Query 000660
Match_columns 1367
No_of_seqs 566 out of 6128
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 17:29:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000660.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_431-435//hhsearch_pdb/000660hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 409.6 26.0 318 188-525 128-473 (549)
2 3rgz_A Protein brassinosteroid 1.0 1 1 402.4 27.1 625 594-1328 75-765 (768)
3 3rgz_A Protein brassinosteroid 1.0 1 1 375.4 25.7 603 596-1306 50-716 (768)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 369.7 24.8 313 185-524 121-453 (1249)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 342.5 40.0 433 860-1321 188-636 (680)
6 1vt4_I APAF-1 related killer D 1.0 1 1 335.0 23.6 287 189-517 129-437 (1221)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 314.8 36.7 208 1068-1288 405-626 (680)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 310.3 31.3 314 901-1320 255-572 (606)
9 1z6t_A APAF-1, apoptotic prote 1.0 1 1 310.3 26.5 306 187-521 123-450 (591)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 305.6 32.5 290 901-1306 262-557 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=409.60 Aligned_cols=318 Identities=19% Similarity=0.249 Sum_probs=262.7
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHC--CCCCCCCCCEEEEEEECCCC--CHHHHH
Q ss_conf 83134400599999998229989999936998867798828999999973--72432466629999918966--999999
Q 000660 188 AKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYN--DKQVQDHFDLKAWTCVSDDF--DVKRLT 263 (1367)
Q Consensus 188 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gG~GKTtLa~~v~~--~~~~~~~f~~~~wv~~s~~~--~~~~~~ 263 (1367)
+..|||+.++++|.++|... .+...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.. +...++
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 204 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLF 204 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCC---CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 76078417999999987251---578962899986999988999999998406987466995799997898787999999
Q ss_pred HHHHHHHHHCCC------CCCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCHH
Q ss_conf 999999430389------99999689999999991798-55999983787890115441155577999938999727525
Q 000660 264 KTILTSIVASQN------VGDPSLNSLQKELSKQLSGK-KFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQE 336 (1367)
Q Consensus 264 ~~il~~l~~~~~------~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 336 (1367)
..|+.+++.... ....+.+.+...+++.++++ |+||||||||+.....|.. .+||+||||||+..
T Consensus 205 ~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 205 TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVE 276 (549)
T ss_dssp HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGG
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCC--------CCCCEEEEECCCHH
T ss_conf 9999998537553455553314699999999999768984899997999714415432--------69988999749779
Q ss_pred HHHHHC-CCCCEECCCCCHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCH
Q ss_conf 886517-978051789996779999986212993--04899999999833997699999985520799999999998200
Q 000660 337 VAEIMG-TVPSYQLKKLSDNDCLAVFAQHSLGSH--KLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSK 413 (1367)
Q Consensus 337 v~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~l~~~ 413 (1367)
++..++ ....+++++|+.++||+||.+++++.. +...+++.+|+++|+|+||||+++|+.++.+ . .+|...+.+.
T Consensus 277 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 277 ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-H-HHHHHHHHHH
T ss_conf 9997088973898999898999999998744899855689999999999599839999999984434-4-8999875787
Q ss_pred HHHCCCCCCCCHHHHHHHHHCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCCCCCCCHH
Q ss_conf 1000135457047999845079846777852-----------51039888523799999999985--9864789999968
Q 000660 414 IWELSEKRCGIIPALAVSYYYLPPTLKQCFA-----------YCSLFPKDYEFEEEEIILLWCAS--GFLDHKEDENPSE 480 (1367)
Q Consensus 414 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~-----------~~s~fp~~~~i~~~~l~~~w~a~--g~~~~~~~~~~~~ 480 (1367)
.+.. ....+..++.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.........+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred HHCC--CHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHH
T ss_conf 6136--477789897516202267999997526522336743235608997666----5331101355002677899999
Q ss_pred HHHHHHHHHHHHCCCCCCCCC-CCCCEEEHHHHHHHHHHHHCCCEE
Q ss_conf 999999999985686321268-998315137999999984026228
Q 000660 481 DLGRDFFKELRSRSFLQQSAT-DASLFVMHDLINDLARWAAGETYF 525 (1367)
Q Consensus 481 ~~~~~~l~~L~~~~ll~~~~~-~~~~~~~H~lv~~~~~~~~~~~~~ 525 (1367)
++++ |+++|+++||++.... +..+|+|||+||+||+.++.++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 9999-99999875883671479804999676999999999889899
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=402.37 Aligned_cols=625 Identities=17% Similarity=0.101 Sum_probs=335.4
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCC-CCCC--CCCCCCCCCCC
Q ss_conf 89855567708987665685456813038999103458745311899999446597135898-7896--64778888600
Q 000660 594 KPQRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGM-KFPT--WLGDSSFSNLV 670 (1367)
Q Consensus 594 ~l~~Lr~L~L~~~~i~~lp~~i~~L~l~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~lp~--~~~~~~l~~L~ 670 (1367)
.+++|++++++.+.+..+|+.++++. +|++|+++++... .+|. .++. +++|+
T Consensus 75 ~L~~L~~l~~~~~~~~~l~~~~~~l~-----------------------~L~~L~Ls~n~l~~~~~~~~~l~~--l~~L~ 129 (768)
T 3rgz_A 75 SLTGLESLFLSNSHINGSVSGFKCSA-----------------------SLTSLDLSRNSLSGPVTTLTSLGS--CSGLK 129 (768)
T ss_dssp TCTTCCEEECTTSCEEECCCCCCCCT-----------------------TCCEEECCSSEEEEEGGGGGGGGG--CTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHCCCC-----------------------CCCEEECCCCCCCCCCCCHHHHHC--CCCCC
T ss_conf 16802246786888678703324578-----------------------899898989857870789678727--88999
Q ss_pred EEEEECCCCCCCCC-C-CCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99873698999999-9-998888881364378783150954458888887665430013363111122357888888776
Q 000660 671 TLKFKNCDMCTALP-S-VGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVEGF 748 (1367)
