Query 000660
Match_columns 1367
No_of_seqs 956 out of 6128
Neff 10.2
Searched_HMMs 46136
Date Mon Apr 1 21:33:34 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-82 2.6E-87 782.1 42.9 611 25-700 17-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.7E-62 3.8E-67 644.0 55.7 739 143-1132 134-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-41 2.6E-46 384.3 14.6 275 193-473 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 3.2E-37 7E-42 409.0 25.3 524 642-1307 69-607 (968)
5 PLN00113 leucine-rich repeat r 100.0 1E-35 2.2E-40 394.8 24.9 525 542-1198 70-605 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 6.8E-29 1.5E-33 259.1 -15.9 473 590-1282 62-539 (565)
7 KOG4194 Membrane glycoprotein 99.9 1.9E-26 4.1E-31 251.7 -0.3 363 847-1279 82-447 (873)
8 KOG4194 Membrane glycoprotein 99.9 2E-25 4.4E-30 243.7 2.3 358 900-1302 78-447 (873)
9 KOG0618 Serine/threonine phosp 99.9 5.3E-25 1.1E-29 254.5 -8.2 438 596-1198 45-487 (1081)
10 KOG0444 Cytoskeletal regulator 99.9 1.5E-24 3.3E-29 237.8 -5.2 98 1083-1182 282-380 (1255)
11 KOG0472 Leucine-rich repeat pr 99.9 5.8E-25 1.3E-29 229.9 -10.6 449 587-1200 82-541 (565)
12 KOG0618 Serine/threonine phosp 99.9 7.8E-24 1.7E-28 244.9 -6.0 88 589-701 14-102 (1081)
13 PLN03210 Resistant to P. syrin 99.9 9.2E-21 2E-25 250.3 21.5 132 1141-1288 779-910 (1153)
14 KOG0444 Cytoskeletal regulator 99.8 1.6E-23 3.5E-28 229.9 -6.6 365 824-1289 13-380 (1255)
15 PRK15387 E3 ubiquitin-protein 99.5 7.9E-14 1.7E-18 169.6 14.7 73 596-701 201-273 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 7.5E-14 1.6E-18 169.8 14.2 155 1093-1283 303-457 (788)
17 KOG4237 Extracellular matrix p 99.5 3.4E-16 7.5E-21 164.8 -5.3 370 900-1303 91-497 (498)
18 KOG4237 Extracellular matrix p 99.4 1.1E-14 2.3E-19 153.7 -1.4 288 642-985 67-358 (498)
19 PRK04841 transcriptional regul 99.4 3.1E-11 6.8E-16 160.3 26.3 293 188-520 14-332 (903)
20 PRK15370 E3 ubiquitin-protein 99.3 4.2E-12 9.1E-17 156.2 8.5 94 868-983 179-272 (754)
21 PRK15370 E3 ubiquitin-protein 99.3 7.6E-12 1.6E-16 153.9 9.9 94 868-983 200-293 (754)
22 PRK00411 cdc6 cell division co 99.2 1.1E-09 2.5E-14 129.5 26.0 297 186-499 28-358 (394)
23 cd00116 LRR_RI Leucine-rich re 99.2 9.3E-13 2E-17 152.0 -2.5 194 1084-1281 73-288 (319)
24 KOG0617 Ras suppressor protein 99.2 5.3E-13 1.1E-17 124.1 -4.9 161 1088-1289 29-190 (264)
25 TIGR02928 orc1/cdc6 family rep 99.1 1.8E-08 3.9E-13 118.1 27.3 297 187-499 14-350 (365)
26 cd00116 LRR_RI Leucine-rich re 99.1 1.7E-11 3.7E-16 141.4 1.1 221 1082-1307 41-291 (319)
27 KOG0617 Ras suppressor protein 99.1 3E-12 6.5E-17 119.2 -4.2 89 1108-1197 94-183 (264)
28 TIGR03015 pepcterm_ATPase puta 99.0 1.3E-08 2.7E-13 113.7 20.5 177 215-397 43-242 (269)
29 PRK00080 ruvB Holliday junctio 99.0 2.9E-09 6.2E-14 121.5 13.3 277 188-500 25-311 (328)
30 COG2909 MalT ATP-dependent tra 99.0 9.2E-08 2E-12 113.1 24.9 291 198-522 25-340 (894)
31 TIGR00635 ruvB Holliday juncti 99.0 4E-09 8.6E-14 119.9 12.8 276 188-499 4-289 (305)
32 PF01637 Arch_ATPase: Archaeal 98.9 2.7E-09 5.8E-14 116.9 10.1 194 190-392 1-233 (234)
33 PF05729 NACHT: NACHT domain 98.9 1.1E-08 2.4E-13 105.0 11.0 143 216-364 1-162 (166)
34 PTZ00112 origin recognition co 98.8 3.1E-07 6.7E-12 109.3 23.2 210 187-398 754-987 (1164)
35 COG3899 Predicted ATPase [Gene 98.7 2.8E-07 6.1E-12 116.6 18.1 311 189-517 1-383 (849)
36 KOG3207 Beta-tubulin folding c 98.6 7.1E-09 1.5E-13 112.3 0.7 116 1084-1199 214-338 (505)
37 PRK06893 DNA replication initi 98.6 2.6E-07 5.7E-12 99.0 11.2 153 215-395 39-205 (229)
38 PRK13342 recombination factor 98.6 1.1E-06 2.5E-11 103.3 17.3 173 189-395 13-198 (413)
39 KOG3207 Beta-tubulin folding c 98.6 1.2E-08 2.6E-13 110.5 0.1 112 1086-1197 166-281 (505)
40 COG2256 MGS1 ATPase related to 98.5 1.1E-06 2.3E-11 95.4 13.0 166 187-388 29-207 (436)
41 PF14580 LRR_9: Leucine-rich r 98.5 6E-08 1.3E-12 96.8 2.2 129 1088-1222 15-147 (175)
42 PRK05564 DNA polymerase III su 98.4 6.3E-06 1.4E-10 93.5 17.7 179 189-393 5-190 (313)
43 PRK07003 DNA polymerase III su 98.4 1.3E-05 2.7E-10 95.9 20.3 180 188-394 16-222 (830)
44 PF05496 RuvB_N: Holliday junc 98.4 2.7E-06 5.9E-11 86.4 12.7 181 188-398 24-226 (233)
45 TIGR03420 DnaA_homol_Hda DnaA 98.4 2E-06 4.4E-11 93.1 12.6 169 193-395 22-203 (226)
46 PRK14961 DNA polymerase III su 98.4 7.4E-06 1.6E-10 94.5 17.5 192 188-391 16-218 (363)
47 KOG1909 Ran GTPase-activating 98.4 2.4E-08 5.3E-13 105.4 -2.7 194 1084-1282 84-309 (382)
48 KOG4658 Apoptotic ATPase [Sign 98.4 1.1E-07 2.3E-12 119.7 2.4 229 1068-1312 545-788 (889)
49 PRK14960 DNA polymerase III su 98.4 6.1E-06 1.3E-10 97.6 16.4 193 188-392 15-218 (702)
50 KOG4341 F-box protein containi 98.4 1.2E-08 2.5E-13 110.0 -5.9 89 1246-1340 371-466 (483)
51 PRK14949 DNA polymerase III su 98.4 7.5E-06 1.6E-10 99.9 17.0 182 188-393 16-220 (944)
52 PLN03150 hypothetical protein; 98.4 4.6E-07 1E-11 112.1 6.9 105 1093-1197 419-525 (623)
53 PLN03150 hypothetical protein; 98.4 4.6E-07 1E-11 112.1 7.0 110 1070-1179 420-530 (623)
54 PF13401 AAA_22: AAA domain; P 98.4 7.7E-07 1.7E-11 86.9 7.1 117 215-334 4-125 (131)
55 PRK04195 replication factor C 98.4 2.2E-05 4.8E-10 94.5 21.0 246 188-472 14-271 (482)
56 KOG4341 F-box protein containi 98.4 1.6E-08 3.4E-13 109.0 -5.2 117 864-987 187-308 (483)
57 KOG1259 Nischarin, modulator o 98.4 2E-07 4.3E-12 95.6 2.8 106 1087-1197 302-409 (490)
58 KOG0532 Leucine-rich repeat (L 98.4 2.7E-08 5.9E-13 111.1 -3.7 114 1080-1197 86-199 (722)
59 PRK12402 replication factor C 98.4 6.2E-06 1.3E-10 95.6 15.6 198 188-392 15-225 (337)
60 PRK14963 DNA polymerase III su 98.3 1.7E-06 3.7E-11 102.7 9.8 194 188-390 14-214 (504)
61 PRK12323 DNA polymerase III su 98.3 1.2E-05 2.5E-10 95.0 15.7 198 188-393 16-225 (700)
62 PRK14957 DNA polymerase III su 98.3 1.5E-05 3.3E-10 94.6 16.7 184 188-395 16-223 (546)
63 TIGR02903 spore_lon_C ATP-depe 98.3 8.3E-06 1.8E-10 100.0 14.8 172 189-366 155-367 (615)
64 KOG1909 Ran GTPase-activating 98.3 1.4E-07 3E-12 99.8 -0.8 230 1069-1305 31-309 (382)
65 PRK06645 DNA polymerase III su 98.3 2.1E-05 4.5E-10 92.9 17.1 194 188-390 21-226 (507)
66 COG3903 Predicted ATPase [Gene 98.2 2E-06 4.4E-11 94.3 7.8 287 214-521 13-315 (414)
67 cd01128 rho_factor Transcripti 98.2 1.3E-06 2.9E-11 93.3 6.2 90 214-305 15-113 (249)
68 PTZ00202 tuzin; Provisional 98.2 0.00023 4.9E-09 79.3 23.3 169 184-364 258-433 (550)
69 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.9E-11 71.2 4.8 59 1093-1151 2-60 (61)
70 PF13191 AAA_16: AAA ATPase do 98.2 2.4E-06 5.1E-11 89.4 8.0 48 189-239 1-48 (185)
71 cd00009 AAA The AAA+ (ATPases 98.2 7.1E-06 1.5E-10 82.3 10.8 124 191-335 1-130 (151)
72 KOG1259 Nischarin, modulator o 98.2 2.3E-07 5.1E-12 95.1 -0.1 132 1139-1289 283-416 (490)
73 PRK08691 DNA polymerase III su 98.2 2.1E-05 4.5E-10 94.2 15.5 192 188-392 16-219 (709)
74 COG1474 CDC6 Cdc6-related prot 98.2 4.9E-05 1.1E-09 86.4 17.9 201 190-394 19-239 (366)
75 PRK00440 rfc replication facto 98.2 2.9E-05 6.3E-10 89.2 16.4 181 188-392 17-202 (319)
76 PRK14962 DNA polymerase III su 98.2 2.6E-05 5.6E-10 91.9 15.9 186 188-397 14-223 (472)
77 TIGR02397 dnaX_nterm DNA polym 98.2 4.5E-05 9.8E-10 89.1 17.8 183 188-394 14-219 (355)
78 PRK14956 DNA polymerase III su 98.2 6.9E-06 1.5E-10 94.6 10.4 195 188-390 18-219 (484)
79 PF13173 AAA_14: AAA domain 98.2 5.4E-06 1.2E-10 79.9 8.0 119 216-357 3-127 (128)
80 PLN03025 replication factor C 98.2 2.8E-05 6E-10 88.4 15.0 181 188-390 13-197 (319)
81 PRK09376 rho transcription ter 98.2 4.5E-06 9.7E-11 92.4 8.0 100 199-305 158-266 (416)
82 PRK05896 DNA polymerase III su 98.2 3.8E-05 8.3E-10 91.1 16.2 196 188-395 16-223 (605)
83 PRK14951 DNA polymerase III su 98.1 4.3E-05 9.4E-10 92.1 16.9 196 188-392 16-224 (618)
84 PRK07940 DNA polymerase III su 98.1 5.7E-05 1.2E-09 86.8 17.0 181 188-394 5-214 (394)
85 PRK07994 DNA polymerase III su 98.1 3.5E-05 7.5E-10 93.0 15.8 191 188-393 16-220 (647)
86 PF14580 LRR_9: Leucine-rich r 98.1 8.2E-07 1.8E-11 88.7 1.6 59 1113-1175 16-75 (175)
87 PF13855 LRR_8: Leucine rich r 98.1 3.2E-06 7E-11 69.0 4.8 60 1116-1175 1-60 (61)
88 PRK14964 DNA polymerase III su 98.1 5E-05 1.1E-09 88.9 16.4 180 188-390 13-214 (491)
89 PRK08727 hypothetical protein; 98.1 4.6E-05 1E-09 81.9 14.9 147 216-390 42-201 (233)
90 PRK15386 type III secretion pr 98.1 1.3E-05 2.8E-10 90.0 10.7 168 1085-1307 45-213 (426)
91 KOG2028 ATPase related to the 98.1 1.8E-05 3.9E-10 84.0 11.0 151 214-387 161-330 (554)
92 PRK14958 DNA polymerase III su 98.1 4.5E-05 9.8E-10 91.0 15.9 181 188-391 16-218 (509)
93 PRK07471 DNA polymerase III su 98.1 9.3E-05 2E-09 84.4 17.2 193 188-394 19-239 (365)
94 TIGR00678 holB DNA polymerase 98.1 7.6E-05 1.6E-09 77.8 15.3 91 294-389 95-187 (188)
95 PRK13341 recombination factor 98.1 4.9E-05 1.1E-09 93.9 15.4 166 188-387 28-211 (725)
96 KOG2120 SCF ubiquitin ligase, 98.0 7.4E-08 1.6E-12 98.9 -7.8 178 1092-1304 185-373 (419)
97 PRK09112 DNA polymerase III su 98.0 0.00013 2.7E-09 82.8 17.1 198 187-394 22-241 (351)
98 PRK08084 DNA replication initi 98.0 5.7E-05 1.2E-09 81.3 13.6 152 215-394 45-210 (235)
99 COG4886 Leucine-rich repeat (L 98.0 5.3E-06 1.1E-10 98.5 6.1 104 1090-1197 184-287 (394)
100 PRK08903 DnaA regulatory inact 98.0 6.6E-05 1.4E-09 81.1 13.7 151 215-397 42-203 (227)
101 COG4886 Leucine-rich repeat (L 98.0 3.7E-06 8.1E-11 99.8 4.5 182 1089-1289 113-295 (394)
102 PRK15386 type III secretion pr 98.0 2.2E-05 4.7E-10 88.2 10.1 32 1116-1150 156-187 (426)
103 PF00308 Bac_DnaA: Bacterial d 98.0 8.6E-05 1.9E-09 78.7 14.0 185 189-393 10-208 (219)
104 PRK14955 DNA polymerase III su 98.0 6.7E-05 1.5E-09 87.7 14.4 200 188-392 16-227 (397)
105 PRK09111 DNA polymerase III su 98.0 0.00011 2.4E-09 88.9 16.4 197 188-393 24-233 (598)
106 PRK14969 DNA polymerase III su 98.0 9.3E-05 2E-09 89.1 15.6 175 188-389 16-216 (527)
107 PRK14959 DNA polymerase III su 98.0 0.00014 3.1E-09 87.0 16.8 198 188-397 16-225 (624)
108 PRK09087 hypothetical protein; 98.0 4.9E-05 1.1E-09 80.8 11.6 140 215-393 44-195 (226)
109 KOG0532 Leucine-rich repeat (L 98.0 7.1E-07 1.5E-11 100.1 -2.6 136 1080-1225 109-244 (722)
110 TIGR01242 26Sp45 26S proteasom 97.9 1.7E-05 3.7E-10 92.0 7.9 180 187-387 121-328 (364)
111 PRK05642 DNA replication initi 97.9 0.00011 2.3E-09 79.1 13.3 153 215-395 45-210 (234)
112 PRK07133 DNA polymerase III su 97.9 0.00024 5.2E-09 86.4 17.6 194 188-394 18-221 (725)
113 COG2255 RuvB Holliday junction 97.9 0.0002 4.2E-09 74.4 14.0 193 188-395 26-225 (332)
114 PRK14950 DNA polymerase III su 97.9 0.00025 5.4E-09 87.1 17.7 195 188-393 16-221 (585)
115 TIGR00767 rho transcription te 97.9 4.4E-05 9.4E-10 85.3 9.8 91 214-305 167-265 (415)
116 PRK07764 DNA polymerase III su 97.9 0.00021 4.5E-09 89.7 16.7 188 188-390 15-218 (824)
117 PRK14970 DNA polymerase III su 97.9 0.00028 6E-09 82.4 16.7 180 188-390 17-206 (367)
118 PRK14952 DNA polymerase III su 97.9 0.00035 7.7E-09 84.1 17.6 198 188-397 13-224 (584)
119 KOG2227 Pre-initiation complex 97.9 0.00039 8.5E-09 77.3 16.3 218 187-409 149-386 (529)
120 PF14516 AAA_35: AAA-like doma 97.9 0.0028 6E-08 72.1 24.0 202 187-400 10-246 (331)
121 PRK14087 dnaA chromosomal repl 97.8 0.00035 7.5E-09 82.5 16.5 166 215-395 141-321 (450)
122 PRK14954 DNA polymerase III su 97.8 0.00037 7.9E-09 84.6 16.8 202 188-394 16-230 (620)
123 PRK06305 DNA polymerase III su 97.8 0.00036 7.7E-09 82.4 16.3 182 188-394 17-224 (451)
124 KOG2120 SCF ubiquitin ligase, 97.8 5.2E-07 1.1E-11 92.8 -6.3 136 868-1018 186-324 (419)
125 PRK14953 DNA polymerase III su 97.8 0.00063 1.4E-08 80.8 18.3 183 188-394 16-221 (486)
126 PRK11331 5-methylcytosine-spec 97.8 8E-05 1.7E-09 84.8 10.1 119 188-319 175-297 (459)
127 PRK08451 DNA polymerase III su 97.8 0.00052 1.1E-08 81.3 17.1 178 188-393 14-218 (535)
128 PHA02544 44 clamp loader, smal 97.8 0.00027 5.9E-09 80.8 14.6 148 188-363 21-171 (316)
129 PRK14971 DNA polymerase III su 97.8 0.00055 1.2E-08 83.7 17.3 175 188-390 17-219 (614)
130 PRK14948 DNA polymerase III su 97.8 0.00061 1.3E-08 83.3 17.5 196 188-393 16-222 (620)
131 KOG0989 Replication factor C, 97.7 0.00017 3.7E-09 75.8 10.3 181 188-386 36-223 (346)
132 PF05621 TniB: Bacterial TniB 97.7 0.00071 1.5E-08 72.8 15.2 193 196-392 45-260 (302)
133 PRK03992 proteasome-activating 97.7 0.00024 5.3E-09 82.6 12.1 160 187-367 130-317 (389)
134 PRK06647 DNA polymerase III su 97.7 0.0012 2.6E-08 79.9 17.9 193 188-392 16-219 (563)
135 CHL00181 cbbX CbbX; Provisiona 97.7 0.001 2.3E-08 73.5 15.9 135 215-366 59-210 (287)
136 KOG0531 Protein phosphatase 1, 97.6 1.2E-05 2.7E-10 95.2 0.2 41 920-961 91-132 (414)
137 KOG2543 Origin recognition com 97.6 0.00028 6.2E-09 76.3 10.1 168 187-364 5-192 (438)
138 PRK14965 DNA polymerase III su 97.6 0.0011 2.3E-08 81.2 16.4 196 188-395 16-223 (576)
139 PRK06620 hypothetical protein; 97.6 0.0015 3.3E-08 68.8 15.2 134 216-390 45-186 (214)
140 TIGR02881 spore_V_K stage V sp 97.6 0.00046 1E-08 76.0 11.8 161 189-366 7-192 (261)
141 PRK05563 DNA polymerase III su 97.6 0.0015 3.3E-08 79.3 17.3 192 188-391 16-218 (559)
142 KOG0531 Protein phosphatase 1, 97.6 1.6E-05 3.5E-10 94.3 0.2 107 1088-1199 91-198 (414)
143 TIGR00362 DnaA chromosomal rep 97.6 0.0013 2.8E-08 77.8 16.1 158 215-391 136-308 (405)
144 TIGR02880 cbbX_cfxQ probable R 97.5 0.001 2.2E-08 73.7 13.6 132 217-365 60-208 (284)
145 KOG1859 Leucine-rich repeat pr 97.5 2E-06 4.3E-11 99.1 -7.8 120 1079-1204 174-296 (1096)
146 KOG2982 Uncharacterized conser 97.5 2.6E-05 5.6E-10 80.7 0.6 87 1089-1175 68-157 (418)
147 PRK07399 DNA polymerase III su 97.5 0.0028 6.1E-08 71.0 15.9 199 188-394 4-222 (314)
148 TIGR02639 ClpA ATP-dependent C 97.5 0.0009 1.9E-08 84.9 13.4 155 188-365 182-358 (731)
149 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00089 1.9E-08 85.4 13.1 176 188-386 187-389 (852)
150 PRK00149 dnaA chromosomal repl 97.4 0.0019 4.2E-08 77.3 15.3 158 215-391 148-320 (450)
151 PRK12422 chromosomal replicati 97.4 0.0028 6E-08 74.7 16.0 152 215-385 141-305 (445)
152 PRK14088 dnaA chromosomal repl 97.4 0.0013 2.8E-08 77.7 13.4 159 215-390 130-302 (440)
153 KOG1859 Leucine-rich repeat pr 97.4 1.8E-06 4E-11 99.4 -9.9 125 1093-1225 165-289 (1096)
154 PRK05707 DNA polymerase III su 97.4 0.0031 6.7E-08 71.0 15.0 97 294-393 105-203 (328)
155 CHL00095 clpC Clp protease ATP 97.3 0.0011 2.3E-08 85.3 12.4 156 188-364 179-353 (821)
156 PF00004 AAA: ATPase family as 97.3 0.00041 8.9E-09 67.7 6.4 69 218-307 1-70 (132)
157 PF05673 DUF815: Protein of un 97.3 0.0051 1.1E-07 64.1 14.2 125 185-337 24-153 (249)
158 PRK14086 dnaA chromosomal repl 97.3 0.0062 1.4E-07 72.9 16.9 158 215-389 314-484 (617)
159 PRK06090 DNA polymerase III su 97.3 0.024 5.1E-07 63.2 20.0 166 196-394 11-202 (319)
160 PRK08769 DNA polymerase III su 97.2 0.012 2.6E-07 65.6 16.8 96 294-394 112-209 (319)
161 PRK10536 hypothetical protein; 97.2 0.0035 7.7E-08 66.1 11.4 136 188-336 55-214 (262)
162 PTZ00454 26S protease regulato 97.1 0.0023 4.9E-08 74.1 10.9 158 187-365 144-329 (398)
163 PRK08058 DNA polymerase III su 97.1 0.0097 2.1E-07 67.7 15.8 164 189-364 6-181 (329)
164 PTZ00361 26 proteosome regulat 97.1 0.0027 5.8E-08 73.9 11.2 159 188-367 183-369 (438)
165 PRK10787 DNA-binding ATP-depen 97.1 0.015 3.2E-07 73.5 18.6 166 187-365 321-506 (784)
166 PRK08116 hypothetical protein; 97.1 0.0014 3E-08 71.8 8.4 104 216-335 115-221 (268)
167 PRK11034 clpA ATP-dependent Cl 97.1 0.0021 4.6E-08 80.2 10.9 156 189-365 187-362 (758)
168 smart00382 AAA ATPases associa 97.1 0.0024 5.2E-08 63.3 9.6 88 216-308 3-91 (148)
169 TIGR00763 lon ATP-dependent pr 97.1 0.012 2.6E-07 75.3 18.0 51 188-238 320-370 (775)
170 CHL00176 ftsH cell division pr 97.1 0.0058 1.3E-07 75.0 14.4 177 188-385 183-386 (638)
171 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0052 1.1E-07 79.4 14.5 157 188-365 173-349 (852)
172 TIGR03689 pup_AAA proteasome A 97.1 0.0087 1.9E-07 70.8 14.9 168 188-366 182-379 (512)
173 KOG2004 Mitochondrial ATP-depe 97.0 0.01 2.2E-07 69.8 14.6 51 187-237 410-460 (906)
174 PF12799 LRR_4: Leucine Rich r 97.0 0.00047 1E-08 51.1 2.7 40 596-658 1-40 (44)
175 KOG2982 Uncharacterized conser 97.0 0.00034 7.4E-09 72.7 2.5 69 1083-1151 88-157 (418)
176 COG0593 DnaA ATPase involved i 97.0 0.0071 1.5E-07 68.7 13.1 160 187-367 87-259 (408)
177 KOG0741 AAA+-type ATPase [Post 97.0 0.0099 2.2E-07 67.2 13.9 160 213-396 536-715 (744)
178 TIGR01241 FtsH_fam ATP-depende 97.0 0.0069 1.5E-07 73.5 13.6 185 188-393 55-267 (495)
179 PRK08118 topology modulation p 97.0 0.00037 8.1E-09 70.3 2.2 34 217-250 3-37 (167)
180 PF13177 DNA_pol3_delta2: DNA 96.9 0.01 2.2E-07 59.6 12.1 136 192-352 1-161 (162)
181 PRK06871 DNA polymerase III su 96.9 0.032 7E-07 62.3 17.1 177 197-391 11-201 (325)
182 PRK10865 protein disaggregatio 96.9 0.0059 1.3E-07 78.4 12.8 45 188-238 178-222 (857)
183 TIGR00602 rad24 checkpoint pro 96.9 0.0046 9.9E-08 75.2 11.1 50 188-238 84-133 (637)
184 TIGR02639 ClpA ATP-dependent C 96.9 0.019 4.2E-07 73.0 17.3 121 188-321 454-579 (731)
185 TIGR02640 gas_vesic_GvpN gas v 96.9 0.02 4.2E-07 63.0 15.0 43 216-263 22-64 (262)
186 COG3267 ExeA Type II secretory 96.9 0.03 6.4E-07 58.2 14.9 175 214-395 50-247 (269)
187 COG0542 clpA ATP-binding subun 96.9 0.0031 6.7E-08 76.9 9.1 123 188-322 491-620 (786)
188 PF04665 Pox_A32: Poxvirus A32 96.8 0.0019 4.1E-08 67.9 6.2 36 216-253 14-49 (241)
189 PF12799 LRR_4: Leucine Rich r 96.8 0.0014 2.9E-08 48.7 3.6 37 1092-1129 1-37 (44)
190 KOG2035 Replication factor C, 96.8 0.058 1.2E-06 56.3 16.3 208 190-416 15-261 (351)
191 COG1373 Predicted ATPase (AAA+ 96.8 0.014 3E-07 68.0 13.6 225 217-498 39-269 (398)
192 COG5238 RNA1 Ran GTPase-activa 96.8 0.0008 1.7E-08 69.1 2.9 90 1084-1174 22-130 (388)
193 PRK13531 regulatory ATPase Rav 96.7 0.0076 1.6E-07 69.8 10.0 42 189-238 21-62 (498)
194 PRK08181 transposase; Validate 96.7 0.003 6.6E-08 68.6 6.4 101 216-335 107-209 (269)
195 PF02562 PhoH: PhoH-like prote 96.6 0.0053 1.1E-07 63.2 7.6 133 191-336 3-157 (205)
196 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0064 1.4E-07 66.1 8.7 51 213-263 17-71 (235)
197 PRK10865 protein disaggregatio 96.6 0.012 2.6E-07 75.7 12.4 138 188-334 568-720 (857)
198 COG0466 Lon ATP-dependent Lon 96.6 0.062 1.4E-06 63.9 16.8 166 187-366 322-509 (782)
199 COG2812 DnaX DNA polymerase II 96.6 0.0072 1.6E-07 70.8 9.4 188 188-387 16-214 (515)
200 COG5238 RNA1 Ran GTPase-activa 96.6 0.00083 1.8E-08 69.0 1.4 141 1084-1225 84-252 (388)
201 PRK07261 topology modulation p 96.6 0.0064 1.4E-07 61.8 7.6 66 217-306 2-68 (171)
202 TIGR03346 chaperone_ClpB ATP-d 96.5 0.01 2.2E-07 76.7 11.1 136 188-334 565-717 (852)
203 KOG0991 Replication factor C, 96.5 0.025 5.5E-07 57.0 11.2 44 188-237 27-70 (333)
204 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0023 5E-08 71.2 4.5 51 189-239 52-102 (361)
205 COG1223 Predicted ATPase (AAA+ 96.5 0.021 4.6E-07 58.6 10.7 159 188-367 121-299 (368)
206 PRK12608 transcription termina 96.5 0.017 3.7E-07 64.8 10.8 101 197-304 120-229 (380)
207 PF00158 Sigma54_activat: Sigm 96.5 0.0062 1.4E-07 61.3 6.7 132 190-335 1-144 (168)
208 TIGR03345 VI_ClpV1 type VI sec 96.4 0.006 1.3E-07 78.1 8.0 137 188-334 566-718 (852)
209 PRK07993 DNA polymerase III su 96.4 0.1 2.2E-06 59.2 16.8 181 196-393 10-204 (334)
210 PRK08939 primosomal protein Dn 96.4 0.012 2.6E-07 65.7 9.1 122 192-334 135-260 (306)
211 PRK06964 DNA polymerase III su 96.4 0.075 1.6E-06 60.0 15.4 94 294-394 131-226 (342)
212 KOG1644 U2-associated snRNP A' 96.4 0.0055 1.2E-07 60.7 5.5 102 1092-1196 42-149 (233)
213 PRK09361 radB DNA repair and r 96.3 0.013 2.9E-07 63.0 8.9 47 213-262 21-67 (225)
214 KOG0730 AAA+-type ATPase [Post 96.3 0.039 8.5E-07 64.9 12.6 53 186-238 432-491 (693)
215 PRK07952 DNA replication prote 96.3 0.018 3.9E-07 61.6 9.3 103 215-334 99-204 (244)
216 PF01695 IstB_IS21: IstB-like 96.3 0.0044 9.4E-08 63.2 4.3 101 215-335 47-150 (178)
217 COG1222 RPT1 ATP-dependent 26S 96.3 0.077 1.7E-06 57.8 13.6 158 188-367 151-337 (406)
218 KOG3665 ZYG-1-like serine/thre 96.3 0.0021 4.5E-08 79.5 2.3 111 1063-1175 143-261 (699)
219 KOG1644 U2-associated snRNP A' 96.2 0.0061 1.3E-07 60.4 4.9 109 595-731 41-151 (233)
220 PRK06526 transposase; Provisio 96.2 0.0079 1.7E-07 65.1 6.0 100 216-335 99-201 (254)
221 CHL00095 clpC Clp protease ATP 96.2 0.017 3.8E-07 74.4 10.1 137 188-334 509-661 (821)
222 KOG0744 AAA+-type ATPase [Post 96.2 0.04 8.8E-07 58.6 10.7 79 215-304 177-259 (423)
223 PF10443 RNA12: RNA12 protein; 96.2 0.15 3.3E-06 57.8 16.0 273 193-500 1-370 (431)
224 PRK06921 hypothetical protein; 96.1 0.018 3.9E-07 63.0 8.5 38 215-253 117-154 (266)
225 PRK04132 replication factor C 96.1 0.094 2E-06 65.9 15.5 154 223-393 574-731 (846)
226 PRK09183 transposase/IS protei 96.1 0.013 2.8E-07 63.9 7.3 23 216-238 103-125 (259)
227 TIGR02902 spore_lonB ATP-depen 96.1 0.028 6.2E-07 68.2 10.9 43 189-237 66-108 (531)
228 PRK11889 flhF flagellar biosyn 96.1 0.036 7.9E-07 62.2 10.6 89 214-306 240-331 (436)
229 TIGR01243 CDC48 AAA family ATP 96.1 0.027 5.8E-07 72.0 11.1 180 188-388 178-382 (733)
230 TIGR01243 CDC48 AAA family ATP 96.1 0.038 8.2E-07 70.7 12.4 179 188-387 453-657 (733)
231 PRK12377 putative replication 96.1 0.013 2.9E-07 62.8 7.0 102 215-334 101-205 (248)
232 TIGR02237 recomb_radB DNA repa 96.0 0.019 4E-07 61.1 7.9 49 213-264 10-58 (209)
233 CHL00195 ycf46 Ycf46; Provisio 96.0 0.025 5.5E-07 67.1 9.6 179 188-387 228-429 (489)
234 KOG1514 Origin recognition com 96.0 0.19 4.1E-06 59.8 16.2 196 188-393 396-621 (767)
235 COG2607 Predicted ATPase (AAA+ 96.0 0.029 6.3E-07 57.3 8.3 121 186-334 58-182 (287)
236 KOG2739 Leucine-rich acidic nu 96.0 0.0025 5.5E-08 66.1 1.0 83 1113-1197 40-126 (260)
237 PF08423 Rad51: Rad51; InterP 95.9 0.015 3.3E-07 63.2 6.8 57 213-270 36-96 (256)
238 KOG1051 Chaperone HSP104 and r 95.9 0.03 6.4E-07 69.7 9.6 136 188-335 562-710 (898)
239 KOG0733 Nuclear AAA ATPase (VC 95.8 0.14 2.9E-06 59.6 13.9 98 188-306 190-293 (802)
240 KOG3665 ZYG-1-like serine/thre 95.8 0.0046 1E-07 76.6 2.7 108 564-701 146-261 (699)
241 PF13207 AAA_17: AAA domain; P 95.8 0.006 1.3E-07 58.2 2.9 22 217-238 1-22 (121)
242 PRK06835 DNA replication prote 95.8 0.01 2.2E-07 66.7 5.0 102 216-334 184-288 (329)
243 COG1875 NYN ribonuclease and A 95.8 0.033 7.1E-07 60.6 8.4 137 190-335 226-388 (436)
244 PRK06696 uridine kinase; Valid 95.8 0.011 2.4E-07 63.3 5.0 43 193-238 3-45 (223)
245 COG1484 DnaC DNA replication p 95.8 0.026 5.6E-07 61.2 7.7 81 215-313 105-185 (254)
246 cd01393 recA_like RecA is a b 95.7 0.059 1.3E-06 58.1 10.5 92 213-305 17-124 (226)
247 PRK04296 thymidine kinase; Pro 95.7 0.016 3.4E-07 60.2 5.6 114 216-336 3-117 (190)
248 COG0470 HolB ATPase involved i 95.7 0.05 1.1E-06 62.6 10.5 142 189-351 2-167 (325)
249 KOG2228 Origin recognition com 95.7 0.072 1.6E-06 57.3 10.4 172 189-365 25-219 (408)
250 KOG4579 Leucine-rich repeat (L 95.7 0.00069 1.5E-08 62.2 -3.8 90 1084-1176 45-135 (177)
251 cd00983 recA RecA is a bacter 95.7 0.021 4.5E-07 63.5 6.7 87 212-305 52-143 (325)
252 PRK05541 adenylylsulfate kinas 95.7 0.022 4.7E-07 58.6 6.6 36 214-251 6-41 (176)
253 cd00544 CobU Adenosylcobinamid 95.7 0.025 5.4E-07 56.9 6.7 79 218-304 2-82 (169)
254 TIGR02012 tigrfam_recA protein 95.7 0.022 4.8E-07 63.2 6.9 87 212-305 52-143 (321)
255 PRK08699 DNA polymerase III su 95.6 0.14 3E-06 57.8 13.2 88 295-389 113-202 (325)
256 cd01133 F1-ATPase_beta F1 ATP 95.6 0.029 6.4E-07 60.4 7.3 89 214-304 68-172 (274)
257 PF00560 LRR_1: Leucine Rich R 95.6 0.0059 1.3E-07 37.5 1.1 22 597-618 1-22 (22)
258 PRK11034 clpA ATP-dependent Cl 95.6 0.037 8.1E-07 69.4 9.1 121 188-320 458-582 (758)
259 PF07728 AAA_5: AAA domain (dy 95.5 0.0056 1.2E-07 60.1 1.5 87 218-318 2-88 (139)
260 PHA02244 ATPase-like protein 95.5 0.097 2.1E-06 58.6 11.1 22 217-238 121-142 (383)
261 PRK05800 cobU adenosylcobinami 95.5 0.01 2.2E-07 59.9 3.2 81 217-304 3-85 (170)
262 PRK15455 PrkA family serine pr 95.5 0.01 2.3E-07 69.4 3.4 49 189-237 77-125 (644)
263 PLN03187 meiotic recombination 95.4 0.038 8.2E-07 62.3 7.7 59 213-272 124-186 (344)
264 TIGR02238 recomb_DMC1 meiotic 95.4 0.038 8.2E-07 61.8 7.7 58 213-271 94-155 (313)
265 cd01394 radB RadB. The archaea 95.4 0.059 1.3E-06 57.7 9.0 44 213-258 17-60 (218)
266 KOG4579 Leucine-rich repeat (L 95.4 0.00068 1.5E-08 62.2 -5.0 104 1092-1197 27-133 (177)
267 KOG1947 Leucine rich repeat pr 95.3 0.0018 4E-08 79.6 -3.4 36 922-957 186-224 (482)
268 PF00448 SRP54: SRP54-type pro 95.3 0.065 1.4E-06 55.6 8.6 89 215-306 1-94 (196)
269 PRK09354 recA recombinase A; P 95.3 0.049 1.1E-06 61.1 7.9 87 212-305 57-148 (349)
270 PF07693 KAP_NTPase: KAP famil 95.2 0.22 4.7E-06 57.3 13.5 43 194-239 2-44 (325)
271 KOG1969 DNA replication checkp 95.2 0.052 1.1E-06 64.4 8.1 76 213-307 324-399 (877)
272 PF14532 Sigma54_activ_2: Sigm 95.2 0.015 3.2E-07 56.9 3.2 108 191-335 1-110 (138)
273 PRK15429 formate hydrogenlyase 95.2 0.15 3.2E-06 64.9 13.0 135 188-335 376-521 (686)
274 COG0572 Udk Uridine kinase [Nu 95.2 0.036 7.9E-07 56.9 6.0 79 213-296 6-85 (218)
275 KOG0731 AAA+-type ATPase conta 95.2 0.33 7.1E-06 59.4 14.8 181 188-390 311-521 (774)
276 TIGR03499 FlhF flagellar biosy 95.1 0.072 1.6E-06 59.1 8.7 86 214-304 193-281 (282)
277 KOG1947 Leucine rich repeat pr 95.1 0.0032 6.9E-08 77.4 -2.1 33 1069-1101 189-223 (482)
278 TIGR02239 recomb_RAD51 DNA rep 95.1 0.066 1.4E-06 60.2 8.5 57 213-270 94-154 (316)
279 PRK08233 hypothetical protein; 95.1 0.062 1.3E-06 55.7 7.7 24 215-238 3-26 (182)
280 cd01131 PilT Pilus retraction 95.0 0.029 6.3E-07 58.7 5.0 112 216-339 2-113 (198)
281 PRK04301 radA DNA repair and r 95.0 0.066 1.4E-06 60.8 8.3 57 213-270 100-160 (317)
282 PRK05022 anaerobic nitric oxid 95.0 0.27 5.9E-06 59.9 14.0 136 187-335 186-332 (509)
283 COG0468 RecA RecA/RadA recombi 95.0 0.091 2E-06 57.0 8.7 91 211-304 56-150 (279)
284 TIGR01650 PD_CobS cobaltochela 95.0 0.26 5.7E-06 54.6 12.3 58 190-260 47-104 (327)
285 KOG0734 AAA+-type ATPase conta 95.0 0.12 2.5E-06 59.0 9.5 54 188-241 304-363 (752)
286 KOG2739 Leucine-rich acidic nu 94.9 0.01 2.2E-07 61.7 1.2 83 1091-1176 42-128 (260)
287 KOG0735 AAA+-type ATPase [Post 94.9 0.052 1.1E-06 64.0 6.9 72 215-305 431-504 (952)
288 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.07 1.5E-06 52.5 6.8 117 216-335 3-138 (159)
289 PF07724 AAA_2: AAA domain (Cd 94.8 0.056 1.2E-06 54.6 6.2 43 215-258 3-45 (171)
290 COG0542 clpA ATP-binding subun 94.8 0.067 1.5E-06 65.7 7.8 157 188-365 170-346 (786)
291 cd03214 ABC_Iron-Siderophores_ 94.8 0.23 5.1E-06 51.1 10.9 120 215-338 25-161 (180)
292 PRK13695 putative NTPase; Prov 94.7 0.032 7E-07 57.2 4.3 22 217-238 2-23 (174)
293 cd01120 RecA-like_NTPases RecA 94.7 0.11 2.5E-06 52.5 8.5 39 217-257 1-39 (165)
294 cd03247 ABCC_cytochrome_bd The 94.7 0.18 4E-06 51.8 10.0 119 215-339 28-161 (178)
295 COG4608 AppF ABC-type oligopep 94.7 0.11 2.3E-06 55.1 8.1 127 214-343 38-178 (268)
296 COG0464 SpoVK ATPases of the A 94.7 0.24 5.3E-06 60.4 12.5 134 213-367 274-425 (494)
297 PLN00020 ribulose bisphosphate 94.7 0.061 1.3E-06 59.6 6.3 27 213-239 146-172 (413)
298 cd03228 ABCC_MRP_Like The MRP 94.7 0.22 4.7E-06 50.8 10.2 119 215-340 28-160 (171)
299 PRK10733 hflB ATP-dependent me 94.7 0.14 3E-06 64.1 10.3 158 189-367 153-337 (644)
300 TIGR02236 recomb_radA DNA repa 94.6 0.13 2.9E-06 58.3 9.4 57 213-270 93-153 (310)
301 COG1102 Cmk Cytidylate kinase 94.6 0.048 1E-06 52.2 4.7 43 217-272 2-44 (179)
302 PLN03186 DNA repair protein RA 94.6 0.18 3.8E-06 57.1 10.0 58 213-271 121-182 (342)
303 cd03238 ABC_UvrA The excision 94.6 0.17 3.7E-06 51.4 9.1 115 215-339 21-153 (176)
304 PRK07132 DNA polymerase III su 94.6 1.4 3.1E-05 48.9 16.9 157 215-393 18-185 (299)
305 COG0563 Adk Adenylate kinase a 94.6 0.05 1.1E-06 55.3 5.1 22 217-238 2-23 (178)
306 COG2884 FtsE Predicted ATPase 94.6 0.28 6.1E-06 48.6 9.8 61 282-342 142-204 (223)
307 PRK13949 shikimate kinase; Pro 94.5 0.28 6.1E-06 49.7 10.5 22 217-238 3-24 (169)
308 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.5 0.26 5.5E-06 48.5 9.9 105 215-339 26-131 (144)
309 PF00154 RecA: recA bacterial 94.5 0.094 2E-06 58.1 7.4 86 213-305 51-141 (322)
310 PF13604 AAA_30: AAA domain; P 94.5 0.082 1.8E-06 55.1 6.7 104 216-335 19-131 (196)
311 COG1618 Predicted nucleotide k 94.5 0.033 7.1E-07 53.3 3.2 24 216-239 6-29 (179)
312 COG1121 ZnuC ABC-type Mn/Zn tr 94.4 0.19 4.2E-06 53.3 9.2 121 215-337 30-201 (254)
313 cd03223 ABCD_peroxisomal_ALDP 94.4 0.31 6.7E-06 49.4 10.5 119 215-339 27-152 (166)
314 cd03222 ABC_RNaseL_inhibitor T 94.4 0.21 4.6E-06 50.8 9.2 103 215-339 25-136 (177)
315 TIGR00959 ffh signal recogniti 94.4 0.22 4.8E-06 58.1 10.4 25 214-238 98-122 (428)
316 COG1419 FlhF Flagellar GTP-bin 94.3 0.13 2.8E-06 57.9 8.1 89 214-306 202-292 (407)
317 PRK07667 uridine kinase; Provi 94.3 0.059 1.3E-06 56.1 5.0 38 197-238 3-40 (193)
318 PRK14722 flhF flagellar biosyn 94.2 0.14 3E-06 58.3 8.3 88 215-306 137-226 (374)
319 PRK00771 signal recognition pa 94.2 0.24 5.3E-06 57.9 10.2 25 214-238 94-118 (437)
320 PTZ00301 uridine kinase; Provi 94.2 0.051 1.1E-06 56.9 4.3 23 215-237 3-25 (210)
321 PRK06067 flagellar accessory p 94.1 0.26 5.6E-06 53.4 9.9 88 213-305 23-130 (234)
322 PRK12724 flagellar biosynthesi 94.1 0.11 2.4E-06 59.3 7.2 24 214-237 222-245 (432)
323 PRK10867 signal recognition pa 94.1 0.26 5.5E-06 57.6 10.3 24 214-237 99-122 (433)
324 KOG0924 mRNA splicing factor A 94.1 0.26 5.7E-06 57.7 9.9 141 197-351 361-529 (1042)
325 KOG0733 Nuclear AAA ATPase (VC 94.1 0.41 9E-06 55.9 11.4 150 215-387 545-718 (802)
326 cd03216 ABC_Carb_Monos_I This 94.0 0.14 3.1E-06 51.6 7.1 116 215-338 26-145 (163)
327 TIGR01817 nifA Nif-specific re 94.0 0.27 5.8E-06 60.6 10.9 133 187-334 195-340 (534)
328 PRK05703 flhF flagellar biosyn 94.0 0.2 4.4E-06 58.8 9.3 88 215-306 221-310 (424)
329 PRK12727 flagellar biosynthesi 94.0 0.21 4.4E-06 58.8 9.1 24 214-237 349-372 (559)
330 PTZ00494 tuzin-like protein; P 94.0 11 0.00024 43.1 21.5 169 185-365 368-544 (664)
331 cd02019 NK Nucleoside/nucleoti 93.9 0.042 9E-07 45.9 2.5 22 217-238 1-22 (69)
332 cd03281 ABC_MSH5_euk MutS5 hom 93.9 0.058 1.3E-06 57.0 4.2 23 215-237 29-51 (213)
333 PTZ00035 Rad51 protein; Provis 93.9 0.41 8.9E-06 54.4 11.2 57 213-270 116-176 (337)
334 TIGR00390 hslU ATP-dependent p 93.9 0.15 3.3E-06 58.0 7.6 81 188-270 12-104 (441)
335 PRK10820 DNA-binding transcrip 93.9 0.41 8.8E-06 58.4 11.9 133 189-335 205-349 (520)
336 PRK11608 pspF phage shock prot 93.9 0.16 3.5E-06 57.7 7.9 133 189-335 7-151 (326)
337 PF13306 LRR_5: Leucine rich r 93.8 0.18 3.8E-06 48.7 7.2 85 1087-1174 7-91 (129)
338 PRK13948 shikimate kinase; Pro 93.8 0.46 9.9E-06 48.5 10.2 25 214-238 9-33 (182)
339 cd03246 ABCC_Protease_Secretio 93.8 0.22 4.8E-06 50.9 8.1 118 215-339 28-160 (173)
340 PF13238 AAA_18: AAA domain; P 93.8 0.041 9E-07 53.1 2.6 21 218-238 1-21 (129)
341 TIGR00235 udk uridine kinase. 93.7 0.054 1.2E-06 57.3 3.6 25 214-238 5-29 (207)
342 PRK05480 uridine/cytidine kina 93.7 0.056 1.2E-06 57.4 3.7 25 214-238 5-29 (209)
343 PF00485 PRK: Phosphoribulokin 93.7 0.045 9.8E-07 57.2 2.9 22 217-238 1-22 (194)
344 PRK06547 hypothetical protein; 93.7 0.089 1.9E-06 53.2 4.8 26 213-238 13-38 (172)
345 COG1136 SalX ABC-type antimicr 93.6 0.51 1.1E-05 49.3 10.3 61 282-342 147-210 (226)
346 cd02025 PanK Pantothenate kina 93.6 0.22 4.8E-06 52.9 7.8 22 217-238 1-22 (220)
347 TIGR01425 SRP54_euk signal rec 93.6 0.36 7.9E-06 55.9 10.1 24 214-237 99-122 (429)
348 TIGR00064 ftsY signal recognit 93.5 0.37 8E-06 53.0 9.8 90 214-306 71-165 (272)
349 PF05659 RPW8: Arabidopsis bro 93.5 1.4 3E-05 42.9 12.5 83 5-87 3-86 (147)
350 TIGR02974 phageshock_pspF psp 93.5 0.26 5.5E-06 56.1 8.8 45 190-238 1-45 (329)
351 PF01583 APS_kinase: Adenylyls 93.5 0.088 1.9E-06 51.6 4.3 24 215-238 2-25 (156)
352 cd03115 SRP The signal recogni 93.5 0.28 6E-06 50.2 8.3 22 217-238 2-23 (173)
353 PRK06002 fliI flagellum-specif 93.5 0.29 6.3E-06 56.8 9.1 88 214-304 164-263 (450)
354 PF08298 AAA_PrkA: PrkA AAA do 93.5 0.087 1.9E-06 58.3 4.7 51 187-237 60-110 (358)
355 PF13671 AAA_33: AAA domain; P 93.5 0.057 1.2E-06 53.3 3.0 21 217-237 1-21 (143)
356 TIGR00382 clpX endopeptidase C 93.5 0.32 7E-06 56.3 9.5 51 187-237 76-138 (413)
357 PRK12723 flagellar biosynthesi 93.4 0.39 8.4E-06 55.3 10.0 90 214-307 173-266 (388)
358 KOG2123 Uncharacterized conser 93.4 0.0023 5E-08 66.1 -6.9 80 643-731 20-99 (388)
359 TIGR00708 cobA cob(I)alamin ad 93.4 0.27 5.9E-06 49.1 7.5 118 215-335 5-140 (173)
360 KOG1532 GTPase XAB1, interacts 93.4 0.3 6.6E-06 50.9 7.9 85 213-297 17-118 (366)
361 PF00006 ATP-synt_ab: ATP synt 93.3 0.17 3.7E-06 53.0 6.4 84 215-304 15-114 (215)
362 COG1126 GlnQ ABC-type polar am 93.3 0.51 1.1E-05 48.0 9.3 125 214-341 27-202 (240)
363 PRK05439 pantothenate kinase; 93.3 0.37 8.1E-06 53.4 9.2 81 213-296 84-166 (311)
364 PRK14974 cell division protein 93.3 0.45 9.7E-06 53.7 10.0 91 214-307 139-234 (336)
365 TIGR03877 thermo_KaiC_1 KaiC d 93.3 0.47 1E-05 51.4 10.0 49 213-265 19-67 (237)
366 COG1428 Deoxynucleoside kinase 93.3 0.059 1.3E-06 54.5 2.7 25 215-239 4-28 (216)
367 KOG0728 26S proteasome regulat 93.3 1 2.2E-05 46.3 11.2 148 211-379 177-349 (404)
368 PRK06762 hypothetical protein; 93.2 0.069 1.5E-06 54.3 3.3 24 215-238 2-25 (166)
369 PF06309 Torsin: Torsin; Inte 93.2 0.1 2.2E-06 48.5 4.0 50 189-238 26-76 (127)
370 PRK12726 flagellar biosynthesi 93.2 0.51 1.1E-05 53.2 10.1 90 214-306 205-296 (407)
371 PF08433 KTI12: Chromatin asso 93.2 0.097 2.1E-06 57.2 4.5 23 216-238 2-24 (270)
372 TIGR01069 mutS2 MutS2 family p 93.2 0.055 1.2E-06 68.4 2.9 187 215-411 322-518 (771)
373 PF12775 AAA_7: P-loop contain 93.1 0.057 1.2E-06 59.3 2.6 97 197-313 22-118 (272)
374 TIGR02858 spore_III_AA stage I 93.1 0.48 1E-05 51.8 9.7 128 197-339 98-233 (270)
375 cd01122 GP4d_helicase GP4d_hel 93.1 0.66 1.4E-05 51.6 11.3 54 214-270 29-82 (271)
376 cd03230 ABC_DR_subfamily_A Thi 93.1 0.51 1.1E-05 48.2 9.5 119 215-339 26-159 (173)
377 PRK09270 nucleoside triphospha 93.1 0.32 6.9E-06 52.4 8.2 26 213-238 31-56 (229)
378 cd01125 repA Hexameric Replica 93.0 0.48 1E-05 51.5 9.7 21 217-237 3-23 (239)
379 PF07726 AAA_3: ATPase family 93.0 0.052 1.1E-06 50.5 1.8 27 218-246 2-28 (131)
380 PHA00729 NTP-binding motif con 93.0 0.12 2.6E-06 54.0 4.6 25 214-238 16-40 (226)
381 KOG0729 26S proteasome regulat 93.0 0.4 8.6E-06 49.6 8.1 56 188-245 177-239 (435)
382 KOG2170 ATPase of the AAA+ sup 93.0 0.41 8.8E-06 51.1 8.4 52 187-238 81-133 (344)
383 PRK06731 flhF flagellar biosyn 93.0 0.53 1.2E-05 51.3 9.7 89 215-307 75-166 (270)
384 PTZ00185 ATPase alpha subunit; 92.9 0.39 8.5E-06 55.9 8.9 91 214-306 188-300 (574)
385 cd01135 V_A-ATPase_B V/A-type 92.9 0.32 7E-06 52.4 7.8 91 214-304 68-175 (276)
386 TIGR03878 thermo_KaiC_2 KaiC d 92.9 0.49 1.1E-05 51.9 9.5 41 213-255 34-74 (259)
387 TIGR00554 panK_bact pantothena 92.9 0.38 8.2E-06 53.0 8.5 25 213-237 60-84 (290)
388 PTZ00088 adenylate kinase 1; P 92.9 0.091 2E-06 55.9 3.7 22 217-238 8-29 (229)
389 TIGR00150 HI0065_YjeE ATPase, 92.9 0.14 3.1E-06 48.6 4.6 41 195-239 6-46 (133)
390 PRK05201 hslU ATP-dependent pr 92.8 0.26 5.5E-06 56.3 7.2 82 187-270 14-107 (443)
391 PF00910 RNA_helicase: RNA hel 92.8 0.061 1.3E-06 49.7 2.0 21 218-238 1-21 (107)
392 cd01121 Sms Sms (bacterial rad 92.8 0.6 1.3E-05 53.7 10.4 84 213-304 80-167 (372)
393 PRK03839 putative kinase; Prov 92.8 0.08 1.7E-06 54.6 3.0 22 217-238 2-23 (180)
394 PF13504 LRR_7: Leucine rich r 92.7 0.071 1.5E-06 30.2 1.4 17 596-612 1-17 (17)
395 KOG0739 AAA+-type ATPase [Post 92.7 1 2.3E-05 47.7 10.7 176 188-386 133-334 (439)
396 TIGR01360 aden_kin_iso1 adenyl 92.6 0.099 2.2E-06 54.5 3.5 24 214-237 2-25 (188)
397 PRK09519 recA DNA recombinatio 92.5 0.42 9.1E-06 59.5 9.1 85 213-304 58-147 (790)
398 TIGR03575 selen_PSTK_euk L-ser 92.5 0.3 6.5E-06 54.9 7.3 22 218-239 2-23 (340)
399 cd03283 ABC_MutS-like MutS-lik 92.5 0.51 1.1E-05 49.3 8.6 22 216-237 26-47 (199)
400 cd03285 ABC_MSH2_euk MutS2 hom 92.5 0.032 6.9E-07 59.4 -0.4 175 214-398 29-218 (222)
401 PRK00625 shikimate kinase; Pro 92.5 0.088 1.9E-06 53.3 2.8 22 217-238 2-23 (173)
402 PRK05342 clpX ATP-dependent pr 92.4 0.28 6E-06 57.2 7.1 50 188-237 71-130 (412)
403 PRK09280 F0F1 ATP synthase sub 92.4 0.38 8.3E-06 56.1 8.1 90 214-304 143-247 (463)
404 PRK05917 DNA polymerase III su 92.4 1.3 2.9E-05 48.4 11.8 130 196-352 5-154 (290)
405 TIGR03498 FliI_clade3 flagella 92.4 0.41 9E-06 55.5 8.4 88 214-304 139-239 (418)
406 PRK05986 cob(I)alamin adenolsy 92.3 0.24 5.2E-06 50.2 5.6 119 215-335 22-158 (191)
407 PRK04040 adenylate kinase; Pro 92.3 0.1 2.2E-06 53.8 3.1 23 216-238 3-25 (188)
408 PRK08927 fliI flagellum-specif 92.3 0.44 9.5E-06 55.3 8.4 87 214-304 157-257 (442)
409 cd03282 ABC_MSH4_euk MutS4 hom 92.3 0.16 3.6E-06 53.0 4.6 121 215-342 29-158 (204)
410 PRK06217 hypothetical protein; 92.3 0.22 4.8E-06 51.4 5.6 23 217-239 3-25 (183)
411 PRK10923 glnG nitrogen regulat 92.3 1.4 3E-05 53.6 13.4 46 189-238 139-184 (469)
412 PRK14723 flhF flagellar biosyn 92.3 0.75 1.6E-05 57.2 10.8 87 215-305 185-273 (767)
413 cd03217 ABC_FeS_Assembly ABC-t 92.2 0.57 1.2E-05 49.2 8.7 25 214-238 25-49 (200)
414 COG4088 Predicted nucleotide k 92.2 0.16 3.5E-06 50.7 4.0 22 216-237 2-23 (261)
415 PRK12597 F0F1 ATP synthase sub 92.2 0.36 7.9E-06 56.5 7.6 90 214-304 142-246 (461)
416 PRK10751 molybdopterin-guanine 92.1 0.15 3.1E-06 51.2 3.8 25 214-238 5-29 (173)
417 COG1066 Sms Predicted ATP-depe 92.1 0.67 1.5E-05 51.9 9.1 83 214-305 92-178 (456)
418 PRK14721 flhF flagellar biosyn 92.1 0.65 1.4E-05 53.9 9.6 24 214-237 190-213 (420)
419 KOG0727 26S proteasome regulat 92.1 0.43 9.3E-06 48.9 7.0 51 188-238 155-212 (408)
420 PRK08972 fliI flagellum-specif 92.1 0.27 5.9E-06 56.8 6.3 87 214-304 161-261 (444)
421 PRK08149 ATP synthase SpaL; Va 92.0 0.4 8.7E-06 55.6 7.7 87 214-304 150-250 (428)
422 cd02024 NRK1 Nicotinamide ribo 92.0 0.1 2.2E-06 53.4 2.5 22 217-238 1-22 (187)
423 PRK00889 adenylylsulfate kinas 92.0 0.14 3.1E-06 52.5 3.7 25 214-238 3-27 (175)
424 PRK04328 hypothetical protein; 91.9 0.5 1.1E-05 51.5 8.0 42 213-256 21-62 (249)
425 PRK00131 aroK shikimate kinase 91.9 0.13 2.7E-06 52.9 3.2 24 215-238 4-27 (175)
426 cd01136 ATPase_flagellum-secre 91.9 0.44 9.6E-06 53.3 7.5 86 215-304 69-168 (326)
427 smart00534 MUTSac ATPase domai 91.9 1 2.2E-05 46.6 9.8 20 217-236 1-20 (185)
428 cd00267 ABC_ATPase ABC (ATP-bi 91.8 0.38 8.3E-06 48.2 6.6 117 215-340 25-145 (157)
429 COG0465 HflB ATP-dependent Zn 91.8 1.2 2.5E-05 53.6 11.3 56 186-241 148-209 (596)
430 cd01132 F1_ATPase_alpha F1 ATP 91.8 0.33 7.1E-06 52.4 6.2 85 214-304 68-170 (274)
431 TIGR01359 UMP_CMP_kin_fam UMP- 91.8 0.11 2.3E-06 54.0 2.5 21 217-237 1-21 (183)
432 cd02023 UMPK Uridine monophosp 91.8 0.11 2.3E-06 54.7 2.5 21 217-237 1-21 (198)
433 PRK06793 fliI flagellum-specif 91.7 0.66 1.4E-05 53.9 9.0 90 214-306 155-257 (432)
434 TIGR02322 phosphon_PhnN phosph 91.7 0.13 2.9E-06 53.0 3.1 23 216-238 2-24 (179)
435 PF01078 Mg_chelatase: Magnesi 91.6 0.26 5.6E-06 50.6 4.9 42 188-237 3-44 (206)
436 PRK07594 type III secretion sy 91.6 0.48 1E-05 55.0 7.8 87 214-304 154-254 (433)
437 PRK05922 type III secretion sy 91.6 0.52 1.1E-05 54.7 8.0 86 215-304 157-256 (434)
438 COG0714 MoxR-like ATPases [Gen 91.6 0.36 7.8E-06 55.3 6.8 63 189-264 25-87 (329)
439 PRK15453 phosphoribulokinase; 91.6 0.82 1.8E-05 49.4 8.9 24 214-237 4-27 (290)
440 PF00625 Guanylate_kin: Guanyl 91.6 0.2 4.4E-06 51.7 4.3 38 215-254 2-39 (183)
441 PRK06995 flhF flagellar biosyn 91.6 0.94 2E-05 53.5 10.2 25 214-238 255-279 (484)
442 cd03284 ABC_MutS1 MutS1 homolo 91.6 0.23 5E-06 52.6 4.8 21 216-236 31-51 (216)
443 TIGR02915 PEP_resp_reg putativ 91.6 1.5 3.2E-05 53.0 12.4 133 189-335 140-284 (445)
444 cd03287 ABC_MSH3_euk MutS3 hom 91.5 1.2 2.7E-05 47.1 10.1 23 215-237 31-53 (222)
445 COG0396 sufC Cysteine desulfur 91.5 1.7 3.6E-05 44.9 10.3 64 284-347 151-216 (251)
446 PRK13765 ATP-dependent proteas 91.5 0.28 6E-06 60.3 5.9 75 188-272 31-105 (637)
447 PRK09099 type III secretion sy 91.5 0.43 9.4E-06 55.6 7.2 88 214-304 162-262 (441)
448 cd00227 CPT Chloramphenicol (C 91.4 0.15 3.2E-06 52.3 3.1 23 216-238 3-25 (175)
449 COG2842 Uncharacterized ATPase 91.4 3.7 8E-05 44.3 13.3 95 216-319 95-189 (297)
450 PRK15115 response regulator Gl 91.4 1.4 3E-05 53.2 12.0 46 189-238 135-180 (444)
451 TIGR03263 guanyl_kin guanylate 91.4 0.15 3.3E-06 52.6 3.2 23 216-238 2-24 (180)
452 cd02021 GntK Gluconate kinase 91.3 0.13 2.9E-06 51.1 2.6 22 217-238 1-22 (150)
453 PF03308 ArgK: ArgK protein; 91.3 0.3 6.6E-06 51.5 5.1 64 196-263 14-77 (266)
454 cd02028 UMPK_like Uridine mono 91.3 0.14 2.9E-06 52.6 2.6 22 217-238 1-22 (179)
455 PF13306 LRR_5: Leucine rich r 91.2 1.2 2.5E-05 42.9 9.1 62 1110-1173 6-67 (129)
456 PF13479 AAA_24: AAA domain 91.2 0.54 1.2E-05 49.8 7.2 20 216-235 4-23 (213)
457 COG1124 DppF ABC-type dipeptid 91.2 0.17 3.6E-06 52.5 3.1 24 214-237 32-55 (252)
458 cd03369 ABCC_NFT1 Domain 2 of 91.2 1.7 3.8E-05 45.9 11.1 23 215-237 34-56 (207)
459 COG1224 TIP49 DNA helicase TIP 91.2 0.32 7E-06 53.0 5.2 55 187-245 38-95 (450)
460 cd03243 ABC_MutS_homologs The 91.2 0.13 2.8E-06 54.1 2.4 22 216-237 30-51 (202)
461 COG2019 AdkA Archaeal adenylat 91.1 0.19 4E-06 48.6 3.1 23 215-237 4-26 (189)
462 PRK00279 adk adenylate kinase; 91.1 0.73 1.6E-05 49.1 8.1 21 217-237 2-22 (215)
463 cd03213 ABCG_EPDR ABCG transpo 91.1 1.2 2.6E-05 46.5 9.5 24 215-238 35-58 (194)
464 COG1936 Predicted nucleotide k 91.1 0.17 3.7E-06 49.4 2.8 20 217-236 2-21 (180)
465 TIGR00764 lon_rel lon-related 91.0 0.44 9.5E-06 58.9 7.1 75 188-272 18-92 (608)
466 PRK05688 fliI flagellum-specif 91.0 0.77 1.7E-05 53.5 8.6 86 215-304 168-267 (451)
467 KOG0736 Peroxisome assembly fa 91.0 2.4 5.1E-05 51.4 12.5 175 190-388 403-599 (953)
468 PF13481 AAA_25: AAA domain; P 91.0 0.9 1.9E-05 47.5 8.6 41 216-256 33-81 (193)
469 PRK03846 adenylylsulfate kinas 91.0 0.2 4.4E-06 52.4 3.7 26 213-238 22-47 (198)
470 PRK06936 type III secretion sy 91.0 0.51 1.1E-05 54.7 7.1 87 214-304 161-261 (439)
471 cd02020 CMPK Cytidine monophos 91.0 0.15 3.2E-06 50.6 2.5 22 217-238 1-22 (147)
472 PRK07721 fliI flagellum-specif 91.0 0.64 1.4E-05 54.5 8.0 88 214-304 157-257 (438)
473 CHL00206 ycf2 Ycf2; Provisiona 90.8 1.9 4.1E-05 58.2 12.6 27 214-240 1629-1655(2281)
474 TIGR03305 alt_F1F0_F1_bet alte 90.8 0.44 9.5E-06 55.5 6.4 90 214-304 137-241 (449)
475 PF00560 LRR_1: Leucine Rich R 90.8 0.12 2.6E-06 31.6 1.1 19 1142-1161 2-20 (22)
476 COG0194 Gmk Guanylate kinase [ 90.8 0.36 7.7E-06 48.1 4.8 25 215-239 4-28 (191)
477 cd00820 PEPCK_HprK Phosphoenol 90.8 0.24 5.2E-06 45.0 3.4 22 215-236 15-36 (107)
478 PF13245 AAA_19: Part of AAA d 90.8 0.36 7.7E-06 41.1 4.2 22 216-237 11-33 (76)
479 PF03205 MobB: Molybdopterin g 90.8 0.18 4E-06 49.0 2.9 39 216-255 1-39 (140)
480 PRK13947 shikimate kinase; Pro 90.8 0.17 3.6E-06 51.8 2.8 22 217-238 3-24 (171)
481 TIGR03881 KaiC_arch_4 KaiC dom 90.8 1.3 2.8E-05 47.8 9.8 41 213-255 18-58 (229)
482 PRK00300 gmk guanylate kinase; 90.8 0.2 4.3E-06 53.1 3.3 24 215-238 5-28 (205)
483 PRK00409 recombination and DNA 90.7 0.76 1.6E-05 58.6 9.0 178 214-411 326-523 (782)
484 KOG0735 AAA+-type ATPase [Post 90.7 2.8 6.1E-05 50.3 12.5 156 189-365 668-848 (952)
485 PRK12339 2-phosphoglycerate ki 90.7 0.21 4.7E-06 51.7 3.4 24 215-238 3-26 (197)
486 cd02029 PRK_like Phosphoribulo 90.7 0.7 1.5E-05 49.5 7.2 78 217-296 1-85 (277)
487 PF03193 DUF258: Protein of un 90.6 0.4 8.6E-06 47.3 5.0 36 195-239 24-59 (161)
488 PRK07276 DNA polymerase III su 90.6 9.3 0.0002 42.2 16.0 69 294-363 103-173 (290)
489 PRK08533 flagellar accessory p 90.6 1 2.2E-05 48.4 8.5 49 214-266 23-71 (230)
490 PF08477 Miro: Miro-like prote 90.5 0.22 4.7E-06 47.2 3.1 22 218-239 2-23 (119)
491 TIGR01041 ATP_syn_B_arch ATP s 90.5 0.51 1.1E-05 55.3 6.7 91 214-304 140-247 (458)
492 cd04106 Rab23_lke Rab23-like s 90.5 2.1 4.5E-05 43.1 10.5 21 218-238 3-23 (162)
493 TIGR01420 pilT_fam pilus retra 90.5 0.48 1E-05 54.4 6.3 112 215-338 122-233 (343)
494 PRK11388 DNA-binding transcrip 90.5 0.64 1.4E-05 58.8 8.1 129 189-334 326-466 (638)
495 PRK07196 fliI flagellum-specif 90.5 0.62 1.3E-05 54.2 7.2 25 214-238 154-178 (434)
496 cd00071 GMPK Guanosine monopho 90.4 0.19 4.2E-06 48.8 2.7 21 218-238 2-22 (137)
497 PLN02348 phosphoribulokinase 90.4 0.32 7E-06 55.1 4.7 25 213-237 47-71 (395)
498 PRK14737 gmk guanylate kinase; 90.4 0.27 5.8E-06 50.6 3.8 25 214-238 3-27 (186)
499 TIGR03522 GldA_ABC_ATP gliding 90.4 1.6 3.5E-05 49.2 10.4 24 215-238 28-51 (301)
500 PRK10416 signal recognition pa 90.4 1.3 2.8E-05 49.9 9.5 25 214-238 113-137 (318)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-82 Score=782.08 Aligned_cols=611 Identities=29% Similarity=0.465 Sum_probs=498.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCCCCCCCc
Q 000660 25 VLFFARQKEIEADLMRWANMLEMIKAVLDDAEEKRRTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFRRRLPLGNGEPAA 104 (1367)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~lD~~~~~~~~~~~~~~~~~~~~ 104 (1367)
.+++....|+++.+..|++.|..++.+++||++++.....+..|.+.+++++|++||.++.|..+....+...
T Consensus 17 ~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~------- 89 (889)
T KOG4658|consen 17 NRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAND------- 89 (889)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------
Confidence 3445556788999999999999999999999999998899999999999999999999999999887654321
Q ss_pred CCCCCCCCCCCCcccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHHhhcccCCccccCCCCC--CCCCCCCCCC
Q 000660 105 AHDQPSSSHTRPSKLRKFIHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNLLDLKESSAGGS--KKASQRPETT 182 (1367)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 182 (1367)
. ........+.. |+. .+.++.+..+..+.+++..+......++......... +......++.
T Consensus 90 -~------l~~~~~~~~~~--c~~-------~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~ 153 (889)
T KOG4658|consen 90 -L------LSTRSVERQRL--CLC-------GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETR 153 (889)
T ss_pred -H------hhhhHHHHHHH--hhh-------hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccC
Confidence 0 00000111111 211 3456677777777777777777766665443221111 1111223344
Q ss_pred CccccCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcc-cccccceEEEEEeCCccCHHH
Q 000660 183 SLVDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VQDHFDLKAWTCVSDDFDVKR 261 (1367)
Q Consensus 183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~ 261 (1367)
+...+.. ||.+..++++.+.|.+++ ..+++|+||||+||||||+.++|+.. ++.+|+.++||+||++++...
T Consensus 154 ~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~ 226 (889)
T KOG4658|consen 154 PIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRK 226 (889)
T ss_pred CCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHh
Confidence 4445555 999999999999998763 28999999999999999999999987 999999999999999999999
Q ss_pred HHHHHHHHhhhcCCC-CCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHHhh
Q 000660 262 LTKTILTSIVASQNV-GDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEI 340 (1367)
Q Consensus 262 ~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 340 (1367)
++.+|++.++..... .....++++..|.+.|++|||+|||||||+. .+|+.+..++|....||||++|||++.|+..
