Query 000665
Match_columns 1363
No_of_seqs 591 out of 4601
Neff 7.6
Searched_HMMs 46136
Date Mon Apr 1 21:42:35 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00116 LRR_RI Leucine-rich re 99.9 7.4E-24 1.6E-28 248.5 32.5 312 79-455 3-319 (319)
2 KOG1909 Ran GTPase-activating 99.9 1.1E-23 2.3E-28 232.8 19.7 341 68-459 24-373 (382)
3 cd00116 LRR_RI Leucine-rich re 99.9 2.6E-22 5.6E-27 235.5 32.8 292 74-424 23-318 (319)
4 KOG1909 Ran GTPase-activating 99.9 1.9E-22 4.2E-27 222.8 20.3 329 87-467 15-352 (382)
5 KOG0092 GTPase Rab5/YPT51 and 99.8 6.6E-21 1.4E-25 195.0 13.3 160 490-691 4-164 (200)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 2.7E-20 5.8E-25 189.9 14.4 156 491-691 22-182 (221)
7 KOG0078 GTP-binding protein SE 99.8 2.4E-19 5.3E-24 187.4 14.5 156 490-691 11-171 (207)
8 KOG0084 GTPase Rab1/YPT1, smal 99.8 3.8E-19 8.2E-24 182.9 14.3 158 491-693 9-171 (205)
9 cd04121 Rab40 Rab40 subfamily. 99.8 2.2E-18 4.8E-23 186.1 16.0 155 490-691 5-164 (189)
10 cd04120 Rab12 Rab12 subfamily. 99.8 3.8E-18 8.2E-23 186.1 17.7 155 493-692 2-161 (202)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 4.8E-18 1E-22 182.6 16.0 160 490-691 4-177 (182)
12 cd04133 Rop_like Rop subfamily 99.8 5E-18 1.1E-22 181.3 15.9 158 492-691 2-170 (176)
13 cd04131 Rnd Rnd subfamily. Th 99.8 6.6E-18 1.4E-22 181.1 16.3 159 491-691 1-173 (178)
14 cd01874 Cdc42 Cdc42 subfamily. 99.8 1.3E-17 2.8E-22 178.5 17.6 162 491-691 1-172 (175)
15 KOG0095 GTPase Rab30, small G 99.8 3.9E-18 8.5E-23 165.2 11.8 154 492-691 8-166 (213)
16 KOG0098 GTPase Rab2, small G p 99.8 4.9E-18 1.1E-22 172.0 13.1 159 490-691 5-165 (216)
17 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 1E-17 2.2E-22 185.9 16.7 161 490-692 12-186 (232)
18 KOG4194 Membrane glycoprotein 99.8 6.4E-20 1.4E-24 212.2 -1.7 331 74-459 78-432 (873)
19 KOG0088 GTPase Rab21, small G 99.8 4.2E-18 9.1E-23 166.7 10.9 159 491-691 13-172 (218)
20 cd01875 RhoG RhoG subfamily. 99.7 1.5E-17 3.2E-22 180.6 16.4 162 491-691 3-174 (191)
21 cd04128 Spg1 Spg1p. Spg1p (se 99.7 2.4E-17 5.2E-22 177.4 17.4 159 492-693 1-165 (182)
22 KOG0444 Cytoskeletal regulator 99.7 1.3E-20 2.9E-25 217.8 -9.0 311 91-454 44-373 (1255)
23 PLN00113 leucine-rich repeat r 99.7 2.1E-18 4.5E-23 232.6 10.0 227 75-331 70-297 (968)
24 KOG0444 Cytoskeletal regulator 99.7 2.8E-20 6.2E-25 215.1 -7.2 294 73-424 77-373 (1255)
25 KOG0080 GTPase Rab18, small G 99.7 2E-17 4.4E-22 162.7 12.9 159 488-691 8-171 (209)
26 cd04127 Rab27A Rab27a subfamil 99.7 3.7E-17 7.9E-22 175.5 16.2 156 491-691 4-174 (180)
27 KOG0087 GTPase Rab11/YPT3, sma 99.7 3.1E-17 6.7E-22 170.4 14.7 156 491-692 14-174 (222)
28 KOG0093 GTPase Rab3, small G p 99.7 3.2E-17 6.9E-22 159.0 13.7 157 491-693 21-182 (193)
29 PLN00113 leucine-rich repeat r 99.7 2.9E-18 6.3E-23 231.1 9.1 276 70-394 89-366 (968)
30 cd01871 Rac1_like Rac1-like su 99.7 4.9E-17 1.1E-21 173.8 16.5 161 492-691 2-172 (174)
31 KOG0079 GTP-binding protein H- 99.7 1.6E-17 3.5E-22 161.0 11.3 158 492-692 9-167 (198)
32 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 6.2E-17 1.3E-21 178.7 17.2 164 491-692 1-174 (222)
33 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 5.9E-17 1.3E-21 177.4 16.9 160 492-692 1-166 (201)
34 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 6.1E-17 1.3E-21 172.4 16.1 159 492-694 1-165 (170)
35 cd04122 Rab14 Rab14 subfamily. 99.7 7E-17 1.5E-21 171.1 16.0 154 492-691 3-161 (166)
36 cd04119 RJL RJL (RabJ-Like) su 99.7 8.2E-17 1.8E-21 170.1 16.0 159 492-691 1-164 (168)
37 cd01865 Rab3 Rab3 subfamily. 99.7 1E-16 2.3E-21 169.6 16.4 154 492-691 2-160 (165)
38 cd04109 Rab28 Rab28 subfamily. 99.7 1.1E-16 2.3E-21 177.2 16.8 159 492-693 1-165 (215)
39 cd04117 Rab15 Rab15 subfamily. 99.7 1E-16 2.2E-21 169.0 15.6 154 492-691 1-159 (161)
40 KOG4308 LRR-containing protein 99.7 5.3E-18 1.2E-22 205.5 6.6 364 76-474 89-462 (478)
41 KOG0086 GTPase Rab4, small G p 99.7 6.3E-17 1.4E-21 157.6 12.5 154 492-691 10-168 (214)
42 KOG0081 GTPase Rab27, small G 99.7 4.9E-18 1.1E-22 166.3 4.7 155 492-691 10-178 (219)
43 cd01867 Rab8_Rab10_Rab13_like 99.7 1.4E-16 3E-21 169.0 15.9 156 491-692 3-163 (167)
44 cd04134 Rho3 Rho3 subfamily. 99.7 2E-16 4.3E-21 171.5 17.2 162 493-692 2-172 (189)
45 cd01864 Rab19 Rab19 subfamily. 99.7 2.4E-16 5.1E-21 166.8 17.4 156 491-691 3-163 (165)
46 PF00071 Ras: Ras family; Int 99.7 7.4E-17 1.6E-21 169.9 13.5 154 493-692 1-159 (162)
47 cd04118 Rab24 Rab24 subfamily. 99.7 2.3E-16 5E-21 171.5 17.5 158 492-692 1-164 (193)
48 cd04102 RabL3 RabL3 (Rab-like3 99.7 2.7E-16 5.9E-21 171.2 18.0 159 492-682 1-178 (202)
49 cd04132 Rho4_like Rho4-like su 99.7 2.1E-16 4.6E-21 170.8 16.7 163 492-692 1-165 (187)
50 cd04106 Rab23_lke Rab23-like s 99.7 1.7E-16 3.7E-21 167.0 15.4 153 492-691 1-160 (162)
51 KOG4194 Membrane glycoprotein 99.7 8.3E-19 1.8E-23 203.1 -2.8 329 77-459 55-408 (873)
52 cd04110 Rab35 Rab35 subfamily. 99.7 2.1E-16 4.6E-21 172.8 16.2 154 491-691 6-164 (199)
53 KOG4308 LRR-containing protein 99.7 1.3E-17 2.8E-22 202.2 7.0 369 70-472 48-432 (478)
54 PLN03071 GTP-binding nuclear p 99.7 3.1E-16 6.6E-21 173.9 17.4 155 489-692 11-170 (219)
55 cd04126 Rab20 Rab20 subfamily. 99.7 3.3E-16 7.2E-21 172.8 17.0 162 492-694 1-190 (220)
56 cd04136 Rap_like Rap-like subf 99.7 2.3E-16 5.1E-21 166.0 14.9 158 492-691 2-160 (163)
57 smart00174 RHO Rho (Ras homolo 99.7 2.3E-16 5E-21 168.3 14.9 159 494-691 1-169 (174)
58 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 3.5E-16 7.6E-21 165.6 15.9 156 491-692 2-162 (166)
59 cd01866 Rab2 Rab2 subfamily. 99.7 4.4E-16 9.5E-21 165.4 16.2 155 491-691 4-163 (168)
60 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 4.6E-16 9.9E-21 166.0 16.4 158 492-691 3-161 (172)
61 cd04144 Ras2 Ras2 subfamily. 99.7 3.2E-16 6.8E-21 170.1 15.4 160 493-692 1-161 (190)
62 cd04113 Rab4 Rab4 subfamily. 99.7 3.8E-16 8.2E-21 164.4 15.3 154 492-691 1-159 (161)
63 cd04124 RabL2 RabL2 subfamily. 99.7 6.6E-16 1.4E-20 162.8 17.0 150 492-691 1-155 (161)
64 cd04125 RabA_like RabA-like su 99.7 6E-16 1.3E-20 167.6 16.9 156 492-693 1-161 (188)
65 cd00877 Ran Ran (Ras-related n 99.7 6.9E-16 1.5E-20 163.6 16.9 152 492-692 1-157 (166)
66 cd01868 Rab11_like Rab11-like. 99.7 5.8E-16 1.3E-20 163.6 15.9 155 491-691 3-162 (165)
67 cd04175 Rap1 Rap1 subgroup. T 99.7 5.1E-16 1.1E-20 164.0 15.1 158 492-691 2-160 (164)
68 cd04111 Rab39 Rab39 subfamily. 99.7 8.6E-16 1.9E-20 169.4 17.4 158 491-693 2-165 (211)
69 cd04149 Arf6 Arf6 subfamily. 99.7 2.6E-16 5.7E-21 167.2 12.8 157 490-690 8-166 (168)
70 cd04138 H_N_K_Ras_like H-Ras/N 99.7 7.5E-16 1.6E-20 161.7 15.8 157 492-691 2-159 (162)
71 cd04112 Rab26 Rab26 subfamily. 99.7 7.1E-16 1.5E-20 167.5 16.1 157 492-694 1-163 (191)
72 cd04140 ARHI_like ARHI subfami 99.7 7.5E-16 1.6E-20 163.0 15.7 160 492-691 2-162 (165)
73 PLN03110 Rab GTPase; Provision 99.7 8E-16 1.7E-20 170.3 16.5 159 491-695 12-175 (216)
74 PTZ00369 Ras-like protein; Pro 99.7 8.6E-16 1.9E-20 166.5 16.1 160 490-691 4-164 (189)
75 cd01860 Rab5_related Rab5-rela 99.7 9.1E-16 2E-20 161.6 15.7 155 492-692 2-161 (163)
76 smart00173 RAS Ras subfamily o 99.7 8E-16 1.7E-20 162.3 15.2 158 492-691 1-159 (164)
77 cd04101 RabL4 RabL4 (Rab-like4 99.7 9.5E-16 2.1E-20 161.8 15.7 154 492-692 1-162 (164)
78 cd04135 Tc10 TC10 subfamily. 99.7 1.5E-15 3.3E-20 161.9 17.1 163 492-692 1-172 (174)
79 cd04130 Wrch_1 Wrch-1 subfamil 99.7 1E-15 2.2E-20 163.4 15.6 161 492-690 1-170 (173)
80 cd01861 Rab6 Rab6 subfamily. 99.7 1.2E-15 2.5E-20 160.5 15.7 153 493-691 2-159 (161)
81 cd04116 Rab9 Rab9 subfamily. 99.7 2.8E-15 6.1E-20 159.3 18.2 160 490-691 4-168 (170)
82 cd01870 RhoA_like RhoA-like su 99.7 2.7E-15 5.8E-20 160.2 18.0 161 492-691 2-172 (175)
83 KOG0394 Ras-related GTPase [Ge 99.7 1.5E-15 3.4E-20 153.8 14.7 161 489-691 7-175 (210)
84 PLN03118 Rab family protein; P 99.6 2.2E-15 4.8E-20 166.3 17.2 161 489-693 12-176 (211)
85 cd01893 Miro1 Miro1 subfamily. 99.6 2.4E-15 5.2E-20 159.4 16.8 161 492-692 1-162 (166)
86 KOG0091 GTPase Rab39, small G 99.6 1E-15 2.2E-20 151.2 12.4 158 492-693 9-172 (213)
87 smart00177 ARF ARF-like small 99.6 1.3E-15 2.9E-20 162.9 14.4 159 491-692 13-172 (175)
88 cd04145 M_R_Ras_like M-Ras/R-R 99.6 1.9E-15 4.1E-20 159.3 15.3 159 491-691 2-161 (164)
89 cd04176 Rap2 Rap2 subgroup. T 99.6 1.9E-15 4.1E-20 159.4 14.9 158 492-691 2-160 (163)
90 smart00176 RAN Ran (Ras-relate 99.6 2.5E-15 5.4E-20 163.8 16.2 148 497-693 1-153 (200)
91 cd04150 Arf1_5_like Arf1-Arf5- 99.6 3.1E-15 6.8E-20 157.4 16.3 156 492-690 1-157 (159)
92 smart00175 RAB Rab subfamily o 99.6 3.3E-15 7.1E-20 157.4 15.8 155 492-692 1-160 (164)
93 cd04129 Rho2 Rho2 subfamily. 99.6 4.4E-15 9.6E-20 160.7 17.0 165 491-693 1-172 (187)
94 cd01892 Miro2 Miro2 subfamily. 99.6 3.4E-15 7.3E-20 158.9 15.8 160 490-692 3-164 (169)
95 cd04154 Arl2 Arl2 subfamily. 99.6 3E-15 6.6E-20 159.8 15.3 157 490-690 13-171 (173)
96 cd04123 Rab21 Rab21 subfamily. 99.6 3.7E-15 8.1E-20 156.4 15.7 158 492-691 1-159 (162)
97 KOG0083 GTPase Rab26/Rab37, sm 99.6 2.7E-16 5.7E-21 149.8 6.2 164 495-703 1-169 (192)
98 cd01873 RhoBTB RhoBTB subfamil 99.6 3.5E-15 7.6E-20 162.2 15.9 160 491-691 2-193 (195)
99 cd04115 Rab33B_Rab33A Rab33B/R 99.6 4.3E-15 9.3E-20 158.1 15.9 156 491-691 2-166 (170)
100 cd04143 Rhes_like Rhes_like su 99.6 3.4E-15 7.3E-20 168.1 15.6 164 492-691 1-168 (247)
101 cd00157 Rho Rho (Ras homology) 99.6 4.6E-15 1E-19 157.5 15.9 162 492-691 1-170 (171)
102 PLN03108 Rab family protein; P 99.6 4.5E-15 9.7E-20 163.7 15.9 155 491-691 6-165 (210)
103 cd01862 Rab7 Rab7 subfamily. 99.6 8.4E-15 1.8E-19 155.7 17.1 160 492-692 1-165 (172)
104 PTZ00133 ADP-ribosylation fact 99.6 4.8E-15 1E-19 159.7 14.7 157 491-691 17-175 (182)
105 cd04114 Rab30 Rab30 subfamily. 99.6 1.1E-14 2.4E-19 154.4 16.9 155 491-691 7-166 (169)
106 PLN00223 ADP-ribosylation fact 99.6 4.9E-15 1.1E-19 159.4 14.1 156 491-692 17-176 (181)
107 COG5238 RNA1 Ran GTPase-activa 99.6 4E-15 8.6E-20 159.2 13.1 278 151-459 23-319 (388)
108 cd04158 ARD1 ARD1 subfamily. 99.6 1.4E-14 3.1E-19 154.0 17.3 157 493-691 1-158 (169)
109 cd04177 RSR1 RSR1 subgroup. R 99.6 1.9E-14 4.1E-19 152.8 17.3 159 492-691 2-161 (168)
110 cd04142 RRP22 RRP22 subfamily. 99.6 2.1E-14 4.6E-19 156.6 17.6 162 492-691 1-171 (198)
111 cd04151 Arl1 Arl1 subfamily. 99.6 1.3E-14 2.9E-19 152.3 15.4 157 493-691 1-157 (158)
112 KOG0393 Ras-related small GTPa 99.6 2.9E-15 6.4E-20 158.0 10.0 162 490-690 3-175 (198)
113 cd01863 Rab18 Rab18 subfamily. 99.6 1.9E-14 4.2E-19 151.3 15.9 154 492-691 1-159 (161)
114 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 9.9E-15 2.2E-19 154.5 12.5 154 494-690 2-162 (164)
115 cd00154 Rab Rab family. Rab G 99.6 3.6E-14 7.9E-19 147.7 16.4 153 492-690 1-158 (159)
116 PLN00023 GTP-binding protein; 99.6 2.1E-14 4.5E-19 163.3 15.6 127 489-641 19-165 (334)
117 cd04157 Arl6 Arl6 subfamily. 99.6 3.2E-14 7E-19 149.6 16.0 158 493-690 1-160 (162)
118 cd00876 Ras Ras family. The R 99.6 2.7E-14 6E-19 149.4 15.3 157 493-691 1-158 (160)
119 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 4.6E-14 9.9E-19 152.2 17.2 159 491-692 3-168 (183)
120 cd04103 Centaurin_gamma Centau 99.6 3.7E-14 8.1E-19 149.1 15.8 151 492-691 1-156 (158)
121 KOG0472 Leucine-rich repeat pr 99.6 9.1E-17 2E-21 179.6 -4.4 99 346-459 427-544 (565)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.6 4.4E-14 9.6E-19 148.1 16.1 157 493-691 1-157 (158)
123 cd04139 RalA_RalB RalA/RalB su 99.5 6.8E-14 1.5E-18 147.2 15.9 159 492-692 1-160 (164)
124 KOG0097 GTPase Rab14, small G 99.5 3.8E-14 8.2E-19 136.3 11.8 152 492-686 12-165 (215)
125 cd04161 Arl2l1_Arl13_like Arl2 99.5 5.1E-14 1.1E-18 149.5 13.8 158 493-690 1-165 (167)
126 cd04146 RERG_RasL11_like RERG/ 99.5 4.7E-14 1E-18 149.2 13.1 159 493-692 1-162 (165)
127 PF08477 Miro: Miro-like prote 99.5 2.7E-14 5.8E-19 142.4 10.3 117 493-638 1-119 (119)
128 cd04160 Arfrp1 Arfrp1 subfamil 99.5 9.7E-14 2.1E-18 146.9 15.2 164 493-690 1-165 (167)
129 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 1.1E-13 2.5E-18 147.9 15.5 158 491-691 15-173 (174)
130 KOG0618 Serine/threonine phosp 99.5 1.1E-15 2.4E-20 186.7 -0.0 227 186-455 241-488 (1081)
131 cd04147 Ras_dva Ras-dva subfam 99.5 1.8E-13 3.9E-18 149.6 17.0 159 493-692 1-161 (198)
132 cd04156 ARLTS1 ARLTS1 subfamil 99.5 1.1E-13 2.4E-18 145.3 14.6 156 493-690 1-158 (160)
133 COG5238 RNA1 Ran GTPase-activa 99.5 3.2E-13 6.8E-18 144.8 17.5 244 73-361 29-279 (388)
134 cd04148 RGK RGK subfamily. Th 99.5 1.9E-13 4E-18 151.9 16.0 160 492-693 1-162 (221)
135 cd04159 Arl10_like Arl10-like 99.5 1.3E-13 2.8E-18 143.7 13.0 156 494-691 2-158 (159)
136 PTZ00132 GTP-binding nuclear p 99.5 4.3E-13 9.4E-18 148.5 17.4 154 489-691 7-165 (215)
137 smart00178 SAR Sar1p-like memb 99.5 4.6E-13 1E-17 144.6 16.7 157 491-691 17-182 (184)
138 cd04137 RheB Rheb (Ras Homolog 99.5 3.1E-13 6.8E-18 145.1 15.2 161 492-694 2-163 (180)
139 KOG0395 Ras-related GTPase [Ge 99.5 2.3E-13 5E-18 147.3 13.3 161 491-693 3-164 (196)
140 cd00879 Sar1 Sar1 subfamily. 99.5 8.7E-13 1.9E-17 143.0 16.4 165 490-691 18-188 (190)
141 PF00025 Arf: ADP-ribosylation 99.5 1.6E-12 3.4E-17 139.2 16.9 160 489-692 12-174 (175)
142 cd04155 Arl3 Arl3 subfamily. 99.4 1.3E-12 2.8E-17 139.2 16.2 159 491-691 14-172 (173)
143 KOG4252 GTP-binding protein [S 99.4 6.5E-14 1.4E-18 140.4 5.6 159 488-693 17-180 (246)
144 KOG0618 Serine/threonine phosp 99.4 1.2E-14 2.5E-19 177.9 -3.0 88 237-334 239-326 (1081)
145 COG1100 GTPase SAR1 and relate 99.4 3.4E-12 7.4E-17 141.6 16.9 166 492-693 6-184 (219)
146 KOG0075 GTP-binding ADP-ribosy 99.4 6.9E-13 1.5E-17 129.3 9.4 163 491-695 20-183 (186)
147 cd01890 LepA LepA subfamily. 99.4 1.7E-12 3.6E-17 139.2 13.6 164 493-691 2-174 (179)
148 cd04171 SelB SelB subfamily. 99.4 5.7E-12 1.2E-16 132.6 15.9 161 493-691 2-163 (164)
149 TIGR00231 small_GTP small GTP- 99.4 5.3E-12 1.2E-16 130.8 15.0 154 492-690 2-160 (161)
150 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 1.4E-11 3E-16 130.4 15.5 160 493-693 2-165 (168)
151 KOG0073 GTP-binding ADP-ribosy 99.3 1.4E-11 3.1E-16 123.1 14.2 160 491-691 16-175 (185)
152 cd01897 NOG NOG1 is a nucleola 99.3 1.2E-11 2.5E-16 131.1 14.4 157 493-691 2-165 (168)
153 KOG0070 GTP-binding ADP-ribosy 99.3 3E-12 6.6E-17 131.8 8.7 162 490-693 16-177 (181)
154 PTZ00099 rab6; Provisional 99.3 1.2E-11 2.6E-16 132.3 13.5 126 538-692 11-140 (176)
155 PRK15387 E3 ubiquitin-protein 99.3 2.1E-12 4.5E-17 163.8 7.7 238 103-458 223-460 (788)
156 PRK15387 E3 ubiquitin-protein 99.3 4.1E-12 8.8E-17 161.2 8.6 247 91-459 192-438 (788)
157 cd01891 TypA_BipA TypA (tyrosi 99.3 4.5E-11 9.8E-16 130.2 14.8 161 493-687 4-175 (194)
158 TIGR02528 EutP ethanolamine ut 99.3 1.7E-11 3.7E-16 126.2 10.9 135 493-690 2-141 (142)
159 KOG0071 GTP-binding ADP-ribosy 99.3 7.5E-11 1.6E-15 114.4 14.3 118 490-643 16-134 (180)
160 KOG0472 Leucine-rich repeat pr 99.3 1.6E-14 3.4E-19 161.9 -13.3 266 103-457 46-311 (565)
161 cd01898 Obg Obg subfamily. Th 99.3 6.5E-11 1.4E-15 125.5 14.7 162 493-691 2-168 (170)
162 KOG1673 Ras GTPases [General f 99.2 4.5E-11 9.8E-16 117.7 11.1 159 490-691 19-183 (205)
163 PRK03003 GTP-binding protein D 99.2 1.5E-10 3.3E-15 142.9 18.4 170 491-703 211-391 (472)
164 PRK00454 engB GTP-binding prot 99.2 1.2E-10 2.6E-15 126.7 15.1 160 490-693 23-193 (196)
165 KOG4341 F-box protein containi 99.2 2.8E-11 6E-16 137.6 9.7 357 39-454 63-437 (483)
166 PRK15494 era GTPase Era; Provi 99.2 9.9E-11 2.1E-15 138.1 14.3 155 490-691 51-213 (339)
167 cd01879 FeoB Ferrous iron tran 99.2 2.5E-10 5.4E-15 119.3 14.6 148 496-692 1-155 (158)
168 PLN03210 Resistant to P. syrin 99.2 1.2E-11 2.6E-16 168.2 5.8 126 290-454 778-904 (1153)
169 PRK04213 GTP-binding protein; 99.2 2.6E-10 5.6E-15 124.9 15.2 163 491-692 9-190 (201)
170 cd01889 SelB_euk SelB subfamil 99.2 2E-10 4.4E-15 124.9 13.8 169 492-691 1-183 (192)
171 PRK15370 E3 ubiquitin-protein 99.2 3.2E-11 6.9E-16 154.1 8.0 251 103-457 179-429 (754)
172 cd01878 HflX HflX subfamily. 99.2 2.6E-10 5.5E-15 125.3 13.8 151 491-691 41-202 (204)
173 cd00882 Ras_like_GTPase Ras-li 99.2 5.4E-10 1.2E-14 114.4 15.1 149 496-690 1-156 (157)
174 TIGR03594 GTPase_EngA ribosome 99.2 7.5E-10 1.6E-14 135.9 19.0 172 490-703 171-353 (429)
175 cd00881 GTP_translation_factor 99.2 4E-10 8.6E-15 121.5 14.7 171 493-691 1-184 (189)
176 PRK15370 E3 ubiquitin-protein 99.1 6.2E-11 1.3E-15 151.5 9.0 258 63-424 169-426 (754)
177 COG1160 Predicted GTPases [Gen 99.1 9.3E-10 2E-14 128.7 17.7 186 490-719 177-371 (444)
178 cd01894 EngA1 EngA1 subfamily. 99.1 2.3E-10 5.1E-15 119.2 11.2 146 496-691 2-155 (157)
179 TIGR03598 GTPase_YsxC ribosome 99.1 6.4E-10 1.4E-14 119.5 14.2 153 489-683 16-179 (179)
180 TIGR03156 GTP_HflX GTP-binding 99.1 7.7E-10 1.7E-14 130.7 15.0 149 492-691 190-349 (351)
181 PRK03003 GTP-binding protein D 99.1 4.6E-10 9.9E-15 138.7 13.6 150 492-691 39-196 (472)
182 cd01888 eIF2_gamma eIF2-gamma 99.1 1.8E-09 3.9E-14 118.5 16.5 114 552-691 83-196 (203)
183 TIGR01393 lepA GTP-binding pro 99.1 7.2E-10 1.6E-14 139.3 14.9 164 493-691 5-177 (595)
184 cd01876 YihA_EngB The YihA (En 99.1 1.4E-09 3.1E-14 114.4 14.0 154 493-691 1-168 (170)
185 KOG4341 F-box protein containi 99.1 3.1E-10 6.7E-15 129.3 9.3 314 74-449 138-458 (483)
186 TIGR00436 era GTP-binding prot 99.1 2E-09 4.4E-14 123.5 15.7 152 493-691 2-161 (270)
187 cd04164 trmE TrmE (MnmE, ThdF, 99.1 1.9E-09 4.1E-14 112.2 14.1 146 492-692 2-155 (157)
188 PRK05291 trmE tRNA modificatio 99.1 3.8E-09 8.3E-14 129.2 18.7 149 491-695 215-371 (449)
189 TIGR00487 IF-2 translation ini 99.0 1.6E-09 3.5E-14 135.4 15.6 155 492-690 88-246 (587)
190 cd01895 EngA2 EngA2 subfamily. 99.0 2.7E-09 5.8E-14 113.0 14.9 159 492-691 3-172 (174)
191 KOG2120 SCF ubiquitin ligase, 99.0 1.3E-09 2.8E-14 119.0 12.3 184 160-394 187-373 (419)
192 PRK15467 ethanolamine utilizat 99.0 6.6E-10 1.4E-14 116.9 9.9 141 493-695 3-148 (158)
193 PRK12299 obgE GTPase CgtA; Rev 99.0 1.6E-09 3.5E-14 126.9 14.2 163 492-693 159-327 (335)
194 cd01881 Obg_like The Obg-like 99.0 2.1E-09 4.5E-14 114.5 13.9 167 496-691 1-174 (176)
195 TIGR00450 mnmE_trmE_thdF tRNA 99.0 8.2E-09 1.8E-13 125.6 20.7 153 491-697 203-363 (442)
196 cd04105 SR_beta Signal recogni 99.0 2E-09 4.4E-14 118.0 13.7 122 493-643 2-125 (203)
197 TIGR02729 Obg_CgtA Obg family 99.0 2.8E-09 6E-14 125.0 15.6 164 492-691 158-326 (329)
198 cd04166 CysN_ATPS CysN_ATPS su 99.0 1.5E-09 3.2E-14 119.6 12.6 167 493-684 1-184 (208)
199 PRK00093 GTP-binding protein D 99.0 5.8E-09 1.3E-13 128.2 19.2 171 490-703 172-353 (435)
200 cd04163 Era Era subfamily. Er 99.0 4.3E-09 9.4E-14 110.3 15.0 156 491-691 3-166 (168)
201 KOG3883 Ras family small GTPas 99.0 2.9E-09 6.3E-14 105.0 12.0 160 489-691 7-172 (198)
202 PRK09518 bifunctional cytidyla 99.0 5.4E-09 1.2E-13 135.3 18.3 170 491-703 450-630 (712)
203 PRK00093 GTP-binding protein D 99.0 1.9E-09 4.2E-14 132.4 13.6 149 493-691 3-159 (435)
204 PLN03210 Resistant to P. syrin 99.0 5E-10 1.1E-14 152.5 8.9 182 97-303 553-738 (1153)
205 CHL00189 infB translation init 99.0 3E-09 6.5E-14 134.7 15.1 158 492-691 245-407 (742)
206 KOG0074 GTP-binding ADP-ribosy 99.0 1.1E-09 2.4E-14 106.5 8.1 157 489-687 15-172 (185)
207 cd04104 p47_IIGP_like p47 (47- 99.0 4.7E-09 1E-13 114.7 14.2 164 492-692 2-182 (197)
208 PF00009 GTP_EFTU: Elongation 99.0 5E-09 1.1E-13 113.6 13.3 172 491-691 3-184 (188)
209 KOG0072 GTP-binding ADP-ribosy 99.0 1.2E-09 2.6E-14 106.7 7.3 163 490-694 17-179 (182)
210 PRK05306 infB translation init 99.0 3.9E-09 8.4E-14 134.9 14.0 154 492-690 291-448 (787)
211 KOG3207 Beta-tubulin folding c 99.0 5.2E-11 1.1E-15 136.1 -2.7 214 81-332 100-315 (505)
212 PRK12296 obgE GTPase CgtA; Rev 98.9 7.3E-09 1.6E-13 125.8 15.1 173 492-695 160-341 (500)
213 TIGR00483 EF-1_alpha translati 98.9 6.4E-09 1.4E-13 127.2 14.7 178 489-686 5-199 (426)
214 PRK11058 GTPase HflX; Provisio 98.9 1E-08 2.2E-13 124.0 16.1 150 493-691 199-359 (426)
215 PRK12297 obgE GTPase CgtA; Rev 98.9 1.1E-08 2.4E-13 122.9 16.1 161 492-692 159-325 (424)
216 TIGR00475 selB selenocysteine- 98.9 9.6E-09 2.1E-13 129.3 16.1 160 493-691 2-163 (581)
217 TIGR03594 GTPase_EngA ribosome 98.9 6.4E-09 1.4E-13 127.7 14.3 149 493-691 1-157 (429)
218 cd00880 Era_like Era (E. coli 98.9 1.2E-08 2.6E-13 105.6 13.9 153 496-691 1-161 (163)
219 PRK00089 era GTPase Era; Revie 98.9 1.6E-08 3.4E-13 117.6 15.7 155 491-691 5-168 (292)
220 PRK05433 GTP-binding protein L 98.9 8E-09 1.7E-13 130.1 14.1 164 493-691 9-181 (600)
221 cd04167 Snu114p Snu114p subfam 98.9 1.1E-08 2.4E-13 113.1 13.6 123 493-640 2-136 (213)
222 TIGR00491 aIF-2 translation in 98.9 1.6E-08 3.5E-13 126.3 16.1 163 493-691 6-213 (590)
223 PRK12317 elongation factor 1-a 98.9 1.3E-08 2.8E-13 124.5 14.8 174 489-686 4-197 (425)
224 KOG2120 SCF ubiquitin ligase, 98.9 3.3E-09 7.1E-14 115.9 8.1 236 159-454 137-374 (419)
225 PRK09518 bifunctional cytidyla 98.9 1.3E-08 2.9E-13 131.7 14.4 147 491-691 275-433 (712)
226 cd04165 GTPBP1_like GTPBP1-lik 98.9 4.4E-08 9.5E-13 108.9 16.3 171 493-690 1-219 (224)
227 KOG0096 GTPase Ran/TC4/GSP1 (n 98.9 7.6E-09 1.7E-13 106.2 9.1 153 490-691 9-166 (216)
228 COG0218 Predicted GTPase [Gene 98.8 4.6E-08 9.9E-13 103.5 15.0 162 492-693 25-196 (200)
229 PF02421 FeoB_N: Ferrous iron 98.8 9.9E-09 2.2E-13 106.3 9.8 149 492-689 1-156 (156)
230 TIGR00437 feoB ferrous iron tr 98.8 1.7E-08 3.8E-13 127.1 13.6 146 498-692 1-153 (591)
231 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 4.3E-08 9.2E-13 108.5 14.7 164 493-691 1-170 (232)
232 PF10662 PduV-EutP: Ethanolami 98.8 2.9E-08 6.4E-13 100.5 12.1 136 493-690 3-142 (143)
233 KOG0076 GTP-binding ADP-ribosy 98.8 1.4E-08 3.1E-13 102.9 9.4 164 492-691 18-184 (197)
234 PRK09554 feoB ferrous iron tra 98.8 6.1E-08 1.3E-12 124.9 17.7 155 491-693 3-167 (772)
235 TIGR03680 eif2g_arch translati 98.8 3.2E-08 6.9E-13 120.0 13.9 174 490-691 3-193 (406)
236 PRK10218 GTP-binding protein; 98.8 6.4E-08 1.4E-12 121.4 15.9 156 492-681 6-172 (607)
237 PRK04000 translation initiatio 98.8 5.6E-08 1.2E-12 117.8 14.9 162 489-691 7-198 (411)
238 PRK10512 selenocysteinyl-tRNA- 98.8 8.3E-08 1.8E-12 121.2 16.7 156 493-691 2-163 (614)
239 PRK12298 obgE GTPase CgtA; Rev 98.8 9.9E-08 2.1E-12 114.2 16.6 168 492-693 160-332 (390)
240 KOG3207 Beta-tubulin folding c 98.8 1.5E-09 3.3E-14 124.3 1.0 165 107-334 98-262 (505)
241 cd01896 DRG The developmentall 98.7 1.5E-07 3.3E-12 105.4 15.9 81 492-590 1-89 (233)
242 KOG1707 Predicted Ras related/ 98.7 2.6E-08 5.7E-13 118.2 9.8 167 488-692 6-173 (625)
243 cd01883 EF1_alpha Eukaryotic e 98.7 8.1E-08 1.8E-12 106.7 13.0 174 494-683 2-194 (219)
244 cd04168 TetM_like Tet(M)-like 98.7 5.5E-08 1.2E-12 109.1 11.5 140 494-664 2-147 (237)
245 KOG4423 GTP-binding protein-li 98.7 2.9E-09 6.2E-14 108.6 0.8 164 492-691 26-191 (229)
246 COG2229 Predicted GTPase [Gene 98.7 2.4E-07 5.2E-12 95.8 14.4 163 491-689 10-173 (187)
247 PRK04004 translation initiatio 98.7 1.5E-07 3.2E-12 118.3 15.8 126 492-640 7-136 (586)
248 TIGR01394 TypA_BipA GTP-bindin 98.7 1E-07 2.2E-12 119.8 14.2 154 493-680 3-167 (594)
249 cd01884 EF_Tu EF-Tu subfamily. 98.7 5.3E-07 1.1E-11 98.1 16.9 165 491-683 2-172 (195)
250 KOG4242 Predicted myosin-I-bin 98.7 8.9E-09 1.9E-13 118.9 3.1 418 27-471 56-495 (553)
251 TIGR02034 CysN sulfate adenyly 98.7 1.1E-07 2.3E-12 115.4 12.5 170 492-686 1-189 (406)
252 COG0486 ThdF Predicted GTPase 98.6 6.7E-07 1.5E-11 105.4 17.8 154 491-696 217-378 (454)
253 cd01885 EF2 EF2 (for archaea a 98.6 1.8E-07 3.9E-12 103.6 12.2 123 493-640 2-138 (222)
254 PRK05124 cysN sulfate adenylyl 98.6 2.4E-07 5.2E-12 114.1 12.5 171 489-686 25-217 (474)
255 KOG4237 Extracellular matrix p 98.6 1.2E-08 2.6E-13 115.6 0.3 131 74-224 67-199 (498)
256 cd04169 RF3 RF3 subfamily. Pe 98.6 3.9E-07 8.4E-12 104.1 12.4 139 493-662 4-152 (267)
257 TIGR00485 EF-Tu translation el 98.6 1E-06 2.2E-11 106.7 16.8 164 489-680 10-179 (394)
258 COG1159 Era GTPase [General fu 98.6 7.1E-07 1.5E-11 99.6 13.9 159 491-691 6-169 (298)
259 KOG0617 Ras suppressor protein 98.5 8.4E-10 1.8E-14 111.4 -9.3 146 245-424 39-184 (264)
260 COG1160 Predicted GTPases [Gen 98.5 6.1E-07 1.3E-11 105.5 12.3 149 493-692 5-163 (444)
261 PLN00043 elongation factor 1-a 98.5 1.5E-06 3.2E-11 106.3 15.0 179 489-684 5-203 (447)
262 PRK12735 elongation factor Tu; 98.5 2.1E-06 4.5E-11 103.9 16.1 168 489-682 10-181 (396)
263 cd01886 EF-G Elongation factor 98.5 1.2E-06 2.7E-11 100.1 12.9 153 494-679 2-160 (270)
264 KOG1423 Ras-like GTPase ERA [C 98.4 4E-06 8.6E-11 92.7 15.2 178 489-705 70-276 (379)
265 KOG0617 Ras suppressor protein 98.4 2.3E-09 4.9E-14 108.4 -9.0 161 258-459 29-189 (264)
266 PRK05506 bifunctional sulfate 98.4 1.3E-06 2.8E-11 112.0 13.5 170 490-685 23-212 (632)
267 COG1084 Predicted GTPase [Gene 98.4 3E-06 6.5E-11 95.4 14.4 166 481-692 158-334 (346)
268 PRK12736 elongation factor Tu; 98.4 3.5E-06 7.5E-11 102.0 16.4 162 490-680 11-179 (394)
269 PRK13351 elongation factor G; 98.4 9.8E-07 2.1E-11 114.4 12.4 142 491-663 8-155 (687)
270 cd04170 EF-G_bact Elongation f 98.4 8.4E-07 1.8E-11 101.8 10.2 160 493-687 1-166 (268)
271 PRK13768 GTPase; Provisional 98.4 2.1E-06 4.5E-11 97.4 13.0 121 552-692 97-245 (253)
272 cd01850 CDC_Septin CDC/Septin. 98.4 3E-06 6.4E-11 97.3 14.3 64 491-561 4-72 (276)
273 cd01899 Ygr210 Ygr210 subfamil 98.4 2E-06 4.4E-11 100.1 12.8 86 494-590 1-111 (318)
274 KOG4237 Extracellular matrix p 98.4 4.3E-08 9.4E-13 111.1 -1.8 106 103-223 68-174 (498)
275 TIGR00503 prfC peptide chain r 98.3 1.9E-06 4.1E-11 107.2 11.7 152 491-674 11-171 (527)
276 KOG1259 Nischarin, modulator o 98.3 2.6E-07 5.6E-12 101.1 3.3 132 290-459 284-415 (490)
277 cd01852 AIG1 AIG1 (avrRpt2-ind 98.3 5.3E-06 1.1E-10 90.6 13.6 120 493-642 2-131 (196)
278 PF03029 ATP_bind_1: Conserved 98.3 1.6E-06 3.4E-11 97.2 9.5 124 553-692 92-235 (238)
279 PLN03126 Elongation factor Tu; 98.3 9.6E-06 2.1E-10 99.6 16.2 166 489-682 79-250 (478)
280 CHL00071 tufA elongation facto 98.3 1.2E-05 2.7E-10 97.7 16.8 166 489-682 10-181 (409)
281 PRK00741 prfC peptide chain re 98.3 4E-06 8.6E-11 104.3 12.4 143 491-662 10-160 (526)
282 PF14580 LRR_9: Leucine-rich r 98.3 2.6E-07 5.6E-12 97.9 1.4 118 247-394 5-123 (175)
283 KOG1259 Nischarin, modulator o 98.3 2.3E-07 4.9E-12 101.5 0.8 213 174-425 170-411 (490)
284 PRK00049 elongation factor Tu; 98.2 2E-05 4.4E-10 95.4 16.9 164 490-681 11-180 (396)
285 TIGR00484 EF-G translation elo 98.2 6.5E-06 1.4E-10 106.6 12.4 155 492-679 11-171 (689)
286 PF05783 DLIC: Dynein light in 98.2 1.6E-05 3.5E-10 96.7 14.6 168 492-691 26-261 (472)
287 cd01853 Toc34_like Toc34-like 98.2 2.8E-05 6E-10 87.8 15.1 161 489-678 29-209 (249)
288 PTZ00327 eukaryotic translatio 98.1 2.4E-05 5.3E-10 95.5 14.3 114 552-691 117-230 (460)
289 PTZ00141 elongation factor 1- 98.1 2.7E-05 5.8E-10 95.4 13.9 179 489-684 5-203 (446)
290 PRK14845 translation initiatio 98.1 2.8E-05 6.1E-10 102.2 14.7 66 553-641 527-592 (1049)
291 TIGR00991 3a0901s02IAP34 GTP-b 98.1 2.2E-05 4.8E-10 89.8 11.9 131 483-641 30-167 (313)
292 PF09439 SRPRB: Signal recogni 98.1 2.8E-05 6.1E-10 82.6 11.7 121 493-643 5-128 (181)
293 COG3596 Predicted GTPase [Gene 98.1 1.9E-05 4.2E-10 87.1 10.4 162 488-692 36-220 (296)
294 KOG1489 Predicted GTP-binding 98.0 4.1E-05 8.9E-10 85.5 12.8 163 492-691 197-364 (366)
295 KOG0077 Vesicle coat complex C 98.0 1.4E-05 3E-10 81.0 8.1 117 492-643 21-137 (193)
296 KOG1191 Mitochondrial GTPase [ 98.0 1E-05 2.3E-10 95.0 8.3 173 492-692 269-448 (531)
297 PRK09602 translation-associate 98.0 3.1E-05 6.8E-10 93.1 12.6 88 492-590 2-114 (396)
298 KOG3886 GTP-binding protein [S 98.0 1.5E-05 3.3E-10 84.8 8.4 116 492-642 5-131 (295)
299 KOG1532 GTPase XAB1, interacts 98.0 0.00025 5.4E-09 77.6 17.7 186 490-699 18-269 (366)
300 COG0370 FeoB Fe2+ transport sy 98.0 5.3E-05 1.2E-09 93.4 14.3 175 492-715 4-186 (653)
301 KOG0462 Elongation factor-type 98.0 4E-05 8.6E-10 90.9 12.6 169 493-703 62-237 (650)
302 PRK12740 elongation factor G; 98.0 3.2E-05 6.9E-10 100.3 13.2 120 497-641 1-126 (668)
303 PF01926 MMR_HSR1: 50S ribosom 98.0 3.9E-05 8.5E-10 76.1 10.9 106 493-636 1-116 (116)
304 COG5256 TEF1 Translation elong 98.0 4.1E-05 8.8E-10 88.9 12.2 180 489-684 5-201 (428)
305 COG4917 EutP Ethanolamine util 98.0 4.1E-05 8.9E-10 74.1 10.2 137 493-691 3-143 (148)
306 PLN03127 Elongation factor Tu; 98.0 9.9E-05 2.1E-09 90.4 16.4 129 489-641 59-191 (447)
307 PF14580 LRR_9: Leucine-rich r 98.0 1.9E-06 4.1E-11 91.4 1.1 106 260-390 40-146 (175)
308 PF04548 AIG1: AIG1 family; I 98.0 0.00011 2.5E-09 81.2 15.1 122 492-643 1-132 (212)
309 KOG3905 Dynein light intermedi 98.0 0.00019 4.2E-09 79.8 16.2 169 492-691 53-287 (473)
310 cd01882 BMS1 Bms1. Bms1 is an 98.0 0.00011 2.3E-09 82.2 14.4 147 490-682 38-184 (225)
311 COG2262 HflX GTPases [General 98.0 9.1E-05 2E-09 86.3 14.0 148 493-691 194-353 (411)
312 KOG2982 Uncharacterized conser 98.0 4.7E-06 1E-10 91.7 3.3 87 129-223 70-156 (418)
313 KOG0532 Leucine-rich repeat (L 97.9 3.3E-07 7.1E-12 108.4 -7.2 165 250-459 86-250 (722)
314 PRK09866 hypothetical protein; 97.9 0.00013 2.9E-09 89.5 14.3 120 551-691 229-350 (741)
315 PF05049 IIGP: Interferon-indu 97.9 0.00058 1.3E-08 80.5 19.0 173 490-704 34-233 (376)
316 KOG1947 Leucine rich repeat pr 97.8 0.00012 2.5E-09 91.2 13.8 245 157-457 187-441 (482)
317 PRK12739 elongation factor G; 97.8 9.4E-05 2E-09 95.9 12.8 156 491-679 8-169 (691)
318 KOG1947 Leucine rich repeat pr 97.8 0.00018 3.8E-09 89.5 14.2 144 166-339 171-317 (482)
319 COG4886 Leucine-rich repeat (L 97.8 1.3E-05 2.7E-10 97.5 3.3 156 159-337 141-296 (394)
320 COG4886 Leucine-rich repeat (L 97.8 1.3E-05 2.7E-10 97.5 3.2 194 134-371 97-292 (394)
321 KOG2982 Uncharacterized conser 97.7 1E-05 2.2E-10 89.1 1.7 85 132-223 47-131 (418)
322 cd00066 G-alpha G protein alph 97.7 0.0002 4.3E-09 84.2 11.6 163 515-692 130-309 (317)
323 TIGR00073 hypB hydrogenase acc 97.7 0.00035 7.6E-09 77.0 12.5 55 629-691 150-204 (207)
324 TIGR00490 aEF-2 translation el 97.7 7.8E-05 1.7E-09 96.9 8.3 94 492-590 20-121 (720)
325 PRK00007 elongation factor G; 97.7 0.00022 4.8E-09 92.5 12.4 155 492-679 11-171 (693)
326 TIGR02836 spore_IV_A stage IV 97.6 0.00041 8.9E-09 81.1 12.5 169 479-679 5-220 (492)
327 KOG0531 Protein phosphatase 1, 97.6 4E-06 8.6E-11 102.5 -4.6 158 261-458 161-320 (414)
328 KOG1859 Leucine-rich repeat pr 97.6 8.6E-06 1.9E-10 98.7 -2.2 143 291-471 165-308 (1096)
329 PRK09435 membrane ATPase/prote 97.6 0.001 2.2E-08 77.9 14.8 60 630-694 197-260 (332)
330 KOG1859 Leucine-rich repeat pr 97.6 2E-05 4.3E-10 95.7 0.6 158 263-456 165-322 (1096)
331 KOG0532 Leucine-rich repeat (L 97.6 3.7E-06 8.1E-11 99.7 -5.4 175 263-485 76-250 (722)
332 KOG4242 Predicted myosin-I-bin 97.5 5.1E-05 1.1E-09 88.6 3.5 365 81-476 89-472 (553)
333 COG0532 InfB Translation initi 97.5 0.00057 1.2E-08 82.3 12.2 152 493-691 7-167 (509)
334 KOG0090 Signal recognition par 97.5 0.0012 2.6E-08 70.3 12.9 123 493-644 40-162 (238)
335 COG5192 BMS1 GTP-binding prote 97.5 0.00065 1.4E-08 80.1 11.3 145 488-678 66-210 (1077)
336 smart00275 G_alpha G protein a 97.5 0.00066 1.4E-08 80.4 11.7 162 516-692 154-332 (342)
337 COG0481 LepA Membrane GTPase L 97.5 0.00041 8.8E-09 81.3 9.4 168 493-703 11-188 (603)
338 COG0536 Obg Predicted GTPase [ 97.4 0.0019 4.1E-08 73.6 14.2 169 493-695 161-334 (369)
339 smart00010 small_GTPase Small 97.4 0.00066 1.4E-08 67.6 9.4 89 492-640 1-90 (124)
340 PRK10463 hydrogenase nickel in 97.4 0.0011 2.3E-08 75.8 11.9 54 630-691 233-286 (290)
341 KOG1145 Mitochondrial translat 97.4 0.0017 3.6E-08 77.5 13.6 152 493-691 155-313 (683)
342 KOG0461 Selenocysteine-specifi 97.4 0.003 6.6E-08 71.1 14.6 170 489-693 5-192 (522)
343 TIGR00101 ureG urease accessor 97.4 0.0019 4.2E-08 70.6 12.8 53 631-691 141-193 (199)
344 COG2895 CysN GTPases - Sulfate 97.3 0.0016 3.5E-08 74.0 11.8 169 490-684 5-193 (431)
345 KOG0463 GTP-binding protein GP 97.3 0.00075 1.6E-08 76.3 8.5 173 490-689 132-353 (641)
346 TIGR00993 3a0901s04IAP86 chlor 97.3 0.0044 9.4E-08 76.8 15.7 121 490-641 117-250 (763)
347 KOG0531 Protein phosphatase 1, 97.3 2.8E-05 6.1E-10 95.0 -2.9 201 97-333 90-292 (414)
348 KOG3665 ZYG-1-like serine/thre 97.3 0.0011 2.3E-08 85.1 10.8 79 258-340 191-272 (699)
349 COG5257 GCD11 Translation init 97.2 0.0022 4.8E-08 71.9 11.0 175 489-693 8-201 (415)
350 KOG3665 ZYG-1-like serine/thre 97.2 0.0013 2.8E-08 84.5 10.7 63 261-332 147-209 (699)
351 PTZ00416 elongation factor 2; 97.2 0.0012 2.7E-08 87.1 10.7 146 492-662 20-184 (836)
352 TIGR00750 lao LAO/AO transport 97.2 0.007 1.5E-07 70.7 15.8 65 629-695 174-239 (300)
353 PLN00116 translation elongatio 97.2 0.002 4.3E-08 85.3 12.2 142 492-658 20-186 (843)
354 KOG0458 Elongation factor 1 al 97.1 0.0038 8.2E-08 75.5 12.3 180 490-684 176-372 (603)
355 TIGR00157 ribosome small subun 97.0 0.0023 5E-08 72.3 9.2 97 563-691 24-120 (245)
356 PRK07560 elongation factor EF- 96.9 0.0037 8.1E-08 81.8 11.3 124 492-640 21-152 (731)
357 smart00053 DYNc Dynamin, GTPas 96.9 0.0045 9.7E-08 69.4 10.1 22 493-514 28-49 (240)
358 COG0378 HypB Ni2+-binding GTPa 96.9 0.0052 1.1E-07 65.2 9.9 161 492-691 14-198 (202)
359 PF00350 Dynamin_N: Dynamin fa 96.9 0.0041 8.9E-08 65.8 9.2 66 550-637 99-168 (168)
360 COG1217 TypA Predicted membran 96.8 0.014 3.1E-07 68.6 13.5 127 493-644 7-137 (603)
361 KOG4579 Leucine-rich repeat (L 96.7 0.00034 7.5E-09 69.4 -0.2 107 291-424 28-134 (177)
362 KOG1143 Predicted translation 96.7 0.01 2.2E-07 67.6 11.0 130 490-642 166-318 (591)
363 KOG0448 Mitofusin 1 GTPase, in 96.7 0.0083 1.8E-07 73.7 10.9 162 491-677 109-309 (749)
364 COG3276 SelB Selenocysteine-sp 96.7 0.012 2.5E-07 69.6 11.4 154 493-691 2-159 (447)
365 PLN03150 hypothetical protein; 96.6 0.0022 4.9E-08 82.3 6.2 106 292-424 420-526 (623)
366 KOG1490 GTP-binding protein CR 96.6 0.0075 1.6E-07 71.5 9.3 167 483-687 160-334 (620)
367 KOG3735 Tropomodulin and leiom 96.6 0.0057 1.2E-07 69.5 7.9 123 72-194 196-321 (353)
368 PLN03150 hypothetical protein; 96.5 0.0024 5.2E-08 82.1 5.3 108 263-395 419-526 (623)
369 KOG1547 Septin CDC10 and relat 96.5 0.06 1.3E-06 58.3 14.6 166 450-664 19-216 (336)
370 PF00735 Septin: Septin; Inte 96.4 0.023 5E-07 65.5 12.0 65 491-561 4-72 (281)
371 COG1163 DRG Predicted GTPase [ 96.4 0.047 1E-06 62.1 13.8 48 629-693 241-288 (365)
372 KOG4579 Leucine-rich repeat (L 96.4 0.00091 2E-08 66.5 0.2 77 250-336 64-141 (177)
373 KOG3735 Tropomodulin and leiom 96.4 0.0044 9.5E-08 70.4 5.5 120 261-391 197-320 (353)
374 KOG0082 G-protein alpha subuni 96.3 0.029 6.4E-07 65.5 12.1 97 537-641 180-276 (354)
375 PF13855 LRR_8: Leucine rich r 96.3 0.00039 8.4E-09 60.5 -2.6 60 263-330 2-61 (61)
376 cd01857 HSR1_MMR1 HSR1/MMR1. 96.2 0.0064 1.4E-07 62.6 5.6 22 493-514 85-106 (141)
377 KOG1144 Translation initiation 96.2 0.019 4.1E-07 70.7 9.6 176 493-691 477-684 (1064)
378 PF12799 LRR_4: Leucine Rich r 96.1 0.0046 1E-07 50.0 3.1 37 291-332 2-38 (44)
379 PF03308 ArgK: ArgK protein; 96.0 0.045 9.7E-07 61.1 11.0 165 490-696 28-232 (266)
380 cd01859 MJ1464 MJ1464. This f 96.0 0.01 2.2E-07 62.2 5.6 23 492-514 102-124 (156)
381 COG0050 TufB GTPases - transla 96.0 0.09 1.9E-06 58.8 12.8 147 490-661 11-161 (394)
382 cd01855 YqeH YqeH. YqeH is an 95.9 0.029 6.3E-07 60.9 9.2 100 565-692 24-123 (190)
383 PF13855 LRR_8: Leucine rich r 95.9 0.0023 5E-08 55.6 0.2 16 316-331 23-38 (61)
384 KOG2123 Uncharacterized conser 95.9 0.0027 5.9E-08 70.0 0.7 103 75-192 20-123 (388)
385 TIGR03597 GTPase_YqeH ribosome 95.8 0.027 5.9E-07 67.4 9.1 101 562-692 50-151 (360)
386 KOG2123 Uncharacterized conser 95.7 0.0045 9.8E-08 68.3 1.7 104 101-219 18-123 (388)
387 PF12799 LRR_4: Leucine Rich r 95.6 0.011 2.3E-07 47.9 3.2 38 262-304 1-38 (44)
388 KOG4658 Apoptotic ATPase [Sign 95.6 0.004 8.6E-08 82.1 0.9 134 185-327 544-677 (889)
389 KOG1707 Predicted Ras related/ 95.6 0.085 1.8E-06 64.2 11.6 157 489-692 423-581 (625)
390 COG1703 ArgK Putative periplas 95.5 0.23 5E-06 56.4 13.8 64 631-697 193-257 (323)
391 KOG3887 Predicted small GTPase 95.4 0.11 2.4E-06 56.3 10.8 81 493-589 29-112 (347)
392 KOG1954 Endocytosis/signaling 95.4 0.56 1.2E-05 54.1 16.5 124 493-640 60-224 (532)
393 KOG0468 U5 snRNP-specific prot 95.3 0.037 8.1E-07 67.5 7.4 97 489-590 126-232 (971)
394 smart00368 LRR_RI Leucine rich 95.2 0.026 5.5E-07 40.9 3.6 22 319-340 3-24 (28)
395 cd04178 Nucleostemin_like Nucl 95.2 0.029 6.3E-07 59.9 5.6 24 491-514 117-140 (172)
396 cd01858 NGP_1 NGP-1. Autoanti 95.1 0.03 6.5E-07 58.7 5.5 24 491-514 102-125 (157)
397 PF00503 G-alpha: G-protein al 95.0 0.072 1.6E-06 64.7 9.2 147 537-692 220-388 (389)
398 cd01856 YlqF YlqF. Proteins o 95.0 0.037 8.1E-07 59.0 5.8 24 491-514 115-138 (171)
399 smart00368 LRR_RI Leucine rich 94.8 0.035 7.6E-07 40.2 3.4 26 158-183 2-27 (28)
400 cd01900 YchF YchF subfamily. 94.7 0.1 2.2E-06 59.8 8.5 108 495-617 2-139 (274)
401 COG0480 FusA Translation elong 94.5 0.15 3.2E-06 65.6 10.4 141 492-663 11-158 (697)
402 PRK09563 rbgA GTPase YlqF; Rev 94.5 0.057 1.2E-06 62.7 6.3 25 490-514 120-144 (287)
403 TIGR03596 GTPase_YlqF ribosome 94.5 0.061 1.3E-06 62.1 6.2 25 490-514 117-141 (276)
404 KOG2486 Predicted GTPase [Gene 94.3 0.051 1.1E-06 60.5 4.8 167 488-693 133-315 (320)
405 KOG4658 Apoptotic ATPase [Sign 94.2 0.04 8.8E-07 72.9 4.5 206 103-335 524-734 (889)
406 KOG1644 U2-associated snRNP A' 94.1 0.019 4.1E-07 61.1 1.0 103 264-394 21-123 (233)
407 cd01855 YqeH YqeH. YqeH is an 94.0 0.068 1.5E-06 57.9 5.2 23 492-514 128-150 (190)
408 COG5258 GTPBP1 GTPase [General 93.9 0.42 9.1E-06 55.4 11.2 26 489-514 115-140 (527)
409 PRK13695 putative NTPase; Prov 93.9 0.34 7.4E-06 51.7 10.2 23 492-514 1-23 (174)
410 PRK00098 GTPase RsgA; Reviewed 93.8 0.18 4E-06 58.8 8.5 89 570-690 75-163 (298)
411 COG1161 Predicted GTPases [Gen 93.7 0.086 1.9E-06 62.1 5.5 55 491-561 132-186 (322)
412 PRK09601 GTP-binding protein Y 93.7 0.22 4.8E-06 59.1 8.8 23 492-514 3-25 (364)
413 TIGR03348 VI_IcmF type VI secr 93.3 0.2 4.3E-06 69.1 8.9 126 494-640 114-256 (1169)
414 PTZ00258 GTP-binding protein; 93.2 0.25 5.5E-06 59.3 8.5 89 491-592 21-129 (390)
415 cd01851 GBP Guanylate-binding 93.2 1.6 3.6E-05 48.7 14.5 62 492-564 8-72 (224)
