Query 000659
Match_columns 1368
No_of_seqs 493 out of 3284
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 16:57:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000659.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_431-435//hhsearch_pdb/000659hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 430.0 20.6 264 968-1251 40-321 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 427.6 17.6 263 969-1251 13-291 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 423.1 19.7 258 969-1246 26-303 (308)
4 4ase_A Vascular endothelial gr 1.0 1 1 415.8 18.0 274 959-1251 54-349 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 413.3 20.9 265 967-1252 34-303 (307)
6 4b9d_A Serine/threonine-protei 1.0 1 1 407.1 15.8 254 968-1245 23-279 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 405.4 18.1 253 968-1245 150-403 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 403.0 17.2 252 969-1245 74-326 (346)
9 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 398.6 13.5 252 969-1245 32-287 (311)
10 3hmm_A TGF-beta receptor type- 1.0 1 1 398.5 17.3 274 969-1250 3-298 (303)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=430.04 Aligned_cols=264 Identities=27% Similarity=0.454 Sum_probs=222.9
Q ss_pred HCCCCEEEEEEECCCEEEEEEEEC------CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEE
Q ss_conf 099215467710483799999952------89789999910235223699999999876214466112541343036358
Q 000659 968 TGNFDASRILGEGGFGLVYSGVLD------DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARC 1041 (1368)
Q Consensus 968 t~nFei~eiLGkGaFGtVYKA~lk------dGk~VAVKvLk~~s~~~~keFlrEIeILkrLrHPNIVkLiGv~~e~~~l~ 1041 (1368)
.++|.+.+.||+|+||.||+|.+. +++.||||+++..+....++|.+|+++|++++|+|||+++|+|.+.+..|
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 89928877971477848998998786657789699999977579799999999999998589989996989999899899
Q ss_pred EEEEECCCCCHHHCCCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 99952489981000236656-----------7888876799999999999984321069997323577666812137887
Q 000659 1042 LVYELIPNGSVESHLHGVDK-----------ESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFT 1110 (1368)
Q Consensus 1042 LVmEYi~gGSL~dlL~~~~~-----------~~~~Lsw~erlkIA~QIA~ALaYLHs~Gsp~IVHRDIKPsNILLDedg~ 1110 (1368)
+|||||++|+|.++|+.... ....++|.++++|+.|+++||+|||+.+ |||||||++||||+.++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCC
T ss_conf 99982799939999986075410012211245788999999999999999999984088---422666676489889996
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHH
Q ss_conf 40116663100233224343222125556667310014988721205007999999970-99999999998503478854
Q 000659 1111 PKVSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDMTQPPGQENLVAWA 1189 (1368)
Q Consensus 1111 VKIsDFGLAr~i~~~~~~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLT-Gr~PFd~s~~~d~~nLv~Wa 1189 (1368)
+||+|||+++..............+||..|||||++.+..++.++|||||||+||||+| |+.||..... ..+...+
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~---~~~~~~i 273 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN---TEAIDCI 273 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH---HHHHHHH
T ss_pred EEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCH---HHHHHHH
T ss_conf 8976660333656787530047645565665826544799996630010578999998289999999899---9999999
Q ss_pred HHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 20014534652210488899999135999999999815969689999899999999999750
Q 000659 1190 RPLLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 1251 (1368)
Q Consensus 1190 ~plls~~e~L~eIIDp~L~~~~~~ee~~eLlkLI~~CLspDPkeRPTMsEILq~Lk~Il~e~ 1251 (1368)
.. . .+...+..+..++.+|+.+||+.||++||+|.||++.|+.+.+..