Q Consensus 671 ~L~L~~~~~~~~lp-~-l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l 748 (1367)
+|+|++|.....+| . +..+++|++|++++|. +.......+. ....+++|+.|.+.++.- ... .....+
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~--~~~~l~~L~~L~Ls~n~l-~~~------~~~~~l 199 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWV--LSDGCGELKHLAISGNKI-SGD------VDVSRC 199 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHH--HTTCCTTCCEEECCSSEE-ESC------CBCTTC
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCCHHHH--HHCCCCCCCEEECCCCCC-CCC------CCCCCC
T ss_conf 898968826774797785638899989897983-5885871556--643589889898978803-465------784547
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCCCCCEEEEECCCCC---CCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 5432001223432226789--88986548999233581---212678987418998588762020334778975420012
Q 000660 749 PKLRELHILKCSKLKGTFP--EHLPALEMLVIEGCEEL---LVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCR 823 (1367)
Q Consensus 749 ~~L~~L~l~~c~~l~~~~p--~~l~~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~ 823 (1367)
++|+.|++.+|. +.+.+| ..+++|+.|++++|... ...+..+++|+.|++++|........ ..+.++..+
T Consensus 200 ~~L~~L~Ls~n~-l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L 274 (768)
T 3rgz_A 200 VNLEFLDVSSNN-FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYL 274 (768)
T ss_dssp TTCCEEECCSSC-CCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC----CCCTTCCEE
T ss_pred CCCCEEECCCCC-CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC----CCCCCCCEE
T ss_conf 868989892882-788771112699999897948858781657774488889898988866571672----436878989
Q ss_pred CCCCCCHHCCCCCHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 4566310049983122345-777511222110002456610125776568834889830103677777776664304663
Q 000660 824 DASNQVFLVGPLKPQLQKL-EELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRL 902 (1367)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~l-~~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L 902 (1367)
++..+. +.+.+|..+... ..|+.+.+..+.+....+..+..++ +|
T Consensus 275 ~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~---------------------------------~L 320 (768)
T 3rgz_A 275 SLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS---------------------------------LL 320 (768)
T ss_dssp ECCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT---------------------------------TC
T ss_pred ECCCCC-CCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCC---------------------------------CC
T ss_conf 791785-57725888884468688998968967784236775587---------------------------------76
Q ss_pred CEEEECCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCC-CCCCC-CCCEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 46985179763357856-68878754899824899532488-77746-66478723587446574121169999812899
Q 000660 903 EYIELRDCQDLVKLPQS-SLSLSSLREIEIYQCSSLVSFPE-VALPS-KLKTIHISSCDALKLLPEAWMCDTNSSLEILE 979 (1367)
Q Consensus 903 ~~L~L~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ 979 (1367)
+.|++++|...+.+|.. +..+++|++|++++|.....+|. +..++ +|+.|++++|.+.+.++..+....+++|+.|+
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred CEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEE
T ss_conf 67789788525737978872488887884847843762309898632277199862787478767666533247761898
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 93078831123667756455466203788765522224346678765455657866178606999642355788402210
Q 000660 980 ILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLE 1059 (1367)
Q Consensus 980 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~l~ 1059 (1367)
+.+|.... .+|.. +.++++|+.+++++|.+.+..+.. ....++|+.|++.+|.-... .|..+.
T Consensus 401 L~~n~l~~-----~~p~~-----l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~------~p~~~~ 463 (768)
T 3rgz_A 401 LQNNGFTG-----KIPPT-----LSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGE------IPQELM 463 (768)
T ss_dssp CCSSEEEE-----ECCGG-----GGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSC------CCGGGG
T ss_pred CCCCCCCC-----CCCHH-----HHCCCCCCEEECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCCCC------CCHHHC
T ss_conf 97784654-----24877-----756898798989588466854677-74499889898978815471------897882
Q ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 01248998887605882577211478620368865356612457745475334788976588841468964248998886
Q 000660 1060 SLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPC 1139 (1367)
Q Consensus 1060 ~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 1139 (1367)
. .++|+.|++.++.....+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+
T Consensus 464 ~------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 464 Y------VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp G------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred C------CCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCC
T ss_conf 8------7773299901995137588788169989989753995189687688568999989897894337488777088
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCC----------------------------------------------
Q ss_conf 6745599711578875664578889976788158----------------------------------------------
Q 000660 1140 AKLIKFNISWCKGLEALPKGLHNLTSLQELTIGR---------------------------------------------- 1173 (1367)
Q Consensus 1140 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~---------------------------------------------- 1173 (1367)
++|+.|++++|.+.+.+|..+.....+..+.+..
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 98998989888468827957860421223201345421111344432222332221001355632320023211001133
Q ss_pred CCCCC-CCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCC-CCCCHHHHHCCCCCCCCCCCE
Q ss_conf 89988-8768899998427882488332246654066678778635888457788577-673000110043898998775
Q 000660 1174 GVELP-SLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMV-SIPLEDKRLGAALPLLASLTS 1251 (1367)
Q Consensus 1174 n~~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~-~l~~~~~~l~~~~~~l~~L~~ 1251 (1367)
+.... ....+..+++|+.|++++|...... +..+..+++|+.|++++| .+. .+|. .+..+++|+.