416 cd01859 MJ1464 MJ1464. This f 93.0 0.28 6E-06 51.3 7.6 53 629-693 43-95 (156)
417 PF09547 Spore_IV_A: Stage IV 92.9 1.4 3.1E-05 52.4 13.6 78 481-561 7-100 (492)
418 cd01858 NGP_1 NGP-1. Autoanti 92.9 0.37 8E-06 50.5 8.3 86 578-692 8-93 (157)
419 PF13516 LRR_6: Leucine Rich r 92.8 0.073 1.6E-06 36.9 1.9 22 318-339 2-23 (24)
420 COG5019 CDC3 Septin family pro 92.8 1.6 3.5E-05 51.1 13.6 62 491-561 23-91 (373)
421 PRK15386 type III secretion pr 92.7 0.062 1.4E-06 64.3 2.4 56 258-328 48-104 (426)
422 PRK13796 GTPase YqeH; Provisio 92.7 0.42 9.2E-06 57.4 9.5 88 578-691 69-156 (365)
423 PRK12289 GTPase RsgA; Reviewed 92.6 0.44 9.6E-06 56.7 9.4 84 578-691 89-172 (352)
424 KOG0410 Predicted GTP binding 92.6 0.43 9.2E-06 54.4 8.5 146 493-691 180-338 (410)
425 KOG3864 Uncharacterized conser 92.6 0.13 2.7E-06 55.2 4.1 82 320-421 103-184 (221)
426 KOG2655 Septin family protein 92.4 0.22 4.8E-06 58.4 6.2 63 491-561 21-88 (366)
427 PF13516 LRR_6: Leucine Rich r 92.1 0.094 2E-06 36.4 1.7 22 290-311 2-23 (24)
428 cd01854 YjeQ_engC YjeQ/EngC. 92.0 0.46 1E-05 55.2 8.4 89 569-691 72-161 (287)
429 PRK15386 type III secretion pr 92.0 0.13 2.8E-06 61.7 3.8 32 262-300 156-187 (426)
430 cd01849 YlqF_related_GTPase Yl 91.9 0.29 6.2E-06 51.2 5.9 24 491-514 100-123 (155)
431 TIGR00157 ribosome small subun 91.7 0.26 5.7E-06 55.8 5.7 22 493-514 122-143 (245)
432 KOG3929 Uncharacterized conser 91.7 0.25 5.4E-06 54.2 5.2 54 553-615 93-147 (363)
433 cd01849 YlqF_related_GTPase Yl 91.6 0.94 2E-05 47.3 9.4 52 629-691 31-82 (155)
434 KOG0460 Mitochondrial translat 91.6 2.3 4.9E-05 49.0 12.6 144 490-662 53-204 (449)
435 PRK12288 GTPase RsgA; Reviewed 91.5 0.25 5.4E-06 58.7 5.5 21 494-514 208-228 (347)
436 KOG3864 Uncharacterized conser 91.5 0.11 2.5E-06 55.5 2.3 71 262-339 101-173 (221)
437 PRK12289 GTPase RsgA; Reviewed 91.3 0.28 6.1E-06 58.4 5.7 21 494-514 175-195 (352)
438 KOG0705 GTPase-activating prot 91.3 0.45 9.8E-06 57.4 7.1 157 490-694 29-189 (749)
439 KOG0085 G protein subunit Galp 90.8 0.26 5.5E-06 53.2 4.2 23 490-512 38-60 (359)
440 COG4108 PrfC Peptide chain rel 90.5 0.94 2E-05 53.7 8.7 122 493-642 14-148 (528)
441 cd03114 ArgK-like The function 90.3 1.2 2.6E-05 46.3 8.7 21 494-514 2-22 (148)
442 PRK13796 GTPase YqeH; Provisio 90.1 0.45 9.8E-06 57.2 6.0 22 493-514 162-183 (365)
443 KOG1534 Putative transcription 89.9 1.3 2.9E-05 47.6 8.5 23 492-514 4-26 (273)
444 KOG1644 U2-associated snRNP A' 89.9 0.23 4.9E-06 53.2 2.8 77 293-394 22-98 (233)
445 KOG1486 GTP-binding protein DR 89.7 2.2 4.7E-05 47.1 10.0 120 490-640 61-187 (364)
446 TIGR03597 GTPase_YqeH ribosome 89.5 0.45 9.9E-06 57.1 5.4 23 492-514 155-177 (360)
447 cd01854 YjeQ_engC YjeQ/EngC. 89.2 0.59 1.3E-05 54.3 5.9 22 493-514 163-184 (287)
448 COG1618 Predicted nucleotide k 89.1 0.53 1.2E-05 48.8 4.7 66 490-572 4-71 (179)
449 PF13207 AAA_17: AAA domain; P 88.6 0.29 6.2E-06 48.6 2.4 22 493-514 1-22 (121)
450 PRK12288 GTPase RsgA; Reviewed 88.6 2.3 4.9E-05 50.7 10.3 86 578-691 120-205 (347)
451 PRK00098 GTPase RsgA; Reviewed 88.6 0.8 1.7E-05 53.5 6.5 22 493-514 166-187 (298)
452 KOG3859 Septins (P-loop GTPase 88.3 0.7 1.5E-05 51.4 5.2 58 491-561 42-104 (406)
453 PRK14722 flhF flagellar biosyn 88.3 1.3 2.7E-05 53.1 7.9 22 493-514 139-160 (374)
454 PRK10416 signal recognition pa 88.2 1.2 2.7E-05 52.3 7.7 23 492-514 115-137 (318)
455 PRK14737 gmk guanylate kinase; 88.1 0.82 1.8E-05 49.5 5.7 23 493-515 6-28 (186)
456 PF03193 DUF258: Protein of un 88.0 0.34 7.4E-06 50.8 2.6 22 493-514 37-58 (161)
457 cd01857 HSR1_MMR1 HSR1/MMR1. 87.9 0.94 2E-05 46.5 5.8 74 578-681 11-84 (141)
458 cd03112 CobW_like The function 87.6 1.9 4E-05 45.4 7.9 21 494-514 3-23 (158)
459 PRK08118 topology modulation p 87.6 0.37 8.1E-06 51.2 2.6 22 493-514 3-24 (167)
460 PF02492 cobW: CobW/HypB/UreG, 87.4 0.62 1.3E-05 50.0 4.2 20 494-513 3-22 (178)
461 TIGR00064 ftsY signal recognit 86.8 1.8 4E-05 49.7 7.9 23 492-514 73-95 (272)
462 PRK14974 cell division protein 86.7 0.98 2.1E-05 53.4 5.7 24 491-514 140-163 (336)
463 COG0563 Adk Adenylate kinase a 86.7 0.44 9.6E-06 51.1 2.6 23 492-514 1-23 (178)
464 PRK07261 topology modulation p 86.4 0.47 1E-05 50.6 2.6 22 493-514 2-23 (171)
465 cd03222 ABC_RNaseL_inhibitor T 86.2 2.8 6.1E-05 45.0 8.4 22 493-514 27-48 (177)
466 cd03115 SRP The signal recogni 86.0 2.9 6.2E-05 44.5 8.4 21 494-514 3-23 (173)
467 KOG0099 G protein subunit Galp 86.0 2.5 5.4E-05 46.8 7.8 36 538-573 188-224 (379)
468 TIGR01425 SRP54_euk signal rec 85.5 2.5 5.3E-05 51.6 8.3 24 491-514 100-123 (429)
469 PF03266 NTPase_1: NTPase; In 85.3 0.86 1.9E-05 48.5 4.0 23 493-515 1-23 (168)
470 COG4152 ABC-type uncharacteriz 85.3 2.3 5.1E-05 47.1 7.2 21 494-514 31-51 (300)
471 KOG2739 Leucine-rich acidic nu 85.3 0.26 5.6E-06 54.9 -0.1 15 290-304 91-105 (260)
472 PF13671 AAA_33: AAA domain; P 85.3 0.53 1.1E-05 48.1 2.3 21 494-514 2-22 (143)
473 KOG0467 Translation elongation 85.2 1.6 3.4E-05 55.1 6.5 121 493-639 11-136 (887)
474 cd03116 MobB Molybdenum is an 85.1 0.74 1.6E-05 48.5 3.3 22 493-514 3-24 (159)
475 cd01856 YlqF YlqF. Proteins o 84.8 3.4 7.4E-05 43.9 8.3 52 629-692 48-99 (171)
476 KOG0780 Signal recognition par 84.2 2.2 4.8E-05 50.0 6.7 25 490-514 100-124 (483)
477 PF03215 Rad17: Rad17 cell cyc 83.8 3.6 7.9E-05 51.6 9.0 22 493-514 47-68 (519)
478 KOG0447 Dynamin-like GTP bindi 83.8 7.6 0.00016 47.1 10.9 22 493-514 310-331 (980)
479 TIGR00092 GTP-binding protein 83.7 3.7 8.1E-05 49.0 8.6 90 492-592 3-111 (368)
480 KOG1533 Predicted GTPase [Gene 83.6 0.39 8.5E-06 52.4 0.4 37 551-590 96-138 (290)
481 smart00072 GuKc Guanylate kina 83.6 1.9 4.2E-05 46.4 5.8 22 494-515 5-26 (184)
482 cd00071 GMPK Guanosine monopho 83.6 2.1 4.6E-05 43.8 5.8 22 494-515 2-23 (137)
483 PRK10867 signal recognition pa 83.3 2.6 5.7E-05 51.5 7.4 24 491-514 100-123 (433)
484 KOG4273 Uncharacterized conser 83.2 2.8 6.1E-05 45.8 6.6 103 493-641 6-123 (418)
485 cd02019 NK Nucleoside/nucleoti 82.7 0.94 2E-05 40.4 2.5 22 494-515 2-23 (69)
486 COG1126 GlnQ ABC-type polar am 82.6 0.95 2.1E-05 49.3 2.8 32 482-513 19-50 (240)
487 COG2884 FtsE Predicted ATPase 82.6 0.96 2.1E-05 48.2 2.8 22 493-514 30-51 (223)
488 PF13521 AAA_28: AAA domain; P 82.5 0.76 1.6E-05 48.4 2.1 22 493-514 1-22 (163)
489 KOG1491 Predicted GTP-binding 82.5 1.1 2.5E-05 51.5 3.5 33 490-522 19-52 (391)
490 KOG2739 Leucine-rich acidic nu 82.0 0.62 1.3E-05 52.0 1.2 63 129-197 64-127 (260)
491 PF13238 AAA_18: AAA domain; P 82.0 0.88 1.9E-05 45.3 2.3 21 494-514 1-21 (129)
492 COG0194 Gmk Guanylate kinase [ 81.5 1.7 3.6E-05 46.4 4.1 23 493-515 6-28 (191)
493 PF13555 AAA_29: P-loop contai 81.3 1.2 2.6E-05 38.9 2.5 22 493-514 25-46 (62)
494 smart00382 AAA ATPases associa 81.2 1.1 2.4E-05 44.6 2.7 23 493-515 4-26 (148)
495 PF00004 AAA: ATPase family as 81.2 1.1 2.3E-05 44.9 2.6 21 494-514 1-21 (132)
496 PRK06217 hypothetical protein; 81.1 1.1 2.4E-05 48.3 2.8 23 492-514 2-24 (183)
497 PRK10751 molybdopterin-guanine 80.9 1.6 3.4E-05 46.6 3.7 22 493-514 8-29 (173)
498 PRK00771 signal recognition pa 80.6 2.7 5.9E-05 51.5 6.1 24 491-514 95-118 (437)
499 smart00367 LRR_CC Leucine-rich 80.0 1.5 3.3E-05 31.0 2.3 23 384-406 2-24 (26)
500 KOG0466 Translation initiation 79.9 4.1 8.9E-05 46.1 6.6 58 629-691 181-238 (466)
No 1
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.93 E-value=7.4e-24 Score=248.55 Aligned_cols=312 Identities=22% Similarity=0.281 Sum_probs=186.0
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCC--HHHHHHHHHHhcc
Q 000665 79 LEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIK--NAGASLLASALKV 156 (1363)
Q Consensus 79 L~Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~--~~g~~~L~~~L~~ 156 (1363)
|+|.++.++++.+..+...+ .+|++|+|+++.+++.+...++..+..++++++|+++.+.++ +.++..++..+..
T Consensus 3 l~L~~~~l~~~~~~~~~~~l---~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 3 LSLKGELLKTERATELLPKL---LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred cccccCcccccchHHHHHHH---hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 45555555544443222222 235666666666666665566655555555666666666555 4555555555555
Q ss_pred CCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcC
Q 000665 157 NDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLP 236 (1363)
Q Consensus 157 ~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~ 236 (1363)
+++|+.|+|++|.+.......+...... ++|+.|++++|.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~--------------------------------------- 119 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG--------------------------------------- 119 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc---------------------------------------
Confidence 5556666666666554444444333333 445555555554
Q ss_pred CCCcceeeccCchhHHHHHHHhcCC-CcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHh
Q 000665 237 ENGTLRIYRLDVSGSCRVACSLGCN-TTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLF 315 (1363)
Q Consensus 237 ~~~~L~~L~Ls~~g~~~L~~~L~~~-~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~ 315 (1363)
+++.+...+...+..+ ++|+.|+|++|.++..+...+...+..+++|++|+|++|.+++.+...++..+.
T Consensus 120 ---------~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~ 190 (319)
T cd00116 120 ---------LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK 190 (319)
T ss_pred ---------cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHH
Confidence 3334444455555555 666666666666666555556666666666666666666666666666666666
Q ss_pred cCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccc-cCcceEEEEecCC
Q 000665 316 KNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLT-TNETVTQLGIYDD 394 (1363)
Q Consensus 316 ~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~-~~~~L~~L~Ls~N 394 (1363)
.+++|++|+|++|.+++.++..+...+ ..+++|+.|+++ +|.+++.+...++..+. .+++|++|++++|
T Consensus 191 ~~~~L~~L~L~~n~i~~~~~~~l~~~~--------~~~~~L~~L~ls--~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 191 ANCNLEVLDLNNNGLTDEGASALAETL--------ASLKSLEVLNLG--DNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred hCCCCCEEeccCCccChHHHHHHHHHh--------cccCCCCEEecC--CCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 666666666666666666666655544 345666666666 45666666655555442 2456777777776
Q ss_pred CCCCHHHHHHHHHHHhhCCCccEEEeecCCCCCChhHHHHHHHHHhcC-CCccEEeccCCCC
Q 000665 395 QSLRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVN-PWIEDIDLERTPL 455 (1363)
Q Consensus 395 ~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n-~~L~~LdL~~N~l 455 (1363)
.+++.+...++..+..+++|+.|++++|. +++.+...++..+..+ +.|+.|++.+|++
T Consensus 261 -~i~~~~~~~l~~~~~~~~~L~~l~l~~N~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 261 -DITDDGAKDLAEVLAEKESLLELDLRGNK--FGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred -CCCcHHHHHHHHHHhcCCCccEEECCCCC--CcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 57666666666666666777777777775 5666667777777666 6677777777764
No 2
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-23 Score=232.76 Aligned_cols=341 Identities=14% Similarity=0.202 Sum_probs=260.6
Q ss_pred HhhhhCCCccEEEEecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCC------HHHHHHHHHHhHcCCCccEEEeecCC
Q 000665 68 TAEKAHTSLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFD------AECLAEISDVVRRNGVIKEVMFTESG 141 (1363)
Q Consensus 68 ~~l~~~~~L~~L~Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~------~~~~~~l~~~L~~~~~L~~L~Ls~n~ 141 (1363)
+.+....+++.|+|++|.++.+..+.+++.|.+.+.|+..++|+--.+ ...+..++.+|..|+.|++|+||.|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344555788999999999999999999999999999999999865322 13466778888888899999999999
Q ss_pred CCHHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEcc
Q 000665 142 IKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWS 221 (1363)
Q Consensus 142 I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls 221 (1363)
+++.|...+...+.++.+|++|.|.+|.++..|...|+.+|..+. .+. .....+.|++++.+
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~k----------k~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNK----------KAASKPKLRVFICG 165 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHh----------ccCCCcceEEEEee
Confidence 999999999999999999999999999999999988887654421 010 11123456666666
Q ss_pred CCCCcchhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCC
Q 000665 222 GENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTC 301 (1363)
Q Consensus 222 ~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~ 301 (1363)
.| .+.+.|...++..+...++|+.+.++.|.|...|+..++.++..|++|+.|||.+|-
T Consensus 166 rN---------------------rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 166 RN---------------------RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred cc---------------------ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 66 466677788888888778888888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccc
Q 000665 302 LKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLT 381 (1363)
Q Consensus 302 L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~ 381 (1363)
++..|..+++..+...++|+.|+++++.+.+.|+.++.++++ ..+++|++|.|. .|.|+..+...++..+.
T Consensus 225 ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~-------~~~p~L~vl~l~--gNeIt~da~~~la~~~~ 295 (382)
T KOG1909|consen 225 FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK-------ESAPSLEVLELA--GNEITRDAALALAACMA 295 (382)
T ss_pred hhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh-------ccCCCCceeccC--cchhHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888775 457788888887 57888888888887777
Q ss_pred cCcceEEEEecCCCCC--CHHHHHHHHHHHhh-CCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCCC
Q 000665 382 TNETVTQLGIYDDQSL--RPDDFVRIFKSLQK-NASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNS 458 (1363)
Q Consensus 382 ~~~~L~~L~Ls~N~~i--~~~gl~~L~~~L~~-~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~~ 458 (1363)
..+.|..|+|++| .+ +++++..+...+.. -..+...+.+.+. +.+.+............+-+.++..++-+.+.
T Consensus 296 ek~dL~kLnLngN-~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~--l~~eg~e~e~~~~~~~~t~~e~~ed~e~ie~e 372 (382)
T KOG1909|consen 296 EKPDLEKLNLNGN-RLGEKDEGIDEIASKFDTAHVLLEDIDDSEEE--LEREGEEDEEEEVEKKETFKELNEDGEVIEEE 372 (382)
T ss_pred cchhhHHhcCCcc-cccccchhHHHHHHhcccccccchhhchhHHH--HHhhhhhHHHHHHHhcCcchhhcccccccchh
Confidence 7778888888888 67 66777777766633 2233344444454 45556666666666666666677777776665
Q ss_pred C
Q 000665 459 G 459 (1363)
Q Consensus 459 g 459 (1363)
+
T Consensus 373 ~ 373 (382)
T KOG1909|consen 373 G 373 (382)
T ss_pred H
Confidence 5
No 3
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.91 E-value=2.6e-22 Score=235.45 Aligned_cols=292 Identities=20% Similarity=0.277 Sum_probs=241.8
Q ss_pred CCccEEEEecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCC--HHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHH
Q 000665 74 TSLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFD--AECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLA 151 (1363)
Q Consensus 74 ~~L~~L~Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~--~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~ 151 (1363)
..++.|+++++.+++.++..++..+...++++.|+++++.++ ..++..++..+..+++|++|+|++|.+.......+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 348999999999999999999999999999999999999998 677888888888899999999999999876666666
Q ss_pred HHhccCCCccEEEccCCCCChhhHHHHHHHHhcC-CCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhH
Q 000665 152 SALKVNDTLEELQIWEDSIGSKGAEELSKMIEAN-STLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSK 230 (1363)
Q Consensus 152 ~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~-~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~ 230 (1363)
..... ++|++|++++|.+++.+...+...+..+ ++|+.|++++|.+
T Consensus 103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-------------------------------- 149 (319)
T cd00116 103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL-------------------------------- 149 (319)
T ss_pred HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC--------------------------------
Confidence 55555 7899999999999998988888888887 8899999988863
Q ss_pred HHhhcCCCCcceeeccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 000665 231 VVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYV 310 (1363)
Q Consensus 231 l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L 310 (1363)
+..+...++..+..+++|+.|+|++|.+++.+...++..+..+++|++|+|++|.+++.+...+
T Consensus 150 ----------------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 213 (319)
T cd00116 150 ----------------EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL 213 (319)
T ss_pred ----------------CchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence 3334455566666677788888888888887877788777777888888888888888888888
Q ss_pred HHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEE
Q 000665 311 AAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLG 390 (1363)
Q Consensus 311 ~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~ 390 (1363)
+..+..+++|++|++++|.+++.++..++..+. ..+.+|+.|+++ +|.+++.+...+++.+..+++|++|+
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~-------~~~~~L~~L~l~--~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALL-------SPNISLLTLSLS--CNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred HHHhcccCCCCEEecCCCcCchHHHHHHHHHHh-------ccCCCceEEEcc--CCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 888888888888888888888888887777552 245788888887 57888888888888888778888888
Q ss_pred ecCCCCCCHHHHHHHHHHHhhC-CCccEEEeecCC
Q 000665 391 IYDDQSLRPDDFVRIFKSLQKN-ASLRQLSLQGCK 424 (1363)
Q Consensus 391 Ls~N~~i~~~gl~~L~~~L~~~-~~L~~L~Ls~N~ 424 (1363)
+++| .+++++...+++.+... +.|+.|++.+|.
T Consensus 285 l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 285 LRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 8888 78888888888888777 888888887764
No 4
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-22 Score=222.84 Aligned_cols=329 Identities=19% Similarity=0.247 Sum_probs=269.0
Q ss_pred CHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCC------HHHHHHHHHHhccCCCc
Q 000665 87 EIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIK------NAGASLLASALKVNDTL 160 (1363)
Q Consensus 87 ~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~------~~g~~~L~~~L~~~~sL 160 (1363)
+.+..+.+...+.....+++|+||+|.++...+..+++++...++|+..++|+--.+ +.....+..+|..++.|
T Consensus 15 t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 15 TEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred hHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence 445556677788888999999999999999999999999999999999999875433 44566778888888899
Q ss_pred cEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCC-ChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCC
Q 000665 161 EELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSL-TATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENG 239 (1363)
Q Consensus 161 ~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~-~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~ 239 (1363)
+.||||+|-|+..|+..|...+.++..|++|.|.+|.+. .+...+..++..+.
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~-------------------------- 148 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA-------------------------- 148 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------------------------
Confidence 999999999999999999999999999999999888632 12222222211100
Q ss_pred cceeeccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCC
Q 000665 240 TLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRS 319 (1363)
Q Consensus 240 ~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~ 319 (1363)
.......-+.|+.+..+.|.+.+.|+..++.++...++|+.+.++.|.|...|+..++.++..|++
T Consensus 149 --------------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~ 214 (382)
T KOG1909|consen 149 --------------VNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPH 214 (382)
T ss_pred --------------HHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCc
Confidence 112224457899999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccc-cCcceEEEEecCCCCCC
Q 000665 320 LESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLT-TNETVTQLGIYDDQSLR 398 (1363)
Q Consensus 320 L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~-~~~~L~~L~Ls~N~~i~ 398 (1363)
|+.|||..|-++..|...++++| +..+.|+.|+++ +|.+.+.|+.++.+++. .+++|+.|.+.+| .|+
T Consensus 215 LevLdl~DNtft~egs~~LakaL--------~s~~~L~El~l~--dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt 283 (382)
T KOG1909|consen 215 LEVLDLRDNTFTLEGSVALAKAL--------SSWPHLRELNLG--DCLLENEGAIAFVDALKESAPSLEVLELAGN-EIT 283 (382)
T ss_pred ceeeecccchhhhHHHHHHHHHh--------cccchheeeccc--ccccccccHHHHHHHHhccCCCCceeccCcc-hhH
Confidence 99999999999999999999988 455689999997 89999999999999884 5789999999999 799
Q ss_pred HHHHHHHHHHHhhCCCccEEEeecCCCCCChhHHHHHHHHHhc-CCCccEEeccCCCCCCCCchHHHHHH
Q 000665 399 PDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQV-NPWIEDIDLERTPLKNSGKADGIYQR 467 (1363)
Q Consensus 399 ~~gl~~L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~-n~~L~~LdL~~N~l~~~g~~~~i~~~ 467 (1363)
.++...++.++...+.|..|+|++|..--++.++..+...+.. -..+...+.+.+.+.+.| .....+.
T Consensus 284 ~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg-~e~e~~~ 352 (382)
T KOG1909|consen 284 RDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFDTAHVLLEDIDDSEEELEREG-EEDEEEE 352 (382)
T ss_pred HHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcccccccchhhchhHHHHHhhh-hhHHHHH
Confidence 9999999999988999999999999833377788888877743 234667777778888777 3444443
No 5
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6.6e-21 Score=194.99 Aligned_cols=160 Identities=18% Similarity=0.345 Sum_probs=122.1
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSL 568 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~t 568 (1363)
..+|++++|+.+||||||+.++..+ |.....||+|. .+-.......+..++|.|||+||||.||++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGa-------------aF~tktv~~~~~~ikfeIWDTAGQERy~sl 70 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGA-------------AFLTKTVTVDDNTIKFEIWDTAGQERYHSL 70 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCcccccccccccc-------------EEEEEEEEeCCcEEEEEEEEcCCccccccc
Confidence 4589999999999999999999988 65444454442 111122223356789999999999999999
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhH
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQ 648 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~ 648 (1363)
-+.|++ .+...|||||+++ .+++ ..+..|+..++.++++.+ .+.|||||+|+...+.+..+
T Consensus 71 apMYyR---gA~AAivvYDit~---------~~SF-~~aK~WvkeL~~~~~~~~------vialvGNK~DL~~~R~V~~~ 131 (200)
T KOG0092|consen 71 APMYYR---GANAAIVVYDITD---------EESF-EKAKNWVKELQRQASPNI------VIALVGNKADLLERREVEFE 131 (200)
T ss_pred ccceec---CCcEEEEEEeccc---------HHHH-HHHHHHHHHHHhhCCCCe------EEEEecchhhhhhcccccHH
Confidence 999999 8999999999985 3444 777999999999776533 46789999999876666666
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 649 LTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 649 ~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
++.+..+. . .-.+|++||+++.||+++|..|.+
T Consensus 132 ea~~yAe~-----~-----gll~~ETSAKTg~Nv~~if~~Ia~ 164 (200)
T KOG0092|consen 132 EAQAYAES-----Q-----GLLFFETSAKTGENVNEIFQAIAE 164 (200)
T ss_pred HHHHHHHh-----c-----CCEEEEEecccccCHHHHHHHHHH
Confidence 55433332 1 124689999999999999987765
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.7e-20 Score=189.92 Aligned_cols=156 Identities=19% Similarity=0.322 Sum_probs=120.0
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~y 565 (1363)
..|++|+|+.+||||||+.+++.+ |...|.+ |-||+... ..+..++|.+||+||||.|
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqA-----------------TIGiDFlskt~~l~d~~vrLQlWDTAGQERF 84 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQA-----------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 84 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccc-----------------eeeeEEEEEEEEEcCcEEEEEEEecccHHHH
Confidence 379999999999999999999988 6665555 55555443 3478999999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
.++-+.|++ ..++.|+|||++++ .++ +....||+.++.... +..+-|+|||||.|+...++.
T Consensus 85 rslipsY~R---ds~vaviVyDit~~------~Sf----e~t~kWi~dv~~e~g-----s~~viI~LVGnKtDL~dkrqv 146 (221)
T KOG0094|consen 85 RSLIPSYIR---DSSVAVIVYDITDR------NSF----ENTSKWIEDVRRERG-----SDDVIIFLVGNKTDLSDKRQV 146 (221)
T ss_pred hhhhhhhcc---CCeEEEEEEecccc------chH----HHHHHHHHHHHhccC-----CCceEEEEEcccccccchhhh
Confidence 999999999 89999999999962 233 455999999986321 113579999999999876655
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..++.....+++.. ..+.+|+++|.+|++||..|..
T Consensus 147 s~eEg~~kAkel~a----------~f~etsak~g~NVk~lFrrIaa 182 (221)
T KOG0094|consen 147 SIEEGERKAKELNA----------EFIETSAKAGENVKQLFRRIAA 182 (221)
T ss_pred hHHHHHHHHHHhCc----------EEEEecccCCCCHHHHHHHHHH
Confidence 54444322332222 2478999999999999987664
No 7
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.4e-19 Score=187.45 Aligned_cols=156 Identities=19% Similarity=0.367 Sum_probs=125.2
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~ 564 (1363)
..+|++++|+++||||+++.++.++ |..++. +|.||+.+ +.++..+.+.+||+|||+.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~-----------------sTiGIDFk~kti~l~g~~i~lQiWDtaGQer 73 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFI-----------------STIGIDFKIKTIELDGKKIKLQIWDTAGQER 73 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCcc-----------------ceEEEEEEEEEEEeCCeEEEEEEEEcccchh
Confidence 4589999999999999999999988 654433 46666644 3447899999999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|+.+-..|++ .+...+||||+++ ..++ +.+.+|++.|..+++..+ |++|||||+|+...+.
T Consensus 74 f~ti~~sYyr---gA~gi~LvyDitn---------e~Sf-eni~~W~~~I~e~a~~~v------~~~LvGNK~D~~~~R~ 134 (207)
T KOG0078|consen 74 FRTITTAYYR---GAMGILLVYDITN---------EKSF-ENIRNWIKNIDEHASDDV------VKILVGNKCDLEEKRQ 134 (207)
T ss_pred HHHHHHHHHh---hcCeeEEEEEccc---------hHHH-HHHHHHHHHHHhhCCCCC------cEEEeecccccccccc
Confidence 9999999999 8999999999985 2333 555779999999887654 8999999999976555
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+..++. +.+..+|+ -.++++||+++.+|++.|.+|..
T Consensus 135 V~~e~g----e~lA~e~G------~~F~EtSAk~~~NI~eaF~~La~ 171 (207)
T KOG0078|consen 135 VSKERG----EALAREYG------IKFFETSAKTNFNIEEAFLSLAR 171 (207)
T ss_pred ccHHHH----HHHHHHhC------CeEEEccccCCCCHHHHHHHHHH
Confidence 555543 44555553 24589999999999999988876
No 8
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.8e-19 Score=182.87 Aligned_cols=158 Identities=18% Similarity=0.341 Sum_probs=123.1
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~y 565 (1363)
.+|++++|+.|||||+|+.++..+ |..++ .+|-||+... .+++.+++.|||+||||.|
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~-----------------~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERF 71 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESY-----------------ISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF 71 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhh-----------------cceeeeEEEEEEeeecceEEEEEeeeccccHHH
Confidence 479999999999999999999987 65443 3467766553 3478999999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
+++-+.|++ .+...|+|||+++ .+++ ..+..|+..|...+...+ |+++||||+|+......
T Consensus 72 rtit~syYR---~ahGii~vyDiT~---------~~SF-~~v~~Wi~Ei~~~~~~~v------~~lLVGNK~Dl~~~~~v 132 (205)
T KOG0084|consen 72 RTITSSYYR---GAHGIIFVYDITK---------QESF-NNVKRWIQEIDRYASENV------PKLLVGNKCDLTEKRVV 132 (205)
T ss_pred hhhhHhhcc---CCCeEEEEEEccc---------HHHh-hhHHHHHHHhhhhccCCC------CeEEEeeccccHhheec
Confidence 999999999 8889999999995 2233 667999999998766544 79999999999766555
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
..+++ + .|.+...+. .++++|++++.++++.|..|...+
T Consensus 133 ~~~~a----~----~fa~~~~~~-~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 133 STEEA----Q----EFADELGIP-IFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred CHHHH----H----HHHHhcCCc-ceeecccCCccCHHHHHHHHHHHH
Confidence 44433 2 333332222 278999999999999998887643
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.78 E-value=2.2e-18 Score=186.14 Aligned_cols=155 Identities=14% Similarity=0.230 Sum_probs=115.5
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE--E--EecCceEEEEEecCCchh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK--T--LKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~--~--~~~~~~~l~iWDfaGQe~ 564 (1363)
..+|++++|+.|||||||++++..+ +...+ ..|.|++.. + ..+..+.+.+||++||+.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~-----------------~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~ 67 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPY-----------------GYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------------CCcceeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 3479999999999999999999976 33222 224444432 2 234578999999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|..+++.|+. ...++|+|||+++ ..++ +.+..|++.|..+.+ .+|++|||||.|+.....
T Consensus 68 ~~~l~~~~~~---~ad~illVfD~t~---------~~Sf-~~~~~w~~~i~~~~~-------~~piilVGNK~DL~~~~~ 127 (189)
T cd04121 68 FCTIFRSYSR---GAQGIILVYDITN---------RWSF-DGIDRWIKEIDEHAP-------GVPKILVGNRLHLAFKRQ 127 (189)
T ss_pred HHHHHHHHhc---CCCEEEEEEECcC---------HHHH-HHHHHHHHHHHHhCC-------CCCEEEEEECccchhccC
Confidence 9999999999 8999999999984 3445 556899999977543 348999999999965433
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...+++ +.+.++.. -.+|++||+++.||+++|+.|.+
T Consensus 128 v~~~~~----~~~a~~~~------~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 128 VATEQA----QAYAERNG------MTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred CCHHHH----HHHHHHcC------CEEEEecCCCCCCHHHHHHHHHH
Confidence 333322 23332321 14689999999999999998875
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.78 E-value=3.8e-18 Score=186.12 Aligned_cols=155 Identities=21% Similarity=0.386 Sum_probs=113.2
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchhhhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y~~ 567 (1363)
.++++|++|||||||++++..+ |...+.+ |.|++.. .+.++.+++.+||+|||+.|..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~-----------------Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~ 64 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKS-----------------GVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 64 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCC-----------------cceeEEEEEEEEECCEEEEEEEEeCCCchhhHH
Confidence 6899999999999999999976 5443333 4443322 2335679999999999999999
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
+++.|++ .+.++++|||+++ .+++ +.+..|++.++..... .+|++|||||.|+...+....
T Consensus 65 l~~~y~~---~ad~iIlVfDvtd---------~~Sf-~~l~~w~~~i~~~~~~------~~piilVgNK~DL~~~~~v~~ 125 (202)
T cd04120 65 ITSAYYR---SAKGIILVYDITK---------KETF-DDLPKWMKMIDKYASE------DAELLLVGNKLDCETDREISR 125 (202)
T ss_pred HHHHHhc---CCCEEEEEEECcC---------HHHH-HHHHHHHHHHHHhCCC------CCcEEEEEECcccccccccCH
Confidence 9999999 8999999999985 3444 5568899988764322 358999999999864333322
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
+.. +++..+..+ -.+|.+||++|.||+++|+.|.+.
T Consensus 126 ~~~----~~~a~~~~~-----~~~~etSAktg~gV~e~F~~l~~~ 161 (202)
T cd04120 126 QQG----EKFAQQITG-----MRFCEASAKDNFNVDEIFLKLVDD 161 (202)
T ss_pred HHH----HHHHHhcCC-----CEEEEecCCCCCCHHHHHHHHHHH
Confidence 221 222222211 146899999999999999988763
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.77 E-value=4.8e-18 Score=182.61 Aligned_cols=160 Identities=18% Similarity=0.302 Sum_probs=117.0
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSL 568 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~t 568 (1363)
..+|++++|++|||||||++++..+ |...+.||++. ... .....+++.+.+.+||++||+.|..+
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~-------------~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~ 69 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-------------NYT-ASFEIDTQRIELSLWDTSGSPYYDNV 69 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceee-------------eeE-EEEEECCEEEEEEEEECCCchhhHhh
Confidence 4579999999999999999999987 65555555432 111 11233466789999999999999999
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC-----
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP----- 643 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~----- 643 (1363)
.+.|++ .+.++++|||+++ .++++..+..|++.|+...+ .+|++|||||.|+....
T Consensus 70 ~~~~~~---~ad~~ilvyDit~---------~~Sf~~~~~~w~~~i~~~~~-------~~piilVgNK~DL~~~~~~~~~ 130 (182)
T cd04172 70 RPLSYP---DSDAVLICFDISR---------PETLDSVLKKWKGEIQEFCP-------NTKMLLVGCKSDLRTDLTTLVE 130 (182)
T ss_pred hhhhcC---CCCEEEEEEECCC---------HHHHHHHHHHHHHHHHHHCC-------CCCEEEEeEChhhhcChhhHHH
Confidence 999999 8999999999984 45564445899999987543 34799999999985321
Q ss_pred -------chhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCC-hhHHHHHHHH
Q 000665 644 -------SQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSAS-VTKLTHHIRK 691 (1363)
Q Consensus 644 -------~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~-i~~L~~~L~~ 691 (1363)
....++ .+++.++++. ..++++||+++.| |+++|+.+..
T Consensus 131 ~~~~~~~~v~~~~----~~~~a~~~~~-----~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 131 LSNHRQTPVSYDQ----GANMAKQIGA-----ATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHhcCCCCCCHHH----HHHHHHHcCC-----CEEEECCcCCCCCCHHHHHHHHHH
Confidence 122222 2333334321 1458999999998 9999987765
No 12
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.77 E-value=5e-18 Score=181.33 Aligned_cols=158 Identities=16% Similarity=0.291 Sum_probs=116.2
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|++|+|||||+.++..+ |...+.||++. +.-.. ....+..+++.|||++||+.|+.+++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~-------------~~~~~-~~~~~~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-------------NFSAN-VSVDGNTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCccee-------------eeEEE-EEECCEEEEEEEEECCCCccccccch
Confidence 59999999999999999999987 66656665542 11111 12345679999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc------
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS------ 644 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~------ 644 (1363)
.+++ .++++|+|||+++ .++++....+|++.++...+ .+|++|||||.|+.....
T Consensus 68 ~~~~---~a~~~ilvyd~~~---------~~Sf~~~~~~w~~~i~~~~~-------~~piilvgnK~Dl~~~~~~~~~~~ 128 (176)
T cd04133 68 LSYR---GADVFVLAFSLIS---------RASYENVLKKWVPELRHYAP-------NVPIVLVGTKLDLRDDKQYLADHP 128 (176)
T ss_pred hhcC---CCcEEEEEEEcCC---------HHHHHHHHHHHHHHHHHhCC-------CCCEEEEEeChhhccChhhhhhcc
Confidence 9999 8999999999984 45554444799999976432 358999999999964321
Q ss_pred ----hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 645 ----QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 645 ----~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...++ .+.+...+.. ..++++||+++.||+++|+.+.+
T Consensus 129 ~~~~v~~~~----~~~~a~~~~~-----~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 129 GASPITTAQ----GEELRKQIGA-----AAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred CCCCCCHHH----HHHHHHHcCC-----CEEEECCCCcccCHHHHHHHHHH
Confidence 11111 2233333321 24689999999999999998876
No 13
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=6.6e-18 Score=181.07 Aligned_cols=159 Identities=17% Similarity=0.302 Sum_probs=115.6
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
++|++++|++|||||||++++.++ |...+.||++. .. .......++.+.+.+||++||+.|..++
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-------------~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~ 66 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFE-------------NY-TASFEIDEQRIELSLWDTSGSPYYDNVR 66 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEE-------------EE-EEEEEECCEEEEEEEEECCCchhhhhcc
Confidence 479999999999999999999987 65555555432 00 0112234667899999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC------
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP------ 643 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~------ 643 (1363)
+.|++ ...++|+|||+++ .++++..+..|+..|+...+ .+|++|||||.|+....
T Consensus 67 ~~~~~---~a~~~ilvfdit~---------~~Sf~~~~~~w~~~i~~~~~-------~~~iilVgnK~DL~~~~~~~~~~ 127 (178)
T cd04131 67 PLCYP---DSDAVLICFDISR---------PETLDSVLKKWRGEIQEFCP-------NTKVLLVGCKTDLRTDLSTLMEL 127 (178)
T ss_pred hhhcC---CCCEEEEEEECCC---------hhhHHHHHHHHHHHHHHHCC-------CCCEEEEEEChhhhcChhHHHHH
Confidence 99999 8999999999984 45564446899999987543 34799999999985321
Q ss_pred ------chhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCC-hhHHHHHHHH
Q 000665 644 ------SQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSAS-VTKLTHHIRK 691 (1363)
Q Consensus 644 ------~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~-i~~L~~~L~~ 691 (1363)
....++ .+++.++++. ..+|++||+++.+ |+++|..+..
T Consensus 128 ~~~~~~~v~~~e----~~~~a~~~~~-----~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 128 SHQRQAPVSYEQ----GCAIAKQLGA-----EIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HhcCCCCCCHHH----HHHHHHHhCC-----CEEEECccCcCCcCHHHHHHHHHH
Confidence 111222 2333333321 2468999999985 9999988765
No 14
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.76 E-value=1.3e-17 Score=178.45 Aligned_cols=162 Identities=19% Similarity=0.307 Sum_probs=113.9
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
++|++++|++|||||||++++..+ |...+.||++. ...+.+ ...++.+++.|||++||+.|..++
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~-------------~~~~~~-~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-------------NYAVTV-MIGGEPYTLGLFDTAGQEDYDRLR 66 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee-------------eeEEEE-EECCEEEEEEEEECCCccchhhhh
Confidence 369999999999999999999977 65555555432 111222 234567899999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
+.|+. ...++++|||+++ .+.++....+|+..++...+ ..|++|||||.|+...... .+.