T Consensus 274 ~~----g----------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 274 TQ----G----------RELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp HH----T----------CCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred HC----C----------CCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 80----8----------989986446399999999974759657929999999999874588
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=427.58 Aligned_cols=263 Identities=26% Similarity=0.431 Sum_probs=221.6
Q ss_pred CCCCEEEEEEECCCEEEEEEEEC------CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEE
Q ss_conf 99215467710483799999952------897899999102352236999999998762144661125413430363589
Q 000659 969 GNFDASRILGEGGFGLVYSGVLD------DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCL 1042 (1368)
Q Consensus 969 ~nFei~eiLGkGaFGtVYKA~lk------dGk~VAVKvLk~~s~~~~keFlrEIeILkrLrHPNIVkLiGv~~e~~~l~L 1042 (1368)
++|.+.+.||+|+||.||+|.+. +++.||||+++.......++|.+|+++|++++|+|||+++|+|.+.+..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHCCCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 995248998100023665---------67888876799999999999984321069997323577666812137887401
Q 000659 1043 VYELIPNGSVESHLHGVD---------KESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKV 1113 (1368)
Q Consensus 1043 VmEYi~gGSL~dlL~~~~---------~~~~~Lsw~erlkIA~QIA~ALaYLHs~Gsp~IVHRDIKPsNILLDedg~VKI 1113 (1368)
|||||++|+|.++|+... .....++|.++++|+.|+++||.|||+++ |+|||||++||||+.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 16663100233224343222125556667310014988721205007999999970-99999999998503478854200
Q 000659 1114 SDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDMTQPPGQENLVAWARPL 1192 (1368)
Q Consensus 1114 sDFGLAr~i~~~~~~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLT-Gr~PFd~s~~~d~~nLv~Wa~pl 1192 (1368)
+|||+|+..............+||..|||||++.++.|+.++|||||||+||||+| |+.||..... ..+...+..
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~---~~~~~~i~~- 245 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN---NEVIECITQ- 245 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH---HHHHHHHHH-
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH---HHHHHHHHC-
T ss_conf 8730010067887416647513470103889870799970366778899999998089999999899---999999980-
Q ss_pred CCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 14534652210488899999135999999999815969689999899999999999750
Q 000659 1193 LTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 1251 (1368)
Q Consensus 1193 ls~~e~L~eIIDp~L~~~~~~ee~~eLlkLI~~CLspDPkeRPTMsEILq~Lk~Il~e~ 1251 (1368)
. .....+..+..++.+|+.+||+.+|++||+|.||++.|+.+.+..
T Consensus 246 ---~----------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 246 ---G----------RVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp ---T----------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred ---C----------CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf ---8----------988997414399999999976879668929999999998777639
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=423.06 Aligned_cols=258 Identities=27% Similarity=0.394 Sum_probs=216.0
Q ss_pred CCCCEEEEEEECCCEEEEEEEEC------CCCEEEEEEEECC-CCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEE
Q ss_conf 99215467710483799999952------8978999991023-5223699999999876214466112541343036358
Q 000659 969 GNFDASRILGEGGFGLVYSGVLD------DGTKVAVKVLKRV-DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARC 1041 (1368)
Q Consensus 969 ~nFei~eiLGkGaFGtVYKA~lk------dGk~VAVKvLk~~-s~~~~keFlrEIeILkrLrHPNIVkLiGv~~e~~~l~ 1041 (1368)
.++++.+.||+|+||.||+|.+. +++.||||+++.. .....++|.+|+.++++++|+|||+++|+|.+.+..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 88858669135888489999985776588886999999880149689999999999998589989877364998899889
Q ss_pred EEEEECCCCCHHHCCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 99952489981000236656------------788887679999999999998432106999732357766681213788
Q 000659 1042 LVYELIPNGSVESHLHGVDK------------ESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDF 1109 (1368)
Q Consensus 1042 LVmEYi~gGSL~dlL~~~~~------------~~~~Lsw~erlkIA~QIA~ALaYLHs~Gsp~IVHRDIKPsNILLDedg 1109 (1368)
+|||||++|+|.++|+.... ....++|.++++|+.|+|+||.|||+.+ |||||||++||||++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCC
T ss_conf 999818999499999862765433332211112468999999999999999999998689---97787362306887999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCHHHHHH
Q ss_conf 740116663100233224343222125556667310014988721205007999999970-9999999999850347885
Q 000659 1110 TPKVSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDMTQPPGQENLVAW 1188 (1368)
Q Consensus 1110 ~VKIsDFGLAr~i~~~~~~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLT-Gr~PFd~s~~~d~~nLv~W 1188 (1368)
.+||+|||+++.....+........+||..|||||++.++.|+.++|||||||+||||+| |+.||..... ..+...
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~---~~~~~~ 259 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN---QDVVEM 259 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH---HHHHHH
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH---HHHHHH
T ss_conf 78988760202336777404734512577656989982799996300015799999999689999999899---999999
Q ss_pred HHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4200145346522104888999991359999999998159696899998999999999
Q 000659 1189 ARPLLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKL 1246 (1368)
Q Consensus 1189 a~plls~~e~L~eIIDp~L~~~~~~ee~~eLlkLI~~CLspDPkeRPTMsEILq~Lk~ 1246 (1368)
+.. ..+...+.++..++.+|+.+||+.+|++||+|.||++.|+.
