Query 000655
Match_columns 1370
No_of_seqs 245 out of 386
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 16:58:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000655.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_427-430//hhsearch_pdb/000655hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 147.8 52.3 107 1072-1179 631-742 (852)
2 1b3u_A Protein (protein phosph 1.0 1 1 142.0 42.9 263 1028-1340 322-586 (588)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 139.0 51.0 142 1081-1225 597-743 (852)
4 2bpt_A Importin beta-1 subunit 1.0 1 1 137.8 56.1 214 1012-1225 621-858 (861)
5 1u6g_C TIP120 protein, CAND1; 1.0 1 1 136.4 70.5 943 58-1224 46-1035(1230)
6 1u6g_C TIP120 protein, CAND1; 1.0 1 1 133.8 57.3 891 246-1355 127-1108(1230)
7 2bpt_A Importin beta-1 subunit 1.0 1 1 133.7 46.1 262 1047-1341 573-857 (861)
8 1qgr_A Protein (importin beta 1.0 1 1 127.0 41.3 231 1085-1343 623-873 (876)
9 1b3u_A Protein (protein phosph 1.0 1 1 123.9 35.4 529 591-1343 12-550 (588)
10 1qgr_A Protein (importin beta 1.0 1 1 117.1 59.4 211 1011-1224 630-871 (876)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=147.84 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=44.2
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99998530899935899985201577511---244337779999994204688368999999999985128968750257
Q 000655 1072 VEALCRHVSDESPTVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPIL 1148 (1370)
Q Consensus 1072 i~~L~~~l~D~~~~VR~lalrGLgnl~~~---kv~~~~~~lL~all~gL~d~d~~V~leAm~~L~~iL~~l~~~~~~~~~ 1148 (1370)
+..+...+.|+++.||.-+...+|.++.. ++.+|.+.+++.++..+++.+..+...|..+++.+....+. .+.++.
T Consensus 631 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~~~p~~ 709 (852)
T 4fdd_A 631 LTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-EMQPYI 709 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-GGGGGT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 9999998389984499999999999999816888987999999999876942068999999999999997117-678789
Q ss_pred HHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHC
Q ss_conf 86785312867679--94789999999998530
Q 000655 1149 LNLSVRLRNLQVSM--NVKMRRNAFAAFGALSN 1179 (1370)
Q Consensus 1149 ~~i~~~lrpffede--~~~vR~aAi~LfG~L~~ 1179 (1370)
..+...+-+.+++. +..+|..|+.++|.++.
T Consensus 710 ~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 710 PMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999857998872077889999999998
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=141.99 Aligned_cols=263 Identities=17% Similarity=0.157 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCH-HHHHHH
Q ss_conf 7999999944211456576168899999851067861108999999998530899935899985201577511-244337
Q 000655 1028 VQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYA 1106 (1370)
Q Consensus 1028 ~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lalrGLgnl~~~-kv~~~~ 1106 (1370)
.+.++..+...+++++...|.+++..+.++...... ....+.++..+...++|+++.||..++.+|+.+... ....+.
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 400 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS 400 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999999999986199889999999999999888627-6788889999999837983689999999899999754989898
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 77999999420468836899999999998512896875025786785312867679947899999999985301788615
Q 000655 1107 TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQR 1186 (1370)
Q Consensus 1107 ~~lL~all~gL~d~d~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~ 1186 (1370)
+.+++.+...+.|.+..|+..++..++.+...++...+.+.+... +..++.|.+..||.+|+..+|.+....+.
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--- 474 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL---CMAWLVDHVYAIREAATSNLKKLVEKFGK--- 474 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHH---HHHGGGCSSHHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHHHHCC---
T ss_conf 888999999835998139999999999999880989899999999---99882598199999999999999999684---
Q ss_pred HHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 8799999955667987-315899469999999999430113345554310456776888985899999999999959421
Q 000655 1187 EAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSR 1265 (1370)
Q Consensus 1187 ~~~~eQv~~~LvpLLl-HL~D~~~~V~~ack~tL~~~a~lL~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~ 1265 (1370)
+++ ...++|.+. .++|++..||.++-.++..++..++- . ..
T Consensus 475 ~~~----~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~--------------------------------~--~~ 516 (588)
T 1b3u_A 475 EWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ--------------------------------D--IT 516 (588)
T ss_dssp HHH----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH--------------------------------H--HH
T ss_pred HHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH--------------------------------H--HH
T ss_conf 457----888999999983189879999999999999976698--------------------------------9--99
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999998752099936779999999653014813554101699999999998532998036889999999999
Q 000655 1266 IDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCDDQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLL 1340 (1370)
Q Consensus 1266 ~~~~l~~~l~y~kS~~~~IR~aAa~fiG~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~ 1340 (1370)
...++...+..++++.+.+|.+|+..+|.+....+.+.. .+.+...|.. +..|+|+.||..|.+|++.+.
T Consensus 517 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~~~p~l~~-l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL----QSEVKPILEK-LTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH----HHHHHHHHHH-HTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999998667899862799999999999998653645----9999999998-747996669999999999763
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=139.02 Aligned_cols=142 Identities=14% Similarity=0.122 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHHCCCCCCH---HHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99935899985201577511---244337--7799999942046883689999999999851289687502578678531
Q 000655 1081 DESPTVRGLCLRGLVQIPSI---HIHQYA--TQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRL 1155 (1370)
Q Consensus 1081 D~~~~VR~lalrGLgnl~~~---kv~~~~--~~lL~all~gL~d~d~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~l 1155 (1370)
.++..+|.-+++.+|.++.. +...|. +.+++.++..+.|.+.+|+..+...++.+....+ ..+.+++..+..-+
T Consensus 597 ~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 597 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPIL 675 (852)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 87611999999999789998747699883677189999998389984499999999999999816-88898799999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHH
Q ss_conf 2867679947899999999985301788615879999995566798731589946999999999943011
Q 000655 1156 RNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1225 (1370)
Q Consensus 1156 rpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l 1225 (1370)
...++++..++|..|+...|+++...+ ..-.++.+.+...+++++-+ .+....|...+..|+++.+..
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~~-~~~~p~~~~il~~L~~~l~~-~~~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQMG-IEMQPYIPMVLHQLVEIINR-PNTPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHHG-GGGGGGTHHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHH
T ss_conf 987694206899999999999999711-76787899999999998579-988720778899999999986
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=137.85 Aligned_cols=214 Identities=13% Similarity=0.098 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCCCC--HHHHH
Q ss_conf 8999996764109522799999994421145657616889999985106786-11089999999985308999--35899
Q 000655 1012 LIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDES--PTVRG 1088 (1370)
Q Consensus 1012 gV~lLAr~l~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D~~--~~VR~ 1088 (1370)
.++.++.++-..-.++++.++..+...+++.+...|..++..++.+...... .....+.++..+.+.+.|++ +.+|.
T Consensus 621 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~ 700 (861)
T 2bpt_A 621 AISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKP 700 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999766099999999999998865566789999999999999874540311199999999997278655676659
Q ss_pred HHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHHHCCCCC--CCCCHHHHHHH
Q ss_conf 985201577511---244337779999994204688-----------36899999999998512896--87502578678
Q 000655 1089 LCLRGLVQIPSI---HIHQYATQVLSVILALLDDLD-----------ESVQLTAVSCLLTILKSSSK--DAVEPILLNLS 1152 (1370)
Q Consensus 1089 lalrGLgnl~~~---kv~~~~~~lL~all~gL~d~d-----------~~V~leAm~~L~~iL~~l~~--~~~~~~~~~i~ 1152 (1370)
.++.++|.++.. ....|.+.+++.++..+.... ..++..++.+++.++..++. ..+.++...+.