T Consensus 67 ~~~~~---~a~~~ilv~d~~~---------~~s~~~~~~~w~~~i~~~~~-------~~piilvgnK~Dl~~~~~~-~~~ 126 (175)
T cd01874 67 PLSYP---QTDVFLVCFSVVS---------PSSFENVKEKWVPEITHHCP-------KTPFLLVGTQIDLRDDPST-IEK 126 (175)
T ss_pred hhhcc---cCCEEEEEEECCC---------HHHHHHHHHHHHHHHHHhCC-------CCCEEEEEECHhhhhChhh-HHH
Confidence 99999 8999999999984 34453333579999876432 3489999999998543210 000
Q ss_pred H---------HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 650 T---------VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 650 ~---------~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
. .+..+++..+++. ..+|++||++|.|++++++.+.+
T Consensus 127 l~~~~~~~v~~~~~~~~a~~~~~-----~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 127 LAKNKQKPITPETGEKLARDLKA-----VKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred hhhccCCCcCHHHHHHHHHHhCC-----cEEEEecCCCCCCHHHHHHHHHH
Confidence 0 0111222223221 25799999999999999988765
No 15
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.9e-18 Score=165.16 Aligned_cols=154 Identities=22% Similarity=0.372 Sum_probs=113.7
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcce----EEEEEecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGM----KIKTLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi----~i~~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
.|++++|+.|+|||+|++++.++ |.... ..|.|+ +...+.++.+++.|||+||||.|+
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgq-----------------gatigvdfmiktvev~gekiklqiwdtagqerfr 70 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQ-----------------GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFR 70 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCC-----------------CceeeeeEEEEEEEECCeEEEEEEeeccchHHHH
Confidence 69999999999999999999998 54322 234453 334455889999999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
++.|-|++ ++...+||||++= ...+ +-+-.||+.|...+.+.+ --|+||||.|+-..++..
T Consensus 71 sitqsyyr---sahalilvydisc---------qpsf-dclpewlreie~yan~kv------lkilvgnk~d~~drrevp 131 (213)
T KOG0095|consen 71 SITQSYYR---SAHALILVYDISC---------QPSF-DCLPEWLREIEQYANNKV------LKILVGNKIDLADRREVP 131 (213)
T ss_pred HHHHHHhh---hcceEEEEEeccc---------Ccch-hhhHHHHHHHHHHhhcce------EEEeeccccchhhhhhhh
Confidence 99999999 8889999999973 1223 677999999998665532 358999999996433322
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+ +-+.|...-+. -+...|+++..++++||..+..
T Consensus 132 ~q--------igeefs~~qdm--yfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 132 QQ--------IGEEFSEAQDM--YFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred HH--------HHHHHHHhhhh--hhhhhcccchhhHHHHHHHHHH
Confidence 22 22233221000 1256899999999999988765
No 16
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.9e-18 Score=171.97 Aligned_cols=159 Identities=17% Similarity=0.265 Sum_probs=123.0
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSL 568 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~t 568 (1363)
...|++++|+.|||||+|+.++... |......|+|. .+|....++++++++++|||+||||.|++.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGv-------------efg~r~~~id~k~IKlqiwDtaGqe~frsv 71 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGV-------------EFGARMVTIDGKQIKLQIWDTAGQESFRSV 71 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeee-------------eeceeEEEEcCceEEEEEEecCCcHHHHHH
Confidence 3579999999999999999999987 55444333332 345555667789999999999999999999
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhc-hhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNS-RRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~-~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
..-|++ .++..|||||++++ +++ ..|..||..++.+. ++. .++|+|||+|+...+.++.
T Consensus 72 ~~syYr---~a~GalLVydit~r---------~sF-~hL~~wL~D~rq~~~~Nm-------vImLiGNKsDL~~rR~Vs~ 131 (216)
T KOG0098|consen 72 TRSYYR---GAAGALLVYDITRR---------ESF-NHLTSWLEDARQHSNENM-------VIMLIGNKSDLEARREVSK 131 (216)
T ss_pred HHHHhc---cCcceEEEEEccch---------hhH-HHHHHHHHHHHHhcCCCc-------EEEEEcchhhhhccccccH
Confidence 999999 89999999999862 333 77899999999875 443 5899999999987776666
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
++..+..+ +.+ . ..+.+||+++.+|++.|.....
T Consensus 132 EEGeaFA~----ehg-L-----ifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 132 EEGEAFAR----EHG-L-----IFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred HHHHHHHH----HcC-c-----eeehhhhhhhhhHHHHHHHHHH
Confidence 65543333 221 1 2357899999999998866554
No 17
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=1e-17 Score=185.89 Aligned_cols=161 Identities=14% Similarity=0.309 Sum_probs=118.4
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSL 568 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~t 568 (1363)
.++|++++|++|||||||++++..+ |...+.||++. ..+.. ....+..+.+.|||++||+.|..+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~-----------~~~~~---i~~~~~~v~l~iwDTaG~e~~~~~ 77 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFE-----------NYTAG---LETEEQRVELSLWDTSGSPYYDNV 77 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceee-----------eeEEE---EEECCEEEEEEEEeCCCchhhHHH
Confidence 4689999999999999999999987 76666665542 00111 123467889999999999999999
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC------
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ------ 642 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~------ 642 (1363)
.+.|+. .+.++++|||+++ .++++..+..|+..|+...+ ..||+|||||.|+...
T Consensus 78 ~~~~~~---~ad~vIlVyDit~---------~~Sf~~~~~~w~~~i~~~~~-------~~piilVgNK~DL~~~~~~~~~ 138 (232)
T cd04174 78 RPLCYS---DSDAVLLCFDISR---------PETVDSALKKWKAEIMDYCP-------STRILLIGCKTDLRTDLSTLME 138 (232)
T ss_pred HHHHcC---CCcEEEEEEECCC---------hHHHHHHHHHHHHHHHHhCC-------CCCEEEEEECcccccccchhhh
Confidence 999999 8999999999984 45665556899999987433 2479999999998532
Q ss_pred ------CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCC-ChhHHHHHHHHH
Q 000665 643 ------PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSA-SVTKLTHHIRKT 692 (1363)
Q Consensus 643 ------~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~-~i~~L~~~L~~~ 692 (1363)
.....++ .+++.++++- ..+|++||+++. +|+++|..+...
T Consensus 139 l~~~~~~~Vs~~e----~~~~a~~~~~-----~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 139 LSNQKQAPISYEQ----GCALAKQLGA-----EVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred hccccCCcCCHHH----HHHHHHHcCC-----CEEEEccCCcCCcCHHHHHHHHHHH
Confidence 1122222 2333333321 135899999997 899999988764
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=6.4e-20 Score=212.15 Aligned_cols=331 Identities=13% Similarity=0.137 Sum_probs=210.5
Q ss_pred CCccEEEEecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHH-
Q 000665 74 TSLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLAS- 152 (1363)
Q Consensus 74 ~~L~~L~Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~- 152 (1363)
+..+.|+|++|.+++..+.. +...++|+++++.+|.++... ..-....+|+.|+|.+|.|+....+.+..
T Consensus 78 ~~t~~LdlsnNkl~~id~~~----f~nl~nLq~v~l~~N~Lt~IP-----~f~~~sghl~~L~L~~N~I~sv~se~L~~l 148 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEF----FYNLPNLQEVNLNKNELTRIP-----RFGHESGHLEKLDLRHNLISSVTSEELSAL 148 (873)
T ss_pred cceeeeeccccccccCcHHH----HhcCCcceeeeeccchhhhcc-----cccccccceeEEeeeccccccccHHHHHhH
Confidence 34456888888665544421 234455555555555444321 11111234455555555444322222211
Q ss_pred -------------------HhccCCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCC
Q 000665 153 -------------------ALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNR 213 (1363)
Q Consensus 153 -------------------~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~ 213 (1363)
.+....+|++|+|++|.|++.+...+. ...+|..|.|+.|.+..- -...+.+++
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~----~lnsL~tlkLsrNrittL---p~r~Fk~L~ 221 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD----SLNSLLTLKLSRNRITTL---PQRSFKRLP 221 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc----ccchheeeecccCccccc---CHHHhhhcc
Confidence 111223578888888888776655443 334678888888865442 124566678
Q ss_pred CceEEEccCCCCcchhHHHhh--cCCCCcceeeccCchhHHHHHHH-hcCCCcccEEEccCCCCChHHHHHHHHHHhhCC
Q 000665 214 AMEVHVWSGENGEKSSKVVEF--LPENGTLRIYRLDVSGSCRVACS-LGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQ 290 (1363)
Q Consensus 214 ~L~~L~Ls~n~~~~~~~l~~~--L~~~~~L~~L~Ls~~g~~~L~~~-L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~ 290 (1363)
.|+.|+|..|. ..+.++ ++.+++|+.+.+..+++..+-++ +-.+.++++|+|+.|+++...-.. +-..+
T Consensus 222 ~L~~LdLnrN~----irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~----lfgLt 293 (873)
T KOG4194|consen 222 KLESLDLNRNR----IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW----LFGLT 293 (873)
T ss_pred hhhhhhccccc----eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc----ccccc
Confidence 88888888883 233333 34777888888887777777653 345678999999999987643222 33458
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCH
Q 000665 291 SLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGR 370 (1363)
Q Consensus 291 ~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~ 370 (1363)
+|+.|+||+|.|....+. +-.-+++|++|+||+|+|+.....++.. ...|+.|+|+ +|.|+.
T Consensus 294 ~L~~L~lS~NaI~rih~d----~WsftqkL~~LdLs~N~i~~l~~~sf~~------------L~~Le~LnLs--~Nsi~~ 355 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHID----SWSFTQKLKELDLSSNRITRLDEGSFRV------------LSQLEELNLS--HNSIDH 355 (873)
T ss_pred hhhhhccchhhhheeecc----hhhhcccceeEeccccccccCChhHHHH------------HHHhhhhccc--ccchHH
Confidence 899999999998754433 3356789999999999999888777743 4579999998 688765
Q ss_pred HHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeecCCCCCChhHHHHH-HHHHhcCCCccEEe
Q 000665 371 DGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAI-METLQVNPWIEDID 449 (1363)
Q Consensus 371 ~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L-~~~L~~n~~L~~Ld 449 (1363)
..-. ++...++|+.|||++|. ++-. +..-+..+..+++|+.|+|.||+. +.+ -.++...+.|++||
T Consensus 356 l~e~----af~~lssL~~LdLr~N~-ls~~-IEDaa~~f~gl~~LrkL~l~gNql-------k~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 356 LAEG----AFVGLSSLHKLDLRSNE-LSWC-IEDAAVAFNGLPSLRKLRLTGNQL-------KSIPKRAFSGLEALEHLD 422 (873)
T ss_pred HHhh----HHHHhhhhhhhcCcCCe-EEEE-EecchhhhccchhhhheeecCcee-------eecchhhhccCcccceec
Confidence 4322 33456789999999994 4320 111233344578999999999983 222 35677789999999
Q ss_pred ccCCCCCCCC
Q 000665 450 LERTPLKNSG 459 (1363)
Q Consensus 450 L~~N~l~~~g 459 (1363)
|.+|+|...-
T Consensus 423 L~~NaiaSIq 432 (873)
T KOG4194|consen 423 LGDNAIASIQ 432 (873)
T ss_pred CCCCcceeec
Confidence 9999987643
No 19
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.75 E-value=4.2e-18 Score=166.74 Aligned_cols=159 Identities=14% Similarity=0.314 Sum_probs=120.6
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
.+|++++|.+.||||||+-+++.+ |+...+.|+.. .. .+.-+ .+.+....++|||+|||+.||+.-
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQA------SF----~~kk~---n~ed~ra~L~IWDTAGQErfHALG 79 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQA------SF----QNKKV---NVEDCRADLHIWDTAGQERFHALG 79 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHH------HH----hhccc---ccccceeeeeeeeccchHhhhccC
Confidence 479999999999999999999988 77665555432 00 01111 223577899999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
+.|++ .....|||||+++ .+.+ +.+..|...++....+.+ .++|||||+|+-.++.+..++
T Consensus 80 PIYYR---gSnGalLVyDITD---------rdSF-qKVKnWV~Elr~mlGnei------~l~IVGNKiDLEeeR~Vt~qe 140 (218)
T KOG0088|consen 80 PIYYR---GSNGALLVYDITD---------RDSF-QKVKNWVLELRTMLGNEI------ELLIVGNKIDLEEERQVTRQE 140 (218)
T ss_pred ceEEe---CCCceEEEEeccc---------hHHH-HHHHHHHHHHHHHhCCee------EEEEecCcccHHHhhhhhHHH
Confidence 99999 6778999999996 2344 677999999988554433 699999999996655555665
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+.+..+..-..| +..|+++..||.+||+.|..
T Consensus 141 Ae~YAesvGA~y----------~eTSAk~N~Gi~elFe~Lt~ 172 (218)
T KOG0088|consen 141 AEAYAESVGALY----------METSAKDNVGISELFESLTA 172 (218)
T ss_pred HHHHHHhhchhh----------eecccccccCHHHHHHHHHH
Confidence 544444433333 67899999999999998865
No 20
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.75 E-value=1.5e-17 Score=180.58 Aligned_cols=162 Identities=19% Similarity=0.289 Sum_probs=114.2
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
.+|++++|++|||||||++++..+ |...+.||++. ..... ....++.+.+.|||++||+.|..++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-------------~~~~~-~~~~~~~~~l~i~Dt~G~e~~~~l~ 68 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD-------------NYSAQ-TAVDGRTVSLNLWDTAGQEEYDRLR 68 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEe-------------eeEEE-EEECCEEEEEEEEECCCchhhhhhh
Confidence 479999999999999999999987 65555555432 11111 1244667899999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
+.|+. ...++++|||+++ .++++..-.+|+..+....+ .+|++|||||.|+...... .+.
T Consensus 69 ~~~~~---~a~~~ilvydit~---------~~Sf~~~~~~w~~~i~~~~~-------~~piilvgNK~DL~~~~~~-~~~ 128 (191)
T cd01875 69 TLSYP---QTNVFIICFSIAS---------PSSYENVRHKWHPEVCHHCP-------NVPILLVGTKKDLRNDADT-LKK 128 (191)
T ss_pred hhhcc---CCCEEEEEEECCC---------HHHHHHHHHHHHHHHHhhCC-------CCCEEEEEeChhhhcChhh-HHH
Confidence 99999 8999999999984 45553333579988876332 3589999999999643211 000
Q ss_pred H---------HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 650 T---------VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 650 ~---------~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
. .+..+.+..++.. ..+|++||+++.||+++++.|.+
T Consensus 129 ~~~~~~~~v~~~~~~~~a~~~~~-----~~~~e~SAk~g~~v~e~f~~l~~ 174 (191)
T cd01875 129 LKEQGQAPITPQQGGALAKQIHA-----VKYLECSALNQDGVKEVFAEAVR 174 (191)
T ss_pred HhhccCCCCCHHHHHHHHHHcCC-----cEEEEeCCCCCCCHHHHHHHHHH
Confidence 0 0011222222211 24689999999999999988875
No 21
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.75 E-value=2.4e-17 Score=177.41 Aligned_cols=159 Identities=18% Similarity=0.341 Sum_probs=113.4
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|++|||||||++++..+ |...+.| |.|.++. ...+..+.+.|||++||+.|.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~-----------------T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~ 63 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQ-----------------TLGVNFMEKTISIRGTEITFSIWDLGGQREFI 63 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----------------ccceEEEEEEEEECCEEEEEEEEeCCCchhHH
Confidence 48999999999999999999876 5443333 5554442 223557899999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch-
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ- 645 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~- 645 (1363)
.+++.|+. ...++++|||+++ .+.+ +.+..|+..+....+. .+| ++||||+|+......
T Consensus 64 ~~~~~~~~---~a~~iilv~D~t~---------~~s~-~~i~~~~~~~~~~~~~------~~p-ilVgnK~Dl~~~~~~~ 123 (182)
T cd04128 64 NMLPLVCN---DAVAILFMFDLTR---------KSTL-NSIKEWYRQARGFNKT------AIP-ILVGTKYDLFADLPPE 123 (182)
T ss_pred HhhHHHCc---CCCEEEEEEECcC---------HHHH-HHHHHHHHHHHHhCCC------CCE-EEEEEchhccccccch
Confidence 99999999 8999999999985 2333 5668899998764332 245 689999999642211
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
..+...+..+++.+.+. ..++.+||+++.|++++++.|.+.+
T Consensus 124 ~~~~~~~~~~~~a~~~~------~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 124 EQEEITKQARKYAKAMK------APLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred hhhhhHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11111122233333332 2578999999999999999887643
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=1.3e-20 Score=217.76 Aligned_cols=311 Identities=15% Similarity=0.165 Sum_probs=169.3
Q ss_pred HHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCC
Q 000665 91 MRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSI 170 (1363)
Q Consensus 91 ~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i 170 (1363)
+..+.+-|+.+.+|+.|.+++|++...- .-|...+.|+++.+..|++...|+ +.-+...+.|+.||||.|++
T Consensus 44 L~~vPeEL~~lqkLEHLs~~HN~L~~vh-----GELs~Lp~LRsv~~R~N~LKnsGi---P~diF~l~dLt~lDLShNqL 115 (1255)
T KOG0444|consen 44 LEQVPEELSRLQKLEHLSMAHNQLISVH-----GELSDLPRLRSVIVRDNNLKNSGI---PTDIFRLKDLTILDLSHNQL 115 (1255)
T ss_pred hhhChHHHHHHhhhhhhhhhhhhhHhhh-----hhhccchhhHHHhhhccccccCCC---Cchhcccccceeeecchhhh
Confidence 3445566667777777777777765431 124445677777777777665443 23344566788888888887
Q ss_pred ChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCchh
Q 000665 171 GSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSG 250 (1363)
Q Consensus 171 ~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g 250 (1363)
.. .+..|...+++-.|+||+|++.+-.. ..+.++..|-.||||+|..+ .++...+.+..|+.|+++.+.
T Consensus 116 ~E-----vP~~LE~AKn~iVLNLS~N~IetIPn---~lfinLtDLLfLDLS~NrLe---~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 116 RE-----VPTNLEYAKNSIVLNLSYNNIETIPN---SLFINLTDLLFLDLSNNRLE---MLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred hh-----cchhhhhhcCcEEEEcccCccccCCc---hHHHhhHhHhhhccccchhh---hcCHHHHHHhhhhhhhcCCCh
Confidence 64 55566666777888888887544222 22344456777888887421 123333345555555555544
Q ss_pred HHHHH-HHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCC
Q 000665 251 SCRVA-CSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNW 329 (1363)
Q Consensus 251 ~~~L~-~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~ 329 (1363)
+..+. ..|...++|+.|.+|+.+=+- ..++..|....+|..+|||.|.+. .+++.+.+..+|+.|+||+|+
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl---~N~Ptsld~l~NL~dvDlS~N~Lp-----~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTL---DNIPTSLDDLHNLRDVDLSENNLP-----IVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchh---hcCCCchhhhhhhhhccccccCCC-----cchHHHhhhhhhheeccCcCc
Confidence 33221 112222333333333332111 112222222334444444444444 244444444444455555444
Q ss_pred CCHhhHH------------------HHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEe
Q 000665 330 FSGVGVE------------------HLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGI 391 (1363)
Q Consensus 330 l~~~g~~------------------~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~L 391 (1363)
|+...+. .+..++ .+.++|+.|.+. +|+++-+| |+..++...+|+.+..
T Consensus 257 iteL~~~~~~W~~lEtLNlSrNQLt~LP~av--------cKL~kL~kLy~n--~NkL~FeG---iPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 257 ITELNMTEGEWENLETLNLSRNQLTVLPDAV--------CKLTKLTKLYAN--NNKLTFEG---IPSGIGKLIQLEVFHA 323 (1255)
T ss_pred eeeeeccHHHHhhhhhhccccchhccchHHH--------hhhHHHHHHHhc--cCcccccC---CccchhhhhhhHHHHh
Confidence 4432211 011111 123444555443 45555444 3344455555666666
Q ss_pred cCCCCCCHHHHHHHHHHHhhCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCCC
Q 000665 392 YDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTP 454 (1363)
Q Consensus 392 s~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~ 454 (1363)
++|. +..+++++..+..|+.|.|+.|.. -+|++++-.++.|+.|||.+||
T Consensus 324 anN~------LElVPEglcRC~kL~kL~L~~NrL-------iTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 324 ANNK------LELVPEGLCRCVKLQKLKLDHNRL-------ITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hccc------cccCchhhhhhHHHHHhcccccce-------eechhhhhhcCCcceeeccCCc
Confidence 6663 455677788888888888888872 2367888888999999999998
No 23
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.74 E-value=2.1e-18 Score=232.59 Aligned_cols=227 Identities=14% Similarity=0.174 Sum_probs=94.8
Q ss_pred CccEEEEecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHh
Q 000665 75 SLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASAL 154 (1363)
Q Consensus 75 ~L~~L~Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L 154 (1363)
+++.|+|+++.+... +...+..+++|+.|+|++|.++..-... ....+++|++|+|++|.++.. +. .
T Consensus 70 ~v~~L~L~~~~i~~~----~~~~~~~l~~L~~L~Ls~n~~~~~ip~~---~~~~l~~L~~L~Ls~n~l~~~----~p--~ 136 (968)
T PLN00113 70 RVVSIDLSGKNISGK----ISSAIFRLPYIQTINLSNNQLSGPIPDD---IFTTSSSLRYLNLSNNNFTGS----IP--R 136 (968)
T ss_pred cEEEEEecCCCcccc----CChHHhCCCCCCEEECCCCccCCcCChH---HhccCCCCCEEECcCCccccc----cC--c
Confidence 455555555544321 1233445555566666655554211111 111344555555555555310 00 0
Q ss_pred ccCCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhh
Q 000665 155 KVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEF 234 (1363)
Q Consensus 155 ~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~ 234 (1363)
...++|++|+|++|.++.. +...+...++|+.|+|++|.+.+. ++..+...++|++|+|++|.... .+...
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~L~~n~l~~--~~p~~ 207 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGE----IPNDIGSFSSLKVLDLGGNVLVGK---IPNSLTNLTSLEFLTLASNQLVG--QIPRE 207 (968)
T ss_pred cccCCCCEEECcCCccccc----CChHHhcCCCCCEEECccCccccc---CChhhhhCcCCCeeeccCCCCcC--cCChH
Confidence 1234455555555555421 222333444555555555543221 22234444555555555553110 12223
Q ss_pred cCCCCcceeeccCchhHH-HHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 000665 235 LPENGTLRIYRLDVSGSC-RVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAG 313 (1363)
Q Consensus 235 L~~~~~L~~L~Ls~~g~~-~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~ 313 (1363)
+..+.+|+.++++.+.+. .++..+..+++|+.|+|++|.++.. +...+..+++|+.|+|++|.++. .++..
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~ 279 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSG----PIPPS 279 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc----cChhHhCCCCCCEEECcCCeeec----cCchh
Confidence 334444444444443332 2333344444555555555544332 12223333444455554444432 12223
Q ss_pred HhcCCCCCEEEccCCCCC
Q 000665 314 LFKNRSLESLYLHGNWFS 331 (1363)
Q Consensus 314 L~~~~~L~~LdLs~N~l~ 331 (1363)
+..+++|++|+|++|.++
T Consensus 280 l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 280 IFSLQKLISLDLSDNSLS 297 (968)
T ss_pred HhhccCcCEEECcCCeec
Confidence 334444444444444444
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=2.8e-20 Score=215.11 Aligned_cols=294 Identities=14% Similarity=0.110 Sum_probs=206.6
Q ss_pred CCCccEEEEecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHH
Q 000665 73 HTSLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLAS 152 (1363)
Q Consensus 73 ~~~L~~L~Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~ 152 (1363)
-+.|+++.+..|++...|+ ..-+.....|+.||||+|++... ...|..-+++-.|+||+|+|...--..
T Consensus 77 Lp~LRsv~~R~N~LKnsGi---P~diF~l~dLt~lDLShNqL~Ev-----P~~LE~AKn~iVLNLS~N~IetIPn~l--- 145 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGI---PTDIFRLKDLTILDLSHNQLREV-----PTNLEYAKNSIVLNLSYNNIETIPNSL--- 145 (1255)
T ss_pred chhhHHHhhhccccccCCC---Cchhcccccceeeecchhhhhhc-----chhhhhhcCcEEEEcccCccccCCchH---
Confidence 3555555555555444443 33344566777777777776543 223444567777777777775321111
Q ss_pred HhccCCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCC---CceEEEccCCCCcchh
Q 000665 153 ALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNR---AMEVHVWSGENGEKSS 229 (1363)
Q Consensus 153 ~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~---~L~~L~Ls~n~~~~~~ 229 (1363)
+.....|-.||||+|.+.. ++..++....|++|.||+|.+ .-..+.+++ +|++|.+|+.+. ...
T Consensus 146 -finLtDLLfLDLS~NrLe~-----LPPQ~RRL~~LqtL~Ls~NPL------~hfQLrQLPsmtsL~vLhms~TqR-Tl~ 212 (1255)
T KOG0444|consen 146 -FINLTDLLFLDLSNNRLEM-----LPPQIRRLSMLQTLKLSNNPL------NHFQLRQLPSMTSLSVLHMSNTQR-TLD 212 (1255)
T ss_pred -HHhhHhHhhhccccchhhh-----cCHHHHHHhhhhhhhcCCChh------hHHHHhcCccchhhhhhhcccccc-hhh
Confidence 1223446677777777653 555566667788888888753 122344444 456667776642 122
Q ss_pred HHHhhcCCCCcceeeccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHH
Q 000665 230 KVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVY 309 (1363)
Q Consensus 230 ~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~ 309 (1363)
.++..+..+.+|+.++++.+.+..+++.+-...+|+.|+||+|+|+...+ ....-.+|++|+||.|+++ .
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~-----~~~~W~~lEtLNlSrNQLt-----~ 282 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM-----TEGEWENLETLNLSRNQLT-----V 282 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec-----cHHHHhhhhhhccccchhc-----c
Confidence 34555556778888899999999999999899999999999999987432 2233467999999999998 4
Q ss_pred HHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEE
Q 000665 310 VAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQL 389 (1363)
Q Consensus 310 L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L 389 (1363)
+++++.+++.|+.|.+.+|+++-+|+.+=. .+..+|+.+..+ +|.+.- +++.++.|..|+.|
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGI-----------GKL~~Levf~aa--nN~LEl-----VPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGI-----------GKLIQLEVFHAA--NNKLEL-----VPEGLCRCVKLQKL 344 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccch-----------hhhhhhHHHHhh--cccccc-----CchhhhhhHHHHHh
Confidence 888999999999999999999988865432 456788888887 566543 45678999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHhhCCCccEEEeecCC
Q 000665 390 GIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCK 424 (1363)
Q Consensus 390 ~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~ 424 (1363)
.|+.|. +..+++++--++.|+.|+|..|.
T Consensus 345 ~L~~Nr------LiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 345 KLDHNR------LITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred cccccc------eeechhhhhhcCCcceeeccCCc
Confidence 999996 56789999889999999999987
No 25
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.73 E-value=2e-17 Score=162.74 Aligned_cols=159 Identities=16% Similarity=0.258 Sum_probs=119.4
Q ss_pred CCCceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEE----EEEecCceEEEEEecCCc
Q 000665 488 EPKSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKI----KTLKDEDTRISIWNLAGQ 562 (1363)
Q Consensus 488 ~~~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i----~~~~~~~~~l~iWDfaGQ 562 (1363)
...++|++++|+.|||||||+.++..+ |... .+.|.|++. ..++++..++-|||+|||
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~-----------------~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq 70 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDL-----------------HPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ 70 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCcc-----------------CCceeeeeEEEEEEEEcCceEEEEEEeccch
Confidence 456799999999999999999999977 4321 223566543 345678999999999999
Q ss_pred hhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 563 HEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 563 e~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
|.|+...+-|++ .+...|+|||++. -+++ ..+..|+..|.....+. ..-.++||||+|+-+.
T Consensus 71 ErFRtLTpSyyR---gaqGiIlVYDVT~---------Rdtf-~kLd~W~~Eld~Ystn~-----diikmlVgNKiDkes~ 132 (209)
T KOG0080|consen 71 ERFRTLTPSYYR---GAQGIILVYDVTS---------RDTF-VKLDIWLKELDLYSTNP-----DIIKMLVGNKIDKESE 132 (209)
T ss_pred HhhhccCHhHhc---cCceeEEEEEccc---------hhhH-HhHHHHHHHHHhhcCCc-----cHhHhhhcccccchhc
Confidence 999999999999 8889999999985 2344 55699999998743221 2236899999999766
Q ss_pred CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 643 PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+.++.++.....++.+.- +++.|+++..+++..|+.|..
T Consensus 133 R~V~reEG~kfAr~h~~L----------FiE~SAkt~~~V~~~Feelve 171 (209)
T KOG0080|consen 133 RVVDREEGLKFARKHRCL----------FIECSAKTRENVQCCFEELVE 171 (209)
T ss_pred ccccHHHHHHHHHhhCcE----------EEEcchhhhccHHHHHHHHHH
Confidence 666666544443333222 267899999999888877755
No 26
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.73 E-value=3.7e-17 Score=175.51 Aligned_cols=156 Identities=22% Similarity=0.399 Sum_probs=114.7
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEE----e----------cCceEEE
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL----K----------DEDTRIS 555 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~----~----------~~~~~l~ 555 (1363)
.+|++++|++|||||||++++..+ +...+.| |.|++.... . +..+.+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFIT-----------------TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQ 66 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCC-----------------ccceEEEEEEEEEcCccccccccCCCEEEEE
Confidence 479999999999999999999876 5443333 333332211 1 3457899
Q ss_pred EEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEe
Q 000665 556 IWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLT 635 (1363)
Q Consensus 556 iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgT 635 (1363)
+||++||+.|+.+++.+++ ...++++|||+++ .+++ ..+..|+..++.+.. +..||+++|||
T Consensus 67 i~Dt~G~~~~~~~~~~~~~---~~~~~i~v~d~~~---------~~s~-~~~~~~~~~i~~~~~-----~~~~piiiv~n 128 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFR---DAMGFLLIFDLTN---------EQSF-LNVRNWMSQLQTHAY-----CENPDIVLCGN 128 (180)
T ss_pred EEeCCChHHHHHHHHHHhC---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcC-----CCCCcEEEEEe
Confidence 9999999999999999999 8999999999974 3344 556889999976431 23568999999
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 636 HYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 636 h~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
|+|+........++ .+.+..++. -+++++||+++.|++++++.|.+
T Consensus 129 K~Dl~~~~~v~~~~----~~~~~~~~~------~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 129 KADLEDQRQVSEEQ----AKALADKYG------IPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred CccchhcCccCHHH----HHHHHHHcC------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 99997543333222 233333332 14689999999999999998865
No 27
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.1e-17 Score=170.42 Aligned_cols=156 Identities=17% Similarity=0.303 Sum_probs=121.9
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEE----ecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL----KDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~----~~~~~~l~iWDfaGQe~y 565 (1363)
-.|++++|+++||||-|+.++..+ |+.. ..+|-|++..+. +++.++..|||+||||.|
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~-----------------SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERy 76 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLE-----------------SKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERY 76 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcc-----------------cccceeEEEEeeceeecCcEEEEeeecccchhhh
Confidence 479999999999999999999887 5432 245777777764 368899999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
+++++.|++ .+...+||||+++ ..++ +.+..||+.++.++...+ +|++||||+|+.+.+.+
T Consensus 77 rAitSaYYr---gAvGAllVYDITr---------~~Tf-env~rWL~ELRdhad~ni------vimLvGNK~DL~~lraV 137 (222)
T KOG0087|consen 77 RAITSAYYR---GAVGALLVYDITR---------RQTF-ENVERWLKELRDHADSNI------VIMLVGNKSDLNHLRAV 137 (222)
T ss_pred ccccchhhc---ccceeEEEEechh---------HHHH-HHHHHHHHHHHhcCCCCe------EEEEeecchhhhhcccc
Confidence 999999999 8888999999985 2344 588999999999886544 79999999999875544
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
..++. +.+.++..- .++.+|+.++.+++..|..+...
T Consensus 138 ~te~~----k~~Ae~~~l------~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 138 PTEDG----KAFAEKEGL------FFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred chhhh----HhHHHhcCc------eEEEecccccccHHHHHHHHHHH
Confidence 44433 222233211 34789999999999998766543
No 28
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.2e-17 Score=159.01 Aligned_cols=157 Identities=19% Similarity=0.319 Sum_probs=122.7
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe----cCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK----DEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~----~~~~~l~iWDfaGQe~y 565 (1363)
..|+.++|+..+||||++.+..++ |.. ...+|+||+.+--+ ++.+++.|||++|||.|
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~-----------------afvsTvGidFKvKTvyr~~kRiklQiwDTagqEry 83 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTS-----------------AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERY 83 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccccc-----------------ceeeeeeeeEEEeEeeecccEEEEEEEecccchhh
Confidence 369999999999999999999987 432 22468887754322 57899999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..+...+++ .+..|||+||+++ ++--..++.|...|+...-. ..|||+||||+|+-+++..
T Consensus 84 rtiTTayyR---gamgfiLmyDitN----------eeSf~svqdw~tqIktysw~------naqvilvgnKCDmd~eRvi 144 (193)
T KOG0093|consen 84 RTITTAYYR---GAMGFILMYDITN----------EESFNSVQDWITQIKTYSWD------NAQVILVGNKCDMDSERVI 144 (193)
T ss_pred hHHHHHHhh---ccceEEEEEecCC----------HHHHHHHHHHHHHheeeecc------CceEEEEecccCCccceee
Confidence 999999999 8999999999985 23337889999999874322 3489999999999766555
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
..++.....++|-- ..|+.|++..-+++.+|+.+...+
T Consensus 145 s~e~g~~l~~~LGf----------efFEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 145 SHERGRQLADQLGF----------EFFETSAKENINVKQVFERLVDII 182 (193)
T ss_pred eHHHHHHHHHHhCh----------HHhhhcccccccHHHHHHHHHHHH
Confidence 55554444444432 238899999999999999887644
No 29
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=2.9e-18 Score=231.14 Aligned_cols=276 Identities=14% Similarity=0.127 Sum_probs=170.3
Q ss_pred hhhCCCccEEEEecCCCCHHHHHHHHH-HhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHH
Q 000665 70 EKAHTSLKHLEFHSVEWEIEQMRILGL-LLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGAS 148 (1363)
Q Consensus 70 l~~~~~L~~L~Ls~~~i~~~~~~~L~~-~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~ 148 (1363)
+...+.|+.|+|++|.+... +.. .+..+++|+.|+|++|.++..-.. ...++|++|+|++|.++.
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~----ip~~~~~~l~~L~~L~Ls~n~l~~~~p~------~~l~~L~~L~Ls~n~~~~---- 154 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGP----IPDDIFTTSSSLRYLNLSNNNFTGSIPR------GSIPNLETLDLSNNMLSG---- 154 (968)
T ss_pred HhCCCCCCEEECCCCccCCc----CChHHhccCCCCCEEECcCCccccccCc------cccCCCCEEECcCCcccc----
Confidence 34457899999999976521 122 234778889999998887642110 134678888888888752
Q ss_pred HHHHHhccCCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcch
Q 000665 149 LLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKS 228 (1363)
Q Consensus 149 ~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~ 228 (1363)
.+...+..+++|+.|+|++|.+... ++..+...++|+.|+|++|.+... ++..+...++|+.|+|++|....
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~l~~- 226 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGK----IPNSLTNLTSLEFLTLASNQLVGQ---IPRELGQMKSLKWIYLGYNNLSG- 226 (968)
T ss_pred cCChHHhcCCCCCEEECccCccccc----CChhhhhCcCCCeeeccCCCCcCc---CChHHcCcCCccEEECcCCccCC-
Confidence 2334456677888888888877542 334455667788888888865432 34556677788888888774221
Q ss_pred hHHHhhcCCCCcceeeccCchhHH-HHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 000665 229 SKVVEFLPENGTLRIYRLDVSGSC-RVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGV 307 (1363)
Q Consensus 229 ~~l~~~L~~~~~L~~L~Ls~~g~~-~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~ 307 (1363)
.+...+..+++|+.++++.+... .++..+..+++|+.|+|++|+++.... ..+...++|++|+|++|.++..
T Consensus 227 -~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~-- 299 (968)
T PLN00113 227 -EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP----PSIFSLQKLISLDLSDNSLSGE-- 299 (968)
T ss_pred -cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc----hhHhhccCcCEEECcCCeeccC--
Confidence 23344556677777777766543 345566677777788887777754322 2334456777777777776532
Q ss_pred HHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceE
Q 000665 308 VYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVT 387 (1363)
Q Consensus 308 ~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~ 387 (1363)
++..+..+++|+.|++++|.+++.....+ ...++|+.|+|+ +|.++.. +...+..+++|+
T Consensus 300 --~p~~~~~l~~L~~L~l~~n~~~~~~~~~~------------~~l~~L~~L~L~--~n~l~~~----~p~~l~~~~~L~ 359 (968)
T PLN00113 300 --IPELVIQLQNLEILHLFSNNFTGKIPVAL------------TSLPRLQVLQLW--SNKFSGE----IPKNLGKHNNLT 359 (968)
T ss_pred --CChhHcCCCCCcEEECCCCccCCcCChhH------------hcCCCCCEEECc--CCCCcCc----CChHHhCCCCCc
Confidence 34445666777777777777765444333 234556666665 3454422 122334445566
Q ss_pred EEEecCC
Q 000665 388 QLGIYDD 394 (1363)
Q Consensus 388 ~L~Ls~N 394 (1363)
.|+|++|
T Consensus 360 ~L~Ls~n 366 (968)
T PLN00113 360 VLDLSTN 366 (968)
T ss_pred EEECCCC
Confidence 6666655
No 30
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.73 E-value=4.9e-17 Score=173.81 Aligned_cols=161 Identities=17% Similarity=0.295 Sum_probs=114.6
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|++|||||||++++..+ |...+.|+++. .....+ ...+..+++.+||++||+.|..+++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-------------~~~~~~-~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-------------NYSANV-MVDGKPVNLGLWDTAGQEDYDRLRP 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-------------eeEEEE-EECCEEEEEEEEECCCchhhhhhhh
Confidence 69999999999999999999977 65555554322 112222 2345678999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.|+. ...+||+|||+++ ++++.....+|+..+....+ ..|++|||||.|+..... ..+..
T Consensus 68 ~~~~---~~d~~ilv~d~~~---------~~sf~~~~~~~~~~~~~~~~-------~~piilvgnK~Dl~~~~~-~~~~~ 127 (174)
T cd01871 68 LSYP---QTDVFLICFSLVS---------PASFENVRAKWYPEVRHHCP-------NTPIILVGTKLDLRDDKD-TIEKL 127 (174)
T ss_pred hhcC---CCCEEEEEEECCC---------HHHHHHHHHHHHHHHHHhCC-------CCCEEEEeeChhhccChh-hHHHH
Confidence 9999 8999999999984 45564444689998876432 348999999999854221 11000
Q ss_pred ---------HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 ---------VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ---------~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+..+.+.+++.. ..++++||+++.|++++++.+.+
T Consensus 128 ~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 128 KEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred hhccCCCCCHHHHHHHHHHcCC-----cEEEEecccccCCHHHHHHHHHH
Confidence 0112233334321 15689999999999999988764
No 31
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.73 E-value=1.6e-17 Score=161.01 Aligned_cols=158 Identities=18% Similarity=0.331 Sum_probs=121.8
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|++|+|||||+.++..+ |+++|..|+|. ..-|....+.+..+++.|||+||||.|..+..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGv-------------DfkirTv~i~G~~VkLqIwDtAGqErFrtits 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGV-------------DFKIRTVDINGDRVKLQIWDTAGQERFRTITS 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeee-------------eEEEEEeecCCcEEEEEEeecccHHHHHHHHH
Confidence 58899999999999999999988 88888766553 23333444457899999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
-|++ ...+.++|||+++ .+.+ ..+..||+.|+++.+ .-|-++||||.|....+.+..+++
T Consensus 76 tyyr---gthgv~vVYDVTn---------~ESF-~Nv~rWLeei~~ncd-------sv~~vLVGNK~d~~~RrvV~t~dA 135 (198)
T KOG0079|consen 76 TYYR---GTHGVIVVYDVTN---------GESF-NNVKRWLEEIRNNCD-------SVPKVLVGNKNDDPERRVVDTEDA 135 (198)
T ss_pred HHcc---CCceEEEEEECcc---------hhhh-HhHHHHHHHHHhcCc-------cccceecccCCCCccceeeehHHH
Confidence 9999 7889999999985 2333 677999999999655 236799999999976544443333
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
.+... . .. -.+|+.|+++..+++..|+-|.+.
T Consensus 136 r~~A~----~----mg--ie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 136 RAFAL----Q----MG--IELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred HHHHH----h----cC--chheehhhhhcccchHHHHHHHHH
Confidence 22211 1 11 246999999999999999988763
No 32
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.73 E-value=6.2e-17 Score=178.70 Aligned_cols=164 Identities=18% Similarity=0.308 Sum_probs=116.1
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
++|++++|++|||||||++++.++ |...+.||++. ..... ...++..+.|.+||++||+.|..++
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~-------------~~~~~-~~~~~~~v~L~iwDt~G~e~~~~l~ 66 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFE-------------NYTAS-FEIDKRRIELNMWDTSGSSYYDNVR 66 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccc-------------ceEEE-EEECCEEEEEEEEeCCCcHHHHHHh
Confidence 379999999999999999999986 66556565432 11111 1234567899999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhH-
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQ- 648 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~- 648 (1363)
+.++. ...++|+|||+++ .++++.....|...++...+ ..|++|||||.|+........+
T Consensus 67 ~~~~~---~~d~illvfdis~---------~~Sf~~i~~~w~~~~~~~~~-------~~piiLVgnK~DL~~~~~~~~~~ 127 (222)
T cd04173 67 PLAYP---DSDAVLICFDISR---------PETLDSVLKKWQGETQEFCP-------NAKVVLVGCKLDMRTDLATLREL 127 (222)
T ss_pred HHhcc---CCCEEEEEEECCC---------HHHHHHHHHHHHHHHHhhCC-------CCCEEEEEECcccccchhhhhhh
Confidence 99999 8999999999984 56676666889988876433 3479999999998543210000
Q ss_pred -------HHHHHHHHHHHHhccccCCCCcEEEEcCCCCC-ChhHHHHHHHHH
Q 000665 649 -------LTVSSIQRLKDKFQGFVDFYPTVFTIDARSSA-SVTKLTHHIRKT 692 (1363)
Q Consensus 649 -------~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~-~i~~L~~~L~~~ 692 (1363)
-..+..+.+.++++. ..++++||+++. ||+++|......
T Consensus 128 ~~~~~~pIs~e~g~~~ak~~~~-----~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 128 SKQRLIPVTHEQGTVLAKQVGA-----VSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred hhccCCccCHHHHHHHHHHcCC-----CEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 000112333333321 146899999987 599999876653
No 33
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=5.9e-17 Score=177.44 Aligned_cols=160 Identities=17% Similarity=0.283 Sum_probs=115.1
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceE----EEEEe-cCceEEEEEecCCchhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMK----IKTLK-DEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~----i~~~~-~~~~~l~iWDfaGQe~y 565 (1363)
+|++++|++|||||||++++..+ +...+.| |.|.+ ...+. +..+.+.+||++||+.|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~-----------------t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~ 63 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKA-----------------TIGVDFALKVIEWDPNTVVRLQLWDIAGQERF 63 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-----------------ceeEEEEEEEEEECCCCEEEEEEEECCCchhh
Confidence 48999999999999999999976 4433333 44433 22343 56789999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..+++.|++ ...++++|||+++ ++.+ +.+..|+..+....... .....|++|||||.|+...+..
T Consensus 64 ~~~~~~~~~---~a~~~ilv~D~t~---------~~s~-~~~~~~~~~i~~~~~~~--~~~~~piilv~NK~Dl~~~~~~ 128 (201)
T cd04107 64 GGMTRVYYR---GAVGAIIVFDVTR---------PSTF-EAVLKWKADLDSKVTLP--NGEPIPCLLLANKCDLKKRLAK 128 (201)
T ss_pred hhhHHHHhC---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhhccc--CCCCCcEEEEEECCCccccccc
Confidence 999999999 8999999999974 3444 55689999887643211 1224579999999999643323
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
..+++ +.+...+. . ..++.+||+++.|++++++.|.+.
T Consensus 129 ~~~~~----~~~~~~~~-~----~~~~e~Sak~~~~v~e~f~~l~~~ 166 (201)
T cd04107 129 DGEQM----DQFCKENG-F----IGWFETSAKEGINIEEAMRFLVKN 166 (201)
T ss_pred CHHHH----HHHHHHcC-C----ceEEEEeCCCCCCHHHHHHHHHHH
Confidence 32222 22322322 1 256899999999999999988763
No 34
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.72 E-value=6.1e-17 Score=172.41 Aligned_cols=159 Identities=18% Similarity=0.305 Sum_probs=114.1
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
.|++++|++|+|||||++++.++ |...+.|| .|.+.. ...+..+.+++||++||+.|.
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t-----------------~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKAT-----------------IGVDFEMERFEILGVPFSLQLWDTAGQERFK 63 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-----------------eeeEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 38999999999999999999987 65555444 333322 223557899999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhh-chhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSN-SRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~-~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
.+++.+++ ...++++|||+++ .+.+ ..+..|+..+... .+. .||+++||||.|+......
T Consensus 64 ~~~~~~~~---~ad~~ilv~d~~~---------~~s~-~~~~~~~~~~~~~~~~~------~~~iilVgnK~Dl~~~~~~ 124 (170)
T cd04108 64 CIASTYYR---GAQAIIIVFDLTD---------VASL-EHTRQWLEDALKENDPS------SVLLFLVGTKKDLSSPAQY 124 (170)
T ss_pred hhHHHHhc---CCCEEEEEEECcC---------HHHH-HHHHHHHHHHHHhcCCC------CCeEEEEEEChhcCccccc
Confidence 99999999 8999999999974 2333 5567899988653 222 4689999999998543221
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSR 694 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~ 694 (1363)
.. .....+.+..+++ ..++.+|++++.|+++++..|.....
T Consensus 125 ~~--~~~~~~~~~~~~~------~~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 125 AL--MEQDAIKLAAEMQ------AEYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred cc--cHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 10 0111222333332 24688999999999999998876543
No 35
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.72 E-value=7e-17 Score=171.07 Aligned_cols=154 Identities=16% Similarity=0.261 Sum_probs=112.8
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|++|+|||||++++..+ |...+. .|.|.+.. ...+..+++.+||++||+.|.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~-----------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 65 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP-----------------HTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----------------cccceeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 69999999999999999999876 432222 24444432 234567899999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
...+.+++ ...++++|||+++ ++++ +.+..|+..+..... ..+|+++||||+|+.......
T Consensus 66 ~~~~~~~~---~~~~~ilv~d~~~---------~~s~-~~~~~~~~~~~~~~~------~~~~iiiv~nK~Dl~~~~~~~ 126 (166)
T cd04122 66 AVTRSYYR---GAAGALMVYDITR---------RSTY-NHLSSWLTDARNLTN------PNTVIFLIGNKADLEAQRDVT 126 (166)
T ss_pred HHHHHHhc---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCC------CCCeEEEEEECcccccccCcC
Confidence 99999999 8999999999984 3343 667899998865322 135799999999997544333
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+++ +++...+. -.++.+||+++.|+++++..+..
T Consensus 127 ~~~~----~~~~~~~~------~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 127 YEEA----KQFADENG------LLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred HHHH----HHHHHHcC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 2322 22222221 25789999999999999887765
No 36
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.72 E-value=8.2e-17 Score=170.07 Aligned_cols=159 Identities=15% Similarity=0.283 Sum_probs=114.2
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEE----EEEecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKI----KTLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i----~~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|.+|||||||++++.+. +...+.| |.|++. ..+.+..+.+++||++|++.|.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLP-----------------TIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL 63 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----------------ccceeEEEEEEEECCeEEEEEEEECCccHHHH
Confidence 48999999999999999999977 4333322 444433 2334567899999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
.+++.|++ ..+++++|||+++ .+++ +.+..|+..+.....+.. ....+||++|+||+|+.......
T Consensus 64 ~~~~~~~~---~~d~~ilv~D~~~---------~~s~-~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~ 129 (168)
T cd04119 64 EVRNEFYK---DTQGVLLVYDVTD---------RQSF-EALDSWLKEMKQEGGPHG-NMENIVVVVCANKIDLTKHRAVS 129 (168)
T ss_pred HHHHHHhc---cCCEEEEEEECCC---------HHHH-HhHHHHHHHHHHhccccc-cCCCceEEEEEEchhcccccccC
Confidence 99999999 8999999999984 3333 567899999876432210 12246899999999996432222
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.++. +.+...+. -.+|.+||+++.|++++++.|.+
T Consensus 130 ~~~~----~~~~~~~~------~~~~~~Sa~~~~gi~~l~~~l~~ 164 (168)
T cd04119 130 EDEG----RLWAESKG------FKYFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred HHHH----HHHHHHcC------CeEEEEECCCCCCHHHHHHHHHH
Confidence 2211 22222221 24689999999999999998865
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.72 E-value=1e-16 Score=169.60 Aligned_cols=154 Identities=19% Similarity=0.378 Sum_probs=113.1
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE--EE--ecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK--TL--KDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~--~~--~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|.+|||||||++++.++ +...+.| |.|++.. +. .++.+.+.+||++|++.|.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~ 64 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVS-----------------TVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-----------------ceeeEEEEEEEEECCEEEEEEEEECCChHHHH
Confidence 69999999999999999999976 4333322 4443332 22 2456899999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
.++..+++ ...++++|||+++ .+++ +.+..|+..+....+. .+|+++||||+|+...+...