T Consensus 260 i~~--------------~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 260 IRN--------------RQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp HHT--------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred HHC--------------CCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
T ss_conf 981--------------99899962036999999999758796579299999999985
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=415.77 Aligned_cols=274 Identities=24% Similarity=0.360 Sum_probs=222.7
Q ss_pred CCHHHHHHHHCCCCEEEEEEECCCEEEEEEEECC------CCEEEEEEEECCC-CHHHHHHHHHHHHHHHCCC-CCCEEE
Q ss_conf 8978999880992154677104837999999528------9789999910235-2236999999998762144-661125
Q 000659 959 FSASEIEKATGNFDASRILGEGGFGLVYSGVLDD------GTKVAVKVLKRVD-QQGGREFLAEVEMLSRLHH-RNLVKL 1030 (1368)
Q Consensus 959 fs~eELe~at~nFei~eiLGkGaFGtVYKA~lkd------Gk~VAVKvLk~~s-~~~~keFlrEIeILkrLrH-PNIVkL 1030 (1368)
++..+++.-.++|++.+.||+|+||.||+|.+.. ++.||||+++... ....++|.+|+++|++++| +|||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEEEC-CCEEEEEEECCCCCHHHCCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 4134303-635899952489981000236656------------788887679999999999998432106999732357
Q 000659 1031 IGICIEE-QARCLVYELIPNGSVESHLHGVDK------------ESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRD 1097 (1368)
Q Consensus 1031 iGv~~e~-~~l~LVmEYi~gGSL~dlL~~~~~------------~~~~Lsw~erlkIA~QIA~ALaYLHs~Gsp~IVHRD 1097 (1368)
+|+|.+. +..++|||||++|+|.++|+.... ....++|.+++.|+.|+|+||.|||+++ |||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCC
T ss_conf 899994697799999838989799999743566654333410110356899999999999999987676278---43574
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCC
Q ss_conf 766681213788740116663100233224343222125556667310014988721205007999999970-9999999
Q 000659 1098 FKSSNILLEHDFTPKVSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDM 1176 (1368)
Q Consensus 1098 IKPsNILLDedg~VKIsDFGLAr~i~~~~~~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLT-Gr~PFd~ 1176 (1368)
||++||||++++.+||+|||+|+..............+||..|||||++.++.|+.++|||||||+||||+| |+.||..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 67211305799978979654322245688720325401466656989994699997553740689999998189999999
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999850347885420014534652210488899999135999999999815969689999899999999999750
Q 000659 1177 TQPPGQENLVAWARPLLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 1251 (1368)
Q Consensus 1177 s~~~d~~nLv~Wa~plls~~e~L~eIIDp~L~~~~~~ee~~eLlkLI~~CLspDPkeRPTMsEILq~Lk~Il~e~ 1251 (1368)
..... .+.... ....+...+..+..++.+++.+||+.||++||||.||++.|+.+++..
T Consensus 291 ~~~~~--~~~~~i--------------~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 291 VKIDE--EFCRRL--------------KEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp CCCSH--HHHHHH--------------HHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred CCHHH--HHHHHH--------------HCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89899--999999--------------738988888657899999999976869667939999999999999875
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=413.34 Aligned_cols=265 Identities=27% Similarity=0.443 Sum_probs=213.7
Q ss_pred HHCCCCEEEEEEECCCEEEEEEEECCCCEEEEEEEECC--CCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 80992154677104837999999528978999991023--5223699999999876214466112541343036358999
Q 000659 967 ATGNFDASRILGEGGFGLVYSGVLDDGTKVAVKVLKRV--DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVY 1044 (1368)
Q Consensus 967 at~nFei~eiLGkGaFGtVYKA~lkdGk~VAVKvLk~~--s~~~~keFlrEIeILkrLrHPNIVkLiGv~~e~~~l~LVm 1044 (1368)
..++|++.+.||+|+||+||+|.+.+ .||||+++.. +....++|.+|+++|++++|+|||+++|+|.+ +..++||
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred CHHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEE
T ss_conf 47994984498208886899999899--68999997268999999999999999985899887469999978-9589999
Q ss_pred EECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 52489981000236656788887679999999999998432106999732357766681213788740116663100233
Q 000659 1045 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMD 1124 (1368)
Q Consensus 1045 EYi~gGSL~dlL~~~~~~~~~Lsw~erlkIA~QIA~ALaYLHs~Gsp~IVHRDIKPsNILLDedg~VKIsDFGLAr~i~~ 1124 (1368)
|||++|+|.++|+.. ...++|.++++|+.|+|+||.|||+.+ |||||||++||||++++.+||+|||+|+....
