAGEGPRGATGRDKQKSSHARHSLGRRALKNLLEHNPD 503 (1120)
T ss_pred cchhcccchHHHHHHHHHcCCCCCCcCCCCCCCc-cCcccccccCcccccccchhhhccchHHHHHHHHHHHHHHHhhHH
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHH
Q 000655 1265 RIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKS 1342 (1370)
Q Consensus 1265 ~~~~~l~~~l~y~kS~~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~ 1342 (1370)
.+.+.+.+| |..+ ++.|..+-.-+..-+-.......+...+++--.- ..-||+..||..|.+=|..+-+.
T Consensus 504 Ll~~~IdrC--Yss~-----~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lf-klg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 504 LLDWVIDRC--YSSS-----PRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLF-KLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHh--cCCC-----hhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHH-hhcCCcHHHHHHHHHHHHHHHHH
No 233
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=26.26 E-value=6e+02 Score=26.66 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=51.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchh--hHHHHHHHHHhhcCcHHHHH
Q 000655 747 RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVS--RTTQSLLSAAVHITDKHLRL 824 (1370)
Q Consensus 747 ~i~~~i~~~L~~~el~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~--~I~~~I~~~L~~i~~~~~r~ 824 (1370)
.||..|... ...=.+-+..+...|..++++...-|-.+|..+++..|..+..+ |+ +.++.+..-+..-+...+++
T Consensus 23 ~icD~I~~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e-vask~Fl~eL~kl~~~~~~~~Vk~ 99 (144)
T cd03568 23 DVCDKVKSD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQE-VASRDFTQELKKLINDRVHPTVKE 99 (144)
T ss_pred HHHHHHhcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HhhHHHHHHHHHHhcccCCHHHHH
Confidence 455555432 23334556666777788888888899999999999999888422 43 11222222111114555666
Q ss_pred HHHHHHHHHhhcc
Q 000655 825 ETLGAISCLAENT 837 (1370)
Q Consensus 825 ~~l~ai~~La~~h 837 (1370)
.++..|...+...
T Consensus 100 kil~li~~W~~~f 112 (144)
T cd03568 100 KLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 6665555555443
No 234
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=25.30 E-value=8.2e+02 Score=29.46 Aligned_cols=199 Identities=15% Similarity=0.147 Sum_probs=102.5
Q ss_pred CCCChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhcccccCcchHHHHHHHHhhhcCCchhh------HH---HHHH
Q 000655 1002 EQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDS------LL---EQMV 1072 (1370)
Q Consensus 1002 ~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~~~~------l~---~~~i 1072 (1370)
|+.+.+.-.+.|..||..+... .++..|+..|..-+=.-|--++.+|+-+++...+... +. ..++
T Consensus 54 G~~e~ep~~e~v~qLa~Ei~~~------dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil 127 (335)
T PF08569_consen 54 GDGEPEPNPEQVAQLAQEIYRS------DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEIL 127 (335)
T ss_dssp S-SS----HHHHHHHHHHHHHH------THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHh------CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHH
Confidence 4444444445577778877543 3444444455554434555666677777775433222 11 1245
Q ss_pred HHHHhhcCCCChhHHHHHhhhccCCcch--hhhhhHHHHH-----HHHHhhcccCChhHHHHHHHHHHHHhccCCcCCcc
Q 000655 1073 EALCRHVSDESPTVRGLCLRGLVQIPSI--HIHQYATQVL-----SVILALLDDLDESVQLTAVSCLLTILKSSSKDAVE 1145 (1370)
Q Consensus 1073 ~~L~~~l~D~~~~VR~lsLrGLgnl~~~--~v~~~~~~lL-----~all~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~ 1145 (1370)
..|..+-.+|+-..= -|.|..+ +.......+| .-+..-.+..+=+|.-+|+.++..++..= ..-++
T Consensus 128 ~~L~~gy~~~dial~------~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a 200 (335)
T PF08569_consen 128 DILLRGYENPDIALN------CGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVA 200 (335)
T ss_dssp HHHHHGGGSTTTHHH------HHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHH
T ss_pred HHHHHHhcCccccch------HHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHH
Confidence 555555555443211 0111111 1111111111 11233333344579999999999998752 12222
Q ss_pred hhHH----hHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHH--hhhhHHHHhccCCChhHHHHH
Q 000655 1146 PILL----NLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIH--AMLPRLILHIYDDDLSVRQAC 1215 (1370)
Q Consensus 1146 ~~l~----~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~--~~LvpLLlHL~D~~~~V~~ac 1215 (1370)
.++. ......-.+.+.+|.-.|.-|+.|+|++.- .......|..=|- .+|--++.+|+|+...|.-.+
T Consensus 201 ~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~elll--dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eA 274 (335)
T PF08569_consen 201 EFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLL--DRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEA 274 (335)
T ss_dssp HHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHH--SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHH--chhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHH