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i----p~~l~~l~~L~~L~Ls~N--~l~g~ip~-------~l~~L~~L~~ 684 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI----PKEIGSMPYLFILNLGHN--DISGSIPD-------EVGDLRGLNI 684 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCC----CGGGGGCTTCCEEECCSS--CCCSCCCG-------GGGGCTTCCE
T ss_pred CEECCCCCHHHHCCCCCCEEECCCCCCCCCC----CHHHHCCCCCCEEECCCC--CCCCCCCH-------HHHCCCCCCE
T ss_conf 1004627433403356657978588015558----778841415787848688--03887896-------7847778998
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCHHHH----HHHHHCCCCCCCCCCCCCE
Q ss_conf 872477777444544456998767942289987678988885544534125891069----9882129997653248775
Q 000660 1252 LEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPEKGLPSSLLKLSIYDCPLIE----EKCREDGGQYWALLTHLPY 1327 (1367)
Q Consensus 1252 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~sL~~L~i~~cp~l~----~~~~~~~~~~~~~i~~~~~ 1327 (1367)
|++++|...+.+|..+..+++|+.|++++|+..+.+|..+.+.++....+.+||.++ ..|....+++|+++.|++.
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~ 764 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHH 764 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC------------
T ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98978802386886775788789787968815560899601024897775698321088776788876688898887656
Q ss_pred E
Q ss_conf 9
Q 000660 1328 V 1328 (1367)
Q Consensus 1328 ~ 1328 (1367)
+
T Consensus 765 ~ 765 (768)
T 3rgz_A 765 H 765 (768)
T ss_dssp -
T ss_pred C
T ss_conf 6
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=375.44 Aligned_cols=603 Identities=18% Similarity=0.121 Sum_probs=299.8
Q ss_pred CCCCEEECCCCCCCC----CCCCCCCCEECCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 855567708987665----6854568130389991034587453118999994465971358987896647788886009
Q 000660 596 QRLRAFSLRGYHIFE----LPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNLVT 671 (1367)
Q Consensus 596 ~~Lr~L~L~~~~i~~----lp~~i~~L~l~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~ 671 (1367)
.+++.|+|+++.+.. +|+.+++|. +|+.++++.+....+|..++. +++|++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~-----------------------~L~~l~~~~~~~~~l~~~~~~--l~~L~~ 104 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLT-----------------------GLESLFLSNSHINGSVSGFKC--SASLTS 104 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCT-----------------------TCCEEECTTSCEEECCCCCCC--CTTCCE
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCC-----------------------CCCCCCCCCCCCCCCCHHHCC--CCCCCE
T ss_conf 9278987789986775576696573168-----------------------022467868886787033245--788998
Q ss_pred EEEECCCCCCCCC---CCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC---C
Q ss_conf 9873698999999---999888888136437878315095445888888766543001336311112235788888---8
Q 000660 672 LKFKNCDMCTALP---SVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQG---V 745 (1367)
Q Consensus 672 L~L~~~~~~~~lp---~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~---~ 745 (1367)
|+|++|.....+| .++.+++|++|++++|.....++.... ..+++|+.|++..+.- .... +.. +
T Consensus 105 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-----~~l~~L~~L~Ls~n~l-~~~~----~~~~~~~ 174 (768)
T 3rgz_A 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG-----LKLNSLEVLDLSANSI-SGAN----VVGWVLS 174 (768)
T ss_dssp EECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSC-----CCCTTCSEEECCSSCC-EEET----HHHHHHT
T ss_pred EECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHH-----CCCCCCCEEECCCCCC-CCCC----CHHHHHH
T ss_conf 9898985787078967872788999898968826774797785-----6388999898979835-8858----7155664
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEECCCCC--CCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 7765432001223432226789-88986548999233581--21267898741899858876202033477897542001
Q 000660 746 EGFPKLRELHILKCSKLKGTFP-EHLPALEMLVIEGCEEL--LVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVC 822 (1367)
Q Consensus 746 ~~l~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~l--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~ 822 (1367)
..+++|+.|++.+|. +.+..+ ..+++|+.|++++|... ...+..+++|++|+++++..
T Consensus 175 ~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l------------------ 235 (768)
T 3rgz_A 175 DGCGELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL------------------ 235 (768)
T ss_dssp TCCTTCCEEECCSSE-EESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCC------------------
T ss_pred CCCCCCCEEECCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCC------------------
T ss_conf 358988989897880-3465784547868989892882788771112699999897948858------------------
Q ss_pred CCCCCCCHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 24566310049983122345777511222110002456610125776568834889830103677777776664304663
Q 000660 823 RDASNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRL 902 (1367)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L 902 (1367)
.+..+..+..+..|+.+.+..+.+....+.. .+++|++|+++++.-...++.. .....++|
T Consensus 236 ---------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~--------~~~~~~~L 296 (768)
T 3rgz_A 236 ---------SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF--------LSGACDTL 296 (768)
T ss_dssp ---------CSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCC--------SCTTCTTC
T ss_pred ---------CCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHH--------HHHHCCCC
T ss_conf ---------7816577744888898989888665716724--3687898979178557725888--------88446868
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCCCCCCCCCCCC-CCCEEE
Q ss_conf 4698517976335785668878754899824899532488--7774666478723587446574121169999-812899
Q 000660 903 EYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPE--VALPSKLKTIHISSCDALKLLPEAWMCDTNS-SLEILE 979 (1367)
Q Consensus 903 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~-~L~~L~ 979 (1367)
+.|++++|...+.+|..+..+++|+.|++++|...+.+|. +..+++|+.|++++|.+.+.+|..+ ..++ +|+.|+
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~~L~~L~ 374 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL--TNLSASLLTLD 374 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH--HHHTTTCSEEE
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHH--HHHHCCCCEEE
T ss_conf 8998968967784236775587766778978852573797887248888788484784376230989--86322771998
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 93078831123667756455466203788765522224346678765455657866178606999642355788402210
Q 000660 980 ILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLE 1059 (1367)
Q Consensus 980 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~l~ 1059 (1367)
+.++..... .+..+. ...+++|+.+++.+|.+.+..+.. ....++|+.|++++|.-.. ..|..+.