T Consensus 111 Ey~~gGsL~~~l~~~---~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 184 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQ---ETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSR 184 (307)
T ss_dssp ECCSSCBHHHHHHTS---CCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC---
T ss_pred ECCCCCCHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 748998788987524---899999999999999999999997799---52785578997888999089944157542466
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCC---CCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 224343222125556667310014---98872120500799999997099999999998503478854200145346522
Q 000659 1125 EESRHISTRVMGTFGYVAPEYAMT---GHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLER 1201 (1368)
Q Consensus 1125 ~~~~~~st~vvGT~gYmAPEvL~~---~~~T~KSDVWSLGVILlELLTGr~PFd~s~~~d~~nLv~Wa~plls~~e~L~e 1201 (1368)
..........+||+.|||||++.+ +.|+.++|||||||+||||+||+.||...+.. ..+.......
T Consensus 185 ~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~--~~~~~~~~~~--------- 253 (307)
T 3omv_A 185 WSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR--DQIIFMVGRG--------- 253 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH--HHHHHHHHTT---------
T ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHHCC---------
T ss_conf 77640315644687724987861468998786877572899999999788998999969--9999999658---------
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 104888999991359999999998159696899998999999999997501
Q 000659 1202 IIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNECD 1252 (1368)
Q Consensus 1202 IIDp~L~~~~~~ee~~eLlkLI~~CLspDPkeRPTMsEILq~Lk~Il~e~~ 1252 (1368)
...+.+ .....++...+.+|+.+||+.+|++||+|.||++.|+.+.....
T Consensus 254 ~~~p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 254 YASPDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp CCCCCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCC-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 888872-00354456999999999757797689098999999999745078
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=407.06 Aligned_cols=254 Identities=23% Similarity=0.332 Sum_probs=210.7
Q ss_pred HCCCCEEEEEEECCCEEEEEEEE-CCCCEEEEEEEECC--CCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 09921546771048379999995-28978999991023--5223699999999876214466112541343036358999
Q 000659 968 TGNFDASRILGEGGFGLVYSGVL-DDGTKVAVKVLKRV--DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVY 1044 (1368)
Q Consensus 968 t~nFei~eiLGkGaFGtVYKA~l-kdGk~VAVKvLk~~--s~~~~keFlrEIeILkrLrHPNIVkLiGv~~e~~~l~LVm 1044 (1368)
.++|++.+.||+|+||.||+|.. .+|+.||||+++.. .....++|.+|+++|++|+|+|||++++++.+++..|+||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 12558847970277939999998899989999998658789799999999999998779989891999999899999999
Q ss_pred EECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 52489981000236656788887679999999999998432106999732357766681213788740116663100233
Q 000659 1045 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMD 1124 (1368)
Q Consensus 1045 EYi~gGSL~dlL~~~~~~~~~Lsw~erlkIA~QIA~ALaYLHs~Gsp~IVHRDIKPsNILLDedg~VKIsDFGLAr~i~~ 1124 (1368)
|||+||+|.++|... ....+++.+++.|+.||+.||.|||+++ |+|||||++||||+.++.+||+|||+|+....
T Consensus 103 Ey~~gg~L~~~i~~~--~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 177 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQ--KGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS 177 (350)
T ss_dssp ECCTTCBHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred ECCCCCCHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECC
T ss_conf 488998399999973--8999978999999999999999999899---15135978997987899989764652144068
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 22434322212555666731001498872120500799999997099999999998503478854200145346522104
Q 000659 1125 EESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIID 1204 (1368)
Q Consensus 1125 ~~~~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLTGr~PFd~s~~~d~~nLv~Wa~plls~~e~L~eIID 1204 (1368)
.. ......+||+.|||||++.+..|+.++|||||||+||||++|+.||...+. ..+... ...