Confidence 2222 222344567788999999999999999985 2233333332222 577888899999999887766
No 235
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=25.14 E-value=1.4e+03 Score=28.55 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCc-HHHHHHHHH---HHHHHhhccCchhHHHHHHhhhcccch
Q 000655 780 AEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITD-KHLRLETLG---AISCLAENTNSKIVFNEVLATAGKDIV 855 (1370)
Q Consensus 780 ~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i~~-~~~r~~~l~---ai~~La~~h~~~vV~~~Ll~~~~~~~~ 855 (1370)
....-+++..++|....-+.|.+|..+++.++.- +..+. +..-...+. +|..-+.=+ .+-. ..++.++.+-
T Consensus 151 l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~i-C~~Ts~~~di~~~L~vldaii~y~~iP-~~sl-~~~i~vLCsi-- 225 (464)
T PF11864_consen 151 LSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTI-CKSTSSEDDIEACLSVLDAIITYGDIP-SESL-SPCIEVLCSI-- 225 (464)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHcCcCC-hHHH-HHHHHHHhhH--
Confidence 3445567778888888888766687777777763 43332 222233333 333333322 2211 2222222111
Q ss_pred hhhhccccCCCCchh-HHHHhhc--CcccHHHHHHHHHHHHccCCCccCCCccCCCCCCCCCCCccchHHHHHHHHHHHH
Q 000655 856 TKDISRLRGGWPMQD-AFHAFSQ--HAVLSFLFLEHLISALNQTPFVKGDMEKGDYSSHSADTWIDDDILQAAILALTAF 932 (1370)
Q Consensus 856 ~~~~~~L~~~lP~d~-~W~ala~--d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~El 932 (1370)
-....+.. .|+++.+ .......++..|.+.|.+..+... ...-.--.|+..+..+
T Consensus 226 -------~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~---------------~~~~~lRGAv~~l~~l 283 (464)
T PF11864_consen 226 -------VNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNK---------------RDINVLRGAVFFLRML 283 (464)
T ss_pred -------hcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCcccc---------------ccHHHHhhHHHHHHHH
Confidence 00112222 7998876 556778888999998832221110 0001123788888888
Q ss_pred HhcCC
Q 000655 933 FRGGG 937 (1370)
Q Consensus 933 l~~~~ 937 (1370)
+.+.+
T Consensus 284 l~~~~ 288 (464)
T PF11864_consen 284 LWGSG 288 (464)
T ss_pred Hhccc
Confidence 88763
No 236
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=25.00 E-value=1.2e+03 Score=27.73 Aligned_cols=206 Identities=17% Similarity=0.212 Sum_probs=104.8
Q ss_pred chHHHHHHHHhhhcCCchhhHHHHHHHHHHhhcCCCChhHHHH--HhhhccCCcchhhhhhHHHHHHHHHhhcccCCh--
Q 000655 1047 REAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGL--CLRGLVQIPSIHIHQYATQVLSVILALLDDLDE-- 1122 (1370)
Q Consensus 1047 Ri~a~af~sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~l--sLrGLgnl~~~~v~~~~~~lL~all~~L~d~d~-- 1122 (1370)
|.-++.-+++++-+......+++.++..=.+...|++...|.= +-|.+..-.......|...+|..++.-+.+.+.
T Consensus 34 ~~~~a~~Lvrlf~~~~~~~~fl~~li~~Ev~~t~~~~tLFRgNSlaTK~m~~y~k~~G~~YL~~tL~pvI~~i~~~~~~~ 113 (313)
T cd05394 34 KYDAVLPLVRLLLHHQKLVPFVAAVAELDLKDTQEANTIFRGNSLATRCLDEMMKIVGKHYLKVTLKPVLDEICDSPKPC 113 (313)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCHhhHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 4444445555555554444556666666667778888888752 233333333224456777777777766644221
Q ss_pred ----------hHH---HHHH-----HHHHHHhccCCcCCcchhHHhHHhhhcC----cCcCCChHHHHHHHHHHHHhhcc
Q 000655 1123 ----------SVQ---LTAV-----SCLLTILKSSSKDAVEPILLNLSVRLRN----LQVSMNVKMRRNAFAAFGALSNF 1180 (1370)
Q Consensus 1123 ----------~V~---leAm-----~~L~~lL~~l~~~~~~~~l~~i~~~lrp----ffede~~~vR~aAi~LfG~L~~~ 1180 (1370)
+.+ .+.+ ..+..|....+. .-..+..|+..||. -|.+. .+++..|+.-|==|==+
T Consensus 114 EvDP~Kv~~g~~le~n~~~L~~~~~~~~~~I~~S~~~--~P~~lr~i~~~lr~~v~~rFp~~-~~~~~~aVsgFlFLRF~ 190 (313)
T cd05394 114 EIDPIKLKEGDNVENNKENLRYYVDKVFFCIVKSSMS--CPTVMCDIFYSLRHMAVKRFPND-PHVQYSAVSSFVFLRFF 190 (313)
T ss_pred eeChhhcCCcchHHHHHHHHHHHHHHHHHHHHhCccc--CcHHHHHHHHHHHHHHHHHCCCh-HhhHHHHHHHHHHHHHh
Confidence 011 1111 122233333221 12234444444432 33332 44454444332111001
Q ss_pred CCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh-hhhhhhccccCCcCCCCChHHHHHHHHHHHH
Q 000655 1181 GVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFV 1259 (1370)
Q Consensus 1181 ~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w-~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~ 1259 (1370)
+. ..+-|=+++|.++.|+ ..++++|.-+|..+.. .=...|.+..- .-.-+.|+..+.+.+.
T Consensus 191 cP------------AIlSP~lf~L~~~~p~--~~~~RtLtLIaKvLQnLAN~~~~~~~~~----~~~KE~~M~~~~~~~~ 252 (313)
T cd05394 191 AV------------AVVSPHTFHLRPHHPD--AQTSRTLTLISKTIQTLGSWGSLTKSKP----SSFKETFMCEFFKMFQ 252 (313)
T ss_pred hh------------hhcCcccccccCCCCC--hhhhHHHHHHHHHHHHHhCccccccCCc----cccchHHHHHHhHHHH
Confidence 11 2344667888888776 3678899999887776 32333332100 0112677777777776
Q ss_pred HhC-cchHHHHHHHH
Q 000655 1260 QHF-PSRIDSYMGST 1273 (1370)
Q Consensus 1260 ~~~-~~~~~~~l~~~ 1273 (1370)
++. .+.+..|+.+.