T Consensus 701 ~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~ 780 (861)
T 2bpt_A 701 AVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIF 780 (861)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999840508999999999999997367899975889999999999999999999998267788999999999
Q ss_pred HHHCCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHH
Q ss_conf 5312867679----94789999999998530178861587999-9995566798731589946999999999943011
Q 000655 1153 VRLRNLQVSM----NVKMRRNAFAAFGALSNFGVGSQREAFLE-QIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPF 1225 (1370)
Q Consensus 1153 ~~lrpffede----~~~vR~aAi~LfG~L~~~~~~~~~~~~~e-Qv~~~LvpLLlHL~D~~~~V~~ack~tL~~~a~l 1225 (1370)
..+.....|. ++.+|.+|+.++|+++...+|..-..+.. ++...++..+-+.++.+..|++.|+++++.++..
T Consensus 781 ~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~ 858 (861)
T 2bpt_A 781 QFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQ 858 (861)
T ss_dssp HHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999998748555786999999999999999882882488987267999999988535578877899999999999987
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=136.39 Aligned_cols=943 Identities=14% Similarity=0.116 Sum_probs=425.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 58899998664200377899999999999861264236655432010100233357412123454445678890479999
Q 000655 58 RPLLLEAVKSLLDEQNLAVQKAISELIVVMASHCYLIGPSGELFVEYLVRHCALSDQKKYVNESSKVKIGAFCPTELRAI 137 (1370)
Q Consensus 58 ~~~i~~~vk~~l~d~~~kVr~al~~~I~ama~~~yl~~~~g~~~i~fiv~q~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 137 (1370)
...++..+-..+.|++.+||.+-+..+..++.+.. ...+.+++..+.-.-. + +...+|..
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~------~~~~~~i~~~Ll~~l~----------d----~~~~vR~~ 105 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK------EYQVETIVDTLCTNML----------S----DKEQLRDI 105 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHHTT----------C----SSSHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHC----------C----CCHHHHHH
T ss_conf 99999999998669998999999999999997587------9899999999999866----------9----83889999
Q ss_pred HHHHHHHHHCCCHHH------HHHHHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 885466761130134------471489977420573----6733122288999999974136898644444577899987
Q 000655 138 CEKGLLLLTITIPEM------QHILWPLLLKMIIPR----AYTSAAATVCRCISELCRHRSSSSNVMLSECKARDDIPNP 207 (1370)
Q Consensus 138 c~~~L~lltttV~~m------~~~LWP~LL~~i~p~----~yT~al~~ick~l~~La~k~~~~~~~~~~~~~~~~~lPsp 207 (1370)
+.++|..+....+.. ..-.||.++.++... +-...-...+.++..++... ++.. .|.-
T Consensus 106 a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~---~~~l---------~~~~ 173 (1230)
T 1u6g_C 106 SSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ---GGLL---------VNFH 173 (1230)
T ss_dssp HHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT---CSSC---------TTTH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---HHHH---------HHHH
T ss_conf 999999999967974444411788999999999998757884679999999999999982---7677---------8879
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999982597454045999999998609989840133477518878720025776778951474299999999998
Q 000655 208 EELFARLVVLLHDPLAREQQATQILMVLYYLSPLFPTNIDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAE 287 (1370)
Q Consensus 208 ~~llaRllvl~~~P~~~~~rg~~~L~lL~~l~~~ih~~l~~~W~~~IP~L~~~L~~~~~~~~~~~~~~~We~~Ll~fL~~ 287 (1370)
..++..++-.+.+|... --..++..+..+........ .+..+|.|+++|....+ ......--+.+-.+...
T Consensus 174 ~~ll~~l~~~L~~~~~~--vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~----~~~r~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 174 PSILTCLLPQLTSPRLA--VRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDS----MSTTRTYIQCIAAISRQ 244 (1230)
T ss_dssp HHHHHHHGGGGGCSSHH--HHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCS----SCSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHH
T ss_conf 99999999987599689--99999999999998568999---99999999998616775----56899999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 3401156708999999998422028999366779999999998721794--58999999998821878862114699999
Q 000655 288 SLDVVQETDWLISLGNAFTEQYVLYTPDDDHSALLHRCLGILLQKVADR--NYVCDKIDWMYKQANIAIPTNRLGLAKAM 365 (1370)
Q Consensus 288 sl~~i~d~~W~~~L~~el~~q~~~y~~~~~eK~fL~k~lG~~L~~~~~~--~~V~~~L~~ll~~~~~~~~~ereG~A~~~ 365 (1370)
.=+.+. .+...+...+.+.+. .+++.-+..-+.++|.....+... .++..-+..++....+.... . .
T Consensus 245 ~~~~~~--~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~-----~--~ 313 (1230)
T 1u6g_C 245 AGHRIG--EYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNY-----N--Y 313 (1230)
T ss_dssp SSGGGT--TSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------
T ss_pred HHHHHH--HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC-----C--C
T ss_conf 689899--889999999999866--8977899999999999999784877776899999999982789988-----8--7
Q ss_pred HHHHHHCHHHHHHHHHHH-HHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999621689999999998-8510022210011002565332005879999999899998309933579999776655567
Q 000655 366 GLVAASHLDAVLEMLKGI-LDNIGQSLFQRLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNML 444 (1370)
Q Consensus 366 G~~A~~Hld~VL~~L~~~-~~~~~~~~~~~~l~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~il~rve~~I~~~i~ 444 (1370)
.-. +...+..++. .... ..... ..+.+. +.....+|.+.+.+.+.++...| +.+.+.++.. +..+.
T Consensus 314 ~~d-----~~~~~~~~~~~~~~~-~~~~~---~~~~~~--~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~~~l-~~~l~ 380 (1230)
T 1u6g_C 314 DDE-----DEDENAMDADGGDDD-DQGSD---DEYSDD--DDMSWKVRRAAAKCLDAVVSTRH-EMLPEFYKTV-SPALI 380 (1230)
T ss_dssp ------------------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHHTTT-HHHHH
T ss_pred CCC-----CCCCCCCCCCCCCCC-HHHCC---CCCCCC--CCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHH-HHHHH
T ss_conf 644-----110112233446530-11001---366645--55677999999999999997466-6799999999-89999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCC-----------CHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 5531036746899999999999999874221-59976887-----------77999999999843588987788245667
Q 000655 445 SRLLHVRHHTAKQAVITAIDLLGRAVINAAE-NGASFPLK-----------KRDQLLDYILTLMGREENDSFADSSIELL 512 (1370)
Q Consensus 445 ~~~~~~kd~~~K~s~l~si~~i~~ai~~~~~-~~~~f~f~-----------~k~eLl~~l~~~i~~ep~~~l~s~~~~l~ 512 (1370)
.+ ....+..++.+.++++..+.+++..... ......++ .-++++..+...++.+. -
T Consensus 381 ~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~-----------~ 448 (1230)
T 1u6g_C 381 SR-FKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS-----------V 448 (1230)
T ss_dssp ST-TSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC-----------H
T ss_pred HH-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-----------H
T ss_conf 87-17986579999999999999972424343467520135645599999874699999999861377-----------8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 69999999954310358888846899998873513226899922179999999999999960158898774899999999
Q 000655 513 HTQALALSACTTLVTVEPKLTIETRNHVMKATLGFFALPNDPIDVVNPLIDNLITLLCAILLTSGEDGRSRADQLLHILR 592 (1370)
Q Consensus 513 ~vr~~al~a~t~L~~L~P~l~~e~~~~ll~~c~~~~~lp~~~~~l~~~~~~aL~~lL~~ll~~~~~d~~~~~~~L~~il~ 592 (1370)
++|+-++.++..+++.-|..-......++..++..+.-+.........+..++. .++...+. ......+..++.