T Consensus 375 Ls~N~l~~~-----~~~~~~---~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~------~~p~~l~ 439 (768)
T 3rgz_A 375 LSSNNFSGP-----ILPNLC---QNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSG------TIPSSLG 439 (768)
T ss_dssp CCSSEEEEE-----CCTTTT---CSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEEECCSSEEES------CCCGGGG
T ss_pred CCCCCCCCC-----CCHHHH---HCCCCCCCEEECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCCC------CCCHHHH
T ss_conf 627874787-----676665---332477618989778465424877-7568987989895884668------5467774
Q ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 01248998887605882577211478620368865356612457745475334788976588841468964248998886
Q 000660 1060 SLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPC 1139 (1367)
Q Consensus 1060 ~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 1139 (1367)
. + ++|+.|.+..+.....+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+..+
T Consensus 440 ~-----l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 440 S-----L-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp G-----C-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred C-----C-CCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 4-----9-988989897881547189788287773299901995137588788169989989753995189687688568
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCEEE---------ECCCCCH---------
Q ss_conf 67455997115788756645788899767881588998887688-9999842788---------2488332---------
Q 000660 1140 AKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEED-GLPTNLHSLD---------IRGNMEI--------- 1200 (1367)
Q Consensus 1140 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~---------L~~n~~~--------- 1200 (1367)
++|+.|++++|.+.+.+|..+..+++|+.|++++|.....++.. .....+..+. +.++...
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99998989789433748877708898998989888468827957860421223201345421111344432222332221
Q ss_pred -----------H-------------HHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCC----CCCCCCCEE
Q ss_conf -----------2-------------466540666787786358884577885776730001100438----989987758
Q 000660 1201 -----------W-------------KSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAAL----PLLASLTSL 1252 (1367)
Q Consensus 1201 -----------~-------------~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~~l~~~~----~~l~~L~~L 1252 (1367)
. ......+..+..+++|+.|++++| .+.+.+ ..+++|+.|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N------------~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN------------MLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS------------CCBSCCCGGGGGCTTCCEE
T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCC------------CCCCCCCHHHHCCCCCCEE
T ss_conf 0013556323200232110011331004627433403356657978588------------0155587788414157878
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCEEECCCCHH
Q ss_conf 72477777444544456998767942289987678988-8855445341258910
Q 000660 1253 EIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPEK-GLPSSLLKLSIYDCPL 1306 (1367)
Q Consensus 1253 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~~sL~~L~i~~cp~ 1306 (1367)
++++|...+.+|..+.++++|+.|++++|...+.+|.. +.+++|+.|++++|+.
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC
T ss_conf 4868803887896784777899898978802386886775788789787968815
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=369.67 Aligned_cols=313 Identities=19% Similarity=0.290 Sum_probs=248.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC-CCCC-CEEEEEEECCCCC--HH
Q ss_conf 656831344005999999982299899999369988677988289999999737243-2466-6299999189669--99
Q 000660 185 VDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-QDHF-DLKAWTCVSDDFD--VK 260 (1367)
Q Consensus 185 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gG~GKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~--~~ 260 (1367)
.+.+.||||++++++|.++|... +...++++|+||||+||||||+++|++.+. ..+| +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCCEECCHHHHHHHHHHHHHHC----CCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHH
T ss_conf 99864125799999999998613----58877799991898888899999860756788627881799997885726799
Q ss_pred HHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHCCC--CEEEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCH
Q ss_conf 999999999430389---99999689999999991798--5599998378789011544115557799993899972752
Q 000660 261 RLTKTILTSIVASQN---VGDPSLNSLQKELSKQLSGK--KFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQ 335 (1367)
Q Consensus 261 ~~~~~il~~l~~~~~---~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 335 (1367)
..+..++..+..... ......+.+...++..+.++ |+||||||+|+. ..|..+ .+|++||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHH-------CCCCEEEEECCCH
T ss_conf 9999999986553033347887778999999999735678789999567997--788763-------6897899992778
Q ss_pred HHHHH-HCCCCCEECCC-CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCH
Q ss_conf 58865-17978051789-99677999998621299304899999999833997699999985520799999999998200
Q 000660 336 EVAEI-MGTVPSYQLKK-LSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSK 413 (1367)
Q Consensus 336 ~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~l~~~ 413 (1367)
.++.. .+....+++.+ |+.+++++||...++...+...+.+.+|+++|+|+||||+++|+.++.++ ..|...++..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l 345 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQL 345 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHH
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHHHHHHHHH
T ss_conf 99876348843798258888788999999865798134838899999984997799999999862480--5799999998
Q ss_pred HHHC----CC----CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 1000----13----545704799984507984677785251039888523799999999985986478999996899999
Q 000660 414 IWEL----SE----KRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRD 485 (1367)
Q Consensus 414 ~~~~----~~----~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~ 485 (1367)
.... .. ....+..++.+||+.||+++|.||+|||+||+++.|+.+.++.+|.++ ++.++.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~ 413 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVED 413 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC------------HHHHHH
T ss_conf 65044303465564467799999989986799999999972813799751899999885898------------889999
Q ss_pred HHHHHHHCCCCCCCCCC-CCCEEEHHHHHHHHHHHHCCCE
Q ss_conf 99999856863212689-9831513799999998402622
Q 000660 486 FFKELRSRSFLQQSATD-ASLFVMHDLINDLARWAAGETY 524 (1367)
Q Consensus 486 ~l~~L~~~~ll~~~~~~-~~~~~~H~lv~~~~~~~~~~~~ 524 (1367)
++++|+++||++....+ ..+|+||++||+|++..+.++.