T Consensus 65 ~~~~~~~~---~~~~~l~v~d~~~---------~~s~-~~~~~~~~~i~~~~~~------~~piivv~nK~Dl~~~~~~~ 125 (165)
T cd01865 65 TITTAYYR---GAMGFILMYDITN---------EESF-NAVQDWSTQIKTYSWD------NAQVILVGNKCDMEDERVVS 125 (165)
T ss_pred HHHHHHcc---CCcEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCCC------CCCEEEEEECcccCcccccC
Confidence 99999999 8999999999874 3444 5778999998764322 35799999999996543322
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.++. +.+...++ -++|.+||+++.|++++++.|.+
T Consensus 126 ~~~~----~~~~~~~~------~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 126 SERG----RQLADQLG------FEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred HHHH----HHHHHHcC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 2222 22332321 14689999999999999998865
No 38
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.71 E-value=1.1e-16 Score=177.22 Aligned_cols=159 Identities=16% Similarity=0.281 Sum_probs=116.5
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE--E--ec-CceEEEEEecCCchhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT--L--KD-EDTRISIWNLAGQHEF 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~--~--~~-~~~~l~iWDfaGQe~y 565 (1363)
+|++++|++|||||||+++|.++ |...+. .|.|+++.. + .+ ..+++.|||++||+.|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~-----------------~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~ 63 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYK-----------------QTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG 63 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCC-----------------CceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH
Confidence 48999999999999999999976 443333 355555432 2 22 4689999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
+.+++.|+. ...++++|||+++ ++.+ +.+..|+..+....... ...||+++||||+|+...+..
T Consensus 64 ~~l~~~~~~---~ad~iilV~D~t~---------~~s~-~~~~~w~~~l~~~~~~~---~~~~piilVgNK~DL~~~~~v 127 (215)
T cd04109 64 GKMLDKYIY---GAHAVFLVYDVTN---------SQSF-ENLEDWYSMVRKVLKSS---ETQPLVVLVGNKTDLEHNRTV 127 (215)
T ss_pred HHHHHHHhh---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcccc---CCCceEEEEEECccccccccc
Confidence 999999999 8999999999984 3444 66688999998744321 235689999999999644333
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
..++ .+.+...++ -.++.+||++|.|++++++.|.+.+
T Consensus 128 ~~~~----~~~~~~~~~------~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 128 KDDK----HARFAQANG------MESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred CHHH----HHHHHHHcC------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3222 223333332 1458899999999999999987643
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.71 E-value=1e-16 Score=169.04 Aligned_cols=154 Identities=17% Similarity=0.330 Sum_probs=112.1
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE--E--EecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK--T--LKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~--~--~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|++|+|||||++++..+ |...+. +|.|.+.. . ..+..+.+.+||++||+.|.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~-----------------~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~ 63 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHI-----------------STIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ 63 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCC-----------------CceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH
Confidence 48999999999999999999876 433222 35554432 2 22456889999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
...+.++. ...++++|||+++ .+.+ +.+..|+..+....+. ..|+++||||.|+.......
T Consensus 64 ~~~~~~~~---~~~~~i~v~d~~~---------~~sf-~~~~~~~~~~~~~~~~------~~~iilvgnK~Dl~~~~~v~ 124 (161)
T cd04117 64 TITKQYYR---RAQGIFLVYDISS---------ERSY-QHIMKWVSDVDEYAPE------GVQKILIGNKADEEQKRQVG 124 (161)
T ss_pred hhHHHHhc---CCcEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCCC------CCeEEEEEECcccccccCCC
Confidence 99988888 8899999999984 2344 5568899988765432 34899999999986544333
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.++. +.+.+.+. -+++++|++++.|++++++.|.+
T Consensus 125 ~~~~----~~~~~~~~------~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 125 DEQG----NKLAKEYG------MDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred HHHH----HHHHHHcC------CEEEEEeCCCCCCHHHHHHHHHh
Confidence 2222 22222221 24689999999999999998864
No 40
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.71 E-value=5.3e-18 Score=205.53 Aligned_cols=364 Identities=20% Similarity=0.252 Sum_probs=237.3
Q ss_pred ccEEEEecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcC-CCccEEEeecCCCCHHHHHHHHHHh
Q 000665 76 LKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRN-GVIKEVMFTESGIKNAGASLLASAL 154 (1363)
Q Consensus 76 L~~L~Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~-~~L~~L~Ls~n~I~~~g~~~L~~~L 154 (1363)
+..|.|.+|.+.+.++..+++++..+.+|+.|+|++|.+++.|...++..+..+ +.++.|.+..|.++..|+..++..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556667777777777777777777777777777777777777777777777665 5677777777777777777777777
Q ss_pred ccCCCccEEEccCCCCChhhHHHHHHHHhc----CCCeeEEEccCCCCC-ChHHHHHHHHHhCCC-ceEEEccCCCCcch
Q 000665 155 KVNDTLEELQIWEDSIGSKGAEELSKMIEA----NSTLKSLTIFDSSSL-TATPLISAVLARNRA-MEVHVWSGENGEKS 228 (1363)
Q Consensus 155 ~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~----~~~L~~L~Ls~n~~~-~~~~~l~~~l~~~~~-L~~L~Ls~n~~~~~ 228 (1363)
..+.+|+.++++.|.+...|...++..+.. .++++.|++++|... ..+..+...+...+. +..|+++.|
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n----- 243 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN----- 243 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc-----
Confidence 777777777777777777777777777764 566777777776542 344445555555544 555665555
Q ss_pred hHHHhhcCCCCcceeeccCchhHHHHHHHhcCC-CcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 000665 229 SKVVEFLPENGTLRIYRLDVSGSCRVACSLGCN-TTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGV 307 (1363)
Q Consensus 229 ~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~-~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~ 307 (1363)
.+++.|+..+...+... .+++.++++.|.|++.+...+++.+..+..+++|.|++|.+++.++
T Consensus 244 ----------------~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 244 ----------------KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred ----------------CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 24445566666655555 5666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCCCCEEEccCCCCCHhh-HHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcc-
Q 000665 308 VYVAAGLFKNRSLESLYLHGNWFSGVG-VEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNET- 385 (1363)
Q Consensus 308 ~~L~~~L~~~~~L~~LdLs~N~l~~~g-~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~- 385 (1363)
..+...+.....+..+-+.++.....+ ...+..+. .....+.....+ .+...+++...+......-..
T Consensus 308 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 377 (478)
T KOG4308|consen 308 ELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEAD--------AQRQLLSELGIS--GNRVGEEGLALLVLAKSNPKSE 377 (478)
T ss_pred HHHHHHhhhcccchhhhccccCccchhHHHHHHHHH--------HHhhhhHHHHhh--hccchHHHHHHHhhhhcccCcc
Confidence 666666666666666666644433333 22222222 111122222222 345555555555444433333
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCCCCchHHHH
Q 000665 386 VTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNSGKADGIY 465 (1363)
Q Consensus 386 L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~~g~~~~i~ 465 (1363)
+..|++..+ .+.+.+...++..+..+..+..++++.|. ..+++...+.+....+-.++.++++.|+++..| +....
T Consensus 378 ~~~l~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~l~~n~--~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 453 (478)
T KOG4308|consen 378 LLRLSLNSQ-VIEGRGALRLAAQLASNEKLEILDLSLNS--LHDEGAEVLTEQLSRNGSLKALRLSRNPITALG-TEELQ 453 (478)
T ss_pred cchhhhhcc-ccccHHHHHhhhhhhhcchhhhhhhhcCc--cchhhHHHHHHhhhhcccchhhhhccChhhhcc-hHHHH
Confidence 666777776 56777777777777778888888888876 556677777777777778888888888888888 67777
Q ss_pred HHHhccCCC
Q 000665 466 QRLGQKGRS 474 (1363)
Q Consensus 466 ~~l~~~~~l 474 (1363)
+....+..+
T Consensus 454 ~~~~~~~~~ 462 (478)
T KOG4308|consen 454 RALALNPGI 462 (478)
T ss_pred HHHhcCCCc
Confidence 776666544
No 41
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=6.3e-17 Score=157.56 Aligned_cols=154 Identities=16% Similarity=0.291 Sum_probs=117.0
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceE----EEEEecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMK----IKTLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~----i~~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|+++.|+.|.|||+|++.+... |.... ..|.||+ |..+-++.+++.|||+||||.|+
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDds-----------------sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFR 72 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDS-----------------SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFR 72 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccc-----------------cceeeeeecceeeeecCcEEEEEEeecccHHHHH
Confidence 69999999999999999999987 44322 2355554 45555789999999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
+..+-|++ .++..+||||++.+ +.+ +.+..||..+++.++..+ .|+++|||.|+-.++++.
T Consensus 73 SVtRsYYR---GAAGAlLVYD~Tsr---------dsf-naLtnWL~DaR~lAs~nI------vviL~GnKkDL~~~R~Vt 133 (214)
T KOG0086|consen 73 SVTRSYYR---GAAGALLVYDITSR---------DSF-NALTNWLTDARTLASPNI------VVILCGNKKDLDPEREVT 133 (214)
T ss_pred HHHHHHhc---cccceEEEEeccch---------hhH-HHHHHHHHHHHhhCCCcE------EEEEeCChhhcChhhhhh
Confidence 99999999 89999999999852 333 778999999999877655 789999999996554443
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..++ .+|..--++ ...+.|+.+|.++++-|-...+
T Consensus 134 flEA--------s~FaqEnel--~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 134 FLEA--------SRFAQENEL--MFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred HHHH--------Hhhhcccce--eeeeecccccccHHHHHHHHHH
Confidence 3222 233322122 3467899999999987755444
No 42
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.9e-18 Score=166.34 Aligned_cols=155 Identities=22% Similarity=0.394 Sum_probs=120.2
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe-------------cCceEEEEE
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-------------DEDTRISIW 557 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-------------~~~~~l~iW 557 (1363)
+|++.+|++||||||++.+...+ |+... .+|+||+..+-. +..+.+.+|
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qF-----------------IsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlW 72 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQF-----------------ISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLW 72 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCccccee-----------------EEEeecccccceEEEeccCCCCCCcceEEEEeee
Confidence 58899999999999999999877 55432 346776655422 235788999
Q ss_pred ecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEecc
Q 000665 558 NLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHY 637 (1363)
Q Consensus 558 DfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~ 637 (1363)
|+||||.|++....|++ .+..|+|+||++. .+.+ -.+..||..++.++ .|..|-|++.|||+
T Consensus 73 DTAGQERFRSLTTAFfR---DAMGFlLiFDlT~---------eqSF-LnvrnWlSQL~~hA-----YcE~PDivlcGNK~ 134 (219)
T KOG0081|consen 73 DTAGQERFRSLTTAFFR---DAMGFLLIFDLTS---------EQSF-LNVRNWLSQLQTHA-----YCENPDIVLCGNKA 134 (219)
T ss_pred ccccHHHHHHHHHHHHH---hhccceEEEeccc---------hHHH-HHHHHHHHHHHHhh-----ccCCCCEEEEcCcc
Confidence 99999999999999999 8999999999984 2333 56689999999854 68899999999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 638 DKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 638 D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
|+...+.+..+++ ..+..+|+ -+.|+.|+.+|.+|++-.+.|..
T Consensus 135 DL~~~R~Vs~~qa----~~La~kyg------lPYfETSA~tg~Nv~kave~Lld 178 (219)
T KOG0081|consen 135 DLEDQRVVSEDQA----AALADKYG------LPYFETSACTGTNVEKAVELLLD 178 (219)
T ss_pred chhhhhhhhHHHH----HHHHHHhC------CCeeeeccccCcCHHHHHHHHHH
Confidence 9976554444333 44556664 25699999999999887776655
No 43
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.71 E-value=1.4e-16 Score=169.00 Aligned_cols=156 Identities=18% Similarity=0.355 Sum_probs=114.2
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEE----EEEecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKI----KTLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i----~~~~~~~~~l~iWDfaGQe~y 565 (1363)
.+|++++|.+|+|||||++++.++ |...+.| |.|++. ..+.+..+.+.+||++||+.|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~-----------------t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~ 65 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFIS-----------------TIGIDFKIRTIELDGKKIKLQIWDTAGQERF 65 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCccccc-----------------CccceEEEEEEEECCEEEEEEEEeCCchHHH
Confidence 479999999999999999999976 5443333 333322 223455689999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
......++. ...++++|||+++ .+.+ ..+..|+..+....+. ..|+++||||.|+.+....
T Consensus 66 ~~~~~~~~~---~ad~~i~v~d~~~---------~~s~-~~~~~~~~~i~~~~~~------~~p~iiv~nK~Dl~~~~~~ 126 (167)
T cd01867 66 RTITTAYYR---GAMGIILVYDITD---------EKSF-ENIRNWMRNIEEHASE------DVERMLVGNKCDMEEKRVV 126 (167)
T ss_pred HHHHHHHhC---CCCEEEEEEECcC---------HHHH-HhHHHHHHHHHHhCCC------CCcEEEEEECcccccccCC
Confidence 999999999 8999999999974 3444 5678899998764322 3479999999999754333
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
..++. +.+.+.+. -+++.+||+++.|++++++.|.+.
T Consensus 127 ~~~~~----~~~~~~~~------~~~~~~Sa~~~~~v~~~~~~i~~~ 163 (167)
T cd01867 127 SKEEG----EALADEYG------IKFLETSAKANINVEEAFFTLAKD 163 (167)
T ss_pred CHHHH----HHHHHHcC------CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 32222 12222221 246899999999999999888764
No 44
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.71 E-value=2e-16 Score=171.54 Aligned_cols=162 Identities=18% Similarity=0.253 Sum_probs=111.0
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDL 571 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~ 571 (1363)
|++++|++|+|||||++++.++ |...+.||++. . -.......+..+.+.+||++||+.|..+++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~-------------~-~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~ 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFE-------------N-YVHDIFVDGLHIELSLWDTAGQEEFDRLRSL 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCccee-------------e-eEEEEEECCEEEEEEEEECCCChhccccccc
Confidence 8999999999999999999977 44433343321 0 0111123355689999999999999999999
Q ss_pred ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH--
Q 000665 572 MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL-- 649 (1363)
Q Consensus 572 Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~-- 649 (1363)
++. ...++++|||+++ .+.++....+|+..+....+ ..|++|||||.|+..........
T Consensus 68 ~~~---~a~~~ilv~dv~~---------~~sf~~~~~~~~~~i~~~~~-------~~piilvgNK~Dl~~~~~~~~~~~~ 128 (189)
T cd04134 68 SYA---DTDVIMLCFSVDS---------PDSLENVESKWLGEIREHCP-------GVKLVLVALKCDLREARNERDDLQR 128 (189)
T ss_pred ccc---CCCEEEEEEECCC---------HHHHHHHHHHHHHHHHHhCC-------CCCEEEEEEChhhccChhhHHHHhh
Confidence 998 8899999999984 45553334579999986432 34799999999996543211000
Q ss_pred -----H-HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 650 -----T-VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 650 -----~-~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
. .+....+..++.. -.+|++||+++.|++++|..|.+.
T Consensus 129 ~~~~~v~~~~~~~~~~~~~~-----~~~~e~SAk~~~~v~e~f~~l~~~ 172 (189)
T cd04134 129 YGKHTISYEEGLAVAKRINA-----LRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred ccCCCCCHHHHHHHHHHcCC-----CEEEEccCCcCCCHHHHHHHHHHH
Confidence 0 0001112222211 146899999999999999888753
No 45
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=2.4e-16 Score=166.79 Aligned_cols=156 Identities=18% Similarity=0.288 Sum_probs=113.0
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE--E--EecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK--T--LKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~--~--~~~~~~~l~iWDfaGQe~y 565 (1363)
..|++++|++|+|||||++++..+ +...+ ..|.|++.. . +.+..+.+.+||++||+.|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 65 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ-----------------GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF 65 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccC-----------------CCccceEEEEEEEEECCEEEEEEEEECCChHHH
Confidence 479999999999999999999865 33221 234454332 2 2344579999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..+++.+++ ...++++|||+++ ++.+ +.+..|+..+....+ ...|+++||||+|+...+..
T Consensus 66 ~~~~~~~~~---~~d~~llv~d~~~---------~~s~-~~~~~~~~~i~~~~~------~~~p~ivv~nK~Dl~~~~~~ 126 (165)
T cd01864 66 RTITQSYYR---SANGAIIAYDITR---------RSSF-ESVPHWIEEVEKYGA------SNVVLLLIGNKCDLEEQREV 126 (165)
T ss_pred HHHHHHHhc---cCCEEEEEEECcC---------HHHH-HhHHHHHHHHHHhCC------CCCcEEEEEECccccccccc
Confidence 999999999 8999999999974 3333 567899999976422 23479999999999754333
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..+.+ ..+.+.+.. ..++++||+++.|++++++.|.+
T Consensus 127 ~~~~~----~~~~~~~~~-----~~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 127 LFEEA----CTLAEKNGM-----LAVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred CHHHH----HHHHHHcCC-----cEEEEEECCCCCCHHHHHHHHHH
Confidence 22222 233333321 24689999999999999988764
No 46
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.70 E-value=7.4e-17 Score=169.85 Aligned_cols=154 Identities=19% Similarity=0.395 Sum_probs=117.4
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEE----ecCceEEEEEecCCchhhhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL----KDEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~----~~~~~~l~iWDfaGQe~y~~ 567 (1363)
|++++|++++|||||++++.++ |...+. +|.|++.... .+..+.+.+||++||+.|..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~-----------------~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 63 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYI-----------------PTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDS 63 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSE-----------------TTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccc-----------------cccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999987 443332 3555554433 25788999999999999999
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
+++.+++ ...++++|||+++ .+++ +.+..|+..|....+. .+|++|||||.|.........
T Consensus 64 ~~~~~~~---~~~~~ii~fd~~~---------~~S~-~~~~~~~~~i~~~~~~------~~~iivvg~K~D~~~~~~v~~ 124 (162)
T PF00071_consen 64 LRDIFYR---NSDAIIIVFDVTD---------EESF-ENLKKWLEEIQKYKPE------DIPIIVVGNKSDLSDEREVSV 124 (162)
T ss_dssp HHHHHHT---TESEEEEEEETTB---------HHHH-HTHHHHHHHHHHHSTT------TSEEEEEEETTTGGGGSSSCH
T ss_pred ccccccc---ccccccccccccc---------cccc-cccccccccccccccc------cccceeeeccccccccccchh
Confidence 9999999 8999999999974 3444 6678999999986552 458999999999875333333
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
+++ +.+..++. ..++.+|++++.++.+++..+.+.
T Consensus 125 ~~~----~~~~~~~~------~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 125 EEA----QEFAKELG------VPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp HHH----HHHHHHTT------SEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred hHH----HHHHHHhC------CEEEEEECCCCCCHHHHHHHHHHH
Confidence 332 33333332 256899999999999998887653
No 47
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.70 E-value=2.3e-16 Score=171.51 Aligned_cols=158 Identities=17% Similarity=0.341 Sum_probs=111.5
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCC-CCCcceeecccccccccCccCCcceE----EEEEecCceEEEEEecCCchhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSS-SKLPYIEQVRTLVNPVEQAVRPVGMK----IKTLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~-~~~~t~~~~~~~~~p~~~~~~T~Gi~----i~~~~~~~~~l~iWDfaGQe~y 565 (1363)
+|++++|.+|||||||++++..+ +.. .+.| |.|.. .....+..+.+.+||++|++.|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 63 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQN-----------------TIGAAFVAKRMVVGERVVTLGIWDTAGSERY 63 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCccc-----------------ceeeEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 48999999999999999999976 331 1222 34422 2334456788999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..+++.|+. ...++++|||+++ .+.+ +.+..|+..+....+ ..||++||||+|+......
T Consensus 64 ~~~~~~~~~---~~d~iilv~d~~~---------~~s~-~~~~~~~~~i~~~~~-------~~piilv~nK~Dl~~~~~~ 123 (193)
T cd04118 64 EAMSRIYYR---GAKAAIVCYDLTD---------SSSF-ERAKFWVKELQNLEE-------HCKIYLCGTKSDLIEQDRS 123 (193)
T ss_pred hhhhHhhcC---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHhcCC-------CCCEEEEEEcccccccccc
Confidence 999999998 8999999999974 3334 556889999876432 2379999999998643211
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
..+......+.+...+. ..++.+||+++.|++++++.|.+.
T Consensus 124 ~~~v~~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~~i~~~ 164 (193)
T cd04118 124 LRQVDFHDVQDFADEIK------AQHFETSSKTGQNVDELFQKVAED 164 (193)
T ss_pred cCccCHHHHHHHHHHcC------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 11100011222222321 246899999999999999988763
No 48
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.70 E-value=2.7e-16 Score=171.22 Aligned_cols=159 Identities=15% Similarity=0.247 Sum_probs=105.1
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe-----cCceEEEEEecCCchhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-----DEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-----~~~~~l~iWDfaGQe~y 565 (1363)
+|++++|++|||||||++++..+ |...+.||++. +..+...++. +..+.+.|||++||+.|
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~-------------~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~ 67 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGC-------------SVDVKHHTYKEGTPEEKTFFVELWDVGGSESV 67 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceee-------------eEEEEEEEEcCCCCCCcEEEEEEEecCCchhH
Confidence 48999999999999999999987 54433343321 1111112221 35689999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhh------------h-ccCCCeEEE
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAV------------Q-QCMLPNVTV 632 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av------------~-~~~~p~Vil 632 (1363)
+.+++.|++ ...++|+|||+++ .+++ +.+..|+..|..+..... . .....||+|
T Consensus 68 ~~l~~~~yr---~ad~iIlVyDvtn---------~~Sf-~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~Piil 134 (202)
T cd04102 68 KSTRAVFYN---QVNGIILVHDLTN---------RKSS-QNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLV 134 (202)
T ss_pred HHHHHHHhC---cCCEEEEEEECcC---------hHHH-HHHHHHHHHHHHhhccccccccccccccccccCCCCceEEE
Confidence 999999999 8999999999985 3344 567899999976432100 0 112468999
Q ss_pred EEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCCh
Q 000665 633 VLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASV 682 (1363)
Q Consensus 633 VgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i 682 (1363)
||||.|+...+.............+.+++. -+.+.++|+++..+
T Consensus 135 VGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~------~~~i~~~c~~~~~~ 178 (202)
T cd04102 135 IGTKLDQIPEKESSGNLVLTARGFVAEQGN------AEEINLNCTNGRLL 178 (202)
T ss_pred EEECccchhhcccchHHHhhHhhhHHHhcC------CceEEEecCCcccc
Confidence 999999965432222211111233333332 23467899987543
No 49
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.70 E-value=2.1e-16 Score=170.79 Aligned_cols=163 Identities=17% Similarity=0.237 Sum_probs=112.0
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCchhhhhcc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQe~y~~th 569 (1363)
+|++++|++|+|||||++++.++ +...+.|+++. .. ....... +..+.+.+||++||+.|..++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~-------------~~-~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFE-------------NY-VTNIQGPNGKIIELALWDTAGQEEYDRLR 66 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeee-------------ee-EEEEEecCCcEEEEEEEECCCchhHHHHH
Confidence 48999999999999999999977 54444443321 11 1111122 457899999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
+.++. ...++++|||+++ .++++.....|+..+....+ ..|+++||||.|+..........
T Consensus 67 ~~~~~---~ad~ii~v~d~~~---------~~s~~~~~~~~~~~~~~~~~-------~~piilv~nK~Dl~~~~~~~~~v 127 (187)
T cd04132 67 PLSYP---DVDVLLICYAVDN---------PTSLDNVEDKWFPEVNHFCP-------GTPIMLVGLKTDLRKDKNLDRKV 127 (187)
T ss_pred HHhCC---CCCEEEEEEECCC---------HHHHHHHHHHHHHHHHHhCC-------CCCEEEEEeChhhhhCccccCCc
Confidence 99999 8999999999974 34554445679988865322 34799999999986432111000
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
.....+++...+.. ..+|.+||+++.|++++++.+...
T Consensus 128 ~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~~l~~~ 165 (187)
T cd04132 128 TPAQAESVAKKQGA-----FAYLECSAKTMENVEEVFDTAIEE 165 (187)
T ss_pred CHHHHHHHHHHcCC-----cEEEEccCCCCCCHHHHHHHHHHH
Confidence 00112333333321 256899999999999999888763
No 50
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.70 E-value=1.7e-16 Score=166.99 Aligned_cols=153 Identities=21% Similarity=0.396 Sum_probs=113.0
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----Ee--cCceEEEEEecCCchh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LK--DEDTRISIWNLAGQHE 564 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~--~~~~~l~iWDfaGQe~ 564 (1363)
+|++++|.+++|||||++++.++ +...+ .+|.|.++.. +. +..+++.+||++||+.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 63 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDY-----------------KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE 63 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH
Confidence 48999999999999999999976 33222 2344544422 22 4578999999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|..+++.|++ ...++++|||+++ .+.+ ..+..|+..+....+ ..|+++|+||.|+.....
T Consensus 64 ~~~~~~~~~~---~~~~~v~v~d~~~---------~~s~-~~l~~~~~~~~~~~~-------~~p~iiv~nK~Dl~~~~~ 123 (162)
T cd04106 64 FDAITKAYYR---GAQACILVFSTTD---------RESF-EAIESWKEKVEAECG-------DIPMVLVQTKIDLLDQAV 123 (162)
T ss_pred HHHhHHHHhc---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCC-------CCCEEEEEEChhcccccC
Confidence 9999999999 8999999999974 3344 667899999876432 337999999999975443
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...+++ +.+.+.++ -++|++|++++.|++++++.|..
T Consensus 124 v~~~~~----~~~~~~~~------~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 124 ITNEEA----EALAKRLQ------LPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred CCHHHH----HHHHHHcC------CeEEEEECCCCCCHHHHHHHHHH
Confidence 332222 22333322 15789999999999999988864
No 51
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=8.3e-19 Score=203.07 Aligned_cols=329 Identities=16% Similarity=0.154 Sum_probs=196.9
Q ss_pred cEEEEecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHhcc
Q 000665 77 KHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKV 156 (1363)
Q Consensus 77 ~~L~Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~ 156 (1363)
..|+.+++++.....+.+.-.+ .+.-+.|+||+|++++.+...+ ...++|+++++..|.++ .++.....
T Consensus 55 ~lldcs~~~lea~~~~~l~g~l--p~~t~~LdlsnNkl~~id~~~f----~nl~nLq~v~l~~N~Lt-----~IP~f~~~ 123 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFL--PSQTQTLDLSNNKLSHIDFEFF----YNLPNLQEVNLNKNELT-----RIPRFGHE 123 (873)
T ss_pred eeeecCccccccccccccCCcC--ccceeeeeccccccccCcHHHH----hcCCcceeeeeccchhh-----hccccccc
Confidence 4566777766543332221111 1334679999999998877544 34689999999999987 35555555
Q ss_pred CCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHH-Hhhc
Q 000665 157 NDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKV-VEFL 235 (1363)
Q Consensus 157 ~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l-~~~L 235 (1363)
..+|+.|+|.+|.|+....+.+. ..+.|++||||.|.+..-. ...+-...++++|+|++|... .+ ...+
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~----~l~alrslDLSrN~is~i~---~~sfp~~~ni~~L~La~N~It---~l~~~~F 193 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELS----ALPALRSLDLSRNLISEIP---KPSFPAKVNIKKLNLASNRIT---TLETGHF 193 (873)
T ss_pred ccceeEEeeeccccccccHHHHH----hHhhhhhhhhhhchhhccc---CCCCCCCCCceEEeecccccc---ccccccc
Confidence 66799999999999887666554 3466899999998642210 011223357999999998311 11 2234
Q ss_pred CCCCcceeeccCchhHHHHHH-HhcCCCcccEEEccCCCCChHHHHHH------HH--------------HHhhCCCccE
Q 000665 236 PENGTLRIYRLDVSGSCRVAC-SLGCNTTVKSLDMTGVRLKSRWAKEF------RW--------------VLQQNQSLKE 294 (1363)
Q Consensus 236 ~~~~~L~~L~Ls~~g~~~L~~-~L~~~~~L~~LdLs~N~L~~~~~~~L------~~--------------~L~~n~~L~~ 294 (1363)
....+|-.++++.+.+..++. .++.++.|+.|+|..|.|...-...| -. ++-.+.++++
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 455577777777777777664 45567888888888887744211111 00 0011234666
Q ss_pred EEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHH
Q 000665 295 VILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIA 374 (1363)
Q Consensus 295 LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~ 374 (1363)
|+|+.|+++...- .++..++.|+.|+||+|.|....+..- .-+.+|+.|+|+ +|+|+...-.
T Consensus 274 l~L~~N~l~~vn~----g~lfgLt~L~~L~lS~NaI~rih~d~W------------sftqkL~~LdLs--~N~i~~l~~~ 335 (873)
T KOG4194|consen 274 LNLETNRLQAVNE----GWLFGLTSLEQLDLSYNAIQRIHIDSW------------SFTQKLKELDLS--SNRITRLDEG 335 (873)
T ss_pred eecccchhhhhhc----ccccccchhhhhccchhhhheeecchh------------hhcccceeEecc--ccccccCChh
Confidence 6666666553211 134556667777777776665443332 234567777776 5666654433
Q ss_pred HHHHccccCcceEEEEecCCCCCCHHHHHHHHHH-HhhCCCccEEEeecCCC--CCChhHHHHHHHHHhcCCCccEEecc
Q 000665 375 AILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKS-LQKNASLRQLSLQGCKG--VRGELVQQAIMETLQVNPWIEDIDLE 451 (1363)
Q Consensus 375 ~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~-L~~~~~L~~L~Ls~N~~--~i~~~~~~~L~~~L~~n~~L~~LdL~ 451 (1363)
++. ....|+.|+|++| . +..+++. +....+|+.|||++|.. .+.| -+..+..+++|+.|+|.
T Consensus 336 sf~----~L~~Le~LnLs~N-s-----i~~l~e~af~~lssL~~LdLr~N~ls~~IED-----aa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 336 SFR----VLSQLEELNLSHN-S-----IDHLAEGAFVGLSSLHKLDLRSNELSWCIED-----AAVAFNGLPSLRKLRLT 400 (873)
T ss_pred HHH----HHHHhhhhccccc-c-----hHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-----chhhhccchhhhheeec
Confidence 332 2345677777777 3 3344443 33466777777777762 1222 24445556777777777
Q ss_pred CCCCCCCC
Q 000665 452 RTPLKNSG 459 (1363)
Q Consensus 452 ~N~l~~~g 459 (1363)
||+|....
T Consensus 401 gNqlk~I~ 408 (873)
T KOG4194|consen 401 GNQLKSIP 408 (873)
T ss_pred Cceeeecc
Confidence 77776654
No 52
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.70 E-value=2.1e-16 Score=172.75 Aligned_cols=154 Identities=18% Similarity=0.364 Sum_probs=113.4
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~y 565 (1363)
.+|++++|++|||||||++++.+. +...+.| |.|+++.. +.+..+++.+||++||+.|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 68 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYIT-----------------TIGVDFKIRTVEINGERVKLQIWDTAGQERF 68 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCc-----------------cccceeEEEEEEECCEEEEEEEEeCCCchhH
Confidence 579999999999999999999876 4333322 44544332 2345678999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..++..++. ...++++|||+++ .+++ +.+..|+..+....+ ..|++|||||.|+......
T Consensus 69 ~~~~~~~~~---~a~~iilv~D~~~---------~~s~-~~~~~~~~~i~~~~~-------~~piivVgNK~Dl~~~~~~ 128 (199)
T cd04110 69 RTITSTYYR---GTHGVIVVYDVTN---------GESF-VNVKRWLQEIEQNCD-------DVCKVLVGNKNDDPERKVV 128 (199)
T ss_pred HHHHHHHhC---CCcEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCC-------CCCEEEEEECccccccccc
Confidence 999999999 7889999999984 3444 567899999877433 3479999999999653322
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..++. ..+...+. ..+|.+|++++.|++++++.|.+
T Consensus 129 ~~~~~----~~~~~~~~------~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 129 ETEDA----YKFAGQMG------ISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred CHHHH----HHHHHHcC------CEEEEEECCCCcCHHHHHHHHHH
Confidence 22211 22222221 25799999999999999998876
No 53
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.70 E-value=1.3e-17 Score=202.25 Aligned_cols=369 Identities=22% Similarity=0.276 Sum_probs=286.5
Q ss_pred hhhCCCccEEEEecCCCCHHH---HHHHHHHhhcCCC----ccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCC
Q 000665 70 EKAHTSLKHLEFHSVEWEIEQ---MRILGLLLDCSSN----VKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGI 142 (1363)
Q Consensus 70 l~~~~~L~~L~Ls~~~i~~~~---~~~L~~~L~~~~~----L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I 142 (1363)
+..++.+..+.+..+...+.+ .-.....+....+ +..|.|.+|.+.+.++..++.++..+.+|..|+++.|.+
T Consensus 48 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l 127 (478)
T KOG4308|consen 48 LRRNTTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNL 127 (478)
T ss_pred hhhccchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCC
Confidence 344455566666666555544 2112222222222 778888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHhccC-CCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCC-ChHHHHHHHHHh----CCCce
Q 000665 143 KNAGASLLASALKVN-DTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSL-TATPLISAVLAR----NRAME 216 (1363)
Q Consensus 143 ~~~g~~~L~~~L~~~-~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~-~~~~~l~~~l~~----~~~L~ 216 (1363)
++.|+..+...+..+ ..|+.|++..|.+++.|...++..+..+..++.++++.|.+. .+...+...+.. ..+++
T Consensus 128 ~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le 207 (478)
T KOG4308|consen 128 GDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLE 207 (478)
T ss_pred ccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHH
Confidence 888888888888887 678888888888888888888888888888888888888753 345555555554 45677
Q ss_pred EEEccCCCCcchhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCCc-ccEEEccCCCCChHHHHHHHHHHhhC-CCccE
Q 000665 217 VHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTT-VKSLDMTGVRLKSRWAKEFRWVLQQN-QSLKE 294 (1363)
Q Consensus 217 ~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~-L~~LdLs~N~L~~~~~~~L~~~L~~n-~~L~~ 294 (1363)
+|.+++| .++..++..+...+...++ +..|+++.|++.+.|+..+...+... ..+++
T Consensus 208 ~L~L~~~---------------------~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~ 266 (478)
T KOG4308|consen 208 TLKLSRC---------------------GVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRV 266 (478)
T ss_pred HHhhhhc---------------------CcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhh
Confidence 7777666 4677888888888988877 88899999999999999999999887 78999
Q ss_pred EEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHH
Q 000665 295 VILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIA 374 (1363)
Q Consensus 295 LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~ 374 (1363)
++++.|.|++.|+..+++.+..++.++.|.+++|.+++.++..+...+ .....+..+.+.+ .+..+..+..
T Consensus 267 l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l--------~~~~~~~~~~l~~-~~~~~~~~~~ 337 (478)
T KOG4308|consen 267 LDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEAL--------ERKTPLLHLVLGG-TGKGTRGGTS 337 (478)
T ss_pred hhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHh--------hhcccchhhhccc-cCccchhHHH
Confidence 999999999999999999999999999999999999999999999887 3556666777764 4566665666
Q ss_pred HHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCC-ccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCC
Q 000665 375 AILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNAS-LRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERT 453 (1363)
Q Consensus 375 ~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~-L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N 453 (1363)
.++.+......+....+++| ...+++...+......-.. +..+++..|. +...+...++-.+..++.+..++++.|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~~~~~~~~~l~~~~l~~n 414 (478)
T KOG4308|consen 338 VLAEADAQRQLLSELGISGN-RVGEEGLALLVLAKSNPKSELLRLSLNSQV--IEGRGALRLAAQLASNEKLEILDLSLN 414 (478)
T ss_pred HHHHHHHHhhhhHHHHhhhc-cchHHHHHHHhhhhcccCcccchhhhhccc--cccHHHHHhhhhhhhcchhhhhhhhcC
Confidence 66666555555566667777 6888887777777655333 6677776554 666788899999999999999999999
Q ss_pred CCCCCCchHHHHHHHhccC
Q 000665 454 PLKNSGKADGIYQRLGQKG 472 (1363)
Q Consensus 454 ~l~~~g~~~~i~~~l~~~~ 472 (1363)
...+.+ ...+.+...++.
T Consensus 415 ~~~~~~-~~~l~~~~~~~~ 432 (478)
T KOG4308|consen 415 SLHDEG-AEVLTEQLSRNG 432 (478)
T ss_pred ccchhh-HHHHHHhhhhcc
Confidence 999988 677777777766
No 54
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.69 E-value=3.1e-16 Score=173.92 Aligned_cols=155 Identities=18% Similarity=0.268 Sum_probs=114.0
Q ss_pred CCceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEE----ecCceEEEEEecCCch
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL----KDEDTRISIWNLAGQH 563 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~----~~~~~~l~iWDfaGQe 563 (1363)
...+|++++|++|||||||++++..+ +...+. .|.|+++..+ .++.+++.+||++||+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~-----------------~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~ 73 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-----------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccC-----------------CccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 45689999999999999999998765 433332 3556554433 2456899999999999
Q ss_pred hhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 564 EFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 564 ~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
.|..+++.|+. ...++|+|||+++ .+.+ ..+..|+..|....+ ..||+|||||.|+....
T Consensus 74 ~~~~~~~~~~~---~~~~~ilvfD~~~---------~~s~-~~i~~w~~~i~~~~~-------~~piilvgNK~Dl~~~~ 133 (219)
T PLN03071 74 KFGGLRDGYYI---HGQCAIIMFDVTA---------RLTY-KNVPTWHRDLCRVCE-------NIPIVLCGNKVDVKNRQ 133 (219)
T ss_pred hhhhhhHHHcc---cccEEEEEEeCCC---------HHHH-HHHHHHHHHHHHhCC-------CCcEEEEEEchhhhhcc
Confidence 99999999999 8899999999985 2344 566889999986432 34799999999985321
Q ss_pred chhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 644 SQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 644 ~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
...+. + .+.... + -.+|.+||+++.|++++|..|.+.
T Consensus 134 -v~~~~----~-~~~~~~-~-----~~~~e~SAk~~~~i~~~f~~l~~~ 170 (219)
T PLN03071 134 -VKAKQ----V-TFHRKK-N-----LQYYEISAKSNYNFEKPFLYLARK 170 (219)
T ss_pred -CCHHH----H-HHHHhc-C-----CEEEEcCCCCCCCHHHHHHHHHHH
Confidence 11111 1 122221 1 246899999999999999988763
No 55
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.69 E-value=3.3e-16 Score=172.82 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=110.2
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|.++||||||++++..+ |.. +. .|.|.++.....+.+.+.|||++||+.|+.++.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~-----------------~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TV-----------------STVGGAFYLKQWGPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CC-----------------CccceEEEEEEeeEEEEEEEeCCCcccchhhHH
Confidence 48999999999999999999976 321 22 244544433333567899999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC--------
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ-------- 642 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~-------- 642 (1363)
.|++ ...++|+|||+++ .+.+ +.+..|+..+.... ...+|+||||||.|+...
T Consensus 63 ~~~~---~ad~~IlV~Dvt~---------~~Sf-~~l~~~~~~l~~~~------~~~~piIlVgNK~DL~~~~~~~~~~~ 123 (220)
T cd04126 63 MYCR---GAAAVILTYDVSN---------VQSL-EELEDRFLGLTDTA------NEDCLFAVVGNKLDLTEEGALAGQEK 123 (220)
T ss_pred HHhc---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhc------CCCCcEEEEEECcccccccccccccc
Confidence 9999 8999999999985 3344 33455555554321 123579999999999751
Q ss_pred -----------CchhhHHHHHHHHHHHHHhccc-------cCC-CCcEEEEcCCCCCChhHHHHHHHHHHH
Q 000665 643 -----------PSQDMQLTVSSIQRLKDKFQGF-------VDF-YPTVFTIDARSSASVTKLTHHIRKTSR 694 (1363)
Q Consensus 643 -----------~~~~~~~~~~~~~~lr~~f~~~-------~~i-~~~v~~vs~~~~~~i~~L~~~L~~~~~ 694 (1363)
+....+++.. +.+++... ..+ .-.+|++||++|.||++++..+.+.+.
T Consensus 124 ~~~~~~~~~~~r~v~~~e~~~----~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 124 DAGDRVSPEDQRQVTLEDAKA----FYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccccccccccCCHHHHHH----HHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1222222222 22222211 000 024689999999999999998876443
No 56
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.69 E-value=2.3e-16 Score=166.03 Aligned_cols=158 Identities=18% Similarity=0.227 Sum_probs=111.9
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|++|||||||++++..+ +...+.||++. .-.......+..+.+.+||++||+.|..+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~--------------~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED--------------SYRKQIEVDGQQCMLEILDTAGTEQFTAMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh--------------hEEEEEEECCEEEEEEEEECCCccccchHHH
Confidence 59999999999999999999976 44333333211 0011122335568899999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.|+. ...++++|||+++ .+++ +.+..|+..+..... ....|+++||||+|+........++
T Consensus 68 ~~~~---~~~~~ilv~d~~~---------~~s~-~~~~~~~~~i~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~- 128 (163)
T cd04136 68 LYIK---NGQGFVLVYSITS---------QSSF-NDLQDLREQILRVKD-----TENVPMVLVGNKCDLEDERVVSREE- 128 (163)
T ss_pred HHhh---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcC-----CCCCCEEEEEECccccccceecHHH-
Confidence 9999 8999999999974 3344 566788888876321 1234799999999986433222221
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...+.+.+. .+++.+||+++.|++++++.|.+
T Consensus 129 ---~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 129 ---GQALARQWG------CPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ---HHHHHHHcC------CeEEEecCCCCCCHHHHHHHHHH
Confidence 223333332 25789999999999999988764
No 57
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.69 E-value=2.3e-16 Score=168.27 Aligned_cols=159 Identities=19% Similarity=0.282 Sum_probs=111.2
Q ss_pred EEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccccc
Q 000665 494 VFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLM 572 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~F 572 (1363)
++++|++|+|||||++++.++ +...+.|++.. +. .......+..+.+.+||++||+.|..+++.+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFE-------------NY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEe-------------ee-eEEEEECCEEEEEEEEECCCCcccchhchhh
Confidence 479999999999999999987 54444443321 11 1111234567889999999999999999999
Q ss_pred cccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH--
Q 000665 573 FPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT-- 650 (1363)
Q Consensus 573 lt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~-- 650 (1363)
+. ...++++|||+++ .++++.....|+..+..+.++ .||++||||.|+...... .+..
T Consensus 67 ~~---~~d~~ilv~d~~~---------~~s~~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~-~~~~~~ 126 (174)
T smart00174 67 YP---DTDVFLICFSVDS---------PASFENVKEKWYPEVKHFCPN-------TPIILVGTKLDLREDKST-LRELSK 126 (174)
T ss_pred cC---CCCEEEEEEECCC---------HHHHHHHHHHHHHHHHhhCCC-------CCEEEEecChhhhhChhh-hhhhhc
Confidence 99 8999999999974 455644456899999875433 379999999999643210 0000
Q ss_pred -------HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 -------VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 -------~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+..+.+.+.++. ..++.+||+++.|++++++.+.+
T Consensus 127 ~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 127 QKQEPVTYEQGEALAKRIGA-----VKYLECSALTQEGVREVFEEAIR 169 (174)
T ss_pred ccCCCccHHHHHHHHHHcCC-----cEEEEecCCCCCCHHHHHHHHHH
Confidence 0112233333321 24689999999999999988865
No 58
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.69 E-value=3.5e-16 Score=165.58 Aligned_cols=156 Identities=18% Similarity=0.351 Sum_probs=113.0
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~y 565 (1363)
.+|++++|.+|+|||||++++..+ +...+.| |.|++... +.+..+.+.+||++||+.|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 64 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYIS-----------------TIGVDFKIRTIELDGKTIKLQIWDTAGQERF 64 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-----------------ccceeEEEEEEEECCEEEEEEEEECCCcHhH
Confidence 369999999999999999999976 4332222 44443322 2345688999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
...++.++. ...++++|||+++ .+.+ ..+..|+..+..... ...|+++||||.|+......
T Consensus 65 ~~~~~~~~~---~~~~ii~v~d~~~---------~~s~-~~l~~~~~~~~~~~~------~~~~~iiv~nK~Dl~~~~~~ 125 (166)
T cd01869 65 RTITSSYYR---GAHGIIIVYDVTD---------QESF-NNVKQWLQEIDRYAS------ENVNKLLVGNKCDLTDKRVV 125 (166)
T ss_pred HHHHHHHhC---cCCEEEEEEECcC---------HHHH-HhHHHHHHHHHHhCC------CCCcEEEEEEChhcccccCC
Confidence 999999999 8999999999974 3333 666789999876431 13479999999998654333
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
..+++ +.+.+.+. -+++++||+++.|+++++..|.+.
T Consensus 126 ~~~~~----~~~~~~~~------~~~~~~Sa~~~~~v~~~~~~i~~~ 162 (166)
T cd01869 126 DYSEA----QEFADELG------IPFLETSAKNATNVEQAFMTMARE 162 (166)
T ss_pred CHHHH----HHHHHHcC------CeEEEEECCCCcCHHHHHHHHHHH
Confidence 32222 22222221 257899999999999999888653
No 59
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.68 E-value=4.4e-16 Score=165.39 Aligned_cols=155 Identities=17% Similarity=0.288 Sum_probs=112.3
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y 565 (1363)
.+|++++|.++||||||++++... +...+ ..|.|.+.. .+.+..+.+.+||++|++.|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 66 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------DLTIGVEFGARMITIDGKQIKLQIWDTAGQESF 66 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------------CCccceeEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 479999999999999999999976 32211 124454433 23355689999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..+.+.++. ...++++|||+++ ++.+ ..+..|+..++.... ...||++||||.|+......
T Consensus 67 ~~~~~~~~~---~~d~il~v~d~~~---------~~s~-~~~~~~~~~~~~~~~------~~~pvivv~nK~Dl~~~~~~ 127 (168)
T cd01866 67 RSITRSYYR---GAAGALLVYDITR---------RETF-NHLTSWLEDARQHSN------SNMTIMLIGNKCDLESRREV 127 (168)
T ss_pred HHHHHHHhc---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCC------CCCcEEEEEECcccccccCC
Confidence 999998898 8899999999974 3344 567899999977421 23489999999999743333
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..++. +.+....+ ..++++|++++.|+++++..+.+
T Consensus 128 ~~~~~----~~~~~~~~------~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 128 SYEEG----EAFAKEHG------LIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred CHHHH----HHHHHHcC------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 32222 22222221 24689999999999999987765
No 60
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.68 E-value=4.6e-16 Score=166.02 Aligned_cols=158 Identities=17% Similarity=0.219 Sum_probs=110.3
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|++|||||||++++..+ |...+.||++. .......+.+..+.+.+||++||+.|..+++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~--------------~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~ 68 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIED--------------AYKQQARIDNEPALLDILDTAGQAEFTAMRD 68 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccc--------------eEEEEEEECCEEEEEEEEeCCCchhhHHHhH
Confidence 69999999999999999999876 54433343321 0011123345678999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. ...++++|||+++ ..++ +.+..|...+..... ....|+++||||.|+........++.
T Consensus 69 ~~~~---~~d~~ilv~d~~~---------~~Sf-~~~~~~~~~i~~~~~-----~~~~piilvgNK~Dl~~~~~v~~~~~ 130 (172)
T cd04141 69 QYMR---CGEGFIICYSVTD---------RHSF-QEASEFKKLITRVRL-----TEDIPLVLVGNKVDLESQRQVTTEEG 130 (172)
T ss_pred HHhh---cCCEEEEEEECCc---------hhHH-HHHHHHHHHHHHhcC-----CCCCCEEEEEEChhhhhcCccCHHHH
Confidence 9999 8899999999985 2333 444668777754211 11347999999999865433332222
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+.+.+.+. -+++++||+++.||+++++.|..
T Consensus 131 ----~~~a~~~~------~~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 131 ----RNLAREFN------CPFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred ----HHHHHHhC------CEEEEEecCCCCCHHHHHHHHHH
Confidence 22222221 25689999999999999988865
No 61
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.68 E-value=3.2e-16 Score=170.09 Aligned_cols=160 Identities=17% Similarity=0.220 Sum_probs=111.8
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDL 571 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~ 571 (1363)
|++++|++|||||||++++..+ |...+.|+++. .-.......+..+.+.+||++|++.|...++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~--------------~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIED--------------SYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHh--------------hEEEEEEECCEEEEEEEEECCCchhhHHHHHH
Confidence 6899999999999999999876 54333333221 00111223355678999999999999999999
Q ss_pred ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHH
Q 000665 572 MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTV 651 (1363)
Q Consensus 572 Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~ 651 (1363)
|+. ...++++|||+++ .+++ +.+..|+..+...... .....|+++||||+|+........+.
T Consensus 67 ~~~---~ad~~ilv~d~~~---------~~s~-~~~~~~~~~i~~~~~~---~~~~~piilvgNK~Dl~~~~~v~~~~-- 128 (190)
T cd04144 67 WIR---EGEGFILVYSITS---------RSTF-ERVERFREQIQRVKDE---SAADVPIMIVGNKCDKVYEREVSTEE-- 128 (190)
T ss_pred HHH---hCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHHhcc---cCCCCCEEEEEEChhccccCccCHHH--
Confidence 999 8999999999974 2333 5678898888763221 11245799999999996533322221
Q ss_pred HHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 652 SSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 652 ~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
.+.+...+. ..++.+||+++.|++++++.|.+.