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~----~~~~~~~~--~~~~~~l~~llp 522 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY----VILCNHSP--QVFHPHVQALVP 522 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHH----HHHHSSCG--GGGHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----HHHHHCCH--HHHHHHHHHHHH
T ss_conf 799999999999999761105777999999999997487885168999999999----99983898--878867999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 77788519258876579999999999988322013445788887651234444210357789976567712333455688
Q 000655 593 QIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRV 672 (1370)
Q Consensus 593 ~L~pwl~S~~~~eReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~Lv 672 (1370)
.+..++......-|..|+.++..+.+.+... ....+..| .+-+..++
T Consensus 523 ~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~---------------------------~~~~~~~~------~~~~~~ll 569 (1230)
T 1u6g_C 523 PVVACVGDPFYKITSEALLVTQQLVKVIRPL---------------------------DQPSSFDA------TPYIKDLF 569 (1230)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHCCS---------------------------SSCCCCCC------HHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC---------------------------CCCCCCCH------HHHHHHHH
T ss_conf 9999971424689999999999999871675---------------------------55653232------78999999
Q ss_pred HHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9852465--68993599989999999999882099988998886212225552200899997404999990689999999
Q 000655 673 IMYLPRC--ADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFNRIVS 750 (1370)
Q Consensus 673 g~l~prC--~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~i~~ 750 (1370)
..+...+ .|+++++|..|+.++..+..-.. . ... . .. ...+..+. +.+.. ........+...
T Consensus 570 ~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g---~--~~~-~---~~-~~~l~~L~---~~l~~---e~~r~~~~~al~ 633 (1230)
T 1u6g_C 570 TCTIKRLKAADIDQEVKERAISCMGQIICNLG---D--NLG-S---DL-PNTLQIFL---ERLKN---EITRLTTVKALT 633 (1230)
T ss_dssp HHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG---G--GCC-T---HH-HHHHHHHH---HHTTS---SSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC---C--HHH-H---HH-HHHHHHHH---HHHCC---CHHHHHHHHHHH
T ss_conf 99999873269988999999999999999827---0--324-4---38-89999999---88445---305999999999
Q ss_pred HHHCCC---C-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH--CCCHHHHH
Q ss_conf 997009---9-56899999999983258990128999999999986103654401063599999998731--17088999
Q 000655 751 SVCILL---T-KDELVATLHSCTTAICDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVH--ITDKHLRL 824 (1370)
Q Consensus 751 ~i~k~L---~-~~el~~li~~ll~~L~d~~~~~~~aA~~~L~~~l~~rG~~L~e~dV~~I~~~I~~~l~~--i~~~~~r~ 824 (1370)
.++... . ..-+...+-.+...+.+.+......|+..+..+++..+..+. ...+...+..-++. ..+.+...
T Consensus 634 ~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~---~~~v~~~l~~ll~ll~~~D~~~~~ 710 (1230)
T 1u6g_C 634 LIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT---AAMIDAVLDELPPLISESDMHVSQ 710 (1230)
T ss_dssp HHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCC---HHHHHHHHTTCGGGSCTTCHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99818564436888999999999999867888999999999999960433389---899999999987635754187899
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999741057335899998421454101000001599882158998300812089999999999705998567776
Q 000655 825 ETLGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDME 904 (1370)
Q Consensus 825 ~~l~ai~~La~~h~~~VV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l~~~vL~~LL~~L~~~p~~~e~~~ 904 (1370)
.++.++..+.+..+..+. . ....++..++..+......
T Consensus 711 ~~~~~L~~l~~~~~~~~~-~------------------------------------~~~~~l~~~~~~l~~~~~~----- 748 (1230)
T 1u6g_C 711 MAISFLTTLAKVYPSSLS-K------------------------------------ISGSILNELIGLVRSPLLQ----- 748 (1230)
T ss_dssp HHHHHHHHHTTSCGGGGG-G------------------------------------TTTTTHHHHHHHHTCTTCC-----
T ss_pred HHHHHHHHHHHHCCHHHH-H------------------------------------HHHHHHHHHHHHHCCCCCC-----
T ss_conf 999999999884912677-7------------------------------------6776899999997586210-----
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-HHH-HHHHHHH
Q ss_conf 68888888888755137999999999987148832188899852799999999765114689889987-479-9999999
Q 000655 905 KGDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHE-PLR-AILTSFQ 982 (1370)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Ll~aLL~ql~~~~~~~~~~~~~-P~~-~alealk 982 (1370)
...+.+...+...+...+.. ...|+.++-.|+..+.. ..++... ..+ .+-.++-
T Consensus 749 ---------------~~~~~~l~~~~~~l~~~~~~-----~~~~~~ll~~l~~~~~~----~~~~~~~~~~~~~~a~~i~ 804 (1230)
T 1u6g_C 749 ---------------GGALSAMLDFFQALVVTGTN-----NLGYMDLLRMLTGPVYS----QSTALTHKQSYYSIAKCVA 804 (1230)
T ss_dssp ---------------HHHHHHHHHHHHHHHTTCCT-----TCSHHHHHHHHSTTTTT----C----CCHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHCCCCC----CCCCCCCCHHHHHHHHHHH
T ss_conf ---------------57899999999999834788-----78899999998500357----8873200010489999999
Q ss_pred HHHHHHCCHHHHHHHHHC-CCCCC---HHHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 999861566899999750-99987---5648----998999996764109522799999994421145657616889999
Q 000655 983 AFCECVGDLEMRKILARD-GEQND---KEKW----INLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAAL 1054 (1370)
Q Consensus 983 ~ll~~~g~~~~~~~Le~~-~~W~~---~~~~----~~gV~lLAr~l~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~afl 1054 (1370)
.++...|.... ..++.- ..-.+ .+.- ..+++.+++.. ... + .+.+...+.+.++++.+..|..|...+
T Consensus 805 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~-~~~-~-~~~l~~~~~~~l~~~~~~Vr~aAa~aL 880 (1230)
T 1u6g_C 805 ALTRACPKEGP-AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHI-DLS-G-QLELKSVILEAFSSPSEEVKSAASYAL 880 (1230)
T ss_dssp HHHHHSCCCSH-HHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHS-CCC-S-CTHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHCCHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-CCC-C-CCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99984656668-9999999983788766799999999999861567-876-5-641899999984799778999999996
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 985106786110899999999853089993589998520157751----1244337779999994204688368999999
Q 000655 1055 SEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS----IHIHQYATQVLSVILALLDDLDESVQLTAVS 1130 (1370)
Q Consensus 1055 sELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lalrGLgnl~~----~kv~~~~~~lL~all~gL~d~d~~V~leAm~ 1130 (1370)
..+.... ++..+..+.+.+.+. +.+|...+++|..+.. .....+.+++++.++..+.+.++.+...+..