T Consensus 227 iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~ 304 (889)
T KOG4658|consen 227 IQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGR 304 (889)
T ss_pred HHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhc
Confidence 999999999874432 2334578999999999999999999999998 6799999999999999999999999999998
Q ss_pred -hCCCCceeCCCCChHHHHHHHHhhhcC----CcchHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhchhh
Q 000660 341 -MGTVPSYQLKKLSDNDCLAVFAQHSLG----SHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIW 415 (1367)
Q Consensus 341 -~~~~~~~~l~~L~~~~~~~lf~~~~~~----~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~ 415 (1367)
+++...++++.|+++|||+||++.||. ..+.++++|++++++|+|+|||++++|+.|+.+++.++|+++.+...+
T Consensus 305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s 384 (889)
T KOG4658|consen 305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS 384 (889)
T ss_pred cccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence 778889999999999999999999987 345589999999999999999999999999999999999999987655
Q ss_pred hc----cccccCchHHHHHhhhCCChhHHHHhhhhccCCCCcccCHHHHHHHHHHcCCccCCCCCCChHHHHHHHHHHHH
Q 000660 416 EL----SEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELR 491 (1367)
Q Consensus 416 ~~----~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~ 491 (1367)
.+ ++..+.++++|++||+.||+++|.||+|||+||+||+|+++.|+.+||||||+++..++.+++++|++|+.+|+
T Consensus 385 ~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 385 SLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred cccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 42 23356899999999999999999999999999999999999999999999999987778899999999999999
Q ss_pred hcCcccccc--CCCCceeehHHHHHHHHHhhc-----cceEEeeccc--ccccccccCCceeEEEEEeCCcccccccccc
Q 000660 492 SRSFLQQSA--TDASLFVMHDLINDLARWAAG-----ETYFTLEYTS--EVNKQQCFSRNLRHLSYIRGDYDGVQRFGDL 562 (1367)
Q Consensus 492 ~~~ll~~~~--~~~~~~~mhdlv~~~a~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~ 562 (1367)
+++|++..+ +....|+|||+|||||.++++ ++..++.... ........+..+||++++.+.... ...-
T Consensus 465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~ 541 (889)
T KOG4658|consen 465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGS 541 (889)
T ss_pred HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCC
Confidence 999999865 345789999999999999999 4544444320 001122334678999998875422 2334
Q ss_pred ccCCcccEEeeccccCCCCCCCCcccccccc-CCCccceEEcCCCC-ccccCccccCceecCCCCcchhhHHhhhhcCCC
Q 000660 563 YDIQHLRTFLPVMLTNSGPGYLAPSILPKLL-KPQRLRAFSLRGYH-IFELPDSVGDLSTDGSSSREAETEMGMLDMLKP 640 (1367)
Q Consensus 563 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~-i~~lP~~i~~L~~~~~~~~~~~~~~~~l~~L~~ 640 (1367)
..+++|+||+...... ....+..++| .++.||+|||++|. +.+||++|++|.
T Consensus 542 ~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li--------------------- 595 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV--------------------- 595 (889)
T ss_pred CCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh---------------------
Confidence 4566899998765431 1234556677 89999999999776 899999999998
Q ss_pred CCCcceeEEcccCCCCCCcccCCCCCCcccEEEEecCCCCCCCCC-CCCCCCCCceeecCC
Q 000660 641 HTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTALPS-VGQLPSLKHLVVCGM 700 (1367)
Q Consensus 641 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~Ls~~~~~~~lp~-l~~L~~L~~L~l~~~ 700 (1367)
+||+|++++..+..+|..+++ |..|.+|++..+.....+|. ...|++||+|.+...
T Consensus 596 --~LryL~L~~t~I~~LP~~l~~--Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 596 --HLRYLDLSDTGISHLPSGLGN--LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred --hhhcccccCCCccccchHHHH--HHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 999999999999999999987 99999999999987777885 555999999998754
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.7e-62 Score=643.97 Aligned_cols=739 Identities=19% Similarity=0.268 Sum_probs=487.1
Q ss_pred HHHHHHHHHHHHHHhhcccCCccccCC------CCCCCCCCCCCCCCccccCcccccchhHHHHHHHHhcCCCCCCCCce
Q 000660 143 SKIKEIDSRFQEIVTKKNLLDLKESSA------GGSKKASQRPETTSLVDEAKVYGRETEKKDVVELLLRDDLSNDGGFS 216 (1367)
Q Consensus 143 ~~i~~~~~~l~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~ 216 (1367)
.+++++++.+.+++..... ....... .....+......++..+...+|||+.+++++..+|.-. ..+++
T Consensus 134 ~~~~~w~~al~~~~~~~g~-~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~~ 208 (1153)
T PLN03210 134 DEKIQWKQALTDVANILGY-HSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----SEEVR 208 (1153)
T ss_pred hHHHHHHHHHHHHhCcCce-ecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----cCceE
Confidence 4678888888887765431 1111000 00011111112223334567999999999999988532 34689
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEe---CCc-----------cC-HHHHHHHHHHHhhhcCCCCCCCh
Q 000660 217 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV---SDD-----------FD-VKRLTKTILTSIVASQNVGDPSL 281 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~-----------~~-~~~~~~~il~~l~~~~~~~~~~~ 281 (1367)
+|+||||||+||||||+++|+ ++..+|+..+|+.. +.. ++ ...++++++.++...........
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~ 286 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL 286 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH
Confidence 999999999999999999998 56778988887742 111 11 12455566666543322111122
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHHhhhCCCCceeCCCCChHHHHHHH
Q 000660 282 NSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDNDCLAVF 361 (1367)
Q Consensus 282 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf 361 (1367)
..+++.+++||+||||||||+. ..|+.+.....+.++||+||||||++.++..++..++|+++.|++++||+||
T Consensus 287 ----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF 360 (1153)
T PLN03210 287 ----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMF 360 (1153)
T ss_pred ----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHH
Confidence 4567888999999999999876 6788888766667889999999999999987777789999999999999999
Q ss_pred HhhhcC---CcchHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhchhhhccccccCchHHHHHhhhCCCh-
Q 000660 362 AQHSLG---SHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPP- 437 (1367)
Q Consensus 362 ~~~~~~---~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~- 437 (1367)
+++||+ .++.+.+++++|+++|+|+|||++++|+.|+++ +..+|+.++++..+.. ...|.++|++||++|++
T Consensus 361 ~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~ 436 (1153)
T PLN03210 361 CRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNK 436 (1153)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhccCcc
Confidence 999997 234678999999999999999999999999987 6899999998765433 24799999999999986
Q ss_pred hHHHHhhhhccCCCCcccCHHHHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhcCccccccCCCCceeehHHHHHHHH
Q 000660 438 TLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSRSFLQQSATDASLFVMHDLINDLAR 517 (1367)
Q Consensus 438 ~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~mhdlv~~~a~ 517 (1367)
..|.||++||+||.+..++ .+..|++.+.... +..++.|+++||++... ..+.|||++|+||+
T Consensus 437 ~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r 499 (1153)
T PLN03210 437 KDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGK 499 (1153)
T ss_pred chhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHH
Confidence 5999999999999886443 4677887765432 12389999999998753 46999999999999
Q ss_pred Hhhccce-------EEeecc--cccccccccCCceeEEEEEeCCccccc-cccccccCCcccEEeeccccCCCCCCCCcc
Q 000660 518 WAAGETY-------FTLEYT--SEVNKQQCFSRNLRHLSYIRGDYDGVQ-RFGDLYDIQHLRTFLPVMLTNSGPGYLAPS 587 (1367)
Q Consensus 518 ~~~~~~~-------~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~-~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~ 587 (1367)
++++++. +.+... ...-.......+++++++......... ....+..+++||+|................
T Consensus 500 ~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~ 579 (1153)
T PLN03210 500 EIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWH 579 (1153)
T ss_pred HHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceee
Confidence 9987663 111110 000001122356777776544322111 123466788888875533211011111223
Q ss_pred ccccccC-CCccceEEcCCCCccccCccccCceecCCCCcchhhHHhhhhcCCCCCCcceeEEcccCCCCCCcccCCCCC
Q 000660 588 ILPKLLK-PQRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSF 666 (1367)
Q Consensus 588 ~~~~~~~-l~~Lr~L~L~~~~i~~lP~~i~~L~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~lp~~~~~~~l 666 (1367)
+++++.. ...||+|++.++.++.+|..+. +.+|+.|++.++....+|..+.. +
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~------------------------~~~L~~L~L~~s~l~~L~~~~~~--l 633 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNFR------------------------PENLVKLQMQGSKLEKLWDGVHS--L 633 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcCC------------------------ccCCcEEECcCcccccccccccc--C
Confidence 3444443 4569999999999999998762 24899999999988888877654 8
Q ss_pred CcccEEEEecCCCCCCCCCCCCCCCCCceeecCCCCceeeCccccCCCCCCCccccceecccccccccccccCCCCCCCC
Q 000660 667 SNLVTLKFKNCDMCTALPSVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVE 746 (1367)
Q Consensus 667 ~~L~~L~Ls~~~~~~~lp~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 746 (1367)
++|+.|+|++|..+..+|.++.+++|+.|++++|..+..+|..+ ..+++|+.|.+.+|..++.+. .. .
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si------~~L~~L~~L~L~~c~~L~~Lp-----~~-i 701 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI------QYLNKLEDLDMSRCENLEILP-----TG-I 701 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh------hccCCCCEEeCCCCCCcCccC-----Cc-C
Confidence 99999999998888889999999999999999988777766432 235566666666655554432 11 1
Q ss_pred CcccccccccccccccccCCCCCCCcccEEEEecccCcc-cccCCCCCccEEEEcCCCcceeecccCCCCCccccccccc
Q 000660 747 GFPKLRELHILKCSKLKGTFPEHLPALEMLVIEGCEELL-VSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDA 825 (1367)
Q Consensus 747 ~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~ 825 (1367)
.+++|+.|++++|..+. .+|...++|+.|+++++.... .....+
T Consensus 702 ~l~sL~~L~Lsgc~~L~-~~p~~~~nL~~L~L~~n~i~~lP~~~~l---------------------------------- 746 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLK-SFPDISTNISWLDLDETAIEEFPSNLRL---------------------------------- 746 (1153)
T ss_pred CCCCCCEEeCCCCCCcc-ccccccCCcCeeecCCCccccccccccc----------------------------------
Confidence 45566666666665443 444444444444444433110 000012
Q ss_pred cccchhcCCCchhhhhhHHHhhcccccccccccccccccccCCcceEEecCCCCcccchhHHHHHHHhhhhhcccccceE
Q 000660 826 SNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYI 905 (1367)
Q Consensus 826 ~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~~~~~~L~~L 905 (1367)
++|++|.+.++.... +..... .........+++|+.|
T Consensus 747 -----------------------------------------~~L~~L~l~~~~~~~-l~~~~~-~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 747 -----------------------------------------ENLDELILCEMKSEK-LWERVQ-PLTPLMTMLSPSLTRL 783 (1153)
T ss_pred -----------------------------------------cccccccccccchhh-cccccc-ccchhhhhccccchhe
Confidence 233333333221100 000000 0000011123577788
Q ss_pred EecCCCccccCCcccCCCCCccEEEEccCCCccccCCCCCcccccEEEeccCCccccCccccccCCCCCccEEEEecCCC
Q 000660 906 ELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRS 985 (1367)
Q Consensus 906 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 985 (1367)
++++|.....+|..++++++|+.|++++|..++.+|....+++|+.|++++|..+..+|..
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~------------------- 844 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI------------------- 844 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc-------------------
Confidence 8888877777787788888888888888877777765445666666666666543322210
Q ss_pred cccccccCCccccceeeeecCCCCccccccccccccCCCcccccccCCcceEEeccCCCccccccCCCchhhhhccccCC
Q 000660 986 LTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLESLEVGN 1065 (1367)
Q Consensus 986 l~~~~~~~lp~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~ 1065 (1367)
.++|+.|++++|.+
T Consensus 845 --------------------~~nL~~L~Ls~n~i---------------------------------------------- 858 (1153)
T PLN03210 845 --------------------STNISDLNLSRTGI---------------------------------------------- 858 (1153)
T ss_pred --------------------ccccCEeECCCCCC----------------------------------------------
Confidence 12333333333322
Q ss_pred CCCCCceeEEccCCchhhHHhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCcccc
Q 000660 1066 LPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSF 1132 (1367)
Q Consensus 1066 lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 1132 (1367)
+.+|..+..+++|+.|++++|+....+|..+..+++|+.|++++|..+..+
T Consensus 859 ----------------~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 859 ----------------EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ----------------ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 124555667778888888887777777777888889999999998766544
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-41 Score=384.34 Aligned_cols=275 Identities=37% Similarity=0.632 Sum_probs=226.2
Q ss_pred cchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhh
Q 000660 193 RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVA 272 (1367)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 272 (1367)
||.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998742 468999999999999999999999977789999999999999999999999999999987
Q ss_pred cCCC--CCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHHhhhCC-CCceeC
Q 000660 273 SQNV--GDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGT-VPSYQL 349 (1367)
Q Consensus 273 ~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l 349 (1367)
.... ...+.+.....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 6431 4567788999999999999999999999887 6898888888777789999999999999877664 678999
Q ss_pred CCCChHHHHHHHHhhhcCC----cchHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhchhhhccc---ccc
Q 000660 350 KKLSDNDCLAVFAQHSLGS----HKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSE---KRC 422 (1367)
Q Consensus 350 ~~L~~~~~~~lf~~~~~~~----~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~~~ 422 (1367)
++|++++|++||++.++.. .+..++.+++|+++|+|+||||+++|++|+.+.+..+|++++++..+...+ ...
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999863 345678899999999999999999999997655678899988775554432 346
Q ss_pred CchHHHHHhhhCCChhHHHHhhhhccCCCCcccCHHHHHHHHHHcCCccCC
Q 000660 423 GIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHK 473 (1367)
Q Consensus 423 ~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~~~~~ 473 (1367)
.+..++.+||+.||+++|+||.|||+||+++.|+++.++++|+|+|||+..
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 789999999999999999999999999999999999999999999999753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-37 Score=409.03 Aligned_cols=524 Identities=16% Similarity=0.178 Sum_probs=347.1
Q ss_pred CCcceeEEcccCCC-CCCcccCCCCCCcccEEEEecCCCCCCCC-C-CCCCCCCCceeecCCCCceeeCccccCCCCCCC
Q 000660 642 TNLEQFCIKGYGGM-KFPTWLGDSSFSNLVTLKFKNCDMCTALP-S-VGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIP 718 (1367)
Q Consensus 642 ~~L~~L~l~~~~~~-~lp~~~~~~~l~~L~~L~Ls~~~~~~~lp-~-l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 718 (1367)
.+++.|+++++... .+|..+.. +++|++|+|++|.....+| . +..+++|++|++++|.....+|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~--l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----------- 135 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFR--LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP----------- 135 (968)
T ss_pred CcEEEEEecCCCccccCChHHhC--CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-----------
Confidence 36777777776643 23444443 7777777777777655666 2 4477777777777764222111
Q ss_pred ccccceecccccccccccccCCCCCCCCCcccccccccccccccccCCCC---CCCcccEEEEeccc---CcccccCCCC
Q 000660 719 FPCLKTLLFENMQEWEDWIPHGSSQGVEGFPKLRELHILKCSKLKGTFPE---HLPALEMLVIEGCE---ELLVSVSSLP 792 (1367)
Q Consensus 719 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~---~l~~~~~~l~ 792 (1367)
.+.+++|++|++++|. +.+.+|. .+++|+.|++++|. .++..+.+++
T Consensus 136 --------------------------~~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 188 (968)
T PLN00113 136 --------------------------RGSIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188 (968)
T ss_pred --------------------------ccccCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCc
Confidence 1236777788887774 4445553 46677777777765 2344566677
Q ss_pred CccEEEEcCCCcceeecccCCCCCccccccccccccchhcCCCchhhhhhHHHhhcccccccccccccccccccCCcceE
Q 000660 793 ALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRL 872 (1367)
Q Consensus 793 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L 872 (1367)
+|++|++++|. +.+.+|..+.++++|+.+++..|.+....+..+..+++|++|
T Consensus 189 ~L~~L~L~~n~---------------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 189 SLEFLTLASNQ---------------------------LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCeeeccCCC---------------------------CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 77777777764 334455566666666666666666655555555666666666
Q ss_pred EecCCCCcccchhHHHHHHHhhhhhcccccceEEecCCCccccCCcccCCCCCccEEEEccCCCccccCC-CCCcccccE
Q 000660 873 TIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPE-VALPSKLKT 951 (1367)
Q Consensus 873 ~L~~~~~L~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~ 951 (1367)
++++|.-...++.. ....++|++|++++|.+.+.+|..+..+++|++|++++|.....+|. +..+++|+.
T Consensus 242 ~L~~n~l~~~~p~~---------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 242 DLVYNNLTGPIPSS---------LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred ECcCceeccccChh---------HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 66654322122110 11224566666666666556666666666666666666654444442 455566666
Q ss_pred EEeccCCccccCccccccCCCCCccEEEEecCCCcccccccCCccccceeeeecCCCCccccccccccccCCCccccccc
Q 000660 952 IHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTS 1031 (1367)
Q Consensus 952 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~lp~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 1031 (1367)
|++++|.+.+.+|..+ ..+++|+.|++.+|.... .+|.. +..+++|+.+++++|.+.+..+...
T Consensus 313 L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~-----~~p~~-----l~~~~~L~~L~Ls~n~l~~~~p~~~---- 376 (968)
T PLN00113 313 LHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSG-----EIPKN-----LGKHNNLTVLDLSTNNLTGEIPEGL---- 376 (968)
T ss_pred EECCCCccCCcCChhH--hcCCCCCEEECcCCCCcC-----cCChH-----HhCCCCCcEEECCCCeeEeeCChhH----
Confidence 6666666555555443 445556666665553211 22322 4445555555555555443222110
Q ss_pred CCcceEEeccCCCccccccCCCchhhhhccccCCCCCCCceeEEccCCchhhHHhhhccCCccceeeecccCCcccCccc
Q 000660 1032 SLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSG 1111 (1367)
Q Consensus 1032 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 1111 (1367)
. -.++++.|.+.++.....+|..+..+++|+.|++++|.+.+.+|..
T Consensus 377 ---------------------------~------~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 377 ---------------------------C------SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred ---------------------------h------CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 0 0135666777666666678888899999999999999999888988
Q ss_pred cCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCcEEEccCCCCCCCCc-CCCCCCCcc
Q 000660 1112 LHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLE-EDGLPTNLH 1190 (1367)
Q Consensus 1112 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~ 1190 (1367)
+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|.....++ .+..+++|+
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 502 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELM 502 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccC
Confidence 9999999999999999888888888888999999999999888888765 45889999999998665554 356788999
Q ss_pred EEEecCCcchhhhhhhhcccCCCCCcccEEEecCCCCcCCcCcchhhhhcc----cCCCCCCCCeEEecCCCCCcccccc
Q 000660 1191 SLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGA----ALPLLASLTSLEIYNFPNLERLSSS 1266 (1367)
Q Consensus 1191 ~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~l~~~~n~l~~----~~~~l~~L~~L~l~~~~~l~~l~~~ 1266 (1367)
.|++++|..... .+..+..+++|+.|++++| .+++ .+..+++|+.|++++|...+.+|..
T Consensus 503 ~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N------------~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 503 QLKLSENKLSGE----IPDELSSCKKLVSLDLSHN------------QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred EEECcCCcceee----CChHHcCccCCCEEECCCC------------cccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 999999854432 2234556788888888776 2333 3446889999999999888889999
Q ss_pred cccCCCCcEEeecCCCCCcCCCCCCCccccceeeccCChhh
Q 000660 1267 IVDLQNLTSLYLKNCPKLKYFPEKGLPSSLLKLSIYDCPLI 1307 (1367)
Q Consensus 1267 ~~~l~~L~~L~ls~n~~l~~lp~~~~~~sL~~L~i~~c~~l 1307 (1367)
+.++++|+.|++++|+..+.+|..+.+.++....+.+||.+
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred HhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 99999999999999988888998777777777777777754
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-35 Score=394.77 Aligned_cols=525 Identities=17% Similarity=0.199 Sum_probs=323.0
Q ss_pred ceeEEEEEeCCccccccccccccCCcccEEeeccccCCCCCCCCcccccccc-CCCccceEEcCCCCcc-ccCccccCce
Q 000660 542 NLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPGYLAPSILPKLL-KPQRLRAFSLRGYHIF-ELPDSVGDLS 619 (1367)
Q Consensus 542 ~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~-~lP~~i~~L~ 619 (1367)
+++.+.+..+..... ....+..+++|++|-.. .+.+...++.+++ .+++||+|+|++|.+. .+|. +.
T Consensus 70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls------~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~-- 138 (968)
T PLN00113 70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLS------NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GS-- 138 (968)
T ss_pred cEEEEEecCCCcccc-CChHHhCCCCCCEEECC------CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cc--
Confidence 566666654332111 11234455666666321 1222334455555 6666666666666654 2332 11
Q ss_pred ecCCCCcchhhHHhhhhcCCCCCCcceeEEcccCCC-CCCcccCCCCCCcccEEEEecCCCCCCCC-CCCCCCCCCceee
Q 000660 620 TDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGM-KFPTWLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPSLKHLVV 697 (1367)
Q Consensus 620 ~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~-~lp~~~~~~~l~~L~~L~Ls~~~~~~~lp-~l~~L~~L~~L~l 697 (1367)
+++|++|++++|... .+|..++. +++|++|+|++|.....+| .++++++|++|++
T Consensus 139 ---------------------l~~L~~L~Ls~n~~~~~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 139 ---------------------IPNLETLDLSNNMLSGEIPNDIGS--FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred ---------------------cCCCCEEECcCCcccccCChHHhc--CCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 236666666666554 45555554 6666666666666555555 5666666666666
Q ss_pred cCCCCceeeCccccCCCCCCCccccceecccccccccccccCCCCCCCCCcccccccccccccccccCCC---CCCCccc
Q 000660 698 CGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVEGFPKLRELHILKCSKLKGTFP---EHLPALE 774 (1367)
Q Consensus 698 ~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p---~~l~~L~ 774 (1367)
++|.....++ ..++.+++|+.|++.+|. +.+.+| ..+++|+
T Consensus 196 ~~n~l~~~~p-----------------------------------~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 196 ASNQLVGQIP-----------------------------------RELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLN 239 (968)
T ss_pred cCCCCcCcCC-----------------------------------hHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCC
Confidence 6664322222 223345555555555543 333344 2344555
Q ss_pred EEEEeccc---CcccccCCCCCccEEEEcCCCcceeecccCCCCCccccccccccccchhcCCCchhhhhhHHHhhcccc
Q 000660 775 MLVIEGCE---ELLVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKLEELILSTKE 851 (1367)
Q Consensus 775 ~L~l~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~ 851 (1367)
.|++++|. .++..+..+++|+.|++++|. +.+..|..+.++++|+.++++
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---------------------------l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK---------------------------LSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCe---------------------------eeccCchhHhhccCcCEEECc
Confidence 55555553 223345556666666666553 233444555555666666666
Q ss_pred cccccccccccccccCCcceEEecCCCCcccchhHHHHHHHhhhhhcccccceEEecCCCccccCCcccCCCCCccEEEE
Q 000660 852 QTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEI 931 (1367)
Q Consensus 852 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 931 (1367)
.|.+....+..+..+++|+.|+++++.-...++. .....++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV---------ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCCh---------hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence 6655555555556666777777766432222211 1112356777777777776667766777777777777
Q ss_pred ccCCCccccC-CCCCcccccEEEeccCCccccCccccccCCCCCccEEEEecCCCcccccccCCccccceeeeecCCCCc
Q 000660 932 YQCSSLVSFP-EVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLR 1010 (1367)
Q Consensus 932 ~~~~~l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~lp~~L~~L~l~~~~~L~ 1010 (1367)
++|.....+| .+..+++|+.|++++|.+.+.+|..+ ..+++|+.|++.+|.... .+|.. +.++++|+
T Consensus 364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~-----~~p~~-----~~~l~~L~ 431 (968)
T PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSG-----ELPSE-----FTKLPLVY 431 (968)
T ss_pred CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCEeee-----ECChh-----HhcCCCCC
Confidence 7776555555 34556667777777777666666554 456677777766653211 23333 55666777
Q ss_pred cccccccccccCCCcccccccCCcceEEeccCCCccccccCCCchhhhhccccCCCCCCCceeEEccCCchhhHHhhhcc
Q 000660 1011 TLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDN 1090 (1367)
Q Consensus 1011 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~lp~~L~~L~l~~~~~~~~~~~~~~~ 1090 (1367)
.+++++|.+.+..+.. ....++|+.|++++|.....+ |..+ -.++|+.|++.+|...+.+|..+.+
T Consensus 432 ~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~------p~~~-------~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 432 FLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGL------PDSF-------GSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred EEECcCCcccCccChh-hccCCCCcEEECcCceeeeec------Cccc-------ccccceEEECcCCccCCccChhhhh
Confidence 7777777766644332 223456777777766532211 1000 0146777888777777778888889
Q ss_pred CCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCcEEE
Q 000660 1091 NTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELT 1170 (1367)
Q Consensus 1091 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~ 1170 (1367)
+++|+.|++++|.+.+.+|..+.++++|++|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|+
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 577 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence 99999999999999998999999999999999999999999998888899999999999999999999999999999999
Q ss_pred ccCCCCCCCCcCCCCCCCccEEEecCCc
Q 000660 1171 IGRGVELPSLEEDGLPTNLHSLDIRGNM 1198 (1367)
Q Consensus 1171 l~~n~~~~~~~~~~~~~~L~~L~L~~n~ 1198 (1367)
+++|.....+|..+.+.++....+.+|+
T Consensus 578 ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 578 ISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred ccCCcceeeCCCcchhcccChhhhcCCc
Confidence 9999877777766655555555566664
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=6.8e-29 Score=259.11 Aligned_cols=473 Identities=21% Similarity=0.258 Sum_probs=289.6
Q ss_pred ccccCCCccceEEcCCCCccccCccccCceecCCCCcchhhHHhhhhcCCCCCCcceeEEcccCCCCCCcccCCCCCCcc
Q 000660 590 PKLLKPQRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNL 669 (1367)
Q Consensus 590 ~~~~~l~~Lr~L~L~~~~i~~lP~~i~~L~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L 669 (1367)
+++.++..|.+|++.++.+.++|++||.|. .++.|+.++++..++|..++. +.+|
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~l~-----------------------~l~~l~vs~n~ls~lp~~i~s--~~~l 116 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIGELE-----------------------ALKSLNVSHNKLSELPEQIGS--LISL 116 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHHHHH-----------------------HHHHhhcccchHhhccHHHhh--hhhh
Confidence 344478888999999999999999998886 788888888888888888876 8888
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCceeecCCCCceeeCccccCCCCCCCccccceecccccccccccccCCCCCCCCCcc
Q 000660 670 VTLKFKNCDMCTALPSVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVEGFP 749 (1367)
Q Consensus 670 ~~L~Ls~~~~~~~lp~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~ 749 (1367)
+.|+.+.|...+..++++++..|+.|+..+|. +...|. ++..+.
T Consensus 117 ~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~-----------------------------------~~~~~~ 160 (565)
T KOG0472|consen 117 VKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPE-----------------------------------DMVNLS 160 (565)
T ss_pred hhhhccccceeecCchHHHHhhhhhhhccccc-cccCch-----------------------------------HHHHHH
Confidence 89998888865555588888888888887764 444443 233455
Q ss_pred cccccccccccccccCCCCCCCcccEEEEecccCcccccCCCCCccEEEEcCCCcceeecccCCCCCccccccccccccc
Q 000660 750 KLRELHILKCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQV 829 (1367)
Q Consensus 750 ~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~ 829 (1367)
+|..|.+.++. ++ .+|+ ..-++..|++|+...+
T Consensus 161 ~l~~l~~~~n~-l~-~l~~------------------~~i~m~~L~~ld~~~N--------------------------- 193 (565)
T KOG0472|consen 161 KLSKLDLEGNK-LK-ALPE------------------NHIAMKRLKHLDCNSN--------------------------- 193 (565)
T ss_pred HHHHhhccccc-hh-hCCH------------------HHHHHHHHHhcccchh---------------------------
Confidence 66666666553 33 3332 1112444555544332
Q ss_pred hhcCCCchhhhhhHHHhhcccccccccccccccccccCCcceEEecCCCCcccchhHHHHHHHhhhhhcccccceEEecC
Q 000660 830 FLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRD 909 (1367)
Q Consensus 830 ~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 909 (1367)
..+.+|+.++.++.|..+++..|.+...| .|.++..|++|+++. +.++.++.+. ..-.+++..||+++
T Consensus 194 -~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~-N~i~~lpae~--------~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 194 -LLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGE-NQIEMLPAEH--------LKHLNSLLVLDLRD 261 (565)
T ss_pred -hhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcc-cHHHhhHHHH--------hcccccceeeeccc
Confidence 34567778888888888888888887776 456677777777766 4555554432 12236788888888
Q ss_pred CCccccCCcccCCCCCccEEEEccCCCccccCCCCCcccccEEEeccCCccccCcccccc-CCCCCccEEEEecCCCccc
Q 000660 910 CQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPSKLKTIHISSCDALKLLPEAWMC-DTNSSLEILEILSCRSLTY 988 (1367)
Q Consensus 910 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~ 988 (1367)
|++ .++|+.+.-+.+|+.||+++|....-.+.++.+ .|+.|-+.||++-. +...+.. +.-.-|+.|.- .+
T Consensus 262 Nkl-ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs----~~-- 332 (565)
T KOG0472|consen 262 NKL-KEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS----KI-- 332 (565)
T ss_pred ccc-ccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH----hh--
Confidence 874 577888888888888888888544333367777 78888888887432 2211110 00001111110 00
Q ss_pred ccccCCccccceeeeecCCCCccccccccccccCCCcccccccCCcceEEeccCCCccccccCCCchhhhhccccCCCCC
Q 000660 989 IAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPP 1068 (1367)
Q Consensus 989 ~~~~~lp~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~lp~ 1068 (1367)
.|..+..- .+...+... .+...+++.-.. .
T Consensus 333 ----------------~~dglS~s--e~~~e~~~t-------------------------~~~~~~~~~~~~-------i 362 (565)
T KOG0472|consen 333 ----------------KDDGLSQS--EGGTETAMT-------------------------LPSESFPDIYAI-------I 362 (565)
T ss_pred ----------------ccCCCCCC--cccccccCC-------------------------CCCCcccchhhh-------h
Confidence 00000000 000000000 000000000000 0
Q ss_pred CCceeEEccCCchhhHHhhhccCC---ccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceE
Q 000660 1069 SLKSLEVLSCSKLESIAERLDNNT---SLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKF 1145 (1367)
Q Consensus 1069 ~L~~L~l~~~~~~~~~~~~~~~l~---~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 1145 (1367)
+.+.|.+.+ ..++.+|....... -....+++.|++.. +|..+..+..+.+.-+.+|+..+.+|..+..+++|..|
T Consensus 363 ~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 363 TTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFL 440 (565)
T ss_pred hhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceee
Confidence 111122111 11233444333222 26778888888776 77777777777776666666777777777778888888
Q ss_pred EEeccCCCCcccccCCCCCCCcEEEccCCCCCCCCcCCC-CCCCccEEEecCCcchhhhhhhhcccCCCCCcccEEEecC
Q 000660 1146 NISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDG-LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISE 1224 (1367)
Q Consensus 1146 ~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 1224 (1367)
++++|. +..+|..++.+..|+.|+++.|++ ..+|.+. .+..|+.+-.++|
T Consensus 441 ~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~n--------------------------- 491 (565)
T KOG0472|consen 441 DLSNNL-LNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNN--------------------------- 491 (565)
T ss_pred ecccch-hhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccc---------------------------
Confidence 888776 667777788888888888888843 3333322 2222232322223
Q ss_pred CCCcCCcCcchhhhhcccCCCCCCCCeEEecCCCCCcccccccccCCCCcEEeecCCC
Q 000660 1225 CDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCP 1282 (1367)
Q Consensus 1225 ~~~~l~~l~~~~n~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ls~n~ 1282 (1367)
.+..++.+ .+.++.+|..|++.+| .+..+|+.++++++|++|++++||
T Consensus 492 ---qi~~vd~~------~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 492 ---QIGSVDPS------GLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ---cccccChH------HhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 23333333 2445788999999885 678899999999999999999997
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-26 Score=251.74 Aligned_cols=363 Identities=17% Similarity=0.184 Sum_probs=267.1
Q ss_pred hcccccccccccccccccccCCcceEEecCCCCcccchhHHHHHHHhhhhhcccccceEEecCCCccccCCcccCCCCCc
Q 000660 847 LSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSL 926 (1367)
Q Consensus 847 ~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L 926 (1367)
.+++++|.+.......|.++++|+++++.+ +.|+.+|..+ ....+|+.|+|.+|.+...-.+.+..++.|
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~---------~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFG---------HESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeecc-chhhhccccc---------ccccceeEEeeeccccccccHHHHHhHhhh
Confidence 467888888888888899999999999987 6677665432 122479999999999888777788889999
Q ss_pred cEEEEccCCCccccC--CCCCcccccEEEeccCCccccCccccccCCCCCccEEEEecCCCcccccccCCccccceeeee
Q 000660 927 REIEIYQCSSLVSFP--EVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIH 1004 (1367)
Q Consensus 927 ~~L~L~~~~~l~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~lp~~L~~L~l~ 1004 (1367)
+.|||+.| .+..+| .+..-.++++|++++|.+...-...| .++.+|..|.++.+. ++ .+|... +.
T Consensus 152 rslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLsrNr-it-----tLp~r~----Fk 218 (873)
T KOG4194|consen 152 RSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHF--DSLNSLLTLKLSRNR-IT-----TLPQRS----FK 218 (873)
T ss_pred hhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccc--cccchheeeecccCc-cc-----ccCHHH----hh
Confidence 99999999 444555 46666789999999999776555444 667788888888773 33 234321 77
Q ss_pred cCCCCccccccccccccCCCcccccccCCcceEEeccCCCccccccCCCchhhhhccccCCCCCCCceeEEccCCchhhH
Q 000660 1005 NCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLKSLEVLSCSKLESI 1084 (1367)
Q Consensus 1005 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~lp~~L~~L~l~~~~~~~~~ 1084 (1367)
++++|+.|++..|.+.. .+.+.+.+.+ +|+.|.+..+....--
T Consensus 219 ~L~~L~~LdLnrN~iri------------ve~ltFqgL~-------------------------Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRI------------VEGLTFQGLP-------------------------SLQNLKLQRNDISKLD 261 (873)
T ss_pred hcchhhhhhccccceee------------ehhhhhcCch-------------------------hhhhhhhhhcCccccc
Confidence 89999999999988764 2233333332 3333433333222222
Q ss_pred HhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCC
Q 000660 1085 AERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLT 1164 (1367)
Q Consensus 1085 ~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~ 1164 (1367)
...|..|.+++.|+|..|++...-..++.+|++|+.|++++|.+...-+.++..+++|++|+|++|.+...-+..|..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 24577888999999999999887777888899999999999988887788888889999999999998887788888899
Q ss_pred CCcEEEccCCCCCCCC-cCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEEEecCCCCcCCcCcchhhhhcccC
Q 000660 1165 SLQELTIGRGVELPSL-EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAAL 1243 (1367)
Q Consensus 1165 ~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~l~~~~n~l~~~~ 1243 (1367)
.|+.|+|++|.....- ..+..+++|++|||++|...+..-. ....|.++++|+.|.+.+| .+++++.. .+
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~gN--qlk~I~kr------Af 412 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTGN--QLKSIPKR------AF 412 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeecCc--eeeecchh------hh
Confidence 9999999999533222 2235678899999999865443322 3345677888888888877 56666654 66
Q ss_pred CCCCCCCeEEecCCCCCcccccccccCCCCcEEeec
Q 000660 1244 PLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLK 1279 (1367)
Q Consensus 1244 ~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ls 1279 (1367)
.+++.|+.|+|.+|.....-|..|..+ .|+.|.+.
T Consensus 413 sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 678888888888877666666777766 77776553
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2e-25 Score=243.71 Aligned_cols=358 Identities=16% Similarity=0.152 Sum_probs=182.9
Q ss_pred cccceEEecCCCccccCCcccCCCCCccEEEEccCCCccccCCCCCccc-ccEEEeccCCccccCccccccCCCCCccEE
Q 000660 900 CRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPSK-LKTIHISSCDALKLLPEAWMCDTNSSLEIL 978 (1367)
Q Consensus 900 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 978 (1367)
+.-+.|++++|.+...-+..|.++++|+++++..| .++.+|.++.... |+.|++.+|.+...-.... ..++.|+.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L--~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL--SALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHH--HhHhhhhhh
Confidence 45566777777766666666777777777777776 5566676655443 7777777776554333332 445666666
Q ss_pred EEecCCCcccccccCCccccceeeeecCCCCccccccccccccCCCcccccccCCcceEEeccCCCccccccCCCchhhh
Q 000660 979 EILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATL 1058 (1367)
Q Consensus 979 ~l~~~~~l~~~~~~~lp~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l 1058 (1367)
+++.+ .+..++...+|. -.+++.|+++.|.++...... +..+.+|-.|.++++..-+ +
T Consensus 155 DLSrN-~is~i~~~sfp~---------~~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNritt-----------L 212 (873)
T KOG4194|consen 155 DLSRN-LISEIPKPSFPA---------KVNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNRITT-----------L 212 (873)
T ss_pred hhhhc-hhhcccCCCCCC---------CCCceEEeecccccccccccc-ccccchheeeecccCcccc-----------c
Confidence 66655 333333333332 245666666666655422111 1111223333333221000 0
Q ss_pred hccccCCCCCCCceeEEccCCchhhH-HhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCC
Q 000660 1059 ESLEVGNLPPSLKSLEVLSCSKLESI-AERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGL 1137 (1367)
Q Consensus 1059 ~~l~~~~lp~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 1137 (1367)
.......+ +.|+.|++..+. +..+ ...|.++++|+.|.+..|.+...-...|..+.++++|+|..|++...-..++.
T Consensus 213 p~r~Fk~L-~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 213 PQRSFKRL-PKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred CHHHhhhc-chhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence 00000000 112222221111 1111 22345555555555555555544444455555555555555554444444445
Q ss_pred CccCcceEEEeccCCCCcccccCCCCCCCcEEEccCCCCCCCCc-CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCc
Q 000660 1138 PCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLE-EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSS 1216 (1367)
Q Consensus 1138 ~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~ 1216 (1367)
++++|+.|++|+|.+...-++....+++|++|+|++|......+ .+..+..|++|+|++|.. .......|..+++
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi----~~l~e~af~~lss 366 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI----DHLAEGAFVGLSS 366 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch----HHHHhhHHHHhhh
Confidence 55555555555555555555555555555555555554322211 123345555555555522 1122233444555
Q ss_pred ccEEEecCCCCcCCcCcchhhhhcc-------cCCCCCCCCeEEecCCCCCcccc-cccccCCCCcEEeecCCCCCcCCC
Q 000660 1217 LRHFKISECDDDMVSIPLEDKRLGA-------ALPLLASLTSLEIYNFPNLERLS-SSIVDLQNLTSLYLKNCPKLKYFP 1288 (1367)
Q Consensus 1217 L~~L~l~~~~~~l~~l~~~~n~l~~-------~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~ls~n~~l~~lp 1288 (1367)
|+.|++.+| .+++ .+.++++|+.|++.+| .++.|| ..|.++++|+.|+|.+|+ +.+|.
T Consensus 367 L~~LdLr~N------------~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSIq 432 (873)
T KOG4194|consen 367 LHKLDLRSN------------ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASIQ 432 (873)
T ss_pred hhhhcCcCC------------eEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc-ceeec
Confidence 555555443 3333 3446888888888885 456666 567788888888888884 66665
Q ss_pred CCCC-ccccceeecc
Q 000660 1289 EKGL-PSSLLKLSIY 1302 (1367)
Q Consensus 1289 ~~~~-~~sL~~L~i~ 1302 (1367)
...+ +-.|++|.+.
T Consensus 433 ~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 433 PNAFEPMELKELVMN 447 (873)
T ss_pred ccccccchhhhhhhc
Confidence 5444 3466666553
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=5.3e-25 Score=254.49 Aligned_cols=438 Identities=20% Similarity=0.215 Sum_probs=273.6
Q ss_pred CccceEEcCCCCccccCccccCceecCCCCcchhhHHhhhhcCCCCCCcceeEEcccCCCCCCcccCCCCCCcccEEEEe
Q 000660 596 QRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFK 675 (1367)
Q Consensus 596 ~~Lr~L~L~~~~i~~lP~~i~~L~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~Ls 675 (1367)
-+|+.||+++|.+..+|..|..+. +|+.|.++.|.+...|..... +.+|++|.|.
T Consensus 45 v~L~~l~lsnn~~~~fp~~it~l~-----------------------~L~~ln~s~n~i~~vp~s~~~--~~~l~~lnL~ 99 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQITLLS-----------------------HLRQLNLSRNYIRSVPSSCSN--MRNLQYLNLK 99 (1081)
T ss_pred eeeEEeeccccccccCCchhhhHH-----------------------HHhhcccchhhHhhCchhhhh--hhcchhheec
Confidence 348888888888888888886665 788888888888888866654 7888888888
Q ss_pred cCCCCCCCC-CCCCCCCCCceeecCCCCceeeCccccCCCCCCCccccceecccccccccccccCCCCCCCCCccccccc
Q 000660 676 NCDMCTALP-SVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVEGFPKLREL 754 (1367)
Q Consensus 676 ~~~~~~~lp-~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L 754 (1367)
+|. ...+| ++..+++|++|+++.|. ...+|.-.. .+..++.+...+... ...++... .+.+
T Consensus 100 ~n~-l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~------~lt~~~~~~~s~N~~---------~~~lg~~~-ik~~ 161 (1081)
T KOG0618|consen 100 NNR-LQSLPASISELKNLQYLDLSFNH-FGPIPLVIE------VLTAEEELAASNNEK---------IQRLGQTS-IKKL 161 (1081)
T ss_pred cch-hhcCchhHHhhhcccccccchhc-cCCCchhHH------hhhHHHHHhhhcchh---------hhhhcccc-chhh
Confidence 765 66777 78888888888888875 222221111 011122222221100 00011111 3344
Q ss_pred ccccccccccCCCCCCCcccE-EEEecccCcccccCCCCCccEEEEcCCCcceeecccCCCCCccccccccccccchhcC
Q 000660 755 HILKCSKLKGTFPEHLPALEM-LVIEGCEELLVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVG 833 (1367)
Q Consensus 755 ~l~~c~~l~~~~p~~l~~L~~-L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~ 833 (1367)
++.... +.+.++.....++. |++..|......+..+++|+.|....
T Consensus 162 ~l~~n~-l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~r-------------------------------- 208 (1081)
T KOG0618|consen 162 DLRLNV-LGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCER-------------------------------- 208 (1081)
T ss_pred hhhhhh-cccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhh--------------------------------
Confidence 443332 23344433334433 55554443333333444444443333
Q ss_pred CCchhhhhhHHHhhcccccccccccccccccccCCcceEEecCCCCcccchhHHHHHHHhhhhhcccccceEEecCCCcc
Q 000660 834 PLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDL 913 (1367)
Q Consensus 834 ~~~~~l~~L~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 913 (1367)
|.+..+ -..-++|+.|+...|+-.+.. ....+.+|+++++++|.+.
T Consensus 209 -------------------n~ls~l----~~~g~~l~~L~a~~n~l~~~~-----------~~p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 209 -------------------NQLSEL----EISGPSLTALYADHNPLTTLD-----------VHPVPLNLQYLDISHNNLS 254 (1081)
T ss_pred -------------------cccceE----EecCcchheeeeccCcceeec-----------cccccccceeeecchhhhh
Confidence 222111 123356777777765543221 1223468999999998864
Q ss_pred ccCCcccCCCCCccEEEEccCCCccccC-CCCCcccccEEEeccCCccccCccccccCCCCCccEEEEecCCCccccccc
Q 000660 914 VKLPQSSLSLSSLREIEIYQCSSLVSFP-EVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGV 992 (1367)
Q Consensus 914 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 992 (1367)
.+|++++.+.+|+.|+..+|.. ..+| .+....+|+.|.+..|.+. .+|... ..+.+|++|++..+ ++..++
T Consensus 255 -~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~l--e~~~sL~tLdL~~N-~L~~lp-- 326 (1081)
T KOG0618|consen 255 -NLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFL--EGLKSLRTLDLQSN-NLPSLP-- 326 (1081)
T ss_pred -cchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcc--cccceeeeeeehhc-cccccc--
Confidence 5679999999999999999855 5566 5677889999999999854 444433 55788888888776 333222
Q ss_pred CCccccceeeeecCC-CCccccccccccccCCCcccccccCCcceEEeccCCCccccccCCCchhhhhccccCCCCCCCc
Q 000660 993 QLPPSLKMLYIHNCD-NLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLK 1071 (1367)
Q Consensus 993 ~lp~~L~~L~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~lp~~L~ 1071 (1367)
... +.-.. .|..+..+.|.+.... .. .+...+.|+
T Consensus 327 ---~~~----l~v~~~~l~~ln~s~n~l~~lp-~~------------------------------------~e~~~~~Lq 362 (1081)
T KOG0618|consen 327 ---DNF----LAVLNASLNTLNVSSNKLSTLP-SY------------------------------------EENNHAALQ 362 (1081)
T ss_pred ---hHH----HhhhhHHHHHHhhhhccccccc-cc------------------------------------cchhhHHHH
Confidence 210 11111 1333333333322200 00 011113456
Q ss_pred eeEEccCCchhhHHhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccC
Q 000660 1072 SLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCK 1151 (1367)
Q Consensus 1072 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~ 1151 (1367)
.|.+.++...+.....+.+.++|+.|+|++|++.......+.++..|++|+|++|. +..+|.....++.|++|...+|.
T Consensus 363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred HHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCc
Confidence 66666666666677788899999999999999887555567899999999999996 45678888899999999999998
Q ss_pred CCCcccccCCCCCCCcEEEccCCCCCCCCcCCCCC-CCccEEEecCCc
Q 000660 1152 GLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLP-TNLHSLDIRGNM 1198 (1367)
Q Consensus 1152 ~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~L~~L~L~~n~ 1198 (1367)
+ ..+| .+..++.|+.+|++.|......-....+ ++|++||++||.
T Consensus 442 l-~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 442 L-LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred e-eech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 4 4667 6889999999999999744333222334 899999999995
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.5e-24 Score=237.81 Aligned_cols=98 Identities=24% Similarity=0.284 Sum_probs=86.2
Q ss_pred hHHhhhccCCccceeeecccCCcc-cCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCC
Q 000660 1083 SIAERLDNNTSLEIIRIDFCKNLK-ILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLH 1161 (1367)
Q Consensus 1083 ~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~ 1161 (1367)
.+|..+..++.|+.|.+.+|++.- -+|++++.|.+|+++...+| .++.+|++++.|.+|+.|.|+.|++ -.+|+.+.
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrL-iTLPeaIH 359 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRL-ITLPEAIH 359 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccce-eechhhhh
Confidence 478889999999999999999873 48999999999999999987 5788999999999999999999994 46889999
Q ss_pred CCCCCcEEEccCCCCCCCCcC
Q 000660 1162 NLTSLQELTIGRGVELPSLEE 1182 (1367)
Q Consensus 1162 ~l~~L~~L~l~~n~~~~~~~~ 1182 (1367)
-++.|+.||+..|+.+-.+|.
T Consensus 360 lL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hcCCcceeeccCCcCccCCCC
Confidence 999999999999987665543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=5.8e-25 Score=229.91 Aligned_cols=449 Identities=21% Similarity=0.190 Sum_probs=284.7
Q ss_pred cccccccCCCccceEEcCCCCccccCccccCceecCCCCcchhhHHhhhhcCCCCCCcceeEEcccCCCCCCcccCCCCC
Q 000660 587 SILPKLLKPQRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSF 666 (1367)
Q Consensus 587 ~~~~~~~~l~~Lr~L~L~~~~i~~lP~~i~~L~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~lp~~~~~~~l 666 (1367)
..++.+..+..++.|+.++|.+.++|+.|+.+. .|+.|+++.+...++|+.++. +
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~-----------------------~l~~l~~s~n~~~el~~~i~~--~ 136 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLI-----------------------SLVKLDCSSNELKELPDSIGR--L 136 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhh-----------------------hhhhhhccccceeecCchHHH--H
Confidence 445666688889999999999999999998776 889999999999999999986 8
Q ss_pred CcccEEEEecCCCCCCCCCCCCCCCCCceeecCCCCceeeCccccCCCCCCCccccceecccccccccccccCCCCCCCC
Q 000660 667 SNLVTLKFKNCDMCTALPSVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVE 746 (1367)
Q Consensus 667 ~~L~~L~Ls~~~~~~~lp~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 746 (1367)
..|..|+..+|+.....++++.+.+|..|++.+|. ++..+... .
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~-----------------------------------i 180 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENH-----------------------------------I 180 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHH-----------------------------------H
Confidence 88999998888854444488899999999998875 44333221 1
Q ss_pred CcccccccccccccccccCCCCCCCcccEEEEecccCcccccCCCCCccEEEEcCCCcceeecccCCCCCcccccccccc
Q 000660 747 GFPKLRELHILKCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDAS 826 (1367)
Q Consensus 747 ~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~ 826 (1367)
.++.|++|+...+ +-+.+|+.+..|+ +|..|++..+....
T Consensus 181 ~m~~L~~ld~~~N--~L~tlP~~lg~l~------------------~L~~LyL~~Nki~~-------------------- 220 (565)
T KOG0472|consen 181 AMKRLKHLDCNSN--LLETLPPELGGLE------------------SLELLYLRRNKIRF-------------------- 220 (565)
T ss_pred HHHHHHhcccchh--hhhcCChhhcchh------------------hhHHHHhhhccccc--------------------
Confidence 2556666654332 3335665433332 33333333332111
Q ss_pred ccchhcCCCchhhhhhHHHhhcccccccccccccccccccCCcceEEecCCCCcccchhHHHHHHHhhhhhcccccceEE
Q 000660 827 NQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIE 906 (1367)
Q Consensus 827 ~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~~~~~~L~~L~ 906 (1367)
. +.|.+++.|..++...|.+...+.....+++++..|++.. ++++++|.+.. ...+|++||
T Consensus 221 --------l-Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~c---------lLrsL~rLD 281 (565)
T KOG0472|consen 221 --------L-PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEIC---------LLRSLERLD 281 (565)
T ss_pred --------C-CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHH---------Hhhhhhhhc
Confidence 1 1455566666666777777777777778899999999998 78998887632 235799999
Q ss_pred ecCCCccccCCcccCCCCCccEEEEccCCCccccCC---CCCcccccEEEe-ccCCccccCccccccCCCCCccEEEEec
Q 000660 907 LRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPE---VALPSKLKTIHI-SSCDALKLLPEAWMCDTNSSLEILEILS 982 (1367)
Q Consensus 907 L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~---~~~l~~L~~L~l-~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 982 (1367)
+++|.+. .+|.+++++ +|+.|.+.+|+.-+--.+ -+.-.-|++|.= .-|.-... +.. .. -..-+
T Consensus 282 lSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~-se~---~~---e~~~t--- 349 (565)
T KOG0472|consen 282 LSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ-SEG---GT---ETAMT--- 349 (565)
T ss_pred ccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC-Ccc---cc---cccCC---
Confidence 9999965 577799999 999999999975321111 111111222211 00000000 000 00 00000
Q ss_pred CCCcccccccCCccccceeeeecCCCCccccccccccccCCCcccccc-cCCcceEEeccCCCccccccCCCchhhhhcc
Q 000660 983 CRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYT-SSLLEGLHISECPSLTCIFSKNELPATLESL 1061 (1367)
Q Consensus 983 ~~~l~~~~~~~lp~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l 1061 (1367)
.+.+.+|. .....+.+.|+++.-.++......+... ..-....+++++.
T Consensus 350 ------~~~~~~~~------~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq------------------ 399 (565)
T KOG0472|consen 350 ------LPSESFPD------IYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ------------------ 399 (565)
T ss_pred ------CCCCcccc------hhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch------------------
Confidence 00001111 2222233333333322222111110000 0012222222221
Q ss_pred ccCCCCCCC------ceeEEccCCchhhHHhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCC
Q 000660 1062 EVGNLPPSL------KSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEG 1135 (1367)
Q Consensus 1062 ~~~~lp~~L------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 1135 (1367)
...+|..+ ...-.+.++.++.+|..+..+++|..|++++|.+.. +|..++.+..|++|+++.|. ...+|..
T Consensus 400 -L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~ 476 (565)
T KOG0472|consen 400 -LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNR-FRMLPEC 476 (565)
T ss_pred -HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccc-cccchHH
Confidence 11233322 222334556666778888999999999999877665 88889999999999999994 4567877
Q ss_pred CCCccCcceEEEeccCCCCcccccCCCCCCCcEEEccCCCCCCCCcCCCCCCCccEEEecCCcch
Q 000660 1136 GLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEI 1200 (1367)
Q Consensus 1136 ~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~~~ 1200 (1367)
...+..|+.+-.++|++...-|..+.++.+|..||+.+|.....+|..+++++|+.|+++||++.
T Consensus 477 ~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 77777788888888886666666799999999999999988788888999999999999999643
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=7.8e-24 Score=244.92 Aligned_cols=88 Identities=17% Similarity=0.253 Sum_probs=59.5
Q ss_pred cccccCCCccceEEcCCCCccccCccccCceecCCCCcchhhHHhhhhcCCCCCCcceeEEcccCCCCCCcccCCCCCCc
Q 000660 589 LPKLLKPQRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSN 668 (1367)
Q Consensus 589 ~~~~~~l~~Lr~L~L~~~~i~~lP~~i~~L~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~ 668 (1367)
+..++.-..+..|+++.|.+-..|-.+ .+..-+|+.|+++++....+|..+.. +..
T Consensus 14 p~~i~~~~~~~~ln~~~N~~l~~pl~~----------------------~~~~v~L~~l~lsnn~~~~fp~~it~--l~~ 69 (1081)
T KOG0618|consen 14 PEQILNNEALQILNLRRNSLLSRPLEF----------------------VEKRVKLKSLDLSNNQISSFPIQITL--LSH 69 (1081)
T ss_pred chhhccHHHHHhhhccccccccCchHH----------------------hhheeeeEEeeccccccccCCchhhh--HHH
Confidence 344443344777777777766655221 11223588888888888888887765 778
Q ss_pred ccEEEEecCCCCCCCC-CCCCCCCCCceeecCCC
Q 000660 669 LVTLKFKNCDMCTALP-SVGQLPSLKHLVVCGMS 701 (1367)
Q Consensus 669 L~~L~Ls~~~~~~~lp-~l~~L~~L~~L~l~~~~ 701 (1367)
|+.|+++.|. +..+| +.+++.+|++|.|.+|.
T Consensus 70 L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~ 102 (1081)
T KOG0618|consen 70 LRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNR 102 (1081)
T ss_pred Hhhcccchhh-HhhCchhhhhhhcchhheeccch
Confidence 8888888776 55666 77888888888887663
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=9.2e-21 Score=250.31 Aligned_cols=132 Identities=23% Similarity=0.345 Sum_probs=65.3
Q ss_pred CcceEEEeccCCCCcccccCCCCCCCcEEEccCCCCCCCCcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEE
Q 000660 1141 KLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHF 1220 (1367)
Q Consensus 1141 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L 1220 (1367)
+|+.|++++|...+.+|..++++++|+.|++++|..+..+|....+++|+.|++++|....... ...++|+.|
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p-------~~~~nL~~L 851 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP-------DISTNISDL 851 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc-------ccccccCEe
Confidence 4444444444444444444444444444444444433333333334444444444442211100 012344444
Q ss_pred EecCCCCcCCcCcchhhhhcccCCCCCCCCeEEecCCCCCcccccccccCCCCcEEeecCCCCCcCCC
Q 000660 1221 KISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFP 1288 (1367)
Q Consensus 1221 ~l~~~~~~l~~l~~~~n~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ls~n~~l~~lp 1288 (1367)
+++++ .++.+|. .+..+++|+.|++++|+.+..+|..+..+++|+.|++++|+.+..++
T Consensus 852 ~Ls~n--~i~~iP~-------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 852 NLSRT--GIEEVPW-------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ECCCC--CCccChH-------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 44443 2333332 23346677777777777777777767777777777777777666554
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.6e-23 Score=229.90 Aligned_cols=365 Identities=20% Similarity=0.252 Sum_probs=234.3
Q ss_pred cccccchhcCCCchhhhhhHHHhhcccccccccccccccccccCCcceEEecCCCCcccchhHHHHHHHhhhhhcccccc
Q 000660 824 DASNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLE 903 (1367)
Q Consensus 824 ~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~~~~~~L~ 903 (1367)
|++.+-|..+.+|.....++.++.+.+..+.+...|.. +..+.+|++|.+++ ++|.++..+ ..-.|.|+
T Consensus 13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeE-L~~lqkLEHLs~~H-N~L~~vhGE---------Ls~Lp~LR 81 (1255)
T KOG0444|consen 13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEE-LSRLQKLEHLSMAH-NQLISVHGE---------LSDLPRLR 81 (1255)
T ss_pred cccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHH-HHHHhhhhhhhhhh-hhhHhhhhh---------hccchhhH
Confidence 34444445567777888888887777777776665544 45666677776666 333333221 11235677
Q ss_pred eEEecCCCccc-cCCcccCCCCCccEEEEccCCCccccC-CCCCcccccEEEeccCCccccCccccccCCCCCccEEEEe
Q 000660 904 YIELRDCQDLV-KLPQSSLSLSSLREIEIYQCSSLVSFP-EVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEIL 981 (1367)
Q Consensus 904 ~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 981 (1367)
.+.+.+|++-. -+|..+-.+..|..|+|++|. +...| .+....++-+|++|+|++ ..+|...+ .+++-|-.|+++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lf-inLtDLLfLDLS 158 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLF-INLTDLLFLDLS 158 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCcc-ccCCchHH-HhhHhHhhhccc
Confidence 77777766543 356666677777777777773 44455 466667777777777774 44554332 333334444444
Q ss_pred cCCCcccccccCCccccceeeeecCCCCccccccccccccCCCcccccccCCcceEEeccCCCccccccCCCchhhhhcc
Q 000660 982 SCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLESL 1061 (1367)
Q Consensus 982 ~~~~l~~~~~~~lp~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l 1061 (1367)
++. +. .+|+. +..+.+|++|.+++|-+..
T Consensus 159 ~Nr-Le-----~LPPQ-----~RRL~~LqtL~Ls~NPL~h---------------------------------------- 187 (1255)
T KOG0444|consen 159 NNR-LE-----MLPPQ-----IRRLSMLQTLKLSNNPLNH---------------------------------------- 187 (1255)
T ss_pred cch-hh-----hcCHH-----HHHHhhhhhhhcCCChhhH----------------------------------------
Confidence 331 11 23333 4444445555544443221
Q ss_pred ccCCCCCCCceeEEccCCchhhHHhhhccCCccceeeecccCCc-ccCccccCCCCCccEEEecccCCccccCCCCCCcc
Q 000660 1062 EVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNL-KILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCA 1140 (1367)
Q Consensus 1062 ~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 1140 (1367)
.-...+..+++|++|.+++.+-+ ..+|.++..+.+|..++++.|. +..+|+.+..++
T Consensus 188 ---------------------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~ 245 (1255)
T KOG0444|consen 188 ---------------------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLR 245 (1255)
T ss_pred ---------------------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhh
Confidence 11122335677888888876654 4578888899999999999875 456888888899
Q ss_pred CcceEEEeccCCCCcccccCCCCCCCcEEEccCCCCCCCCcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEE
Q 000660 1141 KLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHF 1220 (1367)
Q Consensus 1141 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L 1220 (1367)
+|+.|+||+|.++. +....+...+|+.|++|.|+....+...+.++.|+.|.+.+|...... .+.++.++.+|+.+
T Consensus 246 ~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeG---iPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEG---IPSGIGKLIQLEVF 321 (1255)
T ss_pred hhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccC---CccchhhhhhhHHH
Confidence 99999999998553 344556677889999999976665566688889999988888544333 34566677777777
Q ss_pred EecCCCCcCCcCcchhhhhcccCCCCCCCCeEEecCCCCCcccccccccCCCCcEEeecCCCCCcCCCC
Q 000660 1221 KISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPE 1289 (1367)
Q Consensus 1221 ~l~~~~~~l~~l~~~~n~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ls~n~~l~~lp~ 1289 (1367)
..++| .++-+|.+ +..+..|+.|.++.| .+..+|..+.-++.|+.||+..||++-.-|.
T Consensus 322 ~aanN--~LElVPEg-------lcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 322 HAANN--KLELVPEG-------LCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred Hhhcc--ccccCchh-------hhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 77765 34444432 334678888888774 4567888888888888888888887766654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=7.9e-14 Score=169.61 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=54.0
Q ss_pred CccceEEcCCCCccccCccccCceecCCCCcchhhHHhhhhcCCCCCCcceeEEcccCCCCCCcccCCCCCCcccEEEEe
Q 000660 596 QRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFK 675 (1367)
Q Consensus 596 ~~Lr~L~L~~~~i~~lP~~i~~L~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~Ls 675 (1367)
..-..|+|+++.++.+|+.+. ++|+.|.+.+|..+.+|.. +++|++|+|+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-------------------------~~L~~L~L~~N~Lt~LP~l-----p~~Lk~LdLs 250 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-------------------------AHITTLVIPDNNLTSLPAL-----PPELRTLEVS 250 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-------------------------cCCCEEEccCCcCCCCCCC-----CCCCcEEEec
Confidence 345678999999888887662 2688888888888888852 5688888888
Q ss_pred cCCCCCCCCCCCCCCCCCceeecCCC
Q 000660 676 NCDMCTALPSVGQLPSLKHLVVCGMS 701 (1367)
Q Consensus 676 ~~~~~~~lp~l~~L~~L~~L~l~~~~ 701 (1367)
+|. +..+|.+ .++|++|++++|.
T Consensus 251 ~N~-LtsLP~l--p~sL~~L~Ls~N~ 273 (788)
T PRK15387 251 GNQ-LTSLPVL--PPGLLELSIFSNP 273 (788)
T ss_pred CCc-cCcccCc--ccccceeeccCCc
Confidence 876 4566643 4677888887764
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=7.5e-14 Score=169.84 Aligned_cols=155 Identities=25% Similarity=0.254 Sum_probs=79.1
Q ss_pred ccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCcEEEcc
Q 000660 1093 SLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIG 1172 (1367)
Q Consensus 1093 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~ 1172 (1367)
+|+.|++++|++.+ +|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+.+ +|.. .++|+.|+++
T Consensus 303 ~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls 370 (788)
T PRK15387 303 GLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAY 370 (788)
T ss_pred ccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhh
Confidence 45555555555554 3321 124555555555443 23321 1355566666655442 3322 2345555555
Q ss_pred CCCCCCCCcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEEEecCCCCcCCcCcchhhhhcccCCCCCCCCeE
Q 000660 1173 RGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALPLLASLTSL 1252 (1367)
Q Consensus 1173 ~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~l~~~~n~l~~~~~~l~~L~~L 1252 (1367)
+|... .+|. .+.+|+.|++++|.+.... . ..++|+.|++++| .+..+| ..+.+|+.|
T Consensus 371 ~N~L~-~LP~--l~~~L~~LdLs~N~Lt~LP-----~---l~s~L~~LdLS~N--~LssIP----------~l~~~L~~L 427 (788)
T PRK15387 371 NNRLT-SLPA--LPSGLKELIVSGNRLTSLP-----V---LPSELKELMVSGN--RLTSLP----------MLPSGLLSL 427 (788)
T ss_pred ccccc-cCcc--cccccceEEecCCcccCCC-----C---cccCCCEEEccCC--cCCCCC----------cchhhhhhh
Confidence 55322 2332 2345666666665322100 0 1234445555444 222222 113467788
Q ss_pred EecCCCCCcccccccccCCCCcEEeecCCCC
Q 000660 1253 EIYNFPNLERLSSSIVDLQNLTSLYLKNCPK 1283 (1367)
Q Consensus 1253 ~l~~~~~l~~l~~~~~~l~~L~~L~ls~n~~ 1283 (1367)
++++|. ++.+|..+.++++|+.|+|++|+.
T Consensus 428 ~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 428 SVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhccCc-ccccChHHhhccCCCeEECCCCCC
Confidence 888854 567888888888888899988864
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=3.4e-16 Score=164.84 Aligned_cols=370 Identities=16% Similarity=0.087 Sum_probs=208.1
Q ss_pred cccceEEecCCCccccCCcccCCCCCccEEEEccCCCccccC--CCCCcccccEEEeccCCccccCccccccCCCCCccE
Q 000660 900 CRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFP--EVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEI 977 (1367)
Q Consensus 900 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 977 (1367)
++|+.|||++|.+...-|..|..+++|..|.+.++..++.+| .|+.+..|+-|.+.-|++.......+ ..+++|..
T Consensus 91 ~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al--~dL~~l~l 168 (498)
T KOG4237|consen 91 HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL--RDLPSLSL 168 (498)
T ss_pred hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH--HHhhhcch
Confidence 345555555666666677788888888888888866777777 37788888888887777554444433 45566666
Q ss_pred EEEecCCCcccccccCCccccceeeeecCCCCccccccccccccCCCcccccccCCcceEE--eccCCCccccccCCCch
Q 000660 978 LEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLH--ISECPSLTCIFSKNELP 1055 (1367)
Q Consensus 978 L~l~~~~~l~~~~~~~lp~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~--l~~~~~l~~~~~~~~~~ 1055 (1367)
|.+.++. ++.++.+. +..+..++.+.+..|.+...- +|..+. +...+..+. ......|
T Consensus 169 LslyDn~-~q~i~~~t---------f~~l~~i~tlhlA~np~icdC---------nL~wla~~~a~~~iets-garc~~p 228 (498)
T KOG4237|consen 169 LSLYDNK-IQSICKGT---------FQGLAAIKTLHLAQNPFICDC---------NLPWLADDLAMNPIETS-GARCVSP 228 (498)
T ss_pred hcccchh-hhhhcccc---------ccchhccchHhhhcCcccccc---------ccchhhhHHhhchhhcc-cceecch
Confidence 6665542 22222211 455566666666555432100 010000 000000000 0000111
Q ss_pred hhhhccccCCCCC-----CCcee---EEccCCchhhHH-hhhccCCccceeeecccCCcccCccccCCCCCccEEEeccc
Q 000660 1056 ATLESLEVGNLPP-----SLKSL---EVLSCSKLESIA-ERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWEC 1126 (1367)
Q Consensus 1056 ~~l~~l~~~~lp~-----~L~~L---~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n 1126 (1367)
..+.+-.++.+++ +++.+ ....|......| ..|..+++|++|++++|+++++-+.+|..+..+++|.|..|
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 1111111111111 11111 111222222233 35889999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCcEEEccCCCCCC-----------------CCcCCCCCCCc
Q 000660 1127 KNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELP-----------------SLEEDGLPTNL 1189 (1367)
Q Consensus 1127 ~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~~~~~~L 1189 (1367)
++...-...+.++..|+.|+|.+|+++...|..|..+.+|..|++-.|+..- ..|....+..+
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~ 388 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFV 388 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchh
Confidence 8765555667789999999999999999999999999999999998776221 12233456677
Q ss_pred cEEEecCCcchhhhhhhhcccCCCCCcccEEEecCCCCc---CCcCcchhhhhcccCC-CC-CCCCeEEecCCCCCcccc
Q 000660 1190 HSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDD---MVSIPLEDKRLGAALP-LL-ASLTSLEIYNFPNLERLS 1264 (1367)
Q Consensus 1190 ~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---l~~l~~~~n~l~~~~~-~l-~~L~~L~l~~~~~l~~l~ 1264 (1367)
+.+.++++.+....... -..+--+.-+.|.+. +.++--..|.....+| .. ..-.+|++.+| .+..+|
T Consensus 389 ~~~~~~dv~~~~~~c~~-------~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn-~~~~vp 460 (498)
T KOG4237|consen 389 RQIPISDVAFGDFRCGG-------PEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGN-AITSVP 460 (498)
T ss_pred ccccchhccccccccCC-------ccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccc-hhcccC
Confidence 88888776322111100 000000111111110 1111111111111222 22 35667777775 456777
Q ss_pred cccccCCCCcEEeecCCCCCcCCCCCCC--ccccceeeccC
Q 000660 1265 SSIVDLQNLTSLYLKNCPKLKYFPEKGL--PSSLLKLSIYD 1303 (1367)
Q Consensus 1265 ~~~~~l~~L~~L~ls~n~~l~~lp~~~~--~~sL~~L~i~~ 1303 (1367)
.. .+.+| .+++++| .+..+....+ +..|.+|-+++
T Consensus 461 ~~--~~~~l-~~dls~n-~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 461 DE--LLRSL-LLDLSNN-RISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred HH--HHhhh-hcccccC-ceehhhcccccchhhhheeEEec
Confidence 64 66777 7888887 4666654333 24555555554
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=1.1e-14 Score=153.73 Aligned_cols=288 Identities=15% Similarity=0.091 Sum_probs=161.3
Q ss_pred CCcceeEEcccCCCCCCcccCCCCCCcccEEEEecCCCCCCCC-CCCCCCCCCceeecCCCCceeeCccccCCCCCCCcc
Q 000660 642 TNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTALP-SVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFP 720 (1367)
Q Consensus 642 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~Ls~~~~~~~lp-~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 720 (1367)
+....+++..|+++.+|+..+ +.+++|+.||||+|.+...-| .|..|++|-.|.+.+++.|+.++.+.++. +.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF-~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-----L~ 140 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAF-KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-----LS 140 (498)
T ss_pred CcceEEEeccCCcccCChhhc-cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-----HH
Confidence 467889999999999998877 469999999999999766667 79999999999999988899988766543 33
Q ss_pred ccceecccccccccccccCCCCCCCCCcccccccccccccccccCCCCCCCcccEEEEecccCcccccCCCCCccEEEEc
Q 000660 721 CLKTLLFENMQEWEDWIPHGSSQGVEGFPKLRELHILKCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLEIG 800 (1367)
Q Consensus 721 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~ 800 (1367)
+|+.|.+.-+.- .... ...+..+++|..|++.++. +. .++. ..+..+..++.+.+.