T Consensus 253 ~~~~~~~v~~FLd~I 267 (313)
T cd05394 253 EETYTKVVKKFLDEI 267 (313)
T ss_pred HHHHHHHHHHHHHHH
Confidence 643 46777777774
No 237
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=24.95 E-value=1.4e+03 Score=28.34 Aligned_cols=87 Identities=16% Similarity=0.062 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHhhcCCC-hhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCCh
Q 000655 1248 ETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPW-PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADA 1326 (1370)
Q Consensus 1248 ~~f~~~i~k~L~~~~~~~~~~~l~~~l~y~kS~~-~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp 1326 (1370)
+.|+++=...|-+++ ...+...+.+++++. |.+=+-|+.=||..+.++|.-.. -++.-....++++ |..-+||
T Consensus 350 e~FW~eNa~rlnenn----yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~-Llnh~d~ 423 (442)
T KOG2759|consen 350 EKFWRENADRLNENN----YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMN-LLNHEDP 423 (442)
T ss_pred cchHHHhHHHHhhcc----HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHH-HhcCCCc
Confidence 455555555555443 345666777888887 66778888889999999993321 2333334556777 7889999
Q ss_pred hhHHHHHHHHHHHH
Q 000655 1327 IVRATCSSSLGWLL 1340 (1370)
Q Consensus 1327 ~VR~~Aa~aL~~l~ 1340 (1370)
.||--|-.|...+-
T Consensus 424 ~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 424 EVRYHALLAVQKLM 437 (442)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999977664
No 238
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=24.61 E-value=1.6e+03 Score=28.94 Aligned_cols=390 Identities=14% Similarity=0.154 Sum_probs=212.0
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc----
Q 000655 761 LVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAEN---- 836 (1370)
Q Consensus 761 l~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i~~~~~r~~~l~ai~~La~~---- 836 (1370)
+..|+.+ .+.+++-....+|...+-.++..+-....-+=|+..+-+|...|. -..-.++..+-.++..+|.|
T Consensus 367 Vl~FvEq---ni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-D~~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 367 VLGFVEQ---NIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-DSCLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred HHHHHHH---hccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-cceeehhhHHHHHHHHHHHHHHHh
Confidence 3444443 456666667788887777777654433222227777777777665 44456777777778877765
Q ss_pred -----cCchhHHHHHHhhhcccchhhhhccccCCCCchh---HHHHhhc-------C---cccHHHHHHHHHHHHccCCC
Q 000655 837 -----TNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQD---AFHAFSQ-------H---AVLSFLFLEHLISALNQTPF 898 (1370)
Q Consensus 837 -----h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~---~W~ala~-------d---~~l~~~vL~~LL~~L~~~p~ 898 (1370)
|...+| +..+ -| + .+ .|.-. .|+...- . ++...++..-++.-|-+.--
T Consensus 443 i~p~~Hl~~~v-sa~l--iG---l------~D--~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~ 508 (858)
T COG5215 443 ISPCGHLVLEV-SASL--IG---L------MD--CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTE 508 (858)
T ss_pred cCccccccHHH-HHHH--hh---h------hc--cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence 444444 3332 00 0 01 22211 6876532 1 22222222222222222110
Q ss_pred ccCCCccCCCCCCCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCCCC-----CC--C
Q 000655 899 VKGDMEKGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASS-----GQ--H 971 (1370)
Q Consensus 899 ~~e~~~~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~~~-----~~--~ 971 (1370)
... + .. -.-.++..||+++..- +-++|....+.+..-.+.++..|+.+... +. +
T Consensus 509 ~~~-----N---------e~-n~R~s~fsaLgtli~~----~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~ 569 (858)
T COG5215 509 LAL-----N---------ES-NLRVSLFSALGTLILI----CPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLV 569 (858)
T ss_pred hhc-----c---------ch-hHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 000 0 00 1124678888888763 34778777777777778888877765321 00 0
Q ss_pred Ch-HHHHHHHHHHHHHhhcc--hHHH--------HHHHhcCCCCChhhHHHHHHHHHhHhhhcCchhHHHHHHHHhhhhc
Q 000655 972 EP-LRAILTSFQAFCECVGD--LEMR--------KILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSIN 1040 (1370)
Q Consensus 972 ~P-~~~aleAlk~ll~~~g~--~~~~--------~~L~~~g~W~~~e~~~~gV~lLAr~m~~~~~~~~~~i~~~L~~~L~ 1040 (1370)
.- .|-.+..+-+...+.+. +.+. ..|+....-.-.++.+.+|+.++.++-+.-..+.+.+.-|+.+.|+
T Consensus 570 ~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln 649 (858)
T COG5215 570 EELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN 649 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 00 12223333333444444 2222 2233221111345555667777777666666788888888888887
Q ss_pred ccccCcchHHHHHHHHhhhcCCc-hhhHHHHHHHHHHhhcCCCC--hhHHHHHhhhccCCcchhhhhhHHHHHHHHHhhc
Q 000655 1041 RQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDES--PTVRGLCLRGLVQIPSIHIHQYATQVLSVILALL 1117 (1370)
Q Consensus 1041 s~~~~~Ri~a~af~sELl~~~~~-~~~l~~~~i~~L~~~l~D~~--~~VR~lsLrGLgnl~~~~v~~~~~~lL~all~~L 1117 (1370)
-.+...-.+|++|...+-|.-+. -...-+.+++.|.+-++.|+ ..++-..|--.|.|+..-.+.+ ..-|+.++..+
T Consensus 650 ~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F-~~YL~~im~L~ 728 (858)
T COG5215 650 CTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANF-ESYLDMIMMLF 728 (858)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence 77777788999999999887543 33445778999999888763 3455556666777765322222 22245555444
Q ss_pred ccC------Ch---------h---HHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCC--hHHHHHHHHHHHHh
Q 000655 1118 DDL------DE---------S---VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN--VKMRRNAFAAFGAL 1177 (1370)
