Query 000661
Match_columns 1367
No_of_seqs 485 out of 3307
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 18:01:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000661.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_431-435//hhsearch_pdb/000661hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 430.6 19.7 264 968-1251 40-321 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 428.2 16.9 263 969-1251 13-291 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 423.7 18.9 259 969-1247 26-304 (308)
4 4ase_A Vascular endothelial gr 1.0 1 1 416.1 17.6 274 959-1251 54-349 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 414.3 20.3 265 967-1252 34-303 (307)
6 4b9d_A Serine/threonine-protei 1.0 1 1 407.5 15.7 254 968-1245 23-279 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 405.5 18.5 252 968-1244 150-402 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 403.1 17.7 251 969-1244 74-325 (346)
9 3hmm_A TGF-beta receptor type- 1.0 1 1 399.9 17.0 274 969-1250 3-298 (303)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 399.4 13.1 251 969-1244 32-286 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=430.62 Aligned_cols=264 Identities=27% Similarity=0.456 Sum_probs=223.2
Q ss_pred HCCCCEEEEEEECCCEEEEEEEEC------CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEE
Q ss_conf 099214467720482799999952------89789999910234223689999999977225564457620332025167
Q 000661 968 TGNFDASRILGEGGFGLVYSGVLD------DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARC 1041 (1367)
Q Consensus 968 T~~Fei~eiLGkGaFGtVYKA~lk------dGk~VAVKvLkk~s~~~~keFlrEIeILkkLrHPNIVkLlGv~~e~~~~~ 1041 (1367)
.++|.+.+.||+|+||.||+|.+. +++.||||+++..+....++|.+|+++|++++|+|||+++|+|.+.+..|
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 89928877971477848998998786657789699999977579799999999999998589989996989999899899
Q ss_pred EEEEECCCCCHHHCCCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCC
Q ss_conf 89962389971000236655-----------7889866789999999999997431069995243012346813137886
Q 000661 1042 LVYELIPNGSVESHLHGVDK-----------ESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFT 1110 (1367)
Q Consensus 1042 LVmEYi~gGSL~d~L~~~~~-----------~s~~Lsw~erlkIAiQIA~GLaYLHs~gsp~IVHRDIKPsNILLDedg~ 1110 (1367)
+|||||++|+|.++|+.... ....++|.++++|+.|+++||+|||+.+ |+|||||++||||+.++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCC
T ss_conf 99982799939999986075410012211245788999999999999999999984088---422666676489889996
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHH
Q ss_conf 40116652000122234442111025545567410003987710005107999999960-99899999997503468853
Q 000661 1111 PKVSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDMTQPPGQENLVAWA 1189 (1367)
Q Consensus 1111 VKIsDFGLAr~i~~~~s~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLT-Gr~PFd~s~~~~~~nLV~Wa 1189 (1367)
+||+|||+|+..............+||..|||||++.+..++.++|||||||+||||+| |+.||..... ..+...+
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~---~~~~~~i 273 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN---TEAIDCI 273 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH---HHHHHHH
T ss_pred EEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCH---HHHHHHH
T ss_conf 8976660333656787530047645565665826544799996630010578999998289999999899---9999999
Q ss_pred HCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 10024434652331378899999135999999999815979689999999999999999750
Q 000661 1190 RPLLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 1251 (1367)
Q Consensus 1190 ~plls~~e~L~eIIDp~L~~~~p~ee~~eLleLI~kCLs~dPeeRPTMsEILq~Lk~Il~e~ 1251 (1367)
.. ..+...+..+..++.+|+.+||+.+|++||+|.||++.|+.+.+..