T Consensus 141 slqrLllNan~i--~Cir---~~al~dL~~l~lLslyDn~-~q-~i~~-----------------~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 141 SLQRLLLNANHI--NCIR---QDALRDLPSLSLLSLYDNK-IQ-SICK-----------------GTFQGLAAIKTLHLA 196 (498)
T ss_pred HHHHHhcChhhh--cchh---HHHHHHhhhcchhcccchh-hh-hhcc-----------------ccccchhccchHhhh
Confidence 444333322110 0000 0111234444444444432 11 1221 123334444444444
Q ss_pred CCCcceeecccCCCCCccccccccccccchhcCCCchhhhhhHHHhhccccccccccccccccc-ccCCcceEEecCCCC
Q 000660 801 GCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQ-DICSLKRLTIGSCPK 879 (1367)
Q Consensus 801 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~ 879 (1367)
.++.... -+++.+... ....+..++..+...-..+....+......-|. .+.++..--.+.|.-
T Consensus 197 ~np~icd-------CnL~wla~~--------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~ 261 (498)
T KOG4237|consen 197 QNPFICD-------CNLPWLADD--------LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP 261 (498)
T ss_pred cCccccc-------cccchhhhH--------HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc
Confidence 3331110 000000000 000011111111111111111222222211111 111111111122211
Q ss_pred cccchhHHHHHHHhhhhhcccccceEEecCCCccccCCcccCCCCCccEEEEccCCCccccC--CCCCcccccEEEeccC
Q 000660 880 LQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFP--EVALPSKLKTIHISSC 957 (1367)
Q Consensus 880 L~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~l~~L~~L~l~~~ 957 (1367)
....+.. -+...++|+.|++++|.+...-+.+|..+..+++|.|..| .+..+. .|.++..|+.|++.+|
T Consensus 262 d~~cP~~--------cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 262 DSICPAK--------CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred CCcChHH--------HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC
Confidence 1111111 1334579999999999999988899999999999999999 445554 3788999999999999
Q ss_pred CccccCccccccCCCCCccEEEEecCCC
Q 000660 958 DALKLLPEAWMCDTNSSLEILEILSCRS 985 (1367)
Q Consensus 958 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 985 (1367)
+++...|..| ..+.+|.+|.+..++-
T Consensus 333 ~it~~~~~aF--~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 333 QITTVAPGAF--QTLFSLSTLNLLSNPF 358 (498)
T ss_pred eeEEEecccc--cccceeeeeehccCcc
Confidence 9888878766 6777888888877653
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.38 E-value=3.1e-11 Score=160.28 Aligned_cols=293 Identities=16% Similarity=0.209 Sum_probs=183.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeC-CccCHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVS-DDFDVKRLTKTI 266 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i 266 (1367)
..+|-|.. |.+.|... ...+++.|+|++|.||||++..+... ++.++|+++. .+.+...+...+
T Consensus 14 ~~~~~R~r----l~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRER----LLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchH----HHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 34566654 44444321 35689999999999999999998852 2258999996 445677787888
Q ss_pred HHHhhhcCCC------------CCCChHHHHHHHHHHhC--CCceEEEEEcCCCCCchhhhhhcccc-CCCCCCcEEEEE
Q 000660 267 LTSIVASQNV------------GDPSLNSLQKELSKQLS--GKKFLLVLDDVWNRNYDDWVQLRRPF-EVGAPGSKIIVT 331 (1367)
Q Consensus 267 l~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l-~~~~~gs~ilvT 331 (1367)
+..+...... ...+...+...+-..+. +.+++||+||+...+......+...+ .....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 8877532211 00122233333333332 67899999999665433333333333 333456788899
Q ss_pred cCchhH---HhhhCCCCceeCC----CCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHH
Q 000660 332 TRNQEV---AEIMGTVPSYQLK----KLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRR 404 (1367)
Q Consensus 332 tR~~~v---~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~ 404 (1367)
||...- ...........+. +|+.+|+.++|...... +...+...+|.+.|+|.|+++..++..+.......
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~--~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~ 236 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS--PIEAAESSRLCDDVEGWATALQLIALSARQNNSSL 236 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC--CCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch
Confidence 998421 1111112244555 99999999999876432 22345678899999999999999987775442210
Q ss_pred HHHHHHhchhhhccc-cccCchHHH-HHhhhCCChhHHHHhhhhccCCCCcccCHHHHHHHHHHcCCccCCCCCCChHHH
Q 000660 405 EWERVLCSKIWELSE-KRCGIIPAL-AVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDL 482 (1367)
Q Consensus 405 ~w~~~l~~~~~~~~~-~~~~i~~~l-~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~ 482 (1367)
. .. .+.+.. ....+...+ .-.++.||++.+..+...|+++ .++.+-+- .+... +.
T Consensus 237 ~--~~----~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~------~l~~~--------~~ 293 (903)
T PRK04841 237 H--DS----ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIV------RVTGE--------EN 293 (903)
T ss_pred h--hh----hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHH------HHcCC--------Cc
Confidence 0 00 111211 112344443 3348899999999999999996 34433221 22111 11
Q ss_pred HHHHHHHHHhcCcccc-ccCCCCceeehHHHHHHHHHhh
Q 000660 483 GRDFFKELRSRSFLQQ-SATDASLFVMHDLINDLARWAA 520 (1367)
Q Consensus 483 ~~~~~~~L~~~~ll~~-~~~~~~~~~mhdlv~~~a~~~~ 520 (1367)
+.+.+++|.+++++.. .+++..+|+.|++++++.+...
T Consensus 294 ~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 294 GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 4677999999999754 3444468999999999998664
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=4.2e-12 Score=156.17 Aligned_cols=94 Identities=19% Similarity=0.296 Sum_probs=49.1
Q ss_pred CcceEEecCCCCcccchhHHHHHHHhhhhhcccccceEEecCCCccccCCcccCCCCCccEEEEccCCCccccCCCCCcc
Q 000660 868 SLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPS 947 (1367)
Q Consensus 868 ~L~~L~L~~~~~L~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~ 947 (1367)
+...|++++. +++.++.. .++.|+.|++++|.+. .+|..+. ++|+.|++++|. +..+|. ..++
T Consensus 179 ~~~~L~L~~~-~LtsLP~~-----------Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~-LtsLP~-~l~~ 241 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPAC-----------IPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQ-LTSIPA-TLPD 241 (754)
T ss_pred CceEEEeCCC-CcCcCCcc-----------cccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCc-cccCCh-hhhc
Confidence 4556666653 45544321 2246677777776544 4454332 466777776663 344553 2234
Q ss_pred cccEEEeccCCccccCccccccCCCCCccEEEEecC
Q 000660 948 KLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSC 983 (1367)
Q Consensus 948 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 983 (1367)
+|+.|++++|.+. .+|..+ ..+|+.|+++++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l----~s~L~~L~Ls~N 272 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERL----PSALQSLDLFHN 272 (754)
T ss_pred cccEEECcCCccC-cCChhH----hCCCCEEECcCC
Confidence 6666666666643 444332 134555555433
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=7.6e-12 Score=153.95 Aligned_cols=94 Identities=21% Similarity=0.333 Sum_probs=44.7
Q ss_pred CcceEEecCCCCcccchhHHHHHHHhhhhhcccccceEEecCCCccccCCcccCCCCCccEEEEccCCCccccCCCCCcc
Q 000660 868 SLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPS 947 (1367)
Q Consensus 868 ~L~~L~L~~~~~L~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~ 947 (1367)
+|+.|++++ ++++.++.. .+++|++|++++|.+. .+|..+. ++|+.|+|++|.. ..+|. ..++
T Consensus 200 ~L~~L~Ls~-N~LtsLP~~-----------l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L-~~LP~-~l~s 262 (754)
T PRK15370 200 QITTLILDN-NELKSLPEN-----------LQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRI-TELPE-RLPS 262 (754)
T ss_pred CCcEEEecC-CCCCcCChh-----------hccCCCEEECCCCccc-cCChhhh--ccccEEECcCCcc-CcCCh-hHhC
Confidence 455666655 345544321 1235666666665543 3443332 3566666666532 24442 1234
Q ss_pred cccEEEeccCCccccCccccccCCCCCccEEEEecC
Q 000660 948 KLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSC 983 (1367)
Q Consensus 948 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 983 (1367)
+|+.|++++|.+. .+|..+ ..+|+.|++++|
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l----~~sL~~L~Ls~N 293 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENL----PEELRYLSVYDN 293 (754)
T ss_pred CCCEEECcCCccC-cccccc----CCCCcEEECCCC
Confidence 5666666655543 344322 134555555444
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.24 E-value=1.1e-09 Score=129.53 Aligned_cols=297 Identities=14% Similarity=0.109 Sum_probs=175.9
Q ss_pred ccCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 000660 186 DEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKT 265 (1367)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (1367)
.+..++||++|+++|...+...- .+.....+.|+|++|+|||++++.++++.......-..+++++....+...++.+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 34579999999999999985431 1223456789999999999999999985432222234677777777788899999
Q ss_pred HHHHhhhc-CCCCCCChHHHHHHHHHHhC--CCceEEEEEcCCCCC----chhhhhhccccCCCCCCcE--EEEEcCchh
Q 000660 266 ILTSIVAS-QNVGDPSLNSLQKELSKQLS--GKKFLLVLDDVWNRN----YDDWVQLRRPFEVGAPGSK--IIVTTRNQE 336 (1367)
Q Consensus 266 il~~l~~~-~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--ilvTtR~~~ 336 (1367)
++.++... ......+.+++...+.+.++ +++.+||+|+++.-. .+.+..+...+.. ..+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 99998752 22123456667777777765 456899999996532 1223333322221 22333 566665543
Q ss_pred HHhhhC-------CCCceeCCCCChHHHHHHHHhhhcC-------CcchHHHHHHHHHHhcCCChHHHHHHHhhh--c--
Q 000660 337 VAEIMG-------TVPSYQLKKLSDNDCLAVFAQHSLG-------SHKLLEEIGKKIVTKCDGLPLAAQTLGGLL--R-- 398 (1367)
Q Consensus 337 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~-------~~~~~~~~~~~i~~~~~g~PLai~~~~~~l--~-- 398 (1367)
+..... ....+.+++++.++..+++..++.. .+..++.+++..+...|..+.|+..+-.+. .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332211 1246789999999999999876521 112233333333333566777777764322 1
Q ss_pred -CC--CCHHHHHHHHhchhhhccccccCchHHHHHhhhCCChhHHHHhhhhccC-CC-CcccCHHHHHHH--HHHcCCcc
Q 000660 399 -GK--HDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLF-PK-DYEFEEEEIILL--WCASGFLD 471 (1367)
Q Consensus 399 -~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~f-p~-~~~i~~~~li~~--w~a~g~~~ 471 (1367)
+. -+.+....+.+.. -.....-.+..||.+.|..+..++.. .. ...+...++... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 1345555544332 11234556889999988877655532 21 134556665533 22222110
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCccccc
Q 000660 472 HKEDENPSEDLGRDFFKELRSRSFLQQS 499 (1367)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 499 (1367)
.........+|+.+|...|+++..
T Consensus 335 ----~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 ----EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred ----CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 011123356688999999998753
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=9.3e-13 Score=151.96 Aligned_cols=194 Identities=19% Similarity=0.115 Sum_probs=88.7
Q ss_pred HHhhhccCCccceeeecccCCcccCccccCCCCC---ccEEEecccCCcc----ccCCCCCCc-cCcceEEEeccCCCC-
Q 000660 1084 IAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQ---LQEIEIWECKNLV----SFPEGGLPC-AKLIKFNISWCKGLE- 1154 (1367)
Q Consensus 1084 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~---L~~L~L~~n~~~~----~~p~~~~~l-~~L~~L~ls~n~~~~- 1154 (1367)
++..+..+++|+.|++++|.+....+..+..+.+ |++|++++|.+.. .+...+..+ ++|+.|++++|.+.+
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 4444555666666666666665434433333333 6666666665442 111222333 566666666666552
Q ss_pred ---cccccCCCCCCCcEEEccCCCCCCC----C-cCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEEEecCCC
Q 000660 1155 ---ALPKGLHNLTSLQELTIGRGVELPS----L-EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECD 1226 (1367)
Q Consensus 1155 ---~~p~~~~~l~~L~~L~l~~n~~~~~----~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 1226 (1367)
.++..+..+++|++|++++|..... + ......++|+.|++++|.+...........+..+++|+.|++++|.
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 2233444555666666666643211 0 1112234666666666643322222222333445555555555541
Q ss_pred CcCCcCcchhhhhcccC-CCCCCCCeEEecCCCCC----cccccccccCCCCcEEeecCC
Q 000660 1227 DDMVSIPLEDKRLGAAL-PLLASLTSLEIYNFPNL----ERLSSSIVDLQNLTSLYLKNC 1281 (1367)
Q Consensus 1227 ~~l~~l~~~~n~l~~~~-~~l~~L~~L~l~~~~~l----~~l~~~~~~l~~L~~L~ls~n 1281 (1367)
+..... ..+...+ ...+.|++|++++|... ..+...+..+++|+.+++++|
T Consensus 233 --l~~~~~--~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 233 --LTDAGA--AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred --CchHHH--HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 111000 0000011 12355666666665432 122333344456666666666
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=5.3e-13 Score=124.13 Aligned_cols=161 Identities=22% Similarity=0.339 Sum_probs=120.0
Q ss_pred hccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCc
Q 000660 1088 LDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQ 1167 (1367)
Q Consensus 1088 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~ 1167 (1367)
+.++.+.+.|.+++|+++. +|..+..+.+|+.|++++|++ +.+|..+..+++|+.|+++-|+ +..+|.+|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 4567788899999999987 677899999999999998864 5688889999999999999998 668899999999999
Q ss_pred EEEccCCCCCCC-CcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEEEecCCCCcCCcCcchhhhhcccCCCC
Q 000660 1168 ELTIGRGVELPS-LEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALPLL 1246 (1367)
Q Consensus 1168 ~L~l~~n~~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~l~~~~n~l~~~~~~l 1246 (1367)
.||+.+|..... +|. | |..++.|+.|+++++ ..+.+|. .+..+
T Consensus 106 vldltynnl~e~~lpg--------------n-------------ff~m~tlralyl~dn--dfe~lp~-------dvg~l 149 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPG--------------N-------------FFYMTTLRALYLGDN--DFEILPP-------DVGKL 149 (264)
T ss_pred hhhccccccccccCCc--------------c-------------hhHHHHHHHHHhcCC--CcccCCh-------hhhhh
Confidence 999999853322 221 1 223344444444443 2222322 34457
Q ss_pred CCCCeEEecCCCCCcccccccccCCCCcEEeecCCCCCcCCCC
Q 000660 1247 ASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPE 1289 (1367)
Q Consensus 1247 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ls~n~~l~~lp~ 1289 (1367)
++|+.|.+.+| .+-++|..++.++.|+.|.+.+| .++.+|.
T Consensus 150 t~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 150 TNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred cceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence 78888888885 45678888888999999999988 5777765
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.11 E-value=1.8e-08 Score=118.08 Aligned_cols=297 Identities=13% Similarity=0.099 Sum_probs=171.4
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccc-ccc---ceEEEEEeCCccCHHHH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-DHF---DLKAWTCVSDDFDVKRL 262 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~s~~~~~~~~ 262 (1367)
+..++||++|+++|..++...- .+.....+.|+|++|+|||++++.+++...-. ... -..+|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 3469999999999999986421 12234578999999999999999999743111 111 24578888877788889
Q ss_pred HHHHHHHhhh---cCCCCCCChHHHHHHHHHHhC--CCceEEEEEcCCCCC---chhhhhhcccc-CCCC--CCcEEEEE
Q 000660 263 TKTILTSIVA---SQNVGDPSLNSLQKELSKQLS--GKKFLLVLDDVWNRN---YDDWVQLRRPF-EVGA--PGSKIIVT 331 (1367)
Q Consensus 263 ~~~il~~l~~---~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~ilvT 331 (1367)
+..|++++.. .......+..+....+.+.+. +++++||||+++.-. .+....+.... .... ....+|++
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 9999999842 211122344555555655553 567899999996541 11122222221 1111 22344555
Q ss_pred cCchhHHhhh----C---CCCceeCCCCChHHHHHHHHhhhc---CC---cchHHHHHHHHHHhcCCChHHH-HHHHhhh
Q 000660 332 TRNQEVAEIM----G---TVPSYQLKKLSDNDCLAVFAQHSL---GS---HKLLEEIGKKIVTKCDGLPLAA-QTLGGLL 397 (1367)
Q Consensus 332 tR~~~v~~~~----~---~~~~~~l~~L~~~~~~~lf~~~~~---~~---~~~~~~~~~~i~~~~~g~PLai-~~~~~~l 397 (1367)
+........+ . ....+.+++.+.++..+++..++- .. .++..+....++....|.|-.+ .++-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5443322111 1 124688999999999999988763 11 1223334455667777887443 3322211
Q ss_pred ----c-CC--CCHHHHHHHHhchhhhccccccCchHHHHHhhhCCChhHHHHhhhhccC--CCCcccCHHHHHHHHH--H
Q 000660 398 ----R-GK--HDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLF--PKDYEFEEEEIILLWC--A 466 (1367)
Q Consensus 398 ----~-~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~f--p~~~~i~~~~li~~w~--a 466 (1367)
. +. -+.+..+.+.+.. -.....-+...||.+.|..+..++.. .++..+...++...+- +
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 11 1234433333221 01233456778999888766655422 1344566676666331 2
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhcCccccc
Q 000660 467 SGFLDHKEDENPSEDLGRDFFKELRSRSFLQQS 499 (1367)
Q Consensus 467 ~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 499 (1367)
+.+ . -.........+++..|...|+++..
T Consensus 322 ~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 EDI-G---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred Hhc-C---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 211 1 1122345677889999999999874
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=1.7e-11 Score=141.44 Aligned_cols=221 Identities=18% Similarity=0.137 Sum_probs=148.6
Q ss_pred hhHHhhhccCCccceeeecccCCcc------cCccccCCCCCccEEEecccCCccccCCCCCCc---cCcceEEEeccCC
Q 000660 1082 ESIAERLDNNTSLEIIRIDFCKNLK------ILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPC---AKLIKFNISWCKG 1152 (1367)
Q Consensus 1082 ~~~~~~~~~l~~L~~L~l~~n~~~~------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l---~~L~~L~ls~n~~ 1152 (1367)
..++..+...++|+.|+++++.+.+ .++..+..+++|+.|++++|.+....+..+..+ ++|++|++++|.+
T Consensus 41 ~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 41 KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 3466777888899999999987762 234567778999999999998875444433333 4499999999997
Q ss_pred CC----cccccCCCC-CCCcEEEccCCCCCCC-----CcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEEEe
Q 000660 1153 LE----ALPKGLHNL-TSLQELTIGRGVELPS-----LEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKI 1222 (1367)
Q Consensus 1153 ~~----~~p~~~~~l-~~L~~L~l~~n~~~~~-----~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l 1222 (1367)
.. .+...+..+ ++|+.|++++|..... ...+..+++|+.|++++|.............+..+++|+.|++
T Consensus 121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L 200 (319)
T cd00116 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200 (319)
T ss_pred chHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEec
Confidence 63 233445666 8999999999975421 1123456789999999997664333333333445679999999
Q ss_pred cCCCCcCCcCcchhhhhcccCCCCCCCCeEEecCCCCCccccccc-----ccCCCCcEEeecCCCCCcC-----CCC-CC
Q 000660 1223 SECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSI-----VDLQNLTSLYLKNCPKLKY-----FPE-KG 1291 (1367)
Q Consensus 1223 ~~~~~~l~~l~~~~n~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~-----~~l~~L~~L~ls~n~~l~~-----lp~-~~ 1291 (1367)
++|. +... ....+...++.+++|+.|++++|+....-...+ ...+.|++|++++|. ++. +.. -.
T Consensus 201 ~~n~--i~~~--~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~ 275 (319)
T cd00116 201 NNNG--LTDE--GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLA 275 (319)
T ss_pred cCCc--cChH--HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHh
Confidence 9873 2211 122344456678999999999986543111111 134799999999994 431 111 01
Q ss_pred CccccceeeccCChhh
Q 000660 1292 LPSSLLKLSIYDCPLI 1307 (1367)
Q Consensus 1292 ~~~sL~~L~i~~c~~l 1307 (1367)
..++|+.+++++|+.-
T Consensus 276 ~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 276 EKESLLELDLRGNKFG 291 (319)
T ss_pred cCCCccEEECCCCCCc
Confidence 1378999999999643
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.10 E-value=3e-12 Score=119.18 Aligned_cols=89 Identities=27% Similarity=0.301 Sum_probs=35.6
Q ss_pred CccccCCCCCccEEEecccCCc-cccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCcEEEccCCCCCCCCcCCCCC
Q 000660 1108 LPSGLHNLRQLQEIEIWECKNL-VSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLP 1186 (1367)
Q Consensus 1108 ~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 1186 (1367)
+|.+|+.++.|+.|+|.+|++. ..+|..+..+..|+.|++++|. ...+|..++++++|+.|.+.+|..+..+.+.+.+
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~l 172 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDL 172 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHH
Confidence 3444444444444444444332 2234444444444444444444 2233333444444444444444333333333333
Q ss_pred CCccEEEecCC
Q 000660 1187 TNLHSLDIRGN 1197 (1367)
Q Consensus 1187 ~~L~~L~L~~n 1197 (1367)
..|++|.+.+|
T Consensus 173 t~lrelhiqgn 183 (264)
T KOG0617|consen 173 TRLRELHIQGN 183 (264)
T ss_pred HHHHHHhcccc
Confidence 33333333333
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.04 E-value=1.3e-08 Score=113.75 Aligned_cols=177 Identities=21% Similarity=0.208 Sum_probs=114.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHH----H
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELS----K 290 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~----~ 290 (1367)
..++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..++++.|+..++.... ..+.......+. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHH
Confidence 4588999999999999999999854322 11 22343 33345777888888888765432 222222233333 3
Q ss_pred H-hCCCceEEEEEcCCCCCchhhhhhccccC---CCCCCcEEEEEcCchhHHhhhC----------CCCceeCCCCChHH
Q 000660 291 Q-LSGKKFLLVLDDVWNRNYDDWVQLRRPFE---VGAPGSKIIVTTRNQEVAEIMG----------TVPSYQLKKLSDND 356 (1367)
Q Consensus 291 ~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~~ 356 (1367)
. ..+++.++|+||+|......++.+..... .......|++|.... ....+. ....+.+++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 36788999999998876566666543221 112233455555432 221111 13467899999999
Q ss_pred HHHHHHhhhcC-----CcchHHHHHHHHHHhcCCChHHHHHHHhhh
Q 000660 357 CLAVFAQHSLG-----SHKLLEEIGKKIVTKCDGLPLAAQTLGGLL 397 (1367)
Q Consensus 357 ~~~lf~~~~~~-----~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 397 (1367)
..+++...+.. ...-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99998876532 112345788999999999999999998766
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.99 E-value=2.9e-09 Score=121.46 Aligned_cols=277 Identities=16% Similarity=0.164 Sum_probs=153.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+|+|++..++.+..++..... .......+.|+|++|+||||+|+.+++.... .+ .++..+ .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMGV--NI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhCC--Ce---EEEecc-cccChHHHHHHH
Confidence 4699999999999888754211 1234567889999999999999999985322 21 112211 111122233333
Q ss_pred HHhhhcCCCCCCCh----HHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHHhhhC-
Q 000660 268 TSIVASQNVGDPSL----NSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMG- 342 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 342 (1367)
..+....-.-.+++ ....+.+...+.+.+..+|+|+..+.. .+...+ .+.+-|..|+|...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHHHH
Confidence 33321110000111 112333444455555666666653321 111111 12455667777554433221
Q ss_pred -CCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhchhhhccc-
Q 000660 343 -TVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSE- 419 (1367)
Q Consensus 343 -~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~- 419 (1367)
-...+.+++++.++..+++.+.+.. ...-..+.+..|++.|+|.|-.+..+...+ ..|....... ....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~--~I~~~ 241 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG--VITKE 241 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC--CCCHH
Confidence 1246899999999999999987654 223345678899999999996555554432 1222211100 0000
Q ss_pred cccCchHHHHHhhhCCChhHHHHhh-hhccCCCCcccCHHHHHHHHHHcCCccCCCCCCChHHHHHHHHH-HHHhcCccc
Q 000660 420 KRCGIIPALAVSYYYLPPTLKQCFA-YCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFK-ELRSRSFLQ 497 (1367)
Q Consensus 420 ~~~~i~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~-~L~~~~ll~ 497 (1367)
.-......+...|..|++..+..+. ....|+.+ .+..+.+.... . .+. +.+++.++ .|++.+|++
T Consensus 242 ~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g--~~~----~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 242 IADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G--EER----DTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C--CCc----chHHHHhhHHHHHcCCcc
Confidence 0012234456677888888888775 77778765 46666654332 1 122 23444566 899999997
Q ss_pred ccc
Q 000660 498 QSA 500 (1367)
Q Consensus 498 ~~~ 500 (1367)
...
T Consensus 309 ~~~ 311 (328)
T PRK00080 309 RTP 311 (328)
T ss_pred cCC
Confidence 543
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.97 E-value=9.2e-08 Score=113.10 Aligned_cols=291 Identities=20% Similarity=0.240 Sum_probs=189.4
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-cCHHHHHHHHHHHhhhcCCC
Q 000660 198 KDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVKRLTKTILTSIVASQNV 276 (1367)
Q Consensus 198 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~ 276 (1367)
.++++.|... ...+.+.|..++|.|||||+-+.+.. .. .=..+.|.++... .+..++...++..+..-.+.
T Consensus 25 ~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~--~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL--AA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh--cC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 4566666433 36899999999999999999999751 11 1235899998764 57888999999988754331
Q ss_pred ------------CCCChHHHHHHHHHHhC--CCceEEEEEcCCCCCchhh-hhhccccCCCCCCcEEEEEcCchhH---H
Q 000660 277 ------------GDPSLNSLQKELSKQLS--GKKFLLVLDDVWNRNYDDW-VQLRRPFEVGAPGSKIIVTTRNQEV---A 338 (1367)
Q Consensus 277 ------------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~-~~l~~~l~~~~~gs~ilvTtR~~~v---~ 338 (1367)
...+...+.+.+...+. .++..+||||..-...... ..+...+.....+-.+|||||+..- +
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 22344455555555444 4689999999854432222 2333334455678899999998642 2
Q ss_pred hhhCCCCceeC----CCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhchh
Q 000660 339 EIMGTVPSYQL----KKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKI 414 (1367)
Q Consensus 339 ~~~~~~~~~~l----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~ 414 (1367)
+.--....+++ =.++.+|+-++|.... ..+-.+.-.+.+.+..+|-+-|+..++=.++.+.+.+.-...+
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~--~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L---- 250 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRG--SLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL---- 250 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcC--CCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc----
Confidence 21111122222 3578999999998775 2333455678899999999999999998888443433322222
Q ss_pred hhccccccCch-HHHHHhhhCCChhHHHHhhhhccCCCCcccCHHHHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhc
Q 000660 415 WELSEKRCGII-PALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSR 493 (1367)
Q Consensus 415 ~~~~~~~~~i~-~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~ 493 (1367)
++....+. -...--++.||+++|..+.-||+++.= -++|+..- . + ++-|...+++|.++
T Consensus 251 ---sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-----t----g----~~ng~amLe~L~~~ 310 (894)
T COG2909 251 ---SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-----T----G----EENGQAMLEELERR 310 (894)
T ss_pred ---cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-----h----c----CCcHHHHHHHHHhC
Confidence 11111111 123445789999999999999998541 22333221 1 1 12366789999999
Q ss_pred Ccccc-ccCCCCceeehHHHHHHHHHhhcc
Q 000660 494 SFLQQ-SATDASLFVMHDLINDLARWAAGE 522 (1367)
Q Consensus 494 ~ll~~-~~~~~~~~~mhdlv~~~a~~~~~~ 522 (1367)
+++-. -++...+|+.|.+..||-+.....
T Consensus 311 gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 311 GLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 99754 456677999999999998865543
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.96 E-value=4e-09 Score=119.87 Aligned_cols=276 Identities=15% Similarity=0.123 Sum_probs=152.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+|||++..++++..++..... .......+.++|++|+|||+||+.+++... ..+ ..+..+...... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCch-hHHHHH
Confidence 3689999999999988864211 123355688999999999999999998432 222 112211111111 222223
Q ss_pred HHhhhcCCCCCCCh----HHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHHhhhC-
Q 000660 268 TSIVASQNVGDPSL----NSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMG- 342 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 342 (1367)
..+....-.-.+++ ....+.+...+.+.+..+|+|+.... ..| ...+ .+.+-|.+|||...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---eecC---CCeEEEEecCCccccCHHHHh
Confidence 33321110000111 12334455555666666777766443 112 1122 22456667787754433221
Q ss_pred -CCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhchhhhccc-
Q 000660 343 -TVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSE- 419 (1367)
Q Consensus 343 -~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~- 419 (1367)
-...+.+++++.++..+++.+.+.. ...-..+....|++.|+|.|-.+..++..+ |.............
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~~ 220 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINRD 220 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCHH
Confidence 1246789999999999999987753 222335677889999999997665555432 11100000000000
Q ss_pred cccCchHHHHHhhhCCChhHHHHhh-hhccCCCCcccCHHHHHHHHHHcCCccCCCCCCChHHHHHHHHH-HHHhcCccc
Q 000660 420 KRCGIIPALAVSYYYLPPTLKQCFA-YCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFK-ELRSRSFLQ 497 (1367)
Q Consensus 420 ~~~~i~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~-~L~~~~ll~ 497 (1367)
.-..+...+...|..++++.+..+. .++.++.+ .+..+++.... |- ....++..++ .|++++|++
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHHcCCcc
Confidence 0011222255668888888887666 66777543 45555544332 11 1234566678 699999997
Q ss_pred cc
Q 000660 498 QS 499 (1367)
Q Consensus 498 ~~ 499 (1367)
..
T Consensus 288 ~~ 289 (305)
T TIGR00635 288 RT 289 (305)
T ss_pred cC
Confidence 54
No 32
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.94 E-value=2.7e-09 Score=116.89 Aligned_cols=194 Identities=21% Similarity=0.222 Sum_probs=99.1
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH---
Q 000660 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTI--- 266 (1367)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i--- 266 (1367)
|+||++|+++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+...- ..+ ..+|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~-~~~-~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKE-KGY-KVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhh-cCC-cEEEEecccchhh-hHHHHHHHH
Confidence 689999999999998653 2478899999999999999999984311 112 3344444333322 222222
Q ss_pred -------HHHhhhcCCC---------CCCChHHHHHHHHHHh--CCCceEEEEEcCCCCC------chhhhhhccccCC-
Q 000660 267 -------LTSIVASQNV---------GDPSLNSLQKELSKQL--SGKKFLLVLDDVWNRN------YDDWVQLRRPFEV- 321 (1367)
Q Consensus 267 -------l~~l~~~~~~---------~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~------~~~~~~l~~~l~~- 321 (1367)
.+.+...... ...........+.+.+ .+++++||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 1222211110 0011112222222222 2456999999995432 0111122222222
Q ss_pred -CCCCcEEEEEcCchhHHhh--------hCCCCceeCCCCChHHHHHHHHhhhcCCc--chHHHHHHHHHHhcCCChHHH
Q 000660 322 -GAPGSKIIVTTRNQEVAEI--------MGTVPSYQLKKLSDNDCLAVFAQHSLGSH--KLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 322 -~~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~i~~~~~g~PLai 390 (1367)
....-.+|++.-...+... .+....+.+++|+.+++++++...+-... +.-.+..++|...+||+|..|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHH
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHH
Confidence 1233334444444433322 12334599999999999999998643321 123556689999999999988
Q ss_pred HH
Q 000660 391 QT 392 (1367)
Q Consensus 391 ~~ 392 (1367)
..
T Consensus 232 ~~ 233 (234)
T PF01637_consen 232 QE 233 (234)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 33
>PF05729 NACHT: NACHT domain
Probab=98.86 E-value=1.1e-08 Score=104.97 Aligned_cols=143 Identities=21% Similarity=0.269 Sum_probs=87.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccc----cceEEEEEeCCccCHH---HHHHHHHHHhhhcCCCCCCChHHHHHHH
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDH----FDLKAWTCVSDDFDVK---RLTKTILTSIVASQNVGDPSLNSLQKEL 288 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~l 288 (1367)
|++.|+|.+|+||||+++.++.+...... +...+|++.+...... .+...|..+.... ..........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~- 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEELLQE- 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHHHHHH-
Confidence 57899999999999999999875332222 4566677766544332 2333333332211 1111111111
Q ss_pred HHHhCCCceEEEEEcCCCCCch-------hhhhhccccCC--CCCCcEEEEEcCchhH---HhhhCCCCceeCCCCChHH
Q 000660 289 SKQLSGKKFLLVLDDVWNRNYD-------DWVQLRRPFEV--GAPGSKIIVTTRNQEV---AEIMGTVPSYQLKKLSDND 356 (1367)
Q Consensus 289 ~~~l~~k~~LlVlDdv~~~~~~-------~~~~l~~~l~~--~~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~L~~~~ 356 (1367)
..-+.++++||+|++++.... .+..+...+.. ..++.+++||+|.... .........+++.+|++++
T Consensus 76 -~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 76 -LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred -HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 122578999999999654321 12222222222 2568999999999765 3334455689999999999
Q ss_pred HHHHHHhh
Q 000660 357 CLAVFAQH 364 (1367)
Q Consensus 357 ~~~lf~~~ 364 (1367)
..+++.++
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99998765
No 34
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.85 E-value=3.1e-07 Score=109.33 Aligned_cols=210 Identities=14% Similarity=0.085 Sum_probs=126.2
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccc---cccc--ceEEEEEeCCccCHHH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV---QDHF--DLKAWTCVSDDFDVKR 261 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F--~~~~wv~~s~~~~~~~ 261 (1367)
+..+.||++|+++|...|...-. +.+...++.|+|++|+|||+.++.|.+...- +... -.+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 35689999999999998865321 2233467889999999999999999864311 1111 2367888877778888
Q ss_pred HHHHHHHHhhhcCCCCCCChHHHHHHHHHHhC---CCceEEEEEcCCCCCchhhhhhccccC-CCCCCcEEEE--EcCch
Q 000660 262 LTKTILTSIVASQNVGDPSLNSLQKELSKQLS---GKKFLLVLDDVWNRNYDDWVQLRRPFE-VGAPGSKIIV--TTRNQ 335 (1367)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilv--TtR~~ 335 (1367)
++..|.+++....+............+...+. +...+||||++..-....-+.|...+. ....+++|+| ++...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999988855443233333444444544442 234589999995432111112222221 1124556554 33321
Q ss_pred h--------HHhhhCCCCceeCCCCChHHHHHHHHhhhcC-----CcchHHHHHHHHHHhcCCChHHHHHHHhhhc
Q 000660 336 E--------VAEIMGTVPSYQLKKLSDNDCLAVFAQHSLG-----SHKLLEEIGKKIVTKCDGLPLAAQTLGGLLR 398 (1367)
Q Consensus 336 ~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-----~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~ 398 (1367)
+ +...++ ...+..++.+.++-.+++..++-. .+..++-+|+.++...|-.-.||.++-.+..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 1 112222 234667999999999999888753 2233444555555555666677766655543
No 35
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.70 E-value=2.8e-07 Score=116.60 Aligned_cols=311 Identities=17% Similarity=0.246 Sum_probs=180.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccc-ccccceEEEEEeCCcc---CHHHHHH
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-QDHFDLKAWTCVSDDF---DVKRLTK 264 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~---~~~~~~~ 264 (1367)
.++||+.|++.|.+.+... ..+...++.+.|..|||||+|+++|.....- ++.|-...+-....+. ...+.++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v---~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 1 PLYGRETELAQLLAAFDRV---SKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCCchHhHHHHHHHHHHHH---hCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHH
Confidence 3789999999999998754 3456679999999999999999999863211 1222111111111111 1223444
Q ss_pred HHHHHhhhcCC-------------------C------------C---------CCChH-----HHHHHHHHHh-CCCceE
Q 000660 265 TILTSIVASQN-------------------V------------G---------DPSLN-----SLQKELSKQL-SGKKFL 298 (1367)
Q Consensus 265 ~il~~l~~~~~-------------------~------------~---------~~~~~-----~~~~~l~~~l-~~k~~L 298 (1367)
+++.++..... . . ....+ ..+..+.... +.|+.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 44443311100 0 0 00001 1222233333 356999
Q ss_pred EEEEcCCCCCchhhhhhccccCCCC----CCcEEEE--EcCch--hHHhhhCCCCceeCCCCChHHHHHHHHhhhcCCcc
Q 000660 299 LVLDDVWNRNYDDWVQLRRPFEVGA----PGSKIIV--TTRNQ--EVAEIMGTVPSYQLKKLSDNDCLAVFAQHSLGSHK 370 (1367)
Q Consensus 299 lVlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilv--TtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 370 (1367)
+|+||+...+....+-+........ .-..|.. |.+.. .+.........+.|.||+..+...+..........
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~ 237 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL 237 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc
Confidence 9999995443333322221111111 1123333 33332 11222234478999999999999999887655455
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHhhhcCC------CCHHHHHHHHhchhhhccccccCchHHHHHhhhCCChhHHHHhh
Q 000660 371 LLEEIGKKIVTKCDGLPLAAQTLGGLLRGK------HDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFA 444 (1367)
Q Consensus 371 ~~~~~~~~i~~~~~g~PLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~ 444 (1367)
...+....|+++.+|+|+.+..+-..+... .+...|..=..+ ....... +.+...+..-.+.||...|..+.
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHHHHHHHHhcCCHHHHHHHH
Confidence 667889999999999999999998887653 233344321110 1111111 22445688889999999999999
Q ss_pred hhccCCCCcccCHHHHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhcCcccccc-----CCCCc--e-eehHHHHHHH
Q 000660 445 YCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSRSFLQQSA-----TDASL--F-VMHDLINDLA 516 (1367)
Q Consensus 445 ~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-----~~~~~--~-~mhdlv~~~a 516 (1367)
..|++- -.|+.+.|...|- +..++++....+.|....++..++ ..... | ..||.+++.|
T Consensus 316 ~AA~iG--~~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaa 382 (849)
T COG3899 316 AAACIG--NRFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAA 382 (849)
T ss_pred HHHHhC--ccCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHH
Confidence 999994 5567777666552 134566777777777666664321 11111 2 4688888877
Q ss_pred H
Q 000660 517 R 517 (1367)
Q Consensus 517 ~ 517 (1367)
-
T Consensus 383 Y 383 (849)
T COG3899 383 Y 383 (849)
T ss_pred h
Confidence 5
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7.1e-09 Score=112.26 Aligned_cols=116 Identities=21% Similarity=0.096 Sum_probs=72.4
Q ss_pred HHhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCcccc-CCCCCCccCcceEEEeccCCCCc-cccc--
Q 000660 1084 IAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSF-PEGGLPCAKLIKFNISWCKGLEA-LPKG-- 1159 (1367)
Q Consensus 1084 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~ls~n~~~~~-~p~~-- 1159 (1367)
+-..+..+|+|+.|++..|............+..|++|+|++|++...- -...+.++.|+.|+++.|.+... .|+.
T Consensus 214 V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s 293 (505)
T KOG3207|consen 214 VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES 293 (505)
T ss_pred HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc
Confidence 3344566778888888888644333333445667888888888765422 13345677888888888776442 2332
Q ss_pred ---CCCCCCCcEEEccCCCC--CCCCcCCCCCCCccEEEecCCcc
Q 000660 1160 ---LHNLTSLQELTIGRGVE--LPSLEEDGLPTNLHSLDIRGNME 1199 (1367)
Q Consensus 1160 ---~~~l~~L~~L~l~~n~~--~~~~~~~~~~~~L~~L~L~~n~~ 1199 (1367)
...+++|++|+++.|+. -..+.....+++|+.|.+..|.+
T Consensus 294 ~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 294 LDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 35577888888888864 33344445566777777666643
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.59 E-value=2.6e-07 Score=98.98 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=95.0
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
.+.+.++|++|+|||+||+++++.. ......+.|+.+... ..... .+.+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~---~~~~~----------------------~~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKS---QYFSP----------------------AVLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHh---hhhhH----------------------HHHhhcc-
Confidence 3578999999999999999999853 222234566665311 00000 1111122
Q ss_pred CceEEEEEcCCCCC-chhhhh-hccccCCC-CCCcEEEE-EcCc---------hhHHhhhCCCCceeCCCCChHHHHHHH
Q 000660 295 KKFLLVLDDVWNRN-YDDWVQ-LRRPFEVG-APGSKIIV-TTRN---------QEVAEIMGTVPSYQLKKLSDNDCLAVF 361 (1367)
Q Consensus 295 k~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ilv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf 361 (1367)
+.-+||+||+|... ...|+. +...+... ..|..+|| |++. +.+...+.....++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23499999998743 245653 32223221 23556655 4443 355666666678999999999999999
Q ss_pred HhhhcC-CcchHHHHHHHHHHhcCCChHHHHHHHh
Q 000660 362 AQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTLGG 395 (1367)
Q Consensus 362 ~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~~ 395 (1367)
++.++. .-.--+++..-|++.+.|-.-++..+-.
T Consensus 171 ~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 171 QRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 988864 2333456777888888877666554443
No 38
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.58 E-value=1.1e-06 Score=103.28 Aligned_cols=173 Identities=20% Similarity=0.262 Sum_probs=104.9
Q ss_pred cccccchhHHH---HHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 000660 189 KVYGRETEKKD---VVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKT 265 (1367)
Q Consensus 189 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (1367)
++||++..+.. +.+++... ....+.++|++|+||||+|+.+++.. ...| +.++.......-.++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHHHH
Confidence 47888776555 77766432 34567889999999999999998742 2222 222221111111122
Q ss_pred HHHHhhhcCCCCCCChHHHHHHHHHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEE--EcCchh--HH-h
Q 000660 266 ILTSIVASQNVGDPSLNSLQKELSKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIV--TTRNQE--VA-E 339 (1367)
Q Consensus 266 il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v~-~ 339 (1367)
+++. .... ..+++.+|++|+++.-.....+.+...+.. |..++| ||.+.. +. .
T Consensus 80 ii~~------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 80 VIEE------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHH------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 2221 1111 145788999999987765566666555432 444544 344432 11 1
Q ss_pred hhCCCCceeCCCCChHHHHHHHHhhhcC---Cc-chHHHHHHHHHHhcCCChHHHHHHHh
Q 000660 340 IMGTVPSYQLKKLSDNDCLAVFAQHSLG---SH-KLLEEIGKKIVTKCDGLPLAAQTLGG 395 (1367)
Q Consensus 340 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~---~~-~~~~~~~~~i~~~~~g~PLai~~~~~ 395 (1367)
.......+.+.+++.++.+.++.+.+.. .. ....+....|++.|+|.+..+..+..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1223367899999999999999876432 11 23356678899999999877655443
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.2e-08 Score=110.50 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=58.4
Q ss_pred hhhccCCccceeeecccCCcccCccc-cCCCCCccEEEecccCCcc-ccCCCCCCccCcceEEEeccCCCCcccccCCCC
Q 000660 1086 ERLDNNTSLEIIRIDFCKNLKILPSG-LHNLRQLQEIEIWECKNLV-SFPEGGLPCAKLIKFNISWCKGLEALPKGLHNL 1163 (1367)
Q Consensus 1086 ~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l 1163 (1367)
.....+++|+.|+|+.|++..-..+. -..+++|+.|.|++|.+.. .+......+|+|+.|++..|.....-......+
T Consensus 166 ~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~ 245 (505)
T KOG3207|consen 166 KIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL 245 (505)
T ss_pred HHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh
Confidence 34455667777777777665322211 1235667777777776542 122223345666666666664332222233345
Q ss_pred CCCcEEEccCCCCCCCC--cCCCCCCCccEEEecCC
Q 000660 1164 TSLQELTIGRGVELPSL--EEDGLPTNLHSLDIRGN 1197 (1367)
Q Consensus 1164 ~~L~~L~l~~n~~~~~~--~~~~~~~~L~~L~L~~n 1197 (1367)
..|+.|+|++|+.+... +..+.++.|+.|+++.|
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 56666666666543322 33455555555555555
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.50 E-value=1.1e-06 Score=95.44 Aligned_cols=166 Identities=23% Similarity=0.301 Sum_probs=100.7
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTI 266 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (1367)
...++|.+..+.++++ . +.+.-..+||++|+||||||+.+... ....| ..+|...+-.+-++++
T Consensus 29 Q~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHHH
Confidence 4455665555555443 2 34566779999999999999999973 33344 2333332222222333
Q ss_pred HHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEE--EcCchhH---Hhhh
Q 000660 267 LTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIV--TTRNQEV---AEIM 341 (1367)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v---~~~~ 341 (1367)
+++.. +....+++.+|.+|.|..-+..+.+.+. |.-..|.-|+| ||-++.. ....
T Consensus 93 ~e~a~-----------------~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 93 IEEAR-----------------KNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred HHHHH-----------------HHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHh
Confidence 33221 1223489999999999776555555544 33356777776 6666532 1222
Q ss_pred CCCCceeCCCCChHHHHHHHHhhhcC-------Ccc-hHHHHHHHHHHhcCCChH
Q 000660 342 GTVPSYQLKKLSDNDCLAVFAQHSLG-------SHK-LLEEIGKKIVTKCDGLPL 388 (1367)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~~~~~-------~~~-~~~~~~~~i~~~~~g~PL 388 (1367)
+-..++.+++|+.++-.+++.+.+.. ... -.+++..-++..++|=--
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 44578999999999999999884322 111 124466678888877443
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.47 E-value=6e-08 Score=96.80 Aligned_cols=129 Identities=22% Similarity=0.201 Sum_probs=46.8
Q ss_pred hccCCccceeeecccCCcccCccccC-CCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccC-CCCCC
Q 000660 1088 LDNNTSLEIIRIDFCKNLKILPSGLH-NLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGL-HNLTS 1165 (1367)
Q Consensus 1088 ~~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~-~~l~~ 1165 (1367)
+.++.+++.|+|.+|.+..+ +.++ .+.+|+.|++++|.+.. + +++..++.|+.|++++|.+... .+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 44566889999999998863 3455 58899999999997764 3 3567789999999999997654 3334 46899
Q ss_pred CcEEEccCCCC--CCCCcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEEEe
Q 000660 1166 LQELTIGRGVE--LPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKI 1222 (1367)
Q Consensus 1166 L~~L~l~~n~~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l 1222 (1367)
|+.|++++|.. ...+.....+++|+.|++.+|+....... ....+..+|+|+.|+-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y-R~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY-RLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH-HHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH-HHHHHHHcChhheeCC
Confidence 99999999963 33344456789999999999975432110 1112334555555543
No 42
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=6.3e-06 Score=93.46 Aligned_cols=179 Identities=18% Similarity=0.255 Sum_probs=118.0
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCc----ccccccceEEEEEe-CCccCHHHHH
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK----QVQDHFDLKAWTCV-SDDFDVKRLT 263 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~-s~~~~~~~~~ 263 (1367)
+++|.+..++.+.+++..+. -.....++|+.|+||||+|+.++... ....|.|...|... +....+++ .
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 57898888999999986542 24677899999999999999998632 23456676666542 22223333 2
Q ss_pred HHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHH-hh-h
Q 000660 264 KTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVA-EI-M 341 (1367)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~~-~ 341 (1367)
+++.+.+.... ..+++=++|+|++...+...|..+...+.....++.+|++|.+.+.. .. .
T Consensus 79 r~~~~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 79 RNIIEEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22333222111 12455577888886666678889988888777888888888664321 11 1
Q ss_pred CCCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 342 GTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
.-...+++.++++++....+.+...+. ..+.+..++..++|.|..+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 234678999999999988776543221 1344677899999998766543
No 43
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=1.3e-05 Score=95.93 Aligned_cols=180 Identities=13% Similarity=0.169 Sum_probs=113.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccc-------------------cceE
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH-------------------FDLK 248 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 248 (1367)
.++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+....... |...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 458999999999999986542 2456679999999999999988763221111 1112
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCC
Q 000660 249 AWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAP 324 (1367)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 324 (1367)
++++.+.. ...+++.+.+... ..++.-++|||++...+...|..++..+.....
T Consensus 91 iEIDAas~----------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~ 148 (830)
T PRK07003 91 VEMDAASN----------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPP 148 (830)
T ss_pred EEeccccc----------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCC
Confidence 22222111 1222222222221 124455899999988776778888777766556
Q ss_pred CcEEEEEcCch-hHHhh-hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCCh-HHHHHHH
Q 000660 325 GSKIIVTTRNQ-EVAEI-MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLP-LAAQTLG 394 (1367)
Q Consensus 325 gs~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 394 (1367)
..++|+||.+. .+... .+-...+.++.++.++..+.+.+.+.. ......+....|++.++|.. -|+..+-
T Consensus 149 ~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred CeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77877777764 33221 123467999999999999988876533 22234567788999998855 4555433
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.42 E-value=2.7e-06 Score=86.38 Aligned_cols=181 Identities=22% Similarity=0.252 Sum_probs=95.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+|||.+.-++.+.-++..... .+....-+.+||++|+||||||+.+++. ....|. +.+... .
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~---i-------- 86 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA---I-------- 86 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh---h--------
Confidence 4699998888776555432111 2235677889999999999999999984 333342 222211 0
Q ss_pred HHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCC-------------------CCCcEE
Q 000660 268 TSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVG-------------------APGSKI 328 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-------------------~~gs~i 328 (1367)
....++...+.. + +++-+|.+|.+..-+...-+.+..++.++ .+-+-|
T Consensus 87 -----------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 87 -----------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred -----------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 011112222211 1 23446666777554433333332222111 122345
Q ss_pred EEEcCchhHHhhhCCC--CceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHHHhhhc
Q 000660 329 IVTTRNQEVAEIMGTV--PSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTLGGLLR 398 (1367)
Q Consensus 329 lvTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~ 398 (1367)
=.|||...+...+... -..+++..+.+|-.++..+.+.. .-+-.++.+.+|++++.|-|--+.-+-+..+
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 6688886554434332 23579999999999999877654 3445678899999999999987665555444
No 45
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=2e-06 Score=93.06 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=99.0
Q ss_pred cchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhh
Q 000660 193 RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVA 272 (1367)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 272 (1367)
.+..++.+.+++.. .....+.|+|++|+|||+||+.+++... ......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHH------hH------
Confidence 34566677776532 2356888999999999999999997432 2233445665432211 00
Q ss_pred cCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCch-hh-hhhccccCC-CCCCcEEEEEcCchh---------HHhh
Q 000660 273 SQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYD-DW-VQLRRPFEV-GAPGSKIIVTTRNQE---------VAEI 340 (1367)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~ 340 (1367)
. .+...+++ .-+||+||++..... .| +.+...+.. ...+.+||+||+... +...
T Consensus 82 ---------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 0 01111222 238999999654322 23 334333322 123457888887532 2222
Q ss_pred hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHHHh
Q 000660 341 MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTLGG 395 (1367)
Q Consensus 341 ~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~~ 395 (1367)
+.....+++.++++++...++...+-. ..+--.+..+.|++.+.|.|..+..+..
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 323457899999999999988765432 2223345667777788888877766643
No 46
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=7.4e-06 Score=94.54 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=109.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|.+.-++.+...+..+. -...+.++|+.|+||||+|+.++.......... ...+..-...+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 358999999999998886532 245678999999999999999986422111000 00000000001110
Q ss_pred HHhhhc----CCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hhHH
Q 000660 268 TSIVAS----QNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QEVA 338 (1367)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 338 (1367)
...... ........+++.+.+... ..+++-++|+|++...+...++.+...+.......++|++|.+ ..+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 000000 000001122222111110 1234569999999777656677777777655556677776654 3333
Q ss_pred hhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHH
Q 000660 339 EIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQ 391 (1367)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~ 391 (1367)
..+ +-...+++.+++.++..+.+...+.. ...-..+.+..|++.++|.|-.+.
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 222 23367899999999998888775533 222334667789999999876443
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=2.4e-08 Score=105.36 Aligned_cols=194 Identities=16% Similarity=0.159 Sum_probs=131.3
Q ss_pred HHhhhccCCccceeeecccCCcccCccc----cCCCCCccEEEecccCCccc-------------cCCCCCCccCcceEE
Q 000660 1084 IAERLDNNTSLEIIRIDFCKNLKILPSG----LHNLRQLQEIEIWECKNLVS-------------FPEGGLPCAKLIKFN 1146 (1367)
Q Consensus 1084 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~-------------~p~~~~~l~~L~~L~ 1146 (1367)
+...+..++.|++||||+|-+....+.. +.++++|++|.|.+|.+-.. .......-++|+.+.
T Consensus 84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 3456778889999999999987544433 45688999999999965311 011223457899999
Q ss_pred EeccCCCCc----ccccCCCCCCCcEEEccCCCCCCCC-----cCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcc
Q 000660 1147 ISWCKGLEA----LPKGLHNLTSLQELTIGRGVELPSL-----EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSL 1217 (1367)
Q Consensus 1147 ls~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L 1217 (1367)
..+|++-.. +...|...+.|+.+.+..|..-+.- ..+..+++|+.|||.+|.+...........+..+++|
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 999985322 2335667789999999988632211 2235789999999999988877777777778888899
Q ss_pred cEEEecCCCCcCCcCcc--hhhhhcccCCCCCCCCeEEecCCCCCc----ccccccccCCCCcEEeecCCC
Q 000660 1218 RHFKISECDDDMVSIPL--EDKRLGAALPLLASLTSLEIYNFPNLE----RLSSSIVDLQNLTSLYLKNCP 1282 (1367)
Q Consensus 1218 ~~L~l~~~~~~l~~l~~--~~n~l~~~~~~l~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~ls~n~ 1282 (1367)
+.+++++|. +..=.. -.+.+. ...|+|+.|.+.+|.... .+...+...|.|..|+|++|.
T Consensus 244 ~El~l~dcl--l~~~Ga~a~~~al~---~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 244 RELNLGDCL--LENEGAIAFVDALK---ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eeecccccc--cccccHHHHHHHHh---ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 999999882 211000 001111 136788888888876533 233344567888888888884
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.39 E-value=1.1e-07 Score=119.67 Aligned_cols=229 Identities=24% Similarity=0.287 Sum_probs=154.2
Q ss_pred CCCceeEEccCCc-hhhHH-hhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceE
Q 000660 1068 PSLKSLEVLSCSK-LESIA-ERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKF 1145 (1367)
Q Consensus 1068 ~~L~~L~l~~~~~-~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 1145 (1367)
+.++.|-+..+.. +..++ ..|..++.|++||+++|.-.+.+|..+++|-+|++|++++..+. .+|.++.++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 3677887777763 44444 34778999999999999988899999999999999999998654 789999999999999
Q ss_pred EEeccCCCCcccccCCCCCCCcEEEccCCCC---CCCCcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccE---
Q 000660 1146 NISWCKGLEALPKGLHNLTSLQELTIGRGVE---LPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRH--- 1219 (1367)
Q Consensus 1146 ~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~---~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~--- 1219 (1367)
++..+.....+|.....+++|++|.+-.-.. ...+.....+.+|+.+....... ... ..+...+.|..
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~---~~~---e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV---LLL---EDLLGMTRLRSLLQ 697 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh---HhH---hhhhhhHHHHHHhH
Confidence 9999988888877777799999998865431 11123335566777776654421 000 01112222222
Q ss_pred -EEecCCCCcCCcCcchhhhhcccCCCCCCCCeEEecCCCCCccccccc-----cc-CCCCcEEeecCCCCCcCCCCCCC
Q 000660 1220 -FKISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSI-----VD-LQNLTSLYLKNCPKLKYFPEKGL 1292 (1367)
Q Consensus 1220 -L~l~~~~~~l~~l~~~~n~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~-----~~-l~~L~~L~ls~n~~l~~lp~~~~ 1292 (1367)
+.+.++ ... .....++.+.+|+.|.+.+|.......... .. +++|..+.+.+|..++.+....+
T Consensus 698 ~l~~~~~--~~~-------~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f 768 (889)
T KOG4658|consen 698 SLSIEGC--SKR-------TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF 768 (889)
T ss_pred hhhhccc--ccc-------eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc
Confidence 221111 111 112245568899999999987754322111 12 55677777888877777766667
Q ss_pred ccccceeeccCChhhHHHHh
Q 000660 1293 PSSLLKLSIYDCPLIEEKCR 1312 (1367)
Q Consensus 1293 ~~sL~~L~i~~c~~l~~~~~ 1312 (1367)
+++|+.|++.+|+.+++...
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cCcccEEEEecccccccCCC
Confidence 88999999998876655443
No 49
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=6.1e-06 Score=97.55 Aligned_cols=193 Identities=13% Similarity=0.158 Sum_probs=111.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...... |+.. ..+..=...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 458999999999999996542 246778999999999999999876321110 1100 0000000111110
Q ss_pred HHhhhc----CCCCCCChHHHHHHHHH----HhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCch-hHH
Q 000660 268 TSIVAS----QNVGDPSLNSLQKELSK----QLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQ-EVA 338 (1367)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~ 338 (1367)
..-... ........+++.+.+.. -..+++-++|+|++..-+...+..+...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 000000 00001122322222211 123566699999998766666777776666555566777766553 332
Q ss_pred -hhhCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHH
Q 000660 339 -EIMGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQT 392 (1367)
Q Consensus 339 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~ 392 (1367)
........+++++++.++....+.+.+-. ......+....|++.++|.+-.+..
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 11233467999999999998888776543 2233456677899999987754443
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.37 E-value=1.2e-08 Score=110.02 Aligned_cols=89 Identities=21% Similarity=0.320 Sum_probs=48.3
Q ss_pred CCCCCeEEecCCCCCccc-----ccccccCCCCcEEeecCCCCCcCCCCCC--CccccceeeccCChhhHHHHhhcCCCC
Q 000660 1246 LASLTSLEIYNFPNLERL-----SSSIVDLQNLTSLYLKNCPKLKYFPEKG--LPSSLLKLSIYDCPLIEEKCREDGGQY 1318 (1367)
Q Consensus 1246 l~~L~~L~l~~~~~l~~l-----~~~~~~l~~L~~L~ls~n~~l~~lp~~~--~~~sL~~L~i~~c~~l~~~~~~~~~~~ 1318 (1367)
++.|+.|.+++|..++.. ...-.++..|..+.+++||.+..--.+. .-++|+.+++.+|....+.-..
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~----- 445 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS----- 445 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH-----
Confidence 455555555555433322 2222456667777777777554332211 2367777888888655443222
Q ss_pred cccccCCCeEEECCeEEeCCCC
Q 000660 1319 WALLTHLPYVEIASKWVFDDDS 1340 (1367)
Q Consensus 1319 ~~~i~~i~~v~~~~~~~~~~~~ 1340 (1367)
+...|.|.+++...+-..+++
T Consensus 446 -~~~~~lp~i~v~a~~a~~t~p 466 (483)
T KOG4341|consen 446 -RFATHLPNIKVHAYFAPVTPP 466 (483)
T ss_pred -HHHhhCccceehhhccCCCCc
Confidence 334578888876554444333
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=7.5e-06 Score=99.94 Aligned_cols=182 Identities=15% Similarity=0.173 Sum_probs=113.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccc-------------------cceE
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH-------------------FDLK 248 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 248 (1367)
.++||.+.-++.|.+++..+. -...+.++|+.|+||||+|+.+++....... |...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 358999999999999886542 1345679999999999999999874321111 1111
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHH-HhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcE
Q 000660 249 AWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSK-QLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSK 327 (1367)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (1367)
+++.......+ ..+.++.+.+.. ...+++-++|+|++...+...++.|+..+.......+
T Consensus 91 iEidAas~~kV-------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 91 IEVDAASRTKV-------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEeccccccCH-------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 22211111111 111222222221 1246677999999988777778888777765555666
Q ss_pred EEEEcCc-hhHHhh-hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 328 IIVTTRN-QEVAEI-MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 328 ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
+|++|.+ ..+... ......|++++++.++..+.+.+.+-. ......+....|++.++|.|--+..+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6665544 444322 223467999999999999888875532 22233467788999999988544433
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=4.6e-07 Score=112.11 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=77.9
Q ss_pred ccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCcEEEcc
Q 000660 1093 SLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIG 1172 (1367)
Q Consensus 1093 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~ 1172 (1367)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36777888888887788778888888888888887777788777778888888888888888888888888888888888
Q ss_pred CCCCCCCCcCC--CCCCCccEEEecCC
Q 000660 1173 RGVELPSLEED--GLPTNLHSLDIRGN 1197 (1367)
Q Consensus 1173 ~n~~~~~~~~~--~~~~~L~~L~L~~n 1197 (1367)
+|.....+|.. ..+.++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 87665555432 12234556666666
No 53
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=4.6e-07 Score=112.07 Aligned_cols=110 Identities=14% Similarity=0.062 Sum_probs=97.4
Q ss_pred CceeEEccCCchhhHHhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEec
Q 000660 1070 LKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISW 1149 (1367)
Q Consensus 1070 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~ 1149 (1367)
+..|++.++.....+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56667777666667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccCCCC-CCCcEEEccCCCCCCC
Q 000660 1150 CKGLEALPKGLHNL-TSLQELTIGRGVELPS 1179 (1367)
Q Consensus 1150 n~~~~~~p~~~~~l-~~L~~L~l~~n~~~~~ 1179 (1367)
|.+.+.+|..+..+ .++..+++.+|..+..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccC
Confidence 99999999988753 5678899998865443
No 54
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.36 E-value=7.7e-07 Score=86.85 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=79.8
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccc---cccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQ---DHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQ 291 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 291 (1367)
.+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...|+.+++.... ...+.+.+.+.+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHHH
Confidence 4789999999999999999998742110 002346799998888999999999999987765 345667777888887
Q ss_pred hCCCc-eEEEEEcCCCC-CchhhhhhccccCCCCCCcEEEEEcCc
Q 000660 292 LSGKK-FLLVLDDVWNR-NYDDWVQLRRPFEVGAPGSKIIVTTRN 334 (1367)
Q Consensus 292 l~~k~-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 334 (1367)
+...+ .+||+|++..- +...++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77555 49999999654 4344444543332 556677776665
No 55
>PRK04195 replication factor C large subunit; Provisional
Probab=98.36 E-value=2.2e-05 Score=94.45 Aligned_cols=246 Identities=15% Similarity=0.132 Sum_probs=138.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|+++.++.+.+|+..... +...+.+.|+|++|+||||+|+.++++.. |+ .+-++.++..+. .....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHHH
Confidence 4589999999999999875321 12267899999999999999999998532 32 233344443222 2223333
Q ss_pred HHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCc----hhhhhhccccCCCCCCcEEEEEcCch-hHHh-hh
Q 000660 268 TSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNY----DDWVQLRRPFEVGAPGSKIIVTTRNQ-EVAE-IM 341 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~ 341 (1367)
........ ....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+. .... .+
T Consensus 86 ~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 22211110 0113677999999965432 234445444432 234466666432 1211 11
Q ss_pred -CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHHHhhhcCC-C--CHHHHHHHHhchhhh
Q 000660 342 -GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGK-H--DRREWERVLCSKIWE 416 (1367)
Q Consensus 342 -~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~-~--~~~~w~~~l~~~~~~ 416 (1367)
.....+.+.+++.++....+.+.+.. ......++...|++.++|-.-.+......+... . +.+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~----- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR----- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-----
Confidence 23457889999999988888776543 222235678889999998766554433333322 1 2333322221
Q ss_pred ccccccCchHHHHHhhh-CCChhHHHHhhhhccCCCCcccCHHHHHHHHHHcCCccC
Q 000660 417 LSEKRCGIIPALAVSYY-YLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDH 472 (1367)
Q Consensus 417 ~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~~~~ 472 (1367)
.+....++.++..-+. .-+......+..+ .++.+ .+-.|+.+.+...
T Consensus 224 -~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~~-~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -RDREESIFDALDAVFKARNADQALEASYDV-------DEDPD-DLIEWIDENIPKE 271 (482)
T ss_pred -CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCHH-HHHHHHHhccccc
Confidence 1223456666665554 3333333333222 23333 4678999999754
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.36 E-value=1.6e-08 Score=109.01 Aligned_cols=117 Identities=18% Similarity=0.284 Sum_probs=58.5
Q ss_pred cccCCcceEEecCCCCcccchhHHHHHHHhhhhhcccccceEEecCCCcccc--CCcccCCCCCccEEEEccCCCcccc-
Q 000660 864 QDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVK--LPQSSLSLSSLREIEIYQCSSLVSF- 940 (1367)
Q Consensus 864 ~~l~~L~~L~L~~~~~L~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~l~~~- 940 (1367)
..++.|++|++..|..++..... .+...+++|++|+++.|..... +..-...+..++.+.+.+|...+.-
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk-------~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~ 259 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLK-------YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA 259 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHH-------HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH
Confidence 34566777777777777655433 2233456777777777764332 1112334555666666666433210
Q ss_pred -C-CCCCcccccEEEeccCCccccCccccccCCCCCccEEEEecCCCcc
Q 000660 941 -P-EVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLT 987 (1367)
Q Consensus 941 -~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 987 (1367)
- .-....-+..+++.+|..+...........+..|+.|...+|..+.
T Consensus 260 l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 260 LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT 308 (483)
T ss_pred HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc
Confidence 0 0122334555555566544433222222344556666666665443
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=2e-07 Score=95.55 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=47.0
Q ss_pred hhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCC
Q 000660 1087 RLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSL 1166 (1367)
Q Consensus 1087 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L 1166 (1367)
+..-.|.++.|++++|.+... ..+..+++|+.|+|++|.+. .+...-..+.+.+.|.+++|.+- .+ .+++.+-+|
T Consensus 302 SvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSL 376 (490)
T KOG1259|consen 302 SVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSL 376 (490)
T ss_pred hhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhh
Confidence 333445555555555555531 12445555555555555332 22222223445555555555421 11 234444555
Q ss_pred cEEEccCCCC--CCCCcCCCCCCCccEEEecCC
Q 000660 1167 QELTIGRGVE--LPSLEEDGLPTNLHSLDIRGN 1197 (1367)
Q Consensus 1167 ~~L~l~~n~~--~~~~~~~~~~~~L~~L~L~~n 1197 (1367)
..||+++|+. +..+...+.+|-|+.+.|.+|
T Consensus 377 vnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 377 VNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred eeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 5555555531 222233344444444444444
No 58
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.35 E-value=2.7e-08 Score=111.13 Aligned_cols=114 Identities=22% Similarity=0.263 Sum_probs=83.1
Q ss_pred chhhHHhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCccccc
Q 000660 1080 KLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKG 1159 (1367)
Q Consensus 1080 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~ 1159 (1367)
.+.++|..+..+..|+.+.+..|.+.. +|..+.++..|..|+|+.|++. .+|..++.| -|+.|-+++|+ ++.+|+.
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNk-l~~lp~~ 161 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNK-LTSLPEE 161 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCc-cccCCcc
Confidence 344667777777778888887777664 6777888888888888887644 456666655 47888888777 5567777
Q ss_pred CCCCCCCcEEEccCCCCCCCCcCCCCCCCccEEEecCC
Q 000660 1160 LHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGN 1197 (1367)
Q Consensus 1160 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n 1197 (1367)
++.++.|..|+.+.|.....++..+.+.+|+.|.+..|
T Consensus 162 ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh
Confidence 77778888888888876666666677777777777776
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.35 E-value=6.2e-06 Score=95.62 Aligned_cols=198 Identities=15% Similarity=0.148 Sum_probs=108.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccc-eEEEEEeCCccCH-HHHHH-
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDV-KRLTK- 264 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~-~~~~~- 264 (1367)
.+++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++... ...+. ..+.+++++-.+. .....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 45889999999999988543 234578999999999999999987432 11121 1234444321100 00000
Q ss_pred --HHHHHhhhcCCCCCCChHHHHHHHHHHh-----CCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCch-h
Q 000660 265 --TILTSIVASQNVGDPSLNSLQKELSKQL-----SGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQ-E 336 (1367)
Q Consensus 265 --~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~ 336 (1367)
......+..........+.....++..- ...+-+||+||+..-....+..+...+......+++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 0000000000000011222222222211 1344589999996554344455555554444556787777543 2
Q ss_pred HHhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHH
Q 000660 337 VAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQT 392 (1367)
Q Consensus 337 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~ 392 (1367)
+...+ .....+++.+++.++...++.+.+.. ...-..+....+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 22222 22356888999999998888876543 2223456778888899887655543
No 60
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.7e-06 Score=102.66 Aligned_cols=194 Identities=18% Similarity=0.192 Sum_probs=113.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|.+.-++.|..++.... -...+.++|++|+||||+|+.+++.....+.+....|.|.+... +.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 358999988888988886542 23567899999999999999998753222222222333221100 000000000
Q ss_pred HHhhhcCCCCCCChHH---HHHHHHH-HhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcC-chhHHhhh-
Q 000660 268 TSIVASQNVGDPSLNS---LQKELSK-QLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTR-NQEVAEIM- 341 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~~~---~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~~- 341 (1367)
..+... .....+. +...+.. -..+++-++|+|+++..+...+..+...+........+|++|. ...+...+
T Consensus 88 ~el~~~---~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 88 LEIDAA---SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred EEeccc---ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 000000 1112222 2222221 1234566999999987766678888777766555555555554 33333222
Q ss_pred CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHH
Q 000660 342 GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai 390 (1367)
.....+++.+++.++....+.+.+-. ......+....|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 23467999999999999999887643 22334567788999999988544
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.2e-05 Score=94.98 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=112.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.++||.+.-++.|.+++..+. -...+.++|..|+||||+|+.+.+.......-.... + .+..+..-...+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHH
Confidence 468999999999999996543 245678999999999999999876321100000000 0 000000000111111
Q ss_pred HH-----hhhcCCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEE-EEcCchhH
Q 000660 268 TS-----IVASQNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKII-VTTRNQEV 337 (1367)
Q Consensus 268 ~~-----l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~~v 337 (1367)
.. +..... .....+++.+.+... ..++.-++|+|++...+...++.++..+..-..+.++| +||....+
T Consensus 89 aG~hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 89 AGRFVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred cCCCCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 00 000000 112233333322221 13556699999998877777888877776544555554 45554544
Q ss_pred Hhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 338 AEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 338 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
...+ +-...+.++.++.++..+.+.+.+.. ......+..+.|++.++|.|..+..+
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4322 23467999999999999888866532 22223455678999999988755444
No 62
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.5e-05 Score=94.57 Aligned_cols=184 Identities=18% Similarity=0.152 Sum_probs=111.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccc-------------------cccceE
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-------------------DHFDLK 248 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 248 (1367)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++..... ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 358999999999999886532 23567799999999999999998632110 012222
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcE
Q 000660 249 AWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSK 327 (1367)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (1367)
+++.......++ +...+.+.+... ..+++-++|+|++..-+...++.+...+......++
T Consensus 91 ieidaas~~gvd-------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTGVE-------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccCHH-------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 222221111111 112222222211 235667999999977766677788877776555665
Q ss_pred EE-EEcCchhHHhh-hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCCh-HHHHHHHh
Q 000660 328 II-VTTRNQEVAEI-MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLP-LAAQTLGG 395 (1367)
Q Consensus 328 il-vTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 395 (1367)
+| +||....+... ......+++++++.++....+.+.+-. ......+....|++.++|-+ -|+..+-.