T Consensus 414 ~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 414 ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 9999974463389637981189966899999874506789
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=342.51 Aligned_cols=433 Identities=16% Similarity=0.091 Sum_probs=281.1
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCC--CCEEEECCCCCC
Q ss_conf 661012577656883488983010367777777666430466346985179763357856688787--548998248995
Q 000660 860 DGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSS--LREIEIYQCSSL 937 (1367)
Q Consensus 860 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~ 937 (1367)
+..+..+++|+.+.+.++..-.... . ........+.|+.|++++|......+..+..++. |+.|++++|...
T Consensus 188 ~~~~~~l~~L~~L~l~~~~l~~~~~-~-----~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 188 PGCFHAIGRLFGLFLNNVQLGPSLT-E-----KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp TTGGGGSSEECEEECTTCCCHHHHH-H-----HHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHH-H-----HHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCC
T ss_conf 1555322344554305664680567-7-----787775315100887457743646866751467677888778788767
Q ss_pred CCCC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 3248-877746664787235874465741211699998128999307883112366775645546620378876552222
Q 000660 938 VSFP-EVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEE 1016 (1367)
Q Consensus 938 ~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~l~~ 1016 (1367)
...+ .+..+++|+.|++++|.+.+..+..+ ..+++|+.|++.++.....+....+| .+....+..+++|+.+++++
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~lp-~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLP-KIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTT--TTCTTCCEEECTTCBCCC------CC-EECTTTTTTCTTCCEEECCS
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCHHHH--CCCCCCCEEECCCHHHHCCCCCCCCC-CCCHHHCCCCCCCCEEECCC
T ss_conf 5680211674105685577885676586562--67888557736331321333335545-43865624677788887989
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCE
Q ss_conf 43466787654556578661786069996423557884022100124899888760588257721147862036886535
Q 000660 1017 GIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEI 1096 (1367)
Q Consensus 1017 n~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~l~~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 1096 (1367)
|.+.+..+ ......++|+.+++++|..-....+...+. . .-.++++.|.+..+......+..+..+++|+.
T Consensus 339 n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~----~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 339 NDIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFV----S----LAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp CCBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTG----G----GTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCCH-HHHCCCCCCCEEECCCCCHHHHHCCHHHHC----C----CCCCCCCEEECCCCCCCEECHHHHHCCCCCCE
T ss_conf 82687885-574065687289887980144323532202----4----55686766889999777677544207788888
Q ss_pred EEECCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCC--CCCCCCCCCCCCCCEEECCC
Q ss_conf 6612457745475-33478897658884146896424899888667455997115788--75664578889976788158
Q 000660 1097 IRIDFCKNLKILP-SGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGL--EALPKGLHNLTSLQELTIGR 1173 (1367)
Q Consensus 1097 L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~--~~~p~~l~~l~~L~~L~l~~ 1173 (1367)
|++++|.+.+.++ ..+.++++|+.|++++|......+..+..+++|+.|++++|... +.+|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 86778757543575532575461278448997542276455007543101101464422566776455578789998999
Q ss_pred CCCCCCCCC-CCCCCCCCEEEECCCCCHHHHHHH----HCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 899888768-899998427882488332246654----066678778635888457788577673000110043898998
Q 000660 1174 GVELPSLEE-DGLPTNLHSLDIRGNMEIWKSMIE----RGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALPLLAS 1248 (1367)
Q Consensus 1174 n~~~~~~~~-~~~~~~L~~L~L~~n~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~l~~l~~~~~~l~~~~~~l~~ 1248 (1367)
|......+. +..+++|+.|++++|......... ....+..+++|+.|++++| .+..++.. .+..+++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~------~~~~l~~ 561 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEIPVE------VFKDLFE 561 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCCCTT------TTTTCTT
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCC--CCCCCCHH------HCCCCCC
T ss_conf 987767944634553468885889973000000046774142337998888889999--78877977------7346667
Q ss_pred CCEEEECCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCC---CCCCCCEEECCCCHHHHHHHHH-CCCCCCCC
Q ss_conf 775872477777444544-4569987679422899876789888---8554453412589106998821-29997653
Q 000660 1249 LTSLEIYNFPNLERLSSS-IVDLQNLTSLYLKNCPKLKYFPEKG---LPSSLLKLSIYDCPLIEEKCRE-DGGQYWAL 1321 (1367)
Q Consensus 1249 L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~lp~~~---~~~sL~~L~i~~cp~l~~~~~~-~~~~~~~~ 1321 (1367)
|+.|++++| .+..+|.. +..+++|+.|++++| .++.++... .+++|+.+++.+||. .+.|.. .+...|..