Q Consensus 1118 ~d~------d~---------~---V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~--~~vR~aAi~LfG~L 1177 (1370)
... ++ . .+.+|.-|++.-++. ..+.+-|...+|...|---=+|.+ ...-.+|..|.|+|
T Consensus 729 qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~n-r~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDl 807 (858)
T COG5215 729 QQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKN-RVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDL 807 (858)
T ss_pred HHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHH
Confidence 331 11 1 345555555544431 122344555666665553334433 23335899999999
Q ss_pred hc-cCCCcchHHH
Q 000655 1178 SN-FGVGSQREAF 1189 (1370)
Q Consensus 1178 ~~-~~~~~~~~~~ 1189 (1370)
+. |.+|..|..|
T Consensus 808 a~mfpkgelk~~~ 820 (858)
T COG5215 808 AGMFPKGELKFGL 820 (858)
T ss_pred HHhCCCcchhhcc
Confidence 97 6666554443
No 239
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=23.66 E-value=1.3e+03 Score=27.51 Aligned_cols=113 Identities=14% Similarity=0.208 Sum_probs=70.6
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhc--------Cc--------HHHHHHHHH
Q 000655 765 LHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHI--------TD--------KHLRLETLG 828 (1370)
Q Consensus 765 l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i--------~~--------~~~r~~~l~ 828 (1370)
+..+..+|.+.......++-.+|+.++...|+.+. .+|-+-.+.-...++.+ .. +.+|...++
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a-~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALA-REVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHH-HHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 55666777777777778888899999887776662 22333222222211111 11 278888888
Q ss_pred HHHHHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHhhcCc-ccHHHHHHHHHHHHc
Q 000655 829 AISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHA-VLSFLFLEHLISALN 894 (1370)
Q Consensus 829 ai~~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~ala~d~-~l~~~vL~~LL~~L~ 894 (1370)
=+..+-.+....+. ..+| . ...+ +..+|+-+..|+ ++...||+.|-+.+-
T Consensus 137 F~Lsfl~~~~~~~~-~~lL-------------~-~~~~-~~~l~k~l~~D~~~~v~~iL~~l~~~Vl 187 (330)
T PF11707_consen 137 FWLSFLSSGDPELK-RDLL-------------S-QKKL-MSALFKGLRKDPPETVILILETLKDKVL 187 (330)
T ss_pred HHHHHHccCCHHHH-HHHH-------------H-cCch-HHHHHhcccCCCHHHHHHHHHHHHHHhc
Confidence 88888777766555 4443 2 4444 667899999876 566666666665433
No 240
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=23.60 E-value=1.1e+03 Score=30.73 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=81.6
Q ss_pred HHhhcccCChhHHHHHHHHHHHHhccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 000655 1113 ILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQ 1192 (1370)
Q Consensus 1113 ll~~L~d~d~~V~leAm~~L~~lL~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ 1192 (1370)
++..+-|++..|--.++.++-+++-.-+.-.-.-+--+...++-....+....+|+.+...+.++.-.+....++.+...
T Consensus 424 lvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~k 503 (678)
T KOG1293|consen 424 LVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAK 503 (678)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33444555666777777777777643332211112223344455566677889999999999999875555555555555
Q ss_pred HHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhhhhhhhhccccCCcCCCCChHHHHHHHHHHHHHhCcchHHHHHHH
Q 000655 1193 IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGS 1272 (1370)
Q Consensus 1193 v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~~~~~~~~~~l~~ 1272 (1370)
+..+.+ +-..+|+++.|-..|=.-|+... .+. ++...++.+++++.+..-..|
T Consensus 504 i~a~~i--~~l~nd~d~~Vqeq~fqllRNl~-----------------c~~--------~~svdfll~~~~~~ld~i~l~ 556 (678)
T KOG1293|consen 504 IPANLI--LDLINDPDWAVQEQCFQLLRNLT-----------------CNS--------RKSVDFLLEKFKDVLDKIDLQ 556 (678)
T ss_pred hhHHHH--HHHHhCCCHHHHHHHHHHHHHhh-----------------cCc--------HHHHHHHHHhhhHHHHHHHHH
Confidence 665554 34457999999998844443311 111 234556777888777766666
Q ss_pred H
Q 000655 1273 T 1273 (1370)
Q Consensus 1273 ~ 1273 (1370)
.
T Consensus 557 l 557 (678)
T KOG1293|consen 557 L 557 (678)
T ss_pred H
Confidence 4
No 241
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.48 E-value=3.2e+02 Score=36.10 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=43.1
Q ss_pred ChhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHH
Q 000655 1281 WPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSA-DAIVRATCSSSLGWLLKS 1342 (1370)
Q Consensus 1281 ~~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dp-dp~VR~~Aa~aL~~l~k~ 1342 (1370)
...||+--||++|.-+.---..+ -..-++.++.. |++|. |-.||-.|++|+.....=
T Consensus 500 ~RiiRRRVa~ilg~Wvsvq~~~e----~k~l~Y~a~ln-LL~d~~D~vV~Ltt~~tlkl~vDD 557 (978)
T KOG1993|consen 500 SRIIRRRVAWILGQWVSVQQKLE----LKPLLYCAFLN-LLQDQNDLVVRLTTARTLKLVVDD 557 (978)
T ss_pred hhHHHHHHHHHHhhhhheechHh----HHHHHHHHHHH-hcCccccceeehHHHHHHHHhhhh
Confidence 35689999999997765211111 13568899999 89998 999999999999887643
No 242
>PF05536 Neurochondrin: Neurochondrin
Probab=23.27 E-value=1.7e+03 Score=28.70 Aligned_cols=140 Identities=15% Similarity=0.150 Sum_probs=83.4
Q ss_pred HHHHHHhhhhcccccCcchHHHHHHHHhhhcCCc----hhhHHHH----HHHHHHhhcCC----CChhHHHHHhhhccCC
Q 000655 1030 TICLILTKSINRQQRFQREAAAAALSEFVRYSGG----FDSLLEQ----MVEALCRHVSD----ESPTVRGLCLRGLVQI 1097 (1370)
Q Consensus 1030 ~i~~~L~~~L~s~~~~~Ri~a~af~sELl~~~~~----~~~l~~~----~i~~L~~~l~D----~~~~VR~lsLrGLgnl 1097 (1370)
+.+......|++..+.+|.+|.+.++.+++.... .+.+.+. -+++|.+.-.. +....+.+++-=|+..