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55 45544444322 233468999999999988777764422 22334456677888888855 45444433
No 63
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.27 E-value=8.3e-06 Score=99.97 Aligned_cols=172 Identities=20% Similarity=0.229 Sum_probs=106.3
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccc---eEEEEEeCCc---cCHHHH
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD---LKAWTCVSDD---FDVKRL 262 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~s~~---~~~~~~ 262 (1367)
+++|++..++.+.+.+... ....+.|+|++|+||||+|+.+++.......+. ..-|+.+... .+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred hceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 5889999999888877432 245689999999999999999987543322221 2234444321 122222
Q ss_pred HHHH---------------HHHhhhcCC---------------CCCCCh-HHHHHHHHHHhCCCceEEEEEcCCCCCchh
Q 000660 263 TKTI---------------LTSIVASQN---------------VGDPSL-NSLQKELSKQLSGKKFLLVLDDVWNRNYDD 311 (1367)
Q Consensus 263 ~~~i---------------l~~l~~~~~---------------~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 311 (1367)
...+ +...+.... .+...+ ...+..+.+.++++++.++-|+.|..+...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 1111 111111000 011111 245778888899999999988888776677
Q ss_pred hhhhccccCCCCCCcEEEE--EcCchhH-Hhhh-CCCCceeCCCCChHHHHHHHHhhhc
Q 000660 312 WVQLRRPFEVGAPGSKIIV--TTRNQEV-AEIM-GTVPSYQLKKLSDNDCLAVFAQHSL 366 (1367)
Q Consensus 312 ~~~l~~~l~~~~~gs~ilv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~ 366 (1367)
|+.+...+....+...|++ ||++... ...+ .....+.+.+++.+|.+.++.+.+-
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 8888777766666555665 6665431 1111 1224678899999999999987653
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.26 E-value=1.4e-07 Score=99.79 Aligned_cols=230 Identities=15% Similarity=0.106 Sum_probs=102.8
Q ss_pred CCceeEEccCCchh----hHHhhhccCCccceeeecccCCcc----cCc-------cccCCCCCccEEEecccCCccccC
Q 000660 1069 SLKSLEVLSCSKLE----SIAERLDNNTSLEIIRIDFCKNLK----ILP-------SGLHNLRQLQEIEIWECKNLVSFP 1133 (1367)
Q Consensus 1069 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~----~~p-------~~~~~l~~L~~L~L~~n~~~~~~p 1133 (1367)
++++++++++..-. .+...+.+.++|+..++++- ++| .+| ..+..++.|++|+||+|-+-...+
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 45555555554332 23334445555555555542 221 122 123344556666666654432222
Q ss_pred CC----CCCccCcceEEEeccCCCCc-------------ccccCCCCCCCcEEEccCCCCCCCC-----cCCCCCCCccE
Q 000660 1134 EG----GLPCAKLIKFNISWCKGLEA-------------LPKGLHNLTSLQELTIGRGVELPSL-----EEDGLPTNLHS 1191 (1367)
Q Consensus 1134 ~~----~~~l~~L~~L~ls~n~~~~~-------------~p~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~~~L~~ 1191 (1367)
.. +..+..|++|.|.+|.+... .......-+.|+++..++|+.-... ..+...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 21 22345566666666553210 0111233445555555555321110 01123455666
Q ss_pred EEecCCcchhhhhhhhcccCCCCCcccEEEecCCCCcCCcCcc-hhhhhcccCCCCCCCCeEEecCCCCCcc----cccc
Q 000660 1192 LDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPL-EDKRLGAALPLLASLTSLEIYNFPNLER----LSSS 1266 (1367)
Q Consensus 1192 L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~l~~-~~n~l~~~~~~l~~L~~L~l~~~~~l~~----l~~~ 1266 (1367)
+.+..|.+...........+.++++|+.|++.+|. +.. ..-.+...++.+++|+.|++++|..-.. +-..
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-----ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-----FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccch-----hhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 66666654444443344445556666666655541 111 1112233455566666666666643221 1111
Q ss_pred c-ccCCCCcEEeecCCCCCcCCCCC------CCccccceeeccCCh
Q 000660 1267 I-VDLQNLTSLYLKNCPKLKYFPEK------GLPSSLLKLSIYDCP 1305 (1367)
Q Consensus 1267 ~-~~l~~L~~L~ls~n~~l~~lp~~------~~~~sL~~L~i~~c~ 1305 (1367)
+ ...|+|+.|.+.+|. ++.=... .-.+.|..|++.+|.
T Consensus 265 l~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1 335666666666662 2221100 013566666666664
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=2.1e-05 Score=92.95 Aligned_cols=194 Identities=19% Similarity=0.218 Sum_probs=112.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccce-EEEEEeCCccCHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDL-KAWTCVSDDFDVKRLTKTI 266 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i 266 (1367)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++.......... .-+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 358999998888888775432 2356789999999999999999864321111000 000000000 000111
Q ss_pred HHHhhhc----CCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEE-EcCchhH
Q 000660 267 LTSIVAS----QNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIV-TTRNQEV 337 (1367)
Q Consensus 267 l~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v 337 (1367)
....... ........+++...+... ..+++-++|+|+++.-+...|..+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 0000000 000112233333322221 235677999999988777778888877766555666554 5555555
Q ss_pred Hhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHH
Q 000660 338 AEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 338 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai 390 (1367)
...+ .....+++++++.++....+.+.+.. ......+....|++.++|.+--+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 4433 23457899999999999999877643 22223456677999999876444
No 66
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.25 E-value=2e-06 Score=94.27 Aligned_cols=287 Identities=18% Similarity=0.167 Sum_probs=180.9
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccc-eEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
..+-+.++|.|||||||++-.+.. ++.-|. .+.++....-.|...+.-.....++.... +-+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~----~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ----PGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc----cchHHHHHHHHHH
Confidence 358899999999999999998886 445564 45556665555666665555555554432 1223444556666
Q ss_pred CCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHHhhhCCCCceeCCCCChH-HHHHHHHhhhcC----
Q 000660 293 SGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDN-DCLAVFAQHSLG---- 367 (1367)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~---- 367 (1367)
.++|.++|+||-.+.- +.-..+...+..+...-.|+.|+|..-. ........+..|+.. ++.++|...+..
T Consensus 86 ~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 7899999999983321 1222233344445556678889887522 234456777777764 788998777633
Q ss_pred --CcchHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhchhhhcccc-------ccCchHHHHHhhhCCChh
Q 000660 368 --SHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSEK-------RCGIIPALAVSYYYLPPT 438 (1367)
Q Consensus 368 --~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~-------~~~i~~~l~~sy~~L~~~ 438 (1367)
-.........+|.++..|.|++|...++..+.- ...+-..-++.....+.+. .....+.+.+||.-|...
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 223445778899999999999999999887754 2333333333222222221 134567899999999999
Q ss_pred HHHHhhhhccCCCCcccCHHHHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhcCcccccc-CCCCceeehHHHHHHHH
Q 000660 439 LKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSRSFLQQSA-TDASLFVMHDLINDLAR 517 (1367)
Q Consensus 439 ~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-~~~~~~~mhdlv~~~a~ 517 (1367)
.+-.|.-++.|...+.-. ...|.+-|-.-. ...-....-+..+++++++...+ .+...|+.-+-++.++.
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998776444 234444432210 01122334467788888876533 23345677777777766
Q ss_pred Hhhc
Q 000660 518 WAAG 521 (1367)
Q Consensus 518 ~~~~ 521 (1367)
.+..
T Consensus 312 aeL~ 315 (414)
T COG3903 312 AELH 315 (414)
T ss_pred HHHH
Confidence 5443
No 67
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.25 E-value=1.3e-06 Score=93.27 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=63.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc--cCHHHHHHHHHHHhhhcCCCCCCCh------HHHH
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD--FDVKRLTKTILTSIVASQNVGDPSL------NSLQ 285 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~~ 285 (1367)
....++|+|++|+|||||++.+|++.... +|+.++|+.+++. .++.++++.+...+-.... +.... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~-~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF-DEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecC-CCCHHHHHHHHHHHH
Confidence 35678999999999999999999975444 8999999998877 7899999998444333222 11111 1222
Q ss_pred HHHHHH-hCCCceEEEEEcCC
Q 000660 286 KELSKQ-LSGKKFLLVLDDVW 305 (1367)
Q Consensus 286 ~~l~~~-l~~k~~LlVlDdv~ 305 (1367)
...... -.++++++++|++.
T Consensus 93 ~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHH
Confidence 222222 34899999999993
No 68
>PTZ00202 tuzin; Provisional
Probab=98.24 E-value=0.00023 Score=79.30 Aligned_cols=169 Identities=13% Similarity=0.148 Sum_probs=101.4
Q ss_pred ccccCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 000660 184 LVDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLT 263 (1367)
Q Consensus 184 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 263 (1367)
+.+.+.|+||++|...+...|...+ ....+++.|.|++|+|||||++.+..... + .+++.-.. +..+++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElL 326 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTL 326 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHH
Confidence 3456789999999999999996432 22356999999999999999999996432 2 13322222 679999
Q ss_pred HHHHHHhhhcCCCC-CCChHHHHHHHHHHh-C-CCceEEEEEcCCCCCc-hhhhhhccccCCCCCCcEEEEEcCchhHHh
Q 000660 264 KTILTSIVASQNVG-DPSLNSLQKELSKQL-S-GKKFLLVLDDVWNRNY-DDWVQLRRPFEVGAPGSKIIVTTRNQEVAE 339 (1367)
Q Consensus 264 ~~il~~l~~~~~~~-~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 339 (1367)
+.++.+++.+.... ..-.+.+++.+.+.- . +++.+||+-==.-.+. ..+.+. ..+.....-|.|++----+.+--
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcch
Confidence 99999999643211 111234444444322 2 5666776653211111 112111 13444455677777544332211
Q ss_pred h---hCCCCceeCCCCChHHHHHHHHhh
Q 000660 340 I---MGTVPSYQLKKLSDNDCLAVFAQH 364 (1367)
Q Consensus 340 ~---~~~~~~~~l~~L~~~~~~~lf~~~ 364 (1367)
. ..--.-|.++.++.++|.+.-.+.
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhc
Confidence 1 011245788999999988876554
No 69
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=1.3e-06 Score=71.23 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=32.7
Q ss_pred ccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccC
Q 000660 1093 SLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCK 1151 (1367)
Q Consensus 1093 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~ 1151 (1367)
+|+.|++++|++....+..|.++++|++|++++|.+....|..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45556666655555444455555666666666555544444455555555555555554
No 70
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.24 E-value=2.4e-06 Score=89.40 Aligned_cols=48 Identities=27% Similarity=0.390 Sum_probs=32.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCc
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 239 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (1367)
.||||+++++++...|... .....+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999522 33456999999999999999999998754
No 71
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.22 E-value=7.1e-06 Score=82.33 Aligned_cols=124 Identities=17% Similarity=0.068 Sum_probs=71.4
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHh
Q 000660 191 YGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSI 270 (1367)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (1367)
+|++..++.+...+... ..+.+.|+|++|+||||+|+.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888889998888542 346888999999999999999998532 112345666655433222111111000
Q ss_pred hhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhh---ccccCCC---CCCcEEEEEcCch
Q 000660 271 VASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQL---RRPFEVG---APGSKIIVTTRNQ 335 (1367)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l---~~~l~~~---~~gs~ilvTtR~~ 335 (1367)
............++.++|+||++.........+ ....... ..+.+||+||...
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 001111222345678999999975322222222 2222221 3678888888865
No 72
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=2.3e-07 Score=95.08 Aligned_cols=132 Identities=18% Similarity=0.210 Sum_probs=83.3
Q ss_pred ccCcceEEEeccCCCCcccccCCCCCCCcEEEccCCCCCCCCcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccc
Q 000660 1139 CAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR 1218 (1367)
Q Consensus 1139 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~ 1218 (1367)
.+.|+++|+|+|.+. .+-+++.-+|.++.|++++|.. ..+..+..+++|+.|||++|.... . ...-..+-+++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i-~~v~nLa~L~~L~~LDLS~N~Ls~----~-~Gwh~KLGNIK 355 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRI-RTVQNLAELPQLQLLDLSGNLLAE----C-VGWHLKLGNIK 355 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccce-eeehhhhhcccceEeecccchhHh----h-hhhHhhhcCEe
Confidence 457888888888743 4445666778888888888843 333446677888888888883221 1 11112566666
Q ss_pred EEEecCCCCcCCcCcchhhhhcccCCCCCCCCeEEecCCCCCccc--ccccccCCCCcEEeecCCCCCcCCCC
Q 000660 1219 HFKISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERL--SSSIVDLQNLTSLYLKNCPKLKYFPE 1289 (1367)
Q Consensus 1219 ~L~l~~~~~~l~~l~~~~n~l~~~~~~l~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~ls~n~~l~~lp~ 1289 (1367)
.|.+++| .++.+. .+..+-+|..|++++|+. +.+ ...++++|.|+.+.+.+|| +..+++
T Consensus 356 tL~La~N--~iE~LS--------GL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 356 TLKLAQN--KIETLS--------GLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred eeehhhh--hHhhhh--------hhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 6666665 222221 233467888888888653 333 2467888889999998887 444544
No 73
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2.1e-05 Score=94.23 Aligned_cols=192 Identities=14% Similarity=0.162 Sum_probs=108.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+........... +..+... ...+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C----~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVC----QSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCccc----HHHHHHh
Confidence 468999999999999986542 245678999999999999999876321111000 0000000 0000000
Q ss_pred HH-----hhhcCCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hhH
Q 000660 268 TS-----IVASQNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QEV 337 (1367)
Q Consensus 268 ~~-----l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v 337 (1367)
.. +..... .....+.+.+.+... ..+++-++|+|++...+......+...+.......++|++|.+ ..+
T Consensus 84 ~g~~~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 84 AGRYVDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred ccCccceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 00 000000 111222222222211 2356669999999766555566666666544455666666644 322
Q ss_pred Hhh-hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHH
Q 000660 338 AEI-MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQT 392 (1367)
Q Consensus 338 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~ 392 (1367)
... .+....+.+++++.++....+.+.+-. ......+....|++.++|.+.-+..
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHH
Confidence 211 223356888999999998888776543 2223446678899999988754443
No 74
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=4.9e-05 Score=86.37 Aligned_cols=201 Identities=16% Similarity=0.151 Sum_probs=124.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHH
Q 000660 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTS 269 (1367)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~ 269 (1367)
+.+|+++++++...|...-. +....-+.|+|.+|+|||+.++.|....+....=...++|++-...+..+++..|+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 89999999999988865422 2233348899999999999999999843221111117899999999999999999999
Q ss_pred hhhcCCCCCCChHHHHHHHHHHhC--CCceEEEEEcCCCCCchhhhhhccccCCCC-CCcEEEE--EcCchhHHhhh---
Q 000660 270 IVASQNVGDPSLNSLQKELSKQLS--GKKFLLVLDDVWNRNYDDWVQLRRPFEVGA-PGSKIIV--TTRNQEVAEIM--- 341 (1367)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~ilv--TtR~~~v~~~~--- 341 (1367)
++.... ......+....+.+.+. ++.+++|||++..-....-+.+...+.... ..++|++ .+-+......+
T Consensus 97 ~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 97 LGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred cCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 974333 44555666666666664 578999999995432111122222222211 1454433 33333322222
Q ss_pred -----CCCCceeCCCCChHHHHHHHHhhhcC-------CcchHHHHHHHHHHhcCCChHHHHHHH
Q 000660 342 -----GTVPSYQLKKLSDNDCLAVFAQHSLG-------SHKLLEEIGKKIVTKCDGLPLAAQTLG 394 (1367)
Q Consensus 342 -----~~~~~~~l~~L~~~~~~~lf~~~~~~-------~~~~~~~~~~~i~~~~~g~PLai~~~~ 394 (1367)
+. ..+..++-+.+|-.+++..++-. .+..++-++...++..|---.||..+-
T Consensus 176 v~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 176 VKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 22 23778899999999999887632 122333344444444444455555543
No 75
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.19 E-value=2.9e-05 Score=89.24 Aligned_cols=181 Identities=13% Similarity=0.175 Sum_probs=106.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEe--CCccCHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV--SDDFDVKRLTKT 265 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~ 265 (1367)
.+++|+++.++.+..++... ..+.+.++|.+|+||||+|+.+++.... ..+. ..++.+ +...... ..++
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~-~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYG-EDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcC-Cccc-cceEEeccccccchH-HHHH
Confidence 45889999999999998543 2345799999999999999999874211 1121 112222 2221111 1112
Q ss_pred HHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCch-hHHhh-hCC
Q 000660 266 ILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQ-EVAEI-MGT 343 (1367)
Q Consensus 266 il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~ 343 (1367)
.+.++....+ .....+-++|+|++..-....+..+...+......+++|+++... .+... ...
T Consensus 88 ~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 2222111110 001235589999986554444556665555444556777766432 22111 122
Q ss_pred CCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHH
Q 000660 344 VPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQT 392 (1367)
Q Consensus 344 ~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~ 392 (1367)
...+++.++++++....+...+.. ...-..+....+++.++|.+--+..
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 346889999999988888776643 2223356778889999998765433
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.6e-05 Score=91.91 Aligned_cols=186 Identities=17% Similarity=0.217 Sum_probs=107.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccc-------------------cceE
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH-------------------FDLK 248 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 248 (1367)
.++||.+...+.+...+..+. -...+.++|++|+||||+|+.+++....... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 458999888888888775432 2356789999999999999999764211100 0011
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHH-HhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcE
Q 000660 249 AWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSK-QLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSK 327 (1367)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (1367)
+.++.+....+..+ +++.+ .... ...+++-++|+|++..-+....+.+...+........
T Consensus 89 ~el~aa~~~gid~i-R~i~~------------------~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRD------------------AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEEeCcccCCHHHH-HHHHH------------------HHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 12222111111111 11111 1111 1224566999999965544455666666654334444
Q ss_pred EEE-EcCchhHHhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcC-CChHHHHHHHhhh
Q 000660 328 IIV-TTRNQEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCD-GLPLAAQTLGGLL 397 (1367)
Q Consensus 328 ilv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~-g~PLai~~~~~~l 397 (1367)
+|+ ||....+...+ .....+++.+++.++....+.+.+.. ...-..+....|++.++ +.+.|+..+-.+.
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444 44334443333 23467899999999988888876643 22233466777888775 4567777765543
No 77
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.18 E-value=4.5e-05 Score=89.06 Aligned_cols=183 Identities=17% Similarity=0.192 Sum_probs=109.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccc--------------------cccce
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ--------------------DHFDL 247 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 247 (1367)
.+++|.+..++.+.+++.... -...+.++|++|+||||+|+.+....... .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 357999999999999886432 24577899999999999999887532110 12222
Q ss_pred EEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcE
Q 000660 248 KAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSK 327 (1367)
Q Consensus 248 ~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (1367)
+++..+...... ..+++++.+... -..+++-++|+|++..-+...+..+...+......+.
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~~~~~-----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDNVKYA-----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHHHhcC-----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 222222111111 112222222110 0124455889999865544556667666655445666
Q ss_pred EEEEcCchh-HHhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHHH
Q 000660 328 IIVTTRNQE-VAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTLG 394 (1367)
Q Consensus 328 ilvTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~ 394 (1367)
+|++|.+.. +...+ .....+++.++++++..+.+...+-. ...-..+.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 666665433 32222 23357888999999988888876533 222234677888999999887665443
No 78
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=6.9e-06 Score=94.59 Aligned_cols=195 Identities=17% Similarity=0.144 Sum_probs=111.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.++........... ..+.....-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCC
Confidence 458999999999998886542 1346789999999999999999874221110000 00111111111111100
Q ss_pred HH---hhhcCCCCCCChHHHHHHHHHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEE-EEcCchhHHhhh-
Q 000660 268 TS---IVASQNVGDPSLNSLQKELSKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKII-VTTRNQEVAEIM- 341 (1367)
Q Consensus 268 ~~---l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~~~- 341 (1367)
.. +.........++.++.+.+... ..++.-++|+|++..-+...++.+...+........+| .||....+...+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00 0000000111222233333221 23566699999998877777888877775544455544 455544443322
Q ss_pred CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHH
Q 000660 342 GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai 390 (1367)
.-...|.+.+++.++..+.+.+.+-. ...-..+....|++.++|.+--+
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHH
Confidence 23457999999999988888776533 22233567788999999987543
No 79
>PF13173 AAA_14: AAA domain
Probab=98.16 E-value=5.4e-06 Score=79.94 Aligned_cols=119 Identities=22% Similarity=0.244 Sum_probs=77.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK 295 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1367)
+++.|.|+.|+||||++++++.+.. ....+++++..+....... ..+ +.+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhccC
Confidence 6899999999999999999997532 2344667766543221100 000 223333333447
Q ss_pred ceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHHhhh------CCCCceeCCCCChHHH
Q 000660 296 KFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIM------GTVPSYQLKKLSDNDC 357 (1367)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 357 (1367)
+.+|++|++... .+|......+.+..+..+|++|+.+......- +....+++.||+..|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 789999999665 56777766666655678999999986554321 2234678999988764
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=98.16 E-value=2.8e-05 Score=88.42 Aligned_cols=181 Identities=15% Similarity=0.185 Sum_probs=104.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccc-eEEEEEeCCccCHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVKRLTKTI 266 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i 266 (1367)
.+++|.++.++.|.+++... ..+-+.++|++|+||||+|+.+++... ...|. ..+-++.++..... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 35789888888888877432 234467999999999999999987421 11221 11112222222222 22222
Q ss_pred HHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCch-hHHhhh-CCC
Q 000660 267 LTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQ-EVAEIM-GTV 344 (1367)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~ 344 (1367)
++....... . .-.++.-++|+|++..-+......+...+......+++|+++... .+...+ ...
T Consensus 85 i~~~~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 222211100 0 001345699999997766555556655554444566777766442 221111 123
Q ss_pred CceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHH
Q 000660 345 PSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 345 ~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai 390 (1367)
..++++++++++....+...+-. ...-..+....|++.++|-.-.+
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 57899999999998888776643 22223456778888888865433
No 81
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.16 E-value=4.5e-06 Score=92.41 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=67.2
Q ss_pred HHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc--CHHHHHHHHHHHhhhcCCC
Q 000660 199 DVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF--DVKRLTKTILTSIVASQNV 276 (1367)
Q Consensus 199 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~ 276 (1367)
++++++..- ++.....|+|++|+||||||++||++.... +|+.++||.+++.. ++.++++.+...+.....
T Consensus 158 rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~- 230 (416)
T PRK09376 158 RIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF- 230 (416)
T ss_pred eeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-
Confidence 455555432 344677899999999999999999975544 89999999999987 777888888743332222
Q ss_pred CCCChH------HHHHHHHHH-hCCCceEEEEEcCC
Q 000660 277 GDPSLN------SLQKELSKQ-LSGKKFLLVLDDVW 305 (1367)
Q Consensus 277 ~~~~~~------~~~~~l~~~-l~~k~~LlVlDdv~ 305 (1367)
+..... ...+.-+.. -.+++++|++|++.
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 111111 111111111 36899999999993
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=3.8e-05 Score=91.15 Aligned_cols=196 Identities=16% Similarity=0.202 Sum_probs=109.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|++..++.+.+++..+. -...+.++|+.|+||||+|+.+++...... |.... .+..-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHH
Confidence 468999999999999886532 235678999999999999999976321111 21100 011111111111
Q ss_pred HHhhhc----CCCCCCChHHHHH---HHHHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEc-CchhHH
Q 000660 268 TSIVAS----QNVGDPSLNSLQK---ELSKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTT-RNQEVA 338 (1367)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~~---~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 338 (1367)
...... ........+++.. .+... ..+++=++|+|++..-+...+..+...+........+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 100000 0000111222222 11110 12334479999997766667777777765544455555544 433443
Q ss_pred hh-hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChH-HHHHHHh
Q 000660 339 EI-MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPL-AAQTLGG 395 (1367)
Q Consensus 339 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 395 (1367)
.. ......+++.++++++....+...+-. ...-..+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 233467899999999998888775532 112234567788999998654 4444433
No 83
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=4.3e-05 Score=92.09 Aligned_cols=196 Identities=14% Similarity=0.172 Sum_probs=110.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccccccc--ceEEEEEeCCccCHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--DLKAWTCVSDDFDVKRLTKT 265 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~ 265 (1367)
.++||-+.-++.|.+++..+. -...+.++|+.|+||||+|+.+.......... ..... ..++.-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 358998888888999886542 24567899999999999999986432111000 00000 00000011111
Q ss_pred HHHHhhhc----CCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEc-Cchh
Q 000660 266 ILTSIVAS----QNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTT-RNQE 336 (1367)
Q Consensus 266 il~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 336 (1367)
|...-... ........+++.+.+... ..++.-++|+|+|...+...+..+...+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 10000000 000111223332222211 12344589999998877777888887776655555665554 4444
Q ss_pred HHhh-hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHH
Q 000660 337 VAEI-MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQT 392 (1367)
Q Consensus 337 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~ 392 (1367)
+... ......+++++++.++..+.+.+.+.. ......+....|++.++|.+--+..
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4322 233467999999999998888776533 2222345677888899887754443
No 84
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=5.7e-05 Score=86.80 Aligned_cols=181 Identities=14% Similarity=0.151 Sum_probs=108.8
Q ss_pred CcccccchhHHHHHHHHhcCCCC----CCCCceEEEEeCCCCCcHHHHHHHHHcCccccc-------------------c
Q 000660 188 AKVYGRETEKKDVVELLLRDDLS----NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQD-------------------H 244 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~ 244 (1367)
.+++|.+.-++.|.+++..+... +..-..-+.++|+.|+|||++|+.++....... |
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35889999999999999764210 001245678999999999999999875311110 1
Q ss_pred cceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccC
Q 000660 245 FDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFE 320 (1367)
Q Consensus 245 F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 320 (1367)
.| ..++.... .....+++.+.+... ..+++-++|+|++...+......+...+.
T Consensus 85 pD-~~~i~~~~---------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 85 PD-VRVVAPEG---------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CC-EEEecccc---------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 11 11111100 011222222211111 12455588889997776666666766665
Q ss_pred CCCCCcEEEEEcCc-hhHHhhh-CCCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHHHHH
Q 000660 321 VGAPGSKIIVTTRN-QEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLG 394 (1367)
Q Consensus 321 ~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 394 (1367)
....+..+|++|.+ ..+...+ +-...+.+.+++.++..+.+.+.. + ...+.+..+++.++|.|..+..+.
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 55556666665555 3443332 234678999999999998887432 1 123557789999999997665443
No 85
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=3.5e-05 Score=93.03 Aligned_cols=191 Identities=16% Similarity=0.168 Sum_probs=111.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.++||.+.-++.|...+..+. -...+.++|..|+||||+|+.++........+. ...+..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 458999999999998886542 234567999999999999999976421111000 00000001111111
Q ss_pred HH-------hhhcCCCCCCChHHH---HHHHHHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-h
Q 000660 268 TS-------IVASQNVGDPSLNSL---QKELSKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-Q 335 (1367)
Q Consensus 268 ~~-------l~~~~~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~ 335 (1367)
.. +... .....+++ .+.+... ..+++-++|+|++..-+....+.+...+.......++|.+|.+ .
T Consensus 84 ~g~~~D~ieidaa---s~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 84 QGRFVDLIEIDAA---SRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred cCCCCCceeeccc---ccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 00 0000 01122222 2222211 2456679999999887767777877777654455555554444 4
Q ss_pred hHHhh-hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 336 EVAEI-MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 336 ~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
.+... ..-...|.+++++.++....+.+.+-. ......+....|++.++|.+-.+..+
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44322 223467999999999999888775422 22223456678999999977644443
No 86
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.13 E-value=8.2e-07 Score=88.74 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=10.4
Q ss_pred CCCCCccEEEecccCCccccCCCCC-CccCcceEEEeccCCCCcccccCCCCCCCcEEEccCCC
Q 000660 1113 HNLRQLQEIEIWECKNLVSFPEGGL-PCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGV 1175 (1367)
Q Consensus 1113 ~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~ 1175 (1367)
.+..++++|+|++|.+.. + +.+. .+.+|+.|++++|.+.. + +.+..++.|+.|++++|.
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~ 75 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNR 75 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS-
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCC
Confidence 344456666666665443 2 1222 34556666666665433 2 234455555555555553
No 87
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=3.2e-06 Score=68.97 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=49.5
Q ss_pred CCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCcEEEccCCC
Q 000660 1116 RQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGV 1175 (1367)
Q Consensus 1116 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~ 1175 (1367)
|+|++|++++|.+....+..+..+++|++|++++|.+....|..|.++++|+.|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 578899999987665555677888999999999998877777888889999999988884
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=5e-05 Score=88.86 Aligned_cols=180 Identities=18% Similarity=0.187 Sum_probs=111.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccc-------------------ccccceE
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-------------------QDHFDLK 248 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 248 (1367)
.++||.+..++.+..++..+. -...+.++|+.|+||||+|+.++..... .+.+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999988888888875442 2347889999999999999988752100 0111122
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEE
Q 000660 249 AWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKI 328 (1367)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (1367)
+.++.+....+.+ .+++++..... -..+++=++|+|++..-+....+.+...+....+.+++
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~-----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL-----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc-----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 3333332222222 12222222100 01245568999999776666677777777665566766
Q ss_pred EEEc-CchhHHhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHH
Q 000660 329 IVTT-RNQEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 329 lvTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai 390 (1367)
|++| ..+.+...+ .....+++++++.++....+.+.+.. ...-..+....|++.++|.+-.+
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 6655 434444332 33467899999999998888877644 22334566778899998877543
No 89
>PRK08727 hypothetical protein; Validated
Probab=98.12 E-value=4.6e-05 Score=81.89 Aligned_cols=147 Identities=18% Similarity=0.119 Sum_probs=87.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK 295 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1367)
..+.|+|..|+|||+||+++++.. ......++++++.+ ....+. +.+. .+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~------------------~~~~-~l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR------------------DALE-AL-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH------------------HHHH-HH-hc
Confidence 559999999999999999998743 22223455665322 111110 1111 11 13
Q ss_pred ceEEEEEcCCCCC-chhhhh-hccccCC-CCCCcEEEEEcCch---------hHHhhhCCCCceeCCCCChHHHHHHHHh
Q 000660 296 KFLLVLDDVWNRN-YDDWVQ-LRRPFEV-GAPGSKIIVTTRNQ---------EVAEIMGTVPSYQLKKLSDNDCLAVFAQ 363 (1367)
Q Consensus 296 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 363 (1367)
.-+||+||+.... ...|.. +...+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3489999995432 123332 2222111 13466799999852 2223333456889999999999999998
Q ss_pred hhcC-CcchHHHHHHHHHHhcCCChHHH
Q 000660 364 HSLG-SHKLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 364 ~~~~-~~~~~~~~~~~i~~~~~g~PLai 390 (1367)
++.. .-.-.+++..-|++.+.|-.-.+
T Consensus 174 ~a~~~~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 7643 22334566777888887655544
No 90
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=1.3e-05 Score=90.02 Aligned_cols=168 Identities=24% Similarity=0.392 Sum_probs=95.1
Q ss_pred HhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCC
Q 000660 1085 AERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLT 1164 (1367)
Q Consensus 1085 ~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~ 1164 (1367)
...+..+.+++.|++++|.+.. +|. + .++|++|.+++|..+..+|..+. ++|+.|++++|..+..+|.
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------ 112 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------ 112 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------
Confidence 3445667889999999986554 552 1 23699999998888877776542 5888888888865555553
Q ss_pred CCcEEEccCCCCCCCCcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEEEecCCCCcCCcCcchhhhhcccCC
Q 000660 1165 SLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALP 1244 (1367)
Q Consensus 1165 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~l~~~~n~l~~~~~ 1244 (1367)
+|+.|+++.+.. ..++ ..+++|+.|.+.++.... . ..+...+|
T Consensus 113 sLe~L~L~~n~~-~~L~--~LPssLk~L~I~~~n~~~---------------------------~-------~~lp~~LP 155 (426)
T PRK15386 113 SVRSLEIKGSAT-DSIK--NVPNGLTSLSINSYNPEN---------------------------Q-------ARIDNLIS 155 (426)
T ss_pred ccceEEeCCCCC-cccc--cCcchHhheecccccccc---------------------------c-------cccccccC
Confidence 466666665421 1111 234566666664331000 0 00000122
Q ss_pred CCCCCCeEEecCCCCCcccccccccCCCCcEEeecCCCC-CcCCCCCCCccccceeeccCChhh
Q 000660 1245 LLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPK-LKYFPEKGLPSSLLKLSIYDCPLI 1307 (1367)
Q Consensus 1245 ~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ls~n~~-l~~lp~~~~~~sL~~L~i~~c~~l 1307 (1367)
++|+.|.+++|..+ .+|..+. .+|+.|+++.|.. .-.++...+|+++ .|++.+|-.+
T Consensus 156 --sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 156 --PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred --CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence 56677777666543 2333222 4677777765521 1234444456666 6777666433
No 91
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.11 E-value=1.8e-05 Score=83.97 Aligned_cols=151 Identities=20% Similarity=0.259 Sum_probs=97.1
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLS 293 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 293 (1367)
...-+.+||++|+||||||+.+....+-.. ..+|..|....-..-.++|+++.... ..+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~----------------~~l~ 220 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE----------------KSLT 220 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH----------------Hhhh
Confidence 467788999999999999999998543222 45677776554444555555543211 1245
Q ss_pred CCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEE--EcCchhH---HhhhCCCCceeCCCCChHHHHHHHHhhhc--
Q 000660 294 GKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIV--TTRNQEV---AEIMGTVPSYQLKKLSDNDCLAVFAQHSL-- 366 (1367)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~-- 366 (1367)
++|.+|.+|.|..-+..+.+. .+|.-..|.-++| ||.++.. +..+....++.|++|..++...++.+..-
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 788999999996654333333 3455567776666 7776542 22344567899999999999988877432
Q ss_pred C---------Ccc---hHHHHHHHHHHhcCCCh
Q 000660 367 G---------SHK---LLEEIGKKIVTKCDGLP 387 (1367)
Q Consensus 367 ~---------~~~---~~~~~~~~i~~~~~g~P 387 (1367)
+ .++ ....+.+-++..|.|-.
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1 111 12345666777777754
No 92
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.5e-05 Score=90.99 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=107.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccccc-------------------ccceE
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQD-------------------HFDLK 248 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 248 (1367)
.++||-+.-++.|..++.... -...+.++|+.|+||||+|+.++...-... .|.-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 458999999999999996542 234678999999999999999876321111 11112
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEE
Q 000660 249 AWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKI 328 (1367)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (1367)
+.++.+....++++ +++++.+... -..++.-++|+|+|..-+......+...+......+++
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~-----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA-----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc-----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 22222222222221 1222221110 11345568999999877666777777777655556666
Q ss_pred EEEcC-chhHHhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHH
Q 000660 329 IVTTR-NQEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQ 391 (1367)
Q Consensus 329 lvTtR-~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~ 391 (1367)
|++|. ...+...+ .....+++++++.++....+.+.+-. ......+....|++.++|.+--+.
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 65543 33333222 23356889999998877666555422 122233456678888888775443
No 93
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=9.3e-05 Score=84.41 Aligned_cols=193 Identities=14% Similarity=0.139 Sum_probs=113.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccccccc--c------eEEEEEeCCccCH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--D------LKAWTCVSDDFDV 259 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~------~~~wv~~s~~~~~ 259 (1367)
.+++|.+..++.+.+.+..+. -...+.++|+.|+||+|+|..+....--+... . ....++ ...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~--~~c-- 89 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID--PDH-- 89 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC--CCC--
Confidence 468999999999999886543 24568899999999999998886532111100 0 000000 000
Q ss_pred HHHHHHHHHHhhh----------cCC---CCCCChHHHHHHHHHHhC-----CCceEEEEEcCCCCCchhhhhhccccCC
Q 000660 260 KRLTKTILTSIVA----------SQN---VGDPSLNSLQKELSKQLS-----GKKFLLVLDDVWNRNYDDWVQLRRPFEV 321 (1367)
Q Consensus 260 ~~~~~~il~~l~~----------~~~---~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 321 (1367)
...+.+...-.. ... ...-.++++. .+.+.+. +++-++|+|++...+......+...+..
T Consensus 90 -~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 90 -PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred -hHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 011111110000 000 0111234432 2333332 4567999999987777777777777765
Q ss_pred CCCCcEEEEEcCch-hHHhhh-CCCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHHHHH
Q 000660 322 GAPGSKIIVTTRNQ-EVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLG 394 (1367)
Q Consensus 322 ~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 394 (1367)
...++.+|++|.+. .+...+ .....+.+.+++.++..+++........ .+....+++.++|.|..+..+.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 55566677766664 333222 2346899999999999999987642211 1222678999999998766554
No 94
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.08 E-value=7.6e-05 Score=77.77 Aligned_cols=91 Identities=18% Similarity=0.260 Sum_probs=64.3
Q ss_pred CCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCch-hHHhhh-CCCCceeCCCCChHHHHHHHHhhhcCCcch
Q 000660 294 GKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQ-EVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLGSHKL 371 (1367)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 371 (1367)
+.+-++|+|++..-+...++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 456689999997766566777877776655566777766653 222222 23357999999999998888876 2 1
Q ss_pred HHHHHHHHHHhcCCChHH
Q 000660 372 LEEIGKKIVTKCDGLPLA 389 (1367)
Q Consensus 372 ~~~~~~~i~~~~~g~PLa 389 (1367)
..+.+..|++.++|.|..
T Consensus 170 ~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 SEEAAELLLALAGGSPGA 187 (188)
T ss_pred CHHHHHHHHHHcCCCccc
Confidence 246788999999998853
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.06 E-value=4.9e-05 Score=93.95 Aligned_cols=166 Identities=25% Similarity=0.313 Sum_probs=95.1
Q ss_pred CcccccchhHH---HHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 000660 188 AKVYGRETEKK---DVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 188 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
.+++|++..+. .+.+++... ....+.++|++|+||||+|+.+++. ...+|.. ++.+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~~---lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHFSS---LNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCccee---ehhhh-hhhH----
Confidence 35788887664 455555332 3456789999999999999999974 3334411 11110 0000
Q ss_pred HHHHHhhhcCCCCCCChHHHHHHHHHHh--CCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEE--EcCch--hHH
Q 000660 265 TILTSIVASQNVGDPSLNSLQKELSKQL--SGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIV--TTRNQ--EVA 338 (1367)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~--~v~ 338 (1367)
+.........+.+ .+++.++|+||++.-+...++.+...+. .|+.++| ||.+. .+.
T Consensus 92 ---------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 92 ---------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred ---------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 1111111121111 2467799999997765556666654443 3555555 34442 122
Q ss_pred hhh-CCCCceeCCCCChHHHHHHHHhhhcC--------CcchHHHHHHHHHHhcCCCh
Q 000660 339 EIM-GTVPSYQLKKLSDNDCLAVFAQHSLG--------SHKLLEEIGKKIVTKCDGLP 387 (1367)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~--------~~~~~~~~~~~i~~~~~g~P 387 (1367)
... .-...+.+++++.++...++.+.+-. ...-..+....|++.+.|..
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 211 22457899999999999998876531 11223455677777777753
No 96
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=7.4e-08 Score=98.87 Aligned_cols=178 Identities=17% Similarity=0.256 Sum_probs=105.3
Q ss_pred CccceeeecccCCcc-cCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCccc--ccCCCCCCCcE
Q 000660 1092 TSLEIIRIDFCKNLK-ILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALP--KGLHNLTSLQE 1168 (1367)
Q Consensus 1092 ~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p--~~~~~l~~L~~ 1168 (1367)
+.|++|||++..++. .+-..+..|.+|+.|.|.++.+...+...+..-.+|+.|+++.|.-..... --+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 357788888776663 223344567777777777777766665555555677777777776443321 12456777777
Q ss_pred EEccCCCCCCCCcC---CCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEEEecCCCCcCCcCcchhhhhcccCCC
Q 000660 1169 LTIGRGVELPSLEE---DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALPL 1245 (1367)
Q Consensus 1169 L~l~~n~~~~~~~~---~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~l~~~~n~l~~~~~~ 1245 (1367)
|+++.|......-. ...-++|+.|+|+|+. .+ + ..+.++.....
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r----------------------------rn---l--~~sh~~tL~~r 311 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR----------------------------RN---L--QKSHLSTLVRR 311 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhH----------------------------hh---h--hhhHHHHHHHh
Confidence 77777753322110 0122345555555441 11 1 11222223335
Q ss_pred CCCCCeEEecCCCCCcc-cccccccCCCCcEEeecCCCCCcCCCCC----CCccccceeeccCC
Q 000660 1246 LASLTSLEIYNFPNLER-LSSSIVDLQNLTSLYLKNCPKLKYFPEK----GLPSSLLKLSIYDC 1304 (1367)
Q Consensus 1246 l~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~ls~n~~l~~lp~~----~~~~sL~~L~i~~c 1304 (1367)
+++|..||+++|..++. .-..+..++.|++|.++.|- .-+|.. .-.|+|.+|++.||
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 68888888888776553 33456778889999998883 223331 12488999999888
No 97
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00013 Score=82.82 Aligned_cols=198 Identities=14% Similarity=0.173 Sum_probs=115.8
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccccc--ccceEEEEEeCCccCHHHHHH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQD--HFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
-..++|.++..+.+...+..+. -...+.|+|+.|+||||+|+.+....--.. .+.... ....+..-...+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 3568999999999999986542 245688999999999999998876421100 011110 000111111222
Q ss_pred HHHHH-------hhhcC-C-----CCCCChHHHHHHHHHHh-----CCCceEEEEEcCCCCCchhhhhhccccCCCCCCc
Q 000660 265 TILTS-------IVASQ-N-----VGDPSLNSLQKELSKQL-----SGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGS 326 (1367)
Q Consensus 265 ~il~~-------l~~~~-~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 326 (1367)
.+... +..+. . .....++++. .+.+.+ .+++-++|+|++...+....+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22221 10000 0 0112234433 333333 2566799999998777666777776665544445
Q ss_pred E-EEEEcCchhHHhhh-CCCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHHHHH
Q 000660 327 K-IIVTTRNQEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLG 394 (1367)
Q Consensus 327 ~-ilvTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 394 (1367)
. |++|++...+.... .....+.+.+++.++..+++.+...... ...+....|++.++|.|..+..+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5 44554443333222 2346899999999999999987432211 224557789999999998766544
No 98
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.03 E-value=5.7e-05 Score=81.32 Aligned_cols=152 Identities=13% Similarity=0.150 Sum_probs=89.6
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
.+.+.|+|+.|+|||+||+.+++... ..-..+.++.+..... ...+..+.+ ..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~---------------------~~~~~~~~~----~~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW---------------------FVPEVLEGM----EQ 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh---------------------hhHHHHHHh----hh
Confidence 35789999999999999999987432 2223345665532100 001111111 11
Q ss_pred CceEEEEEcCCCCC-chhhhhhc-cccCC-CCCC-cEEEEEcCch---------hHHhhhCCCCceeCCCCChHHHHHHH
Q 000660 295 KKFLLVLDDVWNRN-YDDWVQLR-RPFEV-GAPG-SKIIVTTRNQ---------EVAEIMGTVPSYQLKKLSDNDCLAVF 361 (1367)
Q Consensus 295 k~~LlVlDdv~~~~-~~~~~~l~-~~l~~-~~~g-s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 361 (1367)
--++++||+.... ...|+... ..+.. ...| .++|+||+.. ++...+....+++++++++++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 2388999995532 13444322 22211 1123 4799999753 33444555678999999999999998
Q ss_pred HhhhcC-CcchHHHHHHHHHHhcCCChHHHHHHH
Q 000660 362 AQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTLG 394 (1367)
Q Consensus 362 ~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~ 394 (1367)
.+++.. .-.--+++..-|++.+.|..-++..+-
T Consensus 177 ~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 177 QLRARLRGFELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 876643 223345677778888877655554443
No 99
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.03 E-value=5.3e-06 Score=98.49 Aligned_cols=104 Identities=25% Similarity=0.319 Sum_probs=59.4
Q ss_pred cCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCcEE
Q 000660 1090 NNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQEL 1169 (1367)
Q Consensus 1090 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L 1169 (1367)
..++|+.|++++|++.. +|..+..+..|++|.+++|+.. ..+..+..+.++..|.+.+|.+. .++..++.+++++.|
T Consensus 184 ~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L 260 (394)
T COG4886 184 NLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETL 260 (394)
T ss_pred hhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcccccccee
Confidence 45566666666666655 4443344445666666666422 23344555566666666666533 234556666667777
Q ss_pred EccCCCCCCCCcCCCCCCCccEEEecCC
Q 000660 1170 TIGRGVELPSLEEDGLPTNLHSLDIRGN 1197 (1367)
Q Consensus 1170 ~l~~n~~~~~~~~~~~~~~L~~L~L~~n 1197 (1367)
++++|. +..++..+...+|+.|++++|
T Consensus 261 ~~s~n~-i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 261 DLSNNQ-ISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred cccccc-ccccccccccCccCEEeccCc
Confidence 777663 333333556666677777666
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.02 E-value=6.6e-05 Score=81.06 Aligned_cols=151 Identities=20% Similarity=0.163 Sum_probs=88.0
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
.+.+.|+|..|+|||+||+.+++... .... ...+++..... .. + ... .
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~-------------------~~~-~ 89 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F-------------------DFD-P 89 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H-------------------hhc-c
Confidence 46788999999999999999997431 1122 23444432210 00 0 011 2
Q ss_pred CceEEEEEcCCCCCchhhhhhccccCCC-CCCc-EEEEEcCchhHHh--------hhCCCCceeCCCCChHHHHHHHHhh
Q 000660 295 KKFLLVLDDVWNRNYDDWVQLRRPFEVG-APGS-KIIVTTRNQEVAE--------IMGTVPSYQLKKLSDNDCLAVFAQH 364 (1367)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~ 364 (1367)
..-+||+||+...+...-..+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347889999654322323343333221 2333 4677766533211 2223467899999998877777654
Q ss_pred hcC-CcchHHHHHHHHHHhcCCChHHHHHHHhhh
Q 000660 365 SLG-SHKLLEEIGKKIVTKCDGLPLAAQTLGGLL 397 (1367)
Q Consensus 365 ~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 397 (1367)
+-. ...-.+++...+++.+.|.+..+..+-..+
T Consensus 170 ~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 322 223345677788888999998887776655
No 101
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.01 E-value=3.7e-06 Score=99.75 Aligned_cols=182 Identities=23% Similarity=0.251 Sum_probs=111.0
Q ss_pred ccCCccceeeecccCCcccCccccCCCC-CccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCc
Q 000660 1089 DNNTSLEIIRIDFCKNLKILPSGLHNLR-QLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQ 1167 (1367)
Q Consensus 1089 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~ 1167 (1367)
..++.++.|++.+|.+.. +|.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|...+.+++|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 344677888888877776 444455553 7888888887544 34455667778888888888844 4444444677888
Q ss_pred EEEccCCCCCCCCcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEEEecCCCCcCCcCcchhhhhcccCCCCC
Q 000660 1168 ELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALPLLA 1247 (1367)
Q Consensus 1168 ~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~l~~~~n~l~~~~~~l~ 1247 (1367)
.|++++|......+....+..|++|.+++|.... ....+..+.++..+.+.++ .+..+ ...+..++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n--~~~~~-------~~~~~~l~ 255 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNN--KLEDL-------PESIGNLS 255 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCc--eeeec-------cchhcccc
Confidence 8888888433332222455668888888873111 1122334455555554443 11111 11344567
Q ss_pred CCCeEEecCCCCCcccccccccCCCCcEEeecCCCCCcCCCC
Q 000660 1248 SLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPE 1289 (1367)
Q Consensus 1248 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ls~n~~l~~lp~ 1289 (1367)
+++.|++++|. +..++. +..+.+|+.|++++|.....+|.
T Consensus 256 ~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 256 NLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccceecccccc-cccccc-ccccCccCEEeccCccccccchh
Confidence 78888888854 455555 77888888888888854444443
No 102
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=2.2e-05 Score=88.23 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=16.8
Q ss_pred CCccEEEecccCCccccCCCCCCccCcceEEEecc
Q 000660 1116 RQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWC 1150 (1367)
Q Consensus 1116 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n 1150 (1367)
++|++|++++|.... .|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 366666666665432 232222 35666666554
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.00 E-value=8.6e-05 Score=78.69 Aligned_cols=185 Identities=16% Similarity=0.186 Sum_probs=101.6
Q ss_pred ccccc-chhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 189 KVYGR-ETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 189 ~~vGr-~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
-++|. .+..-...+.+.... +.....+.|+|..|+|||.|.+++++...-...=..+++++ ..++...+.
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~ 80 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFA 80 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHH
Confidence 34564 333344445554432 22455688999999999999999998432111112344553 456666666
Q ss_pred HHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCc-hhhhh-hccccCC-CCCCcEEEEEcCch---------
Q 000660 268 TSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNY-DDWVQ-LRRPFEV-GAPGSKIIVTTRNQ--------- 335 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~ilvTtR~~--------- 335 (1367)
..+.. ...+ .++..+++ -=+|++||+..-.. ..|.. +...+.. ...|-+||+|++..
T Consensus 81 ~~~~~------~~~~----~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 81 DALRD------GEIE----EFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHHT------TSHH----HHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHHc------ccch----hhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 66643 1222 33344442 34889999965432 22333 2211111 13466899999642
Q ss_pred hHHhhhCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 336 EVAEIMGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 336 ~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
++...+...-++++++++.++-.+++.+.+-. .-.--++++.-|++.+.+..-.+..+
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHH
Confidence 23344455568999999999999999888754 22334566666777776655544433
No 104
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=6.7e-05 Score=87.71 Aligned_cols=200 Identities=14% Similarity=0.146 Sum_probs=111.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEE-eCCccCHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC-VSDDFDVKRLTKTI 266 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 266 (1367)
.+++|.+.-++.|..++..+. -...+.++|+.|+||||+|+.+++............|.. +...+..=...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 358999988999988886432 234577999999999999999876432211111111110 00000000111111
Q ss_pred HHHhhhc----CCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEc-CchhH
Q 000660 267 LTSIVAS----QNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTT-RNQEV 337 (1367)
Q Consensus 267 l~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v 337 (1367)
....... ........+++.+..... ..+++-++|+|++..-+...++.+...+......+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 1100000 000111233333322111 12455688999997766567888877776655566666555 44444
Q ss_pred HhhhC-CCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHH
Q 000660 338 AEIMG-TVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQT 392 (1367)
Q Consensus 338 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~ 392 (1367)
...+. ....++++++++++....+...+-. ...-..+.+..|++.++|.+--+..
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 33221 2346889999999988877765532 2223457788899999997754433
No 105
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00011 Score=88.90 Aligned_cols=197 Identities=14% Similarity=0.191 Sum_probs=112.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccc--eEEEEEeCCccCHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD--LKAWTCVSDDFDVKRLTKT 265 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~ 265 (1367)
.+++|.+..++.|..++..+. -..-+.++|+.|+||||+|+.+++......... ...+-.+. .-...+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccHHHHH
Confidence 468999999999999986542 245678999999999999999986422111100 00000000 0011111
Q ss_pred HHHHhhhc----CCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEc-Cchh
Q 000660 266 ILTSIVAS----QNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTT-RNQE 336 (1367)
Q Consensus 266 il~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 336 (1367)
|...-... ........+++.+.+... ..+++-++|+|++...+....+.+...+......+++|++| ..+.
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 11110000 000112233333222111 12445589999997766566777777776555566665544 4444
Q ss_pred HHhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 337 VAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 337 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
+...+ .....+++..++.++....+.+.+-. ......+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 43222 23467899999999998888876533 22223467788899999988655443
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=9.3e-05 Score=89.06 Aligned_cols=175 Identities=14% Similarity=0.184 Sum_probs=105.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccccc-------------------ccceE
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQD-------------------HFDLK 248 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 248 (1367)
.+++|.+.-++.+..++.... -...+.++|+.|+||||+|+.+........ .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 358999999999999886542 235567999999999999999975321110 11112
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCC
Q 000660 249 AWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAP 324 (1367)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 324 (1367)
+++..+.. ...+++.+.+... ..+++-++|+|++..-+......+...+.....
T Consensus 91 ~ei~~~~~----------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 91 IEVDAASN----------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred eEeecccc----------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 22221111 1122222221111 135666999999977665667777777765445
Q ss_pred CcEEEEEcCc-hhHHhh-hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHH
Q 000660 325 GSKIIVTTRN-QEVAEI-MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLA 389 (1367)
Q Consensus 325 gs~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLa 389 (1367)
.+.+|.+|.+ ..+... ......+++++++.++....+.+.+-. ......+....|++.++|.+--
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRD 216 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 5666655543 333211 112357889999999988877765432 2222345667888999997753
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00014 Score=86.96 Aligned_cols=198 Identities=13% Similarity=0.188 Sum_probs=112.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+++.......... ..++.=...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 357898888888888885432 2456778999999999999999864321110000 0000001111111
Q ss_pred HHhhhc----CCCCCCChHHHH---HHHHH-HhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hhHH
Q 000660 268 TSIVAS----QNVGDPSLNSLQ---KELSK-QLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QEVA 338 (1367)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~---~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 338 (1367)
...... .......++++. +.+.. -..+++-+||+|++..-+...+..|...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 100000 000011122222 11111 12356679999999776666677777777544345555555544 4443
Q ss_pred hhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCC-hHHHHHHHhhh
Q 000660 339 EIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGL-PLAAQTLGGLL 397 (1367)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~-PLai~~~~~~l 397 (1367)
..+ .....+++++++.++....+...+.. ...-..+.+..|++.++|. -.|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222 22357899999999999888876543 2223456778899999985 46777776554
No 108
>PRK09087 hypothetical protein; Validated
Probab=97.98 E-value=4.9e-05 Score=80.77 Aligned_cols=140 Identities=14% Similarity=0.146 Sum_probs=86.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
.+.+.|+|+.|+|||+|++.++.... ..+++.. .+..+++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~----------------------~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA----------------------AAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh----------------------hhc
Confidence 36689999999999999999887421 1133221 111111111 111
Q ss_pred CceEEEEEcCCCCC--chhhhhhccccCCCCCCcEEEEEcCc---------hhHHhhhCCCCceeCCCCChHHHHHHHHh
Q 000660 295 KKFLLVLDDVWNRN--YDDWVQLRRPFEVGAPGSKIIVTTRN---------QEVAEIMGTVPSYQLKKLSDNDCLAVFAQ 363 (1367)
Q Consensus 295 k~~LlVlDdv~~~~--~~~~~~l~~~l~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 363 (1367)
-+|++||+.... ...+-.+...+. ..|..||+|++. ++....+....+++++++++++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 278889995431 122222222222 346678998873 33444555667899999999999999998
Q ss_pred hhcC-CcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 364 HSLG-SHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 364 ~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
++-. .-.--+++..-|++.+.|..-++..+
T Consensus 165 ~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 165 LFADRQLYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHcCCCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 8743 22233567777888888777666543
No 109
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.97 E-value=7.1e-07 Score=100.14 Aligned_cols=136 Identities=25% Similarity=0.297 Sum_probs=104.1
Q ss_pred chhhHHhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCccccc
Q 000660 1080 KLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKG 1159 (1367)
Q Consensus 1080 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~ 1159 (1367)
.+..+|..+.++..|++|||+.|++.. +|..+..|+ |+.|.+++|+ ++.+|..++..+.|..||.+.|. ...+|..
T Consensus 109 ~~r~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsq 184 (722)
T KOG0532|consen 109 CIRTIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ 184 (722)
T ss_pred cceecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHH
Confidence 344678888899999999999998876 677777775 8999998874 56788888888899999999998 4566778
Q ss_pred CCCCCCCcEEEccCCCCCCCCcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEEEecCC
Q 000660 1160 LHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISEC 1225 (1367)
Q Consensus 1160 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 1225 (1367)
++.+.+|+.|.+..|.....+++.+ .-.|..||++.|.... .+-.|.+++.|++|.|.+|
T Consensus 185 l~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred hhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee-----cchhhhhhhhheeeeeccC
Confidence 8889999999999887766666666 4568888888884332 2234556777777777765
No 110
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.94 E-value=1.7e-05 Score=92.01 Aligned_cols=180 Identities=13% Similarity=0.106 Sum_probs=98.3
Q ss_pred cCcccccchhHHHHHHHHhcCCCC-------CCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLS-------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDV 259 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 259 (1367)
..++.|+++.++++.+.+...-.. +-...+-+.++|++|+|||++|+++++.. ...| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC--CCCE-----Eecch----
Confidence 457899999999998877421100 11234568899999999999999999843 3333 22211
Q ss_pred HHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCC-----------ch---hhhhhccccCC--CC
Q 000660 260 KRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRN-----------YD---DWVQLRRPFEV--GA 323 (1367)
Q Consensus 260 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~ 323 (1367)
..+...... .....+...+...-...+.+|++|+++... .. .+..+...+.. ..
T Consensus 190 ~~l~~~~~g----------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRKYIG----------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHHhhh----------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 111111000 001111222222223467899999985421 01 12222222211 13
Q ss_pred CCcEEEEEcCchhHH-hhh----CCCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCCh
Q 000660 324 PGSKIIVTTRNQEVA-EIM----GTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLP 387 (1367)
Q Consensus 324 ~gs~ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~P 387 (1367)
.+.+||.||...... ..+ .-...+.+...+.++..++|..++.+.......-...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCC
Confidence 467788888754321 111 1235688999999999999998775521110012355677776653
No 111
>PRK05642 DNA replication initiation factor; Validated
Probab=97.93 E-value=0.00011 Score=79.10 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=90.0
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
...+.|+|..|+|||.||+++++... ..-..++|++.. ++... . ..+.+.+++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~------~~~~~---------------~----~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLA------ELLDR---------------G----PELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHH------HHHhh---------------h----HHHHHhhhh
Confidence 36789999999999999999987422 112345666542 11110 0 112222222
Q ss_pred CceEEEEEcCCCCC-chhhhh-hccccCC-CCCCcEEEEEcCchh---------HHhhhCCCCceeCCCCChHHHHHHHH
Q 000660 295 KKFLLVLDDVWNRN-YDDWVQ-LRRPFEV-GAPGSKIIVTTRNQE---------VAEIMGTVPSYQLKKLSDNDCLAVFA 362 (1367)
Q Consensus 295 k~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 362 (1367)
-. ++|+||+.... ...|.. +...+.. ...|..||+|++... +...+....++++++++.++-.++++
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 68899995331 134543 3333321 234667888887532 22223344678999999999999998
Q ss_pred hhhcC-CcchHHHHHHHHHHhcCCChHHHHHHHh
Q 000660 363 QHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTLGG 395 (1367)
Q Consensus 363 ~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~~ 395 (1367)
.++.. .-.--+++..-|++.+.|-.-.+..+-.
T Consensus 177 ~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 177 LRASRRGLHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 66543 2222356777788888876655554443
No 112
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00024 Score=86.41 Aligned_cols=194 Identities=14% Similarity=0.189 Sum_probs=108.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccc---c-ceEEE-EEeCCccCHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH---F-DLKAW-TCVSDDFDVKRL 262 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~w-v~~s~~~~~~~~ 262 (1367)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.++...-.... + .|... .+....+++.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 358999999999999986542 2456679999999999999999753211100 0 00000 0000000000
Q ss_pred HHHHHHHhhhcCCCCCCChHHHHHHHHHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEE-EEEcCchhHHhh
Q 000660 263 TKTILTSIVASQNVGDPSLNSLQKELSKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKI-IVTTRNQEVAEI 340 (1367)
Q Consensus 263 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i-lvTtR~~~v~~~ 340 (1367)
.+.+........++++.+.+... ..+++-++|+|++..-....+..+...+........+ ++|++...+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000000011122222222211 2356669999999776666777777766554444554 455555544432
Q ss_pred -hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChH-HHHHHH
Q 000660 341 -MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPL-AAQTLG 394 (1367)
Q Consensus 341 -~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 394 (1367)
......+++.+++.++....+...+-. ......+.+..|++.++|.+- |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 233468999999999998888765432 122234567789999988664 444333
No 113
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.92 E-value=0.0002 Score=74.42 Aligned_cols=193 Identities=17% Similarity=0.172 Sum_probs=100.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+|||.++-++++.=.+..... .+..+--+.++|++|.||||||..+++.-.+ .+. +.-........-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGV--NLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--CeE----ecccccccChhhHHHHH
Confidence 4699999888887766654322 3456778999999999999999999984322 221 11111111112222333
Q ss_pred HHhhhcCCCCCCChHHH----HHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHHhhhC-
Q 000660 268 TSIVASQNVGDPSLNSL----QKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMG- 342 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~~~~----~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 342 (1367)
..+....-.-.+++..+ .+.+.-.+.+=+.=||+.--. .-..+.-.++ +-+-|=.|||...+..-+.
T Consensus 99 t~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp-----~Arsv~ldLp---pFTLIGATTr~G~lt~PLrd 170 (332)
T COG2255 99 TNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGP-----AARSIRLDLP---PFTLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCC-----ccceEeccCC---CeeEeeeccccccccchhHH
Confidence 33221110000111111 111111111111111111110 0011111121 1233456999755443332
Q ss_pred -CCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHHHh
Q 000660 343 -TVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTLGG 395 (1367)
Q Consensus 343 -~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~~ 395 (1367)
-..+.+++--+.+|-.++..+.+.- .-.-.++.+.+|+++..|-|--+.-+-+
T Consensus 171 RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 171 RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHH
Confidence 1245778888999999999888743 3334467789999999999975544443
No 114
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00025 Score=87.13 Aligned_cols=195 Identities=14% Similarity=0.173 Sum_probs=111.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|.+.-++.|..++..+. -...+.++|+.|+||||+|+.++.......... ....++.-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 368999999999988886432 235667999999999999999986421111000 000111112222222
Q ss_pred HHhhhcC---C-CCCCChHHHHHHH---HHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hhHH
Q 000660 268 TSIVASQ---N-VGDPSLNSLQKEL---SKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QEVA 338 (1367)
Q Consensus 268 ~~l~~~~---~-~~~~~~~~~~~~l---~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 338 (1367)
....... . ......+++.+.+ ... ..+++-++|+|++..-+....+.|...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 2111000 0 0112223322221 111 1245668999999666555666776666554455666665543 3333
Q ss_pred hhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 339 EIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
..+ .....+.++.++.++....+.+.+.. ......+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 23357889999999988888776543 22233567788999999988655444
No 115
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.90 E-value=4.4e-05 Score=85.35 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=64.0
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc--cCHHHHHHHHHHHhhhcCCCCCCCh-----HHHHH
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD--FDVKRLTKTILTSIVASQNVGDPSL-----NSLQK 286 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~~~-----~~~~~ 286 (1367)
....++|+|++|+|||||++.+++.... ++|+..+||.+.+. .++.++++.++..+........... +.+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4567899999999999999999986433 37999999999976 7899999998665544332111111 11122
Q ss_pred HHHHH-hCCCceEEEEEcCC
Q 000660 287 ELSKQ-LSGKKFLLVLDDVW 305 (1367)
Q Consensus 287 ~l~~~-l~~k~~LlVlDdv~ 305 (1367)
..... -++++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22222 35899999999993
No 116
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00021 Score=89.70 Aligned_cols=188 Identities=12% Similarity=0.080 Sum_probs=109.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+........... .+... ...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHH
Confidence 358999999999999986542 23567899999999999999997643211110000 00000 0000100
Q ss_pred HH---------hhhcCCCCCCChHHHHHH---HHH-HhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEc-C
Q 000660 268 TS---------IVASQNVGDPSLNSLQKE---LSK-QLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTT-R 333 (1367)
Q Consensus 268 ~~---------l~~~~~~~~~~~~~~~~~---l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R 333 (1367)
.. +... ....++++.+. +.. -..+++-++|||++...+...++.|+..+..-...+.+|++| .
T Consensus 83 ~g~~~~~dv~eidaa---s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 83 PGGPGSLDVTEIDAA---SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred cCCCCCCcEEEeccc---ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 00 0000 11122333221 111 123555589999998877777888888877655566655555 4
Q ss_pred chhHHhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHH
Q 000660 334 NQEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 334 ~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai 390 (1367)
...+...+ .....|++..++.++..+.+.+..-. ......+....|++.++|.+..+
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 44444333 23467899999999988877765422 22223455677899999977443
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00028 Score=82.37 Aligned_cols=180 Identities=15% Similarity=0.226 Sum_probs=103.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccc------cccceEE-EEEeCCccCHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ------DHFDLKA-WTCVSDDFDVK 260 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~-wv~~s~~~~~~ 260 (1367)
.+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.+.+..... ..|...+ -+......+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 357999999999999986432 24678899999999999999997632110 1121111 11111111111
Q ss_pred HHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEc-CchhHHh
Q 000660 261 RLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTT-RNQEVAE 339 (1367)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~ 339 (1367)
..+++++++... -..+++-++|+|++.......+..+...+......+.+|++| +...+..
T Consensus 92 -~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 92 -DIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred -HHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 111222211100 012455589999996554455666665554433445555554 3333322
Q ss_pred h-hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHH
Q 000660 340 I-MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 340 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai 390 (1367)
. ......++++++++++....+...+.. ...-..+.+..|++.++|.+-.+
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 2 223357899999999988888776643 22233567788888998865533
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00035 Score=84.10 Aligned_cols=198 Identities=16% Similarity=0.121 Sum_probs=112.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|.+.-++.|..++..+. -...+.++|+.|+||||+|+.++....-....+ +-.+... ...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhh
Confidence 458999999999999986542 245578999999999999999986321111000 0000000 0011111
Q ss_pred HH---------hhhcCCCCCCChHHHHHHHHHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEE-EcCchh
Q 000660 268 TS---------IVASQNVGDPSLNSLQKELSKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIV-TTRNQE 336 (1367)
Q Consensus 268 ~~---------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~ 336 (1367)
.. +..........+.++.+.+... ..+++-++|+|++..-+....+.|...+........+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000000111122222222211 124556899999987776777788777766555555554 544444
Q ss_pred HHhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChH-HHHHHHhhh
Q 000660 337 VAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPL-AAQTLGGLL 397 (1367)
Q Consensus 337 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l 397 (1367)
+...+ .-...+++..++.++..+.+.+.+.. ......+....|++.++|-+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44322 23467999999999988888765533 222234566778889998664 555544433
No 119
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.00039 Score=77.35 Aligned_cols=218 Identities=16% Similarity=0.163 Sum_probs=130.1
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTI 266 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (1367)
+..++||+.|+..+.+++...- .....+-+.|.|.+|.|||.+...++.+..-...=..++++++-.-....+++..|
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 5679999999999999987542 23456788999999999999999999764322111345777777666788899999
Q ss_pred HHHhhhcCCCCCCChHHHHHHHHHHhCCC--ceEEEEEcCCCCCchhhhhhccccCC-CCCCcEEEEEcCch--hHHh--
Q 000660 267 LTSIVASQNVGDPSLNSLQKELSKQLSGK--KFLLVLDDVWNRNYDDWVQLRRPFEV-GAPGSKIIVTTRNQ--EVAE-- 339 (1367)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~--~v~~-- 339 (1367)
...+..... ......+.+..+..+..+. -+|+|+|.++.-....-..+...|.+ .-+++|+|+.--.. +..+
T Consensus 227 ~~~~~q~~~-s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 227 FSSLLQDLV-SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHhc-CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 888843322 1122245556666666543 58999999843211122223333333 24566665543211 1111
Q ss_pred --hhC-----CCCceeCCCCChHHHHHHHHhhhcC--C----cchHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHH
Q 000660 340 --IMG-----TVPSYQLKKLSDNDCLAVFAQHSLG--S----HKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREW 406 (1367)
Q Consensus 340 --~~~-----~~~~~~l~~L~~~~~~~lf~~~~~~--~----~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w 406 (1367)
.+. ....+..++-+.++-.++|..+.-. . +...+-.|++++.-.|-+--|+-+.-+.+.= -..+|
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI--~E~e~ 383 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEI--AEIEK 383 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHH--HHHHH
Confidence 111 2246778999999999999988644 1 1223333444444444555555555444321 13455
Q ss_pred HHH
Q 000660 407 ERV 409 (1367)
Q Consensus 407 ~~~ 409 (1367)
+..
T Consensus 384 r~~ 386 (529)
T KOG2227|consen 384 RKI 386 (529)
T ss_pred hhc
Confidence 544
No 120
>PF14516 AAA_35: AAA-like domain
Probab=97.87 E-value=0.0028 Score=72.14 Aligned_cols=202 Identities=16% Similarity=0.120 Sum_probs=120.6
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-----cCHHH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-----FDVKR 261 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~~ 261 (1367)
.+-.|.|...-+++.+.+.+. ...+.|.|+-.+|||+|...+.+..+-. .+ .++++++..- .+..+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHH
Confidence 344678886666777777543 3688999999999999999998754322 34 3557776652 35666
Q ss_pred HHHHHHHHhhhcCCCC----------CCChHHHHHHHHHHh-C--CCceEEEEEcCCCCCc------hhhhhhccccCCC
Q 000660 262 LTKTILTSIVASQNVG----------DPSLNSLQKELSKQL-S--GKKFLLVLDDVWNRNY------DDWVQLRRPFEVG 322 (1367)
Q Consensus 262 ~~~~il~~l~~~~~~~----------~~~~~~~~~~l~~~l-~--~k~~LlVlDdv~~~~~------~~~~~l~~~l~~~ 322 (1367)
+++.++..+...-... ..........+.+.+ . +++.+|++|+|..... +-+..++......
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 7777766665433211 112223344444432 2 6899999999954321 1121222211111
Q ss_pred C----CCcEEEEEcCchhH---Hhh----hCCCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHH
Q 000660 323 A----PGSKIIVTTRNQEV---AEI----MGTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQ 391 (1367)
Q Consensus 323 ~----~gs~ilvTtR~~~v---~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 391 (1367)
. ...-.+|...+.+. .+. ......+.|++++.+|...|..++-..-. .+..++|...+||+|.-+.