T Consensus 562 L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~-~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 562 LKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPF-DCTCESIAWFVNWIN 636 (680)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCC-CBCCCCCSSEECCSS
T ss_pred CCEEECCCC-CCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCCEEECCCCCC-CCCCCCHHHHHHHHH
T ss_conf 522389999-777679768378988888989999-687059668301146657798318970-257766899999987
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=334.95 Aligned_cols=287 Identities=18% Similarity=0.226 Sum_probs=229.3
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCE-EEEEEECCCCCHHHHHHHHH
Q ss_conf 31344005999999982299899999369988677988289999999737243246662-99999189669999999999
Q 000660 189 KVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDL-KAWTCVSDDFDVKRLTKTIL 267 (1367)
Q Consensus 189 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gG~GKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~il 267 (1367)
..|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 77892899999999974358-----9718999769996679999999971498874899389998289999999999999
Q ss_pred HHHHHCCC---CCC-------CCHHHHHHHHHHHH---CCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEECCC
Q ss_conf 99430389---999-------99689999999991---798559999837878901154411555779999389997275
Q 000660 268 TSIVASQN---VGD-------PSLNSLQKELSKQL---SGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRN 334 (1367)
Q Consensus 268 ~~l~~~~~---~~~-------~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 334 (1367)
..+..... ... .+.+.+...++..+ .++|+||||||||+. ..|+.+. +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f~-------pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFN-------LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHHH-------SSCCEEEECSC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHHC-------CCEEEEEECCC
T ss_conf 99862272102200134679999999999999999850478879987186818--9998647-------98299994437
Q ss_pred HHHHHHHCCCCCEECC------CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC-CHHHHH
Q ss_conf 2588651797805178------999677999998621299304899999999833997699999985520799-999999
Q 000660 335 QEVAEIMGTVPSYQLK------KLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKH-DRREWE 407 (1367)
Q Consensus 335 ~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~-~~~~w~ 407 (1367)
+.++..+.....++++ +|+.+|||+||.+..... ..++..++ |+|+||||+++|+.|+.+. ..++|.
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~---~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC---TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC---HHHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 3799866897089946865568969999999999974998---89999999---69899999999999848899799986
Q ss_pred HHHHCHHHHCCCCCCCCHHHHHHHHHCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99820010001354570479998450798467-77852510398885237999999999859864789999968999999
Q 000660 408 RVLCSKIWELSEKRCGIIPALAVSYYYLPPTL-KQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDF 486 (1367)
Q Consensus 408 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~f~~~s~fp~~~~i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~ 486 (1367)
.. ....+..++.+||+.||++. |.||++||+||+++.|+.+.++.+|+++| ++.++.+
T Consensus 349 ~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~ 407 (1221)
T 1vt4_I 349 HV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVV 407 (1221)
T ss_dssp HC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHH
T ss_pred CC----------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC-----------HHHHHHH
T ss_conf 69----------86189999999998488999999999971779999877999998766778-----------8999999
Q ss_pred HHHHHHCCCCCCCCCCCCCEEEHHHHHHHHH
Q ss_conf 9999856863212689983151379999999
Q 000660 487 FKELRSRSFLQQSATDASLFVMHDLINDLAR 517 (1367)
Q Consensus 487 l~~L~~~~ll~~~~~~~~~~~~H~lv~~~~~ 517 (1367)
+++|+++||++.. .+..+|+|||++++++.
T Consensus 408 L~eLvdRSLLq~d-~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 408 VNKLHKYSLVEKQ-PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHTSSSSSBC-SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHCCEEEE-CCCCEEEEHHHHHHHHC
T ss_conf 9999961988986-89998986099999856
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=314.81 Aligned_cols=208 Identities=15% Similarity=0.073 Sum_probs=159.6
Q ss_pred CCCCEEEECCCCCHHHHH-HHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCC--CCCCCCCCCCCCCCE
Q ss_conf 887605882577211478-62036886535661245774547533478897658884146896--424899888667455
Q 000660 1068 PSLKSLEVLSCSKLESIA-ERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNL--VSFPEGGLPCAKLIK 1144 (1367)
Q Consensus 1068 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~--~~~p~~~~~l~~L~~ 1144 (1367)
++|+.|++..+.....++ ..+..+++|++|++++|.+....+..+..+++|+.|++++|... +.+|..+..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 88888867787575435755325754612784489975422764550075431011014644225667764555787899
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC---------CCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCC
Q ss_conf 99711578875664578889976788158899888---------768899998427882488332246654066678778
Q 000660 1145 FNISWCKGLEALPKGLHNLTSLQELTIGRGVELPS---------LEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFS 1215 (1367)
Q Consensus 1145 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~---------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~ 1215 (1367)
|++++|.+....+..+..+++|+.|++++|..... ...+..+++|+.|++++|.... .....+..++
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~----i~~~~~~~l~ 560 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE----IPVEVFKDLF 560 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC----CCTTTTTTCT
T ss_pred EECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCC----CCHHHCCCCC
T ss_conf 989999877679446345534688858899730000000467741423379988888899997887----7977734666
Q ss_pred CCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCC-CCC-CCCCCCEEEECCCCCCCCCC
Q ss_conf 63588845778857767300011004389899877587247777744454-445-69987679422899876789
Q 000660 1216 SLRHFKISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSS-SIV-DLQNLTSLYLKNCPKLKYFP 1288 (1367)
Q Consensus 1216 ~L~~L~l~~~~~~l~~l~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~-~l~~L~~L~l~~~~~l~~lp 1288 (1367)
+|+.|++++| .+..++.. .+..+++|+.|++++|.. ..++. .+. .+++|+.|++++||..-.-+
T Consensus 561 ~L~~L~Ls~N--~l~~l~~~------~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 561 ELKIIDLGLN--NLNTLPAS------VFNNQVSLKSLNLQKNLI-TSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCCEEECCSS--CCCCCCTT------TTTTCTTCCEEECTTSCC-CBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCEEECCCC--CCCCCCHH------HHCCCCCCCEEECCCCCC-CCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 7522389999--77767976------837898888898999968-705966830114665779831897025776
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=310.30 Aligned_cols=314 Identities=17% Similarity=0.158 Sum_probs=164.2
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 63469851797633578566887875489982489953248-87774666478723587446574121169999812899
Q 000660 901 RLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFP-EVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILE 979 (1367)
Q Consensus 901 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ 979 (1367)
.|+.|++++|......+..+..+++|+.|++++|... .+| .+..+++|+.|++++|.+....+..+ ..+++|+.|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG--GGCTTCSEEE
T ss_pred CEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHH--HCCCCCCEEE
T ss_conf 5059994457658557777445667888956288267-778214165468889771687686760233--0157689888
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 93078831123667756455466203788765522224346678765455657866178606999642355788402210
Q 000660 980 ILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLE 1059 (1367)
Q Consensus 980 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~l~ 1059 (1367)
+.++.....++.. . +..+++|+.+++++|.+...