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4455667788898999999999999999986432 1123333 33444443222 3355666666544432
Q ss_pred ------cch-hhhhhHHHHHHHHHhhcccCCh-hHHHHHHHHHHHHhccCCcCCcchh-----HHhHHhhhcCcCcCCCh
Q 000655 1098 ------PSI-HIHQYATQVLSVILALLDDLDE-SVQLTAVSCLLTILKSSSKDAVEPI-----LLNLSVRLRNLQVSMNV 1164 (1370)
Q Consensus 1098 ------~~~-~v~~~~~~lL~all~~L~d~d~-~V~leAm~~L~~lL~~l~~~~~~~~-----l~~i~~~lrpffede~~ 1164 (1370)
+.+ ++-.. +|.+++.+...++ .++-+++.+|..|...- ++...+ +..++..+.. ++
T Consensus 85 ~~~~~~a~~~~~~~~----IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~--~G~~aLl~~g~v~~L~ei~~~-----~~ 153 (543)
T PF05536_consen 85 CRDPELASSPQMVSR----IPLLLEILSSSSDLETVDDALQCLLAIASSP--EGAKALLESGAVPALCEIIPN-----QS 153 (543)
T ss_pred cCChhhhcCHHHHHH----HHHHHHHHHcCCchhHHHHHHHHHHHHHcCc--HhHHHHHhcCCHHHHHHHHHh-----Cc
Confidence 222 33333 4555555555466 89999999999998432 222111 1122222222 66
Q ss_pred HHHHHHHHHHHHhhcc
Q 000655 1165 KMRRNAFAAFGALSNF 1180 (1370)
Q Consensus 1165 ~vR~aAi~LfG~L~~~ 1180 (1370)
.....|+.+...+...
T Consensus 154 ~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSR 169 (543)
T ss_pred chHHHHHHHHHHHHHh
Confidence 7788899998888774
No 243
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.17 E-value=1e+02 Score=32.17 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCChhHHHHHhhhccCCcchhhhhhHHH
Q 000655 1069 EQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQ 1108 (1370)
Q Consensus 1069 ~~~i~~L~~~l~D~~~~VR~lsLrGLgnl~~~~v~~~~~~ 1108 (1370)
+.+-+.+..-+.++++.|+++||+.+..--...+.+|.+.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~ 55 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDN 55 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHH
Confidence 4456677788899999999999999998766566777644
No 244
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=22.75 E-value=7.3e+02 Score=25.90 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred hhcHHHHHHhccCCCCChhHHHH-HHHHHHHccCChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccc
Q 000655 724 SSLEDVIAILRSDASIDPSEVFN-RIVSSVCILLTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETD 802 (1370)
Q Consensus 724 ~~l~d~~~~l~~~~~~~~~~~~~-~i~~~i~~~L~~~el~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~d 802 (1370)
+++.+.|+...++...++.--.. .||..|... +..=.+-+..+...|..++++...-|-.+|..+++..|..+..+
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~--~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~e- 79 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSK--DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDE- 79 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHH-
Q ss_pred hh--hHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccCch
Q 000655 803 VS--RTTQSLLSAAVHITDKHLRLETLGAISCLAENTNSK 840 (1370)
Q Consensus 803 V~--~I~~~I~~~L~~i~~~~~r~~~l~ai~~La~~h~~~ 840 (1370)
|+ +.++.+..-+...+.+.+|+.++..|...+......
T Consensus 80 vas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 80 VASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
No 245
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=22.55 E-value=1.6e+02 Score=23.47 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1310 TQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1310 e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
+.+.+.|.-.-..|+|+.||.-|..+|..|-
T Consensus 4 ~~l~r~Lk~V~~~D~D~lvr~hA~~~Le~Le 34 (36)
T PF10304_consen 4 EDLYRTLKYVESTDNDDLVREHAQDALEELE 34 (36)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence 5667777764457999999999999987663
No 246
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.14 E-value=2.3e+03 Score=29.80 Aligned_cols=139 Identities=23% Similarity=0.333 Sum_probs=85.2
Q ss_pred HHHHHHHHh-----hcCCCChhHHHHHhhhccCC----cchhhhhhHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccC
Q 000655 1069 EQMVEALCR-----HVSDESPTVRGLCLRGLVQI----PSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSS 1139 (1370)
Q Consensus 1069 ~~~i~~L~~-----~l~D~~~~VR~lsLrGLgnl----~~~~v~~~~~~lL~all~~L~d~d~~V~leAm~~L~~lL~~l 1139 (1370)
+.+|+.+-+ +-+|-.|.+|..|++-||-. +..=. ...-|.-+==+|.|++..|++..+.+|.++...-
T Consensus 281 ~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl---~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~ 357 (1048)
T KOG2011|consen 281 ESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFL---SDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKD 357 (1048)
T ss_pred HHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHh---cchHHHHhcceeecCccHHHHHHHHHHHHHHhcc
Confidence 445555544 45899999999999999932 22100 0112333445688899999999999999999872
Q ss_pred Cc-CCcchhHHhHHhhhcCcC-cCCChHHHHHHHHHHHHhhccCCCcchHHHHHHHHhhhhHHHHhccCCChhHHHHHHH
Q 000655 1140 SK-DAVEPILLNLSVRLRNLQ-VSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRN 1217 (1370)
Q Consensus 1140 ~~-~~~~~~l~~i~~~lrpff-ede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~ 1217 (1370)
+. ..++.|.-.--.||-.-- -|.+..||+.++.+.=.+..-+-=..+ -+.++.--+-|.++.|+.++..