T Consensus 881 g~l~~~~------~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~ 953 (1230)
T 1u6g_C 881 GSISVGN------LPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAE 953 (1230)
T ss_dssp HHHHHHT------HHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHH
T ss_pred HHHHCCC------HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 8775269------998899999987266-032498899999998238766677669999999998733830446899998
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99998512896875025786785312867679947899999999985301788615879999995566798731589946
Q 000655 1131 CLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLS 1210 (1370)
Q Consensus 1131 ~L~~iL~~l~~~~~~~~~~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~ 1210 (1370)
+|+++..... .. +..++..++.+.++.+|..++..++.+...... .+...+...+.+++.+|+|++++
T Consensus 954 ~lg~l~~~~~----~~----l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~----~~~~~l~~~~~~ll~~l~d~~~~ 1021 (1230)
T 1u6g_C 954 CLGKLTLIDP----ET----LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQ----PIDPLLKNCIGDFLKTLEDPDLN 1021 (1230)
T ss_dssp HHHHHHHSSG----GG----THHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCC----THHHHHHHHSTTTHHHHSSSSTH
T ss_pred HHHHHHCCCH----HH----HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 8756650676----88----889999985699788999999999999706823----35898999899999864898587
Q ss_pred HHHHHHHHHHHHCH
Q ss_conf 99999999994301
Q 000655 1211 VRQACRNTLKQVAP 1224 (1370)
Q Consensus 1211 V~~ack~tL~~~a~ 1224 (1370)
|++++-.+|..++.
T Consensus 1022 vr~~a~~~l~~~~~ 1035 (1230)
T 1u6g_C 1022 VRRVALVTFNSAAH 1035 (1230)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999984
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=133.81 Aligned_cols=891 Identities=14% Similarity=0.094 Sum_probs=434.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 1334775188787200257767789514742999999999983401156--70899999999842202899936677999
Q 000655 246 IDLFWQDEIPKMKAYVSDTEDLKLDPSYQETWDDMIINFLAESLDVVQE--TDWLISLGNAFTEQYVLYTPDDDHSALLH 323 (1370)
Q Consensus 246 l~~~W~~~IP~L~~~L~~~~~~~~~~~~~~~We~~Ll~fL~~sl~~i~d--~~W~~~L~~el~~q~~~y~~~~~eK~fL~ 323 (1370)
....|..-+|.|.+.++++.+ + .-.+.-+..+.+.+....+ ......+...+...+. .+.+.-+.--.
T Consensus 127 ~~~~~~~llp~L~~~l~~~~~------~--~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~--~~~~~vR~~a~ 196 (1230)
T 1u6g_C 127 AANVCKKITGRLTSAIAKQED------V--SVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT--SPRLAVRKRTI 196 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSCCSC------H--HHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG--CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCC------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_conf 788999999999998757884------6--7999999999999998276778879999999999875--99689999999
Q ss_pred HHHHHHHHHCCCHH---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999987217945---89999999988218788621146999999996216-------899999999988510022210
Q 000655 324 RCLGILLQKVADRN---YVCDKIDWMYKQANIAIPTNRLGLAKAMGLVAASH-------LDAVLEMLKGILDNIGQSLFQ 393 (1370)
Q Consensus 324 k~lG~~L~~~~~~~---~V~~~L~~ll~~~~~~~~~ereG~A~~~G~~A~~H-------ld~VL~~L~~~~~~~~~~~~~ 393 (1370)
+++|.+.....+.. ++..-+..+.. . .+...|.+.+.++|..+... ++.++..
T Consensus 197 ~al~~l~~~~~~~~~~~~l~~l~~~L~~-~--~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~-------------- 259 (1230)
T 1u6g_C 197 IALGHLVMSCGNIVFVDLIEHLLSELSK-N--DSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPL-------------- 259 (1230)
T ss_dssp HHHHHHTTTC----CTTHHHHHHHHHHH-T--CSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHH--------------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_conf 9999999856899999999999998616-7--7556899999999999998689899889999999--------------
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01100256533200587999999989999830993357999977665556755310367468999999999999998742
Q 000655 394 RLLSFFSNSYRMEESDDIHAALALMYGYAAKYAPSTVIEARIDALVGTNMLSRLLHVRHHTAKQAVITAIDLLGRAVINA 473 (1370)
Q Consensus 394 ~~l~~~k~~~~~~e~~~~ks~l~l~YG~va~~ap~~~il~rve~~I~~~i~~~~~~~kd~~~K~s~l~si~~i~~ai~~~ 473 (1370)
++..+.+.. +.+|.+.+.+.|.++..++.+ +.+.++. ++..++.. . ..|+... +-..-.. .......
T Consensus 260 -ll~~l~d~~-----~~vR~~a~~~l~~l~~~~~~~-~~~~l~~-li~~ll~~-l-~~d~~~~--~~~d~~~-~~~~~~~ 326 (1230)
T 1u6g_C 260 -VVKFCNVDD-----DELREYCIQAFESFVRRCPKE-VYPHVST-IINICLKY-L-TYDPNYN--YDDEDED-ENAMDAD 326 (1230)
T ss_dssp -HHHHHSSCC-----TTTHHHHHHHHHHHHHCTTCC-CHHHHHH-HHHHHTTC-C-CCC---------------------
T ss_pred -HHHHHCCCC-----HHHHHHHHHHHHHHHHHCHHH-HHHHHHH-HHHHHHHH-H-CCCCCCC--CCCCCCC-CCCCCCC
T ss_conf -999866897-----789999999999999978487-7776899-99999998-2-7899888--7644110-1122334
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HCCCCCC
Q ss_conf 215997688777999999999843588987788245667699999999543103588888468999988735-1322689
Q 000655 474 AENGASFPLKKRDQLLDYILTLMGREENDSFADSSIELLHTQALALSACTTLVTVEPKLTIETRNHVMKATL-GFFALPN 552 (1370)
Q Consensus 474 ~~~~~~f~f~~k~eLl~~l~~~i~~ep~~~l~s~~~~l~~vr~~al~a~t~L~~L~P~l~~e~~~~ll~~c~-~~~~lp~ 552 (1370)
......+.. - -.+. .+. +. .-.+|..|..++..+....|. .-..++...+ .+.....
T Consensus 327 ~~~~~~~~~------~---~~~~-~~~-d~-------~~~vR~~A~~~l~~l~~~~~~----~~~~~~~~l~~~l~~~l~ 384 (1230)
T 1u6g_C 327 GGDDDDQGS------D---DEYS-DDD-DM-------SWKVRRAAAKCLDAVVSTRHE----MLPEFYKTVSPALISRFK 384 (1230)
T ss_dssp -----------------------------C-------TTHHHHHHHHHHHHHHTTCCT----THHHHHTTTHHHHHSTTS
T ss_pred CCCCCHHHC------C---CCCC-CCC-CC-------CHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHCC
T ss_conf 465301100------1---3666-455-56-------779999999999999974666----799999999899998717
Q ss_pred CCCC-CHHHHHHHHHHHHHHHHHHCCC-CCC-------CCHHHHH----HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9922-1799999999999999601588-987-------7489999----9999777885192588765799999999999
Q 000655 553 DPID-VVNPLIDNLITLLCAILLTSGE-DGR-------SRADQLL----HILRQIDQYVSSPVEYQRRRSCLAVYEMLLK 619 (1370)
Q Consensus 553 ~~~~-l~~~~~~aL~~lL~~ll~~~~~-d~~-------~~~~~L~----~il~~L~pwl~S~~~~eReRA~~~~~~lL~~ 619 (1370)
.+.+ .-...+.++..++..+-...++ ++. .....+. .+++.+.+.++++....|+.++.....+...