T Consensus 332 l~~n~~~~~~~~~----~-----~~~l~~L~~L~l~~n~l~~~------------------------------------- 365 (606)
T 3t6q_A 332 IKGNTKRLELGTG----C-----LENLENLRELDLSHDDIETS------------------------------------- 365 (606)
T ss_dssp CCSCSSCCBCCSS----T-----TTTCTTCCEEECCSSCCCEE-------------------------------------
T ss_pred CCCCCCCCCCCHH----H-----HHCCCCCCEEECCCCCCCCC-------------------------------------
T ss_conf 9899744434624----5-----50667589887889966645-------------------------------------
Q ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-CCCC
Q ss_conf 012489988876058825772114786203688653566124577454753347889765888414689642489-9888
Q 000660 1060 SLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPE-GGLP 1138 (1367)
Q Consensus 1060 ~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~-~~~~ 1138 (1367)
...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|......+. .+..
T Consensus 366 ----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 366 ----------------------DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp ----------------------EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred ----------------------CCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHC
T ss_conf ----------------------6752210567888989898996775788873477457768788886777565212417
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 66745599711578875664578889976788158899888768899998427882488332246654066678778635
Q 000660 1139 CAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR 1218 (1367)
Q Consensus 1139 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~L~ 1218 (1367)
+++|+.|++++|.+....|..+..+++|+.|++++|.. .... ......+..+++|+
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----------------------~~~~-~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF-----------------------PKGN-IQKTNSLQTLGRLE 479 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC-----------------------GGGE-ECSSCGGGGCTTCC
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCC-----------------------CCCC-CCCCHHHCCCCCCC
T ss_conf 65588898989855776877873788788898989988-----------------------8543-45431240488766
Q ss_pred EEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC--CCCC
Q ss_conf 88845778857767300011004389899877587247777744454445699876794228998767898888--5544
Q 000660 1219 HFKISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPEKGL--PSSL 1296 (1367)
Q Consensus 1219 ~L~l~~~~~~l~~l~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~lp~~~~--~~sL 1296 (1367)
.|++++| .+..++.. .+..+++|+.|++++|......|..+..++.| .|++++| .++.++...+ +++|
T Consensus 480 ~L~Ls~n--~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L 549 (606)
T 3t6q_A 480 ILVLSFC--DLSSIDQH------AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQ 549 (606)
T ss_dssp EEECTTS--CCCEECTT------TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTS
T ss_pred EEECCCC--CCCCCCHH------HHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCC-CCCCCCHHHCCCCCCC
T ss_conf 8879999--66706864------63265678889898980686896684756651-8987689-4142687662567787
Q ss_pred CEEECCCCHHHHHHHHHCCCCCCC
Q ss_conf 534125891069988212999765
Q 000660 1297 LKLSIYDCPLIEEKCREDGGQYWA 1320 (1367)
Q Consensus 1297 ~~L~i~~cp~l~~~~~~~~~~~~~ 1320 (1367)
+.+++.+||. .+.|...+...|.
T Consensus 550 ~~L~l~~N~~-~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 550 RTINLRQNPL-DCTCSNIYFLEWY 572 (606)
T ss_dssp SEEECTTCCE-ECSGGGHHHHHHH
T ss_pred CEEECCCCCC-CCCCCCHHHHHHH
T ss_conf 8896779986-1667757899999
No 9
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=310.27 Aligned_cols=306 Identities=22% Similarity=0.320 Sum_probs=233.4
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC-CCCC-CEEEEEEECCCCCHHHHHH
Q ss_conf 6831344005999999982299899999369988677988289999999737243-2466-6299999189669999999
Q 000660 187 EAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV-QDHF-DLKAWTCVSDDFDVKRLTK 264 (1367)
Q Consensus 187 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gG~GKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~ 264 (1367)
.+.||||+.+++.|.+++... ....++++|+||||+||||||++++++..+ +.+| +.++|++++.. +...+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCEECCCHHHHHHHHHHHHCC----CCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC-CHHHHHH
T ss_conf 871405299999999998603----68884699976998988999999983556888528996599977877-6688999
Q ss_pred HH---HHHHHHCC---CCCCCCHHHHHHHHHHHHCC--CCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCHH
Q ss_conf 99---99943038---99999968999999999179--855999983787890115441155577999938999727525
Q 000660 265 TI---LTSIVASQ---NVGDPSLNSLQKELSKQLSG--KKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQE 336 (1367)
Q Consensus 265 ~i---l~~l~~~~---~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 336 (1367)
.+ +..++... .....+.+.....+...+.+ +++|||+||+|+. ..+. .+ ..|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCGG
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCH--HHHH----HH---CCCCEEEEECCCCH
T ss_conf 999999985035565567998899999999999706799869998589987--9998----76---37986999898817
Q ss_pred HHHHHCCCCCEEC---CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCH
Q ss_conf 8865179780517---8999677999998621299304899999999833997699999985520799999999998200
Q 000660 337 VAEIMGTVPSYQL---KKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSK 413 (1367)
Q Consensus 337 v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~l~~~ 413 (1367)
++..+. ...+++ ++|+.++++++|...++.......+.+.+|+++|+|+||||+++|+.++... ..|...++..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred HHHHCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_conf 777348-9826861588999899999999871898310459999999995898379999999984484--3599999999
Q ss_pred HHHC--------CCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 1000--------13545704799984507984677785251039888523799999999985986478999996899999
Q 000660 414 IWEL--------SEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRD 485 (1367)
Q Consensus 414 ~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~~f~~~s~fp~~~~i~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~ 485 (1367)
.... ......+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .+.+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~ 413 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVED 413 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC------------HHHHHH
T ss_conf 88689876511465437899999999986899999999974556799850899999996658------------899999
Q ss_pred HHHHHHHCCCCCCCCC-CCCCEEEHHHHHHHHHHHHC
Q ss_conf 9999985686321268-99831513799999998402
Q 000660 486 FFKELRSRSFLQQSAT-DASLFVMHDLINDLARWAAG 521 (1367)
Q Consensus 486 ~l~~L~~~~ll~~~~~-~~~~~~~H~lv~~~~~~~~~ 521 (1367)
++++|+++||++...+ ...+|+||+++|++++....