T Consensus 358 ~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~---------di~~Vy~Li~d~~r~~~~aa~~ 428 (1048)
T KOG2011|consen 358 EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDK---------DILIVYSLIYDSNRRVAVAAGE 428 (1048)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccChh---------HHHHHHHHHhccCcchHHHHHH
Confidence 22 234444434333333222 467789999998876665431111111 2233344445999999988754
Q ss_pred HH
Q 000655 1218 TL 1219 (1370)
Q Consensus 1218 tL 1219 (1370)
=|
T Consensus 429 fl 430 (1048)
T KOG2011|consen 429 FL 430 (1048)
T ss_pred HH
Confidence 43
No 247
>PRK09169 hypothetical protein; Validated
Probab=21.70 E-value=3e+03 Score=31.16 Aligned_cols=314 Identities=17% Similarity=0.110 Sum_probs=162.6
Q ss_pred ChHHHHHHHH-------HHHHHhhcchHHHHHHHhcCCCCChhhHHHHHHHHHhHhhhc-------CchhHHHHHHHHhh
Q 000655 972 EPLRAILTSF-------QAFCECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIK-------RPKEVQTICLILTK 1037 (1370)
Q Consensus 972 ~P~~~aleAl-------k~ll~~~g~~~~~~~L~~~g~W~~~e~~~~gV~lLAr~m~~~-------~~~~~~~i~~~L~~ 1037 (1370)
.+|+.+.+.+ ..++...+.+++...+.--..|.+...--+|+..||.-+..- +++++...++-+.+
T Consensus 179 ~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSK 258 (2316)
T PRK09169 179 TDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSK 258 (2316)
T ss_pred hHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhc
Confidence 3477777766 444555667777777776678987788888999888877642 35677777887777
Q ss_pred hhcccccCcchHHHHHHHHhhhcCCchh----hHHHHHHHHHHhhcCCCC--hhHHHHHhhhccCCcchhhhhhHHHHHH
Q 000655 1038 SINRQQRFQREAAAAALSEFVRYSGGFD----SLLEQMVEALCRHVSDES--PTVRGLCLRGLVQIPSIHIHQYATQVLS 1111 (1370)
Q Consensus 1038 ~L~s~~~~~Ri~a~af~sELl~~~~~~~----~l~~~~i~~L~~~l~D~~--~~VR~lsLrGLgnl~~~~v~~~~~~lL~ 1111 (1370)
.-.+ +..|-++-++-.++-..+.... .-+-.++|.|.+|=.++. ..+..++-|=..... ....+.++-+.
T Consensus 259 Wp~~--~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~--l~~~~~aQ~vA 334 (2316)
T PRK09169 259 WPDD--EACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERG--LLQAMNAQAVA 334 (2316)
T ss_pred CCCC--hHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChh--hhhhCCHHHHH
Confidence 7333 3333344444334433343321 122346777777765432 123333333111111 12223344444
Q ss_pred HHHhhccc-CChhHHHHHHHHHHHHh-------ccCCcCCcchhHHhHHhhhcCcCcCCChHHHHHHHHHHHHhhccCCC
Q 000655 1112 VILALLDD-LDESVQLTAVSCLLTIL-------KSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVG 1183 (1370)
Q Consensus 1112 all~~L~d-~d~~V~leAm~~L~~lL-------~~l~~~~~~~~l~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~ 1183 (1370)
-.+++|.. .+...-..|+..|..-| +.+..+.+.+.+--++. . .+.+..|.+|-.|.+.|.+- .
T Consensus 335 N~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSK-w-----p~~~~cr~AA~aLA~rL~~~--~ 406 (2316)
T PRK09169 335 NALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSK-W-----PDEEACRAAAEALAARLARD--A 406 (2316)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHc-C-----CCchHHHHHHHHHHHHHHhc--h
Confidence 45555544 23344444555554443 44555555555544442 1 24566899999999998762 2
Q ss_pred cchHHHHHH-HHhhhhHHHHhccCCChhHHHHHHHHHHhhchhhhh--hhhhhhccccCCcCCCCChHHHHHHHHHHHHH
Q 000655 1184 SQREAFLEQ-IHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI--GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQ 1260 (1370)
Q Consensus 1184 ~~~~~~~eQ-v~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~lL~w--~l~~lf~~~~~~~~~~l~~~~f~~~i~k~L~~ 1260 (1370)
...+.|.-| |-+++--| --+.|.. .|+.+...++.-+.- .+. +.++--++-|.+ ..
T Consensus 407 ~l~~~fnaQ~vANaLnAL-sKWp~~~-----~c~~aa~aLA~rl~~~a~lr-----------~~fn~QeLaN~L-nA--- 465 (2316)
T PRK09169 407 GLRAALNAQGVANALNAL-SKWPGAE-----ACRQAALALAARLAADARLR-----------NALSAQELANAL-NA--- 465 (2316)
T ss_pred hhhhhcChHHHHHHHHHH-hcCCCch-----HHHHHHHHHHHHHhhchhhh-----------hhCCHHHHHHHH-HH---
Confidence 234456666 33333332 2333222 233333333322211 111 112212222111 11
Q ss_pred hCcchHHHHHHHHHHhhcCCC-hhHHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHH
Q 000655 1261 HFPSRIDSYMGSTIQAFEAPW-PIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSL 1336 (1370)
Q Consensus 1261 ~~~~~~~~~l~~~l~y~kS~~-~~IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL 1336 (1370)
+-|-|. +..|.+|..+.+-+... ...+...+..++-++|-. |-|=|+......|+.+|
T Consensus 466 ---------------LsKWp~~~~c~~aa~~LA~rl~~~--~~l~~af~~Q~lAN~LnA-LsKwp~~~~c~~aA~aL 524 (2316)
T PRK09169 466 ---------------LSKWPDEAACRRAAEALAARLAGD--AELRQALDAQGLANALNA-LSKWPDSDACRAAAEAL 524 (2316)
T ss_pred ---------------HhcCCchHHHHHHHHHHHHHHhcC--hhhhhhcChHHHHHHHHH-HhcCCccHHHHHHHHHH
Confidence 223333 33677777777766442 233334455666666666 66668877777777776
No 248
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=21.04 E-value=2.3e+02 Score=36.23 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=45.3
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCCCCChhH-HHHHHHHHH---H
Q 000655 678 RCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSE-VFNRIVSSV---C 753 (1370)
Q Consensus 678 rC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~d~~~~l~~~~~~~~~~-~~~~i~~~i---~ 753 (1370)
||++|+++.++.|-+|--.++.+.-.++. + ...+.+|++..+....++. .|+.. +-..+...| +
T Consensus 105 R~aHPd~~fv~aAe~a~~~~~e~ve~LNT--------n-~~LY~~Lk~~l~~~~~l~~---~d~e~~v~~lll~DFE~sG 172 (704)
T KOG2090|consen 105 RQAHPDPEFVEAAEEACRSMFELVESLNT--------N-VALYQKLKKVLQDSSRLDD---LDPETYVARLLLDDFEKSG 172 (704)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhcc--------C-HHHHHHHHHHhcCcccccc---cCHHHHHHHHHHHHHHhhc
Confidence 79999999999999999999888765543 1 1225555543221111211 24333 111122222 3
Q ss_pred ccCChhHHHHHHHH
Q 000655 754 ILLTKDELVATLHS 767 (1370)
Q Consensus 754 ~~L~~~el~~~l~~ 767 (1370)
.+|++++...|+.-
T Consensus 173 IhL~~~kr~kfv~L 186 (704)
T KOG2090|consen 173 IHLDPEKREKFVQL 186 (704)
T ss_pred ccCCHHHHHHHHHH
Confidence 68888887777654
No 249
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.48 E-value=2.5e+03 Score=29.64 Aligned_cols=596 Identities=13% Similarity=0.081 Sum_probs=284.5
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCCCcchhhhhhhhhhcHHHHHHhccCCCCChhHHHH--HHHHHHHcc
Q 000655 678 RCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN--RIVSSVCIL 755 (1370)
Q Consensus 678 rC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~d~~~~l~~~~~~~~~~~~~--~i~~~i~~~ 755 (1370)
.-.|+-|-||..|.++|...|+=- +.+....+..-. ....-|-..++..-+ +.+...+++ .+.+.++..