T Consensus 129 --~~~~~~~~~------~~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 129 --GAALARRLG------CEFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred --HHHHHHHhC------CEEEEecCCCCCCHHHHHHHHHHH
Confidence 122223332 146899999999999999988763
No 62
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.68 E-value=3.8e-16 Score=164.38 Aligned_cols=154 Identities=18% Similarity=0.268 Sum_probs=112.0
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|++++|||||+++|.++ +...+ ..|.|.+... ..+..+.+.+||++||+.|.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 63 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDS-----------------QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR 63 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------CCceeeeEEEEEEEECCEEEEEEEEECcchHHHH
Confidence 48999999999999999999876 32222 2244444332 22456889999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
.+++.|++ ...++++|||+++ .+++ ..+..|+..++..... ..|+++||||+|+...+...
T Consensus 64 ~~~~~~~~---~~~~~i~v~d~~~---------~~s~-~~~~~~~~~~~~~~~~------~~~iivv~nK~D~~~~~~~~ 124 (161)
T cd04113 64 SVTRSYYR---GAAGALLVYDITN---------RTSF-EALPTWLSDARALASP------NIVVILVGNKSDLADQREVT 124 (161)
T ss_pred HhHHHHhc---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCCC------CCeEEEEEEchhcchhccCC
Confidence 99999999 8899999999974 3344 5678999988753321 34799999999996533332
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+++ ..+...+. ..++.+||+++.|++++++.+.+
T Consensus 125 ~~~~----~~~~~~~~------~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 125 FLEA----SRFAQENG------LLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HHHH----HHHHHHcC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 2222 22222322 25799999999999999988765
No 63
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.68 E-value=6.6e-16 Score=162.84 Aligned_cols=150 Identities=16% Similarity=0.301 Sum_probs=108.5
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|.+|+|||||++++..+ +.... ..|.+..+.. ..+..+.+.+||++||+.|.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 63 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ-----------------LSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ 63 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc-----------------CCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh
Confidence 48999999999999999999876 33221 1233433322 23567899999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
.+++.|+. ...++++|||+++ ...+ ..+..|+..++...+ ..|+++||||+|+... .
T Consensus 64 ~~~~~~~~---~~d~~i~v~d~~~---------~~s~-~~~~~~~~~i~~~~~-------~~p~ivv~nK~Dl~~~--~- 120 (161)
T cd04124 64 TMHASYYH---KAHACILVFDVTR---------KITY-KNLSKWYEELREYRP-------EIPCIVVANKIDLDPS--V- 120 (161)
T ss_pred hhhHHHhC---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCC-------CCcEEEEEECccCchh--H-
Confidence 99999999 8999999999874 2333 556899999976432 2379999999998421 1
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.++ ...+.+.+ + -+++.+|++++.|++++++.+.+
T Consensus 121 ~~~----~~~~~~~~-~-----~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 121 TQK----KFNFAEKH-N-----LPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred HHH----HHHHHHHc-C-----CeEEEEeCCCCCCHHHHHHHHHH
Confidence 111 11222222 1 25688999999999999988865
No 64
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=6e-16 Score=167.56 Aligned_cols=156 Identities=22% Similarity=0.408 Sum_probs=113.0
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEE----EEEecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKI----KTLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i----~~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|++|||||||++++.++ +...+.| |.|.+. ....++.+.+.+||++|++.|.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~ 63 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKS-----------------TIGVDFKIKTVYIENKIIKLQIWDTNGQERFR 63 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-----------------ceeeEEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 48999999999999999999976 4332333 334322 2233557889999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
.+++.++. ...++++|||+++ .+++ ..+..|+..+....+. .+|+++||||.|+.+.....
T Consensus 64 ~~~~~~~~---~~d~iilv~d~~~---------~~s~-~~i~~~~~~i~~~~~~------~~~~ivv~nK~Dl~~~~~v~ 124 (188)
T cd04125 64 SLNNSYYR---GAHGYLLVYDVTD---------QESF-ENLKFWINEINRYARE------NVIKVIVANKSDLVNNKVVD 124 (188)
T ss_pred hhHHHHcc---CCCEEEEEEECcC---------HHHH-HHHHHHHHHHHHhCCC------CCeEEEEEECCCCcccccCC
Confidence 99999999 8999999999974 3444 5567799998764322 35799999999987543322
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
.+.. +.+...+ .+ .++.+||+++.|++++++.|.+.+
T Consensus 125 ~~~~----~~~~~~~----~~--~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 125 SNIA----KSFCDSL----NI--PFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred HHHH----HHHHHHc----CC--eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2211 2222222 11 478999999999999999887643
No 65
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.68 E-value=6.9e-16 Score=163.64 Aligned_cols=152 Identities=18% Similarity=0.300 Sum_probs=112.4
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe----cCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK----DEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~----~~~~~l~iWDfaGQe~y~ 566 (1363)
.|++++|++|||||||++++..+ +...+ ..|.|+++..+. ++.+.+.+||++||+.|.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 63 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKY-----------------VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG 63 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------CCceeeEEEEEEEEECCEEEEEEEEECCCChhhc
Confidence 38999999999999999999865 33222 236666655442 457899999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
..+..|+. ...++|+|||+++ .+++ ..+..|+..+....+ ..|+++||||+|+.... ..
T Consensus 64 ~~~~~~~~---~~d~~i~v~d~~~---------~~s~-~~~~~~~~~i~~~~~-------~~piiiv~nK~Dl~~~~-~~ 122 (166)
T cd00877 64 GLRDGYYI---GGQCAIIMFDVTS---------RVTY-KNVPNWHRDLVRVCG-------NIPIVLCGNKVDIKDRK-VK 122 (166)
T ss_pred cccHHHhc---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCC-------CCcEEEEEEchhccccc-CC
Confidence 99999999 8999999999974 3344 567899999987432 34799999999996321 11
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
++. .++.... ...+|++||+++.|++++++.|.+.
T Consensus 123 -~~~----~~~~~~~------~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 123 -AKQ----ITFHRKK------NLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred -HHH----HHHHHHc------CCEEEEEeCCCCCChHHHHHHHHHH
Confidence 111 1121111 1357999999999999999998753
No 66
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.68 E-value=5.8e-16 Score=163.63 Aligned_cols=155 Identities=15% Similarity=0.315 Sum_probs=112.3
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~y 565 (1363)
.+|++++|.++||||||++++.+. +...+.| |.|.+... ..+..+.+.+||++||+.|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 65 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKS-----------------TIGVEFATRSIQIDGKTIKAQIWDTAGQERY 65 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-----------------ccceEEEEEEEEECCEEEEEEEEeCCChHHH
Confidence 369999999999999999999876 3332222 44433322 2245678999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..+.+.++. ...++++|||+++ ...+ ..+..|+..+....+. .+|+++||||.|+...+..
T Consensus 66 ~~~~~~~~~---~~~~~i~v~d~~~---------~~s~-~~~~~~~~~~~~~~~~------~~pi~vv~nK~Dl~~~~~~ 126 (165)
T cd01868 66 RAITSAYYR---GAVGALLVYDITK---------KQTF-ENVERWLKELRDHADS------NIVIMLVGNKSDLRHLRAV 126 (165)
T ss_pred HHHHHHHHC---CCCEEEEEEECcC---------HHHH-HHHHHHHHHHHHhCCC------CCeEEEEEECccccccccC
Confidence 999999998 7888999999974 3343 6678999999875432 3589999999998654332
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..++. +.+.... + -.++++||+++.|++++++.|.+
T Consensus 127 ~~~~~----~~~~~~~-~-----~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 127 PTEEA----KAFAEKN-G-----LSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred CHHHH----HHHHHHc-C-----CEEEEEECCCCCCHHHHHHHHHH
Confidence 22221 2222221 1 24689999999999999988764
No 67
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.67 E-value=5.1e-16 Score=163.98 Aligned_cols=158 Identities=17% Similarity=0.226 Sum_probs=110.6
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
.|++++|.+|||||||++++..+ +...+.||++. +. .......+..+.+.+||++||+.|..+++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-------------~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-------------SY-RKQVEVDGQQCMLEILDTAGTEQFTAMRD 67 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-------------eE-EEEEEECCEEEEEEEEECCCcccchhHHH
Confidence 59999999999999999999866 43333333221 11 11122335578899999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. ...++++|||+++ ..++ +.+..|+..+..... ....|+++||||+|+........+.
T Consensus 68 ~~~~---~~d~~ilv~d~~~---------~~s~-~~~~~~~~~i~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~- 128 (164)
T cd04175 68 LYMK---NGQGFVLVYSITA---------QSTF-NDLQDLREQILRVKD-----TEDVPMILVGNKCDLEDERVVGKEQ- 128 (164)
T ss_pred HHHh---hCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcC-----CCCCCEEEEEECCcchhccEEcHHH-
Confidence 9999 8889999999874 3334 455678887765321 1234799999999997543322221
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+.+.+++. -+++++||+++.|+++++..|.+
T Consensus 129 ---~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 129 ---GQNLARQWG------CAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ---HHHHHHHhC------CEEEEeeCCCCCCHHHHHHHHHH
Confidence 233333332 24689999999999999988865
No 68
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=8.6e-16 Score=169.38 Aligned_cols=158 Identities=18% Similarity=0.288 Sum_probs=115.2
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEE-----ecCceEEEEEecCCchh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL-----KDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~-----~~~~~~l~iWDfaGQe~ 564 (1363)
.+|++++|++|||||||++++.++ +...+. +|.|++.... .+..+.+.+||++||+.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-----------------~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~ 64 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-----------------PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER 64 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-----------------ceeceEEEEEEEEECCCCEEEEEEEeCCcchh
Confidence 369999999999999999999976 332222 3555443322 23468999999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|..+++.|+. ...++++|||+++ .+++ +.+..|+..|...... ..+|++|||||.|+.....
T Consensus 65 ~~~~~~~~~~---~~d~iilv~D~~~---------~~Sf-~~l~~~~~~i~~~~~~-----~~~~iilvgNK~Dl~~~~~ 126 (211)
T cd04111 65 FRSITRSYYR---NSVGVLLVFDITN---------RESF-EHVHDWLEEARSHIQP-----HRPVFILVGHKCDLESQRQ 126 (211)
T ss_pred HHHHHHHHhc---CCcEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcCC-----CCCeEEEEEEccccccccc
Confidence 9999999999 8899999999974 3444 5668899988764321 2467999999999965433
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
...++ .+.+.+.++ -.++.+||+++.|++++++.|.+.+
T Consensus 127 v~~~~----~~~~~~~~~------~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 127 VTREE----AEKLAKDLG------MKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred cCHHH----HHHHHHHhC------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33222 233333332 2468999999999999999987643
No 69
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.67 E-value=2.6e-16 Score=167.21 Aligned_cols=157 Identities=17% Similarity=0.256 Sum_probs=108.0
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
+.+|++++|.++||||||++++..+....+ ..|.|+++..+..+.++|.+||++||+.|..++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~-----------------~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 70 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-----------------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 70 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccc-----------------cCCcccceEEEEECCEEEEEEECCCCHHHHHHH
Confidence 347999999999999999999986511111 225666666666678999999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
+.|++ ...++++|||+++ ...+. .+..|+..+..... ...+|++|||||+|+.... ..+
T Consensus 71 ~~~~~---~a~~ii~v~D~t~---------~~s~~-~~~~~~~~~~~~~~-----~~~~piilv~NK~Dl~~~~--~~~- 129 (168)
T cd04149 71 RHYYT---GTQGLIFVVDSAD---------RDRID-EARQELHRIINDRE-----MRDALLLVFANKQDLPDAM--KPH- 129 (168)
T ss_pred HHHhc---cCCEEEEEEeCCc---------hhhHH-HHHHHHHHHhcCHh-----hcCCcEEEEEECcCCccCC--CHH-
Confidence 99999 8999999999984 23343 33445544433110 1134799999999986421 212
Q ss_pred HHHHHHHHHHHhc--cccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 650 TVSSIQRLKDKFQ--GFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 650 ~~~~~~~lr~~f~--~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
+++.... ......-.++++||++|.|+++++++|.
T Consensus 130 ------~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 130 ------EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred ------HHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 1222111 1111111468899999999999998875
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.67 E-value=7.5e-16 Score=161.67 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=109.3
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|++|+|||||++++.++ +...+.|+++. +. .....+.+..+.+.+||++||+.|+.+++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-------------~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~ 67 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-------------SY-RKQVVIDGETCLLDILDTAGQEEYSAMRD 67 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh-------------eE-EEEEEECCEEEEEEEEECCCCcchHHHHH
Confidence 59999999999999999999976 44333333221 11 11122334567899999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.|+. .+..+++|||+++ ..++ +.+..|+..+..... ....|+++||||+|+... .....+
T Consensus 68 ~~~~---~~~~~i~v~~~~~---------~~s~-~~~~~~~~~i~~~~~-----~~~~piivv~nK~Dl~~~-~~~~~~- 127 (162)
T cd04138 68 QYMR---TGEGFLCVFAINS---------RKSF-EDIHTYREQIKRVKD-----SDDVPMVLVGNKCDLAAR-TVSSRQ- 127 (162)
T ss_pred HHHh---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcC-----CCCCCEEEEEECcccccc-eecHHH-
Confidence 9999 8899999999974 2333 456778877765321 113479999999999642 222121
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...+...+. -+++++||+++.|++++++.|.+
T Consensus 128 ---~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 128 ---GQDLAKSYG------IPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ---HHHHHHHhC------CeEEEecCCCCCCHHHHHHHHHH
Confidence 222222221 24689999999999999988864
No 71
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=7.1e-16 Score=167.50 Aligned_cols=157 Identities=18% Similarity=0.321 Sum_probs=113.4
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCC-CCCcceeecccccccccCccCCcceEE----EEEecCceEEEEEecCCchhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSS-SKLPYIEQVRTLVNPVEQAVRPVGMKI----KTLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~-~~~~t~~~~~~~~~p~~~~~~T~Gi~i----~~~~~~~~~l~iWDfaGQe~y 565 (1363)
+|++++|++|+|||||++++..+ +.. .+.+ |.|++. ..+.+..+.+.|||++||+.|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 63 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIA-----------------TVGIDFRNKVVTVDGVKVKLQIWDTAGQERF 63 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCC-----------------cccceeEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 48999999999999999999876 321 2222 333332 233456789999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
......++. ...++++|||+++ .+++ +.+..|+..+....+. ..|+++||||.|+...+..
T Consensus 64 ~~~~~~~~~---~ad~~i~v~D~~~---------~~s~-~~~~~~~~~i~~~~~~------~~piiiv~NK~Dl~~~~~~ 124 (191)
T cd04112 64 RSVTHAYYR---DAHALLLLYDITN---------KASF-DNIRAWLTEIKEYAQE------DVVIMLLGNKADMSGERVV 124 (191)
T ss_pred HHhhHHHcc---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCCC------CCcEEEEEEcccchhcccc
Confidence 998888888 7899999999974 2333 5567899999875433 3479999999999643322
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSR 694 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~ 694 (1363)
..++ .+.+...+. .+++.+|++++.|+++++..|.+.+.
T Consensus 125 ~~~~----~~~l~~~~~------~~~~e~Sa~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 125 KRED----GERLAKEYG------VPFMETSAKTGLNVELAFTAVAKELK 163 (191)
T ss_pred CHHH----HHHHHHHcC------CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222 233333332 25789999999999999998876443
No 72
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.67 E-value=7.5e-16 Score=163.04 Aligned_cols=160 Identities=16% Similarity=0.258 Sum_probs=110.4
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|++|+|||||++++..+ |...+.|+++. +. ........+.+.+.+||++||+.|..+++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-------------~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-------------TY-RQVISCSKNICTLQITDTTGSHQFPAMQR 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchh-------------eE-EEEEEECCEEEEEEEEECCCCCcchHHHH
Confidence 58999999999999999999976 44434443221 11 12223345678999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. ...++++|||+++ .+++ +.+..|+..++...... ....|+++||||.|+........++.
T Consensus 68 ~~~~---~~~~~ilv~d~~~---------~~s~-~~~~~~~~~i~~~~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~ 131 (165)
T cd04140 68 LSIS---KGHAFILVYSVTS---------KQSL-EELKPIYELICEIKGNN---IEKIPIMLVGNKCDESHKREVSSNEG 131 (165)
T ss_pred HHhh---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHHhcCC---CCCCCEEEEEECccccccCeecHHHH
Confidence 9888 8899999999974 2333 55677877776532211 12347999999999965332222211
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..+...+. -.++++||+++.|++++++.|..
T Consensus 132 ----~~~~~~~~------~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 132 ----AACATEWN------CAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred ----HHHHHHhC------CcEEEeecCCCCCHHHHHHHHHh
Confidence 11222221 24689999999999999998864
No 73
>PLN03110 Rab GTPase; Provisional
Probab=99.67 E-value=8e-16 Score=170.34 Aligned_cols=159 Identities=16% Similarity=0.269 Sum_probs=116.7
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~y 565 (1363)
.+|++++|++|||||||+++|.++ +...+. .|.|++... +.+..+.+.+||++||+.|
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~-----------------~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~ 74 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESK-----------------STIGVEFATRTLQVEGKTVKAQIWDTAGQERY 74 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----------------CceeEEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 479999999999999999999876 332222 355555432 3356789999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..+.+.|+. ...++++|||+++ .+.+ +.+.+|+..+....+. ..||++||||+|+...+..
T Consensus 75 ~~~~~~~~~---~~~~~ilv~d~~~---------~~s~-~~~~~~~~~~~~~~~~------~~piiiv~nK~Dl~~~~~~ 135 (216)
T PLN03110 75 RAITSAYYR---GAVGALLVYDITK---------RQTF-DNVQRWLRELRDHADS------NIVIMMAGNKSDLNHLRSV 135 (216)
T ss_pred HHHHHHHhC---CCCEEEEEEECCC---------hHHH-HHHHHHHHHHHHhCCC------CCeEEEEEEChhcccccCC
Confidence 999999999 8899999999974 2333 5678999999875432 3489999999998644322
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRT 695 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~ 695 (1363)
..+. .+.+...+. -+++.+|++++.|++++++.|...+.+
T Consensus 136 ~~~~----~~~l~~~~~------~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 136 AEED----GQALAEKEG------LSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CHHH----HHHHHHHcC------CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2221 223333321 257899999999999999988764433
No 74
>PTZ00369 Ras-like protein; Provisional
Probab=99.67 E-value=8.6e-16 Score=166.54 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=112.1
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSL 568 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~t 568 (1363)
..+|++++|++|||||||++++..+ +...+.||++. +. .....++++.+.+.+||++||+.|..+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~-------------~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIED-------------SY-RKQCVIDEETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhh-------------EE-EEEEEECCEEEEEEEEeCCCCccchhh
Confidence 3479999999999999999999976 44333332211 00 111124456788999999999999999
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhH
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQ 648 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~ 648 (1363)
++.|+. ...++++|||+++ .+++ +.+..|+..+....+ ....|+++||||.|+.........
T Consensus 70 ~~~~~~---~~d~iilv~D~s~---------~~s~-~~~~~~~~~i~~~~~-----~~~~piiiv~nK~Dl~~~~~i~~~ 131 (189)
T PTZ00369 70 RDQYMR---TGQGFLCVYSITS---------RSSF-EEIASFREQILRVKD-----KDRVPMILVGNKCDLDSERQVSTG 131 (189)
T ss_pred HHHHhh---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcC-----CCCCCEEEEEECcccccccccCHH
Confidence 999999 8999999999984 3343 556788888765322 123479999999998643322222
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 649 LTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 649 ~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+. ..+...+. .+++.+||+++.|+++++..|.+
T Consensus 132 ~~----~~~~~~~~------~~~~e~Sak~~~gi~~~~~~l~~ 164 (189)
T PTZ00369 132 EG----QELAKSFG------IPFLETSAKQRVNVDEAFYELVR 164 (189)
T ss_pred HH----HHHHHHhC------CEEEEeeCCCCCCHHHHHHHHHH
Confidence 11 12222221 24689999999999999988865
No 75
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.66 E-value=9.1e-16 Score=161.63 Aligned_cols=155 Identities=21% Similarity=0.363 Sum_probs=112.8
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcce----EEEEEecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGM----KIKTLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi----~i~~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|++++|||||++++.+. +.....| |.|. ....+.+..+++.+||++||+.|.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~ 64 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQES-----------------TIGAAFLTQTVNLDDTTVKFEIWDTAGQERYR 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-----------------ccceeEEEEEEEECCEEEEEEEEeCCchHHHH
Confidence 69999999999999999999977 3222222 3332 222344567899999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
..++.+++ ...++++|||+++ .+++ .....|+..+..+... ..|+++|+||.|+.......
T Consensus 65 ~~~~~~~~---~~~~~i~v~d~~~---------~~s~-~~~~~~~~~~~~~~~~------~~~iivv~nK~D~~~~~~~~ 125 (163)
T cd01860 65 SLAPMYYR---GAAAAIVVYDITS---------EESF-EKAKSWVKELQRNASP------NIIIALVGNKADLESKRQVS 125 (163)
T ss_pred HHHHHHhc---cCCEEEEEEECcC---------HHHH-HHHHHHHHHHHHhCCC------CCeEEEEEECccccccCcCC
Confidence 99999999 8899999999974 3333 5668999998874322 34799999999986433323
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
.+.. ..+...+. ..++++||+++.|++++++.|.+.
T Consensus 126 ~~~~----~~~~~~~~------~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 126 TEEA----QEYADENG------LLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred HHHH----HHHHHHcC------CEEEEEECCCCCCHHHHHHHHHHH
Confidence 2222 22222221 247999999999999999988653
No 76
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.66 E-value=8e-16 Score=162.35 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=110.2
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
.|++++|++|||||||++++.++ +...+.|+++ +.......+.+..+.+.+||++||+.|..+++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~--------------~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE--------------DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh--------------hhEEEEEEECCEEEEEEEEECCCcccchHHHH
Confidence 38999999999999999999976 4333323221 11112222335578999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. ....+++|||+++ .+++ +.+..|...+..... ....|+++||||+|+........+.
T Consensus 67 ~~~~---~~~~~i~v~d~~~---------~~s~-~~~~~~~~~i~~~~~-----~~~~pii~v~nK~Dl~~~~~~~~~~- 127 (164)
T smart00173 67 QYMR---TGEGFLLVYSITD---------RQSF-EEIKKFREQILRVKD-----RDDVPIVLVGNKCDLESERVVSTEE- 127 (164)
T ss_pred HHHh---hCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcC-----CCCCCEEEEEECccccccceEcHHH-
Confidence 9999 8899999999974 3333 556777777654221 1234799999999996533222221
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+.+.+.+. .+++++||+++.|++++++.|.+
T Consensus 128 ---~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 128 ---GKELARQWG------CPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ---HHHHHHHcC------CEEEEeecCCCCCHHHHHHHHHH
Confidence 222233332 25799999999999999988865
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.66 E-value=9.5e-16 Score=161.76 Aligned_cols=154 Identities=17% Similarity=0.245 Sum_probs=112.1
Q ss_pred eeEEecCccccchHHHHHHHhhc---CCCCCCcceeecccccccccCccCCcceEEE--EE---ecCceEEEEEecCCch
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN---FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK--TL---KDEDTRISIWNLAGQH 563 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~---~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~--~~---~~~~~~l~iWDfaGQe 563 (1363)
+|++++|++|+|||||++++..+ +...+.| |.|.++. .+ .+..+++.+||++||+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLM-----------------TTGCDFVVKEVPVDTDNTVELFIFDSAGQE 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCC-----------------ceEEEEEEEEEEeCCCCEEEEEEEECCCHH
Confidence 48999999999999999999853 3333333 4444432 12 2467899999999999
Q ss_pred hhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 564 EFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 564 ~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
.|..+.+.|+. ..+++++|||+++ .+++ ..+..|+..+....+ .+|+++||||.|+.+..
T Consensus 64 ~~~~~~~~~~~---~~d~ii~v~d~~~---------~~s~-~~~~~~~~~~~~~~~-------~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 64 LYSDMVSNYWE---SPSVFILVYDVSN---------KASF-ENCSRWVNKVRTASK-------HMPGVLVGNKMDLADKA 123 (164)
T ss_pred HHHHHHHHHhC---CCCEEEEEEECcC---------HHHH-HHHHHHHHHHHHhCC-------CCCEEEEEECccccccc
Confidence 99999999999 8999999999974 3344 567899999877432 34799999999996543
Q ss_pred chhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 644 SQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 644 ~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
....+. .+.+...+. -.++.+|++++.|++++++.|.+.
T Consensus 124 ~~~~~~----~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 124 EVTDAQ----AQAFAQANQ------LKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred CCCHHH----HHHHHHHcC------CeEEEEeCCCCCChHHHHHHHHHH
Confidence 222221 122222322 246899999999999999888653
No 78
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.66 E-value=1.5e-15 Score=161.92 Aligned_cols=163 Identities=18% Similarity=0.248 Sum_probs=111.7
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|.+|+|||||++++..+ +...+.|++.. .... ...+.+..+.+.+||++|++.|..+++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-------------~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-------------HYAV-SVTVGGKQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-------------eeEE-EEEECCEEEEEEEEeCCCccccccccc
Confidence 48999999999999999999877 54444443321 0011 112334567899999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhH--
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQ-- 648 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~-- 648 (1363)
.++. ...++++|||+++ .+.++.....|+..++...+ ..|+++||||.|+...+.....
T Consensus 67 ~~~~---~~~~~ilv~~~~~---------~~s~~~~~~~~~~~l~~~~~-------~~piivv~nK~Dl~~~~~~~~~~~ 127 (174)
T cd04135 67 LSYP---MTDVFLICFSVVN---------PASFQNVKEEWVPELKEYAP-------NVPYLLVGTQIDLRDDPKTLARLN 127 (174)
T ss_pred ccCC---CCCEEEEEEECCC---------HHHHHHHHHHHHHHHHhhCC-------CCCEEEEeEchhhhcChhhHHHHh
Confidence 9999 8899999999974 45554445689888876422 2379999999998643211100
Q ss_pred -----HH-HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 649 -----LT-VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 649 -----~~-~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
.+ .+..+.+...++. ..+|.+||+++.|++++++.+...
T Consensus 128 ~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 128 DMKEKPVTVEQGQKLAKEIGA-----HCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred hccCCCCCHHHHHHHHHHcCC-----CEEEEecCCcCCCHHHHHHHHHHH
Confidence 00 0111222223221 247899999999999999988653
No 79
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.66 E-value=1e-15 Score=163.40 Aligned_cols=161 Identities=19% Similarity=0.290 Sum_probs=110.0
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|++|+|||||++++..+ |...+.||... ...+ .....+..+++.+||++||+.|..+++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-------------~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD-------------NFSV-VVLVDGKPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-------------eeeE-EEEECCEEEEEEEEECCCChhhccccc
Confidence 48999999999999999999865 54444333211 0001 112334578999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch-----
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ----- 645 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~----- 645 (1363)
.+++ ...++++|||+++ .++++....+|+..++...+ ..|+++||||.|+......
T Consensus 67 ~~~~---~a~~~i~v~d~~~---------~~sf~~~~~~~~~~~~~~~~-------~~piilv~nK~Dl~~~~~~~~~~~ 127 (173)
T cd04130 67 LCYP---DTDVFLLCFSVVN---------PSSFQNISEKWIPEIRKHNP-------KAPIILVGTQADLRTDVNVLIQLA 127 (173)
T ss_pred cccC---CCcEEEEEEECCC---------HHHHHHHHHHHHHHHHhhCC-------CCCEEEEeeChhhccChhHHHHHh
Confidence 9999 8999999999984 44554445689999886432 2479999999998643210
Q ss_pred ---hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 646 ---DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 646 ---~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
..+-..+....+.+.+. ...++++||+++.|++++++.+.
T Consensus 128 ~~~~~~v~~~~~~~~a~~~~-----~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 128 RYGEKPVSQSRAKALAEKIG-----ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred hcCCCCcCHHHHHHHHHHhC-----CCeEEEEeCCCCCCHHHHHHHHH
Confidence 00000011122222221 13578999999999999998764
No 80
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.66 E-value=1.2e-15 Score=160.49 Aligned_cols=153 Identities=16% Similarity=0.316 Sum_probs=110.1
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchhhhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y~~ 567 (1363)
|++++|.+++|||||++++.+. +...+. .|.|.+.. .+.+..+++.+||++||+.|+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 64 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQ-----------------ATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS 64 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCC-----------------CceeeeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 8999999999999999999876 332222 23343322 2334567899999999999999
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
+++.++. ...++++|||+++ ++++ +.+..|+..+....+. ..||++|+||+|+........
T Consensus 65 ~~~~~~~---~~~~ii~v~d~~~---------~~s~-~~~~~~~~~~~~~~~~------~~~iilv~nK~D~~~~~~~~~ 125 (161)
T cd01861 65 LIPSYIR---DSSVAVVVYDITN---------RQSF-DNTDKWIDDVRDERGN------DVIIVLVGNKTDLSDKRQVST 125 (161)
T ss_pred HHHHHhc---cCCEEEEEEECcC---------HHHH-HHHHHHHHHHHHhCCC------CCEEEEEEEChhccccCccCH
Confidence 9999999 8899999999974 3444 5668899988764321 247999999999964332222
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
++ ...+...+ + ..++.+||+++.|+++++..|.+
T Consensus 126 ~~----~~~~~~~~-~-----~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 126 EE----GEKKAKEL-N-----AMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred HH----HHHHHHHh-C-----CEEEEEeCCCCCCHHHHHHHHHH
Confidence 21 12222222 1 24688999999999999988865
No 81
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.65 E-value=2.8e-15 Score=159.32 Aligned_cols=160 Identities=17% Similarity=0.258 Sum_probs=112.8
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~ 564 (1363)
..+|++++|++++|||||++++..+ +...+. +|.|++.. .+.++.+++.+||++||+.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 66 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLF-----------------HTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcC-----------------CceeeEEEEEEEEECCeEEEEEEEeCCChHH
Confidence 4589999999999999999999866 332222 24444422 2446788999999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|..++..+++ ...++++|||+++ .+.+ +.+..|...+....... .....|+++||||.|+.. ..
T Consensus 67 ~~~~~~~~~~---~~d~~i~v~d~~~---------~~s~-~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~-~~ 130 (170)
T cd04116 67 FRSLRTPFYR---GSDCCLLTFAVDD---------SQSF-QNLSNWKKEFIYYADVK--EPESFPFVVLGNKNDIPE-RQ 130 (170)
T ss_pred HHHhHHHHhc---CCCEEEEEEECCC---------HHHH-HhHHHHHHHHHHhcccc--cCCCCcEEEEEECccccc-cc
Confidence 9999999999 8899999999974 2333 56688998776532211 112347999999999862 22
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...++ .+++.+.+. ...++++||+++.|++++++.+.+
T Consensus 131 ~~~~~----~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 131 VSTEE----AQAWCRENG-----DYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred cCHHH----HHHHHHHCC-----CCeEEEEECCCCCCHHHHHHHHHh
Confidence 22222 222323332 125689999999999999987754
No 82
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.65 E-value=2.7e-15 Score=160.19 Aligned_cols=161 Identities=17% Similarity=0.265 Sum_probs=110.5
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
.|++++|++|+|||||++++.++ +...+.|+++. .....+ .+.++.+.+.+||++||+.|..+++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~-------------~~~~~~-~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-------------NYVADI-EVDGKQVELALWDTAGQEDYDRLRP 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc-------------ceEEEE-EECCEEEEEEEEeCCCchhhhhccc
Confidence 59999999999999999999987 44434343221 111122 3445678999999999999999998
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. ...++++|||+++ .+.++....+|+..++...+ ..|+++||||.|+...... .++.
T Consensus 68 ~~~~---~~d~~i~v~~~~~---------~~s~~~~~~~~~~~~~~~~~-------~~piilv~nK~Dl~~~~~~-~~~i 127 (175)
T cd01870 68 LSYP---DTDVILMCFSIDS---------PDSLENIPEKWTPEVKHFCP-------NVPIILVGNKKDLRNDEHT-RREL 127 (175)
T ss_pred cccC---CCCEEEEEEECCC---------HHHHHHHHHHHHHHHHhhCC-------CCCEEEEeeChhcccChhh-hhhh
Confidence 8888 7889999999974 34454444689988876332 2379999999998642211 0000
Q ss_pred ---------HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 ---------VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ---------~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
....+++...+.. ..++.+||+++.|++++++.|..
T Consensus 128 ~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 128 AKMKQEPVKPEEGRDMANKIGA-----FGYMECSAKTKEGVREVFEMATR 172 (175)
T ss_pred hhccCCCccHHHHHHHHHHcCC-----cEEEEeccccCcCHHHHHHHHHH
Confidence 0111222222211 25789999999999999998865
No 83
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.65 E-value=1.5e-15 Score=153.84 Aligned_cols=161 Identities=20% Similarity=0.333 Sum_probs=114.3
Q ss_pred CCceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCch
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQH 563 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe 563 (1363)
..-+||+++|++|+|||||++++... |+..+..| .|.+..+ ++++.+++.||||||||
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaT-----------------IgadFltKev~Vd~~~vtlQiWDTAGQE 69 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKAT-----------------IGADFLTKEVQVDDRSVTLQIWDTAGQE 69 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccc-----------------cchhheeeEEEEcCeEEEEEEEecccHH
Confidence 34589999999999999999999987 66555444 4433322 34778999999999999
Q ss_pred hhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhh-chhhhhccCCCeEEEEEeccCCCCC
Q 000665 564 EFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSN-SRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 564 ~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~-~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
.|.++--.|++ .++.-++|||+.+ ++++ +.+..|=+..--+ .|.. .... |.||+|||+|....
T Consensus 70 RFqsLg~aFYR---gaDcCvlvydv~~---------~~Sf-e~L~~Wr~EFl~qa~~~~--Pe~F-PFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 70 RFQSLGVAFYR---GADCCVLVYDVNN---------PKSF-ENLENWRKEFLIQASPQD--PETF-PFVILGNKIDVDGG 133 (210)
T ss_pred Hhhhcccceec---CCceEEEEeecCC---------hhhh-ccHHHHHHHHHHhcCCCC--CCcc-cEEEEcccccCCCC
Confidence 99999999999 8899999999974 3333 5668887544332 2221 1112 69999999999642
Q ss_pred --CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 643 --PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 643 --~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+.+...++ +.....-+++ +.|++||+...+|+..|..+.+
T Consensus 134 ~~r~VS~~~A----q~WC~s~gni-----pyfEtSAK~~~NV~~AFe~ia~ 175 (210)
T KOG0394|consen 134 KSRQVSEKKA----QTWCKSKGNI-----PYFETSAKEATNVDEAFEEIAR 175 (210)
T ss_pred ccceeeHHHH----HHHHHhcCCc-----eeEEecccccccHHHHHHHHHH
Confidence 22332222 2222222333 4699999999999999987765
No 84
>PLN03118 Rab family protein; Provisional
Probab=99.65 E-value=2.2e-15 Score=166.27 Aligned_cols=161 Identities=16% Similarity=0.226 Sum_probs=113.3
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEE--E--EEecCceEEEEEecCCchh
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKI--K--TLKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i--~--~~~~~~~~l~iWDfaGQe~ 564 (1363)
...+|++++|.+|||||||+++|..+....+ ..|.|.+. . .+.+..+.+.+||++||+.
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 74 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDL-----------------APTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCc-----------------CCCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 3458999999999999999999997632222 22444433 2 2335568899999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|..+...|++ ...++++|||+++ .++++..-.+|...+....+. ...|+++||||.|+.....
T Consensus 75 ~~~~~~~~~~---~~d~~vlv~D~~~---------~~sf~~~~~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~ 137 (211)
T PLN03118 75 FRTLTSSYYR---NAQGIILVYDVTR---------RETFTNLSDVWGKEVELYSTN-----QDCVKMLVGNKVDRESERD 137 (211)
T ss_pred hHHHHHHHHh---cCCEEEEEEECCC---------HHHHHHHHHHHHHHHHHhcCC-----CCCCEEEEEECccccccCc
Confidence 9999999999 8899999999974 455544456788877653221 1236899999999965433
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
...++. ..+...+. -.+|++|++++.|++++++.|.+.+
T Consensus 138 i~~~~~----~~~~~~~~------~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 138 VSREEG----MALAKEHG------CLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred cCHHHH----HHHHHHcC------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 222221 11222221 2468999999999999999887644
No 85
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=2.4e-15 Score=159.39 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=111.6
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|++|||||||++++..+ +... .|+.. ...|..+ ...+..+++.+||++|++.|+..+.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~-----------~~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVL-----------PEITIPA---DVTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcc-----------cceEeee---eecCCeEEEEEEeCCCchhhhHHHh
Confidence 38999999999999999999976 4321 11100 0011111 2235678999999999999999888
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. ...++++|||+++ +++++....+|+..++...+ ..||++||||+|+.+..... ..
T Consensus 66 ~~~~---~ad~~ilv~d~~~---------~~s~~~~~~~~~~~i~~~~~-------~~pviiv~nK~Dl~~~~~~~--~~ 124 (166)
T cd01893 66 AEIR---KANVICLVYSVDR---------PSTLERIRTKWLPLIRRLGV-------KVPIILVGNKSDLRDGSSQA--GL 124 (166)
T ss_pred hhcc---cCCEEEEEEECCC---------HHHHHHHHHHHHHHHHHhCC-------CCCEEEEEEchhcccccchh--HH
Confidence 8888 7889999999874 45554444689999876432 34799999999996543211 11
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
.+.+..+..+|... ..++.+|++++.|++++++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 125 EEEMLPIMNEFREI----ETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred HHHHHHHHHHHhcc----cEEEEeccccccCHHHHHHHHHHH
Confidence 12223334444322 257899999999999999988763
No 86
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.65 E-value=1e-15 Score=151.24 Aligned_cols=158 Identities=15% Similarity=0.237 Sum_probs=119.2
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE----EE-ecCceEEEEEecCCchhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TL-KDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~-~~~~~~l~iWDfaGQe~y 565 (1363)
.+++++|+.-||||||++.+.++ |..-. +.|+|++.. +. .+..+++.+||+||||.|
T Consensus 9 frlivigdstvgkssll~~ft~gkfaels-----------------dptvgvdffarlie~~pg~riklqlwdtagqerf 71 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELS-----------------DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccC-----------------CCccchHHHHHHHhcCCCcEEEEEEeeccchHHH
Confidence 68999999999999999999987 43322 347776632 12 357899999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
+++..-|++ ..-..++|||+++. +.+ +.+..|+...+.+... -.++...+||+|.|+.+.+++
T Consensus 72 rsitksyyr---nsvgvllvyditnr---------~sf-ehv~~w~~ea~m~~q~----P~k~VFlLVGhKsDL~SqRqV 134 (213)
T KOG0091|consen 72 RSITKSYYR---NSVGVLLVYDITNR---------ESF-EHVENWVKEAAMATQG----PDKVVFLLVGHKSDLQSQRQV 134 (213)
T ss_pred HHHHHHHhh---cccceEEEEeccch---------hhH-HHHHHHHHHHHHhcCC----CCeeEEEEeccccchhhhccc
Confidence 999999999 67779999999852 223 6669999988775431 125567899999999887777
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
..+++....+.... ..+++|++++.||++-++.|.+.+
T Consensus 135 t~EEaEklAa~hgM----------~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 135 TAEEAEKLAASHGM----------AFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred cHHHHHHHHHhcCc----------eEEEecccCCCcHHHHHHHHHHHH
Confidence 76655333322211 347889999999999999887643
No 87
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.64 E-value=1.3e-15 Score=162.92 Aligned_cols=159 Identities=14% Similarity=0.228 Sum_probs=109.2
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
.+|++++|.+|+|||||++++..+ +. .+ .+|.|+++..+..+.+++.+||++||+.|..++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~-----------------~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 74 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TT-----------------IPTIGFNVETVTYKNISFTVWDVGGQDKIRPLW 74 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-Cc-----------------CCccccceEEEEECCEEEEEEECCCChhhHHHH
Confidence 479999999999999999999754 31 11 236677776666678999999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
+.|+. ...++|+|||+++ ++.+ +....|+..+.... ....+||+|||||.|+..... .++
T Consensus 75 ~~~~~---~ad~ii~v~D~t~---------~~s~-~~~~~~l~~~~~~~-----~~~~~piilv~NK~Dl~~~~~--~~~ 134 (175)
T smart00177 75 RHYYT---NTQGLIFVVDSND---------RDRI-DEAREELHRMLNED-----ELRDAVILVFANKQDLPDAMK--AAE 134 (175)
T ss_pred HHHhC---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHhhCH-----hhcCCcEEEEEeCcCcccCCC--HHH
Confidence 99999 8899999999984 3344 33345555554321 112358999999999864321 111
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
..+.+. ........-.++.+||++|.|++++++.|.+.
T Consensus 135 ---i~~~~~--~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 135 ---ITEKLG--LHSIRDRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred ---HHHHhC--ccccCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 111111 00111111235679999999999999988653
No 88
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.64 E-value=1.9e-15 Score=159.30 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=109.9
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
.+|++++|++|+|||||++++.+. +...+.|+++. .-.....+.+..+.+.+||++||+.|..++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~--------------~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED--------------SYTKQCEIDGQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc--------------eEEEEEEECCEEEEEEEEECCCCcchhHHH
Confidence 479999999999999999999876 33222222110 011122244556889999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
+.++. ....+++|||+++ ..++ +.+..|+..+..... ....|+++|+||+|+........+.
T Consensus 68 ~~~~~---~~~~~ilv~d~~~---------~~s~-~~~~~~~~~~~~~~~-----~~~~piiiv~NK~Dl~~~~~~~~~~ 129 (164)
T cd04145 68 EQYMR---TGEGFLLVFSVTD---------RGSF-EEVDKFHTQILRVKD-----RDEFPMILVGNKADLEHQRKVSREE 129 (164)
T ss_pred HHHHh---hCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHHhC-----CCCCCEEEEeeCccccccceecHHH
Confidence 99999 8899999999974 3333 556778877765321 1234799999999996433222221
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
. ..+...+. -.++++||+++.|++++++.|.+
T Consensus 130 ~----~~~~~~~~------~~~~~~Sa~~~~~i~~l~~~l~~ 161 (164)
T cd04145 130 G----QELARKLK------IPYIETSAKDRLNVDKAFHDLVR 161 (164)
T ss_pred H----HHHHHHcC------CcEEEeeCCCCCCHHHHHHHHHH
Confidence 1 22222221 14689999999999999988865
No 89
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.64 E-value=1.9e-15 Score=159.42 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=109.9
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|.+|+|||||++++..+ +...+.|+++ ..........+..+.+.+||++||+.|+.+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~--------------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE--------------DFYRKEIEVDSSPSVLEILDTAGTEQFASMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh--------------heEEEEEEECCEEEEEEEEECCCcccccchHH
Confidence 69999999999999999999876 4333222211 01111222335567899999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. .+.++++|||+++ .+.+ ..+..|+..+..... ....|+++||||+|+........++
T Consensus 68 ~~~~---~ad~~i~v~d~~~---------~~s~-~~~~~~~~~~~~~~~-----~~~~piviv~nK~Dl~~~~~~~~~~- 128 (163)
T cd04176 68 LYIK---NGQGFIVVYSLVN---------QQTF-QDIKPMRDQIVRVKG-----YEKVPIILVGNKVDLESEREVSSAE- 128 (163)
T ss_pred HHHh---hCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcC-----CCCCCEEEEEECccchhcCccCHHH-
Confidence 9999 8999999999984 3344 556778887765321 1234799999999986433222211
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...+...+. .+++++||+++.|+++++..|.+
T Consensus 129 ---~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 129 ---GRALAEEWG------CPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ---HHHHHHHhC------CEEEEecCCCCCCHHHHHHHHHH
Confidence 122322321 24689999999999999987764
No 90
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.64 E-value=2.5e-15 Score=163.76 Aligned_cols=148 Identities=19% Similarity=0.311 Sum_probs=108.0
Q ss_pred cCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEE----ecCceEEEEEecCCchhhhhcccc
Q 000665 497 CGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL----KDEDTRISIWNLAGQHEFYSLHDL 571 (1363)
Q Consensus 497 vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~----~~~~~~l~iWDfaGQe~y~~th~~ 571 (1363)
+|++|||||||++++..+ |...+.| |.|+++... .++.+++.|||++||+.|..+.+.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~-----------------Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~ 63 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVA-----------------TLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDG 63 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCC-----------------ceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHH
Confidence 699999999999999965 4333333 555554433 356799999999999999999999
Q ss_pred ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHH
Q 000665 572 MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTV 651 (1363)
Q Consensus 572 Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~ 651 (1363)
|++ ...++++|||+++ ..++ ..+..|+..|+...+ ..|++|||||+|+... ....+.
T Consensus 64 ~~~---~ad~~ilV~D~t~---------~~S~-~~i~~w~~~i~~~~~-------~~piilvgNK~Dl~~~-~v~~~~-- 120 (200)
T smart00176 64 YYI---QGQCAIIMFDVTA---------RVTY-KNVPNWHRDLVRVCE-------NIPIVLCGNKVDVKDR-KVKAKS-- 120 (200)
T ss_pred Hhc---CCCEEEEEEECCC---------hHHH-HHHHHHHHHHHHhCC-------CCCEEEEEECcccccc-cCCHHH--
Confidence 999 8899999999985 2344 556789999986432 3489999999998532 122111
Q ss_pred HHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 652 SSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 652 ~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
. .+.... + -.+|.+||+++.||+++|..|.+.+
T Consensus 121 --~-~~~~~~-~-----~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 121 --I-TFHRKK-N-----LQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred --H-HHHHHc-C-----CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 122121 1 2468999999999999999987643
No 91
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.64 E-value=3.1e-15 Score=157.42 Aligned_cols=156 Identities=16% Similarity=0.250 Sum_probs=105.9
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|.+++|||||++++..+ +. .+. .|.|+++.....+.+.+.+||++||+.|..+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~-----------------pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTI-----------------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccC-----------------CCCCcceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 48999999999999999999754 32 122 255655555555789999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.|+. ...++++|||+++ ...+ .....|+..+.... ....+|++|||||.|+..... .+
T Consensus 63 ~~~~---~ad~~i~v~D~~~---------~~s~-~~~~~~~~~~~~~~-----~~~~~piilv~NK~Dl~~~~~--~~-- 120 (159)
T cd04150 63 HYFQ---NTQGLIFVVDSND---------RERI-GEAREELQRMLNED-----ELRDAVLLVFANKQDLPNAMS--AA-- 120 (159)
T ss_pred HHhc---CCCEEEEEEeCCC---------HHHH-HHHHHHHHHHHhcH-----HhcCCCEEEEEECCCCCCCCC--HH--
Confidence 9999 8999999999974 2334 33345555543311 112457999999999853211 11
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
+..+.+. .....+..-.++.+|+++|.|++++++.|.
T Consensus 121 -~i~~~~~--~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 121 -EVTDKLG--LHSLRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred -HHHHHhC--ccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 1112111 111111112467899999999999998875
No 92
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.63 E-value=3.3e-15 Score=157.37 Aligned_cols=155 Identities=18% Similarity=0.367 Sum_probs=111.8
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|.+++|||||++++.+. +.... .+|.|.+.. .+.+..+++.+||++|++.|.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 63 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY-----------------KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------CCceeeEEEEEEEEECCEEEEEEEEECCChHHHH
Confidence 48999999999999999999866 32221 124443332 223456799999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
...+.|+. ...++++|||+++ +.++ +.+..|+..+...... .+|+++|+||.|+.......
T Consensus 64 ~~~~~~~~---~~d~~ilv~d~~~---------~~s~-~~~~~~l~~~~~~~~~------~~pivvv~nK~D~~~~~~~~ 124 (164)
T smart00175 64 SITSSYYR---GAVGALLVYDITN---------RESF-ENLKNWLKELREYADP------NVVIMLVGNKSDLEDQRQVS 124 (164)
T ss_pred HHHHHHhC---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCCC------CCeEEEEEEchhcccccCCC
Confidence 99999999 8999999999974 3444 5567899988774422 45899999999986533223
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
.+.+ +.+.+++. . .++++|++++.|++++++.|.+.
T Consensus 125 ~~~~----~~~~~~~~-~-----~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 125 REEA----EAFAEEHG-L-----PFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred HHHH----HHHHHHcC-C-----eEEEEeCCCCCCHHHHHHHHHHH
Confidence 2222 22222321 1 37899999999999999988753
No 93
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.63 E-value=4.4e-15 Score=160.68 Aligned_cols=165 Identities=16% Similarity=0.245 Sum_probs=111.1
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
+.|++++|++|+|||||++++..+ +...+.+++.. .-.....+.+..+.+.+||++||+.|..++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~--------------~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~ 66 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFE--------------NYVTDCRVDGKPVQLALWDTAGQEEYERLR 66 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccc--------------eEEEEEEECCEEEEEEEEECCCChhccccc
Confidence 369999999999999999999855 43322222110 001111233556789999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh---
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD--- 646 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~--- 646 (1363)
+.+++ ...++++|||+++ .+.++..-..|+..|+.+.++ .||++||||+|+.......
T Consensus 67 ~~~~~---~a~~~llv~~i~~---------~~s~~~~~~~~~~~i~~~~~~-------~piilvgnK~Dl~~~~~~~~~~ 127 (187)
T cd04129 67 PLSYS---KAHVILIGFAVDT---------PDSLENVRTKWIEEVRRYCPN-------VPVILVGLKKDLRQDAVAKEEY 127 (187)
T ss_pred hhhcC---CCCEEEEEEECCC---------HHHHHHHHHHHHHHHHHhCCC-------CCEEEEeeChhhhhCccccccc
Confidence 98888 8899999999973 344534345899999875433 3799999999985421100
Q ss_pred ---hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 647 ---MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 647 ---~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
.....+..+.+.+.++. ..+|.+||+++.|++++++.+.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 128 RTQRFVPIQQGKRVAKEIGA-----KKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred ccCCcCCHHHHHHHHHHhCC-----cEEEEccCCCCCCHHHHHHHHHHHH
Confidence 00000112233333321 2468999999999999999887643
No 94
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.63 E-value=3.4e-15 Score=158.89 Aligned_cols=160 Identities=12% Similarity=0.090 Sum_probs=112.0
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CC-CCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FS-SSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~-~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~ 567 (1363)
..+|++++|++|||||||++++.++ |. ..+.||++. ...+....+.+..+.+.+||+|||+.|..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~-------------~~~~~~~~~~~~~~~l~~~d~~g~~~~~~ 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKP-------------RYAVNTVEVYGQEKYLILREVGEDEVAIL 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCc-------------ceEEEEEEECCeEEEEEEEecCCcccccc
Confidence 4579999999999999999999976 54 444443321 12223334446668899999999999999
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
+.+.++. ...++++|||+++ ++++ +.+..|++.+... ...|+++|+||+|+........