T Consensus 385 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 385 EREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98657999999999999997242434346752013564559999987469999999986137787999999999999997
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHH
Q ss_conf 88322013445788887651234444210357789976567712333455688985246568993--5999899999999
Q 000655 620 FRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGNRVIMYLPRCADTDS--EVRKISAQILDQL 697 (1370)
Q Consensus 620 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~Lvg~l~prC~D~~~--~iR~~A~~~i~~L 697 (1370)
... .+. ..+..++..+.....|++. .+|..+...+..+
T Consensus 465 ~~~------------------------------~l~----------~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~ 504 (1230)
T 1u6g_C 465 LPG------------------------------ALT----------QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVI 504 (1230)
T ss_dssp STT------------------------------TTG----------GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHH
T ss_pred CHH------------------------------HHH----------HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 611------------------------------057----------7799999999999748788516899999999999
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHC-HHHHHHHCCCCCCCHHHH-------HHHHHHHHHC-------CCCHHHHH
Q ss_conf 99882099988998886212225552200-899997404999990689-------9999999970-------09956899
Q 000655 698 FSISLSLPRPVGSSSGIDLELSYGALSSL-EDVIAILRSDASIDPSEV-------FNRIVSSVCI-------LLTKDELV 762 (1370)
Q Consensus 698 l~I~l~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~l~~~~~~~~~~~-------~~~i~~~i~k-------~L~~~el~ 762 (1370)
+.-. +. + .. ..-+..+ .-....+ .+ .. ..+ +..+++.++. .+ ..-+.
T Consensus 505 ~~~~-------~~--~-~~---~~~l~~llp~L~~~l-~d--~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~-~~~~~ 566 (1230)
T 1u6g_C 505 LCNH-------SP--Q-VF---HPHVQALVPPVVACV-GD--PF-YKITSEALLVTQQLVKVIRPLDQPSSFDA-TPYIK 566 (1230)
T ss_dssp HHSS-------CG--G-GG---HHHHTTTHHHHHHHH-TC--SS-HHHHHHHHHHHHHHHHHHCCSSSCCCCCC-HHHHH
T ss_pred HHHC-------CH--H-HH---HHHHHHHHHHHHHHH-CC--CC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCH-HHHHH
T ss_conf 9838-------98--8-78---867999999999997-14--24-68999999999999987167555653232-78999
Q ss_pred HHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC--
Q ss_conf 9999999832--589901289999999999861036544010635999999987311708899999999999741057--
Q 000655 763 ATLHSCTTAI--CDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLETLGAISCLAENTN-- 838 (1370)
Q Consensus 763 ~li~~ll~~L--~d~~~~~~~aA~~~L~~~l~~rG~~L~e~dV~~I~~~I~~~l~~i~~~~~r~~~l~ai~~La~~h~-- 838 (1370)
.++..++..+ .|.......+|...+..+.+.-|..+.. .++.+++.+...+. .+..|..+.+++..++....
T Consensus 567 ~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~-~~~~~l~~L~~~l~---~e~~r~~~~~al~~i~~~~~~~ 642 (1230)
T 1u6g_C 567 DLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGS-DLPNTLQIFLERLK---NEITRLTTVKALTLIAGSPLKI 642 (1230)
T ss_dssp HHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCT-HHHHHHHHHHHHTT---SSSHHHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999987326998899999999999999982703244-38899999998844---5305999999999998185644
Q ss_pred ------CHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHH-----HHHHHHCCC--CCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf ------33589999842145410100000159988215-----899830081--20899999999997059985677766
Q 000655 839 ------SKIVFNEVLATAGKDIVTKDISRLRGGWPMQD-----AFHAFSQHA--VLSFLFLEHLISALNQTPFVKGDMEK 905 (1370)
Q Consensus 839 ------~~VV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~-----~W~al~~d~--~l~~~vL~~LL~~L~~~p~~~e~~~~ 905 (1370)
..++ ..+... +..+-+--+ .+..+.... .+. .+.+...+....+.-++.
T Consensus 643 ~~~~~~~~i~-~~L~~~------------l~~~~~~~r~~a~~al~~l~~~~~~~~~---~~~v~~~l~~ll~ll~~~-- 704 (1230)
T 1u6g_C 643 DLRPVLGEGV-PILASF------------LRKNQRALKLGTLSALDILIKNYSDSLT---AAMIDAVLDELPPLISES-- 704 (1230)
T ss_dssp CCHHHHHHHH-HHHHHH------------TTSCCHHHHHHHHHHHHHHHHHCCTTCC---HHHHHHHHTTCGGGSCTT--
T ss_pred CHHHHHHHHH-HHHHHH------------HHHCCHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHCCCC--
T ss_conf 3688899999-999999------------9867888999999999999960433389---899999999987635754--
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH--HHHHHHHHHH
Q ss_conf 88888888887551379999999999871488321888998527999999997651146898899874--7999999999
Q 000655 906 GDYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP--LRAILTSFQA 983 (1370)
Q Consensus 906 ~~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Ll~aLL~ql~~~~~~~~~~~~~P--~~~alealk~ 983 (1370)
+ ......+..+|..+....+ ..+...++.++-.++..+.... +.. ....+..++.
T Consensus 705 ---------D---~~~~~~~~~~L~~l~~~~~----~~~~~~~~~~l~~~~~~l~~~~-------~~~~~~~~l~~~~~~ 761 (1230)
T 1u6g_C 705 ---------D---MHVSQMAISFLTTLAKVYP----SSLSKISGSILNELIGLVRSPL-------LQGGALSAMLDFFQA 761 (1230)
T ss_dssp ---------C---HHHHHHHHHHHHHHTTSCG----GGGGGTTTTTHHHHHHHHTCTT-------CCHHHHHHHHHHHHH
T ss_pred ---------H---HHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHH
T ss_conf ---------1---8789999999999988491----2677767768999999975862-------105789999999999
Q ss_pred HHHHHC-CHHHHHHHHHC-CCCCC-HH--HHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHCCC--CCCCCHHHHHH
Q ss_conf 998615-66899999750-99987-56--4899899999676---4109522799999994421145--65761688999
Q 000655 984 FCECVG-DLEMRKILARD-GEQND-KE--KWINLIGDVAGCV---SIKRPKEVQTICLILTKSINRQ--QRFQREAAAAA 1053 (1370)
Q Consensus 984 ll~~~g-~~~~~~~Le~~-~~W~~-~~--~~~~gV~lLAr~l---~~~~~~~~~~i~~~L~~~L~s~--~~~~Ri~a~af 1053 (1370)
+..... .......++.- ..|.. .. .+.+....+++++ +...++....++..+...++++ .+..+..+..+
T Consensus 762 l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 841 (1230)
T 1u6g_C 762 LVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLS 841 (1230)
T ss_dssp HHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 98347887889999999850035788732000104899999999998465666899999999837887667999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99851067861108999999998530899935899985201577511244337779999994204688368999999999
Q 000655 1054 LSEFVRYSGGFDSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQYATQVLSVILALLDDLDESVQLTAVSCLL 1133 (1370)
Q Consensus 1054 lsELl~~~~~~~~l~~~~i~~L~~~l~D~~~~VR~lalrGLgnl~~~kv~~~~~~lL~all~gL~d~d~~V~leAm~~L~ 1133 (1370)
+.|+........ . ..+...+...+.|+++.||..+..+||.++.+... ..++.++.++.+. ...+..++.+|+
T Consensus 842 l~~~g~~~~~~~-~-~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~----~~lp~ll~~l~~~-~~~~~~~l~al~ 914 (1230)
T 1u6g_C 842 LGEVGHHIDLSG-Q-LELKSVILEAFSSPSEEVKSAASYALGSISVGNLP----EYLPFVLQEITSQ-PKRQYLLLHSLK 914 (1230)
T ss_dssp HHHHHHHSCCCS-C-THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHSC-GGGHHHHHHHHH
T ss_pred HHHHCCCCCCCC-C-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_conf 998615678765-6-41899999984799778999999996877526999----8899999987266-032498899999
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHCCCCCHHHH
Q ss_conf 985128968750257867853128676799478999999999853017886158799999955667-9873158994699
Q 000655 1134 TILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPR-LILHIYDDDLSVR 1212 (1370)
Q Consensus 1134 ~iL~~l~~~~~~~~~~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~Lvp-LLlHL~D~~~~V~ 1212 (1370)