T Consensus 274 ~~--------------g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 274 TQ--------------GRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp HH--------------TCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred HC--------------CCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 80--------------8989986446399999999974759657929999999999874588
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=428.17 Aligned_cols=263 Identities=26% Similarity=0.433 Sum_probs=221.9
Q ss_pred CCCCEEEEEEECCCEEEEEEEEC------CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEE
Q ss_conf 99214467720482799999952------897899999102342236899999999772255644576203320251678
Q 000661 969 GNFDASRILGEGGFGLVYSGVLD------DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCL 1042 (1367)
Q Consensus 969 ~~Fei~eiLGkGaFGtVYKA~lk------dGk~VAVKvLkk~s~~~~keFlrEIeILkkLrHPNIVkLlGv~~e~~~~~L 1042 (1367)
++|.+.+.||+|+||.||+|.+. ++..||||+++.......++|.+|+++|++++|+|||+++|+|.+++..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHCCCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCCEE
Q ss_conf 996238997100023665---------57889866789999999999997431069995243012346813137886401
Q 000661 1043 VYELIPNGSVESHLHGVD---------KESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKV 1113 (1367)
Q Consensus 1043 VmEYi~gGSL~d~L~~~~---------~~s~~Lsw~erlkIAiQIA~GLaYLHs~gsp~IVHRDIKPsNILLDedg~VKI 1113 (1367)
|||||++|+|.++|+... .....++|.++++|+.|+++||+|||+.+ |+|||||++||||+.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 16652000122234442111025545567410003987710005107999999960-99899999997503468853100
Q 000661 1114 SDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDMTQPPGQENLVAWARPL 1192 (1367)
Q Consensus 1114 sDFGLAr~i~~~~s~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLT-Gr~PFd~s~~~~~~nLV~Wa~pl 1192 (1367)
+|||+|+..............+||..|||||++.++.|+.++|||||||+||||+| |+.||..... ..+...+..
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~---~~~~~~i~~- 245 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN---NEVIECITQ- 245 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH---HHHHHHHHH-
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH---HHHHHHHHC-
T ss_conf 8730010067887416647513470103889870799970366778899999998089999999899---999999980-
Q ss_pred CCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 24434652331378899999135999999999815979689999999999999999750
Q 000661 1193 LTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 1251 (1367)
Q Consensus 1193 ls~~e~L~eIIDp~L~~~~p~ee~~eLleLI~kCLs~dPeeRPTMsEILq~Lk~Il~e~ 1251 (1367)
......+..+..++.+|+.+||+.+|++||+|.||++.|+.+.+..
T Consensus 246 -------------~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 246 -------------GRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp -------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred -------------CCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf -------------8988997414399999999976879668929999999998777639
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=423.65 Aligned_cols=259 Identities=27% Similarity=0.389 Sum_probs=216.6
Q ss_pred CCCCEEEEEEECCCEEEEEEEEC------CCCEEEEEEEECC-CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEE
Q ss_conf 99214467720482799999952------8978999991023-4223689999999977225564457620332025167
Q 000661 969 GNFDASRILGEGGFGLVYSGVLD------DGTKVAVKVLKRV-DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARC 1041 (1367)
Q Consensus 969 ~~Fei~eiLGkGaFGtVYKA~lk------dGk~VAVKvLkk~-s~~~~keFlrEIeILkkLrHPNIVkLlGv~~e~~~~~ 1041 (1367)
.++++.+.||+|+||.||+|.+. +++.||||+++.. .....++|.+|+.++++++|+|||+++|+|.+.+..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 88858669135888489999985776588886999999880149689999999999998589989877364998899889
Q ss_pred EEEEECCCCCHHHCCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCC
Q ss_conf 89962389971000236655------------788986678999999999999743106999524301234681313788
Q 000661 1042 LVYELIPNGSVESHLHGVDK------------ESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDF 1109 (1367)
Q Consensus 1042 LVmEYi~gGSL~d~L~~~~~------------~s~~Lsw~erlkIAiQIA~GLaYLHs~gsp~IVHRDIKPsNILLDedg 1109 (1367)
+|||||++|+|.++|+.... ....++|.++++|+.|+|+||+|||+.+ |||||||++||||++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCC
T ss_conf 999818999499999862765433332211112468999999999999999999998689---97787362306887999
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEHHHHHHHHHH-CCCCCCCCCCCCCHHHHHH
Q ss_conf 640116652000122234442111025545567410003987710005107999999960-9989999999750346885
Q 000661 1110 TPKVSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDMTQPPGQENLVAW 1188 (1367)
Q Consensus 1110 ~VKIsDFGLAr~i~~~~s~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLT-Gr~PFd~s~~~~~~nLV~W 1188 (1367)
++||+|||+++.....+........+||..|||||++.++.|+.++|||||||+||||+| |+.||..... ..+...