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~---~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS---QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC---HHHHHHHHHHHCCCHHHHH
Confidence 0 11112222222111 111 11224788999999999999988754322 2238889999999999999
Q ss_pred HHHhhhcCC
Q 000660 392 TLGGLLRGK 400 (1367)
Q Consensus 392 ~~~~~l~~~ 400 (1367)
.++..+..+
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999999664
No 121
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.83 E-value=0.00035 Score=82.51 Aligned_cols=166 Identities=13% Similarity=0.129 Sum_probs=101.1
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
..-+.|+|..|+|||+|++++.+.......-..+++++ ..++...+...+.... .....+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~--------~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH--------KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh--------hHHHHHHHHhc-
Confidence 45688999999999999999988321111111233443 3567777777664311 11223344444
Q ss_pred CceEEEEEcCCCCCc-hhh-hhhccccCC-CCCCcEEEEEcCch---------hHHhhhCCCCceeCCCCChHHHHHHHH
Q 000660 295 KKFLLVLDDVWNRNY-DDW-VQLRRPFEV-GAPGSKIIVTTRNQ---------EVAEIMGTVPSYQLKKLSDNDCLAVFA 362 (1367)
Q Consensus 295 k~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 362 (1367)
+.-+||+||+..... ..| +.+...+.. ...|..||+|+... .+...+...-++.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 334888999954321 122 233332221 13345788887642 223333444578899999999999998
Q ss_pred hhhcCC---cchHHHHHHHHHHhcCCChHHHHHHHh
Q 000660 363 QHSLGS---HKLLEEIGKKIVTKCDGLPLAAQTLGG 395 (1367)
Q Consensus 363 ~~~~~~---~~~~~~~~~~i~~~~~g~PLai~~~~~ 395 (1367)
+++-.. ..-.+++..-|++.++|.|-.+..+..
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 887431 123467888899999999987766553
No 122
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00037 Score=84.63 Aligned_cols=202 Identities=14% Similarity=0.165 Sum_probs=111.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEE-eCCccCHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC-VSDDFDVKRLTKTI 266 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 266 (1367)
.+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+++........+.-.|.. +...+..=...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 458999998999988885432 234578999999999999999876432211111001110 00001100111111
Q ss_pred HHHhhhc----CCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEE-EcCchhH
Q 000660 267 LTSIVAS----QNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIV-TTRNQEV 337 (1367)
Q Consensus 267 l~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v 337 (1367)
...-... ........+++.+.+... ..+++-++|+|++..-+....+.|...+......+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 000111233433322222 234555889999977665667777777765445555554 4444444
Q ss_pred Hhh-hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChH-HHHHHH
Q 000660 338 AEI-MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPL-AAQTLG 394 (1367)
Q Consensus 338 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 394 (1367)
... ......+++.+++.++....+.+.+-. ...-..+.+..|++.++|..- |+..+-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 332 234567999999999988777765432 222345677889999999554 444443
No 123
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00036 Score=82.44 Aligned_cols=182 Identities=14% Similarity=0.168 Sum_probs=106.9
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccc---------------------cccc
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ---------------------DHFD 246 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~ 246 (1367)
.+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.++...... .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999986532 23567899999999999999987632111 0111
Q ss_pred eEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHH-HhCCCceEEEEEcCCCCCchhhhhhccccCCCCCC
Q 000660 247 LKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSK-QLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPG 325 (1367)
Q Consensus 247 ~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 325 (1367)
.+++......... .+.++.+.+.. ...+++-++|+|++...+....+.+...+......
T Consensus 92 -~~~i~g~~~~gid-------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 92 -VLEIDGASHRGIE-------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred -eEEeeccccCCHH-------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 1111111111111 11111111111 11256678999999665545566666666654456
Q ss_pred cEEEEEcCc-hhHHhh-hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCCh-HHHHHHH
Q 000660 326 SKIIVTTRN-QEVAEI-MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLP-LAAQTLG 394 (1367)
Q Consensus 326 s~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 394 (1367)
..+|++|.. ..+... ......++++++++++....+.+.+-. ......+.+..|++.++|.+ .|+..+-
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 666665533 333222 223457899999999988887766532 22234567788999999965 4444443
No 124
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=5.2e-07 Score=92.81 Aligned_cols=136 Identities=15% Similarity=0.235 Sum_probs=81.1
Q ss_pred CcceEEecCCCCcccchhHHHHHHHhhhhhcccccceEEecCCCccccCCcccCCCCCccEEEEccCCCccccC---CCC
Q 000660 868 SLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFP---EVA 944 (1367)
Q Consensus 868 ~L~~L~L~~~~~L~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~---~~~ 944 (1367)
.|++|++++ ..++. ...+.+...+.+|+.|.|.++.+...+...+..-.+|+.|+|+.|..++... -+.
T Consensus 186 Rlq~lDLS~-s~it~-------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITV-------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhHHhhcch-hheeH-------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH
Confidence 466666665 22321 1223333344677778888877766666667777788888888887665544 255
Q ss_pred CcccccEEEeccCCccccCccccccCCCCCccEEEEecCCCcccccccCCccccceeeeecCCCCccccccccc
Q 000660 945 LPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGI 1018 (1367)
Q Consensus 945 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~lp~~L~~L~l~~~~~L~~L~l~~n~ 1018 (1367)
.++.|..|+++-|......-......--++|+.|+++++..+-... .+.. | ...|++|..||++++.
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s--h~~t-L----~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS--HLST-L----VRRCPNLVHLDLSDSV 324 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh--HHHH-H----HHhCCceeeecccccc
Confidence 6788888888888765443222221223667777777775432111 1111 1 4577888887777654
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00063 Score=80.83 Aligned_cols=183 Identities=15% Similarity=0.171 Sum_probs=106.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccc---cc----------------ccceE
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV---QD----------------HFDLK 248 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~----------------~F~~~ 248 (1367)
.+++|.+.-++.+..++.... -.....++|+.|+||||+|+.++..... .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 358899999999999986532 2355678999999999999998753210 00 01111
Q ss_pred EEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcE
Q 000660 249 AWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSK 327 (1367)
Q Consensus 249 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (1367)
+++..+....+ .+.+.+.+.+... ..+++-++|+|++..-+....+.+...+........
T Consensus 91 ~eidaas~~gv-------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 91 IEIDAASNRGI-------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEeCccCCCH-------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 12211111111 1111222222111 135666999999976655566677666655444555
Q ss_pred EEE-EcCchhHHhh-hCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHHH
Q 000660 328 IIV-TTRNQEVAEI-MGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTLG 394 (1367)
Q Consensus 328 ilv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~ 394 (1367)
+|+ ||+...+... ......+.+.+++.++....+.+.+-. ......+.+..|++.++|.+-.+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 554 4444333322 223357899999999988877775532 222334667778889999765544433
No 126
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.81 E-value=8e-05 Score=84.81 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=77.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.++++.+...+.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||.++..++..++...+-
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999998643 4678899999999999999998654455788889999999888776553221
Q ss_pred HHhhhcCCCCCCCh-HHHHHHHHHHhC--CCceEEEEEcCCCCCchh-hhhhcccc
Q 000660 268 TSIVASQNVGDPSL-NSLQKELSKQLS--GKKFLLVLDDVWNRNYDD-WVQLRRPF 319 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~-~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~-~~~l~~~l 319 (1367)
.. .....-. ....+.+....+ ++++++|+|++...+.+. +..+...+
T Consensus 247 ----P~-~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 247 ----PN-GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred ----CC-CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 00 0000000 011222222222 478999999996655433 34444333
No 127
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00052 Score=81.34 Aligned_cols=178 Identities=14% Similarity=0.189 Sum_probs=110.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccc---c-----------------ccce
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ---D-----------------HFDL 247 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-----------------~F~~ 247 (1367)
.+++|-+.-++.+..++..+. -..+..++|+.|+||||+|+.++...--. + |++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 358999988999999886442 24566899999999999999887532100 0 111
Q ss_pred EEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCC
Q 000660 248 KAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGA 323 (1367)
Q Consensus 248 ~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 323 (1367)
.+.+..+.. ...+++.+.+... ..+++-++|+|++...+.+....++..+....
T Consensus 88 v~eldaas~----------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp 145 (535)
T PRK08451 88 IIEMDAASN----------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP 145 (535)
T ss_pred EEEeccccc----------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC
Confidence 111111111 1233333333221 11455689999998777677777777776655
Q ss_pred CCcEEEEEcCch-hHHhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 324 PGSKIIVTTRNQ-EVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 324 ~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
..+++|++|.+. .+...+ .....+++.+++.++....+.+.+-. ...-..+.+..|++.++|.+--+..+
T Consensus 146 ~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 146 SYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 667766666553 222111 22467899999999988888765533 22233567788999999988555444
No 128
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.80 E-value=0.00027 Score=80.83 Aligned_cols=148 Identities=16% Similarity=0.202 Sum_probs=85.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|.+...+.+..++.... -..++.++|++|+||||+|+.+++.. ... ...++.+. ... ...++.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccH-HHHHHHH
Confidence 468999999999999986432 34677789999999999999998742 211 23344443 111 1111211
Q ss_pred HHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCC-CchhhhhhccccCCCCCCcEEEEEcCchh-HHhhh-CCC
Q 000660 268 TSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNR-NYDDWVQLRRPFEVGAPGSKIIVTTRNQE-VAEIM-GTV 344 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~ 344 (1367)
....... .+.+.+-++|+||+... ..+....+...+.....++++|+||.... +...+ +..
T Consensus 89 ~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 01134558999999654 22233344444444456778888886532 11111 222
Q ss_pred CceeCCCCChHHHHHHHHh
Q 000660 345 PSYQLKKLSDNDCLAVFAQ 363 (1367)
Q Consensus 345 ~~~~l~~L~~~~~~~lf~~ 363 (1367)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4567777777777666543
No 129
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00055 Score=83.74 Aligned_cols=175 Identities=15% Similarity=0.186 Sum_probs=109.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccc---------------------ccccc
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV---------------------QDHFD 246 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~ 246 (1367)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+...... ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 358999999999999986542 2456789999999999999988753211 11232
Q ss_pred eEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCC
Q 000660 247 LKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVG 322 (1367)
Q Consensus 247 ~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 322 (1367)
. ..+..+... ..+++...+.+. ..+++=++|+|++..-+...++.+...+...
T Consensus 92 ~-~~ld~~~~~----------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 92 I-HELDAASNN----------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred e-EEecccccC----------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 1 122222111 122222222111 1234558899999777667788888777665
Q ss_pred CCCcEEEE-EcCchhHHhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHH
Q 000660 323 APGSKIIV-TTRNQEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 323 ~~gs~ilv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai 390 (1367)
..++.+|+ ||+...+...+ .....+++.++++++....+.+.+-. ......+.+..|++.++|-.--+
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 55666555 54544444332 33467999999999998888776533 22233456788999999866543
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00061 Score=83.31 Aligned_cols=196 Identities=13% Similarity=0.194 Sum_probs=109.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.++.......... .. ...+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CC----CCCCcccHHHHHHh
Confidence 358899999999999886542 134677999999999999999987432111000 00 01111111222222
Q ss_pred HHhhhc----CCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEE-EcCchhHH
Q 000660 268 TSIVAS----QNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIV-TTRNQEVA 338 (1367)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~ 338 (1367)
...... ........+.+.+.+... ..+++-++|+|++..-+...+..|...+........+|+ |+....+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 111100 000112233333333221 124555899999977666677778777765444455444 44433333
Q ss_pred hhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 339 EIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
..+ .....+++..++.++....+.+.+.. ......+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 23456888899998888777765533 11222456788999999977655443
No 131
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.74 E-value=0.00017 Score=75.77 Aligned_cols=181 Identities=19% Similarity=0.229 Sum_probs=114.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEE-EEeCCccCHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAW-TCVSDDFDVKRLTKTI 266 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~s~~~~~~~~~~~i 266 (1367)
.+++|.+..++-+.+.+... ...+...+|++|.|||+-|.+++...--.+.|.+++- .++|+.-... +.++
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 45889999999999888653 3678899999999999999988865433456665542 3444432221 0000
Q ss_pred HHHhhhcCCCCCCChHHHHHHHHHHh--CCCce-EEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hhHHhhh-
Q 000660 267 LTSIVASQNVGDPSLNSLQKELSKQL--SGKKF-LLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QEVAEIM- 341 (1367)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~- 341 (1367)
...+...+........ ..++| .+|||++.....+.|..++..+......++.|..+-. ..+...+
T Consensus 108 ----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 108 ----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 1111121111111000 12343 7889999888889999999888876666765554443 2222211
Q ss_pred CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCC
Q 000660 342 GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGL 386 (1367)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~ 386 (1367)
.-...|..++|.+++...-++..+-. ..+-..+..+.|++.++|-
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 22246889999999998888887754 2333456677888888873
No 132
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.73 E-value=0.00071 Score=72.76 Aligned_cols=193 Identities=16% Similarity=0.151 Sum_probs=115.7
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccc----cccceEEEEEeCCccCHHHHHHHHHHHhh
Q 000660 196 EKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----DHFDLKAWTCVSDDFDVKRLTKTILTSIV 271 (1367)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 271 (1367)
-++++.++|... ...+..-+.|||..|.|||++++.+....-.. ..--.++.|.....++...++..|+.+++
T Consensus 45 ~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 45 ALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 345566666543 34566779999999999999999998542111 11124677888889999999999999999
Q ss_pred hcCCCCCCChHHHHHHHHHHhCC-CceEEEEEcCCCC---Cchhhhhhcc---ccCCCCCCcEEEEEcCchhHHhhh---
Q 000660 272 ASQNVGDPSLNSLQKELSKQLSG-KKFLLVLDDVWNR---NYDDWVQLRR---PFEVGAPGSKIIVTTRNQEVAEIM--- 341 (1367)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~---~~~~~~~l~~---~l~~~~~gs~ilvTtR~~~v~~~~--- 341 (1367)
.... .......+.....+.++. +-=+||+|.+.+. +..+...+.. .+.+.-.=+-|.|-|+...-+-..
T Consensus 122 aP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 122 APYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred cccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 8765 344555555555555553 3338999999652 1112222222 232333445566666653222111
Q ss_pred --CCCCceeCCCCChH-HHHHHHHhhhcC------CcchHHHHHHHHHHhcCCChHHHHH
Q 000660 342 --GTVPSYQLKKLSDN-DCLAVFAQHSLG------SHKLLEEIGKKIVTKCDGLPLAAQT 392 (1367)
Q Consensus 342 --~~~~~~~l~~L~~~-~~~~lf~~~~~~------~~~~~~~~~~~i~~~~~g~PLai~~ 392 (1367)
+-..++.++.-..+ +...|+...... .+-...++++.|...++|+.=-+..
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 11245666666544 445555433211 2223568899999999997654443
No 133
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.69 E-value=0.00024 Score=82.60 Aligned_cols=160 Identities=14% Similarity=0.124 Sum_probs=88.4
Q ss_pred cCcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDV 259 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 259 (1367)
..++.|+++.++++.+.+...-. -+....+-|.++|++|+|||++|+++++.. ... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeeh----
Confidence 34789999999999887632100 012345668899999999999999999842 222 222221
Q ss_pred HHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCC-----------Cchhhhhhcccc---CC--CC
Q 000660 260 KRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNR-----------NYDDWVQLRRPF---EV--GA 323 (1367)
Q Consensus 260 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~~ 323 (1367)
..+ ..... ......+...+...-...+.+|++|++..- +...+..+...+ .. ..
T Consensus 199 ~~l----~~~~~------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SEL----VQKFI------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHH----hHhhc------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111 11110 011111222222222356789999999532 001111222211 11 12
Q ss_pred CCcEEEEEcCchhHHh-hh-C---CCCceeCCCCChHHHHHHHHhhhcC
Q 000660 324 PGSKIIVTTRNQEVAE-IM-G---TVPSYQLKKLSDNDCLAVFAQHSLG 367 (1367)
Q Consensus 324 ~gs~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~ 367 (1367)
.+..||.||...+... .+ . -...+.++..+.++-.++|+.+..+
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 3567777776643221 11 1 2356889999999999999877654
No 134
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.0012 Score=79.89 Aligned_cols=193 Identities=15% Similarity=0.118 Sum_probs=110.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|-+.-++.+..++..+. -...+.++|+.|+||||+|+.++...-....... ..+....+- +.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 468999999999999986542 2456789999999999999999874321110000 000000000 1110
Q ss_pred HHhhhc----CCCCCCChHHHHHHH---HH-HhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hhHH
Q 000660 268 TSIVAS----QNVGDPSLNSLQKEL---SK-QLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QEVA 338 (1367)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 338 (1367)
..-... ........+++.+.. .. -..+++-++|+|++..-+...++.+...+........+|.+|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 000000 000012233332222 11 12355668999999777666777787777655556666655543 3333
Q ss_pred hhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHH
Q 000660 339 EIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQT 392 (1367)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~ 392 (1367)
..+ .....+++.+++.++....+.+.+.. ..+-..+.+..|++.++|.+-.+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 222 23356889999999988888776533 2233456777789999997754443
No 135
>CHL00181 cbbX CbbX; Provisional
Probab=97.66 E-value=0.001 Score=73.49 Aligned_cols=135 Identities=12% Similarity=0.073 Sum_probs=72.8
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
...+.++|++|+||||+|+.++......+.-...-|+.++. .. +.....+.. .......+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~------~~~~~~~l~~a--- 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT------APKTKEVLKKA--- 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc------hHHHHHHHHHc---
Confidence 34578899999999999999976321111111122454441 12 222221111 11222223322
Q ss_pred CceEEEEEcCCCC---------CchhhhhhccccCCCCCCcEEEEEcCchhHHhhh--------CCCCceeCCCCChHHH
Q 000660 295 KKFLLVLDDVWNR---------NYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIM--------GTVPSYQLKKLSDNDC 357 (1367)
Q Consensus 295 k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~~~ 357 (1367)
..-+|++|++..- ..+....+...+.....+.+||+++....+.... .-...+.+++++.+|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2349999999531 1122333444444444556777777654443211 1234688999999999
Q ss_pred HHHHHhhhc
Q 000660 358 LAVFAQHSL 366 (1367)
Q Consensus 358 ~~lf~~~~~ 366 (1367)
.+++...+-
T Consensus 202 ~~I~~~~l~ 210 (287)
T CHL00181 202 LQIAKIMLE 210 (287)
T ss_pred HHHHHHHHH
Confidence 888877653
No 136
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.63 E-value=1.2e-05 Score=95.17 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=23.0
Q ss_pred cCCCCCccEEEEccCCCccccCC-CCCcccccEEEeccCCccc
Q 000660 920 SLSLSSLREIEIYQCSSLVSFPE-VALPSKLKTIHISSCDALK 961 (1367)
Q Consensus 920 ~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~l~~~~~~~ 961 (1367)
+..+.+|+.|++.+| .+..+.. +..+++|++|++++|.+..
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~ 132 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITK 132 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheecccccccc
Confidence 445566666666666 3333333 4556666666666666543
No 137
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.62 E-value=0.00028 Score=76.33 Aligned_cols=168 Identities=18% Similarity=0.191 Sum_probs=102.9
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTI 266 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (1367)
++.+.+|+.++..+..++.... ..-+..|.|+|..|.|||.+.+++++... ...+|+++-+.++.+.++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 5678999999999999986542 22356668999999999999999998542 236899999999999999999
Q ss_pred HHHhh-hcCCCCC-----CChHHHHHHHHH--HhC--CCceEEEEEcCCCCCchhhhhhc-cc---cCC-CCCCcEEEEE
Q 000660 267 LTSIV-ASQNVGD-----PSLNSLQKELSK--QLS--GKKFLLVLDDVWNRNYDDWVQLR-RP---FEV-GAPGSKIIVT 331 (1367)
Q Consensus 267 l~~l~-~~~~~~~-----~~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~~~l~-~~---l~~-~~~gs~ilvT 331 (1367)
+.+.. .+..... ....+....+.+ ... ++.++||||++..- .+.+... .. +.. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99985 2221111 112222333333 222 46899999999442 1211111 00 000 1112233444
Q ss_pred cCchhHH---hhhCCC--CceeCCCCChHHHHHHHHhh
Q 000660 332 TRNQEVA---EIMGTV--PSYQLKKLSDNDCLAVFAQH 364 (1367)
Q Consensus 332 tR~~~v~---~~~~~~--~~~~l~~L~~~~~~~lf~~~ 364 (1367)
+-...-. ..+|+. .++..+.-+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4332111 113433 34566788888888888654
No 138
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.0011 Score=81.16 Aligned_cols=196 Identities=13% Similarity=0.187 Sum_probs=107.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|.+.-++.|..++..+. -...+.++|+.|+||||+|+.++........... ..++.-...++|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 468999999999999886542 2356679999999999999998764211110000 0000000111110
Q ss_pred HHhhhc----CCCCCCChHH---HHHHHHHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEE-EcCchhHH
Q 000660 268 TSIVAS----QNVGDPSLNS---LQKELSKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIV-TTRNQEVA 338 (1367)
Q Consensus 268 ~~l~~~----~~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~ 338 (1367)
..-... ........++ +.+.+... ..+++-++|+|++..-+......|...+........+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 000000 0000111222 22222111 124455899999977666667777777765445555554 55544444
Q ss_pred hhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCCh-HHHHHHHh
Q 000660 339 EIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLP-LAAQTLGG 395 (1367)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 395 (1367)
..+ .....+++++++.++....+...+-. ...-..+....|++.++|.. .|+..+-.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 322 23457889999999888777665432 22233466778888998855 45544433
No 139
>PRK06620 hypothetical protein; Validated
Probab=97.59 E-value=0.0015 Score=68.79 Aligned_cols=134 Identities=16% Similarity=0.106 Sum_probs=77.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK 295 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1367)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . + +..+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~----------------~------~-------~~~~-~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF----------------N------E-------EILE-K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh----------------c------h-------hHHh-c
Confidence 6789999999999999999887432 1 1111 0000 0 0 0111 2
Q ss_pred ceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchh-------HHhhhCCCCceeCCCCChHHHHHHHHhhhcC-
Q 000660 296 KFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQE-------VAEIMGTVPSYQLKKLSDNDCLAVFAQHSLG- 367 (1367)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~- 367 (1367)
.-++++||+........-.+...+. ..|..||+|++... ....+....+++++++++++-..++.+.+..
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3478899995321111111111111 34668999988532 2233344558999999999988888776542
Q ss_pred CcchHHHHHHHHHHhcCCChHHH
Q 000660 368 SHKLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 368 ~~~~~~~~~~~i~~~~~g~PLai 390 (1367)
.-.--+++..-|++.+.|---.+
T Consensus 164 ~l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 SVTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCCCCHHHHHHHHHHccCCHHHH
Confidence 22233566667777776644433
No 140
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.59 E-value=0.00046 Score=75.99 Aligned_cols=161 Identities=13% Similarity=0.116 Sum_probs=80.5
Q ss_pred cccccchhHHHHHHHHhc---------CCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 000660 189 KVYGRETEKKDVVELLLR---------DDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDV 259 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 259 (1367)
.++|.+..+++|.+.... .+....+...-+.++|++|+||||+|+.+++...-.+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478888777666543211 1111123456678999999999999999986321001111112333322
Q ss_pred HHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCC--------chhhhhhccccCCCCCCcEEEEE
Q 000660 260 KRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRN--------YDDWVQLRRPFEVGAPGSKIIVT 331 (1367)
Q Consensus 260 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvT 331 (1367)
.++. .... ..........+.+. ..-+|++|++..-. .+..+.+...+........+|++
T Consensus 83 ~~l~----~~~~------g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 83 ADLV----GEYI------GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred HHhh----hhhc------cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 1111 1110 01112222223222 23488999995421 12233344444443333455666
Q ss_pred cCchhHHh------hh-C-CCCceeCCCCChHHHHHHHHhhhc
Q 000660 332 TRNQEVAE------IM-G-TVPSYQLKKLSDNDCLAVFAQHSL 366 (1367)
Q Consensus 332 tR~~~v~~------~~-~-~~~~~~l~~L~~~~~~~lf~~~~~ 366 (1367)
+...+... .+ . -...+.+++++.++-.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 55433211 11 1 123578899999998888876653
No 141
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.0015 Score=79.33 Aligned_cols=192 Identities=15% Similarity=0.173 Sum_probs=106.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|.+..++.+.+++.... -...+.++|+.|+||||+|+.+....-....-+ ...++.-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999986542 246677899999999999999875321111000 00000001111111
Q ss_pred HHhhhc----CCCCCCChHHH---HHHHHHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEE-EcCchhHH
Q 000660 268 TSIVAS----QNVGDPSLNSL---QKELSKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIV-TTRNQEVA 338 (1367)
Q Consensus 268 ~~l~~~----~~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~ 338 (1367)
...... ........+++ .+.+... ..+++-++|+|++..-+...+..+...+........+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 100000 00001122222 2222211 134566889999977666667777766654444444444 54444333
Q ss_pred hhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHH
Q 000660 339 EIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQ 391 (1367)
Q Consensus 339 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~ 391 (1367)
..+ .....+++.+++.++....+...+-. ......+....|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 222 23456888999999988888776533 222234667788888888765443
No 142
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.58 E-value=1.6e-05 Score=94.26 Aligned_cols=107 Identities=24% Similarity=0.110 Sum_probs=67.2
Q ss_pred hccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCc
Q 000660 1088 LDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQ 1167 (1367)
Q Consensus 1088 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~ 1167 (1367)
+..+++|+.|++.+|.+.+.. ..+..+++|++|++++|.+....+ +..++.|+.|++++|.+... ..+..+++|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhh
Confidence 556677777777777777632 225667777777777776554432 34445577777777775432 3455577777
Q ss_pred EEEccCCCCCCCCcC-CCCCCCccEEEecCCcc
Q 000660 1168 ELTIGRGVELPSLEE-DGLPTNLHSLDIRGNME 1199 (1367)
Q Consensus 1168 ~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~~ 1199 (1367)
.+++++|.....-+. ...+.+|+.+++.+|..
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 777777753332221 35667777777777743
No 143
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.57 E-value=0.0013 Score=77.82 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=91.1
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCccccccc--ceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--DLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
...+.|+|..|+|||+||+++++.. .... ..+++++ ..++..++...+... ..+.. .+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~------~~~~~~~~~~~~~~~------~~~~~----~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVS------SEKFTNDFVNALRNN------KMEEF----KEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEE------HHHHHHHHHHHHHcC------CHHHH----HHHH
Confidence 4568899999999999999999843 2222 2345554 334455555554321 22222 2333
Q ss_pred CCCceEEEEEcCCCCCchh-h-hhhccccCC-CCCCcEEEEEcCch-h--------HHhhhCCCCceeCCCCChHHHHHH
Q 000660 293 SGKKFLLVLDDVWNRNYDD-W-VQLRRPFEV-GAPGSKIIVTTRNQ-E--------VAEIMGTVPSYQLKKLSDNDCLAV 360 (1367)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~ilvTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~l 360 (1367)
++ .-+||+||+......+ + +.+...+.. ...|..||+|+... . +...+.....+.+++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 32 2388999996432111 1 223222211 12345678877642 1 112222334688999999999999
Q ss_pred HHhhhcC-CcchHHHHHHHHHHhcCCChHHHH
Q 000660 361 FAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQ 391 (1367)
Q Consensus 361 f~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~ 391 (1367)
+.+.+-. ...--+++..-|++.+.|..-.+.
T Consensus 277 l~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 9888754 222335677778888887665433
No 144
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.53 E-value=0.001 Score=73.66 Aligned_cols=132 Identities=12% Similarity=0.122 Sum_probs=71.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCc
Q 000660 217 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKK 296 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (1367)
-+.++|++|+||||+|+.++............-|+.++. . +++..+.+. ........+.+. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~------~~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGH------TAPKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhccc------chHHHHHHHHHc---cC
Confidence 577999999999999987765321111111123444442 1 122222111 112222233332 33
Q ss_pred eEEEEEcCCCC---------CchhhhhhccccCCCCCCcEEEEEcCchhHHhhhC--------CCCceeCCCCChHHHHH
Q 000660 297 FLLVLDDVWNR---------NYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMG--------TVPSYQLKKLSDNDCLA 359 (1367)
Q Consensus 297 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~ 359 (1367)
-+|++|++..- ..+.+..+...+.....+.+||+++.......... -...+++++++.+|-.+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58899999521 11223445555554455667777776543322211 13468899999999999
Q ss_pred HHHhhh
Q 000660 360 VFAQHS 365 (1367)
Q Consensus 360 lf~~~~ 365 (1367)
++...+
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 887765
No 145
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.53 E-value=2e-06 Score=99.09 Aligned_cols=120 Identities=23% Similarity=0.210 Sum_probs=90.0
Q ss_pred CchhhHHhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCC-CCCCccCcceEEEeccCCCCccc
Q 000660 1079 SKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPE-GGLPCAKLIKFNISWCKGLEALP 1157 (1367)
Q Consensus 1079 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~ls~n~~~~~~p 1157 (1367)
+.+..+..++.-++.|+.|||++|++...- .+..|+.|++|||++|.+. .+|. ....| +|+.|.+++|.+...
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL-- 247 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL-- 247 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--
Confidence 344556677888899999999999998633 6788999999999999755 3443 23334 499999999986543
Q ss_pred ccCCCCCCCcEEEccCCCCC--CCCcCCCCCCCccEEEecCCcchhhhh
Q 000660 1158 KGLHNLTSLQELTIGRGVEL--PSLEEDGLPTNLHSLDIRGNMEIWKSM 1204 (1367)
Q Consensus 1158 ~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~L~~L~L~~n~~~~~~~ 1204 (1367)
..+.+|.+|+.||+++|-.. ..+..+..+..|+.|.|.||+.-...+
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 35788999999999999532 223344667889999999997655443
No 146
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=2.6e-05 Score=80.70 Aligned_cols=87 Identities=13% Similarity=0.027 Sum_probs=62.4
Q ss_pred ccCCccceeeecccCCcc--cCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCC-cccccCCCCCC
Q 000660 1089 DNNTSLEIIRIDFCKNLK--ILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLE-ALPKGLHNLTS 1165 (1367)
Q Consensus 1089 ~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~-~~p~~~~~l~~ 1165 (1367)
..++.++.+||.+|.++. .+...+.++|.|++|+|+.|++...|...-.+..+|+.|-|.+..+.= .....+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 356788999999999875 344556789999999999998776554333566788998888766532 12234566788
Q ss_pred CcEEEccCCC
Q 000660 1166 LQELTIGRGV 1175 (1367)
Q Consensus 1166 L~~L~l~~n~ 1175 (1367)
++.|.++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 8888888773
No 147
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0028 Score=70.97 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=112.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccc-------------ccccceEEEEEeC
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-------------QDHFDLKAWTCVS 254 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~~s 254 (1367)
.+++|.+..++.+.+.+..+. -.....++|+.|+||+++|..+++..-- ........|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 358999999999999986542 2468889999999999999887653211 1112223444321
Q ss_pred CccCHHHHHHHHHHHhhhcC-CCCCCChHHHHHHHHHHh-----CCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEE
Q 000660 255 DDFDVKRLTKTILTSIVASQ-NVGDPSLNSLQKELSKQL-----SGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKI 328 (1367)
Q Consensus 255 ~~~~~~~~~~~il~~l~~~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (1367)
...+-..+-..-++..+... ....-.++++. .+.+.+ .+++=++|+|++...+......+...+.......-|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 00000000011111111000 00112233322 233333 356669999999777666777777776544433344
Q ss_pred EEEcCchhHHhhh-CCCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHHHHH
Q 000660 329 IVTTRNQEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLG 394 (1367)
Q Consensus 329 lvTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 394 (1367)
++|++...+...+ +-...+++.++++++..+.+.+..... ........++..++|.|..+....
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--ILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--cchhHHHHHHHHcCCCHHHHHHHH
Confidence 4454444443322 334679999999999999998764221 111123578999999997665533
No 148
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.45 E-value=0.0009 Score=84.95 Aligned_cols=155 Identities=17% Similarity=0.254 Sum_probs=84.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCc---cccccc-ceEEEEEeCCccCHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK---QVQDHF-DLKAWTCVSDDFDVKRLT 263 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~~s~~~~~~~~~ 263 (1367)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.++... .+...+ ...+|.. +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh
Confidence 368999999999999986542 2345699999999999999998742 111111 3344421 111111
Q ss_pred HHHHHHhhhcCCCCCCChHH-HHHHHHHHhCCCceEEEEEcCCCCC---------chhhhhhccccCCCCCC-cEEEEEc
Q 000660 264 KTILTSIVASQNVGDPSLNS-LQKELSKQLSGKKFLLVLDDVWNRN---------YDDWVQLRRPFEVGAPG-SKIIVTT 332 (1367)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~g-s~ilvTt 332 (1367)
.. .. -..+.++ +...+.+.-+.++.+|++|++..-. .+.-+.+...+. .| -++|-+|
T Consensus 251 ----a~---~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaT 318 (731)
T TIGR02639 251 ----AG---TK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGST 318 (731)
T ss_pred ----hh---cc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEec
Confidence 00 00 0112222 2222222223467899999985221 111222332232 23 3455544
Q ss_pred CchhHH------hhh-CCCCceeCCCCChHHHHHHHHhhh
Q 000660 333 RNQEVA------EIM-GTVPSYQLKKLSDNDCLAVFAQHS 365 (1367)
Q Consensus 333 R~~~v~------~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1367)
...+.. ..+ .-...++++.++.++..+++....
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 432211 111 123468999999999999988654
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.44 E-value=0.00089 Score=85.41 Aligned_cols=176 Identities=15% Similarity=0.177 Sum_probs=92.8
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcc---ccc-ccceEEE-EEeCCccCHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ---VQD-HFDLKAW-TCVSDDFDVKRL 262 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~-~F~~~~w-v~~s~~~~~~~~ 262 (1367)
..++||+.+++++++.|.... ..-+.++|.+|+||||+|+.++.... +.. -....+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 468999999999999986542 23456999999999999999987421 111 1123333 22221
Q ss_pred HHHHHHHhhhcCCCCCCCh-HHHHHHHHHHh-CCCceEEEEEcCCCCC-------chhhhh-hccccCCCCCCcEEEEEc
Q 000660 263 TKTILTSIVASQNVGDPSL-NSLQKELSKQL-SGKKFLLVLDDVWNRN-------YDDWVQ-LRRPFEVGAPGSKIIVTT 332 (1367)
Q Consensus 263 ~~~il~~l~~~~~~~~~~~-~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~ilvTt 332 (1367)
+..... ..... +.+...+.+.- .+++.+|++|++..-. ..+-.. +...+.. ..-++|-||
T Consensus 254 -------l~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaT 323 (852)
T TIGR03345 254 -------LQAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAAT 323 (852)
T ss_pred -------hhcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEec
Confidence 000000 00111 12222222221 2468999999984421 111111 2222221 234566666
Q ss_pred CchhHHhh-------hCCCCceeCCCCChHHHHHHHHhhhcC-----CcchHHHHHHHHHHhcCCC
Q 000660 333 RNQEVAEI-------MGTVPSYQLKKLSDNDCLAVFAQHSLG-----SHKLLEEIGKKIVTKCDGL 386 (1367)
Q Consensus 333 R~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~~~-----~~~~~~~~~~~i~~~~~g~ 386 (1367)
...+.... ..-...+.+++++.++..+++....-. ...-..+....+++.+.++
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 54322111 122357999999999999997544321 1111234445555555543
No 150
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.44 E-value=0.0019 Score=77.27 Aligned_cols=158 Identities=14% Similarity=0.179 Sum_probs=93.3
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCccccccc--ceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--DLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
..-+.|+|..|+|||+||+++++.. ...+ ..+++++. .++..++...+.. ...+ .+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~v~yi~~------~~~~~~~~~~~~~------~~~~----~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI--LEKNPNAKVVYVTS------EKFTNDFVNALRN------NTME----EFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEEEH------HHHHHHHHHHHHc------CcHH----HHHHHH
Confidence 4568899999999999999999843 3332 22445543 3344445554431 1122 233333
Q ss_pred CCCceEEEEEcCCCCCchh--hhhhccccCC-CCCCcEEEEEcCchh---------HHhhhCCCCceeCCCCChHHHHHH
Q 000660 293 SGKKFLLVLDDVWNRNYDD--WVQLRRPFEV-GAPGSKIIVTTRNQE---------VAEIMGTVPSYQLKKLSDNDCLAV 360 (1367)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 360 (1367)
+ +.-+||+||+....... .+.+...+.. ...|..||+|+.... +...+.....+++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 34489999995432111 1223222211 123456788776531 222333445789999999999999
Q ss_pred HHhhhcC-CcchHHHHHHHHHHhcCCChHHHH
Q 000660 361 FAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQ 391 (1367)
Q Consensus 361 f~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~ 391 (1367)
+.+.+-. ...--+++..-|++.+.|..-.+.
T Consensus 289 l~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGIDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHH
Confidence 9988754 223345778888998888766443
No 151
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.43 E-value=0.0028 Score=74.66 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=85.3
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
..-+.|+|+.|+|||+||+++++... ..-..+++++ ...+...+...+... . ...+++.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~~------~----~~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRSG------E----MQRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhcc------h----HHHHHHHcc-
Confidence 45688999999999999999998432 1122344543 234445555554321 1 122333333
Q ss_pred CceEEEEEcCCCCCchhh--hhhccccCC-CCCCcEEEEEcCch---------hHHhhhCCCCceeCCCCChHHHHHHHH
Q 000660 295 KKFLLVLDDVWNRNYDDW--VQLRRPFEV-GAPGSKIIVTTRNQ---------EVAEIMGTVPSYQLKKLSDNDCLAVFA 362 (1367)
Q Consensus 295 k~~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 362 (1367)
+.-++++||+.......| +.+...+.. ...|..||+||... .+...+.....+.+.+++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 334888899855322111 222222211 12355788888542 122223334678899999999999998
Q ss_pred hhhcCC-cchHHHHHHHHHHhcCC
Q 000660 363 QHSLGS-HKLLEEIGKKIVTKCDG 385 (1367)
Q Consensus 363 ~~~~~~-~~~~~~~~~~i~~~~~g 385 (1367)
+++-.. ..--+++..-|++.+.|
T Consensus 282 ~k~~~~~~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 282 RKAEALSIRIEETALDFLIEALSS 305 (445)
T ss_pred HHHHHcCCCCCHHHHHHHHHhcCC
Confidence 876431 12224555556666654
No 152
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.42 E-value=0.0013 Score=77.68 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=92.8
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccc-eEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFD-LKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLS 293 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 293 (1367)
..-+.|+|.+|+|||+||+++++... +.+.. .++|++. .++..++...+... ..+. +++..+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHHH
Confidence 44589999999999999999998432 22222 3456543 45566666655321 1222 233333
Q ss_pred CCceEEEEEcCCCCC-chhh-hhhccccCC-CCCCcEEEEEcC-chhH--------HhhhCCCCceeCCCCChHHHHHHH
Q 000660 294 GKKFLLVLDDVWNRN-YDDW-VQLRRPFEV-GAPGSKIIVTTR-NQEV--------AEIMGTVPSYQLKKLSDNDCLAVF 361 (1367)
Q Consensus 294 ~k~~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~ilvTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf 361 (1367)
.+.-+||+||+.... ...+ +.+...+.. ...|..||+||. ...- ...+.....+.+++.+.+.-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345589999996421 1111 223222211 123457888875 3221 122233457889999999999999
Q ss_pred HhhhcC-CcchHHHHHHHHHHhcCCChHHH
Q 000660 362 AQHSLG-SHKLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 362 ~~~~~~-~~~~~~~~~~~i~~~~~g~PLai 390 (1367)
.+.+.. ...--.++..-|++.+.|.--.+
T Consensus 273 ~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHGELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCCCCCHHHHHHHHhccccCHHHH
Confidence 888743 22233567788888887754443
No 153
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.42 E-value=1.8e-06 Score=99.39 Aligned_cols=125 Identities=18% Similarity=0.109 Sum_probs=91.0
Q ss_pred ccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCcEEEcc
Q 000660 1093 SLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIG 1172 (1367)
Q Consensus 1093 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~ 1172 (1367)
.|...+.++|.+.- +..++.-++.|+.|+|++|++...- .+..|+.|++|||++|.+....--....+. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 57788888888775 5567788899999999999876543 677889999999999995543322333444 9999999
Q ss_pred CCCCCCCCcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCcccEEEecCC
Q 000660 1173 RGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISEC 1225 (1367)
Q Consensus 1173 ~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 1225 (1367)
+| .+..+-...++.+|+.||+++|.+....-..+ +..+..|+.|.+.+|
T Consensus 241 nN-~l~tL~gie~LksL~~LDlsyNll~~hseL~p---LwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 241 NN-ALTTLRGIENLKSLYGLDLSYNLLSEHSELEP---LWSLSSLIVLWLEGN 289 (1096)
T ss_pred cc-HHHhhhhHHhhhhhhccchhHhhhhcchhhhH---HHHHHHHHHHhhcCC
Confidence 98 45556666788999999999995443332221 124567777777776
No 154
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0031 Score=71.05 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=66.4
Q ss_pred CCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCch-hHHhh-hCCCCceeCCCCChHHHHHHHHhhhcCCcch
Q 000660 294 GKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQ-EVAEI-MGTVPSYQLKKLSDNDCLAVFAQHSLGSHKL 371 (1367)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 371 (1367)
+++=++|+|++...+......+...+.....++.+|+||.+. .+... .+-...+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---~ 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---S 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc---C
Confidence 344456779998877777888877776655667777777664 33322 223467899999999999888765311 1
Q ss_pred HHHHHHHHHHhcCCChHHHHHH
Q 000660 372 LEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 372 ~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
..+.+..++..++|.|..+..+
T Consensus 182 ~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ChHHHHHHHHHcCCCHHHHHHH
Confidence 2344567789999999866554
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.35 E-value=0.0011 Score=85.32 Aligned_cols=156 Identities=21% Similarity=0.218 Sum_probs=84.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcc---ccccc-ceEEEEEeCCccCHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ---VQDHF-DLKAWTCVSDDFDVKRLT 263 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~~~ 263 (1367)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999996542 23456999999999999999987421 11111 244552 1 221111
Q ss_pred HHHHHHhhhcCCCCCCChH-HHHHHHHHHhCCCceEEEEEcCCCCC-------chhhhhhccccCCCCCCcEEEEEcCch
Q 000660 264 KTILTSIVASQNVGDPSLN-SLQKELSKQLSGKKFLLVLDDVWNRN-------YDDWVQLRRPFEVGAPGSKIIVTTRNQ 335 (1367)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~-~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTtR~~ 335 (1367)
.+... ..+.+ .+...+.+.-+.++.+|++|++..-. ..+...+..+.... ..-++|.+|...
T Consensus 248 -------ag~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ 317 (821)
T CHL00095 248 -------AGTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLD 317 (821)
T ss_pred -------ccCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHH
Confidence 11111 11122 22333333333578999999994210 00111222221111 124566666554
Q ss_pred hHHhh-------hCCCCceeCCCCChHHHHHHHHhh
Q 000660 336 EVAEI-------MGTVPSYQLKKLSDNDCLAVFAQH 364 (1367)
Q Consensus 336 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 364 (1367)
+.... ......+.++..+.++...++...
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43221 123356788888999988887653
No 156
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.31 E-value=0.00041 Score=67.65 Aligned_cols=69 Identities=23% Similarity=0.135 Sum_probs=40.4
Q ss_pred EEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC-Cc
Q 000660 218 IPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG-KK 296 (1367)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~-k~ 296 (1367)
|.|+|++|+||||+|+.+++... .+ .+.++.+.-.+ . ........+...+.+.-+. ++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--~~---~~~i~~~~~~~--------------~--~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--FP---FIEIDGSELIS--------------S--YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--SE---EEEEETTHHHT--------------S--STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--cc---ccccccccccc--------------c--cccccccccccccccccccccc
Confidence 56899999999999999998532 11 34444332110 0 0112223333344443333 38
Q ss_pred eEEEEEcCCCC
Q 000660 297 FLLVLDDVWNR 307 (1367)
Q Consensus 297 ~LlVlDdv~~~ 307 (1367)
.+|++||+..-
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999554
No 157
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.30 E-value=0.0051 Score=64.09 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=73.5
Q ss_pred cccCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 000660 185 VDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
+.-..++|.+.+++.|++--..-- .+....-+.+||..|+|||++++++.+...-++ .+ -|.+.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHH--------
Confidence 344679999999988876332110 112345677899999999999999987422221 11 1222211
Q ss_pred HHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCC-CchhhhhhccccCCC---CC-CcEEEEEcCchhH
Q 000660 265 TILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNR-NYDDWVQLRRPFEVG---AP-GSKIIVTTRNQEV 337 (1367)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~-gs~ilvTtR~~~v 337 (1367)
+..++..+.+.++. +..||+|.+||+.=+ ....+..++..+..+ .+ ...|.+||-.++.
T Consensus 90 ------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 ------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 23444455555553 467999999998432 334566777666432 22 3344445544443
No 158
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.30 E-value=0.0062 Score=72.85 Aligned_cols=158 Identities=12% Similarity=0.122 Sum_probs=90.7
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
...+.|+|..|+|||.|++++++.......-..+++++ ..++..++...+.. ...+ .+++.+++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~------~~~~----~f~~~y~~ 377 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRD------GKGD----SFRRRYRE 377 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHh------ccHH----HHHHHhhc
Confidence 34589999999999999999998432111112344554 34455555544421 1122 23333332
Q ss_pred CceEEEEEcCCCCCc-hhhhh-hccccCC-CCCCcEEEEEcCch---------hHHhhhCCCCceeCCCCChHHHHHHHH
Q 000660 295 KKFLLVLDDVWNRNY-DDWVQ-LRRPFEV-GAPGSKIIVTTRNQ---------EVAEIMGTVPSYQLKKLSDNDCLAVFA 362 (1367)
Q Consensus 295 k~~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 362 (1367)
-=+|||||+..... ..|.. +...+.. ...|..|||||+.. .+...+...-++.++..+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 24788999965422 22222 2222211 12356688888752 233334455678999999999999998
Q ss_pred hhhcC-CcchHHHHHHHHHHhcCCChHH
Q 000660 363 QHSLG-SHKLLEEIGKKIVTKCDGLPLA 389 (1367)
Q Consensus 363 ~~~~~-~~~~~~~~~~~i~~~~~g~PLa 389 (1367)
+++.. .-..-+++..-|++.+.+..-.
T Consensus 457 kka~~r~l~l~~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 457 KKAVQEQLNAPPEVLEFIASRISRNIRE 484 (617)
T ss_pred HHHHhcCCCCCHHHHHHHHHhccCCHHH
Confidence 88754 2222346666677776655433
No 159
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.024 Score=63.22 Aligned_cols=166 Identities=13% Similarity=0.103 Sum_probs=100.2
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccc-------------------cccceEEEEEeCCc
Q 000660 196 EKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-------------------DHFDLKAWTCVSDD 256 (1367)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~~s~~ 256 (1367)
..+++.+.+..+. -...+-++|+.|+||+++|+.++...--. .|-| ..|+.-..
T Consensus 11 ~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~- 83 (319)
T PRK06090 11 VWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEK- 83 (319)
T ss_pred HHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCc-
Confidence 3556666664432 24678899999999999999986421110 1111 11221100
Q ss_pred cCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh-----CCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEE
Q 000660 257 FDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL-----SGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVT 331 (1367)
Q Consensus 257 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT 331 (1367)
....-.++++.+ +.+.+ .+++=++|+|++...+......+...+.....++.+|.+
T Consensus 84 ------------------~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~ 144 (319)
T PRK06090 84 ------------------EGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLV 144 (319)
T ss_pred ------------------CCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 001122333322 22222 234558899999887777788888777665666766666
Q ss_pred cCc-hhHHhhh-CCCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHHHHH
Q 000660 332 TRN-QEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLG 394 (1367)
Q Consensus 332 tR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 394 (1367)
|.+ ..+...+ +-...+.+.+++++++.+.+..... + .+..+++.++|.|+.+..+.
T Consensus 145 t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~---~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 145 THNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI---T----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred ECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC---c----hHHHHHHHcCCCHHHHHHHh
Confidence 555 3443333 3346789999999999988876421 1 23567899999999876553
No 160
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.012 Score=65.58 Aligned_cols=96 Identities=15% Similarity=0.191 Sum_probs=65.3
Q ss_pred CCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hhHHhhh-CCCCceeCCCCChHHHHHHHHhhhcCCcch
Q 000660 294 GKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLGSHKL 371 (1367)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 371 (1367)
+++=++|+|++...+...-..+...+..-..++.+|++|.+ ..+...+ +-...+.+.+++.+++.+.+.... ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~--~~-- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG--VS-- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC--CC--
Confidence 45669999999776666666676666655567767666664 3333222 234678899999999988887542 11
Q ss_pred HHHHHHHHHHhcCCChHHHHHHH
Q 000660 372 LEEIGKKIVTKCDGLPLAAQTLG 394 (1367)
Q Consensus 372 ~~~~~~~i~~~~~g~PLai~~~~ 394 (1367)
++.+..++..++|.|+.+..+.
T Consensus 188 -~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 -ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -hHHHHHHHHHcCCCHHHHHHHh
Confidence 2336678999999999776544
No 161
>PRK10536 hypothetical protein; Provisional
Probab=97.15 E-value=0.0035 Score=66.15 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=77.5
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEE--e--CCc-----cC
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC--V--SDD-----FD 258 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~--~--s~~-----~~ 258 (1367)
..+.+|......+..++.+. .++.+.|++|+|||+||.++..+.-..+.|+..+-+. + .+. -+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 44778888899999988532 4889999999999999999876432234454433321 1 110 01
Q ss_pred HH----HHHHHHHHHhhhcCCCCCCChHHHHH--------HHHHHhCCCce---EEEEEcCCCCCchhhhhhccccCCCC
Q 000660 259 VK----RLTKTILTSIVASQNVGDPSLNSLQK--------ELSKQLSGKKF---LLVLDDVWNRNYDDWVQLRRPFEVGA 323 (1367)
Q Consensus 259 ~~----~~~~~il~~l~~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~l~~~~ 323 (1367)
.. ..++-+...+..-. .....+.+.. .--.+++++.+ +||+|.+.+.+......+...+ +
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~--~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g 201 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL--GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---G 201 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---C
Confidence 11 12222222222110 0011111100 01135667655 9999999887665555555443 6
Q ss_pred CCcEEEEEcCchh
Q 000660 324 PGSKIIVTTRNQE 336 (1367)
Q Consensus 324 ~gs~ilvTtR~~~ 336 (1367)
.+|+||+|--...
T Consensus 202 ~~sk~v~~GD~~Q 214 (262)
T PRK10536 202 ENVTVIVNGDITQ 214 (262)
T ss_pred CCCEEEEeCChhh
Confidence 7899999876543
No 162
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.14 E-value=0.0023 Score=74.08 Aligned_cols=158 Identities=12% Similarity=0.121 Sum_probs=86.7
Q ss_pred cCcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDV 259 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 259 (1367)
-.++.|.+..+++|.+.+...-. -+-...+-+.++|++|+|||++|+++++.. ...| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~------ 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVG------ 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEeh------
Confidence 34688999888888776531100 012345678899999999999999999842 2223 12211
Q ss_pred HHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCC----------chh----hhhhccccCC--CC
Q 000660 260 KRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRN----------YDD----WVQLRRPFEV--GA 323 (1367)
Q Consensus 260 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~ 323 (1367)
..+ ..... ......+.+.+.......+.+|++|++.... ... +..+...+.. ..
T Consensus 213 s~l----~~k~~------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 SEF----VQKYL------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HHH----HHHhc------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111 11110 0111222333333345678999999974310 001 1122222211 22
Q ss_pred CCcEEEEEcCchhHH-hh-hC---CCCceeCCCCChHHHHHHHHhhh
Q 000660 324 PGSKIIVTTRNQEVA-EI-MG---TVPSYQLKKLSDNDCLAVFAQHS 365 (1367)
Q Consensus 324 ~gs~ilvTtR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~ 365 (1367)
.+..||+||...+.. .. .. -...++++..+.++..++|..+.
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 456788888764432 21 11 23568888888888888887654
No 163
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0097 Score=67.67 Aligned_cols=164 Identities=10% Similarity=0.072 Sum_probs=90.1
Q ss_pred cccc-cchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 189 KVYG-RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 189 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.++| -+.-++.+.+.+..+. -.....++|+.|+||||+|+.+.+..--....... .+... ...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHh
Confidence 3566 5666777777775432 24667899999999999999886532111100000 00000 0000000
Q ss_pred HHhhh-----cCCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCch-hH
Q 000660 268 TSIVA-----SQNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQ-EV 337 (1367)
Q Consensus 268 ~~l~~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v 337 (1367)
..-.. .........+++.+.+... ..+++=++|+|++...+......+...+.....++.+|.+|.+. .+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 0000112233333322211 22445579999997776667777887777666677777777653 33
Q ss_pred Hhhh-CCCCceeCCCCChHHHHHHHHhh
Q 000660 338 AEIM-GTVPSYQLKKLSDNDCLAVFAQH 364 (1367)
Q Consensus 338 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 364 (1367)
...+ .-...+++.++++++..+.+.+.
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3222 23467999999999998888754
No 164
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.12 E-value=0.0027 Score=73.93 Aligned_cols=159 Identities=15% Similarity=0.153 Sum_probs=87.4
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVK 260 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (1367)
.++.|.+.+++++.+.+.-.-. -+-...+-+.++|++|+|||++|+++++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 4578999999988887642100 01123456789999999999999999984 33333 2222111
Q ss_pred HHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCC--------c--hh----hhhhccccCC--CCC
Q 000660 261 RLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRN--------Y--DD----WVQLRRPFEV--GAP 324 (1367)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~--~~----~~~l~~~l~~--~~~ 324 (1367)
+ ..... ......+...+.....+.+.+|+||++.... . .. ...+...+.. ...
T Consensus 253 -L----~~k~~------Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 -L----IQKYL------GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred -h----hhhhc------chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 1 11110 0111122223333334677899999973210 0 00 1111111111 133
Q ss_pred CcEEEEEcCchhHHhh-h-C---CCCceeCCCCChHHHHHHHHhhhcC
Q 000660 325 GSKIIVTTRNQEVAEI-M-G---TVPSYQLKKLSDNDCLAVFAQHSLG 367 (1367)
Q Consensus 325 gs~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~~ 367 (1367)
+.+||+||...+..+. + . -...+++...+.++..++|..+...
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 5678888876443322 2 1 2356889999999999999877543
No 165
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.11 E-value=0.015 Score=73.55 Aligned_cols=166 Identities=16% Similarity=0.209 Sum_probs=87.3
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTI 266 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (1367)
+.+.+|.++-+++|+++|......+..+..++.++|++|+||||+|+.++.. ....|- -+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch
Confidence 4568999999999998886321112234568999999999999999999973 222332 13333333332211100
Q ss_pred HHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchh----hhhhccccCC---------------CCCCcE
Q 000660 267 LTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDD----WVQLRRPFEV---------------GAPGSK 327 (1367)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~---------------~~~gs~ 327 (1367)
.. . .......+...+... ....-+++||.+....... ...+...+.. .-...-
T Consensus 396 -~~-----~-~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 -RT-----Y-IGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred -hc-----c-CCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 00 0 001112233333332 2234478899985443211 1222222211 113344
Q ss_pred EEEEcCchhHHhhh-CCCCceeCCCCChHHHHHHHHhhh
Q 000660 328 IIVTTRNQEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHS 365 (1367)
Q Consensus 328 ilvTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1367)
+|.|+....+...+ +-...+++.++++++-.++.+++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 45566544332221 233578888998888877776654
No 166
>PRK08116 hypothetical protein; Validated
Probab=97.11 E-value=0.0014 Score=71.81 Aligned_cols=104 Identities=23% Similarity=0.258 Sum_probs=58.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK 295 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1367)
..+.++|..|+|||.||.++++... ..-..+++++ ..+++..+........ ...... +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~~------~~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFVN------FPQLLNRIKSTYKSSG---KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhccc---cccHHH----HHHHhcCC
Confidence 4578999999999999999998532 2223355554 3344555444432211 112222 23334433
Q ss_pred ceEEEEEcCCCCCchhhhh--hccccCC-CCCCcEEEEEcCch
Q 000660 296 KFLLVLDDVWNRNYDDWVQ--LRRPFEV-GAPGSKIIVTTRNQ 335 (1367)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~~ 335 (1367)
. ||||||+..+...+|.. +...+.. ...|..+||||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4 89999996543345543 2222221 13456789998753
No 167
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.10 E-value=0.0021 Score=80.22 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=85.1
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcc---cccc-cceEEEEEeCCccCHHHHHH
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ---VQDH-FDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~wv~~s~~~~~~~~~~ 264 (1367)
.++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +... .++.+|.. +...+
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-- 253 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-- 253 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH--
Confidence 58999999999999987642 23346899999999999999986421 1111 24455521 11111
Q ss_pred HHHHHhhhcCCCCCCChHHHHHHHHHHh-CCCceEEEEEcCCCC--------CchhhhhhccccCCCCCCcEEEEEcCch
Q 000660 265 TILTSIVASQNVGDPSLNSLQKELSKQL-SGKKFLLVLDDVWNR--------NYDDWVQLRRPFEVGAPGSKIIVTTRNQ 335 (1367)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 335 (1367)
+ .+... ..+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-+||-+|...
T Consensus 254 --l---aG~~~--~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 254 --L---AGTKY--RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred --h---cccch--hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 1 01100 112222222222222 346789999999531 112222223333221 224455555443
Q ss_pred hHHhh-------hCCCCceeCCCCChHHHHHHHHhhh
Q 000660 336 EVAEI-------MGTVPSYQLKKLSDNDCLAVFAQHS 365 (1367)
Q Consensus 336 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1367)
+.... .+-...+.++.++.++..+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 32111 1223578999999999999988653
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.10 E-value=0.0024 Score=63.29 Aligned_cols=88 Identities=20% Similarity=0.064 Sum_probs=46.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK 295 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1367)
..+.|+|++|+||||+|+.++...... ....+++..+........... ........ ...........+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999843222 123455554443322221111 11111111 1122222223333333333
Q ss_pred -ceEEEEEcCCCCC
Q 000660 296 -KFLLVLDDVWNRN 308 (1367)
Q Consensus 296 -~~LlVlDdv~~~~ 308 (1367)
..+|++|+++...
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 4899999997653
No 169
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.10 E-value=0.012 Score=75.30 Aligned_cols=51 Identities=24% Similarity=0.387 Sum_probs=38.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.+++|.+..+++|.+++......+..+..++.++|++|+|||++|+.+++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999988765321112223458999999999999999999984
No 170
>CHL00176 ftsH cell division protein; Validated
Probab=97.10 E-value=0.0058 Score=74.99 Aligned_cols=177 Identities=15% Similarity=0.196 Sum_probs=96.3
Q ss_pred CcccccchhHHHHHHH---HhcCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 000660 188 AKVYGRETEKKDVVEL---LLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKR 261 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (1367)
.+++|.++.++++.+. +..... -+....+-+.++|++|+|||++|++++.... .. ++.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccH----HH
Confidence 4578887666665544 332210 0112245688999999999999999987432 11 233321 11
Q ss_pred HHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCC----------chhh----hhhccccCC--CCCC
Q 000660 262 LTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRN----------YDDW----VQLRRPFEV--GAPG 325 (1367)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~----~~l~~~l~~--~~~g 325 (1367)
+. .... ......+...+.+..+..+++|++||+..-. ...+ ..+...+.. ...+
T Consensus 252 f~----~~~~------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 FV----EMFV------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HH----HHhh------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 11 1100 0112233444555556788999999994321 1122 222222211 2345
Q ss_pred cEEEEEcCchhHHh-hh-C---CCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCC
Q 000660 326 SKIIVTTRNQEVAE-IM-G---TVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDG 385 (1367)
Q Consensus 326 s~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g 385 (1367)
-.||.||...+..+ .+ . -...+.++..+.++-.++++.++-............+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCC
Confidence 56777776644322 12 1 2356788888888888888877644221223345677888777
No 171
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.07 E-value=0.0052 Score=79.36 Aligned_cols=157 Identities=16% Similarity=0.180 Sum_probs=83.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccc----cceEEEEEeCCccCHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH----FDLKAWTCVSDDFDVKRLT 263 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~ 263 (1367)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.++....-... ....+|.- +...+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh
Confidence 358999999999999996542 244568999999999999998874211100 12333321 111111
Q ss_pred HHHHHHhhhcCCCCCCChH-HHHHHHHHHhC-CCceEEEEEcCCCCC-------chhhhhhccccCCCCCCcEEEEEcCc
Q 000660 264 KTILTSIVASQNVGDPSLN-SLQKELSKQLS-GKKFLLVLDDVWNRN-------YDDWVQLRRPFEVGAPGSKIIVTTRN 334 (1367)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~-~~~~~l~~~l~-~k~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTtR~ 334 (1367)
. +... . .+.+ .+...+.+.-+ +++.+|++|++..-. ..+...+..+.... ..-++|.+|..
T Consensus 242 ----a---~~~~-~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~ 311 (852)
T TIGR03346 242 ----A---GAKY-R-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTL 311 (852)
T ss_pred ----h---cchh-h-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcH
Confidence 0 0000 1 1122 22333332222 468999999995321 00111222222211 12345555544
Q ss_pred hhHHh-------hhCCCCceeCCCCChHHHHHHHHhhh
Q 000660 335 QEVAE-------IMGTVPSYQLKKLSDNDCLAVFAQHS 365 (1367)
Q Consensus 335 ~~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1367)
.+... ...-...+.++..+.++...++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 43211 11223467889999999999887653
No 172
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.07 E-value=0.0087 Score=70.75 Aligned_cols=168 Identities=13% Similarity=0.161 Sum_probs=88.8
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccc---cccceEEEEEeCCcc
Q 000660 188 AKVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ---DHFDLKAWTCVSDDF 257 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~ 257 (1367)
.++.|.+..++++.+.+...-. -+-...+-+.++|++|+|||++|+++++..... .......++.++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4578899999998887642100 011234568899999999999999999853211 01123344444321
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH-hCCCceEEEEEcCCCCC-------chhh-----hhhccccCC--C
Q 000660 258 DVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQ-LSGKKFLLVLDDVWNRN-------YDDW-----VQLRRPFEV--G 322 (1367)
Q Consensus 258 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------~~~~-----~~l~~~l~~--~ 322 (1367)
.+ +....+. ....+..+.+..+.. -.+++++|++|+++... ..+. ..+...+.. .
T Consensus 261 ---eL----l~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 ---EL----LNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred ---hh----cccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 11 1100000 000111222222222 13578999999995320 0111 123222221 1
Q ss_pred CCCcEEEEEcCchhHHh-hh----CCCCceeCCCCChHHHHHHHHhhhc
Q 000660 323 APGSKIIVTTRNQEVAE-IM----GTVPSYQLKKLSDNDCLAVFAQHSL 366 (1367)
Q Consensus 323 ~~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~ 366 (1367)
..+..||.||...+..+ .+ .-...++++..+.++..++|+.+..
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 23445566665543321 11 1234589999999999999988753
No 173
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.01 Score=69.78 Aligned_cols=51 Identities=24% Similarity=0.414 Sum_probs=43.7
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHc
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+.+-+|.++-+++|++++.-....+..+.++++.+|++|+|||.+|+.|+.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 456799999999999998755443556789999999999999999999997
No 174
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.04 E-value=0.00047 Score=51.12 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=32.8
Q ss_pred CccceEEcCCCCccccCccccCceecCCCCcchhhHHhhhhcCCCCCCcceeEEcccCCCCCC
Q 000660 596 QRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFP 658 (1367)
Q Consensus 596 ~~Lr~L~L~~~~i~~lP~~i~~L~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~lp 658 (1367)
++|++|++++|.|+++|+.+++|. +|+.|++++|....+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~-----------------------~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLP-----------------------NLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCT-----------------------TSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCC-----------------------CCCEEEecCCCCCCCc
Confidence 479999999999999998887775 9999999999887654
No 175
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.00034 Score=72.68 Aligned_cols=69 Identities=12% Similarity=-0.001 Sum_probs=48.2
Q ss_pred hHHhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCc-cccCCCCCCccCcceEEEeccC
Q 000660 1083 SIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNL-VSFPEGGLPCAKLIKFNISWCK 1151 (1367)
Q Consensus 1083 ~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~ls~n~ 1151 (1367)
++...+.++|.|+.|+|+.|.+...+..--..+.+|++|.|.+..+. ....+.+..+|.++.|++|.|.
T Consensus 88 eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 88 EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 45566778899999999999987544221134568999999876544 2233445667888899888884
No 176
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0071 Score=68.67 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=92.6
Q ss_pred cCcccccchhHHH-HHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 000660 187 EAKVYGRETEKKD-VVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKT 265 (1367)
Q Consensus 187 ~~~~vGr~~~~~~-l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (1367)
+.-++|-...... +...+.+. .+.....+.|+|..|.|||.|++++.+. ...+......++++ .+....+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~---~g~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~ 157 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAEN---PGGAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTND 157 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhc---cCCcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHH
Confidence 4446665544333 22233222 1225788999999999999999999984 44444433333333 3455555
Q ss_pred HHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCc-hhh-hhhccccCC-CCCCcEEEEEcCc--------
Q 000660 266 ILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNY-DDW-VQLRRPFEV-GAPGSKIIVTTRN-------- 334 (1367)
Q Consensus 266 il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTtR~-------- 334 (1367)
++..+... -.+..++.. .-=++++||++--.. +.| +.+...|.. ...|-.||+|++.
T Consensus 158 ~v~a~~~~----------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 158 FVKALRDN----------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred HHHHHHhh----------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 55554321 123344444 233889999965211 122 222222221 1234489999964
Q ss_pred -hhHHhhhCCCCceeCCCCChHHHHHHHHhhhcC
Q 000660 335 -QEVAEIMGTVPSYQLKKLSDNDCLAVFAQHSLG 367 (1367)
Q Consensus 335 -~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 367 (1367)
+.+...+...-++++.+.+.+....++.+++..
T Consensus 226 ~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 226 EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 234444555578999999999999999887644
No 177
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0099 Score=67.17 Aligned_cols=160 Identities=19% Similarity=0.230 Sum_probs=92.4
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
.+...+.+.|++|+|||+||..++.. ..|+.+--++- +++ ++.. +......+........
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSp------e~m-------iG~s---EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISP------EDM-------IGLS---ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeCh------HHc-------cCcc---HHHHHHHHHHHHHHhh
Confidence 45667789999999999999999863 34664433221 110 0000 1111122333444455
Q ss_pred CCCceEEEEEcCCCCCchhhhhhccc------------c---CCCCCCcEEEEEcCchhHHhhhCC----CCceeCCCCC
Q 000660 293 SGKKFLLVLDDVWNRNYDDWVQLRRP------------F---EVGAPGSKIIVTTRNQEVAEIMGT----VPSYQLKKLS 353 (1367)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~------------l---~~~~~gs~ilvTtR~~~v~~~~~~----~~~~~l~~L~ 353 (1367)
+..--.||+||+..- .+|..+... + |+.++.--|+-||-.+.|...|+- ...+.++.++
T Consensus 596 kS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 667789999999442 455443321 2 222223335557777888887762 3578899998
Q ss_pred h-HHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHHHHHhh
Q 000660 354 D-NDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGL 396 (1367)
Q Consensus 354 ~-~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 396 (1367)
. ++..+.++..-.-.+...+.++.+.+.+| +-..|+-+-.+
T Consensus 674 ~~~~~~~vl~~~n~fsd~~~~~~~~~~~~~~--~~vgIKklL~l 715 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFSDDEVRAIAEQLLSKK--VNVGIKKLLML 715 (744)
T ss_pred chHHHHHHHHHccCCCcchhHHHHHHHhccc--cchhHHHHHHH
Confidence 7 77777777654113445566777777777 33334444333
No 178
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.98 E-value=0.0069 Score=73.49 Aligned_cols=185 Identities=14% Similarity=0.145 Sum_probs=95.9
Q ss_pred CcccccchhHHHHHHHHh---cCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 000660 188 AKVYGRETEKKDVVELLL---RDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKR 261 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (1367)
.+++|.+..++++.+++. ..+. .+....+-+.++|++|+|||++|+.+++... .. ++.++. ..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CC-----eeeccH----HH
Confidence 467888777666655443 1100 0112334578999999999999999997432 12 222221 11
Q ss_pred HHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCC----------chhhhh----hccccC--CCCCC
Q 000660 262 LTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRN----------YDDWVQ----LRRPFE--VGAPG 325 (1367)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~~~g 325 (1367)
+. .... ......+...+....+..+.+|++|++..-. ...+.. +...+. ....+
T Consensus 124 ~~----~~~~------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 124 FV----EMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HH----HHHh------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 11 1110 1122233444444445677899999994321 011222 221221 12234
Q ss_pred cEEEEEcCchhH-Hhhh----CCCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCC-hHHHHHH
Q 000660 326 SKIIVTTRNQEV-AEIM----GTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGL-PLAAQTL 393 (1367)
Q Consensus 326 s~ilvTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 393 (1367)
-.||.||...+. ...+ .-...+.++..+.++-.++|..+.-............+++.+.|. +-.|..+
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHH
Confidence 556667765432 1111 123568888888888888888765432111112244778888773 3334433
No 179
>PRK08118 topology modulation protein; Reviewed
Probab=96.97 E-value=0.00037 Score=70.34 Aligned_cols=34 Identities=38% Similarity=0.641 Sum_probs=27.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCcccc-cccceEEE
Q 000660 217 VIPIIGMGGLGKTTLAQLVYNDKQVQ-DHFDLKAW 250 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 250 (1367)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999865443 45777776
No 180
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.94 E-value=0.01 Score=59.64 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=76.4
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccccc------------------ccceEEEEEe
Q 000660 192 GRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQD------------------HFDLKAWTCV 253 (1367)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~F~~~~wv~~ 253 (1367)
|-++..+.+.+.+..+. -...+.++|+.|+||+++|..+++..--.. ...-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 45666777777775542 245678999999999999999875321111 1122333322
Q ss_pred CCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh-----CCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEE
Q 000660 254 SDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL-----SGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKI 328 (1367)
Q Consensus 254 s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (1367)
.... .....+++. .+.+.+ .+++=++|+||+...+.+.+..++..+.....++++
T Consensus 76 ~~~~-------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 76 DKKK-------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp TTSS-------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred cccc-------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 2210 011233333 222222 234558999999888888888998888777788999
Q ss_pred EEEcCchh-HHhhh-CCCCceeCCCC
Q 000660 329 IVTTRNQE-VAEIM-GTVPSYQLKKL 352 (1367)
Q Consensus 329 lvTtR~~~-v~~~~-~~~~~~~l~~L 352 (1367)
|++|++.. +...+ .-...+.+.++
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEEECChHHChHHHHhhceEEecCCC
Confidence 88888753 32222 22344555544
No 181
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.032 Score=62.33 Aligned_cols=177 Identities=11% Similarity=0.100 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccccccc---ce-----EEEEEeCCccCHHHHHHHHHH
Q 000660 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF---DL-----KAWTCVSDDFDVKRLTKTILT 268 (1367)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~~s~~~~~~~~~~~il~ 268 (1367)
.+.+.+.+..+. -.....+.|+.|+||+++|+.++...--.... .| +-++.....+|+..+
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 455666665432 24567799999999999999987532111100 00 000000111111000
Q ss_pred HhhhcCCCCCCChHHHHH---HHHHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCch-hHHhhh-C
Q 000660 269 SIVASQNVGDPSLNSLQK---ELSKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQ-EVAEIM-G 342 (1367)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~---~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~ 342 (1367)
... ....-.++++.+ .+... ..+++=++|+|++...+......+...+.....++.+|++|.+. .+...+ +
T Consensus 80 --~p~-~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 --EPI-DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred --ccc-cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 000 001122333332 22211 12556688899998877777888887777666677777777653 333222 2
Q ss_pred CCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHH
Q 000660 343 TVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQ 391 (1367)
Q Consensus 343 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 391 (1367)
-...+.+.++++++..+.+...... + ...+...++.++|.|+.+.