.++...+...+.++...|...+....+++.+.+|..+...+|.+..... ..++| |.-++.|+++.+|
T Consensus 915 e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~------------~~l~p~l~~~l~~~~~~~R 982 (1230)
T 1u6g_C 915 EIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP------------ETLLPRLKGYLISGSSYAR 982 (1230)
T ss_dssp HHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG------------GGTHHHHTTTSSSSCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH------------HHHHHHHHHHHCCCCHHHH
T ss_conf 9982387666776699999999987338304468999988756650676------------8888999998569978899
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999999430113345554310456776888985899999999999959421999999998752099936779999999
Q 000655 1213 QACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFS 1292 (1370)
Q Consensus 1213 ~ack~tL~~~a~lL~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aAa~fi 1292 (1370)
..|-.++..+... ..-.++.. +..++...+..++++...||++|+.-+
T Consensus 983 ~~~~~~l~~~~~~-----------------~~~~~~~~---------------l~~~~~~ll~~l~d~~~~vr~~a~~~l 1030 (1230)
T 1u6g_C 983 SSVVTAVKFTISD-----------------HPQPIDPL---------------LKNCIGDFLKTLEDPDLNVRRVALVTF 1030 (1230)
T ss_dssp HHHHHHTGGGCCS-----------------SCCTHHHH---------------HHHHSTTTHHHHSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-----------------CCHHHHHH---------------HHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999999999706-----------------82335898---------------999899999864898587999999999
Q ss_pred HHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCCC------------------HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 653014813554101699999999998532998------------------03688999999999987101444556654
Q 000655 1293 SSILCLCDDQHILSLFYTQVFGLLVVKLSQSAD------------------AIVRATCSSSLGWLLKSINSHSWRSTRLE 1354 (1370)
Q Consensus 1293 G~l~~~~~~~~~~~~~~e~l~~~L~~~Ll~Dpd------------------p~VR~~Aa~aL~~l~k~~~~~~~~~~~~~ 1354 (1370)
|..+++.+...... ...+...|.. ..+.++ -.||..|-++++.+.+++........-++
T Consensus 1031 ~~~~~~~~~~~~~~--l~~~lp~l~~-~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~ 1107 (1230)
T 1u6g_C 1031 NSAAHNKPSLIRDL--LDTVLPHLYN-ETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLN 1107 (1230)
T ss_dssp HHHHHHCGGGTGGG--HHHHHHHHHH-TTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHH
T ss_pred HHHHHCCHHHHHHH--HHHHHHHHHH-HHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99984285768977--9889899998-83026876013305896023677489999999999999998887478999999
Q ss_pred C
Q ss_conf 3
Q 000655 1355 R 1355 (1370)
Q Consensus 1355 ~ 1355 (1370)
+
T Consensus 1108 ~ 1108 (1230)
T 1u6g_C 1108 H 1108 (1230)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=133.70 Aligned_cols=262 Identities=12% Similarity=0.092 Sum_probs=163.4
Q ss_pred CHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCCC
Q ss_conf 16889999985106786-110899999999853089993-5899985201577511---244337779999994204688
Q 000655 1047 REAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSDESP-TVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDLD 1121 (1370)
Q Consensus 1047 Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D~~~-~VR~lalrGLgnl~~~---kv~~~~~~lL~all~gL~d~d 1121 (1370)
|..++..++.++..... .....+.++..+...+++.++ .||.-++..+++++.. ....|.+.+++.++..+.+.+
T Consensus 573 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~ 652 (861)
T 2bpt_A 573 QSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVD 652 (861)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999998556347899999999999974678875799999999999999766099999999999998865566
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 368999999999985128968750257867853128676799--478999999999853017886158799999955667
Q 000655 1122 ESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMN--VKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPR 1199 (1370)
Q Consensus 1122 ~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~lrpffede~--~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~Lvp 1199 (1370)
..++..++..++.+....+. .+.++...+...+...+++++ .++|..++..+|+++...+. .-.++.+++...+..
T Consensus 653 ~~vr~~a~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~-~~~~~l~~~l~~l~~ 730 (861)
T 2bpt_A 653 SPVSITAVGFIADISNSLEE-DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA-DFIPYLNDIMALCVA 730 (861)
T ss_dssp SHHHHHHHHHHHHHHHHTGG-GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCH-HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 78999999999999987454-0311199999999997278655676659999999999998405-089999999999999
Q ss_pred HHHHCC---CCC-----HHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 987315---899-----469999999999430113345554310456776888985899999999999959421999999
Q 000655 1200 LILHIY---DDD-----LSVRQACRNTLKQVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMG 1271 (1370)
Q Consensus 1200 LLlHL~---D~~-----~~V~~ack~tL~~~a~lL~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l~ 1271 (1370)
.+-+-. |++ ..|+.++-.++..++.-++-. ...| ..++..+...+..
T Consensus 731 ~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~-~~~~-------------~~~~~~i~~~l~~----------- 785 (861)
T 2bpt_A 731 AQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK-PEAL-------------FPYVGTIFQFIAQ----------- 785 (861)
T ss_dssp HHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHH-------------GGGHHHHHHHHHH-----------
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHH-------------HHHHHHHHHHHHH-----------
T ss_conf 97367899975889999999999999999999998267-7889-------------9999999999999-----------
Q ss_pred HHHHHHCC---C-CHHHHHHHHHHHHHHHCCC-CHHHHHHCCHH-HHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHH
Q ss_conf 99875209---9-9367799999996530148-13554101699-99999999853--29980368899999999998
Q 000655 1272 STIQAFEA---P-WPIIQANAIYFSSSILCLC-DDQHILSLFYT-QVFGLLVVKLS--QSADAIVRATCSSSLGWLLK 1341 (1370)
Q Consensus 1272 ~~l~y~kS---~-~~~IR~aAa~fiG~l~~~~-~~~~~~~~~~e-~l~~~L~~~Ll--~Dpdp~VR~~Aa~aL~~l~k 1341 (1370)
.+.+ + ...+|.+|+..+|.+...+ +.+..... . .++..|...+. ++.+..|+..|+.|++.+.+
T Consensus 786 ----~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~--~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 786 ----VAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY--GQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp ----HHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGT--TCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred ----HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH--HCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf ----8748555786999999999999999882882488987--26799999998853557887789999999999998
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=127.02 Aligned_cols=231 Identities=12% Similarity=0.063 Sum_probs=122.9
Q ss_pred HHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 5899985201577511---24433777999999420468-8368999999999985128968750257867853128676
Q 000655 1085 TVRGLCLRGLVQIPSI---HIHQYATQVLSVILALLDDL-DESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQV 1160 (1370)
Q Consensus 1085 ~VR~lalrGLgnl~~~---kv~~~~~~lL~all~gL~d~-d~~V~leAm~~L~~iL~~l~~~~~~~~~~~i~~~lrpffe 1160 (1370)
.||.-+++.+++++.. +...|.+.+++.++.++.+. +..|+..|+.+++.+....+ ..+.++...+...+...+.