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~---~~~~~~ 259 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN---QDVVEM 259 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH---HHHHHH
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH---HHHHHH
T ss_conf 78988760202336777404734512577656989982799996300015799999999689999999899---999999
Q ss_pred HHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 31002443465233137889999913599999999981597968999999999999999
Q 000661 1189 ARPLLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLV 1247 (1367)
Q Consensus 1189 a~plls~~e~L~eIIDp~L~~~~p~ee~~eLleLI~kCLs~dPeeRPTMsEILq~Lk~I 1247 (1367)
+.. ..+...+.++..++.+|+.+||+.+|++||+|.||++.|+..
T Consensus 260 i~~--------------~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 260 IRN--------------RQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHT--------------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHC--------------CCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf 981--------------998999620369999999997587965792999999999853
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=416.13 Aligned_cols=274 Identities=24% Similarity=0.360 Sum_probs=223.1
Q ss_pred CCHHHHHHHHCCCCEEEEEEECCCEEEEEEEECC------CCEEEEEEEECCC-CHHHHHHHHHHHHHHHCCC-CCEEEE
Q ss_conf 7978999880992144677204827999999528------9789999910234-2236899999999772255-644576
Q 000661 959 FSASEIEKATGNFDASRILGEGGFGLVYSGVLDD------GTKVAVKVLKRVD-QQGGREFLAEVEMLSRLHH-RNLVKL 1030 (1367)
Q Consensus 959 fsleELe~aT~~Fei~eiLGkGaFGtVYKA~lkd------Gk~VAVKvLkk~s-~~~~keFlrEIeILkkLrH-PNIVkL 1030 (1367)
++..+++.-.++|++.+.||+|+||.||+|.+.. ++.||||+++... ....++|.+|+++|++++| +|||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEEEC-CCEEEEEEECCCCCHHHCCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 2033202-516789962389971000236655------------788986678999999999999743106999524301
Q 000661 1031 IGICIEE-QARCLVYELIPNGSVESHLHGVDK------------ESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRD 1097 (1367)
Q Consensus 1031 lGv~~e~-~~~~LVmEYi~gGSL~d~L~~~~~------------~s~~Lsw~erlkIAiQIA~GLaYLHs~gsp~IVHRD 1097 (1367)
+|+|.+. +..++|||||++|+|.++|+.... ....++|.+++.|+.|+|+||.|||+++ |||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCC
T ss_conf 899994697799999838989799999743566654333410110356899999999999999987676278---43574
Q ss_pred CCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEHHHHHHHHHH-CCCCCCC
Q ss_conf 234681313788640116652000122234442111025545567410003987710005107999999960-9989999
Q 000661 1098 FKSSNILLEHDFTPKVSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDM 1176 (1367)
Q Consensus 1098 IKPsNILLDedg~VKIsDFGLAr~i~~~~s~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLT-Gr~PFd~ 1176 (1367)
||++||||++++.+||+|||+|+..............+||..|||||++.+..|+.++|||||||+||||+| |+.||..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 67211305799978979654322245688720325401466656989994699997553740689999998189999999
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999750346885310024434652331378899999135999999999815979689999999999999999750
Q 000661 1177 TQPPGQENLVAWARPLLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 1251 (1367)
Q Consensus 1177 s~~~~~~nLV~Wa~plls~~e~L~eIIDp~L~~~~p~ee~~eLleLI~kCLs~dPeeRPTMsEILq~Lk~Il~e~ 1251 (1367)
..... .+.... ....+...+..+..++.+++.+||+.+|++||+|.||++.|+.+++..