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~--~--~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSA--E--ISEILTALRINYGRPLLAL 201 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhcc--C--hHHHHHHHHHcCCCHHHHH
Confidence 3467899999999999888775421 1 1235567888999997443
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.92 E-value=0.0059 Score=78.40 Aligned_cols=45 Identities=27% Similarity=0.411 Sum_probs=37.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 359999999999999996542 244569999999999999999874
No 183
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.92 E-value=0.0046 Score=75.18 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=40.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.+++|.++.++++..|+..... .....+++.|+|++|+||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999865432 2234568999999999999999999874
No 184
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.90 E-value=0.019 Score=73.01 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=70.6
Q ss_pred CcccccchhHHHHHHHHhcCCCC---CCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLS---NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
..++|.+..++.+.+.+...... .+....++.++|+.|+|||+||+.++... +...+.++.+...+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc---
Confidence 45889999999998888743210 11234578899999999999999998732 22345555554222111
Q ss_pred HHHHHhhhcCCC-CCCChHHHHHHHHHHhCCCc-eEEEEEcCCCCCchhhhhhccccCC
Q 000660 265 TILTSIVASQNV-GDPSLNSLQKELSKQLSGKK-FLLVLDDVWNRNYDDWVQLRRPFEV 321 (1367)
Q Consensus 265 ~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~ 321 (1367)
+..-++..... ...... .+.+.++.++ -+++||+++....+.+..+...+..
T Consensus 526 -~~~lig~~~gyvg~~~~~----~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGG----LLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -HHHHhcCCCCCcccchhh----HHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 11111211110 111112 2333444344 4999999988777777777766543
No 185
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.89 E-value=0.02 Score=62.99 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=28.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLT 263 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 263 (1367)
+-+.+.|++|+|||++|+.++.. ... ..++++++...+..+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHHh
Confidence 34568999999999999999862 222 23456666655554443
No 186
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.89 E-value=0.03 Score=58.18 Aligned_cols=175 Identities=18% Similarity=0.278 Sum_probs=103.0
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeC-CccCHHHHHHHHHHHhhhcCCCCCCCh----HHHHHHH
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVS-DDFDVKRLTKTILTSIVASQNVGDPSL----NSLQKEL 288 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~il~~l~~~~~~~~~~~----~~~~~~l 288 (1367)
+.+++.++|.-|.|||.++++...... + +.++-|.+. ...+...+...|+..+.... .... ++..+.+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~-~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p---~~~~~~~~e~~~~~L 122 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN-E---DQVAVVVIDKPTLSDATLLEAIVADLESQP---KVNVNAVLEQIDREL 122 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-C---CceEEEEecCcchhHHHHHHHHHHHhccCc---cchhHHHHHHHHHHH
Confidence 346899999999999999995543211 1 111113333 34566778888888877632 2333 3333444
Q ss_pred HHHh-CCCc-eEEEEEcCCCCCchhhhhhccccCCCCCCc---EEEEEcCch-------hHHhhhC-CCCc-eeCCCCCh
Q 000660 289 SKQL-SGKK-FLLVLDDVWNRNYDDWVQLRRPFEVGAPGS---KIIVTTRNQ-------EVAEIMG-TVPS-YQLKKLSD 354 (1367)
Q Consensus 289 ~~~l-~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~ilvTtR~~-------~v~~~~~-~~~~-~~l~~L~~ 354 (1367)
.+.. +++| ..+++|+..+...+..+.++........++ +|+..-..+ .+....+ -... |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 4433 4777 899999997766666555543321111111 233322211 1111111 1123 89999999
Q ss_pred HHHHHHHHhhhcC---Ccch-HHHHHHHHHHhcCCChHHHHHHHh
Q 000660 355 NDCLAVFAQHSLG---SHKL-LEEIGKKIVTKCDGLPLAAQTLGG 395 (1367)
Q Consensus 355 ~~~~~lf~~~~~~---~~~~-~~~~~~~i~~~~~g~PLai~~~~~ 395 (1367)
++...+++.+..+ ..+- -.+....|..+..|.|.+|..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9888887776543 2222 345677889999999999988764
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0031 Score=76.88 Aligned_cols=123 Identities=18% Similarity=0.307 Sum_probs=78.0
Q ss_pred CcccccchhHHHHHHHHhcCCCC---CCCCceEEEEeCCCCCcHHHHHHHHHcCccccccc---ceEEEEEeCCccCHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLS---NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF---DLKAWTCVSDDFDVKR 261 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~ 261 (1367)
..++|.++.++.+.+.+...... ......+...+|+.|||||.||++++.. -| +..+-++.|.-
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy----- 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEY----- 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHH-----
Confidence 56999999999999998765431 2234678888999999999999998862 13 23344444322
Q ss_pred HHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCce-EEEEEcCCCCCchhhhhhccccCCC
Q 000660 262 LTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKF-LLVLDDVWNRNYDDWVQLRRPFEVG 322 (1367)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 322 (1367)
.-+.-+..+.+..+ .-...++ --.+.+.+++++| +|.||.+....++..+-+...|.++
T Consensus 561 ~EkHsVSrLIGaPP-GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 561 MEKHSVSRLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHhCCCC-CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 11222233333332 2112222 2345566677888 8889999887777777777766553
No 188
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.84 E-value=0.0019 Score=67.93 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=28.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEe
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV 253 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 253 (1367)
-.++|+|..|+||||++..+..+ ....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 35679999999999999999874 5667877776644
No 189
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.83 E-value=0.0014 Score=48.69 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=24.5
Q ss_pred CccceeeecccCCcccCccccCCCCCccEEEecccCCc
Q 000660 1092 TSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNL 1129 (1367)
Q Consensus 1092 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 1129 (1367)
++|++|++++|++.. +|..+++|++|++|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 367777777777775 5555777777777777777654
No 190
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.82 E-value=0.058 Score=56.29 Aligned_cols=208 Identities=17% Similarity=0.200 Sum_probs=121.8
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCc---cc-ccccceEEEEEeCCc---------
Q 000660 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK---QV-QDHFDLKAWTCVSDD--------- 256 (1367)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~-~~~F~~~~wv~~s~~--------- 256 (1367)
+.++++....+...... +...-..++|+.|.||-|.+..+.+.. .+ +-.-+.+.|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 56777777777666532 346778899999999999887765531 11 112344455543332
Q ss_pred ------------cCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCce-EEEEEcCCCCCchhhhhhccccCCCC
Q 000660 257 ------------FDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKF-LLVLDDVWNRNYDDWVQLRRPFEVGA 323 (1367)
Q Consensus 257 ------------~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 323 (1367)
...+.+.+++++++......+. -..+.| ++|+-.+.+-+.+....++.....-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1223455555555544332110 012445 66666665555566667777666666
Q ss_pred CCcEEEEEcCch--hHHhhhCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCChHHHHHHHhhhcCC
Q 000660 324 PGSKIIVTTRNQ--EVAEIMGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGK 400 (1367)
Q Consensus 324 ~gs~ilvTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~ 400 (1367)
..+|+|+...+. -+...-.-.-.+.+...+++|....+++.+-. .-.--.+++.+|+++++|.---+..+-...+-+
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 778888755432 11211122345789999999999988877644 112226889999999998654443433333221
Q ss_pred --C--------CHHHHHHHHhchhhh
Q 000660 401 --H--------DRREWERVLCSKIWE 416 (1367)
Q Consensus 401 --~--------~~~~w~~~l~~~~~~ 416 (1367)
+ ...+|+-++.+....
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHH
Confidence 0 145788777654433
No 191
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.80 E-value=0.014 Score=67.99 Aligned_cols=225 Identities=17% Similarity=0.144 Sum_probs=120.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCc
Q 000660 217 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKK 296 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (1367)
++.|.|+-++||||+++.+... ..+. .+++..-+......-+.+. ...+...-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~------------------~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDL------------------LRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHH------------------HHHHHHhhccCC
Confidence 9999999999999999777653 2122 4555433221111111111 111111111278
Q ss_pred eEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHH-----hhh-CCCCceeCCCCChHHHHHHHHhhhcCCcc
Q 000660 297 FLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVA-----EIM-GTVPSYQLKKLSDNDCLAVFAQHSLGSHK 370 (1367)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 370 (1367)
..|+||.|... .+|......+.+.++. +|++|+-+..+. ... |-...+++-||+..|...+-...+...
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~~~-- 170 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIEPS-- 170 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccchh--
Confidence 89999999665 6898888787776655 888888774432 222 334678999999999876543111000
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhchhhhccccccCchHHHHHhhhCCChhHHHHhhhhccCC
Q 000660 371 LLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFP 450 (1367)
Q Consensus 371 ~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp 450 (1367)
.. ...-+-.-..||.|-++..-...-. ..+....++.....+... + .. +..+++.+.+++...
T Consensus 171 ~~-~~~f~~Yl~~GGfP~~v~~~~~~~~---~~~~~~~~~~~Di~~~~~----~--------~~-~~~~k~i~~~l~~~~ 233 (398)
T COG1373 171 KL-ELLFEKYLETGGFPESVKADLSEKK---LKEYLDTILKRDIIERGK----I--------EN-ADLMKRILRFLASNI 233 (398)
T ss_pred HH-HHHHHHHHHhCCCcHHHhCcchhhH---HHHHHHHHHHHHHHHHcC----c--------cc-HHHHHHHHHHHHhhc
Confidence 11 1122223456899988764332111 011112222111111110 0 01 134566666665543
Q ss_pred CCcccCHHHHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhcCcccc
Q 000660 451 KDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSRSFLQQ 498 (1367)
Q Consensus 451 ~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 498 (1367)
+..+....+.+.+- ....++...|++-|.+.-++..
T Consensus 234 -g~~~s~~~la~~l~-----------~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 234 -GSPISYSSLARELK-----------GISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred -CCccCHHHHHHHHh-----------ccchHHHHHHHHHHHHhhheEE
Confidence 34566677666542 0114567778888877777654
No 192
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.80 E-value=0.0008 Score=69.06 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=45.0
Q ss_pred HHhhhccCCccceeeecccCCcccC----ccccCCCCCccEEEecccCCccc----cC-------CCCCCccCcceEEEe
Q 000660 1084 IAERLDNNTSLEIIRIDFCKNLKIL----PSGLHNLRQLQEIEIWECKNLVS----FP-------EGGLPCAKLIKFNIS 1148 (1367)
Q Consensus 1084 ~~~~~~~l~~L~~L~l~~n~~~~~~----p~~~~~l~~L~~L~L~~n~~~~~----~p-------~~~~~l~~L~~L~ls 1148 (1367)
....+.-+..+..++||+|.+...- ...+.+-.+|+..+++.- +++. +| ..+..||.|+..+||
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 3344444566666666666655322 223334445555555542 1111 11 234456666666666
Q ss_pred ccCCCCccccc----CCCCCCCcEEEccCC
Q 000660 1149 WCKGLEALPKG----LHNLTSLQELTIGRG 1174 (1367)
Q Consensus 1149 ~n~~~~~~p~~----~~~l~~L~~L~l~~n 1174 (1367)
.|-+....|+. +++-+.|.+|.+++|
T Consensus 101 DNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 101 DNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 66655444432 344556666666665
No 193
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.68 E-value=0.0076 Score=69.75 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=36.5
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.++||++.++.+...+..++ -|.|.|++|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 48999999999999887653 4789999999999999999874
No 194
>PRK08181 transposase; Validated
Probab=96.66 E-value=0.003 Score=68.58 Aligned_cols=101 Identities=21% Similarity=0.145 Sum_probs=53.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK 295 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1367)
.-+.++|++|+|||.||.++.+.. ......++|+. ..++..++.... .....+.....+ . +
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~------~~~L~~~l~~a~------~~~~~~~~l~~l----~-~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTR------TTDLVQKLQVAR------RELQLESAIAKL----D-K 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeee------HHHHHHHHHHHH------hCCcHHHHHHHH----h-c
Confidence 458999999999999999998743 12222345554 334444443321 112222222222 1 3
Q ss_pred ceEEEEEcCCCCCchhhh--hhccccCCCCCCcEEEEEcCch
Q 000660 296 KFLLVLDDVWNRNYDDWV--QLRRPFEVGAPGSKIIVTTRNQ 335 (1367)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~ilvTtR~~ 335 (1367)
-=|||+||+.......|. .+...+.....+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 349999999654333332 2322222211123588888764
No 195
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.64 E-value=0.0053 Score=63.16 Aligned_cols=133 Identities=20% Similarity=0.251 Sum_probs=66.1
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc--c-------CHH-
Q 000660 191 YGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD--F-------DVK- 260 (1367)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~-------~~~- 260 (1367)
..+..+-...++.|.. ..++.+.|++|.|||.||.+..-+.-..+.|+..+++.-.-. . +..
T Consensus 3 ~p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 3456667777777763 358999999999999999988865444577888777642111 1 000
Q ss_pred ---HHHHHHHHHhhhcCCCCCCChHHHHHHH------HHHhCCC---ceEEEEEcCCCCCchhhhhhccccCCCCCCcEE
Q 000660 261 ---RLTKTILTSIVASQNVGDPSLNSLQKEL------SKQLSGK---KFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKI 328 (1367)
Q Consensus 261 ---~~~~~il~~l~~~~~~~~~~~~~~~~~l------~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (1367)
-.+.-+...+..-. .....+.+.+.= -.+++++ ...||+|++.+.+..++..+.... +.||||
T Consensus 75 K~~p~~~p~~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~ski 149 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKI 149 (205)
T ss_dssp ---TTTHHHHHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EE
T ss_pred HHHHHHHHHHHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEE
Confidence 01111111111100 112222222110 1234554 459999999888777777765554 678999
Q ss_pred EEEcCchh
Q 000660 329 IVTTRNQE 336 (1367)
Q Consensus 329 lvTtR~~~ 336 (1367)
|++--...
T Consensus 150 i~~GD~~Q 157 (205)
T PF02562_consen 150 IITGDPSQ 157 (205)
T ss_dssp EEEE----
T ss_pred EEecCcee
Confidence 99876543
No 196
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.62 E-value=0.0064 Score=66.14 Aligned_cols=51 Identities=24% Similarity=0.171 Sum_probs=37.5
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCccccc----ccceEEEEEeCCccCHHHHH
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVKRLT 263 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~ 263 (1367)
....++.|+|.+|+|||++|.+++....... .-..++|++....++..++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 4568999999999999999999974322222 13578999988877765443
No 197
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.62 E-value=0.012 Score=75.68 Aligned_cols=138 Identities=19% Similarity=0.236 Sum_probs=76.1
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++... ..-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhh-h----
Confidence 4689999999999888864321 0112235788999999999999999986321 1112234444443211 1
Q ss_pred HHHHHhhhcCCCCCCChHHHHHHHHHHhCCCc-eEEEEEcCCCCCchhhhhhccccCCC-----------CCCcEEEEEc
Q 000660 265 TILTSIVASQNVGDPSLNSLQKELSKQLSGKK-FLLVLDDVWNRNYDDWVQLRRPFEVG-----------APGSKIIVTT 332 (1367)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTt 332 (1367)
.....+.+..+ .....+. ...+.+.++.++ -+|+||++.......+..+...+..+ ...+-||+||
T Consensus 641 ~~~~~LiG~~p-gy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 641 HSVSRLVGAPP-GYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred hhHHHHhCCCC-cccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 11222222211 1111111 112333333333 59999999777767777776655432 1223377787
Q ss_pred Cc
Q 000660 333 RN 334 (1367)
Q Consensus 333 R~ 334 (1367)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 65
No 198
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.062 Score=63.95 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=92.0
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTI 266 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (1367)
+.+-+|-++-+++|++.|.-......-+..++++||++|+|||.|++.++. .....|-. +.+..--|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHh----
Confidence 456799999999999998643222334568999999999999999999997 34444522 233333232221
Q ss_pred HHHhhhcCCC-CCCChHHHHHHHHHHhCCCceEEEEEcCCCCCch----hhhhhccccCC-------------CCCCcEE
Q 000660 267 LTSIVASQNV-GDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYD----DWVQLRRPFEV-------------GAPGSKI 328 (1367)
Q Consensus 267 l~~l~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~-------------~~~gs~i 328 (1367)
.+..-. -..-...+.+.+++. +.+.=+++||.++....+ --..+...|.+ ..-=|+|
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ----ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 111100 000112233333332 446679999998543210 01111111111 0111333
Q ss_pred -EEEcCc-hh-H-HhhhCCCCceeCCCCChHHHHHHHHhhhc
Q 000660 329 -IVTTRN-QE-V-AEIMGTVPSYQLKKLSDNDCLAVFAQHSL 366 (1367)
Q Consensus 329 -lvTtR~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 366 (1367)
.|||-+ -+ + +..+.-.+++++.+-+++|-.++-+++..
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 445444 22 2 22334567899999999998888877754
No 199
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.0072 Score=70.82 Aligned_cols=188 Identities=18% Similarity=0.222 Sum_probs=106.6
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
+++||.+.-...|...+....- ..--...|+-|+||||+|+.++...-... | .....+..=...++|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 3479999999999998865432 23345779999999999998874221110 0 0001111111112221
Q ss_pred HH-------hhhcCCCCCCChHHHHHHHHHH-hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hhHH
Q 000660 268 TS-------IVASQNVGDPSLNSLQKELSKQ-LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QEVA 338 (1367)
Q Consensus 268 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 338 (1367)
.. +........++++++.+.+... .++|.=+.|+|.|.-.+...|..+...+.......+.|..|.+ ..+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 0001111122222222222211 1234448999999877778888888777655555555555554 4443
Q ss_pred h-hhCCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHHHHHhcCCCh
Q 000660 339 E-IMGTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKKIVTKCDGLP 387 (1367)
Q Consensus 339 ~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~i~~~~~g~P 387 (1367)
. ..+-...|.++.++.++-...+...+-. .-....+...-|++..+|..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCCh
Confidence 2 2344578999999999888888777644 22334455666777776644
No 200
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.60 E-value=0.00083 Score=68.96 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=98.0
Q ss_pred HHhhhccCCccceeeecccCCcccCccc----cCCCCCccEEEecccCCccccCC--------------CCCCccCcceE
Q 000660 1084 IAERLDNNTSLEIIRIDFCKNLKILPSG----LHNLRQLQEIEIWECKNLVSFPE--------------GGLPCAKLIKF 1145 (1367)
Q Consensus 1084 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~~p~--------------~~~~l~~L~~L 1145 (1367)
+...+..|+.|+..+||+|.+....|.. +++-+.|.+|.+++|.+ |.+.. -...-|.|+..
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 4456789999999999999998766653 46678999999999853 33221 12234789999
Q ss_pred EEeccCCCCcc----cccCCCCCCCcEEEccCCCCCCC------CcCCCCCCCccEEEecCCcchhhhhhhhcccCCCCC
Q 000660 1146 NISWCKGLEAL----PKGLHNLTSLQELTIGRGVELPS------LEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFS 1215 (1367)
Q Consensus 1146 ~ls~n~~~~~~----p~~~~~l~~L~~L~l~~n~~~~~------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~ 1215 (1367)
....|++-.-. ...+..-..|+.+.+..|..-+. +-....+.+|+.|||.+|.++..........+...+
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 99999853211 11233336889999988854322 112356789999999999776665555455555667
Q ss_pred cccEEEecCC
Q 000660 1216 SLRHFKISEC 1225 (1367)
Q Consensus 1216 ~L~~L~l~~~ 1225 (1367)
.|+.|.+..|
T Consensus 243 ~lrEL~lnDC 252 (388)
T COG5238 243 LLRELRLNDC 252 (388)
T ss_pred hhhhccccch
Confidence 7899999888
No 201
>PRK07261 topology modulation protein; Provisional
Probab=96.55 E-value=0.0064 Score=61.81 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=40.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCcccc-cccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYNDKQVQ-DHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK 295 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1367)
.|.|+|++|+||||||+.+.....+. -+.|...|-... ...+.++....+.+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW----------------------QERDDDDMIADISNFLLKH 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc----------------------ccCCHHHHHHHHHHHHhCC
Confidence 47899999999999999998643221 234555552211 1122344555556666655
Q ss_pred ceEEEEEcCCC
Q 000660 296 KFLLVLDDVWN 306 (1367)
Q Consensus 296 ~~LlVlDdv~~ 306 (1367)
+ .|+|+...
T Consensus 60 ~--wIidg~~~ 68 (171)
T PRK07261 60 D--WIIDGNYS 68 (171)
T ss_pred C--EEEcCcch
Confidence 5 67787743
No 202
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.54 E-value=0.01 Score=76.72 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=77.8
Q ss_pred CcccccchhHHHHHHHHhcCCCC---CCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLS---NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
..++|.+..++.+...+...... ......++.++|+.|+|||++|+.+.... ...-...+.++++.-.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccch---
Confidence 46899999999999998753210 11234678899999999999999998732 11112234445543222111
Q ss_pred HHHHHhhhcCC-C-CCCChHHHHHHHHHHhCCCc-eEEEEEcCCCCCchhhhhhccccCCC-----------CCCcEEEE
Q 000660 265 TILTSIVASQN-V-GDPSLNSLQKELSKQLSGKK-FLLVLDDVWNRNYDDWVQLRRPFEVG-----------APGSKIIV 330 (1367)
Q Consensus 265 ~il~~l~~~~~-~-~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilv 330 (1367)
...+.+..+ . .......+... ++.++ .+|+||++.....+.+..+...+..+ ...+-||+
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~----v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEA----VRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHH----HHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 111211111 0 11111223333 33333 48999999887777788777766443 12344777
Q ss_pred EcCc
Q 000660 331 TTRN 334 (1367)
Q Consensus 331 TtR~ 334 (1367)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 7764
No 203
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.54 E-value=0.025 Score=57.03 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=35.1
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHc
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
.++||-++.++++.-.-.+ +...-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 4689999888888766543 3467788999999999998877776
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.53 E-value=0.0023 Score=71.21 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=42.2
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCc
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 239 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (1367)
+++|.++.++++++++.......+.+.+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999976432123456889999999999999999998743
No 205
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.53 E-value=0.021 Score=58.63 Aligned_cols=159 Identities=17% Similarity=0.197 Sum_probs=86.8
Q ss_pred CcccccchhHHH---HHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 000660 188 AKVYGRETEKKD---VVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 188 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
.++||.++.+.+ |++.|...+.-++-..+-|..+|++|.|||.+|+++++...+ .| +.+. ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vk----at~l-- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVK----ATEL-- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEec----hHHH--
Confidence 468998876654 666775544334455788999999999999999999996443 22 1111 1111
Q ss_pred HHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCc------------hhhhhhccccCC--CCCCcEEEE
Q 000660 265 TILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNY------------DDWVQLRRPFEV--GAPGSKIIV 330 (1367)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------------~~~~~l~~~l~~--~~~gs~ilv 330 (1367)
|-+.++ +...++.+...+.-+.-++.+.+|.+.-... +....+...+.. .+.|...|.
T Consensus 188 -iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 188 -IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 111111 1112222222223345689999998732110 112222222221 344666666
Q ss_pred EcCchhHHhh-hC--CCCceeCCCCChHHHHHHHHhhhcC
Q 000660 331 TTRNQEVAEI-MG--TVPSYQLKKLSDNDCLAVFAQHSLG 367 (1367)
Q Consensus 331 TtR~~~v~~~-~~--~~~~~~l~~L~~~~~~~lf~~~~~~ 367 (1367)
.|...+..+. +. -..-++..--+++|-.+++..++-.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 6666554332 22 2244666666788888888877643
No 206
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.48 E-value=0.017 Score=64.76 Aligned_cols=101 Identities=23% Similarity=0.261 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccce-EEEEEeCCc-cCHHHHHHHHHHHhhhcC
Q 000660 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDL-KAWTCVSDD-FDVKRLTKTILTSIVASQ 274 (1367)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~-~~~~~~~~~il~~l~~~~ 274 (1367)
..++++.+..- ++...+.|+|.+|+|||||++.+++... .++-+. .+|+.+.+. .++.++.+.+...+....
T Consensus 120 ~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 120 SMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 45577777643 2334568999999999999999887421 122233 467666654 577888888887666543
Q ss_pred CCCCCChHH-----HHHHHHHHh--CCCceEEEEEcC
Q 000660 275 NVGDPSLNS-----LQKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 275 ~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 304 (1367)
. +...... ....+.+++ ++++++||+|++
T Consensus 194 ~-de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 F-DRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 2 1111111 111122222 589999999999
No 207
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.45 E-value=0.0062 Score=61.28 Aligned_cols=132 Identities=18% Similarity=0.148 Sum_probs=67.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcc-cccccceEEEEEeCCccCHHHHHHHHHH
Q 000660 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VQDHFDLKAWTCVSDDFDVKRLTKTILT 268 (1367)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~il~ 268 (1367)
+||....++++++.+..-. ... .-|.|+|..|+||+.+|+.+++... -.+. -+-|+++.- +.+.+-.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a---~~~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~p---fi~vnc~~~-~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA---SSD-LPVLITGETGTGKELLARAIHNNSPRKNGP---FISVNCAAL-PEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT---TST-S-EEEECSTTSSHHHHHHHHHHCSTTTTS----EEEEETTTS--HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHh---CCC-CCEEEEcCCCCcHHHHHHHHHHhhhcccCC---eEEEehhhh-hcchhhhhhhc
Confidence 4788888888888776532 122 4456999999999999999998432 1222 344555532 33332222222
Q ss_pred HhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCC------C-----CCCcEEEEEcCch
Q 000660 269 SIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEV------G-----APGSKIIVTTRNQ 335 (1367)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~------~-----~~gs~ilvTtR~~ 335 (1367)
...+.......... -.+.+ -..=-|+||++.+-.......+...+.. + ....|||.||...
T Consensus 73 ~~~~~~~~~~~~~~---G~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 73 HEKGAFTGARSDKK---GLLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp BCSSSSTTTSSEBE---HHHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cccccccccccccC---Cceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 11110000000011 12222 2344788999977665555555544432 1 1256889888753
No 208
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.44 E-value=0.006 Score=78.07 Aligned_cols=137 Identities=16% Similarity=0.184 Sum_probs=76.2
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.+|+.++.. .-+.....+-++++.-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 5689999999999998864321 01234568899999999999999988763 21111222333333211110
Q ss_pred HHHHHhhhcCC-C-CCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCC-----------CCcEEEEE
Q 000660 265 TILTSIVASQN-V-GDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGA-----------PGSKIIVT 331 (1367)
Q Consensus 265 ~il~~l~~~~~-~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 331 (1367)
-...+.+..+ . +...-..+...+++ ...-+|+||++....++.++.+...+..+. ..+-||+|
T Consensus 640 -~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 -TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred -hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1111211111 0 11111223333332 344599999997777666777766554432 34556667
Q ss_pred cCc
Q 000660 332 TRN 334 (1367)
Q Consensus 332 tR~ 334 (1367)
|.-
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 654
No 209
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.1 Score=59.16 Aligned_cols=181 Identities=13% Similarity=0.068 Sum_probs=100.8
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccccccc---ce-----EEEEEeCCccCHHHHHHHHH
Q 000660 196 EKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF---DL-----KAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~~s~~~~~~~~~~~il 267 (1367)
.-+++.+.+..+. -..-+.+.|+.|+||+++|..++...--...- .| +-++.....+|+..+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 3566777775432 24677899999999999999876422110000 00 000000111111000
Q ss_pred HHhhhcCCCCCCChHHHHHHHHHH----hCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hhHHhh-h
Q 000660 268 TSIVASQNVGDPSLNSLQKELSKQ----LSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QEVAEI-M 341 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~ 341 (1367)
........-.++++.+..+.. ..+++=++|+|++...+......+...+.....++.+|.+|.+ ..+... .
T Consensus 80 ---~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ---ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 000000112233333322211 1256669999999877777777787777665666766666665 334433 2
Q ss_pred CCCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 342 GTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 342 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
+-...+.+.+++++++.+.+.... +. ..+.+..++..++|.|..+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~~---~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-TM---SQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 334568999999999988876542 11 1234677899999999755433
No 210
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.40 E-value=0.012 Score=65.67 Aligned_cols=122 Identities=15% Similarity=0.196 Sum_probs=69.0
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhh
Q 000660 192 GRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIV 271 (1367)
Q Consensus 192 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 271 (1367)
+|....+...+++..-. .....+-+.++|..|+|||.||.++++... +..+. +.++++ ..++.++-....
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEH------HHHHHHHHHHHh
Confidence 45444555555654321 112346788999999999999999998643 22333 455554 344555544432
Q ss_pred hcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhh--hcccc-CCC-CCCcEEEEEcCc
Q 000660 272 ASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQ--LRRPF-EVG-APGSKIIVTTRN 334 (1367)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~ilvTtR~ 334 (1367)
. .+... .+.. ++ +-=||||||+.-+....|.. +...+ ... ..+-.+|+||--
T Consensus 205 ~------~~~~~---~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D------GSVKE---KIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c------CcHHH---HHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 12222 2222 22 34589999997766667764 43333 211 234567888864
No 211
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.075 Score=59.97 Aligned_cols=94 Identities=17% Similarity=0.237 Sum_probs=64.6
Q ss_pred CCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hhHHhhh-CCCCceeCCCCChHHHHHHHHhhhcCCcch
Q 000660 294 GKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLGSHKL 371 (1367)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 371 (1367)
+++=++|+|++...+...+..+...+..-.+++.+|.+|.+ ..+...+ +-...+.+.+++.++..+.+.... .. .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~~-~ 207 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--VA-D 207 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--CC-h
Confidence 44558899999888878888888888766667766555554 4443332 334678999999999998887652 11 1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHH
Q 000660 372 LEEIGKKIVTKCDGLPLAAQTLG 394 (1367)
Q Consensus 372 ~~~~~~~i~~~~~g~PLai~~~~ 394 (1367)
...++..++|.|..+..+.
T Consensus 208 ----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 208 ----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ----HHHHHHHcCCCHHHHHHHH
Confidence 1235778899998665444
No 212
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.38 E-value=0.0055 Score=60.67 Aligned_cols=102 Identities=17% Similarity=0.049 Sum_probs=60.9
Q ss_pred CccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCC--cccccCCCCCCCcEE
Q 000660 1092 TSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLE--ALPKGLHNLTSLQEL 1169 (1367)
Q Consensus 1092 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~--~~p~~~~~l~~L~~L 1169 (1367)
.+...+||++|.+.. + ..|..++.|.+|.+++|.++..-|.-..-+++|+.|.+.+|.+.. .+ ..+..||.|++|
T Consensus 42 d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCcccee
Confidence 355667777777664 2 245667778888887777766555444445677777777777532 22 235567777777
Q ss_pred EccCCCCCCCCcC----CCCCCCccEEEecC
Q 000660 1170 TIGRGVELPSLEE----DGLPTNLHSLDIRG 1196 (1367)
Q Consensus 1170 ~l~~n~~~~~~~~----~~~~~~L~~L~L~~ 1196 (1367)
.+-+|+....-.. ...+|+|+.||..+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777653322111 23455666666554
No 213
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.33 E-value=0.013 Score=63.00 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=35.5
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHH
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRL 262 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 262 (1367)
....++.|+|.+|+|||++|.+++... ...-..++|++.. .++..++
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH
Confidence 456899999999999999999998642 2234568899887 5665544
No 214
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.039 Score=64.87 Aligned_cols=53 Identities=21% Similarity=0.132 Sum_probs=35.7
Q ss_pred ccCcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 186 DEAKVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.-.++=|.++-++++.+.+.-.-. -+-...+-|..+|++|.|||++|+++++.
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 344555676666666554432110 02345677889999999999999999984
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.27 E-value=0.018 Score=61.60 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=55.9
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
...+.++|.+|+|||+||.++++....+ -..+++++ ..++...+-.... . ...+.+. +.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~-~---~~~~~~~----~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFS-N---SETSEEQ----LLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHh-h---ccccHHH----HHHHhc-
Confidence 3578899999999999999999853222 22345553 3444444333321 1 1122222 223344
Q ss_pred CceEEEEEcCCCCCchhhhh--hccccCCC-CCCcEEEEEcCc
Q 000660 295 KKFLLVLDDVWNRNYDDWVQ--LRRPFEVG-APGSKIIVTTRN 334 (1367)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 334 (1367)
+.=+||+||+......+|.. +...+... ...-.+||||.-
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 33488889997665556664 22222111 123346777764
No 216
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.26 E-value=0.0044 Score=63.22 Aligned_cols=101 Identities=24% Similarity=0.302 Sum_probs=50.6
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
..-+.++|..|+|||.||.++.+.. ++..+ .+.|+.+ .+++. .+.... .....+.... .+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~~L~~----~l~~~~--~~~~~~~~~~----~l~~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------SDLLD----ELKQSR--SDGSYEELLK----RLKR 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHH----HHHCCH--CCTTHCHHHH----HHHT
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------Cceec----cccccc--cccchhhhcC----cccc
Confidence 3568999999999999999998743 22223 3455553 33333 333221 1222223222 2222
Q ss_pred CceEEEEEcCCCCCchhhhh--hccccCCC-CCCcEEEEEcCch
Q 000660 295 KKFLLVLDDVWNRNYDDWVQ--LRRPFEVG-APGSKIIVTTRNQ 335 (1367)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~~ 335 (1367)
-=||||||+.-....+|.. +...+... .++ .+||||.-.
T Consensus 109 -~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 109 -VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp -SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred -ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 3478899997665445543 11111111 123 578888753
No 217
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.077 Score=57.80 Aligned_cols=158 Identities=14% Similarity=0.161 Sum_probs=87.7
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVK 260 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (1367)
.++=|-++++++|.+...-.-. -+-..++=|.++|++|.|||-||++|++. ....| +.|...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----
Confidence 3567888888888877632110 03345677889999999999999999994 34334 333221
Q ss_pred HHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhC-CCceEEEEEcCCCC-----------Cchh---hhhhccccCCC--C
Q 000660 261 RLTKTILTSIVASQNVGDPSLNSLQKELSKQLS-GKKFLLVLDDVWNR-----------NYDD---WVQLRRPFEVG--A 323 (1367)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~-----------~~~~---~~~l~~~l~~~--~ 323 (1367)
++.+...++. ..+.+.+.+.-+ ..+..|.+|.+... +.+. .-+|...+..+ .
T Consensus 220 ----ElVqKYiGEG-------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 ----ELVQKYIGEG-------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ----HHHHHHhccc-------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 2222221111 123333333333 56788889988321 0011 11233333222 3
Q ss_pred CCcEEEEEcCchhHHhh--hC---CCCceeCCCCChHHHHHHHHhhhcC
Q 000660 324 PGSKIIVTTRNQEVAEI--MG---TVPSYQLKKLSDNDCLAVFAQHSLG 367 (1367)
Q Consensus 324 ~gs~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~ 367 (1367)
..-|||..|...++.+- +. -.+.++++.-+.+.-.++|+-++-.
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk 337 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK 337 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh
Confidence 35688888876555332 12 2456778755556666777766543
No 218
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.25 E-value=0.0021 Score=79.54 Aligned_cols=111 Identities=19% Similarity=0.121 Sum_probs=73.5
Q ss_pred cCCCCCCCceeEEccCCch-hhHHhhhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCcc-ccCCCCCCcc
Q 000660 1063 VGNLPPSLKSLEVLSCSKL-ESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLV-SFPEGGLPCA 1140 (1367)
Q Consensus 1063 ~~~lp~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~ 1140 (1367)
+|..-|+|+.|.+.+.... +.+.....++++|..||+|++++... .++++|++|++|.+.+-.+.. ..-..+..++
T Consensus 143 ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK 220 (699)
T ss_pred HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhccc
Confidence 3445567888877765443 33455567889999999999888764 678889999999988765443 1113456788
Q ss_pred CcceEEEeccCCCCcc------cccCCCCCCCcEEEccCCC
Q 000660 1141 KLIKFNISWCKGLEAL------PKGLHNLTSLQELTIGRGV 1175 (1367)
Q Consensus 1141 ~L~~L~ls~n~~~~~~------p~~~~~l~~L~~L~l~~n~ 1175 (1367)
+|+.||+|........ -+.-..||.|+.||.|+..
T Consensus 221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 8888888876643321 1122346777777777543
No 219
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.24 E-value=0.0061 Score=60.38 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=74.8
Q ss_pred CCccceEEcCCCCccccCccccCceecCCCCcchhhHHhhhhcCCCCCCcceeEEcccCCCCCCcccCCCCCCcccEEEE
Q 000660 595 PQRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKF 674 (1367)
Q Consensus 595 l~~Lr~L~L~~~~i~~lP~~i~~L~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L 674 (1367)
+...-.+||++|.+..++ .|..++.|..|.+.+|.++.+-..++ ..+++|++|.|
T Consensus 41 ~d~~d~iDLtdNdl~~l~------------------------~lp~l~rL~tLll~nNrIt~I~p~L~-~~~p~l~~L~L 95 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD------------------------NLPHLPRLHTLLLNNNRITRIDPDLD-TFLPNLKTLIL 95 (233)
T ss_pred ccccceecccccchhhcc------------------------cCCCccccceEEecCCcceeeccchh-hhccccceEEe
Confidence 345566777777765543 35566799999999999998877676 35889999999
Q ss_pred ecCCCC--CCCCCCCCCCCCCceeecCCCCceeeCccccCCCCCCCccccceecccccc
Q 000660 675 KNCDMC--TALPSVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQ 731 (1367)
Q Consensus 675 s~~~~~--~~lp~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~ 731 (1367)
.+|+.. ..+-++..+|.|++|.+-+|+--..-.-..| ....+|+|+.|+|....
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y---vl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY---VLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeE---EEEecCcceEeehhhhh
Confidence 998843 3555788999999999998862221111111 12346777777776644
No 220
>PRK06526 transposase; Provisional
Probab=96.17 E-value=0.0079 Score=65.09 Aligned_cols=100 Identities=22% Similarity=0.214 Sum_probs=51.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK 295 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1367)
.-+.|+|++|+|||+||..+..... +..+. +.|+ +..++..++.... . ... ....+.+. .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~----~--~~~---~~~~l~~l--~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAH----H--AGR---LQAELVKL--GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHH----h--cCc---HHHHHHHh--cc
Confidence 4688999999999999999986432 12222 2332 2334444443221 1 111 22233332 23
Q ss_pred ceEEEEEcCCCCCchhhh-h-hccccCC-CCCCcEEEEEcCch
Q 000660 296 KFLLVLDDVWNRNYDDWV-Q-LRRPFEV-GAPGSKIIVTTRNQ 335 (1367)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~-~-l~~~l~~-~~~gs~ilvTtR~~ 335 (1367)
.-+||+||+.......|. . +...+.. ...++ +|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 458999999644322222 2 2222211 12344 88888764
No 221
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.16 E-value=0.017 Score=74.39 Aligned_cols=137 Identities=17% Similarity=0.198 Sum_probs=76.9
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
..++|.+..++.+.+.+..... ..+....++.++|+.|+|||+||+.+++.. -..-...+-++.+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCccceEEEEchhccccccHH-
Confidence 5689999999999988864321 012234567789999999999999998631 1111223344444322211111
Q ss_pred HHHHHhhhcCC-CCCCChHHHHHHHHHHhCCCc-eEEEEEcCCCCCchhhhhhccccCCC-----------CCCcEEEEE
Q 000660 265 TILTSIVASQN-VGDPSLNSLQKELSKQLSGKK-FLLVLDDVWNRNYDDWVQLRRPFEVG-----------APGSKIIVT 331 (1367)
Q Consensus 265 ~il~~l~~~~~-~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvT 331 (1367)
.-++.+.. ........ +.+.++.++ -+++||++.....+.+..+...+..+ ...+-||+|
T Consensus 586 ---~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 586 ---KLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ---HhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11111111 01111122 334444455 48899999887777777777666543 234556666
Q ss_pred cCc
Q 000660 332 TRN 334 (1367)
Q Consensus 332 tR~ 334 (1367)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 664
No 222
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.04 Score=58.65 Aligned_cols=79 Identities=14% Similarity=0.269 Sum_probs=47.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCccc--ccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQV--QDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
-|+|.++|++|.|||+|++++++...+ .+.+....-+.++. -.++.+...+ ..+-...+.+.|.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE-------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE-------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh-------hhhHHHHHHHHHHHHH
Confidence 378999999999999999999987543 34454444444332 1222222211 2234455566666666
Q ss_pred CCCce--EEEEEcC
Q 000660 293 SGKKF--LLVLDDV 304 (1367)
Q Consensus 293 ~~k~~--LlVlDdv 304 (1367)
.++.. .+.+|.|
T Consensus 246 ~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEV 259 (423)
T ss_pred hCCCcEEEEEeHHH
Confidence 65543 4457777
No 223
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.16 E-value=0.15 Score=57.81 Aligned_cols=273 Identities=14% Similarity=0.105 Sum_probs=148.9
Q ss_pred cchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHH-HHHHcCcccccccceEEEEEeCCc---cCHHHHHHHHHH
Q 000660 193 RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLA-QLVYNDKQVQDHFDLKAWTCVSDD---FDVKRLTKTILT 268 (1367)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~il~ 268 (1367)
|.+..++|..||.+.. -..|.|.|+-|+||+.|+ .++..+.+. +..++|.+- -+-..+.+.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 6678899999997653 379999999999999999 777764222 445554332 122334444444
Q ss_pred Hhh-----------------------hcCCCCCCChHH-HHH-------HHHH-------------------HhC---CC
Q 000660 269 SIV-----------------------ASQNVGDPSLNS-LQK-------ELSK-------------------QLS---GK 295 (1367)
Q Consensus 269 ~l~-----------------------~~~~~~~~~~~~-~~~-------~l~~-------------------~l~---~k 295 (1367)
+++ +....-..+.+. +.. .|++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 432 211111122221 111 1111 011 12
Q ss_pred ceEEEEEcCCCCCc---hhhhhhcccc--CCCCCCcEEEEEcCchhHHhh----hC--CCCceeCCCCChHHHHHHHHhh
Q 000660 296 KFLLVLDDVWNRNY---DDWVQLRRPF--EVGAPGSKIIVTTRNQEVAEI----MG--TVPSYQLKKLSDNDCLAVFAQH 364 (1367)
Q Consensus 296 ~~LlVlDdv~~~~~---~~~~~l~~~l--~~~~~gs~ilvTtR~~~v~~~----~~--~~~~~~l~~L~~~~~~~lf~~~ 364 (1367)
|=+||+|+.-.... .-|+.+...- ....+-.+||++|-+...... +. ..+.+.|...+++.|..+...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 56899999854321 1122222111 112345689998887544433 32 3367889999999999998877
Q ss_pred hcCCc---------------------chHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCH-HHHHHHHhchhhhcccccc
Q 000660 365 SLGSH---------------------KLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDR-REWERVLCSKIWELSEKRC 422 (1367)
Q Consensus 365 ~~~~~---------------------~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~-~~w~~~l~~~~~~~~~~~~ 422 (1367)
.-... ....+-....++..||=-.-+..+++.++...++ +.-+.+.++...+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qsa~e------ 302 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQSASE------ 302 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH------
Confidence 64310 1233445667888899889999999988876554 3333444332211
Q ss_pred CchHHHHHhhh-------CCChhHHHHhhhhccCCCCcccCHHHHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhcCc
Q 000660 423 GIIPALAVSYY-------YLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSRSF 495 (1367)
Q Consensus 423 ~i~~~l~~sy~-------~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l 495 (1367)
+.+.-+. ..+=...+.+..+-..-+...++..+++.- .++.. -++..+..|.+..|
T Consensus 303 ----I~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~~----~lFk~---------~~E~~L~aLe~aeL 365 (431)
T PF10443_consen 303 ----IRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLLS----PLFKG---------NDETALRALEQAEL 365 (431)
T ss_pred ----HHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHcc----cccCC---------CChHHHHHHHHCCc
Confidence 1111111 112122334444444455566666666531 11211 02335888888888
Q ss_pred ccccc
Q 000660 496 LQQSA 500 (1367)
Q Consensus 496 l~~~~ 500 (1367)
|....
T Consensus 366 Itv~~ 370 (431)
T PF10443_consen 366 ITVTT 370 (431)
T ss_pred EEEEe
Confidence 87643
No 224
>PRK06921 hypothetical protein; Provisional
Probab=96.11 E-value=0.018 Score=62.95 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=27.2
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEe
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCV 253 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 253 (1367)
...+.++|..|+|||+||.++++... +.+-..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEH
Confidence 46789999999999999999998532 221234566654
No 225
>PRK04132 replication factor C small subunit; Provisional
Probab=96.09 E-value=0.094 Score=65.95 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=96.3
Q ss_pred CCCCcHHHHHHHHHcCccccccc-ceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEE
Q 000660 223 MGGLGKTTLAQLVYNDKQVQDHF-DLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVL 301 (1367)
Q Consensus 223 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVl 301 (1367)
|.++||||+|.+++++.- .+.+ ...+-++.|+...+. ..++++..+...... -..+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~---------------~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKPI---------------GGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc---------------CCCCCEEEEE
Confidence 679999999999998531 1112 234566777654444 334444443321110 0124579999
Q ss_pred EcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hhHHhhh-CCCCceeCCCCChHHHHHHHHhhhcC-CcchHHHHHHH
Q 000660 302 DDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QEVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLG-SHKLLEEIGKK 378 (1367)
Q Consensus 302 Ddv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~ 378 (1367)
|++..-+.+.+..++..+......+++|.+|.+ ..+...+ .-...+.+.+++.++....+...+.. ......+....
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~ 716 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQA 716 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999888777788888777654556666666555 3333222 23467999999999988877765532 11223567788
Q ss_pred HHHhcCCChHHHHHH
Q 000660 379 IVTKCDGLPLAAQTL 393 (1367)
Q Consensus 379 i~~~~~g~PLai~~~ 393 (1367)
|++.++|-+-.+..+
T Consensus 717 Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 717 ILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHcCCCHHHHHHH
Confidence 999999987554433
No 226
>PRK09183 transposase/IS protein; Provisional
Probab=96.09 E-value=0.013 Score=63.91 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
..+.|+|++|+|||+||..+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999764
No 227
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.09 E-value=0.028 Score=68.22 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=34.9
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHc
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998876432 224567899999999999999975
No 228
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.036 Score=62.23 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=47.2
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccC--HHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD--VKRLTKTILTSIVASQNVGDPSLNSLQKELSKQ 291 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 291 (1367)
+.++|+++|++|+||||++..++.... ...+ .+..+.. +.+. ..+-++...+.++.+.. ...+...+.+.+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~a-Dt~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITT-DHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEec-CCcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHH
Confidence 458999999999999999999986322 1222 2334443 2222 22222233333332211 123455566555444
Q ss_pred hCC-CceEEEEEcCCC
Q 000660 292 LSG-KKFLLVLDDVWN 306 (1367)
Q Consensus 292 l~~-k~~LlVlDdv~~ 306 (1367)
-.. +.=+|++|-...
T Consensus 316 k~~~~~DvVLIDTaGR 331 (436)
T PRK11889 316 KEEARVDYILIDTAGK 331 (436)
T ss_pred HhccCCCEEEEeCccc
Confidence 222 234778887744
No 229
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.07 E-value=0.027 Score=72.03 Aligned_cols=180 Identities=13% Similarity=0.078 Sum_probs=91.7
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVK 260 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (1367)
.++.|.+..++++.+++...-. -+-...+-+.++|++|+|||+||+.+++.. ...| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecH------
Confidence 4588999999998887642100 011234568899999999999999998742 2222 222211
Q ss_pred HHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCc-----------hhhhhhccccCCC-CCCcEE
Q 000660 261 RLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNY-----------DDWVQLRRPFEVG-APGSKI 328 (1367)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~-~~gs~i 328 (1367)
.+ .... .......+...+.......+.+|++|++..... .....+...+... ..+..+
T Consensus 247 ~i----~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 EI----MSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred HH----hccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 0000 011122233334444456678999999843210 0111222222211 223334
Q ss_pred EE-EcCchh-HHhhhC----CCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChH
Q 000660 329 IV-TTRNQE-VAEIMG----TVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPL 388 (1367)
Q Consensus 329 lv-TtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PL 388 (1367)
+| ||.... +...+. -...+.+...+.++-.+++..+.-...-........+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCH
Confidence 44 454332 222221 1245677777888888888754422111011224567777777643
No 230
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.06 E-value=0.038 Score=70.72 Aligned_cols=179 Identities=15% Similarity=0.118 Sum_probs=93.2
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVK 260 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (1367)
.++.|.+..++.+.+.+...-. -+....+-+.++|++|+|||++|+++++.. ...| +.++. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEeh----H
Confidence 4578888888777776542100 011234557889999999999999999843 2223 22221 1
Q ss_pred HHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCC--------ch----hhhhhccccCC--CCCCc
Q 000660 261 RLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRN--------YD----DWVQLRRPFEV--GAPGS 326 (1367)
Q Consensus 261 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~----~~~~l~~~l~~--~~~gs 326 (1367)
+++... -..+...+...+...-+..+.+|++|++..-. .. ....+...+.. ...+-
T Consensus 522 ----~l~~~~------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ----EILSKW------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----HHhhcc------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111111 11122223333333334677999999984210 00 01122222221 12344
Q ss_pred EEEEEcCchhHHh-hh----CCCCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCCh
Q 000660 327 KIIVTTRNQEVAE-IM----GTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLP 387 (1367)
Q Consensus 327 ~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~P 387 (1367)
-||.||...+..+ .+ .-...+.++..+.++-.++|+.+.-+.+-....-...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCC
Confidence 5666776544322 11 1235678888888888888876653311111111345667776644
No 231
>PRK12377 putative replication protein; Provisional
Probab=96.06 E-value=0.013 Score=62.77 Aligned_cols=102 Identities=21% Similarity=0.099 Sum_probs=54.9
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
...+.++|.+|+|||+||.++++... .....++++++. +++..+-.... ....... +.+.+ .
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~-----~~~~~~~----~l~~l-~ 162 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYD-----NGQSGEK----FLQEL-C 162 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHh-----ccchHHH----HHHHh-c
Confidence 35789999999999999999998542 223335666543 34444433321 1111122 22222 3
Q ss_pred CceEEEEEcCCCCCchhhhh--hccccCCC-CCCcEEEEEcCc
Q 000660 295 KKFLLVLDDVWNRNYDDWVQ--LRRPFEVG-APGSKIIVTTRN 334 (1367)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 334 (1367)
+-=|||+||+.......|.. +...+... ...--+||||-.
T Consensus 163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 45599999995543344543 22222221 122336777764
No 232
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.01 E-value=0.019 Score=61.13 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=37.0
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
...+++.|+|++|+|||++|.+++... ...-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHH
Confidence 457899999999999999999987632 22346789999876 66655443
No 233
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.00 E-value=0.025 Score=67.08 Aligned_cols=179 Identities=13% Similarity=0.043 Sum_probs=88.6
Q ss_pred CcccccchhHHHHHHHHh---cC-CCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 000660 188 AKVYGRETEKKDVVELLL---RD-DLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLT 263 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~---~~-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 263 (1367)
.++.|.+..++.+.+... .. ..-+-...+-|.++|++|+|||.+|+++++.. ...| +-+..+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~------~l- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVG------KL- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhH------Hh-
Confidence 357787666655544211 00 00012345678899999999999999999843 2222 112211 11
Q ss_pred HHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCc--------hhh----hhhccccCCCCCCcEEEEE
Q 000660 264 KTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNY--------DDW----VQLRRPFEVGAPGSKIIVT 331 (1367)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------~~~----~~l~~~l~~~~~gs~ilvT 331 (1367)
.... -..+...+.+.+...-...+++|++|++..... ..- ..+...+.....+--||.|
T Consensus 296 ---~~~~------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 296 ---FGGI------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ---cccc------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 1100 011122233333333345789999999853100 001 1112222222334456667
Q ss_pred cCchhH-Hhhh----CCCCceeCCCCChHHHHHHHHhhhcCCcch--HHHHHHHHHHhcCCCh
Q 000660 332 TRNQEV-AEIM----GTVPSYQLKKLSDNDCLAVFAQHSLGSHKL--LEEIGKKIVTKCDGLP 387 (1367)
Q Consensus 332 tR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~--~~~~~~~i~~~~~g~P 387 (1367)
|....- ...+ .-...+.++.-+.++-.++|+.+.....+. ...-...+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 765432 2111 233567888888888888888776431111 0112345566665543
No 234
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.99 E-value=0.19 Score=59.80 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=111.4
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcc------cccccceEEEEEeCCccCHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ------VQDHFDLKAWTCVSDDFDVKR 261 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~~s~~~~~~~ 261 (1367)
..+-+|+.|..+|-..+..--. ..+..+.+.|.|.+|+|||+.+..|.+... --..|+ .+.|+.-.-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 3467899999999888764322 123456999999999999999999987321 112343 34555555567899
Q ss_pred HHHHHHHHhhhcCCCCCCChHHHHHHHHHHhC-----CCceEEEEEcC---CCCCchhhhhhccccCC-CCCCcEEEEEc
Q 000660 262 LTKTILTSIVASQNVGDPSLNSLQKELSKQLS-----GKKFLLVLDDV---WNRNYDDWVQLRRPFEV-GAPGSKIIVTT 332 (1367)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv---~~~~~~~~~~l~~~l~~-~~~gs~ilvTt 332 (1367)
++..|.+++.+.... .+...+.+..+.. .+.+++++|++ |...+ +-+...|.+ ..++||++|.+
T Consensus 474 ~Y~~I~~~lsg~~~~----~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q---dVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT----WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ---DVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHhcccCccc----HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH---HHHHHHhcCCcCCCCceEEEE
Confidence 999999999876532 2233334444433 45678888887 22222 223333332 35688877655
Q ss_pred Cch--h---------HHhhhCCCCceeCCCCChHHHHHHHHhhhcC----CcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 333 RNQ--E---------VAEIMGTVPSYQLKKLSDNDCLAVFAQHSLG----SHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 333 R~~--~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~----~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
=.. + |...++ ...+...+-+.++-.++...+..+ .+...+=++++++.-.|-.-.|+.+.
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ecccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 321 1 111111 134556666666666666555433 12223334444444444444444433
No 235
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.98 E-value=0.029 Score=57.29 Aligned_cols=121 Identities=23% Similarity=0.278 Sum_probs=71.9
Q ss_pred ccCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 000660 186 DEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKT 265 (1367)
Q Consensus 186 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (1367)
+-..++|-+..++.+++--..-- .+....-|.+||.-|+|||.|++++.+. +.+..-. -|.|.+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE--------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH---------
Confidence 34568999988888876332110 1223456789999999999999999883 3333322 2222211
Q ss_pred HHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCC-CchhhhhhccccCCC---CCCcEEEEEcCc
Q 000660 266 ILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNR-NYDDWVQLRRPFEVG---APGSKIIVTTRN 334 (1367)
Q Consensus 266 il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs~ilvTtR~ 334 (1367)
+..++..+.+.++. +.+||.|..||..-+ ....++.++..+..+ .+...++..|.+
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 12223333334433 468999999998433 345677788777643 334444545544
No 236
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.97 E-value=0.0025 Score=66.06 Aligned_cols=83 Identities=18% Similarity=0.088 Sum_probs=41.7
Q ss_pred CCCCCccEEEecccCCccccCCCCCCccCcceEEEecc--CCCCcccccCCCCCCCcEEEccCCCC--CCCCcCCCCCCC
Q 000660 1113 HNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWC--KGLEALPKGLHNLTSLQELTIGRGVE--LPSLEEDGLPTN 1188 (1367)
Q Consensus 1113 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n--~~~~~~p~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~~ 1188 (1367)
..+..|+.|++.++.++.. ..+..+++|+.|.++.| ...+.++.....+++|++|++++|.. +..++....+.+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3344555555555443321 12333456666666666 44444444444556666666666642 233344445555
Q ss_pred ccEEEecCC
Q 000660 1189 LHSLDIRGN 1197 (1367)
Q Consensus 1189 L~~L~L~~n 1197 (1367)
|.+|++.+|
T Consensus 118 L~~Ldl~n~ 126 (260)
T KOG2739|consen 118 LKSLDLFNC 126 (260)
T ss_pred hhhhhcccC
Confidence 666666655
No 237
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.93 E-value=0.015 Score=63.22 Aligned_cols=57 Identities=23% Similarity=0.238 Sum_probs=40.5
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCccccc----ccceEEEEEeCCccCHHHHHHHHHHHh
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVKRLTKTILTSI 270 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (1367)
....+.=|+|.+|+|||.||.+++-...... .=..++|++....|+.+++. +|+++.
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 3457888999999999999988864322221 12468999999999988765 466543
No 238
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.03 Score=69.68 Aligned_cols=136 Identities=15% Similarity=0.172 Sum_probs=82.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCC--CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDG--GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKT 265 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (1367)
..++|.++.+..|.+.+......... +...+.+.|+.|+|||-||++++. .+-+..+..+-++.|. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 45889999999999988865531112 456778999999999999999986 3333344455555443 222
Q ss_pred HHHHhhhcCCCCCCChHHHHHHHHHHhCCCce-EEEEEcCCCCCchhhhhhccccCCC----------CCCcEEEEEcCc
Q 000660 266 ILTSIVASQNVGDPSLNSLQKELSKQLSGKKF-LLVLDDVWNRNYDDWVQLRRPFEVG----------APGSKIIVTTRN 334 (1367)
Q Consensus 266 il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~----------~~gs~ilvTtR~ 334 (1367)
+.+-++.+.. .--.+....+.+.+++++| +|.||||...+.+....+...+..+ ..+..|+|-|.+
T Consensus 633 vskligsp~g---yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn 709 (898)
T KOG1051|consen 633 VSKLIGSPPG---YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSN 709 (898)
T ss_pred hhhccCCCcc---cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecc
Confidence 2222222211 1112233467777787887 6679999777666665554444332 123456666665
Q ss_pred h
Q 000660 335 Q 335 (1367)
Q Consensus 335 ~ 335 (1367)
.
T Consensus 710 ~ 710 (898)
T KOG1051|consen 710 V 710 (898)
T ss_pred c
Confidence 3
No 239
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.14 Score=59.65 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=65.1
Q ss_pred CcccccchhHHHHHHHHhcCCCC------CCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLS------NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKR 261 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (1367)
.++=|.+..+.++.+++..-... +-...+=|.++|++|.|||.||+++++...+ .| +.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ce-----Eeecch-----
Confidence 46778998888888877642110 1234566889999999999999999985433 23 223221
Q ss_pred HHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCC
Q 000660 262 LTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWN 306 (1367)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 306 (1367)
+|+..+ ...+.+.+.+...+....-++++++|++.-
T Consensus 258 ---eivSGv------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 222222 234455666666677778899999999854
No 240
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.84 E-value=0.0046 Score=76.55 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=71.1
Q ss_pred cCCcccEEeeccccCCCCCCCCcccccccc-CCCccceEEcCCCCccccCccccCceecCCCCcchhhHHhhhhcCCCCC
Q 000660 564 DIQHLRTFLPVMLTNSGPGYLAPSILPKLL-KPQRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHT 642 (1367)
Q Consensus 564 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lP~~i~~L~~~~~~~~~~~~~~~~l~~L~~~~ 642 (1367)
.++.||+|..-+.. +....+..++ ++++|+.||+|+++++.+ .+|++|+
T Consensus 146 ~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk----------------------- 195 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK----------------------- 195 (699)
T ss_pred hCcccceEEecCce------ecchhHHHHhhccCccceeecCCCCccCc-HHHhccc-----------------------
Confidence 46888888543221 1222345566 899999999999999888 6677666
Q ss_pred CcceeEEcccCCCCCCcccCCCCCCcccEEEEecCCCCCCC--C-----CCCCCCCCCceeecCCC
Q 000660 643 NLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTAL--P-----SVGQLPSLKHLVVCGMS 701 (1367)
Q Consensus 643 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~Ls~~~~~~~l--p-----~l~~L~~L~~L~l~~~~ 701 (1367)
||+.|.+++-.....+.+..-..|++|+.||+|........ . .-..||+||.||.++..
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 88888887766655444333234888888888875532211 1 12347888888888654
No 241
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.83 E-value=0.006 Score=58.24 Aligned_cols=22 Identities=45% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
||.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 242
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.82 E-value=0.01 Score=66.71 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=53.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK 295 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1367)
.-+.++|..|+|||+||.++++... ...+ .++++++. +++..+...-. . ...+... .+ +.+.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~g~-~V~y~t~~------~l~~~l~~~~~-~---~~~~~~~---~~-~~l~~- 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DRGK-SVIYRTAD------ELIEILREIRF-N---NDKELEE---VY-DLLIN- 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HCCC-eEEEEEHH------HHHHHHHHHHh-c---cchhHHH---HH-HHhcc-
Confidence 5689999999999999999998532 2222 45565542 33333322111 1 1111111 12 22221
Q ss_pred ceEEEEEcCCCCCchhhhh--hccccCC-CCCCcEEEEEcCc
Q 000660 296 KFLLVLDDVWNRNYDDWVQ--LRRPFEV-GAPGSKIIVTTRN 334 (1367)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~ 334 (1367)
-=|||+||+..+....|.. +...+.. ...+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2389999996654334432 2222221 1234568888875
No 243
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.82 E-value=0.033 Score=60.59 Aligned_cols=137 Identities=20% Similarity=0.308 Sum_probs=74.2
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcC-cccccccceEEE----EEeCCcc-------
Q 000660 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND-KQVQDHFDLKAW----TCVSDDF------- 257 (1367)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~w----v~~s~~~------- 257 (1367)
+-+|..+..--.++|+.+ ....|.+.|.+|.|||.||-+..=. ...++.|...+- +.+.++.
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 445677777777888654 5789999999999999988765421 122344443331 2333321
Q ss_pred --CHHHHHHHHHHHhhhcCCCCCCChHHHHHHHH---------HHhCCC---ceEEEEEcCCCCCchhhhhhccccCCCC
Q 000660 258 --DVKRLTKTILTSIVASQNVGDPSLNSLQKELS---------KQLSGK---KFLLVLDDVWNRNYDDWVQLRRPFEVGA 323 (1367)
Q Consensus 258 --~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~---------~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~ 323 (1367)
-+.-.++.|...+..-..........+...+. .+++++ +-+||+|...+-++.+... .+...+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikT---iltR~G 376 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKT---ILTRAG 376 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHH---HHHhcc
Confidence 11122333332222111101111112222211 233444 4589999998876554444 445568
Q ss_pred CCcEEEEEcCch
Q 000660 324 PGSKIIVTTRNQ 335 (1367)
Q Consensus 324 ~gs~ilvTtR~~ 335 (1367)
.||||+.|---.
T Consensus 377 ~GsKIVl~gd~a 388 (436)
T COG1875 377 EGSKIVLTGDPA 388 (436)
T ss_pred CCCEEEEcCCHH
Confidence 899999887543
No 244
>PRK06696 uridine kinase; Validated
Probab=95.77 E-value=0.011 Score=63.26 Aligned_cols=43 Identities=28% Similarity=0.261 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 193 RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 193 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
|.+-+++|.+.+... ..++..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 566778888888653 2346789999999999999999999873
No 245
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.75 E-value=0.026 Score=61.23 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=48.0
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
..-+.++|.+|+|||.||.++.++.. +..+ .+.++++ .++..++...... . .....+.+.++
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~-----~----~~~~~l~~~l~- 166 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDE-----G----RLEEKLLRELK- 166 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhc-----C----chHHHHHHHhh-
Confidence 45688999999999999999999643 3323 3445543 4455555444432 1 11222222222
Q ss_pred CceEEEEEcCCCCCchhhh
Q 000660 295 KKFLLVLDDVWNRNYDDWV 313 (1367)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~ 313 (1367)
+-=||||||+.-.....|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2238999999665444554
No 246
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.74 E-value=0.059 Score=58.13 Aligned_cols=92 Identities=16% Similarity=0.093 Sum_probs=55.0
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCccccc----ccceEEEEEeCCccCHHHHHHHHHHHhhhcCC--------CCCCC
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVKRLTKTILTSIVASQN--------VGDPS 280 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~--------~~~~~ 280 (1367)
....++.|+|.+|+|||++|.+++....... .=..++|++....++..++. ++.+....... ....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 4568999999999999999999875321111 01457899988777765543 33333221100 01234
Q ss_pred hHHHHHHHHHHhC---C-CceEEEEEcCC
Q 000660 281 LNSLQKELSKQLS---G-KKFLLVLDDVW 305 (1367)
Q Consensus 281 ~~~~~~~l~~~l~---~-k~~LlVlDdv~ 305 (1367)
.+++...+.+..+ . +.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4555555554432 3 44488999873
No 247
>PRK04296 thymidine kinase; Provisional
Probab=95.72 E-value=0.016 Score=60.18 Aligned_cols=114 Identities=14% Similarity=0.025 Sum_probs=61.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCC-CCCChHHHHHHHHHHhCC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNV-GDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~ 294 (1367)
.++.|+|..|.||||+|..++... ..+-..++.+. ..++.+.....++++++..... .....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 577899999999999998888643 22222233331 1122222233444544422110 12234455555555 233
Q ss_pred CceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchh
Q 000660 295 KKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQE 336 (1367)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 336 (1367)
+.-+||+|.+.--+.++..++...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4459999999543222222333332 246788999998843
No 248
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.05 Score=62.64 Aligned_cols=142 Identities=14% Similarity=0.115 Sum_probs=81.1
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccccc-------------------ccceEE
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQD-------------------HFDLKA 249 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 249 (1367)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+...-.. ..+...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 36777888888888886432 1223588999999999999999986422111 112233
Q ss_pred EEEeCCccC---HHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCc
Q 000660 250 WTCVSDDFD---VKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGS 326 (1367)
Q Consensus 250 wv~~s~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 326 (1367)
.+..++... ..+..+++.+....... .++.-++++|++...+.+.-..+...+......+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 343333322 12222222222211100 2566799999997766666666666666666777
Q ss_pred EEEEEcCch-hHHhhh-CCCCceeCCC
Q 000660 327 KIIVTTRNQ-EVAEIM-GTVPSYQLKK 351 (1367)
Q Consensus 327 ~ilvTtR~~-~v~~~~-~~~~~~~l~~ 351 (1367)
++|++|... .+...+ .....+++.+
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCC
Confidence 888888742 332222 1234566665
No 249
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.71 E-value=0.072 Score=57.34 Aligned_cols=172 Identities=24% Similarity=0.259 Sum_probs=93.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcC-cccccccceEEEEEeCCccCH-HHHHHHH
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND-KQVQDHFDLKAWTCVSDDFDV-KRLTKTI 266 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~s~~~~~-~~~~~~i 266 (1367)
.++|-.++..++-.++..... -+...-+.|+|+.|.|||+|...+..+ .++..+| .-|........ +-.++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 478988899998888865421 123456789999999999998888765 1233333 33444443322 2245555
Q ss_pred HHHhhhcCCC---CCCChHHHHHHHHHHhC------CCceEEEEEcCCCCCch-hhhhhcccc---C-CCCCCcEEEEEc
Q 000660 267 LTSIVASQNV---GDPSLNSLQKELSKQLS------GKKFLLVLDDVWNRNYD-DWVQLRRPF---E-VGAPGSKIIVTT 332 (1367)
Q Consensus 267 l~~l~~~~~~---~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~-~~~~l~~~l---~-~~~~gs~ilvTt 332 (1367)
..++..+-.. ...+..+....+-+.|+ +-++.+|+|..+-.-.. ...-+...| . ...+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5555433221 11222222333333333 23578888877322110 011111111 1 134567788899
Q ss_pred Cchh-------HHhhhCCCCceeCCCCChHHHHHHHHhhh
Q 000660 333 RNQE-------VAEIMGTVPSYQLKKLSDNDCLAVFAQHS 365 (1367)
Q Consensus 333 R~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1367)
|-.- |-..+....++-++.++-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9642 22222222355667778888888777654
No 250
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.71 E-value=0.00069 Score=62.18 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=63.3
Q ss_pred HHhhhccCCccceeeecccCCcccCcccc-CCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCC
Q 000660 1084 IAERLDNNTSLEIIRIDFCKNLKILPSGL-HNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHN 1162 (1367)
Q Consensus 1084 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~ 1162 (1367)
.+..+.....|+..+|++|.+.. +|..| ..++.+++|++.+|.+ ..+|..+..++.|+.|+++.|++. ..|..+..
T Consensus 45 avy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~ 121 (177)
T KOG4579|consen 45 AVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLN-AEPRVIAP 121 (177)
T ss_pred HHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCccc-cchHHHHH
Confidence 34455566778888888888776 44444 4456788888888754 456777778888888888888844 45566666
Q ss_pred CCCCcEEEccCCCC
Q 000660 1163 LTSLQELTIGRGVE 1176 (1367)
Q Consensus 1163 l~~L~~L~l~~n~~ 1176 (1367)
|.+|-.|+..+|..
T Consensus 122 L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 122 LIKLDMLDSPENAR 135 (177)
T ss_pred HHhHHHhcCCCCcc
Confidence 77777777777753
No 251
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.69 E-value=0.021 Score=63.45 Aligned_cols=87 Identities=18% Similarity=0.073 Sum_probs=55.7
Q ss_pred CCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCC----CCCCChHHHHHH
Q 000660 212 DGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQN----VGDPSLNSLQKE 287 (1367)
Q Consensus 212 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~ 287 (1367)
-+..+++-|+|++|+||||||.+++... ...-..++|++....++.. .+++++.... ....+.++....
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i 124 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEI 124 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHH
Confidence 3467899999999999999999987532 2233567899887776653 2333322110 023345566666
Q ss_pred HHHHhCC-CceEEEEEcCC
Q 000660 288 LSKQLSG-KKFLLVLDDVW 305 (1367)
Q Consensus 288 l~~~l~~-k~~LlVlDdv~ 305 (1367)
+...++. .--+||+|.|-
T Consensus 125 ~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHhccCCCEEEEcchH
Confidence 6555544 45599999983
No 252
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.69 E-value=0.022 Score=58.57 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=27.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEE
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWT 251 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 251 (1367)
+..+|.+.|+.|+||||+|+.+++. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4569999999999999999999973 33344445554
No 253
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.68 E-value=0.025 Score=56.92 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=44.3
Q ss_pred EEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhc--CCCCCCChHHHHHHHHHHhCCC
Q 000660 218 IPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVAS--QNVGDPSLNSLQKELSKQLSGK 295 (1367)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~--~~~~~~~~~~~~~~l~~~l~~k 295 (1367)
+.|.|.+|+|||++|.++... .-..++++.-...++.+ +.+.|..-.... ..........+.+.+.+. + +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 578999999999999998753 22356777777766653 333333321111 111112222333333221 2 2
Q ss_pred ceEEEEEcC
Q 000660 296 KFLLVLDDV 304 (1367)
Q Consensus 296 ~~LlVlDdv 304 (1367)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347999987
No 254
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.67 E-value=0.022 Score=63.21 Aligned_cols=87 Identities=18% Similarity=0.094 Sum_probs=55.3
Q ss_pred CCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCC----CCCCChHHHHHH
Q 000660 212 DGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQN----VGDPSLNSLQKE 287 (1367)
Q Consensus 212 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~ 287 (1367)
-+..+++-|+|++|+||||||.+++... ...=..++|++..+.++.. .+++++.... ......++....
