BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000665
(1363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 135/336 (40%), Gaps = 50/336 (14%)
Query: 97 LLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKV 156
LLD +++++ + A ++ V+R +KE+ + + I AGA +L L
Sbjct: 133 LLDPQCHLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLAD 192
Query: 157 NDT-LEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAM 215
+ LE L++ + ++L ++ + ++L+ L +
Sbjct: 193 SACQLETLRLENCGLTPANCKDLCGIVASQASLRELDL---------------------- 230
Query: 216 EVHVWSGENGEKSSKVVEFLP-------ENGTLRIYRLDVSGS-CRVACS-LGCNTTVKS 266
G NG + + E P TL ++ D++ S CR C L T+K
Sbjct: 231 ------GSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLKE 284
Query: 267 LDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTC-LKDKGVVYVAAGLFKNRSLESLYL 325
L + G +L A+ L Q E + K+C L +V+ L +N+ L L L
Sbjct: 285 LSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQL 344
Query: 326 HGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNET 385
N G++ L L SQ TLR + G ++ G +++ +L N +
Sbjct: 345 SSNKLGDSGIQELCQAL-------SQPGTTLRVLCL--GDCEVTNSGCSSLASLLLANRS 395
Query: 386 VTQLGIYDDQSLRPDDFVRIFKSL-QKNASLRQLSL 420
+ +L + ++ P +++ SL Q +L QL L
Sbjct: 396 LRELDLSNNCVGDP-GVLQLLGSLEQPGCALEQLVL 430
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 125/297 (42%), Gaps = 59/297 (19%)
Query: 71 KAHTSLKHLEFHSVEWEIEQMRILGL-LLDCSSNVKQVVFRRNKFDAECLAEISDVVRRN 129
+A +LK L + + R+LG L D + ++ + ++ +V
Sbjct: 163 RATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVASQ 222
Query: 130 GVIKEVMFTESGIKNAG-ASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTL 188
++E+ +G+ +AG A L L L+ L +WE I + G +L ++++A TL
Sbjct: 223 ASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETL 282
Query: 189 KSLTI----------------------------FDSSSLTATPL--ISAVLARNR-AMEV 217
K L++ S SLTA +S +L +N+ +E+
Sbjct: 283 KELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLEL 342
Query: 218 HVWSGENGEKS-SKVVEFLPENGT-LRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLK 275
+ S + G+ ++ + L + GT LR+ L G C V S GC++
Sbjct: 343 QLSSNKLGDSGIQELCQALSQPGTTLRVLCL---GDCEVTNS-GCSSLAS---------- 388
Query: 276 SRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFK-NRSLESLYLHGNWFS 331
+L N+SL+E+ LS C+ D GV+ + L + +LE L L+ +++
Sbjct: 389 ---------LLLANRSLRELDLSNNCVGDPGVLQLLGSLEQPGCALEQLVLYDTYWT 436
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 92/227 (40%), Gaps = 33/227 (14%)
Query: 121 EISDVVRRNGVIKEVMFTESGIKNAG-ASLLASALKVNDTLEELQIWEDSIGSKGAEELS 179
++ DVV ++E+ + + + NAG A+L L + L L +WE I ++G ++L
Sbjct: 214 DLCDVVASKASLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLC 273
Query: 180 KMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENG 239
+++ A +LK L+ LA N + E + + E L E G
Sbjct: 274 RVLRAKQSLKELS----------------LASNELKD---------EGARLLCESLLEPG 308
Query: 240 T-LRIYRLDVSGSCRVACSLGCNTTVKS-----LDMTGVRLKSRWAKEFRWVLQQNQS-L 292
L + +C C+ KS L M+ L +E L Q + L
Sbjct: 309 CQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEGVQELCKALSQPDTVL 368
Query: 293 KEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLL 339
+E+ L + + G +A L NRSL L L N G GV LL
Sbjct: 369 RELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGGPGVLQLL 415
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 547 LKDEDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKP 592
+ DED R+ +W+ AGQ EF ++ + G+ +C L+ S+ R+
Sbjct: 49 VNDEDVRLMLWDTAGQEEFDAITKAYY--RGAQACVLVFSTTDRES 92
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 19/233 (8%)
Query: 97 LLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKV 156
LLD ++++ A ++ V+R KE+ + + I AG +L LK