T Consensus 623 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~ 701 (876)
T 1qgr_A 623 GVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPFCDEVMQLLLENLG 701 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_conf 850899999999999987609999999999999987586508799999999999999887-8546459999999999748
Q ss_pred C--CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC----CH-------HHHHHHHHHHHHHCHHHH
Q ss_conf 7--9947899999999985301788615879999995566798731589----94-------699999999994301133
Q 000655 1161 S--MNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDD----DL-------SVRQACRNTLKQVAPFME 1227 (1370)
Q Consensus 1161 d--e~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~----~~-------~V~~ack~tL~~~a~lL~ 1227 (1370)
+ .+.++|..++.++|.++...++.. ..+..++.. .++-.+++. ++ .++.++-.++..+...++
T Consensus 702 ~~~~~~~~~~~~~~~l~~i~~~~g~~~-~~~l~~~~~---~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~ 777 (876)
T 1qgr_A 702 NENVHRSVKPQILSVFGDIALAIGGEF-KKYLEVVLN---TLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLK 777 (876)
T ss_dssp CTTSCGGGHHHHHHHHHHHHHHHGGGG-GGGHHHHHH---HHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHH---HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 712338763999999999999703527-999999999---9999985558999758899999999999999999999974
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCH-HHH
Q ss_conf 45554310456776888985899999999999959421999999998752099--936779999999653014813-554
Q 000655 1228 IGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAP--WPIIQANAIYFSSSILCLCDD-QHI 1304 (1370)
Q Consensus 1228 ~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l~~~l~y~kS~--~~~IR~aAa~fiG~l~~~~~~-~~~ 1304 (1370)
......+.+. . .+..++..+.. ++. ....++ +..+|.+|+..+|.+....+. +..
T Consensus 778 ~~~~~~~~~~-----~--~~~~~~~~i~~------------~l~---~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 835 (876)
T 1qgr_A 778 GDQENVHPDV-----M--LVQPRVEFILS------------FID---HIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLK 835 (876)
T ss_dssp CSSSSCCGGG-----G--GSGGGHHHHHH------------HHH---HHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred CCCCCCCCHH-----H--HHHHHHHHHHH------------HHH---HHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 5755555438-----8--99999999999------------999---986588888899999999999999882848899
Q ss_pred HHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 101699999999998532998036889999999999871
Q 000655 1305 LSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1343 (1370)
Q Consensus 1305 ~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1343 (1370)
.......+..-+.. .++|+++.||..|+.|+|.+.+.-
T Consensus 836 ~~~~~~~i~~ll~~-~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 836 LVEARPMIHELLTE-GRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHTSHHHHHHHHH-HHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99704899999998-754688768999999999999753
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=123.86 Aligned_cols=529 Identities=13% Similarity=0.084 Sum_probs=294.9
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99777885192588765799999999999883220134457888876512344442103577899765677123334556
Q 000655 591 LRQIDQYVSSPVEYQRRRSCLAVYEMLLKFRTLCVIGYCALGCHGSCTHIKQIDRAVLGNFSNLPSAYVLPSREALCLGN 670 (1370)
Q Consensus 591 l~~L~pwl~S~~~~eReRA~~~~~~lL~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ps~f~~~~~~~~~lG~ 670 (1370)
+..+...+.|+....|..|+..+..+....-. . .....
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~---------------------------------------~---~~~~~ 49 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGV---------------------------------------E---RTRSE 49 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCH---------------------------------------H---HHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCH---------------------------------------H---HHHHH
T ss_conf 99999985062199999999719999998697---------------------------------------9---89998
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHH---H
Q ss_conf 8898524656899359998999999999988209998899888621222555220089999740499999068999---9
Q 000655 671 RVIMYLPRCADTDSEVRKISAQILDQLFSISLSLPRPVGSSSGIDLELSYGALSSLEDVIAILRSDASIDPSEVFN---R 747 (1370)
Q Consensus 671 Lvg~l~prC~D~~~~iR~~A~~~i~~Ll~I~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~---~ 747 (1370)
++..+.- +.|++.++|..+.+++..+... .+.. ++.... ... +. .+..+ .+ ..+-. .
T Consensus 50 l~~~L~~-~~d~~~~vr~~~~~~L~~~~~~-------~~~~-~~~~~l-l~~---L~----~l~~~--~~-~~vR~~a~~ 109 (588)
T 1b3u_A 50 LLPFLTD-TIYDEDEVLLALAEQLGTFTTL-------VGGP-EYVHCL-LPP---LE----SLATV--EE-TVVRDKAVE 109 (588)
T ss_dssp HHHHHHH-TCCCCHHHHHHHHHHHTTCSGG-------GTSG-GGGGGG-HHH---HH----HHTTS--SC-HHHHHHHHH
T ss_pred HHHHHHH-HCCCCHHHHHHHHHHHHHHHHC-------CCCH-HHHHHH-HHH---HH----HHHHC--CH-HHHHHHHHH
T ss_conf 9988987-5578589999999999778760-------5859-899998-999---99----98747--60-799999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 9999970099568999999999832-589901289999999999861036544010635999999987311708899999
Q 000655 748 IVSSVCILLTKDELVATLHSCTTAI-CDRTKQSAEGAIQAVVEFVTKRGNELSETDVSRTTQSLLSAAVHITDKHLRLET 826 (1370)
Q Consensus 748 i~~~i~k~L~~~el~~li~~ll~~L-~d~~~~~~~aA~~~L~~~l~~rG~~L~e~dV~~I~~~I~~~l~~i~~~~~r~~~ 826 (1370)
....++..+++.++...+...+..+ .+.......+|+.++..+...-+... .+.++..+. ++....++.+|..+
T Consensus 110 ~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~----~~~l~~~l~-~l~~d~~~~VR~~a 184 (588)
T 1b3u_A 110 SLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV----KAELRQYFR-NLCSDDTPMVRRAA 184 (588)
T ss_dssp HHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----HHHHHHHHH-HHHTCSCHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHH-HHHCCCCHHHHHHH
T ss_conf 9999999799999999999999998507771799999999999998569999----999999999-98489978899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999974105733589999842145410100000159988215899830081208999999999970599856777668
Q 000655 827 LGAISCLAENTNSKIVFNEVLATAGKDIVTKDISRLRGGWPMQDAFHAFSQHAVLSFLFLEHLISALNQTPFVKGDMEKG 906 (1370)
Q Consensus 827 l~ai~~La~~h~~~VV~~~Ll~~~~~~~~~~~~~~L~~~lP~d~~W~al~~d~~l~~~vL~~LL~~L~~~p~~~e~~~~~ 906 (1370)
.+++..++.....+.... .++..++..++. ++
T Consensus 185 ~~~l~~l~~~~~~~~~~~---------------------------------------~l~~~l~~~~~d-----~~---- 216 (588)
T 1b3u_A 185 ASKLGEFAKVLELDNVKS---------------------------------------EIIPMFSNLASD-----EQ---- 216 (588)
T ss_dssp HHHHHHHHHTSCHHHHHH---------------------------------------THHHHHHHHHTC-----SC----
T ss_pred HHHHHHHHHHHCHHHHHH---------------------------------------HHHHHHHHHHCC-----CC----
T ss_conf 998999999816776799---------------------------------------999999988249-----92----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH-HH-HHHHHHHHH
Q ss_conf 8888888887551379999999999871488321888998527999999997651146898899874-79-999999999
Q 000655 907 DYSSHSADTWIDDDILQAAILALTAFFRGGGKVGKKAVEKSYAPVLAALTLQLGSCHGLASSGQHEP-LR-AILTSFQAF 984 (1370)
Q Consensus 907 ~~~~~~~~~~~~~~~~laA~~aL~Ell~~~~~~~~~av~~~fp~Ll~aLL~ql~~~~~~~~~~~~~P-~~-~alealk~l 984 (1370)
...-.+|..+|..+...-+ -........| ++.++.. ..++ .| .+.+++..+
T Consensus 217 ------------~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~-----~l~~~~~--------d~~~~vR~~a~~~l~~l 269 (588)
T 1b3u_A 217 ------------DSVRLLAVEACVNIAQLLP--QEDLEALVMP-----TLRQAAE--------DKSWRVRYMVADKFTEL 269 (588)
T ss_dssp ------------HHHHTTHHHHHHHHHHHSC--HHHHHHHTHH-----HHHHHHT--------CSSHHHHHHHHHTHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHCC--HHHHHHHHHH-----HHHHHCC--------CCCHHHHHHHHHHHHHH
T ss_conf ------------8899989999999998579--8888878999-----9999806--------99778999999999999
Q ss_pred HHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 98615668999997509998756489989999967641095227999999944211456576168899999851067861
Q 000655 985 CECVGDLEMRKILARDGEQNDKEKWINLIGDVAGCVSIKRPKEVQTICLILTKSINRQQRFQREAAAAALSEFVRYSGGF 1064 (1370)
Q Consensus 985 l~~~g~~~~~~~Le~~~~W~~~~~~~~gV~lLAr~l~~~~~~~~~~i~~~L~~~L~s~~~~~Ri~a~aflsELl~~~~~~ 1064 (1370)
....|. + .....++..+...+++++...|..|+..+.++.......