T Consensus 146 ~~~h~~pkvRk~a~~~i~~VL~~p-----~~~~~~~HpA~~--~vak~cl~~~e~~~~--~a~~t~v~~~L~Ll~~~~~~ 216 (1176)
T KOG1248|consen 146 FAAHKKPKVRKAAQRGIAAVLKGP-----PFAPDAEHPASL--SVAKFCLALIESKLG--SAENTTVLRSLMLLRDVLST 216 (1176)
T ss_pred HHhcCchHHHHHHHHHHHHHHcCC-----CCCccccchHHH--HHHHHHHHHHHhhhc--hHHHHHHHHHHHHHHHhhcc
Confidence 457899999999999999775411 111111111101 000111111121111 012233443 466777777
Q ss_pred CChhHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHhhcCcHHHH----HHHHHHHH
Q 000655 756 LTKDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLR----LETLGAIS 831 (1370)
Q Consensus 756 L~~~el~~~l~~ll~~L~d~~~~~~~~A~~~L~~~l~~rg~~L~e~dV~~I~~~I~~~L~~i~~~~~r----~~~l~ai~ 831 (1370)
+|...+..+..+|+.-...........+-+.+..+++.+..-+...=-++++..|+.-=++.++...- +.+-++..
T Consensus 217 ~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~ 296 (1176)
T KOG1248|consen 217 FPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHD 296 (1176)
T ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHH
Confidence 88888888888888888877777777888888888887777664333667777777776776665543 55667779
Q ss_pred HHhhccCchhHHHHHHhhhcccchhhhhccccCCCCchhHHHHh-hcCcccHHHHHHHHHHHHccCCCccCCCccCCCCC
Q 000655 832 CLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAF-SQHAVLSFLFLEHLISALNQTPFVKGDMEKGDYSS 910 (1370)
Q Consensus 832 ~La~~h~~~vV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~al-a~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~~~~~ 910 (1370)
.||.++.++.+ ..+. +-++. +...+ +..+.+..-+-+-+..++++.+.+.+..
T Consensus 297 ~la~~q~~~~~-~~~~----------------~~~~~--~~t~~~s~~~e~~q~a~q~l~~il~~sv~~~~~~------- 350 (1176)
T KOG1248|consen 297 ILATLQEEKAL-QALP----------------RLFSL--FFTILESLIEELVQAASQSLKEILKESVTVIDAL------- 350 (1176)
T ss_pred HHHHhCHHHHH-Hhhh----------------hhhhH--HHHHHhcccHHHHHHHHHHHHHHhcccCcccHHH-------
Confidence 99999987655 4331 11221 22222 2344555555666677776666533310
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHHHHHhhhcccCC--CC---------CCCChHHHHHH
Q 000655 911 HSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLA--SS---------GQHEPLRAILT 979 (1370)
Q Consensus 911 ~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Lf~aLL~ql~~~~~~~--~~---------~~~~P~~~ale 979 (1370)
+ ..+++.++-.. |. ++-.+-=++++++.-..|+..|.- ++ ..-.+++.-++
T Consensus 351 --------c------~~~~~~~l~~k---f~-~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld 412 (1176)
T KOG1248|consen 351 --------C------SKQLHSLLDYK---FH-AVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLD 412 (1176)
T ss_pred --------H------HHHHHHHHcch---HH-HHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 0 11345555433 22 222233355565655556544431 00 01112222222
Q ss_pred -HHHHHHHhhcchHHHHHHHh---------cCCCC-----------ChhhHHHHHHHHHhHhhhcC--------ch-hHH
Q 000655 980 -SFQAFCECVGDLEMRKILAR---------DGEQN-----------DKEKWINLIGDVAGCVSIKR--------PK-EVQ 1029 (1370)
Q Consensus 980 -Alk~ll~~~g~~~~~~~L~~---------~g~W~-----------~~e~~~~gV~lLAr~m~~~~--------~~-~~~ 1029 (1370)
+.=+.....|-+.+.+.+-. ...|. +...|.+-+--||..|-... .. ...