Sbjct: 136 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 195
Query: 157 NDT-LEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDS--SSLTATPLISAVL-ARN 212
+ LE L++ + S +L ++ + ++L+ L + + + L +L +
Sbjct: 196 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 255
Query: 213 RAMEVHVW-SGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTG 271
R + +W G + + L +L+ L + L C T ++ G
Sbjct: 256 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE----PG 311
Query: 272 VRLKSRWAKE----------FRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGL 314
+L+S W K F VL QN+ L E+ +S L+D GV + GL
Sbjct: 312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 364
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 41/231 (17%)
Query: 121 EISDVVRRNGVIKEVMFTESGIKNAG-ASLLASALKVNDTLEELQIWEDSIGSKGAEELS 179
++ +V ++E+ + + + G A L L + L L IWE I +KG +L
Sbjct: 217 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 276
Query: 180 KMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVV-EFLPEN 238
+++ A +LK L+ LA N E G++ ++++ E L E
Sbjct: 277 RVLRAKESLKELS----------------LAGN----------ELGDEGARLLCETLLEP 310
Query: 239 G----TLRIYRLDVSGSCRVACS-----LGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQN 289
G +L + + +C CS L N + L ++ RL+ +E L Q
Sbjct: 311 GCQLESLWVKSCSFTAAC---CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP 367
Query: 290 QSLKEVI-LSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLL 339
S+ V+ L+ + D +AA L N SL L L N G+ L+
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 31/156 (19%)
Query: 71 KAHTSLKHLEFHSVEWEIEQMRILG-LLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRN 129
+A SLK L E E R+L LL+ ++ + + F A C + S V+ +N
Sbjct: 280 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 339
Query: 130 GVIKEVMFTESGIKNAGA-----------------------------SLLASALKVNDTL 160
+ E+ + + +++AG S LA+ L N +L
Sbjct: 340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 399
Query: 161 EELQIWEDSIGSKGAEELSKMI-EANSTLKSLTIFD 195
EL + + +G G +L + + + L+ L ++D
Sbjct: 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 435
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 19/233 (8%)
Query: 97 LLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKV 156
LLD ++++ A ++ V+R KE+ + + I AG +L LK
Sbjct: 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 196
Query: 157 NDT-LEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDS--SSLTATPLISAVL-ARN 212
+ LE L++ + S +L ++ + ++L+ L + + + L +L +
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256
Query: 213 RAMEVHVW-SGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTG 271
R + +W G + + L +L+ L + L C T ++ G
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE----PG 312
Query: 272 VRLKSRWAKE----------FRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGL 314
+L+S W K F VL QN+ L E+ +S L+D GV + GL
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 41/231 (17%)
Query: 121 EISDVVRRNGVIKEVMFTESGIKNAG-ASLLASALKVNDTLEELQIWEDSIGSKGAEELS 179
++ +V ++E+ + + + G A L L + L L IWE I +KG +L
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277
Query: 180 KMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVV-EFLPEN 238
+++ A +LK L+ LA N E G++ ++++ E L E
Sbjct: 278 RVLRAKESLKELS----------------LAGN----------ELGDEGARLLCETLLEP 311
Query: 239 G----TLRIYRLDVSGSCRVACS-----LGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQN 289
G +L + + +C CS L N + L ++ RL+ +E L Q
Sbjct: 312 GCQLESLWVKSCSFTAAC---CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP 368
Query: 290 QSLKEVI-LSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLL 339
S+ V+ L+ + D +AA L N SL L L N G+ L+