T Consensus 291 ~~~~~--~~~~~i--------------~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 291 VKIDE--EFCRRL--------------KEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp CCCSH--HHHHHH--------------HHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred CCHHH--HHHHHH--------------HCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89899--999999--------------738988888657899999999976869667939999999999999875
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=414.31 Aligned_cols=265 Identities=27% Similarity=0.441 Sum_probs=213.9
Q ss_pred HHCCCCEEEEEEECCCEEEEEEEECCCCEEEEEEEECC--CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEE
Q ss_conf 80992144677204827999999528978999991023--4223689999999977225564457620332025167899
Q 000661 967 ATGNFDASRILGEGGFGLVYSGVLDDGTKVAVKVLKRV--DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVY 1044 (1367)
Q Consensus 967 aT~~Fei~eiLGkGaFGtVYKA~lkdGk~VAVKvLkk~--s~~~~keFlrEIeILkkLrHPNIVkLlGv~~e~~~~~LVm 1044 (1367)
..++|++.+.||+|+||+||+|.+.+ .||||+++.. +....++|.+|+++|++++|+|||+++|+|.+ +..++||
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred CHHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEE
T ss_conf 47994984498208886899999899--68999997268999999999999999985899887469999978-9589999
Q ss_pred EECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCCEECCCCCCCCCCC
Q ss_conf 62389971000236655788986678999999999999743106999524301234681313788640116652000122
Q 000661 1045 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMD 1124 (1367)
Q Consensus 1045 EYi~gGSL~d~L~~~~~~s~~Lsw~erlkIAiQIA~GLaYLHs~gsp~IVHRDIKPsNILLDedg~VKIsDFGLAr~i~~ 1124 (1367)
|||++|+|.++|+.. ...++|.++++|+.|+|.||+|||+.+ |+|||||++|||||+++.+||+|||+|+....
T Consensus 111 Ey~~gGsL~~~l~~~---~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 184 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQ---ETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSR 184 (307)
T ss_dssp ECCSSCBHHHHHHTS---CCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC---
T ss_pred ECCCCCCHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 748998788987524---899999999999999999999997799---52785578997888999089944157542466
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCC---CCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCE
Q ss_conf 234442111025545567410003---98771000510799999996099899999997503468853100244346523
Q 000661 1125 EESRHISTRVMGTFGYVAPEYAMT---GHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLER 1201 (1367)
Q Consensus 1125 ~~s~~~st~vvGT~gYmAPEvL~~---~~~T~KSDVWSLGVILlELLTGr~PFd~s~~~~~~nLV~Wa~plls~~e~L~e 1201 (1367)
..........+||+.|||||++.. +.|+.++|||||||+||||+||+.||...+... .+........
T Consensus 185 ~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~--~~~~~~~~~~-------- 254 (307)
T 3omv_A 185 WSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD--QIIFMVGRGY-------- 254 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH--HHHHHHHTTC--------
T ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHHHCCC--------
T ss_conf 776403156446877249878614689987868775728999999997889989999699--9999996588--------
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 313788999991359999999998159796899999999999999997501
Q 000661 1202 IIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNECD 1252 (1367)
Q Consensus 1202 IIDp~L~~~~p~ee~~eLleLI~kCLs~dPeeRPTMsEILq~Lk~Il~e~~ 1252 (1367)
..+.+ .....++...+.+|+.+||+.+|++||+|.||++.|+.+...+.