T Consensus 70 ~~~~~~~---~~d~~llv~d~~~---------~~s~-~~~~~~~~~~~~~--------~~~p~iiv~NK~Dl~~~~~~~~ 128 (169)
T cd01892 70 LNDAELA---ACDVACLVYDSSD---------PKSF-SYCAEVYKKYFML--------GEIPCLFVAAKADLDEQQQRYE 128 (169)
T ss_pred cchhhhh---cCCEEEEEEeCCC---------HHHH-HHHHHHHHHhccC--------CCCeEEEEEEcccccccccccc
Confidence 9998888 8999999999874 3333 4557888765431 1347999999999864322111
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
.+ .+++.+.++- ..++.+||+++.|++++++.|.+.
T Consensus 129 ~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~lf~~l~~~ 164 (169)
T cd01892 129 VQ----PDEFCRKLGL-----PPPLHFSSKLGDSSNELFTKLATA 164 (169)
T ss_pred cC----HHHHHHHcCC-----CCCEEEEeccCccHHHHHHHHHHH
Confidence 11 2333334321 234789999999999999888763
No 95
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.63 E-value=3e-15 Score=159.75 Aligned_cols=157 Identities=15% Similarity=0.218 Sum_probs=109.4
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
...|++++|.+|+|||||++++.+..... ...|.|+.+..+..+.+.+.+||++||+.|+..+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----------------~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 75 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT-----------------ISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYW 75 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-----------------cCCccccceEEEEECCEEEEEEECCCCHHHHHHH
Confidence 34799999999999999999998652211 1236676666665567899999999999999988
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
+.++. ...++++|||+++ ...+ .....|+..+.... ....+|++||+||+|+.... ..++
T Consensus 76 ~~~~~---~~d~~i~v~d~~~---------~~s~-~~~~~~~~~~~~~~-----~~~~~p~iiv~nK~Dl~~~~--~~~~ 135 (173)
T cd04154 76 RNYFE---STDALIWVVDSSD---------RLRL-DDCKRELKELLQEE-----RLAGATLLILANKQDLPGAL--SEEE 135 (173)
T ss_pred HHHhC---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHhCh-----hhcCCCEEEEEECcccccCC--CHHH
Confidence 88888 8899999999974 2233 34456766654321 11245899999999996432 2121
Q ss_pred HHHHHHHHHHHhccc--cCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGF--VDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~--~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
+.+.+... -...-++|.+||++|.|++++++.|.
T Consensus 136 -------~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 136 -------IREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred -------HHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 11111100 01112579999999999999998875
No 96
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.63 E-value=3.7e-15 Score=156.37 Aligned_cols=158 Identities=15% Similarity=0.272 Sum_probs=109.6
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|+.++|.+|+|||||++++... +.....+++.. +.......+.+..+.+.+||++||+.|+..++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQA-------------SFFQKTVNIGGKRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccce-------------eEEEEEEEECCEEEEEEEEECCchHHHHHhhH
Confidence 48999999999999999999976 32221111110 11111122234567899999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.|+. ...++++|||+++ .+.+ +.+..|+..+....+. ..|+++|+||.|+........+.
T Consensus 68 ~~~~---~~~~~i~v~d~~~---------~~s~-~~~~~~~~~i~~~~~~------~~piiiv~nK~D~~~~~~~~~~~- 127 (162)
T cd04123 68 IYYR---DADGAILVYDITD---------ADSF-QKVKKWIKELKQMRGN------NISLVIVGNKIDLERQRVVSKSE- 127 (162)
T ss_pred HHhc---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCCC------CCeEEEEEECcccccccCCCHHH-
Confidence 9998 8899999999974 2333 6678899888764322 34799999999997433222222
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
++.+...+. ..++++|++++.|++++++.|.+
T Consensus 128 ---~~~~~~~~~------~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 128 ---AEEYAKSVG------AKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred ---HHHHHHHcC------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 222222221 24689999999999999998865
No 97
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.63 E-value=2.7e-16 Score=149.80 Aligned_cols=164 Identities=18% Similarity=0.348 Sum_probs=125.4
Q ss_pred EecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchhhhhcc
Q 000665 495 FFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 495 ~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
|++|++++|||+|+-+++.+ |-.. ...+|+||+... ..++.+++.+||+||||.|++..
T Consensus 1 mllgds~~gktcllir~kdgafl~~----------------~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt 64 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAG----------------NFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVT 64 (192)
T ss_pred CccccCccCceEEEEEeccCceecC----------------ceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhh
Confidence 57899999999999888876 3211 123588887653 45789999999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
..|++ .+...+++||+.++ -++ +...-||..|+..+++++ .+.++|||+|+.+++.+..++
T Consensus 65 ~ayyr---da~allllydiank------asf----dn~~~wlsei~ey~k~~v------~l~llgnk~d~a~er~v~~dd 125 (192)
T KOG0083|consen 65 HAYYR---DADALLLLYDIANK------ASF----DNCQAWLSEIHEYAKEAV------ALMLLGNKCDLAHERAVKRDD 125 (192)
T ss_pred Hhhhc---ccceeeeeeecccc------hhH----HHHHHHHHHHHHHHHhhH------hHhhhccccccchhhccccch
Confidence 89999 88999999999863 244 445899999999888876 689999999997655444433
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHhhcCch
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRTILQRVPRV 703 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~i~~~~P~~ 703 (1363)
. +++.+.|+- ++.+.|+++|-+++..|-.|.+..+.+....|.-
T Consensus 126 g----~kla~~y~i------pfmetsaktg~nvd~af~~ia~~l~k~~~~~~~~ 169 (192)
T KOG0083|consen 126 G----EKLAEAYGI------PFMETSAKTGFNVDLAFLAIAEELKKLKMGAPPE 169 (192)
T ss_pred H----HHHHHHHCC------CceeccccccccHhHHHHHHHHHHHHhccCCCCC
Confidence 3 455666641 4578999999999999988887665554444443
No 98
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.63 E-value=3.5e-15 Score=162.18 Aligned_cols=160 Identities=12% Similarity=0.200 Sum_probs=103.9
Q ss_pred ceeEEecCccccchHHHHH-HHhhc-C-----CCCCCcceeecccccccccCccCCcceE-----EEEEecCceEEEEEe
Q 000665 491 SCRVFFCGQEYAGKTTLCN-SISQN-F-----SSSKLPYIEQVRTLVNPVEQAVRPVGMK-----IKTLKDEDTRISIWN 558 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~-~L~~~-~-----~~~~~~t~~~~~~~~~p~~~~~~T~Gi~-----i~~~~~~~~~l~iWD 558 (1363)
.+|++++|++|||||||+. ++..+ + ...+.||++.+... ...++ ....++..+.+.+||
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~---------~~~~~~~~~~~~~~~~~~v~l~iwD 72 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQY---------RVCQEVLERSRDVVDGVSVSLRLWD 72 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccce---------eEEeeeccccceeeCCEEEEEEEEe
Confidence 3699999999999999995 55443 2 22333443210000 00000 012346789999999
Q ss_pred cCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHH-HHHHHHHHhhchhhhhccCCCeEEEEEecc
Q 000665 559 LAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDL-RYWLRFIVSNSRRAVQQCMLPNVTVVLTHY 637 (1363)
Q Consensus 559 faGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l-~~WL~~I~~~~~~av~~~~~p~VilVgTh~ 637 (1363)
+|||+.+ +.+.++. ...++++|||+++ .+++ +.+ ..|+..++...+ .+|++|||||.
T Consensus 73 TaG~~~~--~~~~~~~---~ad~iilv~d~t~---------~~Sf-~~~~~~w~~~i~~~~~-------~~piilvgNK~ 130 (195)
T cd01873 73 TFGDHDK--DRRFAYG---RSDVVLLCFSIAS---------PNSL-RNVKTMWYPEIRHFCP-------RVPVILVGCKL 130 (195)
T ss_pred CCCChhh--hhcccCC---CCCEEEEEEECCC---------hhHH-HHHHHHHHHHHHHhCC-------CCCEEEEEEch
Confidence 9999874 4566788 8999999999985 3444 344 479998876432 34799999999
Q ss_pred CCCCC-------------------CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 638 DKINQ-------------------PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 638 D~~~~-------------------~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
|+... +....+++ +.+.++++ -.+|++||+++.||+++|+.+.+
T Consensus 131 DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~----~~~a~~~~------~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 131 DLRYADLDEVNRARRPLARPIKNADILPPETG----RAVAKELG------IPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred hccccccchhhhcccccccccccCCccCHHHH----HHHHHHhC------CEEEEcCCCCCCCHHHHHHHHHH
Confidence 98531 11122222 23333332 14689999999999999988764
No 99
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.63 E-value=4.3e-15 Score=158.12 Aligned_cols=156 Identities=17% Similarity=0.302 Sum_probs=108.3
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~y 565 (1363)
.+|++++|++|+|||||++++..+ +...+ ..|.|++... +.+..+.+.+||++||+.|
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 64 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERT-----------------EATIGVDFRERTVEIDGERIKVQLWDTAGQERF 64 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcc-----------------ccceeEEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 369999999999999999999876 33222 2244544332 3356789999999999999
Q ss_pred h-hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 566 Y-SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 566 ~-~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
. .+.+.++. ...++++|||+++ ++.+ ..+..|+..+...... ...|+++||||.|+.....
T Consensus 65 ~~~~~~~~~~---~~d~~i~v~d~~~---------~~s~-~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~ 126 (170)
T cd04115 65 RKSMVQHYYR---NVHAVVFVYDVTN---------MASF-HSLPSWIEECEQHSLP-----NEVPRILVGNKCDLREQIQ 126 (170)
T ss_pred HHhhHHHhhc---CCCEEEEEEECCC---------HHHH-HhHHHHHHHHHHhcCC-----CCCCEEEEEECccchhhcC
Confidence 7 56788888 7888999999974 2333 5568899988764321 1347999999999865433
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCC---CCChhHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARS---SASVTKLTHHIRK 691 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~---~~~i~~L~~~L~~ 691 (1363)
...+. .+.+...+. -.++++||++ +.++++++..+.+
T Consensus 127 ~~~~~----~~~~~~~~~------~~~~e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 127 VPTDL----AQRFADAHS------MPLFETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred CCHHH----HHHHHHHcC------CcEEEEeccCCcCCCCHHHHHHHHHH
Confidence 22221 222333321 2468899999 6778888776654
No 100
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.63 E-value=3.4e-15 Score=168.08 Aligned_cols=164 Identities=16% Similarity=0.240 Sum_probs=111.1
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
.|++++|++|||||||++++..+ |...+.||++. .-....+..++.+.+.|||++|++.|..+++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d--------------~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIED--------------FHRKLYSIRGEVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhH--------------hEEEEEEECCEEEEEEEEECCCChhhhHHHH
Confidence 38999999999999999999866 54444444321 1112223445678999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhch---hhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSR---RAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~---~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
.++. ..+++|+|||+++ .+.+ +.+..|+..|...-. .........|++|||||+|+........
T Consensus 67 ~~~~---~ad~iIlVfdv~~---------~~Sf-~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~ 133 (247)
T cd04143 67 LSIL---TGDVFILVFSLDN---------RESF-EEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQR 133 (247)
T ss_pred HHhc---cCCEEEEEEeCCC---------HHHH-HHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCH
Confidence 8888 7899999999984 3334 556788877754210 0000112457999999999964333332
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+++ .+.+... . .-.++.+||+++.|++++++.|..
T Consensus 134 ~ei---~~~~~~~-~-----~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 134 DEV---EQLVGGD-E-----NCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred HHH---HHHHHhc-C-----CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 222 1111111 0 124689999999999999998875
No 101
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.63 E-value=4.6e-15 Score=157.49 Aligned_cols=162 Identities=20% Similarity=0.286 Sum_probs=113.5
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|.+|+|||||+++|.++ +...+.|+... +.. ....+.+..+++.+||++||++|..+++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD-------------NYS-ATVTVDGKQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-------------eeE-EEEEECCEEEEEEEEeCCCcccccccch
Confidence 48999999999999999999987 43333333221 011 1122335678999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh---
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM--- 647 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~--- 647 (1363)
.++. ...++++|||+++ ..++.....+|+..+....+ ..||++||||+|+........
T Consensus 67 ~~~~---~~~~~i~v~d~~~---------~~s~~~~~~~~~~~~~~~~~-------~~p~ivv~nK~Dl~~~~~~~~~~~ 127 (171)
T cd00157 67 LSYP---NTDVFLICFSVDS---------PSSFENVKTKWIPEIRHYCP-------NVPIILVGTKIDLRDDENTLKKLE 127 (171)
T ss_pred hhcC---CCCEEEEEEECCC---------HHHHHHHHHHHHHHHHhhCC-------CCCEEEEEccHHhhhchhhhhhcc
Confidence 9888 8999999999873 46666778899998887543 247999999999875432110
Q ss_pred ----HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 648 ----QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 648 ----~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
........++...+. . ..++.+|++++.|++++++.|.+
T Consensus 128 ~~~~~v~~~~~~~~~~~~~----~-~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 128 KGKEPITPEEGEKLAKEIG----A-IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred cCCCccCHHHHHHHHHHhC----C-eEEEEeecCCCCCHHHHHHHHhh
Confidence 000111122222221 1 25799999999999999988754
No 102
>PLN03108 Rab family protein; Provisional
Probab=99.62 E-value=4.5e-15 Score=163.67 Aligned_cols=155 Identities=15% Similarity=0.283 Sum_probs=112.1
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceE----EEEEecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMK----IKTLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~----i~~~~~~~~~l~iWDfaGQe~y 565 (1363)
.+|++++|++|+|||||++++... +...+.| |.|++ ...+.+..+.+.+||++|++.|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~-----------------ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~ 68 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----------------TIGVEFGARMITIDNKPIKLQIWDTAGQESF 68 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----------------CccceEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 479999999999999999999976 4432222 33433 2334456788999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
...++.++. ...++++|||+++ ...+ +.+..|+..+..... ...|+++|+||+|+.+.+..
T Consensus 69 ~~~~~~~~~---~ad~~vlv~D~~~---------~~s~-~~l~~~~~~~~~~~~------~~~piiiv~nK~Dl~~~~~~ 129 (210)
T PLN03108 69 RSITRSYYR---GAAGALLVYDITR---------RETF-NHLASWLEDARQHAN------ANMTIMLIGNKCDLAHRRAV 129 (210)
T ss_pred HHHHHHHhc---cCCEEEEEEECCc---------HHHH-HHHHHHHHHHHHhcC------CCCcEEEEEECccCccccCC
Confidence 999999998 7899999999974 3333 566789988765432 23479999999999654333
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..++. +++..++. -.++.+||+++.|+++++..+.+
T Consensus 130 ~~~~~----~~~~~~~~------~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 130 STEEG----EQFAKEHG------LIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred CHHHH----HHHHHHcC------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 32222 22222221 14689999999999999877754
No 103
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.62 E-value=8.4e-15 Score=155.66 Aligned_cols=160 Identities=21% Similarity=0.308 Sum_probs=110.7
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEE----EEEecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKI----KTLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i----~~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|.+++|||||++++.+. +..... .|.|.+. ..+.+..+.+++||++||+.|.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~-----------------~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 63 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-----------------ATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ 63 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcC-----------------CccceEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 48999999999999999999876 332222 2333322 2344567889999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
..++.++. ...++|+|||+.+ .+.+ +.+..|...+....... .-...|+++|+||.|+.......
T Consensus 64 ~~~~~~~~---~~d~~i~v~d~~~---------~~~~-~~~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~~~ 128 (172)
T cd01862 64 SLGVAFYR---GADCCVLVYDVTN---------PKSF-ESLDSWRDEFLIQASPS--DPENFPFVVLGNKIDLEEKRQVS 128 (172)
T ss_pred hHHHHHhc---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcCcc--CCCCceEEEEEECcccccccccC
Confidence 99999999 8999999999874 2333 55677887665433210 01134799999999997422222
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
.+. .+.+.+.++. ..+|.+||+++.|++++++.|.+.
T Consensus 129 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 129 TKK----AQQWCQSNGN-----IPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred HHH----HHHHHHHcCC-----ceEEEEECCCCCCHHHHHHHHHHH
Confidence 221 2223333321 257899999999999999988763
No 104
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.61 E-value=4.8e-15 Score=159.67 Aligned_cols=157 Identities=15% Similarity=0.222 Sum_probs=107.4
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
.+|++++|++++|||||++++..+ +.. + ..|.|.++..++.+.+.+.+||++||+.|...+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~-----------------~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 78 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-T-----------------IPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLW 78 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-c-----------------CCccccceEEEEECCEEEEEEECCCCHhHHHHH
Confidence 479999999999999999999754 321 1 236666666666678999999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
+.|+. ...++|+|||+++ .+.+.. ...|+..+.... ....+|++|||||.|+.... ..++
T Consensus 79 ~~~~~---~ad~iI~v~D~t~---------~~s~~~-~~~~l~~~~~~~-----~~~~~piilv~NK~Dl~~~~--~~~~ 138 (182)
T PTZ00133 79 RHYYQ---NTNGLIFVVDSND---------RERIGD-AREELERMLSED-----ELRDAVLLVFANKQDLPNAM--STTE 138 (182)
T ss_pred HHHhc---CCCEEEEEEeCCC---------HHHHHH-HHHHHHHHHhCH-----hhcCCCEEEEEeCCCCCCCC--CHHH
Confidence 99999 8899999999974 233422 344554443210 11246899999999985322 1111
Q ss_pred HHHHHHHHHHH-hccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 650 TVSSIQRLKDK-FQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 650 ~~~~~~~lr~~-f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..+.+... +... .-.++.+||++|.|++++++.|.+
T Consensus 139 ---i~~~l~~~~~~~~---~~~~~~~Sa~tg~gv~e~~~~l~~ 175 (182)
T PTZ00133 139 ---VTEKLGLHSVRQR---NWYIQGCCATTAQGLYEGLDWLSA 175 (182)
T ss_pred ---HHHHhCCCcccCC---cEEEEeeeCCCCCCHHHHHHHHHH
Confidence 11111111 1110 013457899999999999998875
No 105
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=1.1e-14 Score=154.40 Aligned_cols=155 Identities=22% Similarity=0.332 Sum_probs=110.8
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y 565 (1363)
..|++++|.+|+|||||++++..+ +...+ ..|.|++.. .+.+..+.+.+||++||+.|
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 69 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ-----------------GATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF 69 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------CCceeeEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 479999999999999999999865 32211 224443332 23355688999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
...++.|++ ...++++|||+++ ...+ +.+..|+..++...+. ..|+++||||.|+...+..
T Consensus 70 ~~~~~~~~~---~~d~~i~v~d~~~---------~~s~-~~~~~~~~~l~~~~~~------~~~~i~v~NK~D~~~~~~i 130 (169)
T cd04114 70 RSITQSYYR---SANALILTYDITC---------EESF-RCLPEWLREIEQYANN------KVITILVGNKIDLAERREV 130 (169)
T ss_pred HHHHHHHhc---CCCEEEEEEECcC---------HHHH-HHHHHHHHHHHHhCCC------CCeEEEEEECccccccccc
Confidence 999999999 8999999999874 2333 5667899988764332 2478999999998643322
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..+ ..+.+.+... ..++.+||+++.|++++++.|.+
T Consensus 131 ~~~----~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 131 SQQ----RAEEFSDAQD------MYYLETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred CHH----HHHHHHHHcC------CeEEEeeCCCCCCHHHHHHHHHH
Confidence 111 1222222221 34689999999999999998865
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.61 E-value=4.9e-15 Score=159.43 Aligned_cols=156 Identities=15% Similarity=0.271 Sum_probs=109.3
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
.+|++++|.+++|||||++++..+ +. . ..+|.|+++.....+.+.+++||++||+.|..++
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~-----------------~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~ 78 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-T-----------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 78 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-c-----------------ccCCcceeEEEEEECCEEEEEEECCCCHHHHHHH
Confidence 369999999999999999999754 21 1 1236777777776778999999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
+.|+. ...++++|||+++ .+++ ..+..|+..+.... ....+|++|||||.|+.... ..
T Consensus 79 ~~~~~---~a~~iI~V~D~s~---------~~s~-~~~~~~l~~~l~~~-----~~~~~piilv~NK~Dl~~~~--~~-- 136 (181)
T PLN00223 79 RHYFQ---NTQGLIFVVDSND---------RDRV-VEARDELHRMLNED-----ELRDAVLLVFANKQDLPNAM--NA-- 136 (181)
T ss_pred HHHhc---cCCEEEEEEeCCc---------HHHH-HHHHHHHHHHhcCH-----hhCCCCEEEEEECCCCCCCC--CH--
Confidence 99999 8899999999984 2333 23344555543311 11245899999999986432 11
Q ss_pred HHHHHHHHHHHhccccCCC--C-cEEEEcCCCCCChhHHHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFY--P-TVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~--~-~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
+++.+.++ ...+. . .++.+||++|.|++++++.|.+.
T Consensus 137 -----~~~~~~l~-l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 176 (181)
T PLN00223 137 -----AEITDKLG-LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
T ss_pred -----HHHHHHhC-ccccCCCceEEEeccCCCCCCHHHHHHHHHHH
Confidence 22222221 11110 1 24578999999999999988653
No 107
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.61 E-value=4e-15 Score=159.17 Aligned_cols=278 Identities=16% Similarity=0.167 Sum_probs=201.7
Q ss_pred HHHhccCCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCC-------ChHHHHHHHHHhCCCceEEEccCC
Q 000665 151 ASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSL-------TATPLISAVLARNRAMEVHVWSGE 223 (1363)
Q Consensus 151 ~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~-------~~~~~l~~~l~~~~~L~~L~Ls~n 223 (1363)
...+....++..++||+|.|+.+.+..+++.+++-.+|+..++|+-... .....+..++..|+.|+..+||.|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 3344445666777777777777777777777766666766666654211 123345666777777777777777
Q ss_pred CCcchhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhh---------CCCccE
Q 000665 224 NGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQ---------NQSLKE 294 (1363)
Q Consensus 224 ~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~---------n~~L~~ 294 (1363)
-++......+.+.+++.+.|.+|.|++|.+++.+...++.+|.. -+.|+.
T Consensus 103 ---------------------Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 103 ---------------------AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred ---------------------ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceE
Confidence 24555566777788888889999999998888777777766543 257888
Q ss_pred EEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHH
Q 000665 295 VILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIA 374 (1363)
Q Consensus 295 LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~ 374 (1363)
.....|++........+..+.....|+++.+..|.|...|+..++- +.+..+.+|+.|+|. .|.++-.|..
T Consensus 162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~-------~gl~y~~~LevLDlq--DNtft~~gS~ 232 (388)
T COG5238 162 VICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAF-------LGLFYSHSLEVLDLQ--DNTFTLEGSR 232 (388)
T ss_pred EEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHH-------HHHHHhCcceeeecc--ccchhhhhHH
Confidence 9999999888777777777777788999999999999998887753 122467889999997 7899999999
Q ss_pred HHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhh--CCCccEEEeecCCCCCChhHHHHHHHHHhc-CCCccEEecc
Q 000665 375 AILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQK--NASLRQLSLQGCKGVRGELVQQAIMETLQV-NPWIEDIDLE 451 (1363)
Q Consensus 375 ~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~--~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~-n~~L~~LdL~ 451 (1363)
+++.+++.++.|+.|.+.+| -++.+|...+...+.. +++|..|...+|....+......+....+. .|-|..|.+.
T Consensus 233 ~La~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~n 311 (388)
T COG5238 233 YLADALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERN 311 (388)
T ss_pred HHHHHhcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHc
Confidence 99999999999999999999 7888998888887755 788999999888732221111112222222 5677888888
Q ss_pred CCCCCCCC
Q 000665 452 RTPLKNSG 459 (1363)
Q Consensus 452 ~N~l~~~g 459 (1363)
+|.|....
T Consensus 312 gNr~~E~~ 319 (388)
T COG5238 312 GNRIKELA 319 (388)
T ss_pred cCcchhHH
Confidence 88887654
No 108
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.61 E-value=1.4e-14 Score=153.97 Aligned_cols=157 Identities=15% Similarity=0.223 Sum_probs=109.1
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLM 572 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~F 572 (1363)
|++++|.+++|||||++++.++....+ ..|.|+++..+..+.+.+.+||++||+.|...+..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~-----------------~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQP-----------------IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCc-----------------CCcCceeEEEEEECCEEEEEEECCCChhcchHHHHH
Confidence 689999999999999999987621111 236677777677788999999999999999888888
Q ss_pred cccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHH
Q 000665 573 FPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVS 652 (1363)
Q Consensus 573 lt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~ 652 (1363)
+. ....+++|+|+++ ++.+ ..+..|+..+..... ...+|++|||||.|+... ...+++
T Consensus 64 ~~---~ad~ii~V~D~s~---------~~s~-~~~~~~~~~~~~~~~-----~~~~piilv~NK~Dl~~~--~~~~~~-- 121 (169)
T cd04158 64 YL---NTQAVVFVVDSSH---------RDRV-SEAHSELAKLLTEKE-----LRDALLLIFANKQDVAGA--LSVEEM-- 121 (169)
T ss_pred hc---cCCEEEEEEeCCc---------HHHH-HHHHHHHHHHhcChh-----hCCCCEEEEEeCcCcccC--CCHHHH--
Confidence 88 7899999999974 2334 445778777764211 123579999999998532 222211
Q ss_pred HHHHHHHHhccccC-CCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 653 SIQRLKDKFQGFVD-FYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 653 ~~~~lr~~f~~~~~-i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+.+. .+.+... ..-.++++||+++.|++++++.|.+
T Consensus 122 --~~~~-~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~ 158 (169)
T cd04158 122 --TELL-SLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSR 158 (169)
T ss_pred --HHHh-CCccccCCCcEEEEeCcCCCCCCHHHHHHHHHH
Confidence 1111 1111100 0014567899999999999998865
No 109
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.60 E-value=1.9e-14 Score=152.82 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=110.5
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|.+|||||||++++.++ +...+.|+++ ........+.+..+.+.+||++||+.|..+++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~--------------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE--------------DSYRKQVEIDGRQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch--------------heEEEEEEECCEEEEEEEEeCCCcccchhhhH
Confidence 58999999999999999999976 4332222211 11112223445678999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. .+..+++|||+++ .+.+ +.+..|...+..... ....|+++||||.|+........++
T Consensus 68 ~~~~---~~~~~vlv~~~~~---------~~s~-~~~~~~~~~i~~~~~-----~~~~piiiv~nK~D~~~~~~~~~~~- 128 (168)
T cd04177 68 LYIK---SGQGFLLVYSVTS---------EASL-NELGELREQVLRIKD-----SDNVPMVLVGNKADLEDDRQVSRED- 128 (168)
T ss_pred HHHh---hCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhhC-----CCCCCEEEEEEChhccccCccCHHH-
Confidence 9999 7889999999974 3444 445778887765211 1234799999999986433222222
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...+..++.. .+++.+||+++.|++++++.+.+
T Consensus 129 ---~~~~~~~~~~-----~~~~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 129 ---GVSLSQQWGN-----VPFYETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred ---HHHHHHHcCC-----ceEEEeeCCCCCCHHHHHHHHHH
Confidence 1223333321 25789999999999999988865
No 110
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.60 E-value=2.1e-14 Score=156.64 Aligned_cols=162 Identities=13% Similarity=0.141 Sum_probs=105.7
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhc--
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSL-- 568 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~t-- 568 (1363)
+|++++|.++||||||++++.++ |...+.|+++. ........+.+..+.+.+||++|++.|..+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~-------------~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHR-------------RLYRPAVVLSGRVYDLHILDVPNMQRYPGTAG 67 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCcccc-------------ccceeEEEECCEEEEEEEEeCCCcccCCccch
Confidence 48999999999999999999876 55444443321 111122234566789999999997655322
Q ss_pred ------cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 569 ------HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 569 ------h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
....+. ...++++|||+++ .+++ +.+..|++.+...... ....+|+++||||+|+...
T Consensus 68 ~e~~~~~~~~~~---~ad~iilv~D~~~---------~~S~-~~~~~~~~~i~~~~~~---~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 68 QEWMDPRFRGLR---NSRAFILVYDICS---------PDSF-HYVKLLRQQILETRPA---GNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred hHHHHHHHhhhc---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhccc---CCCCCCEEEEEECcccccc
Confidence 122356 7899999999974 3344 5568888888764310 0124589999999999643
Q ss_pred CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 643 PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.....+. .+.+..+..+ -++|++||++|.|++++++.+.+
T Consensus 132 ~~~~~~~----~~~~~~~~~~-----~~~~e~Sak~g~~v~~lf~~i~~ 171 (198)
T cd04142 132 RFAPRHV----LSVLVRKSWK-----CGYLECSAKYNWHILLLFKELLI 171 (198)
T ss_pred ccccHHH----HHHHHHHhcC-----CcEEEecCCCCCCHHHHHHHHHH
Confidence 3222221 2222211111 25689999999999999988765
No 111
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.59 E-value=1.3e-14 Score=152.30 Aligned_cols=157 Identities=12% Similarity=0.195 Sum_probs=105.4
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLM 572 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~F 572 (1363)
|+.++|.+++|||||++++..+....+ ..|.|.++..++...+++.+||++|++.|..+++.|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-----------------IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-----------------CCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 689999999999999999976521111 125565565666678899999999999999999999
Q ss_pred cccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHH
Q 000665 573 FPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVS 652 (1363)
Q Consensus 573 lt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~ 652 (1363)
+. ...++++|+|+++ ..++.....+|...++... ....|++||+||+|+.... ... +
T Consensus 64 ~~---~~~~ii~v~d~~~---------~~~~~~~~~~~~~~~~~~~------~~~~piiiv~nK~Dl~~~~--~~~---~ 120 (158)
T cd04151 64 YS---NTDAIIYVVDSTD---------RDRLGTAKEELHAMLEEEE------LKGAVLLVFANKQDMPGAL--SEA---E 120 (158)
T ss_pred hc---CCCEEEEEEECCC---------HHHHHHHHHHHHHHHhchh------hcCCcEEEEEeCCCCCCCC--CHH---H
Confidence 99 8999999999874 2333233344444443211 1134799999999985322 111 1
Q ss_pred HHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 653 SIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 653 ~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..+.+... .......+++++||+++.|++++++.|.+
T Consensus 121 i~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 121 ISEKLGLS--ELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHhCcc--ccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 11111110 01111125899999999999999998754
No 112
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.59 E-value=2.9e-15 Score=158.03 Aligned_cols=162 Identities=20% Similarity=0.322 Sum_probs=119.5
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEE-ecCceEEEEEecCCchhhhh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL-KDEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~-~~~~~~l~iWDfaGQe~y~~ 567 (1363)
..+|+++||++++|||+|+.++..+ |...+.||+.+. + .. -..+ +++.+++.+||+|||++|.-
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdn--y---------s~---~v~V~dg~~v~L~LwDTAGqedYDr 68 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDN--Y---------SA---NVTVDDGKPVELGLWDTAGQEDYDR 68 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEcc--c---------eE---EEEecCCCEEEEeeeecCCCccccc
Confidence 3579999999999999999999888 888888876531 1 11 1233 47889999999999999999
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
.+++-++ ...+||++|++. +++.+++.-..|+..|+.+.|+ -||||||||.|+..++.. .
T Consensus 69 lRplsY~---~tdvfl~cfsv~---------~p~S~~nv~~kW~pEi~~~cp~-------vpiiLVGtk~DLr~d~~~-~ 128 (198)
T KOG0393|consen 69 LRPLSYP---QTDVFLLCFSVV---------SPESFENVKSKWIPEIKHHCPN-------VPIILVGTKADLRDDPST-L 128 (198)
T ss_pred ccccCCC---CCCEEEEEEEcC---------ChhhHHHHHhhhhHHHHhhCCC-------CCEEEEeehHHhhhCHHH-H
Confidence 9999888 889999999987 4677777788999999986554 389999999999743211 0
Q ss_pred HHHH---------HHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 648 QLTV---------SSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 648 ~~~~---------~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
++.. +..+.+.++.+. -..+++|+.+..|+++.|+.-.
T Consensus 129 ~~l~~~~~~~Vt~~~g~~lA~~iga-----~~y~EcSa~tq~~v~~vF~~a~ 175 (198)
T KOG0393|consen 129 EKLQRQGLEPVTYEQGLELAKEIGA-----VKYLECSALTQKGVKEVFDEAI 175 (198)
T ss_pred HHHHhccCCcccHHHHHHHHHHhCc-----ceeeeehhhhhCCcHHHHHHHH
Confidence 0000 112333333322 2457899999999888876543
No 113
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.59 E-value=1.9e-14 Score=151.26 Aligned_cols=154 Identities=18% Similarity=0.321 Sum_probs=109.1
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEE----EEEecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKI----KTLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i----~~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|.+++|||||+++|... +.....| |.|.+. ..+.+..+.+.+||++||+.|.
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 63 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAA-----------------TIGVDFKVKTLTVDGKKVKLAIWDTAGQERFR 63 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCC-----------------cccceEEEEEEEECCEEEEEEEEECCCchhhh
Confidence 48999999999999999999976 3222222 333222 1233556899999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
...+.++. ...++++|||+++ .+++ +.+..|+..+...... ..+|+++||||.|+... ...
T Consensus 64 ~~~~~~~~---~~d~~i~v~d~~~---------~~s~-~~~~~~~~~i~~~~~~-----~~~~~~iv~nK~D~~~~-~~~ 124 (161)
T cd01863 64 TLTSSYYR---GAQGVILVYDVTR---------RDTF-TNLETWLNELETYSTN-----NDIVKMLVGNKIDKENR-EVT 124 (161)
T ss_pred hhhHHHhC---CCCEEEEEEECCC---------HHHH-HhHHHHHHHHHHhCCC-----CCCcEEEEEECCccccc-ccC
Confidence 99999998 8899999999874 3444 4566799988775322 23579999999999732 222
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.++. .++.... + -.++.+|++++.|++++++.+.+
T Consensus 125 ~~~~----~~~~~~~-~-----~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 125 REEG----LKFARKH-N-----MLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred HHHH----HHHHHHc-C-----CEEEEEecCCCCCHHHHHHHHHH
Confidence 2222 1222221 1 24789999999999999887754
No 114
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.58 E-value=9.9e-15 Score=154.46 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=105.1
Q ss_pred EEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccccc
Q 000665 494 VFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLM 572 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~F 572 (1363)
++++|++|||||||++++.++ +...+. .|.|.+...+..+.+++.+||++||+.|...++.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~-----------------pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~ 64 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVV-----------------PTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRY 64 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccccc-----------------ccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHH
Confidence 789999999999999999976 332222 35565555666778999999999999999999999
Q ss_pred cccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHH
Q 000665 573 FPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVS 652 (1363)
Q Consensus 573 lt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~ 652 (1363)
+. ...++++|||.++ ...+ .....|+..+....+ ..|+++||||.|+...... +.+..
T Consensus 65 ~~---~ad~ii~V~D~t~---------~~s~-~~~~~~l~~~~~~~~-------~~piilv~NK~Dl~~~~~~--~~i~~ 122 (164)
T cd04162 65 LS---GSQGLIFVVDSAD---------SERL-PLARQELHQLLQHPP-------DLPLVVLANKQDLPAARSV--QEIHK 122 (164)
T ss_pred Hh---hCCEEEEEEECCC---------HHHH-HHHHHHHHHHHhCCC-------CCcEEEEEeCcCCcCCCCH--HHHHH
Confidence 99 8899999999874 2333 445678777754322 3479999999998643321 11111
Q ss_pred HHHHHHHHhccccCCCCcEEEEcCCC------CCChhHHHHHHH
Q 000665 653 SIQRLKDKFQGFVDFYPTVFTIDARS------SASVTKLTHHIR 690 (1363)
Q Consensus 653 ~~~~lr~~f~~~~~i~~~v~~vs~~~------~~~i~~L~~~L~ 690 (1363)
.. .+ ..+... ..-.+|.+||++ +.||+++|+.+.
T Consensus 123 ~~-~~-~~~~~~--~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 123 EL-EL-EPIARG--RRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred Hh-CC-hhhcCC--CceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 10 00 112111 112357788877 778888887653
No 115
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.58 E-value=3.6e-14 Score=147.68 Aligned_cols=153 Identities=19% Similarity=0.328 Sum_probs=110.3
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEE----ecCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL----KDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~----~~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|.+++|||||++++.+. +.... .+|.|.+.... ......+.+||++|++.|.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 63 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY-----------------KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR 63 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc-----------------CCceeeeeEEEEEEECCEEEEEEEEecCChHHHH
Confidence 48999999999999999999876 32211 23445444332 2356889999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
..+..++. ...++++|||+++ ++.+ +.+..|+..+...... .+|+++|+||+|........
T Consensus 64 ~~~~~~~~---~~d~ii~v~d~~~---------~~~~-~~~~~~~~~~~~~~~~------~~p~ivv~nK~D~~~~~~~~ 124 (159)
T cd00154 64 SITPSYYR---GAHGAILVYDITN---------RESF-ENLDKWLKELKEYAPE------NIPIILVGNKIDLEDQRQVS 124 (159)
T ss_pred HHHHHHhc---CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhCCC------CCcEEEEEEccccccccccc
Confidence 99999999 8999999999874 2333 6677899988875421 34799999999996322222
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
.++. +.+.... ..+++.+|++++.|++++++.|.
T Consensus 125 ~~~~----~~~~~~~------~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 125 TEEA----QQFAKEN------GLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHH----HHHHHHc------CCeEEEEecCCCCCHHHHHHHHh
Confidence 2222 2222221 13579999999999999998764
No 116
>PLN00023 GTP-binding protein; Provisional
Probab=99.57 E-value=2.1e-14 Score=163.31 Aligned_cols=127 Identities=17% Similarity=0.266 Sum_probs=93.3
Q ss_pred CCceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe-------------cCceEE
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-------------DEDTRI 554 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-------------~~~~~l 554 (1363)
...+||+++|+.|||||||++++..+ |...+.||++. +..++...+. +..+.+
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~-------------d~~ik~I~~~~~~~~~~~ik~d~~k~v~L 85 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGC-------------TVGVKHITYGSPGSSSNSIKGDSERDFFV 85 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceee-------------eEEEEEEEECCcccccccccccCCceEEE
Confidence 34589999999999999999999987 55444454442 2222222222 246889
Q ss_pred EEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhh-----h-ccCCC
Q 000665 555 SIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAV-----Q-QCMLP 628 (1363)
Q Consensus 555 ~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av-----~-~~~~p 628 (1363)
.|||+|||+.|..+++.|++ ...++|+|||+++ .+.+ +.+..|++.|......+. + .....
T Consensus 86 qIWDTAGqErfrsL~~~yyr---~AdgiILVyDITd---------r~SF-enL~kWl~eI~~~~~~s~p~~s~~~~~~~i 152 (334)
T PLN00023 86 ELWDVSGHERYKDCRSLFYS---QINGVIFVHDLSQ---------RRTK-TSLQKWASEVAATGTFSAPLGSGGPGGLPV 152 (334)
T ss_pred EEEECCCChhhhhhhHHhcc---CCCEEEEEEeCCC---------HHHH-HHHHHHHHHHHHhcccccccccccccCCCC
Confidence 99999999999999999999 8999999999985 2333 678999999987532110 0 01246
Q ss_pred eEEEEEeccCCCC
Q 000665 629 NVTVVLTHYDKIN 641 (1363)
Q Consensus 629 ~VilVgTh~D~~~ 641 (1363)
||+|||||+|+..
T Consensus 153 pIILVGNK~DL~~ 165 (334)
T PLN00023 153 PYIVIGNKADIAP 165 (334)
T ss_pred cEEEEEECccccc
Confidence 8999999999964
No 117
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.57 E-value=3.2e-14 Score=149.58 Aligned_cols=158 Identities=13% Similarity=0.222 Sum_probs=107.6
Q ss_pred eEEecCccccchHHHHHHHhhc-C-CCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-F-SSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~-~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+++++|.++||||||++++... + ...+ ..|.|..+..+..+.+++.+||++|++.|...+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~-----------------~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQII-----------------VPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCccee-----------------cCccccceEEEEECCEEEEEEECCCCHhhHHHHH
Confidence 4789999999999999999975 1 1111 2356666666666789999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.|+. ...++++|+|+++ ...+ .....|+..+..... . .....|+++|+||.|+.... ..++.
T Consensus 64 ~~~~---~~d~ii~v~D~~~---------~~~~-~~~~~~~~~~~~~~~--~-~~~~~p~iiv~NK~Dl~~~~--~~~~~ 125 (162)
T cd04157 64 HYYK---NIQGIIFVIDSSD---------RLRL-VVVKDELELLLNHPD--I-KHRRVPILFFANKMDLPDAL--TAVKI 125 (162)
T ss_pred HHHc---cCCEEEEEEeCCc---------HHHH-HHHHHHHHHHHcCcc--c-ccCCCCEEEEEeCccccCCC--CHHHH
Confidence 9998 8899999999974 2222 344677777654210 0 01234799999999986432 11111
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
.+.+. +.......-.+|.+||+++.|++++++.|.
T Consensus 126 ---~~~l~--~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 126 ---TQLLG--LENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ---HHHhC--CccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 11111 111000111478899999999999998875
No 118
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.57 E-value=2.7e-14 Score=149.45 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=108.9
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDL 571 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~ 571 (1363)
|++++|.+|+|||||++++.+. +...+.|+.+ ..-.......+..+.+.+||++|++.|...+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE--------------DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh--------------HeEEEEEEECCEEEEEEEEECCChHHHHHHHHH
Confidence 6899999999999999999876 3333222211 111111222234688999999999999999999
Q ss_pred ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHH
Q 000665 572 MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTV 651 (1363)
Q Consensus 572 Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~ 651 (1363)
++. ...++++|||+++ .+.+ ..+..|...+....+. ..+|+++|+||.|.........+.+
T Consensus 67 ~~~---~~~~~i~v~d~~~---------~~s~-~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~- 127 (160)
T cd00876 67 YIR---QGDGFILVYSITD---------RESF-EEIKGYREQILRVKDD-----EDIPIVLVGNKCDLENERQVSKEEG- 127 (160)
T ss_pred HHh---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcCC-----CCCcEEEEEECCcccccceecHHHH-
Confidence 999 8999999999874 3343 5667777777664331 2458999999999975332222222
Q ss_pred HHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 652 SSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 652 ~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..+...+. .+++.+||+++.|++++++.|.+
T Consensus 128 ---~~~~~~~~------~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 128 ---KALAKEWG------CPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred ---HHHHHHcC------CcEEEeccCCCCCHHHHHHHHHh
Confidence 22222221 25689999999999999998865
No 119
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.57 E-value=4.6e-14 Score=152.22 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=107.7
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe-----cCceEEEEEecCCchh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-----DEDTRISIWNLAGQHE 564 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-----~~~~~l~iWDfaGQe~ 564 (1363)
.+|++++|.+|+|||||++++..+ +.. ..| |.|+....+. +..+.+.+||++||+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~-----------------t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 64 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVP-----------------TKGFNTEKIKVSLGNSKGITFHFWDVGGQEK 64 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCC-----------------ccccceeEEEeeccCCCceEEEEEECCCcHh
Confidence 479999999999999999999865 321 122 4444433322 3568999999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|..++..|+. ...++++|+|+++ .+.+ ..+..|+..+...... ...|++||+||+|+.....
T Consensus 65 ~~~~~~~~~~---~~d~ii~v~D~~~---------~~~~-~~~~~~~~~i~~~~~~-----~~~p~iiv~NK~D~~~~~~ 126 (183)
T cd04152 65 LRPLWKSYTR---CTDGIVFVVDSVD---------VERM-EEAKTELHKITRFSEN-----QGVPVLVLANKQDLPNALS 126 (183)
T ss_pred HHHHHHHHhc---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHhhhhc-----CCCcEEEEEECcCccccCC
Confidence 9999999998 8899999999874 3333 4456788777653211 1247999999999853221
Q ss_pred hhhHHHHHHHHHHHHHhccccCC-CCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDF-YPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i-~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
. .+. +.+.. +...... ...++++||+++.|++++++.|.+.
T Consensus 127 ~--~~~----~~~~~-~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~ 168 (183)
T cd04152 127 V--SEV----EKLLA-LHELSASTPWHVQPACAIIGEGLQEGLEKLYEM 168 (183)
T ss_pred H--HHH----HHHhC-ccccCCCCceEEEEeecccCCCHHHHHHHHHHH
Confidence 1 111 11110 1111000 1246889999999999999988753
No 120
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.57 E-value=3.7e-14 Score=149.09 Aligned_cols=151 Identities=12% Similarity=0.085 Sum_probs=100.7
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcce--EEEEEecCceEEEEEecCCchhhhhc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGM--KIKTLKDEDTRISIWNLAGQHEFYSL 568 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi--~i~~~~~~~~~l~iWDfaGQe~y~~t 568 (1363)
+|+.++|++|||||||++++..+ |...+.| |.|. ....+.+..+.+.+||++||+.+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-----------------~~~~~~~~i~~~~~~~~l~i~D~~g~~~~--- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESP-----------------EGGRFKKEVLVDGQSHLLLIRDEGGAPDA--- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCC-----------------CccceEEEEEECCEEEEEEEEECCCCCch---
Confidence 48999999999999999998765 4322111 1121 12233456788999999999853
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC--Cchh
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ--PSQD 646 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~--~~~~ 646 (1363)
.|+. .+.++++|||+++ .+.+ +.+..|++.+..... ...+|+++||||.|+... +...
T Consensus 61 --~~~~---~~~~~ilv~d~~~---------~~sf-~~~~~~~~~i~~~~~-----~~~~piilvgnK~Dl~~~~~~~v~ 120 (158)
T cd04103 61 --QFAS---WVDAVIFVFSLEN---------EASF-QTVYNLYHQLSSYRN-----ISEIPLILVGTQDAISESNPRVID 120 (158)
T ss_pred --hHHh---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcC-----CCCCCEEEEeeHHHhhhcCCcccC
Confidence 3456 6789999999985 3444 455779999876431 123579999999997422 1122
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.++ .+.+.++... -.++++||+++.||+++|+.+.+
T Consensus 121 ~~~----~~~~~~~~~~-----~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 121 DAR----ARQLCADMKR-----CSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred HHH----HHHHHHHhCC-----CcEEEEecCCCCCHHHHHHHHHh
Confidence 221 1233333221 14689999999999999988764
No 121
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.57 E-value=9.1e-17 Score=179.59 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=69.7
Q ss_pred ccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCH--------HH----------HHHHHH
Q 000665 346 SSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRP--------DD----------FVRIFK 407 (1363)
Q Consensus 346 ~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~--------~g----------l~~L~~ 407 (1363)
.++.+++.++|..|+|+ +|.+.+ ++..+....+|+.|||+.|. +.. .+ +..+..
T Consensus 427 v~~~l~~l~kLt~L~L~--NN~Ln~-----LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLS--NNLLND-----LPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred chHHHHhhhcceeeecc--cchhhh-----cchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccCh
Confidence 45556677889999997 555544 33344455568899999883 322 11 111221
Q ss_pred -HHhhCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCCCC
Q 000665 408 -SLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNSG 459 (1363)
Q Consensus 408 -~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~~g 459 (1363)
.+....+|.+|||.+|. ++.+++.++.+.+|++|+|.||||+.+.
T Consensus 499 ~~l~nm~nL~tLDL~nNd-------lq~IPp~LgnmtnL~hLeL~gNpfr~Pr 544 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNND-------LQQIPPILGNMTNLRHLELDGNPFRQPR 544 (565)
T ss_pred HHhhhhhhcceeccCCCc-------hhhCChhhccccceeEEEecCCccCCCH
Confidence 25567789999998886 5678999999999999999999999764
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.57 E-value=4.4e-14 Score=148.14 Aligned_cols=157 Identities=13% Similarity=0.209 Sum_probs=111.6
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLM 572 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~F 572 (1363)
|+.++|.+|+|||||++++.+.... ....|.|+.+..+......+.+||++|++.|....+.|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-----------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHH
Confidence 6899999999999999999976211 12336777777777678899999999999999999999
Q ss_pred cccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHH
Q 000665 573 FPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVS 652 (1363)
Q Consensus 573 lt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~ 652 (1363)
++ ...++++|||+++ .+.+ .....|+..+..... ....|+++|+||+|+.... ..+ +
T Consensus 64 ~~---~~~~~i~v~D~~~---------~~~~-~~~~~~~~~~~~~~~-----~~~~piiiv~nK~D~~~~~--~~~---~ 120 (158)
T cd00878 64 YE---NTNGIIFVVDSSD---------RERI-EEAKEELHKLLNEEE-----LKGVPLLIFANKQDLPGAL--SVS---E 120 (158)
T ss_pred hc---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHhCcc-----cCCCcEEEEeeccCCcccc--CHH---H
Confidence 99 8899999999984 2333 344666666655322 1234799999999996432 111 1
Q ss_pred HHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 653 SIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 653 ~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..+.+..... .....+++.+|++++.|++++++.|..
T Consensus 121 ~~~~~~~~~~--~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 121 LIEKLGLEKI--LGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHhhChhhc--cCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 2222222110 111236889999999999999988753
No 123
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.55 E-value=6.8e-14 Score=147.21 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=107.1
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
.|++++|.+|+|||||++++... +...+.+++.. .. ......+++.+.+.+||++||+.|..+..