Sbjct: 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 31/156 (19%)
Query: 71 KAHTSLKHLEFHSVEWEIEQMRILG-LLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRN 129
+A SLK L E E R+L LL+ ++ + + F A C + S V+ +N
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340
Query: 130 GVIKEVMFTESGIKNAGA-----------------------------SLLASALKVNDTL 160
+ E+ + + +++AG S LA+ L N +L
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400
Query: 161 EELQIWEDSIGSKGAEELSKMI-EANSTLKSLTIFD 195
EL + + +G G +L + + + L+ L ++D
Sbjct: 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 484 MPLTEPKSCRVFFCGQEYAGKTTLCNSI-SQNFSSSKLPYIEQVRTLVNPVEQAVRPVGM 542
+P + + G +Y+GKTT N I S FS +P VG
Sbjct: 15 VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIP-----------------TVGF 57
Query: 543 KIKTLKDEDTRISIWNLAGQHEFYSL 568
++ + + I IW++ GQ F S+
Sbjct: 58 NMRKVTKGNVTIKIWDIGGQPRFRSM 83
>pdb|1B7G|O Chain O, Glyceraldehyde 3-phosphate Dehydrogenase
pdb|1B7G|Q Chain Q, Glyceraldehyde 3-phosphate Dehydrogenase
Length = 340
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 11/76 (14%)
Query: 72 AHTSLKHLEFHSVEWE--IEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVR-- 127
A T+L H+ F ++ + +E+ IL +L N ++V +K+DAE AE+ +V R
Sbjct: 213 APTTLMHMHFINITLKDKVEKKDILSVL----ENTPRIVLISSKYDAEATAELVEVARDL 268
Query: 128 ---RNGVIKEVMFTES 140
RN + + ++F++S
Sbjct: 269 KRDRNDIPEVMIFSDS 284
>pdb|3ZF7|KK Chain k, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 127
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 334 GVEHLLCPLSRFSSLQSQANITLRSVTFGG---GRTKIGRDGIAAILQMLTTNETVTQLG 390
G + LL LS F SQ ++ + + G GR + R GIA I+ +L NE
Sbjct: 14 GKDDLLKQLSEFKKELSQLRVS-QQMNVGAARLGRIRTIRKGIARIMTVLNKNERENLRK 72
Query: 391 IYDDQSLR 398
Y D+ LR
Sbjct: 73 FYSDKKLR 80
>pdb|1IO0|A Chain A, Crystal Structure Of Tropomodulin C-Terminal Half
Length = 185
Score = 33.5 bits (75), Expect = 0.90, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 119 LAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEEL 178
L ++ ++ N +K+ + + A LA LKVN+TL+ L + + I G L
Sbjct: 54 LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113
Query: 179 SKMIEANSTLKSLTIFDSS 197
+ +++N++L L I + S
Sbjct: 114 VEALQSNTSLIELRIDNQS 132
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 18/86 (20%)
Query: 484 MPLTEPKSCRVFFCGQEYAGKTTLCNSI-SQNFSSSKLPYIEQVRTLVNPVEQAVRPVGM 542
+P + + G +Y+GKTT N I S F+ +P VG
Sbjct: 15 VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIP-----------------TVGF 57
Query: 543 KIKTLKDEDTRISIWNLAGQHEFYSL 568
++ + + I +W++ GQ F S+
Sbjct: 58 NMRKITKGNVTIKLWDIGGQPRFRSM 83
>pdb|4DJD|C Chain C, Crystal Structure Of Folate-Free Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr)
pdb|4DJD|E Chain E, Crystal Structure Of Folate-Free Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr)
pdb|4DJE|C Chain C, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate
pdb|4DJE|E Chain E, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate
pdb|4DJF|C Chain C, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate And Ti(Iii) Citrate
Reductant
pdb|4DJF|E Chain E, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate And Ti(Iii) Citrate
Reductant
Length = 446
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 79 LEFHSVEWEIEQMRILGLLLDCSSNVKQVV--FRRNKFDAECLAEISDVVRRNGVIKEVM 136
L ++SVE EIE +I LL ++ V+ + KF+AE +A + V + +K
Sbjct: 345 LTYYSVEGEIESTKIPSYLLSVDTDGLSVLTAYADGKFEAEKIAAVMKKVDLDNKVKRHR 404
Query: 137 FTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEAN 185
G + + LE+L WE +G + A + AN
Sbjct: 405 IIIPG----------AVAVLKGKLEDLTGWEVIVGPREASGIVAFARAN 443
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 18/76 (23%)