T Consensus 255 -~~p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 255 -ASPDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp -CCCCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred -CCCCC-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCC
T ss_conf -88872-00354456999999999757797689098999999999745078
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=407.50 Aligned_cols=254 Identities=23% Similarity=0.327 Sum_probs=211.0
Q ss_pred HCCCCEEEEEEECCCEEEEEEEE-CCCCEEEEEEEECC--CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEE
Q ss_conf 09921446772048279999995-28978999991023--4223689999999977225564457620332025167899
Q 000661 968 TGNFDASRILGEGGFGLVYSGVL-DDGTKVAVKVLKRV--DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVY 1044 (1367)
Q Consensus 968 T~~Fei~eiLGkGaFGtVYKA~l-kdGk~VAVKvLkk~--s~~~~keFlrEIeILkkLrHPNIVkLlGv~~e~~~~~LVm 1044 (1367)
.++|++.+.||+|+||.||+|+. .+|+.||||+++.. .....++|.+|+++|++|+|+|||++++++.+++..|+||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 12558847970277939999998899989999998658789799999999999998779989891999999899999999
Q ss_pred EECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCCEECCCCCCCCCCC
Q ss_conf 62389971000236655788986678999999999999743106999524301234681313788640116652000122
Q 000661 1045 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMD 1124 (1367)
Q Consensus 1045 EYi~gGSL~d~L~~~~~~s~~Lsw~erlkIAiQIA~GLaYLHs~gsp~IVHRDIKPsNILLDedg~VKIsDFGLAr~i~~ 1124 (1367)
|||+||+|.++|... ....+++.+++.|+.||+.||.|||+++ |+|||||++||||+.++.+||+|||+|+....
T Consensus 103 Ey~~gg~L~~~i~~~--~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 177 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQ--KGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS 177 (350)
T ss_dssp ECCTTCBHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred ECCCCCCHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECC
T ss_conf 488998399999973--8999978999999999999999999899---15135978997987899989764652144068
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEC
Q ss_conf 23444211102554556741000398771000510799999996099899999997503468853100244346523313
Q 000661 1125 EESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIID 1204 (1367)
Q Consensus 1125 ~~s~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLTGr~PFd~s~~~~~~nLV~Wa~plls~~e~L~eIID 1204 (1367)
. .......+||+.|||||++.+..|+.++|||||||+||||++|+.||...+. ..+.... ..
T Consensus 178 ~--~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~---~~~~~~i---~~---------- 239 (350)
T 4b9d_A 178 T--VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM---KNLVLKI---IS---------- 239 (350)
T ss_dssp H--HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHH---HH----------
T ss_pred C--CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHH---HC----------
T ss_conf 8--5410145788360399998799989599999999999999978799899699---9999999---80----------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 78899999135999999999815979689999999999999
Q 000661 1205 PSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALK 1245 (1367)
Q Consensus 1205 p~L~~~~p~ee~~eLleLI~kCLs~dPeeRPTMsEILq~Lk 1245 (1367)
... .........++.+|+.+||+.||++||++.|+++.-+
T Consensus 240 ~~~-~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~ 279 (350)
T 4b9d_A 240 GSF-PPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGF 279 (350)
T ss_dssp TCC-CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHH
T ss_pred CCC-CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHH
T ss_conf 899-9997557999999999985589667908999963997
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=405.50 Aligned_cols=252 Identities=25% Similarity=0.357 Sum_probs=210.7
Q ss_pred HCCCCEEEEEEECCCEEEEEEEE-CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 09921446772048279999995-28978999991023422368999999997722556445762033202516789962
Q 000661 968 TGNFDASRILGEGGFGLVYSGVL-DDGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVYEL 1046 (1367)
Q Consensus 968 T~~Fei~eiLGkGaFGtVYKA~l-kdGk~VAVKvLkk~s~~~~keFlrEIeILkkLrHPNIVkLlGv~~e~~~~~LVmEY 1046 (1367)
.+.|++.+.||+|+||.||+|.. .+|+.||||++........+.+.+|+++|++++|+|||++++++.+++.+||||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCCEECCCCCCCCCCCCC
Q ss_conf 38997100023665578898667899999999999974310699952430123468131378864011665200012223
Q 000661 1047 IPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMDEE 1126 (1367)
Q Consensus 1047 i~gGSL~d~L~~~~~~s~~Lsw~erlkIAiQIA~GLaYLHs~gsp~IVHRDIKPsNILLDedg~VKIsDFGLAr~i~~~~ 1126 (1367)
|+||+|.+++.. ..+++.++..|+.||+.||+|||+++ |+|||||++||||+.++.+||+|||+|+.+...