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-------------SY-RKKVVLDGEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-------------hE-EEEEEECCEEEEEEEEECCChhhhhHHHH
Confidence 38999999999999999999976 43333222211 00 11223345678999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.+++ ....+++|||+++ +..+ ..+..|+..+..... ....|+++|+||+|+........+..
T Consensus 67 ~~~~---~~~~~i~v~d~~~---------~~s~-~~~~~~~~~~~~~~~-----~~~~piiiv~NK~D~~~~~~~~~~~~ 128 (164)
T cd04139 67 NYHR---SGEGFLLVFSITD---------MESF-TATAEFREQILRVKD-----DDNVPLLLVGNKCDLEDKRQVSSEEA 128 (164)
T ss_pred HHhh---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcC-----CCCCCEEEEEEccccccccccCHHHH
Confidence 9999 7888999999873 3333 344556665554211 11347999999999965222222211
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
..+...+. -+++.+|++++.|++++++.|.+.
T Consensus 129 ----~~~~~~~~------~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (164)
T cd04139 129 ----ANLARQWG------VPYVETSAKTRQNVEKAFYDLVRE 160 (164)
T ss_pred ----HHHHHHhC------CeEEEeeCCCCCCHHHHHHHHHHH
Confidence 12222221 256899999999999999888653
No 124
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3.8e-14 Score=136.27 Aligned_cols=152 Identities=16% Similarity=0.254 Sum_probs=110.8
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|.+++|+-|+|||+|++.+... |-..---|++. .+|-.|.++.+..+++.|||+|||+.|++..+
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigv-------------efgtriievsgqkiklqiwdtagqerfravtr 78 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGV-------------EFGTRIIEVSGQKIKLQIWDTAGQERFRAVTR 78 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccce-------------ecceeEEEecCcEEEEEEeecccHHHHHHHHH
Confidence 69999999999999999999865 32111111111 24445566678899999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhc-hhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNS-RRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~-~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
.|++ .++..+.|||+++ ......+..||...++.. |+. .++++|||+|+-..+.+..++
T Consensus 79 syyr---gaagalmvyditr----------rstynhlsswl~dar~ltnpnt-------~i~lignkadle~qrdv~yee 138 (215)
T KOG0097|consen 79 SYYR---GAAGALMVYDITR----------RSTYNHLSSWLTDARNLTNPNT-------VIFLIGNKADLESQRDVTYEE 138 (215)
T ss_pred HHhc---cccceeEEEEehh----------hhhhhhHHHHHhhhhccCCCce-------EEEEecchhhhhhcccCcHHH
Confidence 9999 8899999999986 233477899999888743 333 489999999997665555554
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLT 686 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~ 686 (1363)
+++..+ +- + -.+...|+++|.++++.|
T Consensus 139 ak~fae----en-g-----l~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 139 AKEFAE----EN-G-----LMFLEASAKTGQNVEDAF 165 (215)
T ss_pred HHHHHh----hc-C-----eEEEEecccccCcHHHHH
Confidence 433222 21 1 124677999999997765
No 125
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.54 E-value=5.1e-14 Score=149.51 Aligned_cols=158 Identities=17% Similarity=0.220 Sum_probs=108.5
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLM 572 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~F 572 (1363)
+++++|.+|||||||++++.+.+...+ ..|.|........+++++.+||++||+.|...++.|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~-----------------~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKV-----------------APTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccc-----------------cCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 478999999999999999987643322 236666666666678999999999999999999999
Q ss_pred cccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHH
Q 000665 573 FPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVS 652 (1363)
Q Consensus 573 lt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~ 652 (1363)
+. ...++++|||+++ .+.+ +.+..|+..+..... ...+|++||+||.|+..... ..+
T Consensus 64 ~~---~a~~ii~V~D~s~---------~~s~-~~~~~~l~~l~~~~~-----~~~~piliv~NK~Dl~~~~~--~~~--- 120 (167)
T cd04161 64 YA---EAHGLVFVVDSSD---------DDRV-QEVKEILRELLQHPR-----VSGKPILVLANKQDKKNALL--GAD--- 120 (167)
T ss_pred Hc---CCCEEEEEEECCc---------hhHH-HHHHHHHHHHHcCcc-----ccCCcEEEEEeCCCCcCCCC--HHH---
Confidence 98 8899999999984 2233 556789988875321 12357999999999964331 111
Q ss_pred HHHHHH-HHhccccCCCCcEEEEcCCCC------CChhHHHHHHH
Q 000665 653 SIQRLK-DKFQGFVDFYPTVFTIDARSS------ASVTKLTHHIR 690 (1363)
Q Consensus 653 ~~~~lr-~~f~~~~~i~~~v~~vs~~~~------~~i~~L~~~L~ 690 (1363)
..+.+. +.+.......-.++.+||++| .|+++-++.|.
T Consensus 121 i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 121 VIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred HHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 111111 011100011114567899998 78888887764
No 126
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.53 E-value=4.7e-14 Score=149.21 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=104.3
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhh-hhccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEF-YSLHD 570 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y-~~th~ 570 (1363)
|++++|++|+|||||++++... +...+.|+.+ +.......+.++.+++.+||++|++.+ .....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~--------------~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE--------------SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH--------------HhceEEEEECCEEEEEEEEECCCCcccccchHH
Confidence 6899999999999999999865 4333333221 111112234456789999999999953 33334
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. ...++++|||+++ ...+ +.+..|+..+....+ .....|+++||||+|+........++
T Consensus 67 ~~~~---~~d~~i~v~d~~~---------~~s~-~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~v~~~~- 128 (165)
T cd04146 67 RSIR---WADGFVLVYSITD---------RSSF-DEISQLKQLIREIKK----RDREIPVILVGNKADLLHYRQVSTEE- 128 (165)
T ss_pred HHHH---hCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHHhc----CCCCCCEEEEEECCchHHhCccCHHH-
Confidence 4566 6788999999974 3333 566888888876322 02234799999999985433222221
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCC-CChhHHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSS-ASVTKLTHHIRKT 692 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~-~~i~~L~~~L~~~ 692 (1363)
.+.+.+.+. ..++++|++++ .|++++++.|.+.
T Consensus 129 ---~~~~~~~~~------~~~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 129 ---GEKLASELG------CLFFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred ---HHHHHHHcC------CEEEEeCCCCCchhHHHHHHHHHHH
Confidence 122233332 24689999999 5999999988753
No 127
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.53 E-value=2.7e-14 Score=142.39 Aligned_cols=117 Identities=23% Similarity=0.465 Sum_probs=85.4
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLM 572 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~F 572 (1363)
|++++|.+|+|||||+++|.+....... .+.+-...+.++....+......+.+||++|++.|+..|+.+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNS----------VPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFF 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccc----------cccccCCCcEEEEEEEecCCceEEEEEecCccceecccccch
Confidence 7899999999999999999987221000 001112234555555555566669999999999999999999
Q ss_pred cccCCCCeEEEEEEeCCCCCCCCCCCChhhHH--HHHHHHHHHHHhhchhhhhccCCCeEEEEEeccC
Q 000665 573 FPGHGSASCFLIISSLFRKPTNREPKTPEEIE--EDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYD 638 (1363)
Q Consensus 573 lt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~--~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D 638 (1363)
+. ..+++++|||+++ +++++ .++.+||..+..+.++ .||++||||.|
T Consensus 71 ~~---~~d~~ilv~D~s~---------~~s~~~~~~~~~~l~~~~~~~~~-------~piilv~nK~D 119 (119)
T PF08477_consen 71 LK---KADAVILVYDLSD---------PESLEYLSQLLKWLKNIRKRDKN-------IPIILVGNKSD 119 (119)
T ss_dssp HH---HSCEEEEEEECCG---------HHHHHHHHHHHHHHHHHHHHSSC-------SEEEEEEE-TC
T ss_pred hh---cCcEEEEEEcCCC---------hHHHHHHHHHHHHHHHHHccCCC-------CCEEEEEeccC
Confidence 88 8999999999984 34343 4567799999875433 48999999998
No 128
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.53 E-value=9.7e-14 Score=146.89 Aligned_cols=164 Identities=18% Similarity=0.247 Sum_probs=109.6
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLM 572 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~F 572 (1363)
+++++|.+|+|||||+++|.+.+... + + .+.....+|.|+++..+..+...+.+||++||+.|......+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~--~--~------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY--K--G------LPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc--c--C------CcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHH
Confidence 57899999999999999998653210 0 0 001122457777777776678999999999999999988888
Q ss_pred cccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHH
Q 000665 573 FPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVS 652 (1363)
Q Consensus 573 lt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~ 652 (1363)
+. ...++++|+|+++ .+.. .....|+..+..... ....|+++|+||+|+... ....+..
T Consensus 71 ~~---~~~~~v~vvd~~~---------~~~~-~~~~~~~~~~~~~~~-----~~~~p~ilv~NK~D~~~~--~~~~~~~- 129 (167)
T cd04160 71 YA---ECHAIIYVIDSTD---------RERF-EESKSALEKVLRNEA-----LEGVPLLILANKQDLPDA--LSVEEIK- 129 (167)
T ss_pred hC---CCCEEEEEEECch---------HHHH-HHHHHHHHHHHhChh-----hcCCCEEEEEEccccccC--CCHHHHH-
Confidence 88 7889999999874 2233 445667766654211 113479999999998542 2212111
Q ss_pred HHHHHHHHhccccCC-CCcEEEEcCCCCCChhHHHHHHH
Q 000665 653 SIQRLKDKFQGFVDF-YPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 653 ~~~~lr~~f~~~~~i-~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
+.+. .+...... ..+++.+||+++.|++++++.|.
T Consensus 130 --~~~~-~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 130 --EVFQ-DKAEEIGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred --HHhc-cccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 1111 11111111 12689999999999999988775
No 129
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.53 E-value=1.1e-13 Score=147.86 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=107.7
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
..|++++|.+++|||||++++..+ +.. . ..|.|..+..+..+.+++.+||++||+.|...+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~-----------------~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-T-----------------SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-c-----------------CCccccceEEEEECCeEEEEEECCCCHHHHHHH
Confidence 469999999999999999999865 221 1 125555555666668999999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
+.++. ...++++|+|+++ .+.+ .....|+..+..... ...+|+++|+||.|+.... +.++
T Consensus 77 ~~~~~---~~d~vi~V~D~s~---------~~~~-~~~~~~l~~~~~~~~-----~~~~p~viv~NK~Dl~~~~--~~~~ 136 (174)
T cd04153 77 NTYYT---NTDAVILVIDSTD---------RERL-PLTKEELYKMLAHED-----LRKAVLLVLANKQDLKGAM--TPAE 136 (174)
T ss_pred HHHhh---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHhchh-----hcCCCEEEEEECCCCCCCC--CHHH
Confidence 99888 7899999999874 2233 333455555543211 1235799999999985421 2121
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..+.+...... ...-.++.+||+++.|++++++.|.+
T Consensus 137 ---i~~~l~~~~~~--~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 137 ---ISESLGLTSIR--DHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ---HHHHhCccccc--CCceEEEecccCCCCCHHHHHHHHhc
Confidence 11222111000 11125789999999999999998853
No 130
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=1.1e-15 Score=186.65 Aligned_cols=227 Identities=16% Similarity=0.132 Sum_probs=149.9
Q ss_pred CCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCCccc
Q 000665 186 STLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVK 265 (1363)
Q Consensus 186 ~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~L~ 265 (1363)
.+|+.++++.|+++. ++..+..+.+|+.|+.+.|.. ..+...+....+|+.+.+..+.+..++..+...+.|+
T Consensus 241 ~nl~~~dis~n~l~~----lp~wi~~~~nle~l~~n~N~l---~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~ 313 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSN----LPEWIGACANLEALNANHNRL---VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLR 313 (1081)
T ss_pred ccceeeecchhhhhc----chHHHHhcccceEecccchhH---HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceee
Confidence 345555555554322 456667777777777777732 3444445566677777777777777777777778899
Q ss_pred EEEccCCCCChHHHHHHHHHHh---------------------hCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEE
Q 000665 266 SLDMTGVRLKSRWAKEFRWVLQ---------------------QNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLY 324 (1363)
Q Consensus 266 ~LdLs~N~L~~~~~~~L~~~L~---------------------~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~Ld 324 (1363)
+|||..|+|.+.....+.-... .++.|+.|+|.+|.++|..+. .|...++|+.|+
T Consensus 314 tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p----~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 314 TLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP----VLVNFKHLKVLH 389 (1081)
T ss_pred eeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh----hhccccceeeee
Confidence 9999999886643322221111 123477788888888876554 356678888888
Q ss_pred ccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHH
Q 000665 325 LHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVR 404 (1363)
Q Consensus 325 Ls~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~ 404 (1363)
|++|+|+......+ .+...|+.|+||| |+++. |+..+..+..|+.|...+|+ +..
T Consensus 390 LsyNrL~~fpas~~------------~kle~LeeL~LSG--NkL~~-----Lp~tva~~~~L~tL~ahsN~------l~~ 444 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKL------------RKLEELEELNLSG--NKLTT-----LPDTVANLGRLHTLRAHSNQ------LLS 444 (1081)
T ss_pred ecccccccCCHHHH------------hchHHhHHHhccc--chhhh-----hhHHHHhhhhhHHHhhcCCc------eee
Confidence 88888887776665 3456788888884 67665 44455566778888887875 334
Q ss_pred HHHHHhhCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCCCC
Q 000665 405 IFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPL 455 (1363)
Q Consensus 405 L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l 455 (1363)
++ .+..++.|+.+||+.|+. .. ..+..++.. ++|++|||+||.-
T Consensus 445 fP-e~~~l~qL~~lDlS~N~L--~~---~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 445 FP-ELAQLPQLKVLDLSCNNL--SE---VTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ch-hhhhcCcceEEecccchh--hh---hhhhhhCCC-cccceeeccCCcc
Confidence 55 666788888888888872 22 123333333 7888888888874
No 131
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.52 E-value=1.8e-13 Score=149.58 Aligned_cols=159 Identities=15% Similarity=0.228 Sum_probs=108.0
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDL 571 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~ 571 (1363)
|++++|.+|||||||++++..+ +...+.+++. ........+.+..+.+.+||++|+..|..+++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~--------------~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE--------------EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh--------------hheeEEEEECCEEEEEEEEECCCchhhhHHHHH
Confidence 6899999999999999999876 3322222211 111112223345689999999999999999998
Q ss_pred ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC-CchhhHHH
Q 000665 572 MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ-PSQDMQLT 650 (1363)
Q Consensus 572 Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~-~~~~~~~~ 650 (1363)
++. ...++++|||+++ ..++ +.+..|+..+...... ...|+++|+||+|+... .....+.
T Consensus 67 ~~~---~ad~vilv~d~~~---------~~s~-~~~~~~~~~i~~~~~~-----~~~piilv~NK~Dl~~~~~~v~~~~- 127 (198)
T cd04147 67 SIQ---NSDAFALVYAVDD---------PESF-EEVERLREEILEVKED-----KFVPIVVVGNKADSLEEERQVPAKD- 127 (198)
T ss_pred Hhh---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcCC-----CCCcEEEEEEccccccccccccHHH-
Confidence 888 8899999999974 2333 5568888887763321 12479999999998643 2111111
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
..+.....+ ...++.+||+++.|++++++.|.+.
T Consensus 128 --~~~~~~~~~------~~~~~~~Sa~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 128 --ALSTVELDW------NCGFVETSAKDNENVLEVFKELLRQ 161 (198)
T ss_pred --HHHHHHhhc------CCcEEEecCCCCCCHHHHHHHHHHH
Confidence 111111111 1246889999999999999988763
No 132
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.52 E-value=1.1e-13 Score=145.34 Aligned_cols=156 Identities=15% Similarity=0.238 Sum_probs=104.2
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCchhhhhcccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQHEFYSLHDL 571 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQe~y~~th~~ 571 (1363)
|++++|.+|+|||||++++.+...... ..|.|+++.... ++.+.+.+||++||+.|...+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----------------IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-----------------cCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHH
Confidence 588999999999999999997621111 124555444443 35689999999999999999988
Q ss_pred ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHH
Q 000665 572 MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTV 651 (1363)
Q Consensus 572 Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~ 651 (1363)
++. ...++++|+|+++ ...+ ..+..|+..+..... ....|+++|+||+|+.... ..++
T Consensus 64 ~~~---~~~~iv~v~D~~~---------~~~~-~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~--~~~~-- 121 (160)
T cd04156 64 YLE---NTDGLVYVVDSSD---------EARL-DESQKELKHILKNEH-----IKGVPVVLLANKQDLPGAL--TAEE-- 121 (160)
T ss_pred Hhc---cCCEEEEEEECCc---------HHHH-HHHHHHHHHHHhchh-----hcCCCEEEEEECcccccCc--CHHH--
Confidence 888 7899999999874 2233 344566666543211 1235799999999985321 1111
Q ss_pred HHHHHHH-HHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 652 SSIQRLK-DKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 652 ~~~~~lr-~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
....++ ..+... ....++.+||+++.|++++++.|.
T Consensus 122 -i~~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 122 -ITRRFKLKKYCSD--RDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred -HHHHcCCcccCCC--CcEEEEecccccCCChHHHHHHHh
Confidence 111111 111111 011478899999999999998875
No 133
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.52 E-value=3.2e-13 Score=144.81 Aligned_cols=244 Identities=16% Similarity=0.169 Sum_probs=151.8
Q ss_pred CCCccEEEEecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCC---H---HHHHHHHHHhHcCCCccEEEeecCCCCHHH
Q 000665 73 HTSLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFD---A---ECLAEISDVVRRNGVIKEVMFTESGIKNAG 146 (1363)
Q Consensus 73 ~~~L~~L~Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~---~---~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g 146 (1363)
...++.++||+|.++.+..+.++..+.+-.+|+..++|+-..+ + ..+.-+..++..|++|+.++||.|.++...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 3566777788888888887778877777777777777654322 1 134445566667777888888877777777
Q ss_pred HHHHHHHhccCCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCc
Q 000665 147 ASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGE 226 (1363)
Q Consensus 147 ~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~ 226 (1363)
...+...+++...|.+|.|++|.+++.+...+++++.... .|. -...-+.|++.+...|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la--------~nK----------Kaa~kp~Le~vicgrN--- 167 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA--------YNK----------KAADKPKLEVVICGRN--- 167 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH--------HHh----------hhccCCCceEEEeccc---
Confidence 7777777777777777777777777777777776654411 111 0111233444444443
Q ss_pred chhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHH-HHhhCCCccEEEccCCCCChH
Q 000665 227 KSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRW-VLQQNQSLKEVILSKTCLKDK 305 (1363)
Q Consensus 227 ~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~-~L~~n~~L~~LdLs~N~L~d~ 305 (1363)
++.+-.....+..+....+|+.+.+..|.|.+.|+..++- .+..+++|+.|||.+|-++..
T Consensus 168 ------------------Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 168 ------------------RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred ------------------hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 2333333344444554456777777777777776665543 244566777777777777777
Q ss_pred HHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEe
Q 000665 306 GVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTF 361 (1363)
Q Consensus 306 g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~L 361 (1363)
|..+++.++...+.|+.|.+..|-++..|+..+..... . ..+++|..|-+
T Consensus 230 gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~---e---~~~p~l~~L~~ 279 (388)
T COG5238 230 GSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN---E---KFVPNLMPLPG 279 (388)
T ss_pred hHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh---h---hcCCCcccccc
Confidence 77777777766666777777777777777666654331 1 23455555544
No 134
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.51 E-value=1.9e-13 Score=151.92 Aligned_cols=160 Identities=13% Similarity=0.112 Sum_probs=103.7
Q ss_pred eeEEecCccccchHHHHHHHhhc-CC-CCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FS-SSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~-~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
+|++++|++|||||||++++..+ +. ..+.|+.+ .+.......+.++..++.+||++||+.+ ..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~-------------~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~ 65 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD-------------DDTYERTVSVDGEESTLVVIDHWEQEMW--TE 65 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc-------------ccceEEEEEECCEEEEEEEEeCCCcchH--HH
Confidence 48999999999999999999755 43 22222111 0122223334456789999999999833 22
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
..++.. ...++++|||+++ ...+ +.+..|+..+..... ....|+|+||||.|+........++
T Consensus 66 ~~~~~~--~ad~iilV~d~td---------~~S~-~~~~~~~~~l~~~~~-----~~~~piilV~NK~Dl~~~~~v~~~~ 128 (221)
T cd04148 66 DSCMQY--QGDAFVVVYSVTD---------RSSF-ERASELRIQLRRNRQ-----LEDRPIILVGNKSDLARSREVSVQE 128 (221)
T ss_pred hHHhhc--CCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcC-----CCCCCEEEEEEChhccccceecHHH
Confidence 333321 3688999999985 3344 456789888866321 1234799999999986543322221
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
. +.+...+. ..++++||+++.|++++++.|...+
T Consensus 129 ~----~~~a~~~~------~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 129 G----RACAVVFD------CKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred H----HHHHHHcC------CeEEEecCCCCCCHHHHHHHHHHHH
Confidence 1 22333322 2468999999999999999887643
No 135
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.50 E-value=1.3e-13 Score=143.71 Aligned_cols=156 Identities=18% Similarity=0.307 Sum_probs=106.5
Q ss_pred EEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccccc
Q 000665 494 VFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLM 572 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~F 572 (1363)
+.++|.+|||||||+++|.+. +...+ .+|.|+++.....+.+.+.+||++|++.|....+.|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 64 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDT-----------------IPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERY 64 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCc-----------------cCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHH
Confidence 689999999999999999976 33222 236666666665566899999999999999999889
Q ss_pred cccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHH
Q 000665 573 FPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVS 652 (1363)
Q Consensus 573 lt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~ 652 (1363)
+. ...++++|+|+++ ...+ .....|+..+..... ....|+++|+||.|+..... .+ .
T Consensus 65 ~~---~~d~ii~v~d~~~---------~~~~-~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~--~~---~ 121 (159)
T cd04159 65 CR---GVNAIVYVVDAAD---------RTAL-EAAKNELHDLLEKPS-----LEGIPLLVLGNKNDLPGALS--VD---E 121 (159)
T ss_pred Hh---cCCEEEEEEECCC---------HHHH-HHHHHHHHHHHcChh-----hcCCCEEEEEeCccccCCcC--HH---H
Confidence 98 8899999999874 2333 334556655543211 11347999999999864321 11 1
Q ss_pred HHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 653 SIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 653 ~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..+.+... .......+++.+|++++.|++++++.|.+
T Consensus 122 ~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 122 LIEQMNLK--SITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHhCcc--cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 11221111 11111135789999999999999988753
No 136
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.50 E-value=4.3e-13 Score=148.52 Aligned_cols=154 Identities=19% Similarity=0.304 Sum_probs=110.1
Q ss_pred CCceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEE----ecCceEEEEEecCCch
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL----KDEDTRISIWNLAGQH 563 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~----~~~~~~l~iWDfaGQe 563 (1363)
...+|+.++|++|+|||||++++..+ +...+. .|.|+++... +++.+.+.+||++||+
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~-----------------~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYI-----------------PTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCC-----------------CccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 34689999999999999999766544 433332 3556555443 3567999999999999
Q ss_pred hhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 564 EFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 564 ~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
.|..++..|+. ...++++|||+++ ..++ ..+..|+..+....+ ..||++||||.|+....
T Consensus 70 ~~~~~~~~~~~---~~~~~i~v~d~~~---------~~s~-~~~~~~~~~i~~~~~-------~~~i~lv~nK~Dl~~~~ 129 (215)
T PTZ00132 70 KFGGLRDGYYI---KGQCAIIMFDVTS---------RITY-KNVPNWHRDIVRVCE-------NIPIVLVGNKVDVKDRQ 129 (215)
T ss_pred hhhhhhHHHhc---cCCEEEEEEECcC---------HHHH-HHHHHHHHHHHHhCC-------CCCEEEEEECccCcccc
Confidence 99999999888 7889999999984 2333 566889998875322 34799999999985321
Q ss_pred chhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 644 SQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 644 ~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...+ ..+ +.+.. + -.++.+|++++.|+++.+..|.+
T Consensus 130 -~~~~----~~~-~~~~~-~-----~~~~e~Sa~~~~~v~~~f~~ia~ 165 (215)
T PTZ00132 130 -VKAR----QIT-FHRKK-N-----LQYYDISAKSNYNFEKPFLWLAR 165 (215)
T ss_pred -CCHH----HHH-HHHHc-C-----CEEEEEeCCCCCCHHHHHHHHHH
Confidence 1111 111 11121 1 14688999999999998887765
No 137
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.49 E-value=4.6e-13 Score=144.56 Aligned_cols=157 Identities=14% Similarity=0.172 Sum_probs=107.5
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
..|++++|.+|||||||++++.++....+.| |.+..+..+..+++++.+||++|++.+...+.
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 79 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQP-----------------TQHPTSEELAIGNIKFTTFDLGGHQQARRLWK 79 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCC-----------------ccccceEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 4699999999999999999999762211111 33333444444678999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. ...++++|+|+++ ++.+ .....|+..+..... ....|+++|+||.|+... ...+
T Consensus 80 ~~~~---~ad~ii~vvD~~~---------~~~~-~~~~~~l~~l~~~~~-----~~~~piliv~NK~Dl~~~--~~~~-- 137 (184)
T smart00178 80 DYFP---EVNGIVYLVDAYD---------KERF-AESKRELDALLSDEE-----LATVPFLILGNKIDAPYA--ASED-- 137 (184)
T ss_pred HHhC---CCCEEEEEEECCc---------HHHH-HHHHHHHHHHHcChh-----hcCCCEEEEEeCccccCC--CCHH--
Confidence 9999 8999999999974 2333 334556665543211 113479999999998532 2222
Q ss_pred HHHHHHHHHHhccc--c-------CCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGF--V-------DFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~--~-------~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
++++.++-. . .....++.+||+++.|++++++.|.+
T Consensus 138 -----~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 138 -----ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred -----HHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 222222100 0 01235899999999999999988864
No 138
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.49 E-value=3.1e-13 Score=145.07 Aligned_cols=161 Identities=18% Similarity=0.207 Sum_probs=108.4
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
.|++++|.+|+|||||++++... +...+.|++.. ..+ ......+..+.+.+||++||+.|...++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~-----------~~~---~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIEN-----------TFS---KIIRYKGQDYHLEIVDTAGQDEYSILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhh-----------hEE---EEEEECCEEEEEEEEECCChHhhHHHHH
Confidence 48999999999999999999976 33323332211 001 1222334467889999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. ....+++|||+++ ...+ +.+..|+..+...... ...|+++|+||+|....+....+.
T Consensus 68 ~~~~---~~~~~i~v~d~~~---------~~~~-~~~~~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~- 128 (180)
T cd04137 68 KYSI---GIHGYILVYSVTS---------RKSF-EVVKVIYDKILDMLGK-----ESVPIVLVGNKSDLHTQRQVSTEE- 128 (180)
T ss_pred HHHh---hCCEEEEEEECCC---------HHHH-HHHHHHHHHHHHhcCC-----CCCCEEEEEEchhhhhcCccCHHH-
Confidence 9998 8899999999874 2333 4556666655542211 123699999999986432222111
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSR 694 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~ 694 (1363)
.+.+.+.+. ..++.+||+++.|+++++..|.+.+.
T Consensus 129 ---~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 129 ---GKELAESWG------AAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred ---HHHHHHHcC------CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 223333332 35789999999999999998876443
No 139
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.48 E-value=2.3e-13 Score=147.28 Aligned_cols=161 Identities=18% Similarity=0.178 Sum_probs=119.5
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
..|++++|.+|||||+|+.++.+. |...+.||++. ..-+....+++.+.+.|+|++||++|-++.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied--------------~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~ 68 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIED--------------SYRKELTVDGEVCMLEILDTAGQEEFSAMR 68 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCccc--------------cceEEEEECCEEEEEEEEcCCCcccChHHH
Confidence 469999999999999999999988 87777777653 222233344788899999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
..++. .+..|++||++++ ..++ +.+..+...| .+.+.. ..-|+++||||+|+...+.+..++
T Consensus 69 ~~~~~---~~~gF~lVysitd---------~~SF-~~~~~l~~~I-~r~~~~----~~~PivlVGNK~Dl~~~R~V~~ee 130 (196)
T KOG0395|consen 69 DLYIR---NGDGFLLVYSITD---------RSSF-EEAKQLREQI-LRVKGR----DDVPIILVGNKCDLERERQVSEEE 130 (196)
T ss_pred HHhhc---cCcEEEEEEECCC---------HHHH-HHHHHHHHHH-HHhhCc----CCCCEEEEEEcccchhccccCHHH
Confidence 99999 8899999999985 2334 3345566666 333321 234799999999998766555554
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
..++ ...+. -..+++|++...+++++|..|...+
T Consensus 131 g~~l----a~~~~------~~f~E~Sak~~~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 131 GKAL----ARSWG------CAFIETSAKLNYNVDEVFYELVREI 164 (196)
T ss_pred HHHH----HHhcC------CcEEEeeccCCcCHHHHHHHHHHHH
Confidence 4333 22221 1368999999999999999887643
No 140
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.46 E-value=8.7e-13 Score=143.00 Aligned_cols=165 Identities=14% Similarity=0.155 Sum_probs=105.2
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
...|++++|++|+|||||++++.++....+.| |.|.....+.-+...+.+||++||+.|...+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~-----------------T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~ 80 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVP-----------------TLHPTSEELTIGNIKFKTFDLGGHEQARRLW 80 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCC-----------------ccCcceEEEEECCEEEEEEECCCCHHHHHHH
Confidence 35799999999999999999998762222222 3333333444456889999999999999888
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
..++. ....+++|+|+++ .+.+. ....|+..+..... ....||++|+||.|+.. ....++
T Consensus 81 ~~~~~---~ad~iilV~D~~~---------~~s~~-~~~~~~~~i~~~~~-----~~~~pvivv~NK~Dl~~--~~~~~~ 140 (190)
T cd00879 81 KDYFP---EVDGIVFLVDAAD---------PERFQ-ESKEELDSLLSDEE-----LANVPFLILGNKIDLPG--AVSEEE 140 (190)
T ss_pred HHHhc---cCCEEEEEEECCc---------HHHHH-HHHHHHHHHHcCcc-----ccCCCEEEEEeCCCCCC--CcCHHH
Confidence 88888 7888999999874 23332 33456655543211 11247999999999853 222222
Q ss_pred HHHHHHHHHHHh---c---cccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 650 TVSSIQRLKDKF---Q---GFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 650 ~~~~~~~lr~~f---~---~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
........+... . ......-.++.+||+++.|++++++.|.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 141 LRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred HHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 211111000000 0 00001124789999999999999998864
No 141
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.45 E-value=1.6e-12 Score=139.17 Aligned_cols=160 Identities=19% Similarity=0.318 Sum_probs=114.6
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhc
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSL 568 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~t 568 (1363)
....|++++|..++||||++++|..+... ...+|.|.++..+..++.++.+||+|||..++..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-----------------~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-----------------ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-----------------EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-----------------ccCcccccccceeeeCcEEEEEEecccccccccc
Confidence 45689999999999999999999864111 1223889999998889999999999999999999
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhH
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQ 648 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~ 648 (1363)
++.|+. ...+.|.|+|.++ .+.+ .+....|..+-.+.. ....|++|++||.|..... ..+
T Consensus 75 w~~y~~---~~~~iIfVvDssd---------~~~l-~e~~~~L~~ll~~~~-----~~~~piLIl~NK~D~~~~~--~~~ 134 (175)
T PF00025_consen 75 WKSYFQ---NADGIIFVVDSSD---------PERL-QEAKEELKELLNDPE-----LKDIPILILANKQDLPDAM--SEE 134 (175)
T ss_dssp GGGGHT---TESEEEEEEETTG---------GGGH-HHHHHHHHHHHTSGG-----GTTSEEEEEEESTTSTTSS--THH
T ss_pred ceeecc---ccceeEEEEeccc---------ceee-cccccchhhhcchhh-----cccceEEEEeccccccCcc--hhh
Confidence 999999 8889999999875 2233 333444555544221 1134799999999986432 222
Q ss_pred HHHHHHHHHHHHhc--ccc-CCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 649 LTVSSIQRLKDKFQ--GFV-DFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 649 ~~~~~~~~lr~~f~--~~~-~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
+++..+. ... ...-.++.+|+.+|.|+.+.++.|.+.
T Consensus 135 -------~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 135 -------EIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp -------HHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred -------HHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 2222221 111 122257889999999999999888764
No 142
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.45 E-value=1.3e-12 Score=139.16 Aligned_cols=159 Identities=16% Similarity=0.263 Sum_probs=107.1
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
..|+.++|.+|+|||||++++.+..... ...|.|+.+..+......+.+||++|+..|.....
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~-----------------~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~ 76 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH-----------------ITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWR 76 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc-----------------cCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 5799999999999999999998752111 12366766666655678999999999999988888
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. ...++++|+|+++ ...+ .....|+..+...... ...|+++|+||.|+.... ..+
T Consensus 77 ~~~~---~~~~ii~v~D~~~---------~~~~-~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~--~~~-- 134 (173)
T cd04155 77 NYFE---NTDCLIYVIDSAD---------KKRL-EEAGAELVELLEEEKL-----AGVPVLVFANKQDLATAA--PAE-- 134 (173)
T ss_pred HHhc---CCCEEEEEEeCCC---------HHHH-HHHHHHHHHHHhChhh-----cCCCEEEEEECCCCccCC--CHH--
Confidence 8888 7788999999874 2333 3345555554432111 134799999999985422 111
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+..+.+. .....+....++.+|++++.|++++++.|.+
T Consensus 135 -~i~~~l~--~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 135 -EIAEALN--LHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred -HHHHHcC--CcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1122111 1111111224678999999999999988753
No 143
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=6.5e-14 Score=140.39 Aligned_cols=159 Identities=15% Similarity=0.253 Sum_probs=120.3
Q ss_pred CCCceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCc
Q 000665 488 EPKSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQ 562 (1363)
Q Consensus 488 ~~~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQ 562 (1363)
....+|++++|.+++||+|++++++++ |...+..++ |++.. .+.++.+++.+||+|||
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktI-----------------gvdflerqi~v~~Edvr~mlWdtagq 79 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI-----------------GVDFLERQIKVLIEDVRSMLWDTAGQ 79 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhcccccccccccc-----------------chhhhhHHHHhhHHHHHHHHHHhccc
Confidence 345689999999999999999999988 665554443 33322 12357788999999999
Q ss_pred hhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 563 HEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 563 e~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
++|.++...|++ .+..-+|||+.++ -..+ +.+..|-+.|.+. +..-|.++|.||+|++.+
T Consensus 80 eEfDaItkAyyr---gaqa~vLVFSTTD---------r~SF-ea~~~w~~kv~~e-------~~~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 80 EEFDAITKAYYR---GAQASVLVFSTTD---------RYSF-EATLEWYNKVQKE-------TERIPTVFVQNKIDLVED 139 (246)
T ss_pred hhHHHHHHHHhc---cccceEEEEeccc---------HHHH-HHHHHHHHHHHHH-------hccCCeEEeeccchhhHh
Confidence 999999999999 7888899999885 1223 5668999999884 334479999999999876
Q ss_pred CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 643 PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
...+..+.....+.+..++ +.+|.+..-++...|..|....
T Consensus 140 s~~~~~evE~lak~l~~Rl----------yRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 140 SQMDKGEVEGLAKKLHKRL----------YRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred hhcchHHHHHHHHHhhhhh----------hhhhhhhhhhhHHHHHHHHHHH
Confidence 5555555545555555443 5578888888988888887643
No 144
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-14 Score=177.89 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=49.9
Q ss_pred CCCcceeeccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhc
Q 000665 237 ENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFK 316 (1363)
Q Consensus 237 ~~~~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~ 316 (1363)
...+|+.++++.+....+++.+..+.+|+.|+.++|.|+. +...+...++|+.|++.+|.+. .++..+..
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~-----lp~ri~~~~~L~~l~~~~nel~-----yip~~le~ 308 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA-----LPLRISRITSLVSLSAAYNELE-----YIPPFLEG 308 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHh-----hHHHHhhhhhHHHHHhhhhhhh-----hCCCcccc
Confidence 3456677777777777777777777778888888777733 2222223333444444333332 23334444
Q ss_pred CCCCCEEEccCCCCCHhh
Q 000665 317 NRSLESLYLHGNWFSGVG 334 (1363)
Q Consensus 317 ~~~L~~LdLs~N~l~~~g 334 (1363)
.++|++|||..|+|....
T Consensus 309 ~~sL~tLdL~~N~L~~lp 326 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLPSLP 326 (1081)
T ss_pred cceeeeeeehhccccccc
Confidence 555666666655555443
No 145
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.41 E-value=3.4e-12 Score=141.57 Aligned_cols=166 Identities=20% Similarity=0.273 Sum_probs=112.4
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe----cCceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK----DEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~----~~~~~l~iWDfaGQe~y~ 566 (1363)
+|++++|++|||||||++++.++ +...+.|+ .|..+.... .+.+++.+||+|||++|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t-----------------~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~ 68 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPT-----------------IGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR 68 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCc-----------------eeeeeEEEEEEeCCCEEEEEeecCCCHHHHH
Confidence 79999999999999999999988 44333333 232222221 237889999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
.+++.|+. ....+++|||.+. .....+....|...+....+.. -|+++||||.|+.......
T Consensus 69 ~~~~~y~~---~~~~~l~~~d~~~---------~~~~~~~~~~~~~~l~~~~~~~------~~iilv~nK~Dl~~~~~~~ 130 (219)
T COG1100 69 SLRPEYYR---GANGILIVYDSTL---------RESSDELTEEWLEELRELAPDD------VPILLVGNKIDLFDEQSSS 130 (219)
T ss_pred HHHHHHhc---CCCEEEEEEeccc---------chhhhHHHHHHHHHHHHhCCCC------ceEEEEecccccccchhHH
Confidence 99999999 8999999999874 3445577899999988855322 2799999999997543221
Q ss_pred hHHHHHH------HHHHHHHhccccCCCCcEEEEcCC--CCCChhHHHHHHHHHH
Q 000665 647 MQLTVSS------IQRLKDKFQGFVDFYPTVFTIDAR--SSASVTKLTHHIRKTS 693 (1363)
Q Consensus 647 ~~~~~~~------~~~lr~~f~~~~~i~~~v~~vs~~--~~~~i~~L~~~L~~~~ 693 (1363)
.. +... .......-.........++.+|++ ++.++..++..+....
T Consensus 131 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 131 EE-ILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred HH-HHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence 10 0000 000000000000112236888999 8999999888776543
No 146
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.41 E-value=6.9e-13 Score=129.35 Aligned_cols=163 Identities=19% Similarity=0.299 Sum_probs=115.6
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
++.+.++|-..+||||+++.+..+ +.. ...+|+|..+..++.+++++.+||.|||..|.+++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~e-----------------dmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmW 82 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLE-----------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 82 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchh-----------------hhcccccceeEEeccCceEEEEEecCCCccHHHHH
Confidence 478999999999999999988864 332 12348999999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
..|.+ .-++.+.|+|+.+ +...+-..++++.-|..-.- . .-|+++.|||.|+...... +
T Consensus 83 erycR---~v~aivY~VDaad------~~k~~~sr~EL~~LL~k~~l--------~-gip~LVLGnK~d~~~AL~~--~- 141 (186)
T KOG0075|consen 83 ERYCR---GVSAIVYVVDAAD------PDKLEASRSELHDLLDKPSL--------T-GIPLLVLGNKIDLPGALSK--I- 141 (186)
T ss_pred HHHhh---cCcEEEEEeecCC------cccchhhHHHHHHHhcchhh--------c-CCcEEEecccccCcccccH--H-
Confidence 99999 8899999999986 11222222333433321111 1 2269999999999754322 1
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRT 695 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~ 695 (1363)
++++++- ..++-+-.-.+|.|||++..+++...+.|.+..+.
T Consensus 142 --~li~rmg--L~sitdREvcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 142 --ALIERMG--LSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred --HHHHHhC--ccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 2233221 11222222357899999999999999988875543
No 147
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.41 E-value=1.7e-12 Score=139.15 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=101.9
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE------EE---ecCceEEEEEecCCch
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK------TL---KDEDTRISIWNLAGQH 563 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~------~~---~~~~~~l~iWDfaGQe 563 (1363)
++.++|+.++|||||+++|.+....... ........+..+..++.|+... .| .++.+.+++||++||+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSK---REMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCc---CCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCCh
Confidence 5789999999999999999874110000 0000001111112223444322 12 3568899999999999
Q ss_pred hhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 564 EFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 564 ~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
.|......++. ...++++|+|+++.. +. ..+..|...... ..|+++|+||+|+....
T Consensus 79 ~~~~~~~~~~~---~ad~~i~v~D~~~~~------~~----~~~~~~~~~~~~----------~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 79 DFSYEVSRSLA---ACEGALLLVDATQGV------EA----QTLANFYLALEN----------NLEIIPVINKIDLPSAD 135 (179)
T ss_pred hhHHHHHHHHH---hcCeEEEEEECCCCc------cH----hhHHHHHHHHHc----------CCCEEEEEECCCCCcCC
Confidence 99998888888 788999999997521 11 223444332211 22699999999985422
Q ss_pred chhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 644 SQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 644 ~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.. ...+++.+.++ . . ...+|.+||++|.|++++++.|.+
T Consensus 136 ---~~---~~~~~~~~~~~-~-~-~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 136 ---PE---RVKQQIEDVLG-L-D-PSEAILVSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred ---HH---HHHHHHHHHhC-C-C-cccEEEeeccCCCCHHHHHHHHHh
Confidence 11 12233444432 1 1 124789999999999999988764
No 148
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.39 E-value=5.7e-12 Score=132.58 Aligned_cols=161 Identities=15% Similarity=0.157 Sum_probs=94.8
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecC-ceEEEEEecCCchhhhhcccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDE-DTRISIWNLAGQHEFYSLHDL 571 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~-~~~l~iWDfaGQe~y~~th~~ 571 (1363)
-+.++|+++||||||+++|.+..... .+ +......|.++....+.-. ...+.+||++||+.|......
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~-~~----------~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDR-LP----------EEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCccccc-ch----------hhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHh
Confidence 47899999999999999998531100 00 0000111333222223222 678999999999999765555
Q ss_pred ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHH
Q 000665 572 MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTV 651 (1363)
Q Consensus 572 Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~ 651 (1363)
++. ...+.++|+|+++.. . . +...++..+... ..+|+++|+||+|+.... ..+
T Consensus 71 ~~~---~ad~ii~V~d~~~~~------~-~----~~~~~~~~~~~~--------~~~~~ilv~NK~Dl~~~~--~~~--- 123 (164)
T cd04171 71 GAG---GIDLVLLVVAADEGI------M-P----QTREHLEILELL--------GIKRGLVVLTKADLVDED--WLE--- 123 (164)
T ss_pred hhh---cCCEEEEEEECCCCc------c-H----hHHHHHHHHHHh--------CCCcEEEEEECccccCHH--HHH---
Confidence 566 688999999986410 0 1 111222222221 123699999999996421 111
Q ss_pred HHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 652 SSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 652 ~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...+++.+.+.........++++|++++.|++++++.|.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 124 LVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 1123333333221001236799999999999999987753
No 149
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.38 E-value=5.3e-12 Score=130.84 Aligned_cols=154 Identities=15% Similarity=0.218 Sum_probs=103.8
Q ss_pred eeEEecCccccchHHHHHHHhhcC-CCCCCcceeecccccccccCccCCcceEEEE--EecC--ceEEEEEecCCchhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNF-SSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT--LKDE--DTRISIWNLAGQHEFY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~-~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~--~~~~--~~~l~iWDfaGQe~y~ 566 (1363)
+|+.++|.+|+|||||++++.... ...+ .+|.+.++.. +..+ ...+.+||++||+.|.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 64 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEY-----------------KPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYR 64 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcC-----------------CCCceeeeeEEEEEECCEEEEEEEEECCCcccch
Confidence 699999999999999999999762 1111 1233333322 3223 3889999999999999
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
...+.++. ....++.++|+... ..........|+..+...... ..|+++|+||.|+.... .
T Consensus 65 ~~~~~~~~---~~~~~i~~~d~~~~--------v~~~~~~~~~~~~~~~~~~~~------~~p~ivv~nK~D~~~~~--~ 125 (161)
T TIGR00231 65 AIRRLYYR---AVESSLRVFDIVIL--------VLDVEEILEKQTKEIIHHAES------NVPIILVGNKIDLRDAK--L 125 (161)
T ss_pred HHHHHHHh---hhhEEEEEEEEeee--------ehhhhhHhHHHHHHHHHhccc------CCcEEEEEEcccCCcch--h
Confidence 98888887 77889999998741 123334455787777653321 23699999999996432 1
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
.+ ........... ..++.+||+++.|++++++.|+
T Consensus 126 ~~----~~~~~~~~~~~-----~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 126 KT----HVAFLFAKLNG-----EPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hH----HHHHHHhhccC-----CceEEeecCCCCCHHHHHHHhh
Confidence 11 11111222211 2479999999999999998774
No 150
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.34 E-value=1.4e-11 Score=130.37 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=98.7
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEec---CceEEEEEecCCchhhhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKD---EDTRISIWNLAGQHEFYSL 568 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~---~~~~l~iWDfaGQe~y~~t 568 (1363)
.+.++|.+++|||||+++|..+ +.....+ ..|..+....+.. ....+.+||++|++.|..+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~---------------~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAG---------------GITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM 66 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCC---------------CeEEeeccEEEecccCCcceEEEEeCCCcHHHHHH
Confidence 4889999999999999999876 2211111 1122222223322 4778999999999999999
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhH
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQ 648 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~ 648 (1363)
+..++. ...++++|+|+++.. ..+.. .. +..+.. . ..|+++|+||+|+.... .+
T Consensus 67 ~~~~~~---~~d~il~v~d~~~~~------~~~~~-~~----~~~~~~--------~-~~p~ivv~NK~Dl~~~~---~~ 120 (168)
T cd01887 67 RARGAS---LTDIAILVVAADDGV------MPQTI-EA----IKLAKA--------A-NVPFIVALNKIDKPNAN---PE 120 (168)
T ss_pred HHHHHh---hcCEEEEEEECCCCc------cHHHH-HH----HHHHHH--------c-CCCEEEEEEceeccccc---HH
Confidence 988888 788999999997411 11111 11 122222 1 12699999999986322 11
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 649 LTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 649 ~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
...+.++.+.............++.+|++++.|++++++.|.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 121 RVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 111122221111000011123679999999999999999887643
No 151
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.34 E-value=1.4e-11 Score=123.06 Aligned_cols=160 Identities=16% Similarity=0.215 Sum_probs=109.4
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
.+++.++|..++||||++++|.+.- .+....|.|.++++...+..++++||.|||......|+
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~-----------------~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~ 78 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED-----------------TDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWK 78 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC-----------------ccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHH
Confidence 5899999999999999999999762 12234599999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.|+. +....|-|+|.++. ...++....+..-|. ..+.-+ .|++|++||.|....- ..+.+
T Consensus 79 nYfe---stdglIwvvDssD~------~r~~e~~~~L~~lL~--eerlaG-------~~~Lvlank~dl~~~l--~~~~i 138 (185)
T KOG0073|consen 79 NYFE---STDGLIWVVDSSDR------MRMQECKQELTELLV--EERLAG-------APLLVLANKQDLPGAL--SLEEI 138 (185)
T ss_pred Hhhh---ccCeEEEEEECchH------HHHHHHHHHHHHHHh--hhhhcC-------CceEEEEecCcCcccc--CHHHH
Confidence 9999 88889999998751 123333233333332 122212 2699999999996432 22211
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
. ..-.+.+-++.. .-.++.+|+-+|.++.+-++.|..
T Consensus 139 ~-~~~~L~~l~ks~---~~~l~~cs~~tge~l~~gidWL~~ 175 (185)
T KOG0073|consen 139 S-KALDLEELAKSH---HWRLVKCSAVTGEDLLEGIDWLCD 175 (185)
T ss_pred H-HhhCHHHhcccc---CceEEEEeccccccHHHHHHHHHH
Confidence 1 112222222221 235788899999766555544443
No 152
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.34 E-value=1.2e-11 Score=131.14 Aligned_cols=157 Identities=13% Similarity=0.149 Sum_probs=96.3
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhc----
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSL---- 568 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~t---- 568 (1363)
+++++|.+|+|||||+++|.+..... .+. ...|.++.......+.+.+.+||++|+......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~------------~~~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 67 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEV------------APY--PFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNT 67 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCcc------------CCC--CCcccceeEEEEccCceEEEEEECCCcCCccccCCch
Confidence 68999999999999999999762110 000 112555555555456789999999998431110
Q ss_pred --cccccc-cCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 569 --HDLMFP-GHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 569 --h~~Flt-~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
.+.+.. .+ ...++++|+|+++.. +. .. +....|+..++...+ ..||++|+||+|+.....