Query: 496 FCGQEYAGKTTLCNSI-SQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRI 554
G +Y+GKTT N I S F+ +P VG ++ + + I
Sbjct: 36 LVGLQYSGKTTFVNVIASGQFNEDMIP-----------------TVGFNMRKITKGNVTI 78
Query: 555 SIWNLAGQHEFYSLHD 570
+W++ GQ F S+ +
Sbjct: 79 KLWDIGGQPRFRSMWE 94
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKD 549
K R+ G + AGKTT+ + S + +P VG ++T+
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIP-----------------TVGFNVETVTY 54
Query: 550 EDTRISIWNLAGQHEFYSLHDLMFPG 575
++ + ++W++ GQ + L + G
Sbjct: 55 KNVKFNVWDVGGQDKIRPLWRHYYTG 80
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 480 LLKDMPLTEPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRP 539
+LK M E + R+ G + AGKTT+ + E V T ++P
Sbjct: 8 ILKKMKQKE-RELRLLMLGLDNAGKTTILKKFNG----------EDVDT-ISPT------ 49
Query: 540 VGMKIKTLKDEDTRISIWNLAGQHEFYS 567
+G IKTL+ +++IW++ GQ S
Sbjct: 50 LGFNIKTLEHRGFKLNIWDVGGQKSLRS 77
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKD 549
K R+ G + AGKTT+ + S + +P VG ++T+
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIP-----------------TVGFNVETVTY 53
Query: 550 EDTRISIWNLAGQHEFYSLHDLMFPG 575
++ + ++W++ GQ + L + G
Sbjct: 54 KNVKFNVWDVGGQDKIRPLWRHYYTG 79
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 759 RRAIATCLHHIGEVIYFDELGF---LILDCEWFCSEVLSKLIKLEVRKQSSLENNGFTSR 815
R+ + L+++G V+YF+ L +LD W V + SS NG +
Sbjct: 258 RKTLLGYLNNLGIVLYFEALDLSEIYVLDPHWVTIGVYRII-------NSSKTKNGHLNT 310
Query: 816 KELEKILRGSLQSQI------PGMGSK-VFENLEASDLVRMMLKLELCYEQDPSDPDSLL 868
L IL + QI P +K + LE L+ +M + ELCY++ L
Sbjct: 311 SALGYILN---EEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEG----KGLF 363
Query: 869 LIPSIL 874
+IPS L
Sbjct: 364 IIPSNL 369
>pdb|3DPT|A Chain A, Cor Domain Of Rab Family Protein (Roco)
pdb|3DPT|B Chain B, Cor Domain Of Rab Family Protein (Roco)
Length = 332
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 759 RRAIATCLHHIGEVIYFDELGF---LILDCEWFCSEVLSKLIKLEVRKQSSLENNGFTSR 815
R+ + L+++G V+YF+ L +LD W V + SS NG +
Sbjct: 55 RKTLLGYLNNLGIVLYFEALDLSEIYVLDPHWVTIGVYRII-------NSSKTKNGHLNT 107
Query: 816 KELEKILRGSLQSQI------PGMGSK-VFENLEASDLVRMMLKLELCYEQDPSDPDSLL 868
L IL + QI P +K + LE L+ +M + ELCY++ L
Sbjct: 108 SALGYILN---EEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEG----KGLF 160
Query: 869 LIPSIL 874
+IPS L
Sbjct: 161 IIPSNL 166
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDT 552
++ G +GKTTL + + + K Q T V V+ ++I+ + D
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXK---TKKSDLGXQSAT----VGIDVKDWPIQIRDKRKRDL 56
Query: 553 RISIWNLAGQHEFYSLH 569
+++W+ AG+ EFYS H
Sbjct: 57 VLNVWDFAGREEFYSTH 73
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 18/88 (20%)
Query: 480 LLKDMPLTEPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRP 539
+LK M E + R+ G + AGKTT I + F+ E V T ++P
Sbjct: 8 ILKKMKQKE-RELRLLMLGLDNAGKTT----ILKKFNG------EDVDT-ISPT------ 49
Query: 540 VGMKIKTLKDEDTRISIWNLAGQHEFYS 567
+G IKTL+ +++IW++ GQ S
Sbjct: 50 LGFNIKTLEHRGFKLNIWDVGGQKSLRS 77
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDT 552
++ G +GKTTL + + + K Q T V V+ ++I+ + D
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXK---TKKSDLGXQSAT----VGIDVKDWPIQIRDKRKRDL 54
Query: 553 RISIWNLAGQHEFYSLH 569
+++W+ AG+ EFYS H
Sbjct: 55 VLNVWDFAGREEFYSTH 71
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 29/124 (23%)
Query: 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT--LKDE 550
+V G GKT+L + + + E ++ V V KIKT L+ +
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDD------TFCEACKSTVG--------VDFKIKTVELRGK 73
Query: 551 DTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYW 610