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 3567899999999999999999887532 2223457788877666553 2333332110 123345555666
Q ss_pred HHHHhC-CCceEEEEEcCC
Q 000660 288 LSKQLS-GKKFLLVLDDVW 305 (1367)
Q Consensus 288 l~~~l~-~k~~LlVlDdv~ 305 (1367)
+...++ +..-+||+|.|-
T Consensus 125 ~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHhhccCCcEEEEcchh
Confidence 655554 345699999983
No 255
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.64 E-value=0.14 Score=57.83 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCch-hHHhhh-CCCCceeCCCCChHHHHHHHHhhhcCCcchH
Q 000660 295 KKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQ-EVAEIM-GTVPSYQLKKLSDNDCLAVFAQHSLGSHKLL 372 (1367)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 372 (1367)
++=++|+|++..-+......+...+.....+..+|++|.+. .+...+ .....+.+.+++.+++.+.+..... ....
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--~~~~ 190 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGV--AEPE 190 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCC--CcHH
Confidence 34455668886666555555655554434456666677664 343332 2346788999999999888865421 1111
Q ss_pred HHHHHHHHHhcCCChHH
Q 000660 373 EEIGKKIVTKCDGLPLA 389 (1367)
Q Consensus 373 ~~~~~~i~~~~~g~PLa 389 (1367)
..+..++|-|+.
T Consensus 191 -----~~l~~~~g~p~~ 202 (325)
T PRK08699 191 -----ERLAFHSGAPLF 202 (325)
T ss_pred -----HHHHHhCCChhh
Confidence 113468898864
No 256
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.61 E-value=0.029 Score=60.43 Aligned_cols=89 Identities=20% Similarity=0.309 Sum_probs=52.4
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCccccccc-ceEEEEEeCCcc-CHHHHHHHHHHHhhhcC------CCCCCChH---
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF-DLKAWTCVSDDF-DVKRLTKTILTSIVASQ------NVGDPSLN--- 282 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~-~~~~~~~~il~~l~~~~------~~~~~~~~--- 282 (1367)
+...++|+|..|+||||||+.+++. ++.+| +.++++-+.+.. .+.++.+++.+.-.... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3467899999999999999999984 33344 445666666554 34455555544211110 00111111
Q ss_pred --HHHHHHHHHh--C-CCceEEEEEcC
Q 000660 283 --SLQKELSKQL--S-GKKFLLVLDDV 304 (1367)
Q Consensus 283 --~~~~~l~~~l--~-~k~~LlVlDdv 304 (1367)
...-.+.+++ + ++.+|+|+||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122234444 3 89999999999
No 257
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0059 Score=37.46 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.1
Q ss_pred ccceEEcCCCCccccCccccCc
Q 000660 597 RLRAFSLRGYHIFELPDSVGDL 618 (1367)
Q Consensus 597 ~Lr~L~L~~~~i~~lP~~i~~L 618 (1367)
+|++|||++|.++.+|+++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999988764
No 258
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.57 E-value=0.037 Score=69.42 Aligned_cols=121 Identities=13% Similarity=0.170 Sum_probs=68.4
Q ss_pred CcccccchhHHHHHHHHhcCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
..++|.++.++.|.+.+..... ........+.++|+.|+|||++|+.++... .. ..+.++++...+...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhccccc---
Confidence 3589999999999988874211 011234578899999999999999998743 22 233445443221111
Q ss_pred HHHHHhhhcCCCCCCChHHHHHHHHHHhCCC-ceEEEEEcCCCCCchhhhhhccccC
Q 000660 265 TILTSIVASQNVGDPSLNSLQKELSKQLSGK-KFLLVLDDVWNRNYDDWVQLRRPFE 320 (1367)
Q Consensus 265 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~ 320 (1367)
...+.+... .....+ ....+.+.++.+ ..+|+||++.....+.+..+...+.
T Consensus 530 --~~~LiG~~~-gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 --VSRLIGAPP-GYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred --HHHHcCCCC-Cccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 122222111 100000 011222333333 4599999998777677777766554
No 259
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.53 E-value=0.0056 Score=60.11 Aligned_cols=87 Identities=22% Similarity=0.126 Sum_probs=46.9
Q ss_pred EEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCce
Q 000660 218 IPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKF 297 (1367)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~ 297 (1367)
|.++|++|+|||+||+.++... .. ...-+.++...+..++....--. .... ......+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~---~~~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--GR---PVIRINCSSDTTEEDLIGSYDPS-NGQF---EFKDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--TC---EEEEEE-TTTSTHHHHHCEEET--TTTT---CEEE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--hc---ceEEEEeccccccccceeeeeec-cccc---ccccccccccc-----ccee
Confidence 5789999999999999999732 11 23346777777777655322111 0000 00000000001 1788
Q ss_pred EEEEEcCCCCCchhhhhhccc
Q 000660 298 LLVLDDVWNRNYDDWVQLRRP 318 (1367)
Q Consensus 298 LlVlDdv~~~~~~~~~~l~~~ 318 (1367)
++|||++.......+..+...
T Consensus 68 il~lDEin~a~~~v~~~L~~l 88 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSL 88 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHH
T ss_pred EEEECCcccCCHHHHHHHHHH
Confidence 999999976554445554433
No 260
>PHA02244 ATPase-like protein
Probab=95.53 E-value=0.097 Score=58.60 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
-|.|+|++|+|||++|++++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999974
No 261
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.51 E-value=0.01 Score=59.88 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=42.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcC--CCCCCChHHHHHHHHHHhCC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQ--NVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~--~~~~~~~~~~~~~l~~~l~~ 294 (1367)
++.|.|.+|+||||+|..+...... ..+++.....++ .+..+.|........ .........+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6889999999999999999863211 133444333333 334444433322211 11111122344445443333
Q ss_pred CceEEEEEcC
Q 000660 295 KKFLLVLDDV 304 (1367)
Q Consensus 295 k~~LlVlDdv 304 (1367)
.-++|+|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 237888987
No 262
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.45 E-value=0.01 Score=69.42 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=39.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHc
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+++|.++.+++|++.|.......+.+.+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999998432111234568999999999999999999987
No 263
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.44 E-value=0.038 Score=62.27 Aligned_cols=59 Identities=19% Similarity=0.124 Sum_probs=42.6
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCccc----ccccceEEEEEeCCccCHHHHHHHHHHHhhh
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQV----QDHFDLKAWTCVSDDFDVKRLTKTILTSIVA 272 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 272 (1367)
...++.-|+|.+|+|||+|+.+++-.... .+.-..++|++....|+.+++.+ ++++++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45688889999999999999988632222 11224689999999999888654 5555543
No 264
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.44 E-value=0.038 Score=61.84 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=41.9
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccc----cccceEEEEEeCCccCHHHHHHHHHHHhh
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----DHFDLKAWTCVSDDFDVKRLTKTILTSIV 271 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 271 (1367)
...+++-|+|.+|+|||++|.+++-..... ..=..++|++....|+.+++.+ ++++++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 456889999999999999998876322221 1124689999999898888654 556554
No 265
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.41 E-value=0.059 Score=57.67 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=32.2
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccC
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD 258 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 258 (1367)
...+++.|.|.+|+||||+|.+++... ...=..++|++....++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 457899999999999999999988632 12223567887655543
No 266
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.39 E-value=0.00068 Score=62.22 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=71.6
Q ss_pred CccceeeecccCCcc--cCccccCCCCCccEEEecccCCccccCCCCC-CccCcceEEEeccCCCCcccccCCCCCCCcE
Q 000660 1092 TSLEIIRIDFCKNLK--ILPSGLHNLRQLQEIEIWECKNLVSFPEGGL-PCAKLIKFNISWCKGLEALPKGLHNLTSLQE 1168 (1367)
Q Consensus 1092 ~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~ 1168 (1367)
..+..++|+.|.+.. ..+..+.....|...+|++|.+. .+|..+. ..+.++.|++++|.+ ..+|..+..++.|+.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhh
Confidence 456678888887763 22344556677888899998654 4554443 356788999999984 466777889999999
Q ss_pred EEccCCCCCCCCcCCCCCCCccEEEecCC
Q 000660 1169 LTIGRGVELPSLEEDGLPTNLHSLDIRGN 1197 (1367)
Q Consensus 1169 L~l~~n~~~~~~~~~~~~~~L~~L~L~~n 1197 (1367)
|+++.|+....+..+..+.+|-.|+.-+|
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cccccCccccchHHHHHHHhHHHhcCCCC
Confidence 99999876555443334556666666665
No 267
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.34 E-value=0.0018 Score=79.60 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=22.7
Q ss_pred CCCCccEEEEccCCCcccc---CCCCCcccccEEEeccC
Q 000660 922 SLSSLREIEIYQCSSLVSF---PEVALPSKLKTIHISSC 957 (1367)
Q Consensus 922 ~l~~L~~L~L~~~~~l~~~---~~~~~l~~L~~L~l~~~ 957 (1367)
.+++|+.|.+.+|..+... +.....+.|+.|++++|
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 3677788888777665541 23445667777777663
No 268
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.34 E-value=0.065 Score=55.56 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=48.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHHhhhcCC--CCCCCh-HHHHHHHHH
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD-DFDVKRLTKTILTSIVASQN--VGDPSL-NSLQKELSK 290 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~--~~~~~~-~~~~~~l~~ 290 (1367)
++|+.++|+.|+||||.+.+++.....+ =..+..++... .....+-++..++.++.+.. ....+. +.+.+.+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3799999999999998777776533222 22345555432 23445566777777765421 012222 223333433
Q ss_pred HhCCCc-eEEEEEcCCC
Q 000660 291 QLSGKK-FLLVLDDVWN 306 (1367)
Q Consensus 291 ~l~~k~-~LlVlDdv~~ 306 (1367)
. +.++ =+|++|=...
T Consensus 79 ~-~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 79 F-RKKGYDLVLIDTAGR 94 (196)
T ss_dssp H-HHTTSSEEEEEE-SS
T ss_pred H-hhcCCCEEEEecCCc
Confidence 3 3333 3777887643
No 269
>PRK09354 recA recombinase A; Provisional
Probab=95.29 E-value=0.049 Score=61.07 Aligned_cols=87 Identities=17% Similarity=0.074 Sum_probs=56.8
Q ss_pred CCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCC----CCCCChHHHHHH
Q 000660 212 DGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQN----VGDPSLNSLQKE 287 (1367)
Q Consensus 212 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~ 287 (1367)
-+.-+++-|+|++|+||||||.+++... ...=..++|++....++.. .+++++.... ....+.++....
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 3567899999999999999999987532 2233567899888777753 2334332110 022345566666
Q ss_pred HHHHhCC-CceEEEEEcCC
Q 000660 288 LSKQLSG-KKFLLVLDDVW 305 (1367)
Q Consensus 288 l~~~l~~-k~~LlVlDdv~ 305 (1367)
+...++. +.-+||+|-|-
T Consensus 130 ~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHhhcCCCCEEEEeChh
Confidence 6655543 45599999984
No 270
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.23 E-value=0.22 Score=57.33 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=32.8
Q ss_pred chhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCc
Q 000660 194 ETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 239 (1367)
Q Consensus 194 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (1367)
+.-.+.+.+.+... ......+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~---~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNP---DSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhcc---CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456677777654 22467899999999999999999998743
No 271
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.23 E-value=0.052 Score=64.38 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=53.3
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
+.-+++.++|++|+||||||.-|+.... | .++=|+.|++-+...+-..|...+......+.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------- 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------- 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc--------------
Confidence 4568999999999999999999987533 2 25667888887777766666655543322100
Q ss_pred CCCceEEEEEcCCCC
Q 000660 293 SGKKFLLVLDDVWNR 307 (1367)
Q Consensus 293 ~~k~~LlVlDdv~~~ 307 (1367)
.+++.-+|+|.+.-.
T Consensus 385 dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCcceEEEecccCC
Confidence 157778899988554
No 272
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.22 E-value=0.015 Score=56.94 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=61.9
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccc-ccccceEEEEEeCCccCHHHHHHHHHHH
Q 000660 191 YGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-QDHFDLKAWTCVSDDFDVKRLTKTILTS 269 (1367)
Q Consensus 191 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~il~~ 269 (1367)
||+-..++++.+.+..-. ....-|.|.|..|+||+++|+.++..... ...|... .+..
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh--------------
Confidence 466666777766665321 12355789999999999999999874322 1222211 0000
Q ss_pred hhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCC-CCCcEEEEEcCch
Q 000660 270 IVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVG-APGSKIIVTTRNQ 335 (1367)
Q Consensus 270 l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~ 335 (1367)
.. .+.+.+ -+.--++++|+..-+.+....+...+... ....|+|.||+..
T Consensus 60 ---------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 ---------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 00 111111 14556889999777666666676666532 5678999999864
No 273
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.21 E-value=0.15 Score=64.86 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=73.0
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
..++|+...++.+.+.+..-. ..-.-|.|+|..|+|||++|+.+++..... . ...+.+++..-. ...+-..++
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-~-~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGRN-N-RRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCCC-C-CCeEEEecccCC-hhHhhhhhc
Confidence 368999988888877665321 122467899999999999999998743211 1 123445554322 111111221
Q ss_pred HHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCC-----------CCCcEEEEEcCch
Q 000660 268 TSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVG-----------APGSKIIVTTRNQ 335 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~~ 335 (1367)
....+... . . .......+. ....=.|+||+|..-.......+...+..+ ..+.|||.||...
T Consensus 449 g~~~~~~~-g-~-~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFT-G-A-SAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Cccccccc-c-c-ccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 11110000 0 0 001111121 123357999999776666666666555332 1345898888653
No 274
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.036 Score=56.92 Aligned_cols=79 Identities=19% Similarity=0.152 Sum_probs=43.3
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHH
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVAS-QNVGDPSLNSLQKELSKQ 291 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~-~~~~~~~~~~~~~~l~~~ 291 (1367)
.++.+|+|.|.+|+||||+|+.++.. ++... ..-++.. ++-...-.....+..... ......+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~D-~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISLD-DYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeecc-ccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 35689999999999999999999983 33221 1111111 111000000111111100 111445677788888888
Q ss_pred hCCCc
Q 000660 292 LSGKK 296 (1367)
Q Consensus 292 l~~k~ 296 (1367)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 275
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.33 Score=59.43 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=99.3
Q ss_pred Ccccccchh---HHHHHHHHhcCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 000660 188 AKVYGRETE---KKDVVELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKR 261 (1367)
Q Consensus 188 ~~~vGr~~~---~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (1367)
.++.|-++. ++++++.|..++. -+..-++=+.++|++|+|||-||++++....|- ++.+|..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH-----
Confidence 457787654 5555666654321 022235667899999999999999999865442 2344432
Q ss_pred HHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCC---------------chhhhhhccccCCCCC--
Q 000660 262 LTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRN---------------YDDWVQLRRPFEVGAP-- 324 (1367)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~-- 324 (1367)
+.++.+.+.. .. .+.+.....=...++.|.+|++.... .....++...+.....
T Consensus 379 ---EFvE~~~g~~---as---rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGVG---AS---RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhcccc---hH---HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 2222222111 11 11122222223567788888773211 0123333333322222
Q ss_pred CcEEEEEcCchhHHhh--hC---CCCceeCCCCChHHHHHHHHhhhcCC--cchHHHHHHHHHHhcCCChHHH
Q 000660 325 GSKIIVTTRNQEVAEI--MG---TVPSYQLKKLSDNDCLAVFAQHSLGS--HKLLEEIGKKIVTKCDGLPLAA 390 (1367)
Q Consensus 325 gs~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~i~~~~~g~PLai 390 (1367)
+--++-+|+..++.+. +. -.+.+.++.-+...-.++|.-++-.. ..+..++++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 2334446665555332 22 34667888888888999999887652 234556666 888888877553
No 276
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.15 E-value=0.072 Score=59.10 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=45.0
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccc-cccceEEEEEeCCccC--HHHHHHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQ-DHFDLKAWTCVSDDFD--VKRLTKTILTSIVASQNVGDPSLNSLQKELSK 290 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 290 (1367)
+.+++.|+|++|+||||++..++.....+ +.+ .+..|+... +. ....+....+.++.... ...+...+...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~-~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDT-YRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCc-cchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHH
Confidence 46799999999999999999887643222 122 344454432 22 12222222233322221 22344455555544
Q ss_pred HhCCCceEEEEEcC
Q 000660 291 QLSGKKFLLVLDDV 304 (1367)
Q Consensus 291 ~l~~k~~LlVlDdv 304 (1367)
. .+ .=+|++|..
T Consensus 270 ~-~~-~d~vliDt~ 281 (282)
T TIGR03499 270 L-RD-KDLILIDTA 281 (282)
T ss_pred c-cC-CCEEEEeCC
Confidence 3 33 347777754
No 277
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.14 E-value=0.0032 Score=77.44 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=17.1
Q ss_pred CCceeEEccCCchhh--HHhhhccCCccceeeecc
Q 000660 1069 SLKSLEVLSCSKLES--IAERLDNNTSLEIIRIDF 1101 (1367)
Q Consensus 1069 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~ 1101 (1367)
.++.|.+..+..+.. +-.....++.|+.|++++
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 455555555554443 334445555566666554
No 278
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.14 E-value=0.066 Score=60.20 Aligned_cols=57 Identities=21% Similarity=0.129 Sum_probs=39.8
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccc---c-ccceEEEEEeCCccCHHHHHHHHHHHh
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ---D-HFDLKAWTCVSDDFDVKRLTKTILTSI 270 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (1367)
....++.|+|.+|+||||||..++...... + .-..++|++....++..++ .++++..
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 457899999999999999999887422211 1 1235789998888887763 3444444
No 279
>PRK08233 hypothetical protein; Provisional
Probab=95.08 E-value=0.062 Score=55.67 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999864
No 280
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.05 E-value=0.029 Score=58.69 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=59.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK 295 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1367)
.+|.|+|+.|.||||++..+... ........++.-. +.. +...... ..+..... ...+.....+.++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e-~~~--E~~~~~~-~~~i~q~~-vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIE-DPI--EFVHESK-RSLINQRE-VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEc-CCc--cccccCc-cceeeecc-cCCCccCHHHHHHHHhcCC
Confidence 47899999999999999987763 2222333444322 111 1100000 00000000 0112234556677778777
Q ss_pred ceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHHh
Q 000660 296 KFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAE 339 (1367)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 339 (1367)
.=.+++|.+-+. +.+....... ..|-.|+.|+....+..
T Consensus 75 pd~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 779999999543 3333322222 34556888887665543
No 281
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.03 E-value=0.066 Score=60.83 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=41.0
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccc----cceEEEEEeCCccCHHHHHHHHHHHh
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH----FDLKAWTCVSDDFDVKRLTKTILTSI 270 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~il~~l 270 (1367)
....++-|+|++|+|||++|.+++........ =..++||+....++..++.+ +++.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 45688999999999999999999754222111 14789999998888877643 44444
No 282
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.01 E-value=0.27 Score=59.91 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=74.3
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTI 266 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (1367)
...++|+...++++.+.+..-.. .-.-|.|+|..|+|||++|+.+++...-. -...+.|++..-.+ ..+..++
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCCh-HHHHHHh
Confidence 35689999999998888765321 23457799999999999999999743211 11234556554332 1111122
Q ss_pred HHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCC-----------CCcEEEEEcCch
Q 000660 267 LTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGA-----------PGSKIIVTTRNQ 335 (1367)
Q Consensus 267 l~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 335 (1367)
+....+... ... ......+. ....=.|+||+|..-....+..+...+..+. ...|||.||...
T Consensus 259 fG~~~g~~~-ga~--~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 FGHVKGAFT-GAI--SNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cCccccccC-CCc--ccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 111110000 000 00000111 1122347899997776666666666554321 245888888653
No 283
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.99 E-value=0.091 Score=56.98 Aligned_cols=91 Identities=21% Similarity=0.139 Sum_probs=57.3
Q ss_pred CCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHH-hhhcCCCCCCChHH---HHH
Q 000660 211 NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTS-IVASQNVGDPSLNS---LQK 286 (1367)
Q Consensus 211 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~-l~~~~~~~~~~~~~---~~~ 286 (1367)
+-+..+++=|+|+.|.||||+|.+++-. .+..-..++|++.-+.++++++. ++... +..-......+.++ +.+
T Consensus 56 Gl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~ 132 (279)
T COG0468 56 GLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAE 132 (279)
T ss_pred CcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHH
Confidence 3456788999999999999999998753 33333478999999999987653 33333 21111112233333 333
Q ss_pred HHHHHhCCCceEEEEEcC
Q 000660 287 ELSKQLSGKKFLLVLDDV 304 (1367)
Q Consensus 287 ~l~~~l~~k~~LlVlDdv 304 (1367)
.+......+--|+|+|.|
T Consensus 133 ~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 133 KLARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHHhccCCCCEEEEecC
Confidence 333333333569999998
No 284
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.97 E-value=0.26 Score=54.60 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=36.9
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH
Q 000660 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVK 260 (1367)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 260 (1367)
++=..+....+..++... +.|.|.|.+|+||||+|+.++.. .... .+.|.++...+..
T Consensus 47 y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~ 104 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRI 104 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChh
Confidence 333444556677776432 45889999999999999999873 2222 2345555554443
No 285
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.12 Score=59.02 Aligned_cols=54 Identities=28% Similarity=0.305 Sum_probs=38.1
Q ss_pred Ccccccc---hhHHHHHHHHhcCCCC---CCCCceEEEEeCCCCCcHHHHHHHHHcCccc
Q 000660 188 AKVYGRE---TEKKDVVELLLRDDLS---NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV 241 (1367)
Q Consensus 188 ~~~vGr~---~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 241 (1367)
.++-|-| .|+++|++.|.+...- ++.=++=|.++|++|.|||-||++|+....|
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 3456665 5677888888654210 2223566789999999999999999986544
No 286
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.93 E-value=0.01 Score=61.69 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=52.9
Q ss_pred CCccceeeecccCCcccCccccCCCCCccEEEeccc--CCccccCCCCCCccCcceEEEeccCCCC--cccccCCCCCCC
Q 000660 1091 NTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWEC--KNLVSFPEGGLPCAKLIKFNISWCKGLE--ALPKGLHNLTSL 1166 (1367)
Q Consensus 1091 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n--~~~~~~p~~~~~l~~L~~L~ls~n~~~~--~~p~~~~~l~~L 1166 (1367)
+..|+.|.+.++.++.. ..+..|++|++|.++.| ...+.++.....+|+|++|++++|++.. .+ ..+..+.+|
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcch
Confidence 34555556666555531 24556778888888888 4445555445556888888888887542 22 234566778
Q ss_pred cEEEccCCCC
Q 000660 1167 QELTIGRGVE 1176 (1367)
Q Consensus 1167 ~~L~l~~n~~ 1176 (1367)
..|++.+|..
T Consensus 119 ~~Ldl~n~~~ 128 (260)
T KOG2739|consen 119 KSLDLFNCSV 128 (260)
T ss_pred hhhhcccCCc
Confidence 8888888753
No 287
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.052 Score=63.99 Aligned_cols=72 Identities=24% Similarity=0.245 Sum_probs=48.2
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc--CHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF--DVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
..-|.|.|+.|+|||+||+++++... +++.-.+..|+++.-. ..+.+++ .+...+.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk------------------~l~~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK------------------FLNNVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH------------------HHHHHHHHHH
Confidence 45688999999999999999998544 5555566777776432 1111111 1222334556
Q ss_pred CCCceEEEEEcCC
Q 000660 293 SGKKFLLVLDDVW 305 (1367)
Q Consensus 293 ~~k~~LlVlDdv~ 305 (1367)
...+-+|||||+.
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6788999999983
No 288
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.90 E-value=0.07 Score=52.54 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=60.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEE---eCCccCHHHHHHHHHHHhhhcCC-----CCCCC-------
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC---VSDDFDVKRLTKTILTSIVASQN-----VGDPS------- 280 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~~il~~l~~~~~-----~~~~~------- 280 (1367)
..|-|++..|.||||+|...+-.. ....+. +.++. -........+++.+ ..+..... ....+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra-~~~g~~-v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA-LGHGYR-VGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-HHCCCe-EEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 467788888999999998876532 111222 22322 22123333333332 00100000 00011
Q ss_pred hHHHHHHHHHHhCCCce-EEEEEcCCCC---CchhhhhhccccCCCCCCcEEEEEcCch
Q 000660 281 LNSLQKELSKQLSGKKF-LLVLDDVWNR---NYDDWVQLRRPFEVGAPGSKIIVTTRNQ 335 (1367)
Q Consensus 281 ~~~~~~~l~~~l~~k~~-LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 335 (1367)
.....+..++.+....| |+|||++--. ...+.+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223334455555555 9999998321 2234455555565556678999999984
No 289
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.81 E-value=0.056 Score=54.64 Aligned_cols=43 Identities=23% Similarity=0.105 Sum_probs=30.4
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD 258 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 258 (1367)
..++.+.|+.|+|||.+|+.+..-..+ +.....+-++.+.-.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 468889999999999999999873221 3344556666665433
No 290
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.067 Score=65.67 Aligned_cols=157 Identities=18% Similarity=0.262 Sum_probs=81.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCc---cccccc-ceEEEEEeCCccCHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK---QVQDHF-DLKAWTCVSDDFDVKRLT 263 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~~s~~~~~~~~~ 263 (1367)
..++||++|++++++.|..... +. -.++|.+|+|||++|.-++... .|-... +..++. . |+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K---NN---PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-L----D~g--- 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK---NN---PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-L----DLG--- 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC---CC---CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-e----cHH---
Confidence 3589999999999999986532 11 2467999999999887776531 111111 112211 0 111
Q ss_pred HHHHHHhhhcCCCCCCChHH-HHHHHHHHhCCCceEEEEEcCCCC---------CchhhhhhccccCCCCCCcEEEEEcC
Q 000660 264 KTILTSIVASQNVGDPSLNS-LQKELSKQLSGKKFLLVLDDVWNR---------NYDDWVQLRRPFEVGAPGSKIIVTTR 333 (1367)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR 333 (1367)
.-+.+... ..+.++ +...+.+.-+.++..+.+|.+... ..+.-.-++..+.. +.--.|=.||-
T Consensus 236 ----~LvAGaky--RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~ 308 (786)
T COG0542 236 ----SLVAGAKY--RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTL 308 (786)
T ss_pred ----HHhccccc--cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccH
Confidence 11111111 123333 333333333355899999998431 01122222222322 12223445665
Q ss_pred chhH------HhhhCCCCceeCCCCChHHHHHHHHhhh
Q 000660 334 NQEV------AEIMGTVPSYQLKKLSDNDCLAVFAQHS 365 (1367)
Q Consensus 334 ~~~v------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1367)
++.- +....-...+.++..+.+++..+++...
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 4321 1111233578899999999999887543
No 291
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.77 E-value=0.23 Score=51.09 Aligned_cols=120 Identities=16% Similarity=0.186 Sum_probs=63.8
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEE---eCCccCHHHHHH------HHHHHhhhcCC----CCCCC-
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC---VSDDFDVKRLTK------TILTSIVASQN----VGDPS- 280 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~------~il~~l~~~~~----~~~~~- 280 (1367)
..+++|+|..|.|||||++.++.-. ......+++. +.. .+...... ++++.++.... ....+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4689999999999999999998732 2233344432 211 12222111 13444432211 01111
Q ss_pred hHHHHHHHHHHhCCCceEEEEEcCCCC-CchhhhhhccccCCC-CC-CcEEEEEcCchhHH
Q 000660 281 LNSLQKELSKQLSGKKFLLVLDDVWNR-NYDDWVQLRRPFEVG-AP-GSKIIVTTRNQEVA 338 (1367)
Q Consensus 281 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~ 338 (1367)
-+...-.+.+.+-..+-++++|+--.. +....+.+...+... .. |..||++|.+.+..
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 122233455666678889999997432 223333444433322 12 66788888876544
No 292
>PRK13695 putative NTPase; Provisional
Probab=94.74 E-value=0.032 Score=57.16 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998864
No 293
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.74 E-value=0.11 Score=52.52 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=28.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc
Q 000660 217 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF 257 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 257 (1367)
++.|+|.+|+||||+|+.+.... ...-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcch
Confidence 36799999999999999998743 2223456777766554
No 294
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.73 E-value=0.18 Score=51.78 Aligned_cols=119 Identities=20% Similarity=0.065 Sum_probs=59.6
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhh--cCC-----------CCCCCh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVA--SQN-----------VGDPSL 281 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~--~~~-----------~~~~~~ 281 (1367)
-.+++|+|..|.|||||++.+..-... -...+++.-. +.......+-..++- +.. ...-+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 468999999999999999999864211 1223332211 111111111111110 000 001111
Q ss_pred -HHHHHHHHHHhCCCceEEEEEcCCCC-CchhhhhhccccCCCCCCcEEEEEcCchhHHh
Q 000660 282 -NSLQKELSKQLSGKKFLLVLDDVWNR-NYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAE 339 (1367)
Q Consensus 282 -~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 339 (1367)
+...-.+.+.+-.++=++++|+.... +....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22223345556677889999997543 22222333333322223677888888876554
No 295
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.72 E-value=0.11 Score=55.14 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=71.9
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-----ccCHHHHHHHHHHHhhhcCCC------CCCChH
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD-----DFDVKRLTKTILTSIVASQNV------GDPSLN 282 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~il~~l~~~~~~------~~~~~~ 282 (1367)
+..+++|||..|.||||+|+.+.. ....-...++....+ .....+-..++++.++..... +...-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 346899999999999999999986 222222333333221 122334455666666543211 111222
Q ss_pred HHHHHHHHHhCCCceEEEEEcCCCCC-chhhhhhccccCC--CCCCcEEEEEcCchhHHhhhCC
Q 000660 283 SLQKELSKQLSGKKFLLVLDDVWNRN-YDDWVQLRRPFEV--GAPGSKIIVTTRNQEVAEIMGT 343 (1367)
Q Consensus 283 ~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~~ 343 (1367)
...-.+.+.+.-++=++|.|..-+.- ...-.++...+.+ ...|-..+..|.+-.|+..+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 23334667788899999999863321 1111222222221 2346677888888777776653
No 296
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.24 Score=60.42 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=75.6
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
...+.+-++|++|.|||.||+++++. ...+|-.+.+ . . ++... -......+........
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi~v~~-----~----~----l~sk~------vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFISVKG-----S----E----LLSKW------VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEEEeeC-----H----H----Hhccc------cchHHHHHHHHHHHHH
Confidence 34568899999999999999999983 3334432221 1 1 11110 1122233344444455
Q ss_pred CCCceEEEEEcCCCC-----C--c----hhhhhhccccCC--CCCCcEEEEEcCchhHHhh-h----CCCCceeCCCCCh
Q 000660 293 SGKKFLLVLDDVWNR-----N--Y----DDWVQLRRPFEV--GAPGSKIIVTTRNQEVAEI-M----GTVPSYQLKKLSD 354 (1367)
Q Consensus 293 ~~k~~LlVlDdv~~~-----~--~----~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~ 354 (1367)
+..++.|.+|.+..- . . ....++...+.. ...+..||-||-.....+. + .-...+.+..-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 678999999998331 0 0 112223333322 2233345555554433221 1 2235788888999
Q ss_pred HHHHHHHHhhhcC
Q 000660 355 NDCLAVFAQHSLG 367 (1367)
Q Consensus 355 ~~~~~lf~~~~~~ 367 (1367)
++..+.|+.+.-.
T Consensus 413 ~~r~~i~~~~~~~ 425 (494)
T COG0464 413 EERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988753
No 297
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.68 E-value=0.061 Score=59.62 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=24.2
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCc
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDK 239 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (1367)
...+.+.|||++|.|||.+|+++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999853
No 298
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.65 E-value=0.22 Score=50.85 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=59.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCC--ccCHHHHHHHHHHHhhh--cCC-C-CC------CCh-
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD--DFDVKRLTKTILTSIVA--SQN-V-GD------PSL- 281 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~il~~l~~--~~~-~-~~------~~~- 281 (1367)
..+++|+|..|.|||||.+.++.-.. .....+++.-.. ....... ...++- +.. . .. .+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 46899999999999999999987321 223333332110 0011111 011110 000 0 00 111
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCCCC-CchhhhhhccccCCCCCCcEEEEEcCchhHHhh
Q 000660 282 NSLQKELSKQLSGKKFLLVLDDVWNR-NYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEI 340 (1367)
Q Consensus 282 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 340 (1367)
+...-.+.+.+-.++=++++|+-... +......+...+.....+..||++|.+.+....
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 11222345556677789999997543 222233333333222235678888888766543
No 299
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.65 E-value=0.14 Score=64.06 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=80.4
Q ss_pred cccccchhHHHHHHHHh---cCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHH
Q 000660 189 KVYGRETEKKDVVELLL---RDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRL 262 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 262 (1367)
++.|.+..++++.+.+. .... .+..-.+-|.++|++|+|||++|+.++... ...| +.+..++ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------h
Confidence 46676655555544332 1100 011112348899999999999999998743 2223 2222221 1
Q ss_pred HHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCC----------chhhhh----hccccCC--CCCCc
Q 000660 263 TKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRN----------YDDWVQ----LRRPFEV--GAPGS 326 (1367)
Q Consensus 263 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~gs 326 (1367)
. ... .......+...+...-...+++|++|+++.-. ...+.. +...+.. ...+.
T Consensus 222 ~----~~~------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 222 V----EMF------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred H----Hhh------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 1 000 01112233333444444578899999984421 011222 2111211 12344
Q ss_pred EEEEEcCchhHHhh-h-C---CCCceeCCCCChHHHHHHHHhhhcC
Q 000660 327 KIIVTTRNQEVAEI-M-G---TVPSYQLKKLSDNDCLAVFAQHSLG 367 (1367)
Q Consensus 327 ~ilvTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~~ 367 (1367)
-||.||...+..+. . . -...+.+...+.++-.++++.+...
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 55667776554321 1 1 2356778888888888888776543
No 300
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.65 E-value=0.13 Score=58.35 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=40.8
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCccccc----ccceEEEEEeCCccCHHHHHHHHHHHh
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQD----HFDLKAWTCVSDDFDVKRLTKTILTSI 270 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (1367)
...+++-|+|.+|+|||++|.+++....... .=..++||+....++.+++. ++++..
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 4568899999999999999999975432210 11268999999888887654 344443
No 301
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.61 E-value=0.048 Score=52.20 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=31.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhh
Q 000660 217 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVA 272 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~ 272 (1367)
+|.|-|++|+||||+|+.++++...+ | + +.-.++++|+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-------v----saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-------V----SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-------e----eccHHHHHHHHHcCC
Confidence 68999999999999999999843221 1 1 234677888777654
No 302
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.60 E-value=0.18 Score=57.11 Aligned_cols=58 Identities=21% Similarity=0.119 Sum_probs=41.8
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccc----cccceEEEEEeCCccCHHHHHHHHHHHhh
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----DHFDLKAWTCVSDDFDVKRLTKTILTSIV 271 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~il~~l~ 271 (1367)
....++-|+|.+|+|||++|..++-..... ..-..++|++....|+.+++ .+|++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 456888899999999999998877432211 11136899999999988876 45566554
No 303
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.60 E-value=0.17 Score=51.38 Aligned_cols=115 Identities=18% Similarity=0.196 Sum_probs=61.0
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCc---ccccc---cc--eEEEEEeCCccCHHHHHHHHHHHhhhcCC-C--C--CCCh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDK---QVQDH---FD--LKAWTCVSDDFDVKRLTKTILTSIVASQN-V--G--DPSL 281 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~---F~--~~~wv~~s~~~~~~~~~~~il~~l~~~~~-~--~--~~~~ 281 (1367)
-.+++|+|+.|+|||||.+.+..+. .+... |. ...|+ .+ .+.++.++.... . . ..+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999986321 11111 11 12232 11 345566553321 0 1 1111
Q ss_pred -HHHHHHHHHHhCCC--ceEEEEEcCCCC-CchhhhhhccccCCC-CCCcEEEEEcCchhHHh
Q 000660 282 -NSLQKELSKQLSGK--KFLLVLDDVWNR-NYDDWVQLRRPFEVG-APGSKIIVTTRNQEVAE 339 (1367)
Q Consensus 282 -~~~~~~l~~~l~~k--~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 339 (1367)
+...-.+.+.+-.+ +=++++|..-.. +......+...+... ..|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22223344555556 678888987432 222333333333221 24677888888876654
No 304
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=1.4 Score=48.92 Aligned_cols=157 Identities=11% Similarity=0.075 Sum_probs=89.2
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCc---c-----cccccceEEEEEe-CCccCHHHHHHHHHHHhhhcCCCCCCChHHHH
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDK---Q-----VQDHFDLKAWTCV-SDDFDVKRLTKTILTSIVASQNVGDPSLNSLQ 285 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~---~-----~~~~F~~~~wv~~-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 285 (1367)
..+..++|..|.||+++|+.+.+.. . ...|-+-..++.. .....++++. ++.+.+....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC-----------
Confidence 4666799999999999999987632 1 1111112233321 1111222111 2222221110
Q ss_pred HHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hhHHhh-hCCCCceeCCCCChHHHHHHHHh
Q 000660 286 KELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QEVAEI-MGTVPSYQLKKLSDNDCLAVFAQ 363 (1367)
Q Consensus 286 ~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~ 363 (1367)
.-.+++=++|+|++...+......+...+.....++.+|++|.+ ..+... ......+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 00146668899999776666677777777766667777765543 444332 23456899999999999877765
Q ss_pred hhcCCcchHHHHHHHHHHhcCCChHHHHHH
Q 000660 364 HSLGSHKLLEEIGKKIVTKCDGLPLAAQTL 393 (1367)
Q Consensus 364 ~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 393 (1367)
. +. .++.+..++...+|.--|+..+
T Consensus 161 ~--~~---~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 161 K--NK---EKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred c--CC---ChhHHHHHHHHcCCHHHHHHHH
Confidence 4 11 2244666676777633455543
No 305
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.58 E-value=0.05 Score=55.27 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999985
No 306
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.57 E-value=0.28 Score=48.60 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCC-CCCc-hhhhhhccccCCCCCCcEEEEEcCchhHHhhhC
Q 000660 282 NSLQKELSKQLSGKKFLLVLDDVW-NRNY-DDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMG 342 (1367)
Q Consensus 282 ~~~~~~l~~~l~~k~~LlVlDdv~-~~~~-~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 342 (1367)
++..-.|.+.+-+++-+++-|.-- +-++ -.|+-+.-.-.-+..|..||++|.+..+.+.+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 445556777788899999988641 1111 345443322223467999999999988776553
No 307
>PRK13949 shikimate kinase; Provisional
Probab=94.53 E-value=0.28 Score=49.69 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
-|.|+|++|+||||+|+.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 308
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.53 E-value=0.26 Score=48.52 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=56.1
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
-.+++|+|..|.|||||++.+..-.. .....+|+.-.. .+.--. ....-+...-.+.+.+-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~--~lS~G~~~rv~laral~~ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE--QLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc--cCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999986422 223334332100 000000 011112222334555666
Q ss_pred CceEEEEEcCCCC-CchhhhhhccccCCCCCCcEEEEEcCchhHHh
Q 000660 295 KKFLLVLDDVWNR-NYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAE 339 (1367)
Q Consensus 295 k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 339 (1367)
++=++++|+.-.. +......+...+... +..||++|.+.+...
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 7779999987432 223333444444322 246888887765543
No 309
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.50 E-value=0.094 Score=58.12 Aligned_cols=86 Identities=19% Similarity=0.101 Sum_probs=53.3
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCC----CCCChHHHHHHH
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNV----GDPSLNSLQKEL 288 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 288 (1367)
+..+++-|+|+.|+||||||..+... .+..-..++|++..+.++... +++++..... .....++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 45689999999999999999998863 333345688999988877643 3444332211 223445555666
Q ss_pred HHHhCCC-ceEEEEEcCC
Q 000660 289 SKQLSGK-KFLLVLDDVW 305 (1367)
Q Consensus 289 ~~~l~~k-~~LlVlDdv~ 305 (1367)
.+.++.. --++|+|-|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 6666644 3589999983
No 310
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.49 E-value=0.082 Score=55.10 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=52.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh---
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL--- 292 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l--- 292 (1367)
++..|.|.+|+||||+++.+.......+ ..+.+......... .+.+..+.. ...+. ..+...-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~----~L~~~~~~~----a~Ti~---~~l~~~~~~~ 84 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAK----ELREKTGIE----AQTIH---SFLYRIPNGD 84 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHH----HHHHHHTS-----EEEHH---HHTTEECCEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHH----HHHHhhCcc----hhhHH---HHHhcCCccc
Confidence 6888999999999999998876322221 23333332222222 222222211 01111 1110000
Q ss_pred ------CCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCch
Q 000660 293 ------SGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQ 335 (1367)
Q Consensus 293 ------~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 335 (1367)
..++-+||+|+++-.+...+..+...... .|+|+|+.--..
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12345999999977766667666655543 577888765543
No 311
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.033 Score=53.30 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=21.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCc
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDK 239 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~ 239 (1367)
--|.|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468899999999999999999743
No 312
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.45 E-value=0.19 Score=53.28 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=67.7
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcc-----cc--c----cc---ceEEEEEeCCcc------CH---------------
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQ-----VQ--D----HF---DLKAWTCVSDDF------DV--------------- 259 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~--~----~F---~~~~wv~~s~~~------~~--------------- 259 (1367)
..+++|+|+.|.|||||.+.+..-.. +. + .. ..+.||.=...+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 37899999999999999999976211 10 0 01 234555321111 11
Q ss_pred -------HHHHHHHHHHhhhcCC----CCCCCh-HHHHHHHHHHhCCCceEEEEEcCCC----CCchhhhhhccccCCCC
Q 000660 260 -------KRLTKTILTSIVASQN----VGDPSL-NSLQKELSKQLSGKKFLLVLDDVWN----RNYDDWVQLRRPFEVGA 323 (1367)
Q Consensus 260 -------~~~~~~il~~l~~~~~----~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~----~~~~~~~~l~~~l~~~~ 323 (1367)
.+...+.+++++...- ...-+- +...-.|.+.|..++=|+|||.--. .......++...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 2344445555544321 111222 2333456778889999999997422 2222333344444433
Q ss_pred CCcEEEEEcCchhH
Q 000660 324 PGSKIIVTTRNQEV 337 (1367)
Q Consensus 324 ~gs~ilvTtR~~~v 337 (1367)
|..||++|.+-..
T Consensus 189 -g~tIl~vtHDL~~ 201 (254)
T COG1121 189 -GKTVLMVTHDLGL 201 (254)
T ss_pred -CCEEEEEeCCcHH
Confidence 8899999998544
No 313
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.42 E-value=0.31 Score=49.36 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=59.6
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCccc-ccc--cc---eEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHH
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQV-QDH--FD---LKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKEL 288 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l 288 (1367)
-.+++|+|..|.|||||++.+..-... .+. ++ ...+ +.+..... ...+.+.+..........-+...-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccc--cccHHHHhhccCCCCCCHHHHHHHHH
Confidence 468999999999999999999864221 111 11 1122 22222111 01122222110111112222333345
Q ss_pred HHHhCCCceEEEEEcCCCC-CchhhhhhccccCCCCCCcEEEEEcCchhHHh
Q 000660 289 SKQLSGKKFLLVLDDVWNR-NYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAE 339 (1367)
Q Consensus 289 ~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 339 (1367)
.+.+-.++=++++|.--.. +......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 5666677778899986432 222233333333322 356888888766543
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.39 E-value=0.21 Score=50.76 Aligned_cols=103 Identities=15% Similarity=0.095 Sum_probs=55.2
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEE------eCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHH
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC------VSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKEL 288 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l 288 (1367)
-.+++|+|..|.|||||++.+..-.. .....+++. +.+... ...-+...-.+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~l 82 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAI 82 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHH
Confidence 46899999999999999999986321 122223221 111111 11112223344
Q ss_pred HHHhCCCceEEEEEcCCCC-CchhhhhhccccCCC-CC-CcEEEEEcCchhHHh
Q 000660 289 SKQLSGKKFLLVLDDVWNR-NYDDWVQLRRPFEVG-AP-GSKIIVTTRNQEVAE 339 (1367)
Q Consensus 289 ~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~~ 339 (1367)
.+.+-.++-++++|.--.. +......+...+... .. +..||++|.+.....
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 5566667789999987432 222223333333221 12 356777777765444
No 315
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.36 E-value=0.22 Score=58.10 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.8
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+..++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998888763
No 316
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.34 E-value=0.13 Score=57.87 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=46.0
Q ss_pred CceEEEEeCCCCCcHH-HHHHHHHcCcccccccceEEEEEeCCc-cCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH
Q 000660 214 GFSVIPIIGMGGLGKT-TLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQ 291 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 291 (1367)
+.+||.+||+.|+||| |||+..+.-....++ ..+..++...- -...+-++.-++-++.+-. ...+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh
Confidence 3699999999999999 577777653211222 23455544221 1222223333333333322 344555665555443
Q ss_pred hCCCceEEEEEcCCC
Q 000660 292 LSGKKFLLVLDDVWN 306 (1367)
Q Consensus 292 l~~k~~LlVlDdv~~ 306 (1367)
++.+ +|.+|-+..
T Consensus 280 -~~~d-~ILVDTaGr 292 (407)
T COG1419 280 -RDCD-VILVDTAGR 292 (407)
T ss_pred -hcCC-EEEEeCCCC
Confidence 3333 455566643
No 317
>PRK07667 uridine kinase; Provisional
Probab=94.25 E-value=0.059 Score=56.14 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.+.+.+.+.... ++..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665432 34589999999999999999999873
No 318
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.24 E-value=0.14 Score=58.28 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=47.0
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc--CHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF--DVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
..++.++|+.|+||||++.++......+.....+..++. +.+ ...+-++...+.++.... ...+..++...+. .+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~-~l 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT-DSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALA-EL 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-ccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHH-Hh
Confidence 478999999999999999999864221111123444443 222 233344444444443322 1222223333333 33
Q ss_pred CCCceEEEEEcCCC
Q 000660 293 SGKKFLLVLDDVWN 306 (1367)
Q Consensus 293 ~~k~~LlVlDdv~~ 306 (1367)
.++ =+|++|....
T Consensus 214 ~~~-DlVLIDTaG~ 226 (374)
T PRK14722 214 RNK-HMVLIDTIGM 226 (374)
T ss_pred cCC-CEEEEcCCCC
Confidence 444 4566898843
No 319
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.16 E-value=0.24 Score=57.92 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.4
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+..+|.++|.+|+||||.|..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999999864
No 320
>PTZ00301 uridine kinase; Provisional
Probab=94.16 E-value=0.051 Score=56.91 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.1
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHc
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 321
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.13 E-value=0.26 Score=53.39 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=53.7
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCC-----------------
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQN----------------- 275 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~----------------- 275 (1367)
+..+++.|+|.+|+|||++|.++.... .+ .=..++|+...+. ..++.+++ ++++-...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 467899999999999999999986431 12 2245778887654 34444443 22221100
Q ss_pred --CCCCChHHHHHHHHHHhCC-CceEEEEEcCC
Q 000660 276 --VGDPSLNSLQKELSKQLSG-KKFLLVLDDVW 305 (1367)
Q Consensus 276 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 305 (1367)
......+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55589999974
No 322
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.12 E-value=0.11 Score=59.35 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHc
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+..++.++|++|+||||+|..++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 323
>PRK10867 signal recognition particle protein; Provisional
Probab=94.12 E-value=0.26 Score=57.60 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=20.8
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHc
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999997777765
No 324
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.08 E-value=0.26 Score=57.73 Aligned_cols=141 Identities=19% Similarity=0.288 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHH-HHHHHHcCcccccccceEEEEEeCCcc--CHHHHHHHHHHHhhhc
Q 000660 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTT-LAQLVYNDKQVQDHFDLKAWTCVSDDF--DVKRLTKTILTSIVAS 273 (1367)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~ 273 (1367)
.++|++.+... .||.|||..|.|||| |||.+|.+- |...--|.+.+.- ....+.+.+.++++..
T Consensus 361 R~~ll~~ir~n--------~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 361 RDQLLSVIREN--------QVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHHhhC--------cEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 45556655432 699999999999997 888888752 2111134444443 3345667777777543
Q ss_pred CCC---------CCCCh----------HHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhcc---ccCCCCCCcEEEEE
Q 000660 274 QNV---------GDPSL----------NSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRR---PFEVGAPGSKIIVT 331 (1367)
Q Consensus 274 ~~~---------~~~~~----------~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~---~l~~~~~gs~ilvT 331 (1367)
... +..+. --+.+.|.+..-.|--.||+|.+.+.+. .-+-+.. ........-|+|||
T Consensus 428 lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERsl-NtDilfGllk~~larRrdlKliVt 506 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRRDLKLIVT 506 (1042)
T ss_pred cccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhccc-chHHHHHHHHHHHHhhccceEEEe
Confidence 210 11111 1233334443334556899999976532 1111111 11122346799999
Q ss_pred cCchh---HHhhhCCCCceeCCC
Q 000660 332 TRNQE---VAEIMGTVPSYQLKK 351 (1367)
Q Consensus 332 tR~~~---v~~~~~~~~~~~l~~ 351 (1367)
+-..+ .++.++....+.+++
T Consensus 507 SATm~a~kf~nfFgn~p~f~IpG 529 (1042)
T KOG0924|consen 507 SATMDAQKFSNFFGNCPQFTIPG 529 (1042)
T ss_pred eccccHHHHHHHhCCCceeeecC
Confidence 97643 344455444444443
No 325
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.41 Score=55.86 Aligned_cols=150 Identities=21% Similarity=0.277 Sum_probs=83.9
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
..=|.++|++|.|||-||++|+|.. +..| +.|-.. ++ +.... ..+...+....++.=..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa--g~NF-----isVKGP----EL----lNkYV------GESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA--GANF-----ISVKGP----EL----LNKYV------GESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc--cCce-----EeecCH----HH----HHHHh------hhHHHHHHHHHHHhhcC
Confidence 4457799999999999999999953 3344 333322 11 11111 12222333333444446
Q ss_pred CceEEEEEcCCCC-----Cchh------hhhhccccCC--CCCCcEEEEEcCchhHHhh--hC---CCCceeCCCCChHH
Q 000660 295 KKFLLVLDDVWNR-----NYDD------WVQLRRPFEV--GAPGSKIIVTTRNQEVAEI--MG---TVPSYQLKKLSDND 356 (1367)
Q Consensus 295 k~~LlVlDdv~~~-----~~~~------~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~~ 356 (1367)
-+++|.||.+..- +... ..++..-+.. ...|--||-.|..+++.+. +. -.....|+.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 8999999998431 1111 2223333322 2456677777766555332 22 23566777778888
Q ss_pred HHHHHHhhhc--C----CcchHHHHHHHHHHhcCCCh
Q 000660 357 CLAVFAQHSL--G----SHKLLEEIGKKIVTKCDGLP 387 (1367)
Q Consensus 357 ~~~lf~~~~~--~----~~~~~~~~~~~i~~~~~g~P 387 (1367)
-.++++...- + .+-.+.++|+. .+|.|.-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 8888887765 2 22345555543 3555543
No 326
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.01 E-value=0.14 Score=51.58 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=60.9
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCC--ccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD--DFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
..+++|+|..|.|||||.+.++.-. ......+++.-.. ..+..+..+ ..++--. ....-+...-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHHH
Confidence 4689999999999999999998632 2234444443211 111111111 0111000 1111222333455566
Q ss_pred CCCceEEEEEcCCCC-CchhhhhhccccCCC-CCCcEEEEEcCchhHH
Q 000660 293 SGKKFLLVLDDVWNR-NYDDWVQLRRPFEVG-APGSKIIVTTRNQEVA 338 (1367)
Q Consensus 293 ~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~ 338 (1367)
-.++-++++|+.-.. +......+...+... ..|..||++|.+....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 677889999997432 223333343333321 2366788888886543
No 327
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.01 E-value=0.27 Score=60.60 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=72.3
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcc-cccccceEEEEEeCCccCHHHHHHH
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VQDHFDLKAWTCVSDDFDVKRLTKT 265 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (1367)
...++|....++++.+.+..-. . ...-|.|+|..|+|||++|+.+++... -...| +.|++..-.+ ..+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a---~-~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pf---v~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA---R-SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPF---VKVNCAALSE--TLLES 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh---C-cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCe---EEeecCCCCH--HHHHH
Confidence 4578999999999888775431 1 224567999999999999999997432 12223 4455543321 22111
Q ss_pred HHHHhhhcCCCCCCC-hHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCC-----------CCcEEEEEcC
Q 000660 266 ILTSIVASQNVGDPS-LNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGA-----------PGSKIIVTTR 333 (1367)
Q Consensus 266 il~~l~~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR 333 (1367)
.+.+........ .......+. ....-.|+||+|..-....+..+...+..+. ...|||.||.
T Consensus 266 ---~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHcCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 111111000000 000000000 1234468899997766666666666554321 1358888875
Q ss_pred c
Q 000660 334 N 334 (1367)
Q Consensus 334 ~ 334 (1367)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 4
No 328
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.00 E-value=0.2 Score=58.82 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=45.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCH--HHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDV--KRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
.+++.++|++|+||||++..++........-..+..|+... +.. ..-++...+.++.... ...+.+++...+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-
Confidence 46999999999999998888765322011123455555432 211 1122222232322221 223344555555442
Q ss_pred CCCceEEEEEcCCC
Q 000660 293 SGKKFLLVLDDVWN 306 (1367)
Q Consensus 293 ~~k~~LlVlDdv~~ 306 (1367)
. ..=+||+|....
T Consensus 298 ~-~~DlVlIDt~G~ 310 (424)
T PRK05703 298 R-DCDVILIDTAGR 310 (424)
T ss_pred C-CCCEEEEeCCCC
Confidence 2 345788897643
No 329
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.00 E-value=0.21 Score=58.85 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHc
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
...+++|+|++|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999988875
No 330
>PTZ00494 tuzin-like protein; Provisional
Probab=93.98 E-value=11 Score=43.13 Aligned_cols=169 Identities=12% Similarity=0.103 Sum_probs=101.4
Q ss_pred cccCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 000660 185 VDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
.....+|.|+.|-..+.+.|.+-+ ...++++.+.|.-|.||++|.+.....+.+ ..++|++... ++-++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHH
Confidence 345678999999888888887653 357899999999999999999998875443 3567887765 44567
Q ss_pred HHHHHhhhcCCCC-CCChHHHHHHHH---HHhCCCceEEEEEcCCCCCc-hhhhhhccccCCCCCCcEEEEEcCchhHHh
Q 000660 265 TILTSIVASQNVG-DPSLNSLQKELS---KQLSGKKFLLVLDDVWNRNY-DDWVQLRRPFEVGAPGSKIIVTTRNQEVAE 339 (1367)
Q Consensus 265 ~il~~l~~~~~~~-~~~~~~~~~~l~---~~l~~k~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 339 (1367)
.+++.++.+.-.. .+-++-+.+..+ ....++.=+||+-==.-.+. -.+.+. ..+.....-|.|++----+.+--
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhch
Confidence 7888887654311 122232333322 22345555666543211110 111111 12334455677776544332211
Q ss_pred hh---CCCCceeCCCCChHHHHHHHHhhh
Q 000660 340 IM---GTVPSYQLKKLSDNDCLAVFAQHS 365 (1367)
Q Consensus 340 ~~---~~~~~~~l~~L~~~~~~~lf~~~~ 365 (1367)
.. .-..-|.++.++.++|.+.-.+..
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 11 112468899999999988776653
No 331
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.94 E-value=0.042 Score=45.89 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+|.|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 332
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.90 E-value=0.058 Score=56.99 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHc
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38889999999999999999873
No 333
>PTZ00035 Rad51 protein; Provisional
Probab=93.90 E-value=0.41 Score=54.37 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=39.6
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccc----cccceEEEEEeCCccCHHHHHHHHHHHh
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ----DHFDLKAWTCVSDDFDVKRLTKTILTSI 270 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (1367)
....++.|+|.+|+|||||+..++-..... ..=..++|++....++.+++ .+++++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~ 176 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERF 176 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHh
Confidence 467899999999999999999887432211 11235679998887777763 4445544
No 334
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.89 E-value=0.15 Score=58.03 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=49.4
Q ss_pred CcccccchhHHHHHHHHhcC--------CCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccccccc---ceEEEEEe-CC
Q 000660 188 AKVYGRETEKKDVVELLLRD--------DLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF---DLKAWTCV-SD 255 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~-s~ 255 (1367)
..++|.++.++.+.-.+... +.......+-|.++|++|+|||++|+.+.... ...| +...+... ..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l--~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh--CCeEEEeecceeecCCcc
Confidence 45899988888887666531 00011124678899999999999999998742 2233 22212221 12
Q ss_pred ccCHHHHHHHHHHHh
Q 000660 256 DFDVKRLTKTILTSI 270 (1367)
Q Consensus 256 ~~~~~~~~~~il~~l 270 (1367)
..+.+.+++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666666554
No 335
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.89 E-value=0.41 Score=58.40 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=69.0
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHH
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILT 268 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 268 (1367)
.++|....++++++.+..-.. .-.-|.|+|..|+||+++|+.++....-. -..-+.+++..-.+ ..+..
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~--~~pfv~inca~~~~--~~~e~--- 273 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSPRG--KKPFLALNCASIPD--DVVES--- 273 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeccccCCH--HHHHH---
Confidence 589998888888776643211 12347799999999999999987632111 11224555554331 22211
Q ss_pred HhhhcCCCCCCCh-HHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCC-----------CCcEEEEEcCch
Q 000660 269 SIVASQNVGDPSL-NSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGA-----------PGSKIIVTTRNQ 335 (1367)
Q Consensus 269 ~l~~~~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 335 (1367)
.+.+......... +.....+. +...=.|+||+|..-.......+...+..+. ...|||.||...
T Consensus 274 elFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 ELFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred HhcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 1111111000000 00000011 1123357899998776666666655554321 134788877654
No 336
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.85 E-value=0.16 Score=57.75 Aligned_cols=133 Identities=17% Similarity=0.092 Sum_probs=71.3
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcc-cccccceEEEEEeCCccCHHHHHHHHH
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.++|+...++++.+.+..-.. .-.-|.|+|..|+||+++|+.++.... -... .+.|++.... ...+...++
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~p---fv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSRWQGP---FISLNCAALN-ENLLDSELF 78 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCccCCC---eEEEeCCCCC-HHHHHHHHc
Confidence 488999888888887764321 224567999999999999999986321 1122 3445555432 222222222
Q ss_pred HHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCC-----------CCcEEEEEcCch
Q 000660 268 TSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGA-----------PGSKIIVTTRNQ 335 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 335 (1367)
..-..... ... ......+. ....=.|+||+|..-....+..+...+..+. ...|||+||...
T Consensus 79 g~~~~~~~-g~~--~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 79 GHEAGAFT-GAQ--KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred cccccccC-Ccc--cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 11100000 000 00001111 1223358899997766666666665553321 135888887653
No 337
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.83 E-value=0.18 Score=48.67 Aligned_cols=85 Identities=18% Similarity=0.080 Sum_probs=41.7
Q ss_pred hhccCCccceeeecccCCcccCccccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCC
Q 000660 1087 RLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSL 1166 (1367)
Q Consensus 1087 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L 1166 (1367)
.|.++++|+.+.+.. .+...-...|.++++|+.+.+.++ ....-...+..+++|+.+.+.+ .....-...|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 456667777777764 344444556677777777777664 3332333455666777777754 2222233455567777
Q ss_pred cEEEccCC
Q 000660 1167 QELTIGRG 1174 (1367)
Q Consensus 1167 ~~L~l~~n 1174 (1367)
+.+++..+
T Consensus 84 ~~i~~~~~ 91 (129)
T PF13306_consen 84 KNIDIPSN 91 (129)
T ss_dssp CEEEETTT
T ss_pred cccccCcc
Confidence 77776543
No 338
>PRK13948 shikimate kinase; Provisional
Probab=93.79 E-value=0.46 Score=48.54 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.2
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
..+.|.++|+.|+||||+++.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999873
No 339
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.78 E-value=0.22 Score=50.87 Aligned_cols=118 Identities=23% Similarity=0.221 Sum_probs=58.9
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCC--ccCHHHHHHHHHHHhhhcCC-CC--C-------CCh-
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD--DFDVKRLTKTILTSIVASQN-VG--D-------PSL- 281 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~il~~l~~~~~-~~--~-------~~~- 281 (1367)
..+++|+|..|.|||||++.++.-.. .....+++.-.. ........ ..+.--.. .. . -+-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCHH
Confidence 46899999999999999999986321 222333322110 01111111 11111000 00 0 111
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCCCC-CchhhhhhccccCCC-CCCcEEEEEcCchhHHh
Q 000660 282 NSLQKELSKQLSGKKFLLVLDDVWNR-NYDDWVQLRRPFEVG-APGSKIIVTTRNQEVAE 339 (1367)
Q Consensus 282 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 339 (1367)
+...-.+.+.+-.++=++++|+.... +......+...+... ..|..||++|.+.+...
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 12223344556667779999997442 222233333333221 23667888888876554
No 340
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.78 E-value=0.041 Score=53.09 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEeCCCCCcHHHHHHHHHcC
Q 000660 218 IPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~ 238 (1367)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 341
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.72 E-value=0.054 Score=57.29 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
...+|+|+|++|+||||||+.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999863
No 342
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.71 E-value=0.056 Score=57.39 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.8
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999874
No 343
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.69 E-value=0.045 Score=57.20 Aligned_cols=22 Identities=45% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
||+|.|.+|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999873
No 344
>PRK06547 hypothetical protein; Provisional
Probab=93.67 E-value=0.089 Score=53.24 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=23.1
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
....+|.|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999874
No 345
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.62 E-value=0.51 Score=49.33 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCCC-CCchhhhhhccccCC--CCCCcEEEEEcCchhHHhhhC
Q 000660 282 NSLQKELSKQLSGKKFLLVLDDVWN-RNYDDWVQLRRPFEV--GAPGSKIIVTTRNQEVAEIMG 342 (1367)
Q Consensus 282 ~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 342 (1367)
++..-.+.+.+-..+-+|+-|.--. -+...-+.+...+.. ...|..||+.|.+..+|..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 4445567788888899999997421 111222333333332 245788999999999998654
No 346
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.58 E-value=0.22 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 347
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.58 E-value=0.36 Score=55.94 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.6
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHc
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+..+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 348
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.55 E-value=0.37 Score=52.97 Aligned_cols=90 Identities=13% Similarity=0.085 Sum_probs=46.7
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH--HHHHHHHHHhhhcCC--CCCCCh-HHHHHHH
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVK--RLTKTILTSIVASQN--VGDPSL-NSLQKEL 288 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~il~~l~~~~~--~~~~~~-~~~~~~l 288 (1367)
+.+++.++|++|+||||++..++... ...=..+.+++.. .+... +-++...+..+.... ....+. ......+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 46899999999999999988887632 2221234455433 23222 222333444332210 011122 2223344
Q ss_pred HHHhCCCceEEEEEcCCC
Q 000660 289 SKQLSGKKFLLVLDDVWN 306 (1367)
Q Consensus 289 ~~~l~~k~~LlVlDdv~~ 306 (1367)
.....+..=++++|-.-.
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 443334445788887744
No 349
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.54 E-value=1.4 Score=42.88 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChhHHHHHHHHHHHhhchhhhH
Q 000660 5 GEAILTASVDLLVNKLASEGVLFFARQKEIEADLMRWANMLEMIKAVLDDAEEKRR-TAPSVNLWLGELQNLAYDVEDLL 83 (1367)
Q Consensus 5 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~lr~~~yd~ed~l 83 (1367)
|+.+.+|+++.+++.+...+..........+.-+++|..++..|.-++++.+.-.. -+..-+.-++++.+..-++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 44444455555555555444444555667889999999999999999999876532 23333777889999999999999
Q ss_pred HHHH
Q 000660 84 DEFQ 87 (1367)
Q Consensus 84 D~~~ 87 (1367)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8864
No 350
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.53 E-value=0.26 Score=56.06 Aligned_cols=45 Identities=24% Similarity=0.175 Sum_probs=33.2
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 190 VYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
++|+...++++.+.+..-.. .-.-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777776654321 2244689999999999999999864
No 351
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.51 E-value=0.088 Score=51.60 Aligned_cols=24 Identities=42% Similarity=0.439 Sum_probs=21.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
..||.|.|.+|+||||||+++...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999974
No 352
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.51 E-value=0.28 Score=50.21 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
++.++|++|+||||+++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998863
No 353
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.50 E-value=0.29 Score=56.83 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=49.7
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcC-----CCCCCChH-----H
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQ-----NVGDPSLN-----S 283 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~-----~ 283 (1367)
+...++|+|..|+|||||++.+..... ....++|....+..++.++....+....... ..+..... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 346799999999999999998886322 2234455443344455555554444331110 00111111 1
Q ss_pred HHHHHHHHh--CCCceEEEEEcC
Q 000660 284 LQKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 284 ~~~~l~~~l--~~k~~LlVlDdv 304 (1367)
..-.+.+++ +++++|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 112233333 589999999999
No 354
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.50 E-value=0.087 Score=58.28 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=43.7
Q ss_pred cCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHc
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+..++|.++.++++++.+.......+.+-+|+.++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998765443456789999999999999999999876
No 355
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.47 E-value=0.057 Score=53.30 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 000660 217 VIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 356
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.46 E-value=0.32 Score=56.29 Aligned_cols=51 Identities=35% Similarity=0.338 Sum_probs=35.9
Q ss_pred cCcccccchhHHHHHHHHh----c--C--CCCCC----CCceEEEEeCCCCCcHHHHHHHHHc
Q 000660 187 EAKVYGRETEKKDVVELLL----R--D--DLSND----GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~----~--~--~~~~~----~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+..++|.++.++.+...+. . . ....+ .....+.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 4568999999988876552 1 0 00000 1135788999999999999999986
No 357
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.42 E-value=0.39 Score=55.31 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=49.9
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCccccc--ccceEEEEEeCCccCHH--HHHHHHHHHhhhcCCCCCCChHHHHHHHH
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQD--HFDLKAWTCVSDDFDVK--RLTKTILTSIVASQNVGDPSLNSLQKELS 289 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~~~~--~~~~~il~~l~~~~~~~~~~~~~~~~~l~ 289 (1367)
..++|.++|+.|+||||.+..++....... +=..+..+++. .+... .-++...+.++.+.. .....+.+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHH
Confidence 357999999999999999988876322111 11223344433 33322 224444444443322 2334455555555
Q ss_pred HHhCCCceEEEEEcCCCC
Q 000660 290 KQLSGKKFLLVLDDVWNR 307 (1367)
Q Consensus 290 ~~l~~k~~LlVlDdv~~~ 307 (1367)
+. .+.-+|++|.....
T Consensus 251 ~~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 251 QS--KDFDLVLVDTIGKS 266 (388)
T ss_pred Hh--CCCCEEEEcCCCCC
Confidence 43 34558888988543
No 358
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.40 E-value=0.0023 Score=66.06 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=55.9
Q ss_pred CcceeEEcccCCCCCCcccCCCCCCcccEEEEecCCCCCCCCCCCCCCCCCceeecCCCCceeeCccccCCCCCCCcccc
Q 000660 643 NLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCL 722 (1367)
Q Consensus 643 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~Ls~~~~~~~lp~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 722 (1367)
+.+.|+..|+++..+. +. ..++.|++|.||-|. +..+.++..+++|++|+|..|. |..+..-+| .+.+|+|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic-~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~-I~sldEL~Y----LknlpsL 90 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--IC-EKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNC-IESLDELEY----LKNLPSL 90 (388)
T ss_pred HhhhhcccCCCccHHH--HH-HhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcc-cccHHHHHH----HhcCchh
Confidence 6788888888776552 22 237889999999987 6788899999999999999885 555443332 2335555
Q ss_pred ceecccccc
Q 000660 723 KTLLFENMQ 731 (1367)
Q Consensus 723 ~~L~l~~~~ 731 (1367)
..|++.+.|
T Consensus 91 r~LWL~ENP 99 (388)
T KOG2123|consen 91 RTLWLDENP 99 (388)
T ss_pred hhHhhccCC
Confidence 555555543
No 359
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.38 E-value=0.27 Score=49.06 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=61.4
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEE--EEEeCCccCHHHHHHHHHHHhhhcC------CCC-C-----CC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKA--WTCVSDDFDVKRLTKTILTSIVASQ------NVG-D-----PS 280 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~~s~~~~~~~~~~~il~~l~~~~------~~~-~-----~~ 280 (1367)
...|-|++..|.||||.|..+.-... ...+...+ |+-..........+... .+.-.. ... . ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~-~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL-GHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH-HCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 35778888899999999988765321 12222211 22222222333333332 111000 000 0 01
Q ss_pred hHHHHHHHHHHhCCCce-EEEEEcCCC---CCchhhhhhccccCCCCCCcEEEEEcCch
Q 000660 281 LNSLQKELSKQLSGKKF-LLVLDDVWN---RNYDDWVQLRRPFEVGAPGSKIIVTTRNQ 335 (1367)
Q Consensus 281 ~~~~~~~l~~~l~~k~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 335 (1367)
.....+..++.+...+| |+|||.+-. -..-+.+.+...+.....+..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22233444555555555 999999831 11223445555565556678999999985
No 360
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.35 E-value=0.3 Score=50.90 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=46.7
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEE-------EEEeCCccCHHHH--HHHHHHHhhhcCCCCC-----
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKA-------WTCVSDDFDVKRL--TKTILTSIVASQNVGD----- 278 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-------wv~~s~~~~~~~~--~~~il~~l~~~~~~~~----- 278 (1367)
.+..+|.++||+|.||||..|.++.+..-+..-.-++ -+....+.|+++. .++.+++.....+...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 4567888999999999999999987433222111111 1222333455543 4667777665544222
Q ss_pred ---CChHHHHHHHHHHhCCCce
Q 000660 279 ---PSLNSLQKELSKQLSGKKF 297 (1367)
Q Consensus 279 ---~~~~~~~~~l~~~l~~k~~ 297 (1367)
...++....+.++-..-+|
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~ 118 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDY 118 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCE
Confidence 1234555555554333334
No 361
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.35 E-value=0.17 Score=53.04 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=50.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-cCHHHHHHHHHHHhhhcC-----CCCCCCh-H-----
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVKRLTKTILTSIVASQ-----NVGDPSL-N----- 282 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~-----~~~~~~~-~----- 282 (1367)
...++|.|.+|+|||+|++.+.+... -+..+++.+.+. ..+.++.+++...-..+. ....... .