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 9999985958688548985679976899999986535
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=305.63 Aligned_cols=290 Identities=17% Similarity=0.121 Sum_probs=148.6
Q ss_pred CCCEEEE-CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 6346985-179763357856688787548998248995324887774666478723587446574121169999812899
Q 000660 901 RLEYIEL-RDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILE 979 (1367)
Q Consensus 901 ~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ 979 (1367)
.++.+.+ ..+...+..+. +..+++|+.|++++|.. ..++.+..+++|+.|++++|.+ +.+|. + .+++|+.|+
T Consensus 262 ~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~---~l~~L~~L~ 334 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFPT-L---DLPFLKSLT 334 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCCC-C---CCSSCCEEE
T ss_pred CHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCC-HHHHHCCCCCCCCEEECCCCCC-CCCCC-C---CCCCCCEEE
T ss_conf 4745012366555543222-35488789877147660-4435433401177897646667-65466-7---887556445
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 93078831123667756455466203788765522224346678765455657866178606999642355788402210
Q 000660 980 ILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLE 1059 (1367)
Q Consensus 980 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~l~ 1059 (1367)
+.++...... .+..+++|+.+++++|.+.+.
T Consensus 335 l~~n~~~~~~------------~~~~l~~L~~L~ls~n~l~~~------------------------------------- 365 (606)
T 3vq2_A 335 LTMNKGSISF------------KKVALPSLSYLDLSRNALSFS------------------------------------- 365 (606)
T ss_dssp EESCSSCEEC------------CCCCCTTCCEEECCSSCEEEE-------------------------------------
T ss_pred CCCCCCCCCH------------HHCCCCCCCEEECCCCCCCCC-------------------------------------
T ss_conf 4478685310------------002489888797758736877-------------------------------------
Q ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCC
Q ss_conf 01248998887605882577211478620368865356612457745475334788976588841468964248-99888
Q 000660 1060 SLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFP-EGGLP 1138 (1367)
Q Consensus 1060 ~~~~~~lp~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~ 1138 (1367)
..++..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+....+ ..+..
T Consensus 366 ----------------------~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 366 ----------------------GCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp ----------------------EECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred ----------------------CCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHC
T ss_conf ----------------------5201221467755486788995300-05540688888965898870587537645646
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 66745599711578875664578889976788158899888--7688999984278824883322466540666787786
Q 000660 1139 CAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPS--LEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSS 1216 (1367)
Q Consensus 1139 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~l~~ 1216 (1367)
+++|+.|++++|.+.+..|..+..+++|+.|++++|..... ...+..+++|+.|++++|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n------------------- 483 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC------------------- 483 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-------------------
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCC-------------------
T ss_conf 2137889896897874335553477878989898983798546776045788998989888-------------------
Q ss_pred CCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC--CCC
Q ss_conf 358884577885776730001100438989987758724777774445444569987679422899876789888--855
Q 000660 1217 LRHFKISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPEKG--LPS 1294 (1367)
Q Consensus 1217 L~~L~l~~~~~~l~~l~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~lp~~~--~~~ 1294 (1367)
.+..++.. .+..+++|+.|++++|......|..+..+++|+.|++++| .++.+|... .++
T Consensus 484 -----------~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~ 545 (606)
T 3vq2_A 484 -----------QLEQISWG------VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPK 545 (606)
T ss_dssp -----------CCCEECTT------TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCT
T ss_pred -----------CCCCCCHH------HHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCC-CCCCCCHHHHHHCC
T ss_conf -----------57764865------6154646898989899578748777068876898889898-37666876752102
Q ss_pred CCCEEECCCCHH
Q ss_conf 445341258910
Q 000660 1295 SLLKLSIYDCPL 1306 (1367)
Q Consensus 1295 sL~~L~i~~cp~ 1306 (1367)
+|+.+++.+||.
T Consensus 546 ~L~~l~l~~N~~ 557 (606)
T 3vq2_A 546 SLAFFNLTNNSV 557 (606)
T ss_dssp TCCEEECCSCCC
T ss_pred CCCEEECCCCCC
T ss_conf 174887628986
Done!