R+ IW+ AGQ F S+ + SA +++ + +K E +DL W
Sbjct: 74 KIRLQIWDTAGQERFNSITSAYYR---SAKGIILVYDITKK----------ETFDDLPKW 120
Query: 611 LRFI 614
++ I
Sbjct: 121 MKMI 124
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 18/90 (20%)
Query: 478 IDLLKDMPLTEPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAV 537
+ +LK M E + R+ G + AGKTT I + F+ + I +P
Sbjct: 4 LTILKKMKQKE-RELRLLMLGLDNAGKTT----ILKKFNGEDIDTI-------SPT---- 47
Query: 538 RPVGMKIKTLKDEDTRISIWNLAGQHEFYS 567
+G IKTL+ +++IW++ GQ S
Sbjct: 48 --LGFNIKTLEHRGFKLNIWDVGGQKSLRS 75
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 478 IDLLKDMPLTEPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAV 537
+ +L+ + + R+ G + AGKTTL + +S + +I P +
Sbjct: 3 LSILRKLKSAPDQEVRILLLGLDNAGKTTLL----KQLASEDISHI-------TPTQ--- 48
Query: 538 RPVGMKIKTLKDEDTRISIWNLAGQHEF 565
G IK+++ + ++++W++ GQ +
Sbjct: 49 ---GFNIKSVQSQGFKLNVWDIGGQRKI 73
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 478 IDLLKDMPLTEPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAV 537
+ +L+ + + R+ G + AGKTTL + +S + +I P +
Sbjct: 4 LSILRKLKSAPDQEVRILLLGLDNAGKTTLL----KQLASEDISHI-------TPTQ--- 49
Query: 538 RPVGMKIKTLKDEDTRISIWNLAGQHEF 565
G IK+++ + ++++W++ GQ +
Sbjct: 50 ---GFNIKSVQSQGFKLNVWDIGGQRKI 74
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 17/79 (21%)
Query: 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKD 549
K R+ G + AGKTT+ + S + +P VG ++T+
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPT-----------------VGFNVETVTY 363
Query: 550 EDTRISIWNLAGQHEFYSL 568
++ + ++W++ GQ + L
Sbjct: 364 KNVKFNVWDVGGQDKIRPL 382
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 1121 GGIAKEIQGLRYYEHRLLIELHRKVNYMANFNVQLEERKVPNMIYFV-----RTENYSRK 1175
G I +EIQ L+ + H +I+L++ ++ ++ + +E + ++ E SR+
Sbjct: 61 GKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRR 120
Query: 1176 LITNIISGMTALRLHMLC--EFRREMHVVEDQMGCEI 1210
L I+SG+ HM+ + + E +++ M +I
Sbjct: 121 LFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKI 157
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 540 VGMKIKTLKDEDTRI--SIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREP 597
+ KI+T++ + RI IW+ AGQ F ++ + G A +++ +
Sbjct: 43 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG---AMGIMLVYDI--------- 90
Query: 598 KTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPN 629
T E+ +++R W+R I ++ V++ +L N
Sbjct: 91 -TNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 30.0 bits (66), Expect = 9.2, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 540 VGMKIKTLKDEDTRI--SIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREP 597
+ KI+T++ + RI IW+ AGQ F ++ + G A +++ +
Sbjct: 41 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG---AMGIMLVYDI--------- 88
Query: 598 KTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPN 629
T E+ +++R W+R I ++ V++ +L N
Sbjct: 89 -TNEKSFDNIRNWIRNIEEHASADVEKMILGN 119
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKD 549
K R+ G + AGKTT+ R + V +G ++TL
Sbjct: 17 KELRILILGLDGAGKTTIL-----------------YRLQIGEVVTTKPTIGFNVETLSY 59
Query: 550 EDTRISIWNLAGQ 562
++ ++++W+L GQ
Sbjct: 60 KNLKLNVWDLGGQ 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,413,464
Number of Sequences: 62578
Number of extensions: 1399402
Number of successful extensions: 3381
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3329
Number of HSP's gapped (non-prelim): 51
length of query: 1363
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1252
effective length of database: 8,027,179
effective search space: 10050028108
effective search space used: 10050028108
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)