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 46788999999999999999987532 233477777655 345555555533211111 0011111 1
Q ss_pred ----HHHHHHHHHhCCCceEEEEEcC
Q 000660 283 ----SLQKELSKQLSGKKFLLVLDDV 304 (1367)
Q Consensus 283 ----~~~~~l~~~l~~k~~LlVlDdv 304 (1367)
...+.++. ++|++|+++||+
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred ccchhhhHHHhh--cCCceeehhhhh
Confidence 12233333 699999999999
No 362
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.33 E-value=0.51 Score=48.01 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=69.2
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeC-------------------Ccc-----------------
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVS-------------------DDF----------------- 257 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-------------------~~~----------------- 257 (1367)
+..|++|+|+.|+|||||.+.+-.=+ ..=...+|+.-. +.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE---~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE---EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc---CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 34699999999999999999986422 222344554321 111
Q ss_pred --------CHHHHHHHHHHHhhhcCCC-----CCCChHHHHHHHHHHhCCCceEEEEEcCCCC-CchhhhhhccccCC-C
Q 000660 258 --------DVKRLTKTILTSIVASQNV-----GDPSLNSLQKELSKQLSGKKFLLVLDDVWNR-NYDDWVQLRRPFEV-G 322 (1367)
Q Consensus 258 --------~~~~~~~~il~~l~~~~~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~ 322 (1367)
..++...++++.++..... .-..-++..-.|.+.|.=++=++.+|..-+. +++-..++...+.. .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 1223333344444332211 1112234445677888888889999998543 22223333322222 2
Q ss_pred CCCcEEEEEcCchhHHhhh
Q 000660 323 APGSKIIVTTRNQEVAEIM 341 (1367)
Q Consensus 323 ~~gs~ilvTtR~~~v~~~~ 341 (1367)
..|-.+|+.|..-..|..+
T Consensus 184 ~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HcCCeEEEEechhHHHHHh
Confidence 4567778888776555544
No 363
>PRK05439 pantothenate kinase; Provisional
Probab=93.29 E-value=0.37 Score=53.43 Aligned_cols=81 Identities=17% Similarity=0.061 Sum_probs=43.6
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccc--cceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDH--FDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSK 290 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 290 (1367)
+..-+|+|.|.+|+||||+|+.+..- .... -..+.-++..+-+-....+.+- ..+......+..+.+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHH
Confidence 46789999999999999999988762 2211 1123334443332222222110 00100111134566777777776
Q ss_pred HhCCCc
Q 000660 291 QLSGKK 296 (1367)
Q Consensus 291 ~l~~k~ 296 (1367)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666665
No 364
>PRK14974 cell division protein FtsY; Provisional
Probab=93.29 E-value=0.45 Score=53.68 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=46.3
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccC--HHHHHHHHHHHhhhcCCC--CCCCh-HHHHHHH
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD--VKRLTKTILTSIVASQNV--GDPSL-NSLQKEL 288 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~--~~~~~-~~~~~~l 288 (1367)
+..+|.++|++|+||||++..++.... ...+ .++.+. .+.+. ...-++.....++..... ...+. ..+.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888775322 1223 233333 22222 222344455555432211 11222 2223333
Q ss_pred HHHhCCCceEEEEEcCCCC
Q 000660 289 SKQLSGKKFLLVLDDVWNR 307 (1367)
Q Consensus 289 ~~~l~~k~~LlVlDdv~~~ 307 (1367)
...-....=+|++|-....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3322222238889988544
No 365
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.27 E-value=0.47 Score=51.35 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=34.2
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHH
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKT 265 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 265 (1367)
...+++.|.|.+|+|||++|.++.... . ..=..++|++... +..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 467899999999999999999876421 1 2234677887654 44455444
No 366
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.26 E-value=0.059 Score=54.52 Aligned_cols=25 Identities=48% Similarity=0.474 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCc
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDK 239 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (1367)
..+|+|-||=|+||||||+.+.+..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4789999999999999999999854
No 367
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=1 Score=46.31 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=76.0
Q ss_pred CCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHH
Q 000660 211 NDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSK 290 (1367)
Q Consensus 211 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 290 (1367)
+..+.+-+.++|++|.|||-||++|+++ ..+-++.||... -+++-| ++. ..-..++.-.-+
T Consensus 177 GIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgse---lvqk~i-----geg---srmvrelfvmar- 237 (404)
T KOG0728|consen 177 GIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGSE---LVQKYI-----GEG---SRMVRELFVMAR- 237 (404)
T ss_pred CCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechHH---HHHHHh-----hhh---HHHHHHHHHHHH-
Confidence 3345677889999999999999999973 234566776531 111111 100 000111111111
Q ss_pred HhCCCceEEEEEcCCCCC-----------chh---hhhhccccCC--CCCCcEEEEEcCchhHHhh--hC---CCCceeC
Q 000660 291 QLSGKKFLLVLDDVWNRN-----------YDD---WVQLRRPFEV--GAPGSKIIVTTRNQEVAEI--MG---TVPSYQL 349 (1367)
Q Consensus 291 ~l~~k~~LlVlDdv~~~~-----------~~~---~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~--~~---~~~~~~l 349 (1367)
..-+-.|.+|.+.+.. .+. .-.+...+.. ..+.-+||..|..-++.+. .. -...++.
T Consensus 238 --ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkief 315 (404)
T KOG0728|consen 238 --EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEF 315 (404)
T ss_pred --hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccC
Confidence 2356677788774321 011 1112222222 2345678877665444322 12 2356777
Q ss_pred CCCChHHHHHHHHhhhcC----CcchHHHHHHHH
Q 000660 350 KKLSDNDCLAVFAQHSLG----SHKLLEEIGKKI 379 (1367)
Q Consensus 350 ~~L~~~~~~~lf~~~~~~----~~~~~~~~~~~i 379 (1367)
++-+++.-.++++-+.-. ..-++..+|+++
T Consensus 316 p~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm 349 (404)
T KOG0728|consen 316 PPPNEEARLDILKIHSRKMNLTRGINLRKIAEKM 349 (404)
T ss_pred CCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhC
Confidence 787777777777655422 223445555444
No 368
>PRK06762 hypothetical protein; Provisional
Probab=93.24 E-value=0.069 Score=54.30 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.++|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 369
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.22 E-value=0.1 Score=48.45 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=35.2
Q ss_pred cccccchhHHHHHHHHhcCCC-CCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 189 KVYGRETEKKDVVELLLRDDL-SNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.++|..-..+.+++++..--. ....+.-|++.+|+.|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 467776666666665543211 13457889999999999999988888764
No 370
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.21 E-value=0.51 Score=53.24 Aligned_cols=90 Identities=14% Similarity=0.050 Sum_probs=51.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
+.+++.|+|+.|+||||++..++.....++ ..+.+|+..... ....-++...+.++.+.. ...+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHHH
Confidence 468999999999999999998876432221 235555553221 223344444444443221 2345556655554432
Q ss_pred C-CCceEEEEEcCCC
Q 000660 293 S-GKKFLLVLDDVWN 306 (1367)
Q Consensus 293 ~-~k~~LlVlDdv~~ 306 (1367)
. +..=+|++|-...
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3345788888754
No 371
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.20 E-value=0.097 Score=57.16 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=18.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
..|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36889999999999999999874
No 372
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.17 E-value=0.055 Score=68.41 Aligned_cols=187 Identities=16% Similarity=0.127 Sum_probs=83.2
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCC--CCCCChHHHHHHHHHHh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQN--VGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~l~~~l 292 (1367)
.+++.|.|+.|.||||+.+.+...... .....+|.+..... -..+.++...++.... ........-...+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 478999999999999999998643100 00111111111100 0001111111110000 00011111111222222
Q ss_pred C--CCceEEEEEcCCCCC-chhhhhh----ccccCCCCCCcEEEEEcCchhHHhhhCCCCceeCCCCChH-HHHHHHHhh
Q 000660 293 S--GKKFLLVLDDVWNRN-YDDWVQL----RRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDN-DCLAVFAQH 364 (1367)
Q Consensus 293 ~--~k~~LlVlDdv~~~~-~~~~~~l----~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~ 364 (1367)
. ..+-|+++|..-... +.+...+ ...+. ..|+.+|+||...++.........+....+..+ +... |..+
T Consensus 398 ~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Yk 474 (771)
T TIGR01069 398 SKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYK 474 (771)
T ss_pred HhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEE
Confidence 2 478899999986542 2223233 22222 357899999999877543322111111111111 1000 0011
Q ss_pred hcCCcchHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHh
Q 000660 365 SLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLC 411 (1367)
Q Consensus 365 ~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~ 411 (1367)
...+.+ -..-|-+|++++ |+|-.|.--|..+... ...+++.++.
T Consensus 475 l~~G~~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 475 LLKGIP-GESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred ECCCCC-CCcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 100111 134566677776 7888887777766543 2334444443
No 373
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.14 E-value=0.057 Score=59.29 Aligned_cols=97 Identities=24% Similarity=0.318 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCC
Q 000660 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNV 276 (1367)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~ 276 (1367)
...+++.+... -+-+.++|+.|+|||++++....... ...| ...-++.|...+...++ +++++-.....
T Consensus 22 ~~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~- 90 (272)
T PF12775_consen 22 YSYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQ-KIIESKLEKRR- 90 (272)
T ss_dssp HHHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHH-HCCCTTECECT-
T ss_pred HHHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHH-HHHhhcEEcCC-
Confidence 45566666654 25668999999999999999886422 1222 23345666554444333 22222110000
Q ss_pred CCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhh
Q 000660 277 GDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWV 313 (1367)
Q Consensus 277 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~ 313 (1367)
. ....--.+|+.++.+||+--...+.|.
T Consensus 91 --~-------~~~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 91 --G-------RVYGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp --T-------EEEEEESSSEEEEEEETTT-S---TTS
T ss_pred --C-------CCCCCCCCcEEEEEecccCCCCCCCCC
Confidence 0 000001368899999999554444433
No 374
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.14 E-value=0.48 Score=51.78 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCC
Q 000660 197 KKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNV 276 (1367)
Q Consensus 197 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~ 276 (1367)
.+.++..+.+. ....-++|+|+.|.|||||.+.+..... .....+++.-.+ ....+-..++......-...
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEE-eecchhHHHHHHHhcccccc
Confidence 44455555432 2356789999999999999999997422 222233331100 00000112232222111100
Q ss_pred ------CC-CChHHHHHHHHHHhC-CCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHHh
Q 000660 277 ------GD-PSLNSLQKELSKQLS-GKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAE 339 (1367)
Q Consensus 277 ------~~-~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 339 (1367)
+. ..... ...+...+. ..+=++++|.+-.. +.+..+...+ ..|..||+||.+..+..
T Consensus 169 ~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 00 11111 112333332 47789999998443 4455555444 25778999999866644
No 375
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.13 E-value=0.66 Score=51.60 Aligned_cols=54 Identities=20% Similarity=0.132 Sum_probs=36.3
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHh
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSI 270 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l 270 (1367)
...++.|.|.+|+||||+|.+++.... ..+=..++|++... +..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 346888999999999999999876422 22123577877655 4455666655543
No 376
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.12 E-value=0.51 Score=48.25 Aligned_cols=119 Identities=18% Similarity=0.115 Sum_probs=60.3
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhh--cCCC--CC--------CCh-
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVA--SQNV--GD--------PSL- 281 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~--~~~~--~~--------~~~- 281 (1367)
-.+++|+|..|.|||||++.++.... .....+++.-....+.. ..+-..++- +... .. -+-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 46899999999999999999986421 22334443211100000 011111110 0000 00 111
Q ss_pred HHHHHHHHHHhCCCceEEEEEcCCCC-CchhhhhhccccCCC-CCCcEEEEEcCchhHHh
Q 000660 282 NSLQKELSKQLSGKKFLLVLDDVWNR-NYDDWVQLRRPFEVG-APGSKIIVTTRNQEVAE 339 (1367)
Q Consensus 282 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 339 (1367)
+...-.+...+-.++=++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 11222455666778889999997443 222333333333321 23677888888876544
No 377
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.06 E-value=0.32 Score=52.38 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.3
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.+..+++|.|+.|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999863
No 378
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.04 E-value=0.48 Score=51.47 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 000660 217 VIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999875
No 379
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.04 E-value=0.052 Score=50.47 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=18.1
Q ss_pred EEEeCCCCCcHHHHHHHHHcCcccccccc
Q 000660 218 IPIIGMGGLGKTTLAQLVYNDKQVQDHFD 246 (1367)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 246 (1367)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 56899999999999999997 3455564
No 380
>PHA00729 NTP-binding motif containing protein
Probab=93.04 E-value=0.12 Score=54.02 Aligned_cols=25 Identities=48% Similarity=0.566 Sum_probs=21.9
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+...|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999874
No 381
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.4 Score=49.57 Aligned_cols=56 Identities=23% Similarity=0.186 Sum_probs=38.2
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEeCCCCCcHHHHHHHHHcCccccccc
Q 000660 188 AKVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF 245 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 245 (1367)
.++-|-.++++++.+...-.-. -+....+-|..+|++|.|||-+|++|+| +....|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 3566777888887775532211 0233456678999999999999999999 444444
No 382
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.98 E-value=0.41 Score=51.08 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=39.6
Q ss_pred cCcccccchhHHHHHHHHhcCCC-CCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 187 EAKVYGRETEKKDVVELLLRDDL-SNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+..++|..-.++.|+..+..--. ....+.-|++.+|..|+||.-+|+.++++
T Consensus 81 ~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n 133 (344)
T KOG2170|consen 81 ARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAEN 133 (344)
T ss_pred HHHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHH
Confidence 34578888778888877764221 13457889999999999999999999875
No 383
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.96 E-value=0.53 Score=51.30 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=46.0
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHH--HHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVK--RLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
..+++++|.+|+||||+++.+......+. ..+.+++.. .+... .-++...+.++.+.. ...+.+.+.+.+...-
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D-~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~ 150 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFK 150 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecC-CCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHH
Confidence 46899999999999999998875321111 234455443 22211 112222222221111 1234445554444332
Q ss_pred C-CCceEEEEEcCCCC
Q 000660 293 S-GKKFLLVLDDVWNR 307 (1367)
Q Consensus 293 ~-~k~~LlVlDdv~~~ 307 (1367)
+ .+.=++++|..-..
T Consensus 151 ~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 151 EEARVDYILIDTAGKN 166 (270)
T ss_pred hcCCCCEEEEECCCCC
Confidence 2 23458889988543
No 384
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.92 E-value=0.39 Score=55.90 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=52.7
Q ss_pred CceEEEEeCCCCCcHHHHH-HHHHcCccc-----ccccceEEEEEeCCccCHHHHHHHHHHHhhh-cCC------CCCCC
Q 000660 214 GFSVIPIIGMGGLGKTTLA-QLVYNDKQV-----QDHFDLKAWTCVSDDFDVKRLTKTILTSIVA-SQN------VGDPS 280 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~-~~~------~~~~~ 280 (1367)
+...++|.|..|+|||+|| ..+.+...+ .++-+.++++-+.+..+...-+.+.+++-+. ... .+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 556665322 1234567888888775443334444444331 110 01111
Q ss_pred h---------HHHHHHHHHHhCCCceEEEEEcCCC
Q 000660 281 L---------NSLQKELSKQLSGKKFLLVLDDVWN 306 (1367)
Q Consensus 281 ~---------~~~~~~l~~~l~~k~~LlVlDdv~~ 306 (1367)
. -.+.+.++. +++.+|+|+||+-.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCCEEEEEcCchH
Confidence 1 122333332 58999999999943
No 385
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.90 E-value=0.32 Score=52.43 Aligned_cols=91 Identities=19% Similarity=0.279 Sum_probs=54.2
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCccc--ccccceEEEEEeCCcc-CHHHHHHHHHHHhhhcCC------CCCCChH--
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQV--QDHFDLKAWTCVSDDF-DVKRLTKTILTSIVASQN------VGDPSLN-- 282 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~------~~~~~~~-- 282 (1367)
+-..++|.|-.|+|||+|+..+.++..+ +++-+.++++-+.+.. ++.++..++.+.-..... .+.....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3456799999999999999998875431 2234677888887754 445555555443111110 0111111
Q ss_pred ---HHHHHHHHHh--C-CCceEEEEEcC
Q 000660 283 ---SLQKELSKQL--S-GKKFLLVLDDV 304 (1367)
Q Consensus 283 ---~~~~~l~~~l--~-~k~~LlVlDdv 304 (1367)
...-.+.+++ + ++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122334444 2 78999999999
No 386
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.89 E-value=0.49 Score=51.88 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=29.8
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCC
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 255 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 255 (1367)
...+++.|.|.+|+|||++|.+++... .+. =..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~-a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ-ASR-GNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH-HhC-CCcEEEEEecC
Confidence 456899999999999999999976532 111 23567777754
No 387
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.88 E-value=0.38 Score=52.97 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.7
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHc
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999987754
No 388
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.88 E-value=0.091 Score=55.88 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.|.|+|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999863
No 389
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.87 E-value=0.14 Score=48.62 Aligned_cols=41 Identities=22% Similarity=0.114 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCc
Q 000660 195 TEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 239 (1367)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (1367)
++.+++.+.|...- ....+|.+.|.-|+||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34455555554321 124689999999999999999999753
No 390
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.83 E-value=0.26 Score=56.30 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=50.1
Q ss_pred cCcccccchhHHHHHHHHhcC--------CCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccccccc---ceEEEEEe-C
Q 000660 187 EAKVYGRETEKKDVVELLLRD--------DLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF---DLKAWTCV-S 254 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~-s 254 (1367)
+..++|.++.++.+..++... ..........|.++|++|+|||++|+.+.... ...| +...|... -
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l--~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh--CChheeecchhhccCCc
Confidence 345899999999988877531 00001124678999999999999999998742 2223 22212211 1
Q ss_pred CccCHHHHHHHHHHHh
Q 000660 255 DDFDVKRLTKTILTSI 270 (1367)
Q Consensus 255 ~~~~~~~~~~~il~~l 270 (1367)
...+.+.+.+++++..
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 1235666666666554
No 391
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.81 E-value=0.061 Score=49.69 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=18.6
Q ss_pred EEEeCCCCCcHHHHHHHHHcC
Q 000660 218 IPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~ 238 (1367)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998864
No 392
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.80 E-value=0.6 Score=53.71 Aligned_cols=84 Identities=19% Similarity=0.168 Sum_probs=48.4
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCC----CCCChHHHHHHH
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNV----GDPSLNSLQKEL 288 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 288 (1367)
....++.|.|.+|+|||||+.+++... ...-..++|++... +..++. .-+++++..... ...+++.+.+.+
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 346799999999999999999998642 22224567776543 333322 223344322110 123344444444
Q ss_pred HHHhCCCceEEEEEcC
Q 000660 289 SKQLSGKKFLLVLDDV 304 (1367)
Q Consensus 289 ~~~l~~k~~LlVlDdv 304 (1367)
.+ .+.-+||+|.+
T Consensus 155 ~~---~~~~lVVIDSI 167 (372)
T cd01121 155 EE---LKPDLVIIDSI 167 (372)
T ss_pred Hh---cCCcEEEEcch
Confidence 32 35568888887
No 393
>PRK03839 putative kinase; Provisional
Probab=92.76 E-value=0.08 Score=54.62 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999974
No 394
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.73 E-value=0.071 Score=30.22 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=11.8
Q ss_pred CccceEEcCCCCccccC
Q 000660 596 QRLRAFSLRGYHIFELP 612 (1367)
Q Consensus 596 ~~Lr~L~L~~~~i~~lP 612 (1367)
++||.|+|++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999999887
No 395
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=1 Score=47.66 Aligned_cols=176 Identities=18% Similarity=0.214 Sum_probs=90.4
Q ss_pred CcccccchhHHHHHHHHhcCCC------CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDL------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKR 261 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (1367)
.++-|-+..++.|.+...-.-. ......+-|.++|++|.||+.||++|+.... .-| .+||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STF-----FSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STF-----FSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cce-----EEeehH-----
Confidence 4567877777777765432100 0113468899999999999999999997532 222 334332
Q ss_pred HHHHHHHHhhhcCCCCCCChHHHHHHHHHHh-CCCceEEEEEcCCCC-------Cchhhhhhcccc-------CCCCCCc
Q 000660 262 LTKTILTSIVASQNVGDPSLNSLQKELSKQL-SGKKFLLVLDDVWNR-------NYDDWVQLRRPF-------EVGAPGS 326 (1367)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------~~~~~~~l~~~l-------~~~~~gs 326 (1367)
+++....+ ..+.+...+.+.- ++|+-+|.+|.+... +.+.-..+...| .....|.
T Consensus 201 ---DLvSKWmG-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gv 270 (439)
T KOG0739|consen 201 ---DLVSKWMG-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGV 270 (439)
T ss_pred ---HHHHHHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCce
Confidence 11111111 1123333333332 368889999988431 111222222222 1233455
Q ss_pred EEEEEcCchhHHhhh---CCCCceeCCCCChHHHH-HHHHhhhcCCcch-HHHHHHHHHHhcCCC
Q 000660 327 KIIVTTRNQEVAEIM---GTVPSYQLKKLSDNDCL-AVFAQHSLGSHKL-LEEIGKKIVTKCDGL 386 (1367)
Q Consensus 327 ~ilvTtR~~~v~~~~---~~~~~~~l~~L~~~~~~-~lf~~~~~~~~~~-~~~~~~~i~~~~~g~ 386 (1367)
-|+-.|..+-+.+.. +-...+.+ +|++..|. .+|+-+....+.. .+.-.++++++..|.
T Consensus 271 LVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 271 LVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred EEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCC
Confidence 566677766554332 11223333 45555554 4566555443222 233455666666654
No 396
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.59 E-value=0.099 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHc
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999985
No 397
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.54 E-value=0.42 Score=59.51 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=55.3
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCC----CCCCChHHHHHHH
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQN----VGDPSLNSLQKEL 288 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l 288 (1367)
...+++-|+|.+|+||||||.+++.... ..=..++|+.....++.. .+++++.... ......+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 4578999999999999999987654221 222457899887777643 5566654321 0233445555556
Q ss_pred HHHhCC-CceEEEEEcC
Q 000660 289 SKQLSG-KKFLLVLDDV 304 (1367)
Q Consensus 289 ~~~l~~-k~~LlVlDdv 304 (1367)
...++. +--|||+|.+
T Consensus 131 ~~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 131 DMLIRSGALDIVVIDSV 147 (790)
T ss_pred HHHhhcCCCeEEEEcch
Confidence 665554 4558999988
No 398
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.52 E-value=0.3 Score=54.90 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.0
Q ss_pred EEEeCCCCCcHHHHHHHHHcCc
Q 000660 218 IPIIGMGGLGKTTLAQLVYNDK 239 (1367)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~~ 239 (1367)
+.+.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999998643
No 399
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.52 E-value=0.51 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHc
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
++++|.|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999874
No 400
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.51 E-value=0.032 Score=59.35 Aligned_cols=175 Identities=14% Similarity=0.139 Sum_probs=79.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCC--CCCChHHHHHHHHHH
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNV--GDPSLNSLQKELSKQ 291 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~l~~~ 291 (1367)
+.+++.|.|+.|.||||+.+.+..-. +- +..-.+|..... .......++..++..... .......-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~-~l--a~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIV-LM--AQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-HH--HHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 35799999999999999998875321 00 000011211110 000112222222211110 111222222233333
Q ss_pred h--CCCceEEEEEcCCCC---C---chhhhhhccccCCCCCCcEEEEEcCchhHHhhhCCCC---ceeCCCCChH--HHH
Q 000660 292 L--SGKKFLLVLDDVWNR---N---YDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVP---SYQLKKLSDN--DCL 358 (1367)
Q Consensus 292 l--~~k~~LlVlDdv~~~---~---~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~---~~~l~~L~~~--~~~ 358 (1367)
+ -.++-|+++|..... - ...|..+ ..+.. ..|+.+|+||...++...+.... ..++.....+ +..
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~ 181 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL 181 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE
Confidence 3 356889999998332 1 0112221 22222 34788999999877766543221 1222111111 111
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHhcCCChHHHHHHHhhhc
Q 000660 359 AVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLR 398 (1367)
Q Consensus 359 ~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~ 398 (1367)
.|..+..... .....|-++++++ |+|-.+..-|..+.
T Consensus 182 -~~~Y~l~~G~-~~~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 182 -TMLYKVEKGA-CDQSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred -eEEEEEeeCC-CCCcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 0111111111 1134466666666 88888877776553
No 401
>PRK00625 shikimate kinase; Provisional
Probab=92.50 E-value=0.088 Score=53.29 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.|.++||+|+||||+|+.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 402
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.43 E-value=0.28 Score=57.21 Aligned_cols=50 Identities=32% Similarity=0.242 Sum_probs=34.9
Q ss_pred CcccccchhHHHHHHHHhc----CCC------CCCCCceEEEEeCCCCCcHHHHHHHHHc
Q 000660 188 AKVYGRETEKKDVVELLLR----DDL------SNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~----~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
..++|.+..++.+...+.. -.. +.....+.+.++|++|+|||++|+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4589999988888655421 000 0011235688999999999999999986
No 403
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.41 E-value=0.38 Score=56.09 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=53.0
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHHhhhcCC------CCCCChH----
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVKRLTKTILTSIVASQN------VGDPSLN---- 282 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~------~~~~~~~---- 282 (1367)
+...++|.|..|+|||||+.++...... ++=+.++++-+.+.. .+.++.+++...-..... .+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 4467899999999999999988653221 111356677665543 445566665543211110 0111111
Q ss_pred -HHHHHHHHHh---CCCceEEEEEcC
Q 000660 283 -SLQKELSKQL---SGKKFLLVLDDV 304 (1367)
Q Consensus 283 -~~~~~l~~~l---~~k~~LlVlDdv 304 (1367)
...-.+.+++ +++++|+++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1222344555 679999999999
No 404
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.41 E-value=1.3 Score=48.44 Aligned_cols=130 Identities=12% Similarity=0.036 Sum_probs=71.3
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccc------------cccceEEEEE-eCCccCHHHH
Q 000660 196 EKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQ------------DHFDLKAWTC-VSDDFDVKRL 262 (1367)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~F~~~~wv~-~s~~~~~~~~ 262 (1367)
.-+++...+..+. -.....++|+.|+||+++|..++...-.. .|-|. .|+. ....
T Consensus 5 ~~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~-~~i~p~~~~------ 72 (290)
T PRK05917 5 AWEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDI-HEFSPQGKG------ 72 (290)
T ss_pred HHHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCE-EEEecCCCC------
Confidence 3456666665432 24567799999999999998886532110 01111 1111 0000
Q ss_pred HHHHHHHhhhcCCCCCCChHHHHHHHHHHh-----CCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCc-hh
Q 000660 263 TKTILTSIVASQNVGDPSLNSLQKELSKQL-----SGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN-QE 336 (1367)
Q Consensus 263 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~ 336 (1367)
..-.+++.. .+.+.+ .+++=++|+|++..-+.+.+..+...+.....++.+|++|.+ ..
T Consensus 73 --------------~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ 137 (290)
T PRK05917 73 --------------RLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQR 137 (290)
T ss_pred --------------CcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhh
Confidence 001233322 222222 245558899999888778888888888766666666666655 44
Q ss_pred HHhh-hCCCCceeCCCC
Q 000660 337 VAEI-MGTVPSYQLKKL 352 (1367)
Q Consensus 337 v~~~-~~~~~~~~l~~L 352 (1367)
+... .+-...+.+.++
T Consensus 138 ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 138 LPPTIRSRSLSIHIPME 154 (290)
T ss_pred CcHHHHhcceEEEccch
Confidence 4322 222344555554
No 405
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.39 E-value=0.41 Score=55.53 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=48.1
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCC------CCCCChHH----
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQN------VGDPSLNS---- 283 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~------~~~~~~~~---- 283 (1367)
+...++|+|..|+|||||++.+..... ....++.....+.-.+.++..+.+..-+.... .+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 346789999999999999999987432 12222322222333445555544443221110 01111111
Q ss_pred -HHHHHHHHh--CCCceEEEEEcC
Q 000660 284 -LQKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 284 -~~~~l~~~l--~~k~~LlVlDdv 304 (1367)
....+.+++ +++++|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 122234444 589999999999
No 406
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.34 E-value=0.24 Score=50.17 Aligned_cols=119 Identities=14% Similarity=0.093 Sum_probs=61.6
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEE--EEEeCCccCHHHHHHHHHHHh-----hhc-CCCC-C-----CC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKA--WTCVSDDFDVKRLTKTILTSI-----VAS-QNVG-D-----PS 280 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--wv~~s~~~~~~~~~~~il~~l-----~~~-~~~~-~-----~~ 280 (1367)
...|-|+|..|-||||.|..+.-... ..-+...+ |+--.........++.+ ..+ +.. .... . ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~-g~G~~V~ivQFlKg~~~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAV-GHGKKVGVVQFIKGAWSTGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHH-HCCCeEEEEEEecCCCccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHHH
Confidence 46788999999999999988765321 11122111 22222122333333321 001 000 0000 0 11
Q ss_pred hHHHHHHHHHHhCCCce-EEEEEcCCC---CCchhhhhhccccCCCCCCcEEEEEcCch
Q 000660 281 LNSLQKELSKQLSGKKF-LLVLDDVWN---RNYDDWVQLRRPFEVGAPGSKIIVTTRNQ 335 (1367)
Q Consensus 281 ~~~~~~~l~~~l~~k~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 335 (1367)
.....+..++.+...+| |+|||.+-. -...+.+++...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233444555655555 999999822 11233455666665556678999999984
No 407
>PRK04040 adenylate kinase; Provisional
Probab=92.33 E-value=0.1 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.+|.|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 408
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.33 E-value=0.44 Score=55.34 Aligned_cols=87 Identities=18% Similarity=0.292 Sum_probs=50.0
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHHhhhcCC------CCCCChHH---
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVKRLTKTILTSIVASQN------VGDPSLNS--- 283 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~------~~~~~~~~--- 283 (1367)
+...++|+|..|+|||||++.+++... .+..+.+-+.... .+.++..+.+..-+.... .+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346789999999999999999997432 2344555555443 344555444443221110 01111111
Q ss_pred --HHHHHHHHh--CCCceEEEEEcC
Q 000660 284 --LQKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 284 --~~~~l~~~l--~~k~~LlVlDdv 304 (1367)
....+.+++ +++++|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 122233443 589999999999
No 409
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.30 E-value=0.16 Score=53.05 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=59.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCC--CCCChHHHHHHHHHHh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNV--GDPSLNSLQKELSKQL 292 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~l~~~l 292 (1367)
.+++.|.|+.|.||||+.+.+..-. +..+. ..+|.... .. -.+...|+..+...... .......-..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999999886421 11111 11111110 00 12222233332222110 0011111111222222
Q ss_pred --CCCceEEEEEcCCCCC-chhh----hhhccccCCCCCCcEEEEEcCchhHHhhhC
Q 000660 293 --SGKKFLLVLDDVWNRN-YDDW----VQLRRPFEVGAPGSKIIVTTRNQEVAEIMG 342 (1367)
Q Consensus 293 --~~k~~LlVlDdv~~~~-~~~~----~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 342 (1367)
..++-|+++|...... ..+. ..+...+. ..|+.+|++|...+++..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 3567899999984432 1221 12222332 23789999999998887665
No 410
>PRK06217 hypothetical protein; Validated
Probab=92.29 E-value=0.22 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCc
Q 000660 217 VIPIIGMGGLGKTTLAQLVYNDK 239 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~ 239 (1367)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999753
No 411
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.29 E-value=1.4 Score=53.63 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=35.3
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.++|+...+.++.+.+..-. ..-..|.|.|.+|+|||++|+.++..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58899888888777664321 12345789999999999999999874
No 412
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.27 E-value=0.75 Score=57.18 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=49.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccC--HHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFD--VKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
.+|+.++|+.|+||||.+.+++........-..+..+.. +.+. ..+-++...+.++.+.. ...+.+++.+.+.+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~~-~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALAA-L 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHHH-h
Confidence 579999999999999998888864211111123444443 2332 33444444455543332 23455666655553 4
Q ss_pred CCCceEEEEEcCC
Q 000660 293 SGKKFLLVLDDVW 305 (1367)
Q Consensus 293 ~~k~~LlVlDdv~ 305 (1367)
+++. +|++|-.-
T Consensus 262 ~~~D-~VLIDTAG 273 (767)
T PRK14723 262 GDKH-LVLIDTVG 273 (767)
T ss_pred cCCC-EEEEeCCC
Confidence 4443 77778775
No 413
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.23 E-value=0.57 Score=49.20 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.1
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
...+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 414
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.18 E-value=0.16 Score=50.65 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHc
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+.|.+.|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3577899999999999999986
No 415
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.16 E-value=0.36 Score=56.52 Aligned_cols=90 Identities=18% Similarity=0.219 Sum_probs=54.2
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHHhhhcCC-----C-CCCChH----
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVKRLTKTILTSIVASQN-----V-GDPSLN---- 282 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~-----~-~~~~~~---- 282 (1367)
+...++|.|.+|+|||||+.++.+... +.+-+.++++-+.+.. .+.++..++...-..... . +.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 446789999999999999998887532 2255777777776543 444555555443211110 0 111111
Q ss_pred -HHHHHHHHHh---CCCceEEEEEcC
Q 000660 283 -SLQKELSKQL---SGKKFLLVLDDV 304 (1367)
Q Consensus 283 -~~~~~l~~~l---~~k~~LlVlDdv 304 (1367)
.....+.+++ +++++|+++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1222344444 379999999999
No 416
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.15 E-value=0.15 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999864
No 417
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=0.67 Score=51.93 Aligned_cols=83 Identities=24% Similarity=0.221 Sum_probs=52.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCC----CCCChHHHHHHHH
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNV----GDPSLNSLQKELS 289 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 289 (1367)
...+|.|-|-+|+|||||..++..+.. +.- .+.+|+- .-+..++ +-.+++++..... ...+++.+...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA--~~~-~vLYVsG--EES~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLA--KRG-KVLYVSG--EESLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHH--hcC-cEEEEeC--CcCHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 568999999999999999999987432 222 5666554 3344332 2334455432221 2345555555555
Q ss_pred HHhCCCceEEEEEcCC
Q 000660 290 KQLSGKKFLLVLDDVW 305 (1367)
Q Consensus 290 ~~l~~k~~LlVlDdv~ 305 (1367)
+ .++-++|+|-+.
T Consensus 166 ~---~~p~lvVIDSIQ 178 (456)
T COG1066 166 Q---EKPDLVVIDSIQ 178 (456)
T ss_pred h---cCCCEEEEeccc
Confidence 4 578899999983
No 418
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.14 E-value=0.65 Score=53.90 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.2
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHc
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+..+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988765
No 419
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.43 Score=48.92 Aligned_cols=51 Identities=25% Similarity=0.218 Sum_probs=36.9
Q ss_pred CcccccchhHHHHHHHHhcCCC-------CCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 188 AKVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.++-|.+..++++.+...-.-. -+....+-|.++|++|.|||.||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 4567788888887776532100 03345677889999999999999999984
No 420
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.07 E-value=0.27 Score=56.76 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=50.2
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHHhhhcCC-----C-CCCChH----
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVKRLTKTILTSIVASQN-----V-GDPSLN---- 282 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~-----~-~~~~~~---- 282 (1367)
+...++|+|..|+|||||++.++... ..+.++.+-+.+.. .+.++..+++..-+.... . +.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34678999999999999999998632 12455556565543 334455554433211110 0 111111
Q ss_pred -HHHHHHHHHh--CCCceEEEEEcC
Q 000660 283 -SLQKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 283 -~~~~~l~~~l--~~k~~LlVlDdv 304 (1367)
...-.+.+++ +++++|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1112233443 589999999999
No 421
>PRK08149 ATP synthase SpaL; Validated
Probab=92.04 E-value=0.4 Score=55.59 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=49.3
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHHhhhcC------CCCCCChH----
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD-DFDVKRLTKTILTSIVASQ------NVGDPSLN---- 282 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~~l~~~~------~~~~~~~~---- 282 (1367)
+...++|+|..|+|||||++.++.... -+..+...+.. ..++.++..+.+....... ..+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346789999999999999999987432 22333333332 3355566665555322111 00111111
Q ss_pred -HHHHHHHHHh--CCCceEEEEEcC
Q 000660 283 -SLQKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 283 -~~~~~l~~~l--~~k~~LlVlDdv 304 (1367)
.....+.+++ ++|++|+++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 1222233333 589999999999
No 422
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.98 E-value=0.1 Score=53.41 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 423
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.97 E-value=0.14 Score=52.49 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.2
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
...+|.|+|++|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999874
No 424
>PRK04328 hypothetical protein; Provisional
Probab=91.91 E-value=0.5 Score=51.48 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD 256 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 256 (1367)
...+++.|.|.+|+|||+||.++.... .+ .-...+|++....
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~-~~-~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNG-LQ-MGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-cCCcEEEEEeeCC
Confidence 456899999999999999999876532 22 2345788877653
No 425
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.87 E-value=0.13 Score=52.94 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 426
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.86 E-value=0.44 Score=53.26 Aligned_cols=86 Identities=17% Similarity=0.270 Sum_probs=48.0
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeC-CccCHHHHHHHHHHHhhhcC------CCCCCChH-----
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVS-DDFDVKRLTKTILTSIVASQ------NVGDPSLN----- 282 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~il~~l~~~~------~~~~~~~~----- 282 (1367)
...++|+|..|.|||||++.+..... -+..+..-+. +..++.++..+.+..-.... ..+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 46789999999999999999987432 1233333333 23455555555544322111 00111111
Q ss_pred HHHHHHHHHh--CCCceEEEEEcC
Q 000660 283 SLQKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 283 ~~~~~l~~~l--~~k~~LlVlDdv 304 (1367)
...-.+.+++ ++|.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1112223333 589999999998
No 427
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=91.85 E-value=1 Score=46.59 Aligned_cols=20 Identities=35% Similarity=0.267 Sum_probs=18.2
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 000660 217 VIPIIGMGGLGKTTLAQLVY 236 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~ 236 (1367)
++.|.|+.|.||||+.+.+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 46799999999999999987
No 428
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.84 E-value=0.38 Score=48.23 Aligned_cols=117 Identities=19% Similarity=0.145 Sum_probs=60.4
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc--CHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF--DVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQL 292 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 292 (1367)
-.+++|+|..|.|||||++.+.... ......+++...... ...+. ...+.--. ....-+...-.+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~--qlS~G~~~r~~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP--QLSGGQRQRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEe--eCCHHHHHHHHHHHHH
Confidence 3689999999999999999998742 223444444322111 11111 11111000 0111122223345555
Q ss_pred CCCceEEEEEcCCCC-CchhhhhhccccCCC-CCCcEEEEEcCchhHHhh
Q 000660 293 SGKKFLLVLDDVWNR-NYDDWVQLRRPFEVG-APGSKIIVTTRNQEVAEI 340 (1367)
Q Consensus 293 ~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 340 (1367)
-..+=++++|..-.. +......+...+... ..+..++++|.+......
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 666789999998432 222333333333221 125678888887665544
No 429
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=1.2 Score=53.63 Aligned_cols=56 Identities=27% Similarity=0.289 Sum_probs=37.5
Q ss_pred ccCcccccchhHHHH---HHHHhcCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHcCccc
Q 000660 186 DEAKVYGRETEKKDV---VELLLRDDL---SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV 241 (1367)
Q Consensus 186 ~~~~~vGr~~~~~~l---~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 241 (1367)
.-.++-|.++.++++ ++.|..+.. -+..-++=+..+|++|.|||.||++++....+
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 345678988666655 455543310 01122456789999999999999999986554
No 430
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=91.81 E-value=0.33 Score=52.39 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=47.8
Q ss_pred CceEEEEeCCCCCcHHHHH-HHHHcCcccccccceE-EEEEeCCcc-CHHHHHHHHHHHhhhcC-----CC-CCCChH--
Q 000660 214 GFSVIPIIGMGGLGKTTLA-QLVYNDKQVQDHFDLK-AWTCVSDDF-DVKRLTKTILTSIVASQ-----NV-GDPSLN-- 282 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~il~~l~~~~-----~~-~~~~~~-- 282 (1367)
+-..++|.|..|+|||+|| +.+.+.. +-+.+ +++-+.+.. .+.++.+++.+.-.... .. +.....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3467899999999999996 6666531 22333 556665553 44555555543221110 00 111111
Q ss_pred -------HHHHHHHHHhCCCceEEEEEcC
Q 000660 283 -------SLQKELSKQLSGKKFLLVLDDV 304 (1367)
Q Consensus 283 -------~~~~~l~~~l~~k~~LlVlDdv 304 (1367)
.+.+.++. +++.+|+|+||+
T Consensus 144 ~a~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 144 LAPYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 22233333 589999999999
No 431
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.79 E-value=0.11 Score=53.97 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 000660 217 VIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 432
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.75 E-value=0.11 Score=54.67 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 000660 217 VIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 433
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=91.72 E-value=0.66 Score=53.92 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=51.1
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCC-----CCCCCh------H
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQN-----VGDPSL------N 282 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~------~ 282 (1367)
....++|+|..|+|||||++.++..... ...++...-.+...+.++.+..+..-+.... ....+. .
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 3467899999999999999999874321 1223333223345666666665554221110 011111 1
Q ss_pred HHHHHHHHHh--CCCceEEEEEcCCC
Q 000660 283 SLQKELSKQL--SGKKFLLVLDDVWN 306 (1367)
Q Consensus 283 ~~~~~l~~~l--~~k~~LlVlDdv~~ 306 (1367)
.....+.+++ +++++|+|+||+-.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHH
Confidence 1222233333 48999999999943
No 434
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.69 E-value=0.13 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.++.|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 435
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.65 E-value=0.26 Score=50.60 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=30.7
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHc
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
.+++|.+..+..+.-.... ..-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688988777777665542 24678999999999999999864
No 436
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=91.65 E-value=0.48 Score=55.04 Aligned_cols=87 Identities=18% Similarity=0.341 Sum_probs=49.1
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-cCHHHHHHHHHHHhhhcC------CCCCCChHHH--
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVKRLTKTILTSIVASQ------NVGDPSLNSL-- 284 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~------~~~~~~~~~~-- 284 (1367)
+...++|+|..|+|||||++.+.+.. +.+..+++.+... ..+.+++.+....-.... ..+....+..
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34688999999999999999998743 2344555555443 344455554432110000 0011111111
Q ss_pred ---HHHHHHHh--CCCceEEEEEcC
Q 000660 285 ---QKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 285 ---~~~l~~~l--~~k~~LlVlDdv 304 (1367)
...+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 12233343 589999999999
No 437
>PRK05922 type III secretion system ATPase; Validated
Probab=91.63 E-value=0.52 Score=54.72 Aligned_cols=86 Identities=12% Similarity=0.267 Sum_probs=47.7
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCC-ccCHHHHHHHHHHHhhhcCCC------CCCChH-----
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD-DFDVKRLTKTILTSIVASQNV------GDPSLN----- 282 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~------~~~~~~----- 282 (1367)
...++|+|..|+|||||.+.+..... .+..+.+.+.. ...+...+.+........... +.....
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 45689999999999999999987421 23333333333 233344444444332221100 111111
Q ss_pred HHHHHHHHHh--CCCceEEEEEcC
Q 000660 283 SLQKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 283 ~~~~~l~~~l--~~k~~LlVlDdv 304 (1367)
...-.+.+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1122233444 589999999999
No 438
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=91.63 E-value=0.36 Score=55.29 Aligned_cols=63 Identities=22% Similarity=0.121 Sum_probs=46.0
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHH
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 264 (1367)
.++|+++.+..+...+... +-+.+.|.+|+|||+||+.++... . -..++|.+.......++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~l--~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARAL--G---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHHh--C---CCeEEEecCCCCCHHHhcC
Confidence 3788888888887777654 347899999999999999999732 2 2345666766666665543
No 439
>PRK15453 phosphoribulokinase; Provisional
Probab=91.62 E-value=0.82 Score=49.40 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.8
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHc
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+..+|+|.|.+|+||||+|+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999885
No 440
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.59 E-value=0.2 Score=51.73 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=29.3
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVS 254 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 254 (1367)
.+++.|+|+.|+|||||++.+.. ....+|...++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeeccc
Confidence 47899999999999999999997 345567555555443
No 441
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.58 E-value=0.94 Score=53.54 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.1
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+..|++++|+.|+||||++.+++..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHH
Confidence 3579999999999999999999864
No 442
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=91.57 E-value=0.23 Score=52.63 Aligned_cols=21 Identities=29% Similarity=0.331 Sum_probs=19.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHH
Q 000660 216 SVIPIIGMGGLGKTTLAQLVY 236 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~ 236 (1367)
+++.|.|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999985
No 443
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=91.57 E-value=1.5 Score=53.05 Aligned_cols=133 Identities=11% Similarity=0.108 Sum_probs=68.3
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHH
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILT 268 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~ 268 (1367)
.++|+...++++.+.+..- ...... +.|.|..|+||+++|+.++...... . ...+.+++..-.+ ..+..
T Consensus 140 ~lig~s~~~~~l~~~i~~~---a~~~~~-vli~Ge~GtGK~~lA~~ih~~s~~~-~-~~~v~v~c~~~~~--~~~~~--- 208 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKI---APSDIT-VLLLGESGTGKEVLARALHQLSDRK-D-KRFVAINCAAIPE--NLLES--- 208 (445)
T ss_pred ceeecCHHHHHHHHHHHHH---hCCCCC-EEEECCCCcCHHHHHHHHHHhCCcC-C-CCeEEEECCCCCh--HHHHH---
Confidence 4788888888777766532 112334 4599999999999999998642211 1 1223455544321 22221
Q ss_pred HhhhcCCCCCC-ChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCC-----------CCcEEEEEcCch
Q 000660 269 SIVASQNVGDP-SLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGA-----------PGSKIIVTTRNQ 335 (1367)
Q Consensus 269 ~l~~~~~~~~~-~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 335 (1367)
.+.+....... ........+. +...=.|+||++..-.......+...+..+. ...|||+||...
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 209 ELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred HhcCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC
Confidence 11111100000 0000000000 1233468899997766555666655553321 245888888754
No 444
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.51 E-value=1.2 Score=47.13 Aligned_cols=23 Identities=22% Similarity=-0.018 Sum_probs=20.4
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHc
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
.+++.|.|+.|.||||+.+.+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998865
No 445
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.50 E-value=1.7 Score=44.93 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCC-CchhhhhhccccCC-CCCCcEEEEEcCchhHHhhhCCCCce
Q 000660 284 LQKELSKQLSGKKFLLVLDDVWNR-NYDDWVQLRRPFEV-GAPGSKIIVTTRNQEVAEIMGTVPSY 347 (1367)
Q Consensus 284 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~ 347 (1367)
-...+.+.+--++=+.|||...+- +.+..+.+...+.. ...|+-+|+.|....+++...+..++
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344455555556779999998553 12222222221111 13477788888888888877655443
No 446
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.47 E-value=0.28 Score=60.30 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=54.2
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
..++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+.. ...+++..+|..-+ ..+...+++.++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHHH
Confidence 45899988888888777532 358899999999999999998742 23346777886653 346667777777
Q ss_pred HHhhh
Q 000660 268 TSIVA 272 (1367)
Q Consensus 268 ~~l~~ 272 (1367)
.+.+.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 65543
No 447
>PRK09099 type III secretion system ATPase; Provisional
Probab=91.46 E-value=0.43 Score=55.64 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=49.6
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCC------CCCCChHH----
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQN------VGDPSLNS---- 283 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~------~~~~~~~~---- 283 (1367)
+...++|.|..|+|||||++.+....... ..+++..-.+...+.++.+.+...-..... .+......
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 45688999999999999999998643221 234444433444555555555433211110 01111111
Q ss_pred -HHHHHHHHh--CCCceEEEEEcC
Q 000660 284 -LQKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 284 -~~~~l~~~l--~~k~~LlVlDdv 304 (1367)
..-.+.+++ +++++|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 112233333 589999999999
No 448
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.44 E-value=0.15 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999864
No 449
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=91.39 E-value=3.7 Score=44.35 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=67.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK 295 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 295 (1367)
+.+.|+|+.|+|||+-++.+++.. +...-+..+..+....+...+........ ..........+...+++.
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~---~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGAT---DGTINDLTERLMIRLRDT 165 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHccC
Confidence 478899999999999999999732 22333456666777777776666655443 345566677777777888
Q ss_pred ceEEEEEcCCCCCchhhhhhcccc
Q 000660 296 KFLLVLDDVWNRNYDDWVQLRRPF 319 (1367)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~l~~~l 319 (1367)
.-+++.|....-.....+.++...
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHH
Confidence 889999998776666666666444
No 450
>PRK15115 response regulator GlrR; Provisional
Probab=91.39 E-value=1.4 Score=53.17 Aligned_cols=46 Identities=24% Similarity=0.188 Sum_probs=32.3
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.++|+...+.++.+....-. . .-..+.|.|.+|+|||++|+.+++.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a---~-~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA---Q-SDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhc---c-CCCeEEEEcCCcchHHHHHHHHHHh
Confidence 46787777766666543321 1 1235679999999999999999874
No 451
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.37 E-value=0.15 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
++++|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57899999999999999999973
No 452
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.31 E-value=0.13 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999999874
No 453
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=91.29 E-value=0.3 Score=51.53 Aligned_cols=64 Identities=23% Similarity=0.228 Sum_probs=38.0
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHH
Q 000660 196 EKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLT 263 (1367)
Q Consensus 196 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 263 (1367)
+..++++.+... .++..+|+|.|+||+|||||...+....+-+++=-.++-|+-|..++--.++
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 455666666543 2356899999999999999999887643333333345556666666544444
No 454
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.27 E-value=0.14 Score=52.59 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 455
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.24 E-value=1.2 Score=42.89 Aligned_cols=62 Identities=16% Similarity=0.067 Sum_probs=28.6
Q ss_pred cccCCCCCccEEEecccCCccccCCCCCCccCcceEEEeccCCCCcccccCCCCCCCcEEEccC
Q 000660 1110 SGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGR 1173 (1367)
Q Consensus 1110 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~ 1173 (1367)
..|.++++|+.+.+.. .....-...+..+++|+.+.+.++ +...-...|.++++|+.+.+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 3566667777777764 233333344556666777777654 3333334455665666666644
No 456
>PF13479 AAA_24: AAA domain
Probab=91.23 E-value=0.54 Score=49.83 Aligned_cols=20 Identities=50% Similarity=0.489 Sum_probs=17.5
Q ss_pred eEEEEeCCCCCcHHHHHHHH
Q 000660 216 SVIPIIGMGGLGKTTLAQLV 235 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v 235 (1367)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 45789999999999999866
No 457
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.22 E-value=0.17 Score=52.54 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHc
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
+..+++|+|..|.||||||+.+..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 458
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.17 E-value=1.7 Score=45.88 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.9
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHc
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
..+++|.|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 459
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.16 E-value=0.32 Score=52.95 Aligned_cols=55 Identities=24% Similarity=0.281 Sum_probs=39.4
Q ss_pred cCcccccchhHH---HHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCccccccc
Q 000660 187 EAKVYGRETEKK---DVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF 245 (1367)
Q Consensus 187 ~~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 245 (1367)
...+||..+..+ -+++++.+.. -..+.|.|+|++|.|||+||-.+.+..--.-.|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk----~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGK----MAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCc----ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 456899765544 3666665542 245889999999999999999999854434455
No 460
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.16 E-value=0.13 Score=54.13 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHc
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999983
No 461
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.12 E-value=0.19 Score=48.57 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.9
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHc
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988776
No 462
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.07 E-value=0.73 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHc
Q 000660 217 VIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999886
No 463
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.07 E-value=1.2 Score=46.52 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
-.+++|.|..|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 464
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.05 E-value=0.17 Score=49.42 Aligned_cols=20 Identities=45% Similarity=0.748 Sum_probs=18.5
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 000660 217 VIPIIGMGGLGKTTLAQLVY 236 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~ 236 (1367)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999887
No 465
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.04 E-value=0.44 Score=58.89 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=48.3
Q ss_pred CcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHH
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.+++|.++.++.+...+... +-+.++|++|+||||+|+.+.+... ...|...+++.- ...+...+++.+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~n-~~~~~~~~~~~v~ 87 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYPN-PEDPNMPRIVEVP 87 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEeC-CCCCchHHHHHHH
Confidence 46899998888877777532 2455999999999999999997321 223333343322 2234455566666
Q ss_pred HHhhh
Q 000660 268 TSIVA 272 (1367)
Q Consensus 268 ~~l~~ 272 (1367)
.+++.
T Consensus 88 ~~~g~ 92 (608)
T TIGR00764 88 AGEGR 92 (608)
T ss_pred Hhhch
Confidence 65543
No 466
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=91.02 E-value=0.77 Score=53.55 Aligned_cols=86 Identities=19% Similarity=0.279 Sum_probs=47.1
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc-cCHHHHHHHHHHHhhhcCC------CCCCChHH----
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD-FDVKRLTKTILTSIVASQN------VGDPSLNS---- 283 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~------~~~~~~~~---- 283 (1367)
...++|+|..|+|||||++.+..... .+.++...+... .+..++...+...-..... .+......
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999986321 233333333332 2344444444433211110 01111111
Q ss_pred -HHHHHHHHh--CCCceEEEEEcC
Q 000660 284 -LQKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 284 -~~~~l~~~l--~~k~~LlVlDdv 304 (1367)
....+.+++ +++++|+++||+
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecch
Confidence 112233333 589999999999
No 467
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=2.4 Score=51.44 Aligned_cols=175 Identities=18% Similarity=0.181 Sum_probs=87.4
Q ss_pred ccccchhHHHHHHHHhcCCCCC---CCCceEEEEeCCCCCcHHHHHHHHHcCccccccc---ceEEEEEeCCccCHHHHH
Q 000660 190 VYGRETEKKDVVELLLRDDLSN---DGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF---DLKAWTCVSDDFDVKRLT 263 (1367)
Q Consensus 190 ~vGr~~~~~~l~~~L~~~~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~~~ 263 (1367)
..+++..+-.+.+.+...-..+ .....++.++|.+|+||||+++.|+.. ..-|+ +|.-.++-+...+.
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~--lg~h~~evdc~el~~~s~~~~e---- 476 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASE--LGLHLLEVDCYELVAESASHTE---- 476 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHH--hCCceEeccHHHHhhcccchhH----
Confidence 4566777777777776443211 124567889999999999999999973 33332 21111111111111
Q ss_pred HHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCC-----CCchh---hhhhc---c--ccCCCCCCcEEEE
Q 000660 264 KTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWN-----RNYDD---WVQLR---R--PFEVGAPGSKIIV 330 (1367)
Q Consensus 264 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-----~~~~~---~~~l~---~--~l~~~~~gs~ilv 330 (1367)
-.++....+.-+-....|.+-++.- +..++ ...+. . .+....++.-++.
T Consensus 477 ------------------tkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~ 538 (953)
T KOG0736|consen 477 ------------------TKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVA 538 (953)
T ss_pred ------------------HHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEE
Confidence 1112122222222344444444311 00000 00011 1 1111233444455
Q ss_pred EcCc-hhHHhhhCC--CCceeCCCCChHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChH
Q 000660 331 TTRN-QEVAEIMGT--VPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPL 388 (1367)
Q Consensus 331 TtR~-~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PL 388 (1367)
||.+ +.+...+.. .+.+.++.+++++-.++|+.+.-...-.-....++.+++|.|.-.
T Consensus 539 t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 539 TTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSF 599 (953)
T ss_pred eccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCH
Confidence 5443 444333332 256889999999999999988744222222334567777776543
No 468
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.99 E-value=0.9 Score=47.46 Aligned_cols=41 Identities=27% Similarity=0.282 Sum_probs=27.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCccccccc--------ceEEEEEeCCc
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--------DLKAWTCVSDD 256 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~s~~ 256 (1367)
.+..|.|++|+||||++..+.........| ..++|+.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 578899999999999999987643222222 35677776655
No 469
>PRK03846 adenylylsulfate kinase; Provisional
Probab=90.99 E-value=0.2 Score=52.44 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.9
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
.+..+|.|+|++|+||||+|+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999873
No 470
>PRK06936 type III secretion system ATPase; Provisional
Probab=90.98 E-value=0.51 Score=54.75 Aligned_cols=87 Identities=20% Similarity=0.326 Sum_probs=50.6
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHHhhhcCC-----C-CCCChHH---
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVKRLTKTILTSIVASQN-----V-GDPSLNS--- 283 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~-----~-~~~~~~~--- 283 (1367)
+...++|.|..|+|||||.+.+++... -+.++++-+.+.. .+.++....+..-+.... . +......
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 346889999999999999999997432 2456777666553 344444443332111110 0 1111111
Q ss_pred --HHHHHHHHh--CCCceEEEEEcC
Q 000660 284 --LQKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 284 --~~~~l~~~l--~~k~~LlVlDdv 304 (1367)
....+.+++ ++|++|+++||+
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 112233333 589999999999
No 471
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.97 E-value=0.15 Score=50.59 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999863
No 472
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=90.97 E-value=0.64 Score=54.51 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=47.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcC------CCCCCChH-----
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQ------NVGDPSLN----- 282 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~------~~~~~~~~----- 282 (1367)
+..+++|+|..|+|||||++.+...... -...+++.--+..++.++..+.+..-.... ..+.....
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998874322 123444433333345544433222111110 00111111
Q ss_pred HHHHHHHHHh--CCCceEEEEEcC
Q 000660 283 SLQKELSKQL--SGKKFLLVLDDV 304 (1367)
Q Consensus 283 ~~~~~l~~~l--~~k~~LlVlDdv 304 (1367)
.....+.+++ +++++|+++||+
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dsl 257 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSV 257 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCh
Confidence 1122233333 589999999998
No 473
>CHL00206 ycf2 Ycf2; Provisional
Probab=90.84 E-value=1.9 Score=58.20 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=22.9
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcc
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQ 240 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 240 (1367)
..+=|.++|++|+|||.||++++.+..
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 356688999999999999999998643
No 474
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=90.83 E-value=0.44 Score=55.49 Aligned_cols=90 Identities=14% Similarity=0.262 Sum_probs=54.3
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCcc-CHHHHHHHHHHHhhhcC------CCCCCChH----
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDF-DVKRLTKTILTSIVASQ------NVGDPSLN---- 282 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~il~~l~~~~------~~~~~~~~---- 282 (1367)
+...++|.|.+|+|||+|+.++..... +.+-+.++++-+.... .+.++.+++...-.... ..+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 346789999999999999999876532 2334678888876654 34455555544211111 00111111
Q ss_pred -HHHHHHHHHh---CCCceEEEEEcC
Q 000660 283 -SLQKELSKQL---SGKKFLLVLDDV 304 (1367)
Q Consensus 283 -~~~~~l~~~l---~~k~~LlVlDdv 304 (1367)
...-.+.+++ +++++|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 1222344554 468999999999
No 475
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.83 E-value=0.12 Score=31.65 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=9.3
Q ss_pred cceEEEeccCCCCcccccCC
Q 000660 1142 LIKFNISWCKGLEALPKGLH 1161 (1367)
Q Consensus 1142 L~~L~ls~n~~~~~~p~~~~ 1161 (1367)
|++|++++|.+. .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555444 4444443
No 476
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.80 E-value=0.36 Score=48.06 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=22.3
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCc
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDK 239 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (1367)
..++.|.|+.|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999853
No 477
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.80 E-value=0.24 Score=44.97 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=20.0
Q ss_pred ceEEEEeCCCCCcHHHHHHHHH
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVY 236 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~ 236 (1367)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4688999999999999999976
No 478
>PF13245 AAA_19: Part of AAA domain
Probab=90.80 E-value=0.36 Score=41.05 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=16.5
Q ss_pred eEEEEeCCCCCcHHH-HHHHHHc
Q 000660 216 SVIPIIGMGGLGKTT-LAQLVYN 237 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTt-La~~v~~ 237 (1367)
+++.|.|++|.|||+ +++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 677889999999995 4444443
No 479
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=90.79 E-value=0.18 Score=48.95 Aligned_cols=39 Identities=21% Similarity=0.339 Sum_probs=26.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCC
Q 000660 216 SVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 255 (1367)
Q Consensus 216 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 255 (1367)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999853 224455555555544
No 480
>PRK13947 shikimate kinase; Provisional
Probab=90.78 E-value=0.17 Score=51.75 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHcC
Q 000660 217 VIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 481
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.76 E-value=1.3 Score=47.81 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=29.5
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCC
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSD 255 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 255 (1367)
....++.|.|.+|+||||+|.++.... .+ .-..++|++...
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~ 58 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEE 58 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccC
Confidence 456899999999999999999876432 11 234577887643
No 482
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.75 E-value=0.2 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
..+|+|+|+.|+||||||+.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999874
No 483
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=90.71 E-value=0.76 Score=58.62 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=85.3
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcc--------------cccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQ--------------VQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDP 279 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~--------------~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~ 279 (1367)
..+++.|.|+.+.||||+.+.+.-..- .-..|+ .++..+....++..-...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~~---------- 394 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSGH---------- 394 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHHH----------
Confidence 357889999999999999998853210 011122 2333333332222111111110
Q ss_pred ChHHHHHHHHHHhCCCceEEEEEcCCCCC-chhhhhhc----cccCCCCCCcEEEEEcCchhHHhhhCCCCceeCCCCC-
Q 000660 280 SLNSLQKELSKQLSGKKFLLVLDDVWNRN-YDDWVQLR----RPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLS- 353 (1367)
Q Consensus 280 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~----~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~- 353 (1367)
.......+. .+ ..+-|+++|...... +.+-..+. ..+. ..|+.+|+||...+++........+.-..+.
T Consensus 395 -m~~~~~Il~-~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~ 469 (782)
T PRK00409 395 -MTNIVRILE-KA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEF 469 (782)
T ss_pred -HHHHHHHHH-hC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEE
Confidence 111122222 22 477899999986542 22222232 2222 3478999999998877654332211110010
Q ss_pred hHHHHHHHHhhhcCCcchHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHh
Q 000660 354 DNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLC 411 (1367)
Q Consensus 354 ~~~~~~lf~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~ 411 (1367)
+++... +......+.+ -..-|-+|++++ |+|-.+..-|..+-.. +....+.++.
T Consensus 470 d~~~l~-~~Ykl~~G~~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 523 (782)
T PRK00409 470 DEETLR-PTYRLLIGIP-GKSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIA 523 (782)
T ss_pred ecCcCc-EEEEEeeCCC-CCcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHH
Confidence 011100 0000000111 234566677776 7888888777766544 2334444443
No 484
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=2.8 Score=50.30 Aligned_cols=156 Identities=18% Similarity=0.161 Sum_probs=80.7
Q ss_pred cccccchhHHHHHHHHhcCCC-------CCCCCceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHH
Q 000660 189 KVYGRETEKKDVVELLLRDDL-------SNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKR 261 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 261 (1367)
++-|..+.++-+.+.+..... ..-....-|.++|++|.|||-||.+++....+ -+++|-..
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisvKGP----- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISVKGP----- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEecCH-----
Confidence 455666666666665543210 00012344789999999999999999874321 23455432
Q ss_pred HHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCc-----------hhhhhhccccCC--CCCCcEE
Q 000660 262 LTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNY-----------DDWVQLRRPFEV--GAPGSKI 328 (1367)
Q Consensus 262 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~i 328 (1367)
+++....+ .+.+.+.+...+.-.-|+|.+.+|...+..+ ....++...+.. +-.|--|
T Consensus 736 ---ElL~KyIG------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 736 ---ELLSKYIG------ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred ---HHHHHHhc------ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 12222211 2233444444444457999999999854211 123344444432 2345556
Q ss_pred EE-EcCchhHHhhh-CC---CCceeCCCCChHHHHHHHHhhh
Q 000660 329 IV-TTRNQEVAEIM-GT---VPSYQLKKLSDNDCLAVFAQHS 365 (1367)
Q Consensus 329 lv-TtR~~~v~~~~-~~---~~~~~l~~L~~~~~~~lf~~~~ 365 (1367)
+. |||.+-+...+ +. .+.+.-+.-++.+-.++|...+
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 65 55554332221 21 2233334445556666666554
No 485
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.68 E-value=0.21 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
..+|.|.|.+|+||||+|+.++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999874
No 486
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.65 E-value=0.7 Score=49.46 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=41.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCc--cCHHHHHHHHHHHhhhcC---C--CCCCChHHHHHHHH
Q 000660 217 VIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDD--FDVKRLTKTILTSIVASQ---N--VGDPSLNSLQKELS 289 (1367)
Q Consensus 217 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~il~~l~~~~---~--~~~~~~~~~~~~l~ 289 (1367)
+|+|.|..|+||||+|+.+....+-.+ ..++.++...- ++....-..+........ . .+..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998876321111 11233332221 122222222222221111 1 24556777888887
Q ss_pred HHhCCCc
Q 000660 290 KQLSGKK 296 (1367)
Q Consensus 290 ~~l~~k~ 296 (1367)
...+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7766554
No 487
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=90.65 E-value=0.4 Score=47.32 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=29.7
Q ss_pred hhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCc
Q 000660 195 TEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 239 (1367)
Q Consensus 195 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 239 (1367)
+.+++|.+++.. +++.++|..|+|||||...+..+.
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 457788888832 688999999999999999999753
No 488
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=90.62 E-value=9.3 Score=42.20 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=45.8
Q ss_pred CCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCch-hHHhhhC-CCCceeCCCCChHHHHHHHHh
Q 000660 294 GKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQ-EVAEIMG-TVPSYQLKKLSDNDCLAVFAQ 363 (1367)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~ 363 (1367)
+++=++|+|++...+...+..+...+.....++.+|.+|.+. .+...+. -...+.+.. +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 556689999998887778888888887656667666666553 3433332 234566766 66666666653
No 489
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.57 E-value=1 Score=48.38 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=31.1
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHH
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTI 266 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 266 (1367)
...++.|.|.+|+||||+|.+++... .+.. ..+++++. ..+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeC--CCCHHHHHHHH
Confidence 45699999999999999986665432 1222 33566653 33455555555
No 490
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=90.54 E-value=0.22 Score=47.22 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEeCCCCCcHHHHHHHHHcCc
Q 000660 218 IPIIGMGGLGKTTLAQLVYNDK 239 (1367)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~~ 239 (1367)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998654
No 491
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=90.53 E-value=0.51 Score=55.35 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=52.1
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcCccccccc--ceEEEEEeCCcc-CHHHHHHHHHHHhhhcCC------CCCCChH--
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHF--DLKAWTCVSDDF-DVKRLTKTILTSIVASQN------VGDPSLN-- 282 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~-~~~~~~~~il~~l~~~~~------~~~~~~~-- 282 (1367)
+-..++|.|..|+|||||+.++.+.....+.+ ..++++-+.+.. .+.++..++...-..... .+.....
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 34678999999999999999998754332111 145666665543 445555555433211110 0111111
Q ss_pred ---HHHHHHHHHh---CCCceEEEEEcC
Q 000660 283 ---SLQKELSKQL---SGKKFLLVLDDV 304 (1367)
Q Consensus 283 ---~~~~~l~~~l---~~k~~LlVlDdv 304 (1367)
.....+.+++ +++++|+++||+
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCh
Confidence 1122244444 478999999999
No 492
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=90.48 E-value=2.1 Score=43.11 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEeCCCCCcHHHHHHHHHcC
Q 000660 218 IPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~ 238 (1367)
|.|+|.+|+|||||+..+.+.
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 493
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.47 E-value=0.48 Score=54.40 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=61.7
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcCcccccccceEEEEEeCCccCHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhCC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSG 294 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 294 (1367)
...+.|.|+.|.||||+++.+.+. +..+...+++.- .+.. +...... ..+..... .........+.++..++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~ti-Edp~--E~~~~~~-~~~i~q~e-vg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIITI-EDPI--EYVHRNK-RSLINQRE-VGLDTLSFANALRAALRE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEEE-cCCh--hhhccCc-cceEEccc-cCCCCcCHHHHHHHhhcc
Confidence 368999999999999999998763 333344455432 2221 1110000 00000001 111123456667788888
Q ss_pred CceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHH
Q 000660 295 KKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVA 338 (1367)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 338 (1367)
.+=.|++|.+.+. +.+...... ...|-.|+.|.....+.
T Consensus 195 ~pd~i~vgEird~--~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 195 DPDVILIGEMRDL--ETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCCEEEEeCCCCH--HHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 8999999999543 444432222 23455677777665444
No 494
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=90.47 E-value=0.64 Score=58.82 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=70.0
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcc-cccccceEEEEEeCCccCHHHHHHHHH
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VQDHFDLKAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~il 267 (1367)
.++|....++++.+....-. ... .-|.|+|..|+||+++|+.+++... -...| +.|++..-.. ..+..+++
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a---~~~-~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pf---v~vnc~~~~~-~~~~~elf 397 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAA---KSS-FPVLLCGEEGVGKALLAQAIHNESERAAGPY---IAVNCQLYPD-EALAEEFL 397 (638)
T ss_pred ceEECCHHHHHHHHHHHHHh---CcC-CCEEEECCCCcCHHHHHHHHHHhCCccCCCe---EEEECCCCCh-HHHHHHhc
Confidence 47898888888877765431 122 3367999999999999999987432 12223 3455544321 22222332
Q ss_pred HHhhhcCCCCCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCC-----------CCcEEEEEcCc
Q 000660 268 TSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGA-----------PGSKIIVTTRN 334 (1367)
Q Consensus 268 ~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 334 (1367)
........ .... ..+. ....=.|+||++.+-.......+...+..+. ...|||.||..
T Consensus 398 g~~~~~~~--~~~~----g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDSE--NGRL----SKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCcc--CCCC----Ccee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 21110000 0000 0000 1123468999997766666666666554321 13467777664
No 495
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=90.46 E-value=0.62 Score=54.20 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=22.0
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+...++|+|..|+|||||++.+...
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc
Confidence 4578999999999999999998863
No 496
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.42 E-value=0.19 Score=48.81 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.3
Q ss_pred EEEeCCCCCcHHHHHHHHHcC
Q 000660 218 IPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 218 i~I~G~gGiGKTtLa~~v~~~ 238 (1367)
|+|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999874
No 497
>PLN02348 phosphoribulokinase
Probab=90.39 E-value=0.32 Score=55.12 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHc
Q 000660 213 GGFSVIPIIGMGGLGKTTLAQLVYN 237 (1367)
Q Consensus 213 ~~~~vi~I~G~gGiGKTtLa~~v~~ 237 (1367)
.+..+|+|.|.+|+||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 498
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.38 E-value=0.27 Score=50.62 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+.++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4588999999999999999999874
No 499
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=90.38 E-value=1.6 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 215 FSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 215 ~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
..+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999853
No 500
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.37 E-value=1.3 Score=49.88 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.4
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHcC
Q 000660 214 GFSVIPIIGMGGLGKTTLAQLVYND 238 (1367)
Q Consensus 214 ~~~vi~I~G~gGiGKTtLa~~v~~~ 238 (1367)
+..++.++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999864
Done!