T Consensus 413 ~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~ 492 (1176)
T KOG1248|consen 413 QCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYD 492 (1176)
T ss_pred HHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHH
Confidence 33333344566555544322 12465 66677777777777664321 11 233
Q ss_pred HHHHHHhhhhc----ccccCc--------------------chHHHHHHHHhhhcC---Cc----hhhHHHHHHHHH---
Q 000655 1030 TICLILTKSIN----RQQRFQ--------------------REAAAAALSEFVRYS---GG----FDSLLEQMVEAL--- 1075 (1370)
Q Consensus 1030 ~i~~~L~~~L~----s~~~~~--------------------Ri~a~af~sELl~~~---~~----~~~l~~~~i~~L--- 1075 (1370)
.++.+|+.+|- .|-|.+ |.+.+.-+..|++.+ .. .+.+-+..-|.|
T Consensus 493 tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~l 572 (1176)
T KOG1248|consen 493 TLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRL 572 (1176)
T ss_pred HHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHH
Confidence 34444443332 222222 333334444444432 00 011111111111
Q ss_pred HhhcCC------CChhHHHHHhhhccCCcc----hhhhhhHHHHHHHHHhhcccCC-hhHHHHHHHHHHHHhccCCcCCc
Q 000655 1076 CRHVSD------ESPTVRGLCLRGLVQIPS----IHIHQYATQVLSVILALLDDLD-ESVQLTAVSCLLTILKSSSKDAV 1144 (1370)
Q Consensus 1076 ~~~l~D------~~~~VR~lsLrGLgnl~~----~~v~~~~~~lL~all~~L~d~d-~~V~leAm~~L~~lL~~l~~~~~ 1144 (1370)
-+.-.. +.+..|.-.|.-.-+.-. .++....+.-+.+..+++++.- +.....-+..+-.+....+...+
T Consensus 573 fn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v 652 (1176)
T KOG1248|consen 573 FNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV 652 (1176)
T ss_pred HHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH
Confidence 111111 111122222211111100 0111111111222233332111 22444445555555666666666
Q ss_pred chhHHhHHhhhcCcCcCC-ChHHHHHHHHHHHHhhccCCCcchHHHHHH----HHhhhhHHHHhccCCChhHHH---HHH
Q 000655 1145 EPILLNLSVRLRNLQVSM-NVKMRRNAFAAFGALSNFGVGSQREAFLEQ----IHAMLPRLILHIYDDDLSVRQ---ACR 1216 (1370)
Q Consensus 1145 ~~~l~~i~~~lrpffede-~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQ----v~~~LvpLLlHL~D~~~~V~~---ack 1216 (1370)
+.++ .+.|.|++- +..++.-|+++++.|+.+. .-+.+.+| |.+.|.+=. ++.+..++. +|=
T Consensus 653 s~l~-----~v~~~~e~~~~~~vQkK~yrlL~~l~~~~---s~~~~~~q~i~~I~n~L~ds~---qs~~~~~~~~rl~~L 721 (1176)
T KOG1248|consen 653 SKLF-----TVDPEFENSSSTKVQKKAYRLLEELSSSP---SGEGLVEQRIDDIFNSLLDSF---QSSSSPAQASRLKCL 721 (1176)
T ss_pred HHHH-----HhhHHhhccccHHHHHHHHHHHHHHhcCC---chhhHHHHHHHHHHHHHHHHH---hccchHHHHHHHHHH
Confidence 6555 678999987 8999999999999999861 22233333 444444432 333322222 333
Q ss_pred HHHHhhchhhhh-----hhhhhh-ccccCCcC-CCCChHHHHHHHHHH--HH---HhC-cchHHHHHHHHHHhhcCCChh
Q 000655 1217 NTLKQVAPFMEI-----GVYGIF-NSHCFNSD-HRSDYETFVRDLTRQ--FV---QHF-PSRIDSYMGSTIQAFEAPWPI 1283 (1370)
Q Consensus 1217 ~tL~~~a~lL~w-----~l~~lf-~~~~~~~~-~~l~~~~f~~~i~k~--L~---~~~-~~~~~~~l~~~l~y~kS~~~~ 1283 (1370)
.++..+.+.-.. .+.+++ .....+.+ ++..| +.+-.++++ .. .+- ++.++.|+.-...-+=..-..
T Consensus 722 ~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af-~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~ 800 (1176)
T KOG1248|consen 722 KRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAF-ALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTR 800 (1176)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHH-HHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHH
Confidence 444444441111 112222 11111111 11111 222223310 00 111 457888887766544444444
Q ss_pred HHHHHHHHHhhhhccCchhhhhhccHHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 000655 1284 IQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1284 IR~aA~~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
+++.-..-++.+++... ...+....+.+++.... .+....+.|+..|-..+..+.
T Consensus 801 ~~as~Ivai~~il~e~~-~~ld~~~l~~li~~V~~-~L~s~sreI~kaAI~fikvlv 855 (1176)
T KOG1248|consen 801 VVASDIVAITHILQEFK-NILDDETLEKLISMVCL-YLASNSREIAKAAIGFIKVLV 855 (1176)
T ss_pred HHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHH
Confidence 55544445555555332 22222234667777776 677788888887776666554
No 250
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=20.04 E-value=1.3e+03 Score=26.78 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHh--cCCCCChhhHHHHHHHHHhHhhhcC-chhHHHHHHHHhhhhcccccCcchHH
Q 000655 974 LRAILTSFQAFCECVGDLEMRKILAR--DGEQNDKEKWINLIGDVAGCVSIKR-PKEVQTICLILTKSINRQQRFQREAA 1050 (1370)
Q Consensus 974 ~~~aleAlk~ll~~~g~~~~~~~L~~--~g~W~~~e~~~~gV~lLAr~m~~~~-~~~~~~i~~~L~~~L~s~~~~~Ri~a 1050 (1370)
+..+-+++..+....|.......|.. .|...+.++|..-| ++.+..+- |.+--.++.++..+|.++....|.-+
T Consensus 132 ~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v---~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 132 CIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQV---VSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHH---HHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHH
Confidence 55666788888877777777776664 34555556555444 55666554 45566777777777777666667766
Q ss_pred HHHHHHhhhcC
Q 000655 1051 AAALSEFVRYS 1061 (1370)
Q Consensus 1051 ~af~sELl~~~ 1061 (1370)
+-++--+++..
T Consensus 209 L~iL~~ll~~~ 219 (262)
T PF14225_consen 209 LQILKVLLPHV 219 (262)
T ss_pred HHHHHHHhccc
Confidence 66666666653
Done!