T Consensus 178 ~~--~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~---~~~~~~---i~~---------- 239 (350)
T 4b9d_A 178 TV--ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM---KNLVLK---IIS---------- 239 (350)
T ss_dssp HH--HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHH---HHH----------
T ss_pred CC--CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH---HHHHHH---HHC----------
T ss_conf 85--410145788360399998799989599999999999999978799899699---999999---980----------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 88899999135999999999815969689999899999999
Q 000659 1205 PSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALK 1245 (1368)
Q Consensus 1205 p~L~~~~~~ee~~eLlkLI~~CLspDPkeRPTMsEILq~Lk 1245 (1368)
..+ .........++.+|+.+||+.||++||++.|+++.-+
T Consensus 240 ~~~-~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~ 279 (350)
T 4b9d_A 240 GSF-PPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGF 279 (350)
T ss_dssp TCC-CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHH
T ss_pred CCC-CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHH
T ss_conf 899-9997557999999999985589667908999963997
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=405.38 Aligned_cols=253 Identities=25% Similarity=0.351 Sum_probs=210.9
Q ss_pred HCCCCEEEEEEECCCEEEEEEEE-CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEE
Q ss_conf 09921546771048379999995-28978999991023522369999999987621446611254134303635899952
Q 000659 968 TGNFDASRILGEGGFGLVYSGVL-DDGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVYEL 1046 (1368)
Q Consensus 968 t~nFei~eiLGkGaFGtVYKA~l-kdGk~VAVKvLk~~s~~~~keFlrEIeILkrLrHPNIVkLiGv~~e~~~l~LVmEY 1046 (1368)
.+.|++.+.||+|+||.||+|.. .+|+.||||++........+.+.+|+++|++++|+|||++++++.+++.+||||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 48998100023665678888767999999999999843210699973235776668121378874011666310023322
Q 000659 1047 IPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMDEE 1126 (1368)
Q Consensus 1047 i~gGSL~dlL~~~~~~~~~Lsw~erlkIA~QIA~ALaYLHs~Gsp~IVHRDIKPsNILLDedg~VKIsDFGLAr~i~~~~ 1126 (1368)
|+||+|.+++.. ..+++.++..|+.||+.||.|||+++ |||||||++||||+.++.+||+|||+|+.+....
T Consensus 230 ~~gG~L~~~i~~-----~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~ 301 (423)
T 4fie_A 230 LEGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV 301 (423)
T ss_dssp CTTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC
T ss_pred CCCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCC
T ss_conf 899828988761-----69899999999999999999999889---0446578777898589998980372654777887
Q ss_pred CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCC
Q ss_conf 43432221255566673100149887212050079999999709999999999850347885420014534652210488
Q 000659 1127 SRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIIDPS 1206 (1368)
Q Consensus 1127 ~~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLTGr~PFd~s~~~d~~nLv~Wa~plls~~e~L~eIIDp~ 1206 (1368)
......+||+.|||||++.+..|+.++|||||||+||||++|+.||...+. ..+........ ...
T Consensus 302 --~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~---~~~~~~i~~~~----------~~~ 366 (423)
T 4fie_A 302 --PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP---LKAMKMIRDNL----------PPR 366 (423)
T ss_dssp --CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH---HHHHHHHHHSC----------CCC
T ss_pred --CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHCCC----------CCC
T ss_conf --643466647472799997799999689999999999999978799898699---99999997279----------988
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 899999135999999999815969689999899999999
Q 000659 1207 LGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALK 1245 (1368)
Q Consensus 1207 L~~~~~~ee~~eLlkLI~~CLspDPkeRPTMsEILq~Lk 1245 (1368)
+ ........++.+|+.+||..||++|+++.|+++.-+
T Consensus 367 ~--~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~ 403 (423)
T 4fie_A 367 L--KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPF 403 (423)
T ss_dssp C--SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGG
T ss_pred C--CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHH
T ss_conf 7--650129999999999986789568909999960987
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=402.99 Aligned_cols=252 Identities=24% Similarity=0.343 Sum_probs=210.5
Q ss_pred CCCCEEEEEEECCCEEEEEEEEC-CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEC
Q ss_conf 99215467710483799999952-89789999910235223699999999876214466112541343036358999524
Q 000659 969 GNFDASRILGEGGFGLVYSGVLD-DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVYELI 1047 (1368)
Q Consensus 969 ~nFei~eiLGkGaFGtVYKA~lk-dGk~VAVKvLk~~s~~~~keFlrEIeILkrLrHPNIVkLiGv~~e~~~l~LVmEYi 1047 (1368)
..|+..+.||+|+||.||+|... +|+.||||+++.......+.+.+|+++|++++|+|||++++++.+++.+|||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89981000236656788887679999999999998432106999732357766681213788740116663100233224
Q 000659 1048 PNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMDEES 1127 (1368)
Q Consensus 1048 ~gGSL~dlL~~~~~~~~~Lsw~erlkIA~QIA~ALaYLHs~Gsp~IVHRDIKPsNILLDedg~VKIsDFGLAr~i~~~~~ 1127 (1368)
+||+|.+++.. ..+++.++..|+.|++.||.|||+++ |||||||++||||+.++.+||+|||+|+.+....