T Consensus 230 ~~gG~L~~~i~~-----~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~- 300 (423)
T 4fie_A 230 LEGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE- 300 (423)
T ss_dssp CTTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSS-
T ss_pred CCCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCC-
T ss_conf 899828988761-----69899999999999999999999889---044657877789858999898037265477788-
Q ss_pred CCCCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCC
Q ss_conf 44421110255455674100039877100051079999999609989999999750346885310024434652331378
Q 000661 1127 SRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIIDPS 1206 (1367)
Q Consensus 1127 s~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLTGr~PFd~s~~~~~~nLV~Wa~plls~~e~L~eIIDp~ 1206 (1367)
.......+||+.|||||++.+..|+.++|||||||+||||++|+.||...+.. .+...+.... ...
T Consensus 301 -~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~---~~~~~i~~~~----------~~~ 366 (423)
T 4fie_A 301 -VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL---KAMKMIRDNL----------PPR 366 (423)
T ss_dssp -CCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH---HHHHHHHHSC----------CCC
T ss_pred -CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHCCC----------CCC
T ss_conf -76434666474727999977999996899999999999999787998986999---9999997279----------988
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 89999913599999999981597968999999999999
Q 000661 1207 LGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQAL 1244 (1367)
Q Consensus 1207 L~~~~p~ee~~eLleLI~kCLs~dPeeRPTMsEILq~L 1244 (1367)
+ ........++.+|+.+||..||++|+++.|+++.-
T Consensus 367 ~--~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp 402 (423)
T 4fie_A 367 L--KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHP 402 (423)
T ss_dssp C--SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCG
T ss_pred C--CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCH
T ss_conf 7--65012999999999998678956890999996098
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=403.14 Aligned_cols=251 Identities=24% Similarity=0.350 Sum_probs=210.3
Q ss_pred CCCCEEEEEEECCCEEEEEEEE-CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEEC
Q ss_conf 9921446772048279999995-289789999910234223689999999977225564457620332025167899623
Q 000661 969 GNFDASRILGEGGFGLVYSGVL-DDGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVYELI 1047 (1367)
Q Consensus 969 ~~Fei~eiLGkGaFGtVYKA~l-kdGk~VAVKvLkk~s~~~~keFlrEIeILkkLrHPNIVkLlGv~~e~~~~~LVmEYi 1047 (1367)
+.|++.+.||+|+||.||+|.. .+|+.||||+++.......+.+.+|+++|++++|+|||++++++.+++..|||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCCEECCCCCCCCCCCCCC
Q ss_conf 89971000236655788986678999999999999743106999524301234681313788640116652000122234
Q 000661 1048 PNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMDEES 1127 (1367)
Q Consensus 1048 ~gGSL~d~L~~~~~~s~~Lsw~erlkIAiQIA~GLaYLHs~gsp~IVHRDIKPsNILLDedg~VKIsDFGLAr~i~~~~s 1127 (1367)
++|+|.+++.. ..+++.++..|+.|++.||+|||+++ |+|||||++||||+.++.+||+|||+|+.....