T Consensus 270 ~~~~~~----------------~------------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 270 QKAVGP----------------E------------------ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHCH----------------H------------------HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHCC----------------C------------------CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH
T ss_conf 998195----------------2------------------105589999999858995899999998799999972744
Q ss_pred ---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf ---108999999998530899935899985201577511-2443377799999942046883689999999999851289
Q 000655 1065 ---DSLLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSI-HIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSS 1140 (1370)
Q Consensus 1065 ---~~l~~~~i~~L~~~l~D~~~~VR~lalrGLgnl~~~-kv~~~~~~lL~all~gL~d~d~~V~leAm~~L~~iL~~l~ 1140 (1370)
....+.++..+...++|+++.||..++..|+.++.. ......+.+++.+...+.|.+++|+..++.+|+.+....+
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 395 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 43657999999999998619988999999999999988862767888899999998379836899999998999997549
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 68750257867853128676799478999999999853017886158799999955667987315899469999999999
Q 000655 1141 KDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQREAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLK 1220 (1370)
Q Consensus 1141 ~~~~~~~~~~i~~~lrpffede~~~vR~aAi~LfG~L~~~~~~~~~~~~~eQv~~~LvpLLlHL~D~~~~V~~ack~tL~ 1220 (1370)
.... ...+...+..+.+|.+..+|.+++..+|.++...+. +.+.+++ ++.++-.|+|+++.|+.++-.++.
T Consensus 396 ~~~~---~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l---~~~l~~~l~d~~~~Vr~~a~~~l~ 466 (588)
T 1b3u_A 396 IRQL---SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDEKL---NSLCMAWLVDHVYAIREAATSNLK 466 (588)
T ss_dssp HHHH---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCHHH---HHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCH---HHHHHHH---HHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 8989---888899999983599813999999999999988098---9899999---999998825981999999999999
Q ss_pred HHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 43011334555431045677688898589999999999995942199999999875209993677999999965301481
Q 000655 1221 QVAPFMEIGVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSILCLCD 1300 (1370)
Q Consensus 1221 ~~a~lL~~~l~~l~~~~~~~~~~~l~~~~f~~~l~~~L~~~~~~~~~~~l~~~l~y~kS~~~~IR~aAa~fiG~l~~~~~ 1300 (1370)
.++..++.. .+...+ +.......+++...+|.+|+..+|.+....+
T Consensus 467 ~l~~~~~~~-------------------~~~~~l---------------lp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 467 KLVEKFGKE-------------------WAHATI---------------IPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp HHHHHHCHH-------------------HHHHHT---------------HHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCH-------------------HHHHHH---------------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999996844-------------------578889---------------9999998318987999999999999997669
Q ss_pred HHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 3554101699999999998532998036889999999999871
Q 000655 1301 DQHILSLFYTQVFGLLVVKLSQSADAIVRATCSSSLGWLLKSI 1343 (1370)
Q Consensus 1301 ~~~~~~~~~e~l~~~L~~~Ll~Dpdp~VR~~Aa~aL~~l~k~~ 1343 (1370)
.+. ..+.+...|.. +++|+++.||..|..+++.+.+..
T Consensus 513 ~~~----~~~~~~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 513 QDI----TTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp HHH----HHHHTHHHHHH-GGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred HHH----HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 899----99999999986-678998627999999999999986
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=117.13 Aligned_cols=211 Identities=10% Similarity=0.042 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCC--CCHHH
Q ss_conf 98999996764109522799999994421145-657616889999985106786-110899999999853089--99358
Q 000655 1011 NLIGDVAGCVSIKRPKEVQTICLILTKSINRQ-QRFQREAAAAALSEFVRYSGG-FDSLLEQMVEALCRHVSD--ESPTV 1086 (1370)
Q Consensus 1011 ~gV~lLAr~l~~~~~~~~~~i~~~L~~~L~s~-~~~~Ri~a~aflsELl~~~~~-~~~l~~~~i~~L~~~l~D--~~~~V 1086 (1370)
..++.++..+-..-.+++..++..+.+.++.. +..-|..|+..++.+...... .....+.++..+.+.+.+ .+..+
T Consensus 630 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 709 (876)
T 1qgr_A 630 MAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSV 709 (876)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999987609999999999999987586508799999999999999887854645999999999974871233876
Q ss_pred HHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHCCCCC----H-------HHHHHHHHHHHHHHCCCCC---------CC
Q ss_conf 9998520157751---1244337779999994204688----3-------6899999999998512896---------87
Q 000655 1087 RGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLD----E-------SVQLTAVSCLLTILKSSSK---------DA 1143 (1370)
Q Consensus 1087 R~lalrGLgnl~~---~kv~~~~~~lL~all~gL~d~d----~-------~V~leAm~~L~~iL~~l~~---------~~ 1143 (1370)
|..++..+|+++. .....|.+.+++.+..++.+.. + .++..++.++..++..++. ..
T Consensus 710 ~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~ 789 (876)
T 1qgr_A 710 KPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVML 789 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGG
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 39999999999997035279999999999999985558999758899999999999999999999974575555543889
Q ss_pred CCHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHH
Q ss_conf 5025786785312867679--947899999999985301788-6158799999955667987-31589946999999999
Q 000655 1144 VEPILLNLSVRLRNLQVSM--NVKMRRNAFAAFGALSNFGVG-SQREAFLEQIHAMLPRLIL-HIYDDDLSVRQACRNTL 1219 (1370)
Q Consensus 1144 ~~~~~~~i~~~lrpffede--~~~vR~aAi~LfG~L~~~~~~-~~~~~~~eQv~~~LvpLLl-HL~D~~~~V~~ack~tL 1219 (1370)
+.+++..+..-+....+|+ ++.+|.+|+..+|+++...++ .....+.+++ +.+|+- .+.|+++.|++++.+++
T Consensus 790 ~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~---i~~ll~~~l~~~~~~~r~~a~~a~ 866 (876)
T 1qgr_A 790 VQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPM---IHELLTEGRRSKTNKAKTLARWAT 866 (876)
T ss_dssp SGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHH---HHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHH---HHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999999865888888999999999999998828488999970489---999999875468876899999999
Q ss_pred HHHCH
Q ss_conf 94301
Q 000655 1220 KQVAP 1224 (1370)
Q Consensus 1220 ~~~a~ 1224 (1370)
+.++.
T Consensus 867 ~~~~~ 871 (876)
T 1qgr_A 867 KELRK 871 (876)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99997
Done!