T Consensus 154 ~gg~L~~~l~~-----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~- 224 (346)
T 4fih_A 154 EGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 224 (346)
T ss_dssp TTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS-
T ss_pred CCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCC-
T ss_conf 99808999871-----89899999999999999999999888---3556278899788799988990275753667887-
Q ss_pred CCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 34322212555666731001498872120500799999997099999999998503478854200145346522104888
Q 000659 1128 RHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIIDPSL 1207 (1368)
Q Consensus 1128 ~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLTGr~PFd~s~~~d~~nLv~Wa~plls~~e~L~eIIDp~L 1207 (1368)
......+||+.|||||++.+..|+.++|||||||+||||++|+.||...+.. .......... ...
T Consensus 225 -~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~---~~~~~i~~~~----------~~~- 289 (346)
T 4fih_A 225 -PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL---KAMKMIRDNL----------PPR- 289 (346)
T ss_dssp -CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH---HHHHHHHHSS----------CCC-
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHCCC----------CCC-
T ss_conf -7534656275827999977999996899999999999999787998985999---9999997179----------998-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999135999999999815969689999899999999
Q 000659 1208 GNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALK 1245 (1368)
Q Consensus 1208 ~~~~~~ee~~eLlkLI~~CLspDPkeRPTMsEILq~Lk 1245 (1368)
.........++.+|+.+||..||++|+++.|+++.-+
T Consensus 290 -~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~ 326 (346)
T 4fih_A 290 -LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPF 326 (346)
T ss_dssp -CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGG
T ss_pred -CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHH
T ss_conf -8750229999999999986799568909999960986
No 9
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=398.58 Aligned_cols=252 Identities=24% Similarity=0.320 Sum_probs=211.4
Q ss_pred CCCCEEEEEEECCCEEEEEEEE-CCCCEEEEEEEECC---CCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 9921546771048379999995-28978999991023---5223699999999876214466112541343036358999
Q 000659 969 GNFDASRILGEGGFGLVYSGVL-DDGTKVAVKVLKRV---DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVY 1044 (1368)
Q Consensus 969 ~nFei~eiLGkGaFGtVYKA~l-kdGk~VAVKvLk~~---s~~~~keFlrEIeILkrLrHPNIVkLiGv~~e~~~l~LVm 1044 (1368)
++|++.+.||+|+||+||+|.. .+++.||||++.+. +....+.+.+|+++|++++|+|||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 52489981000236656788887679999999999998432106999732357766681213788740116663100233
Q 000659 1045 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMD 1124 (1368)
Q Consensus 1045 EYi~gGSL~dlL~~~~~~~~~Lsw~erlkIA~QIA~ALaYLHs~Gsp~IVHRDIKPsNILLDedg~VKIsDFGLAr~i~~ 1124 (1368)
|||+||+|.++|.. ...+++.+...|+.|++.||.|||+++ |+||||||+||||+.++.+||+|||+|+.+..
T Consensus 112 Ey~~gG~L~~~i~~----~~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~ 184 (311)
T 4aw0_A 112 SYAKNGELLKYIRK----IGSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184 (311)
T ss_dssp CCCTTEEHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred ECCCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 64899899999987----499999999999999999999999887---82687878996985898889987687502577
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 22434322212555666731001498872120500799999997099999999998503478854200145346522104
Q 000659 1125 EESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIID 1204 (1368)
Q Consensus 1125 ~~~~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLTGr~PFd~s~~~d~~nLv~Wa~plls~~e~L~eIID 1204 (1368)
..........+||+.|||||++.+..|+.++|||||||+||||++|+.||...+. ..+.... ...