T Consensus 154 ~gg~L~~~l~~-----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~-- 223 (346)
T 4fih_A 154 EGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-- 223 (346)
T ss_dssp TTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSS--
T ss_pred CCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCC--
T ss_conf 99808999871-----89899999999999999999999888---355627889978879998899027575366788--
Q ss_pred CCCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCC
Q ss_conf 44211102554556741000398771000510799999996099899999997503468853100244346523313788
Q 000661 1128 RHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIIDPSL 1207 (1367)
Q Consensus 1128 ~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLTGr~PFd~s~~~~~~nLV~Wa~plls~~e~L~eIIDp~L 1207 (1367)
.......+||+.|||||++.+..|+.++|||||||+||||++|+.||...+.. .+...+.... ...
T Consensus 224 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~---~~~~~i~~~~----------~~~- 289 (346)
T 4fih_A 224 VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL---KAMKMIRDNL----------PPR- 289 (346)
T ss_dssp SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH---HHHHHHHHSS----------CCC-
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHCCC----------CCC-
T ss_conf 77534656275827999977999996899999999999999787998985999---9999997179----------998-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9999913599999999981597968999999999999
Q 000661 1208 GNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQAL 1244 (1367)
Q Consensus 1208 ~~~~p~ee~~eLleLI~kCLs~dPeeRPTMsEILq~L 1244 (1367)
.........++.+|+.+||..||++|+++.|+++.-
T Consensus 290 -~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp 325 (346)
T 4fih_A 290 -LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHP 325 (346)
T ss_dssp -CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCG
T ss_pred -CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCH
T ss_conf -875022999999999998679956890999996098
No 9
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=399.86 Aligned_cols=274 Identities=23% Similarity=0.300 Sum_probs=205.4
Q ss_pred CCCCEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC----CEEEEE
Q ss_conf 9921446772048279999995289789999910234223689999999977225564457620332025----167899
Q 000661 969 GNFDASRILGEGGFGLVYSGVLDDGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQ----ARCLVY 1044 (1367)
Q Consensus 969 ~~Fei~eiLGkGaFGtVYKA~lkdGk~VAVKvLkk~s~~~~keFlrEIeILkkLrHPNIVkLlGv~~e~~----~~~LVm 1044 (1367)
++|.+.+.||+|+||.||+|.+. |+.||||+++... .....+.+|+..+.+++|+|||+++|+|.+++ ..|+||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 58999789840899399999999-9899999988313-366999999999860899988709999984688723788775
Q ss_pred EECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-----CCCEEEECCCCCCEEECCCCCCEECCCCCC
Q ss_conf 623899710002366557889866789999999999997431069-----995243012346813137886401166520
Q 000661 1045 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDS-----SPRVIHRDFKSSNILLEHDFTPKVSDFGLA 1119 (1367)
Q Consensus 1045 EYi~gGSL~d~L~~~~~~s~~Lsw~erlkIAiQIA~GLaYLHs~g-----sp~IVHRDIKPsNILLDedg~VKIsDFGLA 1119 (1367)
|||++|+|.++|+. ..++|.++++|+.|+++||+|||+++ .++|+|||||++|||||.++++||+|||+|
T Consensus 81 Ey~~~gsL~~~l~~-----~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla 155 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR-----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp ECCTTCBHHHHHHH-----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred CCCCCCCHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCC
T ss_conf 17899968999975-----7999899999999999999999985240047898762467842089988997899847987
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCCCCCHHCCC------CCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 001222344--421110255455674100039------877100051079999999609989999999750346885310
Q 000661 1120 RSAMDEESR--HISTRVMGTFGYVAPEYAMTG------HLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARP 1191 (1367)
Q Consensus 1120 r~i~~~~s~--~~st~vvGT~gYmAPEvL~~~------~~T~KSDVWSLGVILlELLTGr~PFd~s~~~~~~nLV~Wa~p 1191 (1367)
+........ ......+||..|||||++.+. .++.++|||||||+||||+||+.+|......... ...+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p-~~~~~~~ 234 (303)
T 3hmm_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP-YYDLVPS 234 (303)
T ss_dssp EEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCT-TTTTSCS
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHCCCC
T ss_conf 455677773221046424664626988845654556776570676664799999998789987766522353-1002545
Q ss_pred CCCCCCCCCEEECCCCCCCCC-----HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 024434652331378899999-----13599999999981597968999999999999999975
Q 000661 1192 LLTSREGLERIIDPSLGNDVP-----FDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNE 1250 (1367)
Q Consensus 1192 lls~~e~L~eIIDp~L~~~~p-----~ee~~eLleLI~kCLs~dPeeRPTMsEILq~Lk~Il~e 1250 (1367)
..........+.+..++...+ .++...+.+|+.+||+.+|++||||.||++.|+.+.++
T Consensus 235 ~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 235 DPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp SCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 4309999998750257998876556658999999999997605975795999999999988987
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=399.44 Aligned_cols=251 Identities=24% Similarity=0.322 Sum_probs=211.1
Q ss_pred CCCCEEEEEEECCCEEEEEEEE-CCCCEEEEEEEECC---CCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEE
Q ss_conf 9921446772048279999995-28978999991023---4223689999999977225564457620332025167899
Q 000661 969 GNFDASRILGEGGFGLVYSGVL-DDGTKVAVKVLKRV---DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVY 1044 (1367)
Q Consensus 969 ~~Fei~eiLGkGaFGtVYKA~l-kdGk~VAVKvLkk~---s~~~~keFlrEIeILkkLrHPNIVkLlGv~~e~~~~~LVm 1044 (1367)
++|++.+.||+|+||+||+|+. .+++.||||++.+. +....+.+.+|+++|++++|+|||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCCEECCCCCCCCCCC
Q ss_conf 62389971000236655788986678999999999999743106999524301234681313788640116652000122
Q 000661 1045 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMD 1124 (1367)
Q Consensus 1045 EYi~gGSL~d~L~~~~~~s~~Lsw~erlkIAiQIA~GLaYLHs~gsp~IVHRDIKPsNILLDedg~VKIsDFGLAr~i~~ 1124 (1367)
|||+||+|.++|.. ...+++.+...|+.||+.||.|||+++ |+|||||++||||+.++.+||+|||+|+....
T Consensus 112 Ey~~gG~L~~~i~~----~~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~ 184 (311)
T 4aw0_A 112 SYAKNGELLKYIRK----IGSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184 (311)
T ss_dssp CCCTTEEHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred ECCCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 64899899999987----499999999999999999999999887---82687878996985898889987687502577
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEC
Q ss_conf 23444211102554556741000398771000510799999996099899999997503468853100244346523313
Q 000661 1125 EESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIID 1204 (1367)
Q Consensus 1125 ~~s~~~st~vvGT~gYmAPEvL~~~~~T~KSDVWSLGVILlELLTGr~PFd~s~~~~~~nLV~Wa~plls~~e~L~eIID 1204 (1367)
..........+||+.|||||++.+..|+.++||||+||+||||++|+.||...+. ..+.... ...
T Consensus 185 ~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~---~~~~~~i---~~~--------- 249 (311)
T 4aw0_A 185 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE---GLIFAKI---IKL--------- 249 (311)
T ss_dssp TTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHH---HHT---------
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHH---HCC---------
T ss_conf 8776543675568030799897689999689899899999999749899899799---9999999---719---------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 7889999913599999999981597968999999999999
Q 000661 1205 PSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQAL 1244 (1367)
Q Consensus 1205 p~L~~~~p~ee~~eLleLI~kCLs~dPeeRPTMsEILq~L 1244 (1367)
. ..++.....++.+|+.+||..||++|+++.|++..-
T Consensus 250 -~--~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~ 286 (311)
T 4aw0_A 250 -E--YDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYG 286 (311)
T ss_dssp -C--CCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHH
T ss_pred -C--CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCCCH
T ss_conf -9--999965699999999997628975780967975877
Done!