T Consensus 185 ~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~---~~~~~~i---~~~--------- 249 (311)
T 4aw0_A 185 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE---GLIFAKI---IKL--------- 249 (311)
T ss_dssp TTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHH---HHT---------
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHH---HCC---------
T ss_conf 8776543675568030799897689999689899899999999749899899799---9999999---719---------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 88899999135999999999815969689999899999999
Q 000659 1205 PSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALK 1245 (1368)
Q Consensus 1205 p~L~~~~~~ee~~eLlkLI~~CLspDPkeRPTMsEILq~Lk 1245 (1368)
. ..++.....++.+|+.+||..||++|+++.|++..-+
T Consensus 250 -~--~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~ 287 (311)
T 4aw0_A 250 -E--YDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGP 287 (311)
T ss_dssp -C--CCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHH
T ss_pred -C--CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCCCHH
T ss_conf -9--9999656999999999976289757809679758779
No 10
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=398.55 Aligned_cols=274 Identities=23% Similarity=0.300 Sum_probs=205.3
Q ss_pred CCCCEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECC----CEEEEE
Q ss_conf 9921546771048379999995289789999910235223699999999876214466112541343036----358999
Q 000659 969 GNFDASRILGEGGFGLVYSGVLDDGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQ----ARCLVY 1044 (1368)
Q Consensus 969 ~nFei~eiLGkGaFGtVYKA~lkdGk~VAVKvLk~~s~~~~keFlrEIeILkrLrHPNIVkLiGv~~e~~----~l~LVm 1044 (1368)
++|.+.+.||+|+||.||+|.+. |+.||||+++... .....+.+|+..+.+++|+|||+++|+|.+++ ..||||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 58999789840899399999999-9899999988313-366999999999860899988709999984688723788775
Q ss_pred EECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 524899810002366567888876799999999999984321069-----997323577666812137887401166631
Q 000659 1045 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDS-----SPRVIHRDFKSSNILLEHDFTPKVSDFGLA 1119 (1368)
Q Consensus 1045 EYi~gGSL~dlL~~~~~~~~~Lsw~erlkIA~QIA~ALaYLHs~G-----sp~IVHRDIKPsNILLDedg~VKIsDFGLA 1119 (1368)
|||++|+|.++|+. ..++|.++++|+.|+++||+|||+++ .++|+|||||++|||||.++++||+|||+|
T Consensus 81 Ey~~~gsL~~~l~~-----~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla 155 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR-----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp ECCTTCBHHHHHHH-----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred CCCCCCCHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCC
T ss_conf 17899968999975-----7999899999999999999999985240047898762467842089988997899847987
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCCCCCHHCCC------CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 002332243--432221255566673100149------887212050079999999709999999999850347885420
Q 000659 1120 RSAMDEESR--HISTRVMGTFGYVAPEYAMTG------HLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARP 1191 (1368)
Q Consensus 1120 r~i~~~~~~--~~st~vvGT~gYmAPEvL~~~------~~T~KSDVWSLGVILlELLTGr~PFd~s~~~d~~nLv~Wa~p 1191 (1368)
+........ ......+||..|||||++.+. .++.++|||||||+||||+||+.+|........- ...+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p-~~~~~~~ 234 (303)
T 3hmm_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP-YYDLVPS 234 (303)
T ss_dssp EEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCT-TTTTSCS
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHCCCC
T ss_conf 455677773221046424664626988845654556776570676664799999998789987766522353-1002545
Q ss_pred HCCCCCCCCEEECCCCCCCCC-----HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 014534652210488899999-----13599999999981596968999989999999999975
Q 000659 1192 LLTSREGLERIIDPSLGNDVP-----FDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNE 1250 (1368)
Q Consensus 1192 lls~~e~L~eIIDp~L~~~~~-----~ee~~eLlkLI~~CLspDPkeRPTMsEILq~Lk~Il~e 1250 (1368)
..........+.+..++...+ .++...+.+|+.+||+.||++||||.||++.|+.+.++
T Consensus 235 ~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 235 DPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp SCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 4309999998750257998876556658999999999997605975795999999999988987
Done!