T Consensus 68 ~~~~~~~~~~~-~~d~~l~v~d~~~~~------~~-~~-~~~~~~~~~l~~~~~-------~~pvilv~NK~Dl~~~~~- 130 (168)
T cd01897 68 IEMQAITALAH-LRAAVLFLFDPSETC------GY-SL-EEQLSLFEEIKPLFK-------NKPVIVVLNKIDLLTFED- 130 (168)
T ss_pred HHHHHHHHHHh-ccCcEEEEEeCCccc------cc-ch-HHHHHHHHHHHhhcC-------cCCeEEEEEccccCchhh-
Confidence 011100 01 235788999987521 11 11 334678888865322 237999999999964221
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.. . .+.+. ... ...++.+||+++.|++++++.|.+
T Consensus 131 -~~---~-~~~~~-~~~-----~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 131 -LS---E-IEEEE-ELE-----GEEVLKISTLTEEGVDEVKNKACE 165 (168)
T ss_pred -HH---H-HHHhh-hhc-----cCceEEEEecccCCHHHHHHHHHH
Confidence 11 1 11111 111 135789999999999999988765
No 153
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=3e-12 Score=131.83 Aligned_cols=162 Identities=15% Similarity=0.202 Sum_probs=110.9
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
..++++++|-.+|||||++..|+.+... .+.+|.|..+.++.-++++|.+||.|||+.++..+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~v-----------------ttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW 78 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-----------------TTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLW 78 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcc-----------------cCCCccccceeEEEEcceEEEEEecCCCcccccch
Confidence 4579999999999999999999865211 11348999999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
..|+. .....|.|+|.++++ ...+. ..=|..+-.+.. ....|+++.+||.|....-.. .+
T Consensus 79 ~~Y~~---~t~~lIfVvDS~Dr~------Ri~ea----k~eL~~~l~~~~-----l~~~~llv~aNKqD~~~als~--~e 138 (181)
T KOG0070|consen 79 KHYFQ---NTQGLIFVVDSSDRE------RIEEA----KEELHRMLAEPE-----LRNAPLLVFANKQDLPGALSA--AE 138 (181)
T ss_pred hhhcc---CCcEEEEEEeCCcHH------HHHHH----HHHHHHHHcCcc-----cCCceEEEEechhhccccCCH--HH
Confidence 99999 889999999988621 22233 333333333221 123479999999999754321 11
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
+ .+.+.- .......-.+..+++.+|.|+.+-.+.|.+.+
T Consensus 139 i---~~~L~l--~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 139 I---TNKLGL--HSLRSRNWHIQSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred H---HhHhhh--hccCCCCcEEeeccccccccHHHHHHHHHHHH
Confidence 1 111111 01111122456678888999888777776543
No 154
>PTZ00099 rab6; Provisional
Probab=99.32 E-value=1.2e-11 Score=132.35 Aligned_cols=126 Identities=14% Similarity=0.278 Sum_probs=90.5
Q ss_pred CCcceEEEE----EecCceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHH
Q 000665 538 RPVGMKIKT----LKDEDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRF 613 (1363)
Q Consensus 538 ~T~Gi~i~~----~~~~~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~ 613 (1363)
.|.|++... ..++.+++.|||++||+.|..+.+.|+. .+.++|+|||+++ .+++ +.+..|+..
T Consensus 11 ~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~---~ad~~ilv~D~t~---------~~sf-~~~~~w~~~ 77 (176)
T PTZ00099 11 STIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIR---DSAAAIVVYDITN---------RQSF-ENTTKWIQD 77 (176)
T ss_pred CccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhC---CCcEEEEEEECCC---------HHHH-HHHHHHHHH
Confidence 466655532 3356899999999999999999999999 8999999999984 3344 555789998
Q ss_pred HHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 614 IVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 614 I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
+..... ...|++|||||+|+........+++ ..+...+. ..++++||+++.||+++++.|.+.
T Consensus 78 i~~~~~------~~~piilVgNK~DL~~~~~v~~~e~----~~~~~~~~------~~~~e~SAk~g~nV~~lf~~l~~~ 140 (176)
T PTZ00099 78 ILNERG------KDVIIALVGNKTDLGDLRKVTYEEG----MQKAQEYN------TMFHETSAKAGHNIKVLFKKIAAK 140 (176)
T ss_pred HHHhcC------CCCeEEEEEECcccccccCCCHHHH----HHHHHHcC------CEEEEEECCCCCCHHHHHHHHHHH
Confidence 875321 1347999999999964333332222 12222221 235889999999999999988753
No 155
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.31 E-value=2.1e-12 Score=163.82 Aligned_cols=238 Identities=15% Similarity=0.134 Sum_probs=145.0
Q ss_pred CccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHHHH
Q 000665 103 NVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMI 182 (1363)
Q Consensus 103 ~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L 182 (1363)
+|+.|+|++|+++.... ..++|++|+|++|+|+.. .. ..++|+.|+|++|.|.. +...
T Consensus 223 ~L~~L~L~~N~Lt~LP~--------lp~~Lk~LdLs~N~LtsL-----P~---lp~sL~~L~Ls~N~L~~-----Lp~l- 280 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQLTSL-----PV---LPPGLLELSIFSNPLTH-----LPAL- 280 (788)
T ss_pred CCCEEEccCCcCCCCCC--------CCCCCcEEEecCCccCcc-----cC---cccccceeeccCCchhh-----hhhc-
Confidence 46666666666654211 134566666666666521 11 12356666666666543 2211
Q ss_pred hcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCC
Q 000665 183 EANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNT 262 (1363)
Q Consensus 183 ~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~ 262 (1363)
..+|+.|+|++|.+..- +. ..++|+.|++++| .+..++. ...
T Consensus 281 --p~~L~~L~Ls~N~Lt~L----P~---~p~~L~~LdLS~N--------------------------~L~~Lp~---lp~ 322 (788)
T PRK15387 281 --PSGLCKLWIFGNQLTSL----PV---LPPGLQELSVSDN--------------------------QLASLPA---LPS 322 (788)
T ss_pred --hhhcCEEECcCCccccc----cc---cccccceeECCCC--------------------------ccccCCC---Ccc
Confidence 13455666666654321 11 1235666666655 3332222 124
Q ss_pred cccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhh
Q 000665 263 TVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPL 342 (1363)
Q Consensus 263 ~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L 342 (1363)
+|+.|++++|+|+... .. ..+|+.|+|++|+|+. ++. ...+|+.|++++|+|+... .
T Consensus 323 ~L~~L~Ls~N~L~~LP-----~l---p~~Lq~LdLS~N~Ls~-----LP~---lp~~L~~L~Ls~N~L~~LP--~----- 379 (788)
T PRK15387 323 ELCKLWAYNNQLTSLP-----TL---PSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTSLP--A----- 379 (788)
T ss_pred cccccccccCcccccc-----cc---ccccceEecCCCccCC-----CCC---CCcccceehhhccccccCc--c-----
Confidence 5788899999887522 11 2478999999999885 222 1357888999999988432 1
Q ss_pred hhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeec
Q 000665 343 SRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQG 422 (1363)
Q Consensus 343 ~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~ 422 (1363)
...+|+.|+|+ +|+|+..+ . ..++|+.|++++| .++. ++.. ..+|+.|+|++
T Consensus 380 ---------l~~~L~~LdLs--~N~Lt~LP-----~---l~s~L~~LdLS~N-~Lss-----IP~l---~~~L~~L~Ls~ 431 (788)
T PRK15387 380 ---------LPSGLKELIVS--GNRLTSLP-----V---LPSELKELMVSGN-RLTS-----LPML---PSGLLSLSVYR 431 (788)
T ss_pred ---------cccccceEEec--CCcccCCC-----C---cccCCCEEEccCC-cCCC-----CCcc---hhhhhhhhhcc
Confidence 12468899998 57887432 1 1256899999999 4542 3322 24678899999
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCCC
Q 000665 423 CKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNS 458 (1363)
Q Consensus 423 N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~~ 458 (1363)
|+. ..|+..+..++.|+.|+|++|+|+..
T Consensus 432 NqL-------t~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 432 NQL-------TRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred Ccc-------cccChHHhhccCCCeEECCCCCCCch
Confidence 972 24777888889999999999999853
No 156
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.29 E-value=4.1e-12 Score=161.24 Aligned_cols=247 Identities=12% Similarity=0.107 Sum_probs=161.2
Q ss_pred HHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCC
Q 000665 91 MRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSI 170 (1363)
Q Consensus 91 ~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i 170 (1363)
++.+..++.+ .-..|+|++|.++... ..+. ++|+.|++++|+|+. +.. ..++|++|+|++|+|
T Consensus 192 ~~r~~~Cl~~--~~~~LdLs~~~LtsLP-----~~l~--~~L~~L~L~~N~Lt~-----LP~---lp~~Lk~LdLs~N~L 254 (788)
T PRK15387 192 VQKMRACLNN--GNAVLNVGESGLTTLP-----DCLP--AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQL 254 (788)
T ss_pred HHHHHHHhcC--CCcEEEcCCCCCCcCC-----cchh--cCCCEEEccCCcCCC-----CCC---CCCCCcEEEecCCcc
Confidence 4444444443 3467899888887532 2221 378899999998873 211 246789999999988
Q ss_pred ChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCchh
Q 000665 171 GSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSG 250 (1363)
Q Consensus 171 ~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g 250 (1363)
+.. +. ..++|+.|+|++|.+.. ++. -..+|+.|++++|.
T Consensus 255 tsL-----P~---lp~sL~~L~Ls~N~L~~----Lp~---lp~~L~~L~Ls~N~-------------------------- 293 (788)
T PRK15387 255 TSL-----PV---LPPGLLELSIFSNPLTH----LPA---LPSGLCKLWIFGNQ-------------------------- 293 (788)
T ss_pred Ccc-----cC---cccccceeeccCCchhh----hhh---chhhcCEEECcCCc--------------------------
Confidence 752 11 13578888888886432 221 12457778888772
Q ss_pred HHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCC
Q 000665 251 SCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWF 330 (1363)
Q Consensus 251 ~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l 330 (1363)
+..++. ..++|+.|+|++|+|+... . ...+|+.|++++|+|+. ++. ...+|++|+|++|+|
T Consensus 294 Lt~LP~---~p~~L~~LdLS~N~L~~Lp-----~---lp~~L~~L~Ls~N~L~~-----LP~---lp~~Lq~LdLS~N~L 354 (788)
T PRK15387 294 LTSLPV---LPPGLQELSVSDNQLASLP-----A---LPSELCKLWAYNNQLTS-----LPT---LPSGLQELSVSDNQL 354 (788)
T ss_pred cccccc---cccccceeECCCCccccCC-----C---CcccccccccccCcccc-----ccc---cccccceEecCCCcc
Confidence 112221 1357999999999997522 1 12468899999999984 222 125799999999999
Q ss_pred CHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHh
Q 000665 331 SGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQ 410 (1363)
Q Consensus 331 ~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~ 410 (1363)
+..+. ...+|+.|+++ +|+|+... .. ..+|+.|+|++| .++. ++..
T Consensus 355 s~LP~----------------lp~~L~~L~Ls--~N~L~~LP-----~l---~~~L~~LdLs~N-~Lt~-----LP~l-- 400 (788)
T PRK15387 355 ASLPT----------------LPSELYKLWAY--NNRLTSLP-----AL---PSGLKELIVSGN-RLTS-----LPVL-- 400 (788)
T ss_pred CCCCC----------------CCcccceehhh--ccccccCc-----cc---ccccceEEecCC-cccC-----CCCc--
Confidence 86331 12467888887 68887532 22 246999999999 4552 3321
Q ss_pred hCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCCCC
Q 000665 411 KNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNSG 459 (1363)
Q Consensus 411 ~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~~g 459 (1363)
..+|+.|+|++|.. .. ++.. ..+|+.|+|++|.|+..+
T Consensus 401 -~s~L~~LdLS~N~L--ss-----IP~l---~~~L~~L~Ls~NqLt~LP 438 (788)
T PRK15387 401 -PSELKELMVSGNRL--TS-----LPML---PSGLLSLSVYRNQLTRLP 438 (788)
T ss_pred -ccCCCEEEccCCcC--CC-----CCcc---hhhhhhhhhccCcccccC
Confidence 36899999999983 21 2221 235788999999999655
No 157
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.27 E-value=4.5e-11 Score=130.20 Aligned_cols=161 Identities=18% Similarity=0.236 Sum_probs=98.8
Q ss_pred eEEecCccccchHHHHHHHhhc---CCCCCCcceeecccccccccCccCCcceEE----EEEecCceEEEEEecCCchhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN---FSSSKLPYIEQVRTLVNPVEQAVRPVGMKI----KTLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~---~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i----~~~~~~~~~l~iWDfaGQe~y 565 (1363)
++.++|..++|||||+++|... +...+. ++ .......+...+.|+.+ ..+..+...+.+||++||+.|
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~--~~---~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 78 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEE--VE---ERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF 78 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCc--cc---ccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH
Confidence 7899999999999999999962 322110 00 00000001122344332 334467889999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
......++. ...++++|+|+++. . ..+...|+..+... ..|+++|+||+|+.....
T Consensus 79 ~~~~~~~~~---~~d~~ilV~d~~~~--------~---~~~~~~~~~~~~~~---------~~p~iiv~NK~Dl~~~~~- 134 (194)
T cd01891 79 GGEVERVLS---MVDGVLLLVDASEG--------P---MPQTRFVLKKALEL---------GLKPIVVINKIDRPDARP- 134 (194)
T ss_pred HHHHHHHHH---hcCEEEEEEECCCC--------c---cHHHHHHHHHHHHc---------CCCEEEEEECCCCCCCCH-
Confidence 999999998 88899999999741 1 12224455544331 225899999999964221
Q ss_pred hhHHHHHHHHHHHHHh---cccc-CCCCcEEEEcCCCCCChhHHHH
Q 000665 646 DMQLTVSSIQRLKDKF---QGFV-DFYPTVFTIDARSSASVTKLTH 687 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f---~~~~-~i~~~v~~vs~~~~~~i~~L~~ 687 (1363)
+. ..+++++.+ .... .+.-+++++|+++|.|++++.+
T Consensus 135 --~~---~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 135 --EE---VVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred --HH---HHHHHHHHHHHhCCccccCccCEEEeehhcccccccccc
Confidence 11 122222222 1111 1123678999999988866544
No 158
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.27 E-value=1.7e-11 Score=126.18 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=87.4
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCc-----hhhhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQ-----HEFYS 567 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQ-----e~y~~ 567 (1363)
|+.++|++|||||||++++.+.... + ..|.+++.. . .+||++|+ +.|..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~-----------------~~t~~~~~~---~-----~~iDt~G~~~~~~~~~~~ 55 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-Y-----------------KKTQAVEYN---D-----GAIDTPGEYVENRRLYSA 55 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-c-----------------ccceeEEEc---C-----eeecCchhhhhhHHHHHH
Confidence 8999999999999999999876210 0 124444432 1 68999998 34555
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
+.+. +. ..+++++|||+++.. +... ..|+.... . |+++|+||+|+... ....
T Consensus 56 ~~~~-~~---~ad~vilv~d~~~~~------s~~~-----~~~~~~~~-----------~-p~ilv~NK~Dl~~~-~~~~ 107 (142)
T TIGR02528 56 LIVT-AA---DADVIALVQSATDPE------SRFP-----PGFASIFV-----------K-PVIGLVTKIDLAEA-DVDI 107 (142)
T ss_pred HHHH-hh---cCCEEEEEecCCCCC------cCCC-----hhHHHhcc-----------C-CeEEEEEeeccCCc-ccCH
Confidence 6554 56 789999999998632 2111 24544321 1 68999999998632 2222
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
+.. +++.+... ..++|.+|++++.|++++++.|.
T Consensus 108 ~~~----~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 108 ERA----KELLETAG-----AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHH----HHHHHHcC-----CCcEEEEecCCCCCHHHHHHHHh
Confidence 211 22222221 12578999999999999998764
No 159
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=7.5e-11 Score=114.39 Aligned_cols=118 Identities=19% Similarity=0.366 Sum_probs=89.5
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
..++++.+|-.++||||++-.|+-+.+.. ..+|+|+.+.+++-+++.|++||.|||+.-+..|
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-----------------~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplW 78 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVT-----------------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 78 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcc-----------------cccccceeEEEEEeeeeEEeeeeccCchhhhHHH
Confidence 35799999999999999999999764321 2349999999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHh-hchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVS-NSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~-~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
++|++ .....|.|.|..+. .+.++...++ ..|.. +.-. ..+++|.+||-|+....
T Consensus 79 rhYy~---gtqglIFV~Dsa~~------dr~eeAr~EL----h~ii~~~em~------~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 79 RHYYT---GTQGLIFVVDSADR------DRIEEARNEL----HRIINDREMR------DAIILILANKQDLPDAM 134 (180)
T ss_pred Hhhcc---CCceEEEEEeccch------hhHHHHHHHH----HHHhCCHhhh------cceEEEEecCccccccc
Confidence 99999 77778888997752 2334443333 33333 2111 23688889999997543
No 160
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.26 E-value=1.6e-14 Score=161.88 Aligned_cols=266 Identities=16% Similarity=0.195 Sum_probs=177.6
Q ss_pred CccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHHHH
Q 000665 103 NVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMI 182 (1363)
Q Consensus 103 ~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L 182 (1363)
.++.+.+++|.+... ..-++....+..|++.+|.+.. +..++.....+..|+.+.|++.. +++.+
T Consensus 46 ~l~~lils~N~l~~l-----~~dl~nL~~l~vl~~~~n~l~~-----lp~aig~l~~l~~l~vs~n~ls~-----lp~~i 110 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVL-----REDLKNLACLTVLNVHDNKLSQ-----LPAAIGELEALKSLNVSHNKLSE-----LPEQI 110 (565)
T ss_pred chhhhhhccCchhhc-----cHhhhcccceeEEEeccchhhh-----CCHHHHHHHHHHHhhcccchHhh-----ccHHH
Confidence 455566666654331 2223344556666666666542 22223333345555666665543 44445
Q ss_pred hcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCC
Q 000665 183 EANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNT 262 (1363)
Q Consensus 183 ~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~ 262 (1363)
..+.+|..|+++.|..... ...+.++..|+ .++.+.+.+..++..+..+.
T Consensus 111 ~s~~~l~~l~~s~n~~~el----~~~i~~~~~l~--------------------------dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNELKEL----PDSIGRLLDLE--------------------------DLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred hhhhhhhhhhccccceeec----CchHHHHhhhh--------------------------hhhccccccccCchHHHHHH
Confidence 5555566666666653321 11222222333 33444455566677777778
Q ss_pred cccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhh
Q 000665 263 TVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPL 342 (1363)
Q Consensus 263 ~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L 342 (1363)
+|..|++.+|++.......++ .+.|++||...|-++ .++..++...+|.-|+|..|.|...+ .+
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~-----m~~L~~ld~~~N~L~-----tlP~~lg~l~~L~~LyL~~Nki~~lP--ef---- 224 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIA-----MKRLKHLDCNSNLLE-----TLPPELGGLESLELLYLRRNKIRFLP--EF---- 224 (565)
T ss_pred HHHHhhccccchhhCCHHHHH-----HHHHHhcccchhhhh-----cCChhhcchhhhHHHHhhhcccccCC--CC----
Confidence 899999999999875554444 478999999999887 47777888899999999999997544 22
Q ss_pred hhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeec
Q 000665 343 SRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQG 422 (1363)
Q Consensus 343 ~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~ 422 (1363)
..|..|++|+++ .|+|....+ +.++..++|..|||.+|+ ++.++..+..+.+|.+||+|+
T Consensus 225 --------~gcs~L~Elh~g--~N~i~~lpa----e~~~~L~~l~vLDLRdNk------lke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 225 --------PGCSLLKELHVG--ENQIEMLPA----EHLKHLNSLLVLDLRDNK------LKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred --------CccHHHHHHHhc--ccHHHhhHH----HHhcccccceeeeccccc------cccCchHHHHhhhhhhhcccC
Confidence 456778889887 678766543 344577889999999996 667899998899999999999
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCC
Q 000665 423 CKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKN 457 (1363)
Q Consensus 423 N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~ 457 (1363)
|. + ..++..++.+ +|+.|-+.|||+..
T Consensus 285 N~--i-----s~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 285 ND--I-----SSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred Cc--c-----ccCCcccccc-eeeehhhcCCchHH
Confidence 97 2 2367778777 89999999999875
No 161
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.26 E-value=6.5e-11 Score=125.54 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=95.4
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecC-ceEEEEEecCCch----hhhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDE-DTRISIWNLAGQH----EFYS 567 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~-~~~l~iWDfaGQe----~y~~ 567 (1363)
.+.++|.+|||||||+++|.+.... ++. .|. .|....+.....+ ...+.+||++|+. .+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-----v~~-----~~~----~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 67 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-----IAD-----YPF----TTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKG 67 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-----ccC-----CCc----cccCCcceEEEcCCCCeEEEEecCcccCcccccCC
Confidence 5889999999999999999865210 000 000 1111111122223 3589999999974 2222
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
+-+.|+.......++++|+|+++. ++..+.+..|...+....+. ....|+++|+||+|+......
T Consensus 68 ~~~~~~~~~~~~d~vi~v~D~~~~---------~~~~~~~~~~~~~l~~~~~~----~~~~p~ivv~NK~Dl~~~~~~-- 132 (170)
T cd01898 68 LGHRFLRHIERTRLLLHVIDLSGD---------DDPVEDYKTIRNELELYNPE----LLEKPRIVVLNKIDLLDEEEL-- 132 (170)
T ss_pred chHHHHHHHHhCCEEEEEEecCCC---------CCHHHHHHHHHHHHHHhCcc----ccccccEEEEEchhcCCchhh--
Confidence 222333311146799999999851 01225568888888764321 113468999999998643211
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
. ...+.+.... ....++.+|++++.|++++++.|.+
T Consensus 133 ~---~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 133 F---ELLKELLKEL-----WGKPVFPISALTGEGLDELLRKLAE 168 (170)
T ss_pred H---HHHHHHHhhC-----CCCCEEEEecCCCCCHHHHHHHHHh
Confidence 1 1122222121 1135789999999999999988764
No 162
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.24 E-value=4.5e-11 Score=117.71 Aligned_cols=159 Identities=22% Similarity=0.372 Sum_probs=113.6
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~ 564 (1363)
-.+|+-++|++.+|||||+-...++ +...+ ..|.|++... ..+..+.|+|||.|||++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~-----------------~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~ 81 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEY-----------------TQTLGVNFMDKTVSIRGTDISFSIWDLGGQRE 81 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHH-----------------HHHhCccceeeEEEecceEEEEEEEecCCcHh
Confidence 4689999999999999999888876 32222 2355655443 236788999999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|..+.+.-.. .....+.+||+++ ..+. ..+..|.+..+...+.|+ -|+||||.|..-.-+
T Consensus 82 ~~n~lPiac~---dsvaIlFmFDLt~---------r~TL-nSi~~WY~QAr~~NktAi-------PilvGTKyD~fi~lp 141 (205)
T KOG1673|consen 82 FINMLPIACK---DSVAILFMFDLTR---------RSTL-NSIKEWYRQARGLNKTAI-------PILVGTKYDLFIDLP 141 (205)
T ss_pred hhccCceeec---CcEEEEEEEecCc---------hHHH-HHHHHHHHHHhccCCccc-------eEEeccchHhhhcCC
Confidence 9999998776 6778889999985 2233 677999998887665554 489999999864433
Q ss_pred hhhH-HHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 645 QDMQ-LTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 645 ~~~~-~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+.| .+... ..+|...+ ..++|+.|+...-++.+.|+.+..
T Consensus 142 ~e~Q~~I~~q----ar~YAk~m--nAsL~F~Sts~sINv~KIFK~vlA 183 (205)
T KOG1673|consen 142 PELQETISRQ----ARKYAKVM--NASLFFCSTSHSINVQKIFKIVLA 183 (205)
T ss_pred HHHHHHHHHH----HHHHHHHh--CCcEEEeeccccccHHHHHHHHHH
Confidence 3333 22222 22333332 246788999889999998876544
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.23 E-value=1.5e-10 Score=142.93 Aligned_cols=170 Identities=14% Similarity=0.196 Sum_probs=104.5
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCc--------
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQ-------- 562 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQ-------- 562 (1363)
..|+.++|.++||||||+++|.+...... .+.+++ |.......+..++..+.+||+||+
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~-----------s~~~gt--T~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~ 277 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVV-----------DDVAGT--TVDPVDSLIELGGKTWRFVDTAGLRRRVKQAS 277 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccc-----------cCCCCc--cCCcceEEEEECCEEEEEEECCCccccccccc
Confidence 47999999999999999999997621100 111111 111111222234456789999995
Q ss_pred --hhhhhcc-ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCC
Q 000665 563 --HEFYSLH-DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDK 639 (1363)
Q Consensus 563 --e~y~~th-~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~ 639 (1363)
+.|.... ..++. ...++++|+|+++. .+.+. ..|+..+... ..|++||+||+|+
T Consensus 278 ~~e~~~~~~~~~~i~---~ad~vilV~Da~~~------~s~~~-----~~~~~~~~~~---------~~piIiV~NK~Dl 334 (472)
T PRK03003 278 GHEYYASLRTHAAIE---AAEVAVVLIDASEP------ISEQD-----QRVLSMVIEA---------GRALVLAFNKWDL 334 (472)
T ss_pred hHHHHHHHHHHHHHh---cCCEEEEEEeCCCC------CCHHH-----HHHHHHHHHc---------CCCEEEEEECccc
Confidence 3333332 22456 78999999999852 12211 2355555431 2369999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHhhcCch
Q 000665 640 INQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRTILQRVPRV 703 (1363)
Q Consensus 640 ~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~i~~~~P~~ 703 (1363)
.... ..+ ...+.+...+... . ..+++++||++|.|++++++.+.+.......++|..
T Consensus 335 ~~~~--~~~---~~~~~i~~~l~~~-~-~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~ 391 (472)
T PRK03003 335 VDED--RRY---YLEREIDRELAQV-P-WAPRVNISAKTGRAVDKLVPALETALESWDTRIPTG 391 (472)
T ss_pred CChh--HHH---HHHHHHHHhcccC-C-CCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHH
Confidence 6421 111 1223344333321 1 135788999999999999999988777776777766
No 164
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.22 E-value=1.2e-10 Score=126.72 Aligned_cols=160 Identities=14% Similarity=0.215 Sum_probs=97.6
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC-------
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG------- 561 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG------- 561 (1363)
...++.++|.+|+|||||+++|.+. +.....++. ..|..+....+ ...+.+||++|
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~-------------~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~ 86 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTP-------------GRTQLINFFEV---NDKLRLVDLPGYGYAKVS 86 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC-------------CceeEEEEEec---CCeEEEeCCCCCCCcCCC
Confidence 3469999999999999999999975 222211111 12333333332 36899999999
Q ss_pred ---chhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccC
Q 000665 562 ---QHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYD 638 (1363)
Q Consensus 562 ---Qe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D 638 (1363)
++.|..+.+.|++....-.++++|+|.++. .......+..|+... ..|+++|+||+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~i~~~l~~~------------~~~~iiv~nK~D 146 (196)
T PRK00454 87 KEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHP--------LKELDLQMIEWLKEY------------GIPVLIVLTKAD 146 (196)
T ss_pred chHHHHHHHHHHHHHHhCccceEEEEEEecCCC--------CCHHHHHHHHHHHHc------------CCcEEEEEECcc
Confidence 455656656667622122467778887641 122223344454211 125999999999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 639 KINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
+.+.. ..+. ..+.++..+... ...++++|++++.|++++++.|.+..
T Consensus 147 l~~~~--~~~~---~~~~i~~~l~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 147 KLKKG--ERKK---QLKKVRKALKFG---DDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred cCCHH--HHHH---HHHHHHHHHHhc---CCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 96432 1221 223333333221 23678999999999999999887643
No 165
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.22 E-value=2.8e-11 Score=137.65 Aligned_cols=357 Identities=15% Similarity=0.156 Sum_probs=230.9
Q ss_pred hHHHHHhhhCCccChhhhhhHHHHHHHH--HHhhhhC----------CCccEEEEecCCCCHHHHHHHHHHhhcC-CCcc
Q 000665 39 CHQETENSMNINIGKDTLLYFPHLLTLL--VTAEKAH----------TSLKHLEFHSVEWEIEQMRILGLLLDCS-SNVK 105 (1363)
Q Consensus 39 ~~~~l~~~~~~~is~~~~~~l~~~l~~L--~~~l~~~----------~~L~~L~Ls~~~i~~~~~~~L~~~L~~~-~~L~ 105 (1363)
+.+....+....++++........++.. ..+-... ...+.++|-.-...-++ ..+...+..+ ..|+
T Consensus 63 rra~~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g-~VV~~~~~Rcgg~lk 141 (483)
T KOG4341|consen 63 RRAADNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG-GVVENMISRCGGFLK 141 (483)
T ss_pred hhhhhcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC-cceehHhhhhccccc
Confidence 3445566666777777655555555333 2222221 22333333222110010 0122223322 5689
Q ss_pred EEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCC-CCHHHHHHHHHHhccCCCccEEEccC-CCCChhhHHHHHHHHh
Q 000665 106 QVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESG-IKNAGASLLASALKVNDTLEELQIWE-DSIGSKGAEELSKMIE 183 (1363)
Q Consensus 106 ~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~-I~~~g~~~L~~~L~~~~sL~~L~Ls~-N~i~~~g~~~L~~~L~ 183 (1363)
+|.|++..- .+...+......|+++++|++.+|. |++..+..++. .++.|++|+|.. -.|++...+.+++.
T Consensus 142 ~LSlrG~r~--v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~---~C~~l~~l~L~~c~~iT~~~Lk~la~g-- 214 (483)
T KOG4341|consen 142 ELSLRGCRA--VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLAR---YCRKLRHLNLHSCSSITDVSLKYLAEG-- 214 (483)
T ss_pred ccccccccc--CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHH---hcchhhhhhhcccchhHHHHHHHHHHh--
Confidence 999987642 2333444555689999999988775 77777666664 477899999988 56888776666544
Q ss_pred cCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCCc
Q 000665 184 ANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTT 263 (1363)
Q Consensus 184 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~ 263 (1363)
+++|+.|++|.|..+.+ ..+......++.++.+.++||.. + +.+.+..+-..+..
T Consensus 215 -C~kL~~lNlSwc~qi~~-~gv~~~~rG~~~l~~~~~kGC~e--------------------~---~le~l~~~~~~~~~ 269 (483)
T KOG4341|consen 215 -CRKLKYLNLSWCPQISG-NGVQALQRGCKELEKLSLKGCLE--------------------L---ELEALLKAAAYCLE 269 (483)
T ss_pred -hhhHHHhhhccCchhhc-CcchHHhccchhhhhhhhccccc--------------------c---cHHHHHHHhccChH
Confidence 67799999999976544 22334445555566666666632 1 22333333344555
Q ss_pred ccEEEccCC-CCChHHHHHHHHHHhhCCCccEEEccCCC-CChHHHHHHHHHHhcCCCCCEEEccCCC-CCHhhHHHHHh
Q 000665 264 VKSLDMTGV-RLKSRWAKEFRWVLQQNQSLKEVILSKTC-LKDKGVVYVAAGLFKNRSLESLYLHGNW-FSGVGVEHLLC 340 (1363)
Q Consensus 264 L~~LdLs~N-~L~~~~~~~L~~~L~~n~~L~~LdLs~N~-L~d~g~~~L~~~L~~~~~L~~LdLs~N~-l~~~g~~~L~~ 340 (1363)
+..+|+..| .+++.++..++.. +..|+.|+.+++. +++.....+. ..+.+|+.|-++.++ +++.|...++
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~---c~~lq~l~~s~~t~~~d~~l~aLg---~~~~~L~~l~l~~c~~fsd~~ft~l~- 342 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACG---CHALQVLCYSSCTDITDEVLWALG---QHCHNLQVLELSGCQQFSDRGFTMLG- 342 (483)
T ss_pred hhccchhhhccccchHHHHHhhh---hhHhhhhcccCCCCCchHHHHHHh---cCCCceEEEeccccchhhhhhhhhhh-
Confidence 667776554 7888886665544 3568888888754 5655444332 567899999998775 8888888876
Q ss_pred hhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEe
Q 000665 341 PLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSL 420 (1363)
Q Consensus 341 ~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~L 420 (1363)
.....|+.+++.+ +..+..+ .|+..-..++.|+.|.|+++..++|+|+..+..+-.....|..|.|
T Consensus 343 ----------rn~~~Le~l~~e~--~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL 408 (483)
T KOG4341|consen 343 ----------RNCPHLERLDLEE--CGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLEL 408 (483)
T ss_pred ----------cCChhhhhhcccc--cceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeee
Confidence 3567899998873 4444443 4555556788899999999989999999998888777889999999
Q ss_pred ecCCCCCChhHHHHHHHHHhcCCCccEEeccCCC
Q 000665 421 QGCKGVRGELVQQAIMETLQVNPWIEDIDLERTP 454 (1363)
Q Consensus 421 s~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~ 454 (1363)
++|. .+++ ...+.+..|++|+.++|-++.
T Consensus 409 ~n~p-~i~d----~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 409 DNCP-LITD----ATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cCCC-CchH----HHHHHHhhCcccceeeeechh
Confidence 9887 3444 456677788999998888765
No 166
>PRK15494 era GTPase Era; Provisional
Probab=99.21 E-value=9.9e-11 Score=138.08 Aligned_cols=155 Identities=22% Similarity=0.226 Sum_probs=96.4
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchh-hhhc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHE-FYSL 568 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~-y~~t 568 (1363)
...++.++|.++||||||+++|.+...... .|.. ..|.+.....+..++..+.+||++|+.. |+..
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~iv-----------s~k~--~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l 117 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIV-----------TPKV--QTTRSIITGIITLKDTQVILYDTPGIFEPKGSL 117 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeec-----------cCCC--CCccCcEEEEEEeCCeEEEEEECCCcCCCcccH
Confidence 457999999999999999999997621111 1111 2243333333444566899999999843 4433
Q ss_pred cccc-------cccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCC
Q 000665 569 HDLM-------FPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKIN 641 (1363)
Q Consensus 569 h~~F-------lt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~ 641 (1363)
.+.+ +. ...+.++|+|.++ ++++. ...|+..++.. .. |+++|+||+|+..
T Consensus 118 ~~~~~r~~~~~l~---~aDvil~VvD~~~--------s~~~~---~~~il~~l~~~--------~~-p~IlViNKiDl~~ 174 (339)
T PRK15494 118 EKAMVRCAWSSLH---SADLVLLIIDSLK--------SFDDI---THNILDKLRSL--------NI-VPIFLLNKIDIES 174 (339)
T ss_pred HHHHHHHHHHHhh---hCCEEEEEEECCC--------CCCHH---HHHHHHHHHhc--------CC-CEEEEEEhhcCcc
Confidence 3322 34 5778899999753 22222 24577776542 12 3578999999853
Q ss_pred CCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 642 QPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 642 ~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
. ... +..+.++..+. ...+|++||+++.|++++++.|.+
T Consensus 175 ~---~~~---~~~~~l~~~~~-----~~~i~~iSAktg~gv~eL~~~L~~ 213 (339)
T PRK15494 175 K---YLN---DIKAFLTENHP-----DSLLFPISALSGKNIDGLLEYITS 213 (339)
T ss_pred c---cHH---HHHHHHHhcCC-----CcEEEEEeccCccCHHHHHHHHHH
Confidence 2 111 22233322211 135799999999999999887764
No 167
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.19 E-value=2.5e-10 Score=119.34 Aligned_cols=148 Identities=19% Similarity=0.219 Sum_probs=92.4
Q ss_pred ecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhc------
Q 000665 496 FCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSL------ 568 (1363)
Q Consensus 496 ~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~t------ 568 (1363)
++|.+|+|||||++++.+. +.....| ..|.......+.-....+.+||++|++.|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~---------------~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 65 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWP---------------GVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKV 65 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCC---------------CcccccceEEEeeCCeEEEEEECCCccccCCCChhHHH
Confidence 5899999999999999876 2111111 11222222223323468999999999988753
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhH
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQ 648 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~ 648 (1363)
...|+... ...++++|+|+++ ++. ...|...+... ..|+++|+||+|+........
T Consensus 66 ~~~~~~~~-~~d~vi~v~d~~~---------~~~----~~~~~~~~~~~---------~~~~iiv~NK~Dl~~~~~~~~- 121 (158)
T cd01879 66 ARDFLLGE-KPDLIVNVVDATN---------LER----NLYLTLQLLEL---------GLPVVVALNMIDEAEKRGIKI- 121 (158)
T ss_pred HHHHhcCC-CCcEEEEEeeCCc---------chh----HHHHHHHHHHc---------CCCEEEEEehhhhcccccchh-
Confidence 34444322 5788999999863 111 12454444331 136999999999964322111
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 649 LTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 649 ~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
..+.+...+. .+++.+|+.++.|++++++.|...
T Consensus 122 ----~~~~~~~~~~------~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 122 ----DLDKLSELLG------VPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ----hHHHHHHhhC------CCeEEEEccCCCCHHHHHHHHHHH
Confidence 1223333332 257899999999999999888664
No 168
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.19 E-value=1.2e-11 Score=168.21 Aligned_cols=126 Identities=15% Similarity=0.198 Sum_probs=72.7
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCC-CCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCC
Q 000665 290 QSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNW-FSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKI 368 (1363)
Q Consensus 290 ~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~-l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i 368 (1363)
++|+.|+|++|.... .++..+..+++|+.|+|++|. ++..+ .. ...++|+.|+|++ ++.+
T Consensus 778 ~sL~~L~Ls~n~~l~----~lP~si~~L~~L~~L~Ls~C~~L~~LP-----~~---------~~L~sL~~L~Ls~-c~~L 838 (1153)
T PLN03210 778 PSLTRLFLSDIPSLV----ELPSSIQNLHKLEHLEIENCINLETLP-----TG---------INLESLESLDLSG-CSRL 838 (1153)
T ss_pred ccchheeCCCCCCcc----ccChhhhCCCCCCEEECCCCCCcCeeC-----CC---------CCccccCEEECCC-CCcc
Confidence 467777777765321 245556677777777777653 33211 10 1235677777774 3333
Q ss_pred CHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEE
Q 000665 369 GRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDI 448 (1363)
Q Consensus 369 ~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~L 448 (1363)
... . ...++|+.|+|++| .+. .++..+..+++|+.|+|++|.. +..++..+..+++|+.|
T Consensus 839 ~~~-----p---~~~~nL~~L~Ls~n-~i~-----~iP~si~~l~~L~~L~L~~C~~------L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 839 RTF-----P---DISTNISDLNLSRT-GIE-----EVPWWIEKFSNLSFLDMNGCNN------LQRVSLNISKLKHLETV 898 (1153)
T ss_pred ccc-----c---ccccccCEeECCCC-CCc-----cChHHHhcCCCCCEEECCCCCC------cCccCcccccccCCCee
Confidence 321 1 11245777777777 343 4666777777888888877652 12244445556677777
Q ss_pred eccCCC
Q 000665 449 DLERTP 454 (1363)
Q Consensus 449 dL~~N~ 454 (1363)
++++|+
T Consensus 899 ~l~~C~ 904 (1153)
T PLN03210 899 DFSDCG 904 (1153)
T ss_pred ecCCCc
Confidence 777764
No 169
>PRK04213 GTP-binding protein; Provisional
Probab=99.18 E-value=2.6e-10 Score=124.91 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=91.3
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC--------
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG-------- 561 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG-------- 561 (1363)
..+++++|.+|||||||+++|.+. +.....| +...+....... .+.+||++|
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~-----------------~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~ 69 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP-----------------GVTRKPNHYDWG--DFILTDLPGFGFMSGVP 69 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCC-----------------ceeeCceEEeec--ceEEEeCCccccccccC
Confidence 469999999999999999999875 2211111 111111112112 689999999
Q ss_pred ---chhhhhccccccc-cCCCCeEEEEEEeCCCCCC--CCCCCC-hhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEE
Q 000665 562 ---QHEFYSLHDLMFP-GHGSASCFLIISSLFRKPT--NREPKT-PEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVL 634 (1363)
Q Consensus 562 ---Qe~y~~th~~Flt-~~~~~alyLLV~dl~~~~~--~~~~~~-~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVg 634 (1363)
|+.|......|+. ......+.++|+|.+.... .++... .......+..+ +.. . ..|+++|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~---~------~~p~iiv~ 137 (201)
T PRK04213 70 KEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDF---LRE---L------GIPPIVAV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHH---HHH---c------CCCeEEEE
Confidence 7888877666664 1112356777888753111 000000 00011112222 221 0 23699999
Q ss_pred eccCCCCCCchhhHHHHHHHHHHHHHhcc---ccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 635 THYDKINQPSQDMQLTVSSIQRLKDKFQG---FVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 635 Th~D~~~~~~~~~~~~~~~~~~lr~~f~~---~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
||+|+.... . +..+++.+.+.- +..+...++.+||+++ |++++++.|.+.
T Consensus 138 NK~Dl~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 138 NKMDKIKNR---D----EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred ECccccCcH---H----HHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHh
Confidence 999986422 1 122333333321 1111125799999999 999999988764
No 170
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.18 E-value=2e-10 Score=124.87 Aligned_cols=169 Identities=12% Similarity=0.180 Sum_probs=90.6
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE--EEe------------cCceEEEEE
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK--TLK------------DEDTRISIW 557 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~--~~~------------~~~~~l~iW 557 (1363)
+++.++|+.++|||||+++|........ +.. .... .....|.++... .+. .+...+.+|
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~---~~~--~~~e--~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 73 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAA---FDK--NPQS--QERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLV 73 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhh---hcc--CHHH--HHcCCeeeecceEEEecccccccccccccccCceEEEE
Confidence 3789999999999999999986310000 000 0000 000112222221 121 237899999
Q ss_pred ecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEecc
Q 000665 558 NLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHY 637 (1363)
Q Consensus 558 DfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~ 637 (1363)
|++||..|... ++.......+.++|+|+++.. .... ...|. .... . ..|+++|+||+
T Consensus 74 DtpG~~~~~~~---~~~~~~~~d~vi~VvD~~~~~------~~~~----~~~~~-~~~~-~--------~~~~iiv~NK~ 130 (192)
T cd01889 74 DCPGHASLIRT---IIGGAQIIDLMLLVVDATKGI------QTQT----AECLV-IGEI-L--------CKKLIVVLNKI 130 (192)
T ss_pred ECCCcHHHHHH---HHHHHhhCCEEEEEEECCCCc------cHHH----HHHHH-HHHH-c--------CCCEEEEEECc
Confidence 99999765433 333111456889999987411 1111 12222 1111 0 12699999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 638 DKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 638 D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
|+.... .......+..+.+...+...-...-+++.+||+++.|+++|++.|..
T Consensus 131 Dl~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~ 183 (192)
T cd01889 131 DLIPEE-ERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNN 183 (192)
T ss_pred ccCCHH-HHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHh
Confidence 996322 11111112223333222111011236899999999999999988865
No 171
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.17 E-value=3.2e-11 Score=154.14 Aligned_cols=251 Identities=14% Similarity=0.160 Sum_probs=154.4
Q ss_pred CccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHHHH
Q 000665 103 NVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMI 182 (1363)
Q Consensus 103 ~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L 182 (1363)
+.+.|+|+++.++.... .+ .++|+.|+|++|.|+. +...+. ++|+.|+|++|+|+. +...+
T Consensus 179 ~~~~L~L~~~~LtsLP~-----~I--p~~L~~L~Ls~N~Lts-----LP~~l~--~nL~~L~Ls~N~Lts-----LP~~l 239 (754)
T PRK15370 179 NKTELRLKILGLTTIPA-----CI--PEQITTLILDNNELKS-----LPENLQ--GNIKTLYANSNQLTS-----IPATL 239 (754)
T ss_pred CceEEEeCCCCcCcCCc-----cc--ccCCcEEEecCCCCCc-----CChhhc--cCCCEEECCCCcccc-----CChhh
Confidence 45777887777764321 11 2467788888887763 222221 368888888887764 22222
Q ss_pred hcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCC
Q 000665 183 EANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNT 262 (1363)
Q Consensus 183 ~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~ 262 (1363)
. .+|+.|+|++|++..- +..+ ..+|+.|++++|. +..++..+. .
T Consensus 240 ~--~~L~~L~Ls~N~L~~L----P~~l--~s~L~~L~Ls~N~--------------------------L~~LP~~l~--~ 283 (754)
T PRK15370 240 P--DTIQEMELSINRITEL----PERL--PSALQSLDLFHNK--------------------------ISCLPENLP--E 283 (754)
T ss_pred h--ccccEEECcCCccCcC----ChhH--hCCCCEEECcCCc--------------------------cCccccccC--C
Confidence 2 3577888887765431 1111 1367777777762 112222222 4
Q ss_pred cccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhh
Q 000665 263 TVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPL 342 (1363)
Q Consensus 263 ~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L 342 (1363)
+|+.|+|++|+|+... ..+ ..+|+.|+|++|.++. ++..+ .++|+.|++++|.++.... .+
T Consensus 284 sL~~L~Ls~N~Lt~LP-----~~l--p~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~LP~-----~l 344 (754)
T PRK15370 284 ELRYLSVYDNSIRTLP-----AHL--PSGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTSLPA-----SL 344 (754)
T ss_pred CCcEEECCCCccccCc-----ccc--hhhHHHHHhcCCcccc-----CCccc--cccceeccccCCccccCCh-----hh
Confidence 7899999999887521 111 1368889999998874 22222 2679999999998875431 11
Q ss_pred hhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeec
Q 000665 343 SRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQG 422 (1363)
Q Consensus 343 ~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~ 422 (1363)
..+|+.|+|+ +|+|+... ..+ .++|+.|+|++| .+. .++..+. .+|+.|++++
T Consensus 345 ----------~~sL~~L~Ls--~N~L~~LP-----~~l--p~~L~~LdLs~N-~Lt-----~LP~~l~--~sL~~LdLs~ 397 (754)
T PRK15370 345 ----------PPELQVLDVS--KNQITVLP-----ETL--PPTITTLDVSRN-ALT-----NLPENLP--AALQIMQASR 397 (754)
T ss_pred ----------cCcccEEECC--CCCCCcCC-----hhh--cCCcCEEECCCC-cCC-----CCCHhHH--HHHHHHhhcc
Confidence 2578999998 57777432 122 247999999999 454 3444443 3688899999
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCC
Q 000665 423 CKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKN 457 (1363)
Q Consensus 423 N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~ 457 (1363)
|+...-+ ..++..+...+.+..|+|.+|+|..
T Consensus 398 N~L~~LP---~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 398 NNLVRLP---ESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCcccCc---hhHHHHhhcCCCccEEEeeCCCccH
Confidence 9732111 2344444556889999999999884
No 172
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.16 E-value=2.6e-10 Score=125.25 Aligned_cols=151 Identities=16% Similarity=0.190 Sum_probs=92.1
Q ss_pred ceeEEecCccccchHHHHHHHhhcC-CCCCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCchh----
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNF-SSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQHE---- 564 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~-~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQe~---- 564 (1363)
..++.++|.+|||||||++++.+.. .....+ ..|......... ++...+.+||++|+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~---------------~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 105 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQL---------------FATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH 105 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCcc---------------ceeccceeEEEEecCCceEEEeCCCccccCCCH
Confidence 3599999999999999999999762 111000 011111122222 2334899999999832
Q ss_pred -----hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCC
Q 000665 565 -----FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDK 639 (1363)
Q Consensus 565 -----y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~ 639 (1363)
|..+... +. ...++++|+|+++. .. ......|.+.+..... ...||++|+||+|+
T Consensus 106 ~~~~~~~~~~~~-~~---~~d~ii~v~D~~~~------~~----~~~~~~~~~~l~~~~~------~~~~viiV~NK~Dl 165 (204)
T cd01878 106 QLVEAFRSTLEE-VA---EADLLLHVVDASDP------DY----EEQIETVEKVLKELGA------EDIPMILVLNKIDL 165 (204)
T ss_pred HHHHHHHHHHHH-Hh---cCCeEEEEEECCCC------Ch----hhHHHHHHHHHHHcCc------CCCCEEEEEEcccc
Confidence 3222221 33 56789999999752 11 1334566666654211 12479999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 640 INQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 640 ~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...... . ..+.. ...+++.+||+++.|++++++.|.+
T Consensus 166 ~~~~~~---------~---~~~~~---~~~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 166 LDDEEL---------E---ERLEA---GRPDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred CChHHH---------H---HHhhc---CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 642211 0 11111 1235789999999999999988765
No 173
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.16 E-value=5.4e-10 Score=114.36 Aligned_cols=149 Identities=18% Similarity=0.294 Sum_probs=96.2
Q ss_pred ecCccccchHHHHHHHhhcCC--CCCCcceeecccccccccCccCCcceEEEEEe----cCceEEEEEecCCchhhhhcc
Q 000665 496 FCGQEYAGKTTLCNSISQNFS--SSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK----DEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 496 ~vG~~~~GKTSL~~~L~~~~~--~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~----~~~~~l~iWDfaGQe~y~~th 569 (1363)
++|.+|+|||||++++.+... ... ..|. ++...+. .....+.+||++|+..+...+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~-----------------~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 62 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEY-----------------ETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR 62 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccc-----------------ccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHH
Confidence 589999999999999997622 111 1122 3333322 347899999999999999988
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHH-HHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWL-RFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQ 648 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL-~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~ 648 (1363)
..++. ...++++|+|+++ +... ..+..|. ...... .....|+++|+||.|..........
T Consensus 63 ~~~~~---~~~~~i~v~d~~~---------~~~~-~~~~~~~~~~~~~~------~~~~~~~ivv~nk~D~~~~~~~~~~ 123 (157)
T cd00882 63 RLYYR---GADGIILVYDVTD---------RESF-ENVKEWLLLILINK------EGENIPIILVGNKIDLPEERVVSEE 123 (157)
T ss_pred HHHhc---CCCEEEEEEECcC---------HHHH-HHHHHHHHHHHHhh------ccCCCcEEEEEeccccccccchHHH
Confidence 88888 8889999999974 2223 4445552 222221 1224479999999999653322111
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 649 LTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 649 ~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
. ........ ...+++.+|+.++.+++++++.|.
T Consensus 124 ~----~~~~~~~~-----~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 124 E----LAEQLAKE-----LGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred H----HHHHHHhh-----cCCcEEEEecCCCCChHHHHHHHh
Confidence 0 01111111 124679999999999999988764
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.15 E-value=7.5e-10 Score=135.90 Aligned_cols=172 Identities=15% Similarity=0.166 Sum_probs=106.7
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
..+|+.++|.+++|||||+++|.+..... ..+.+++ |.......+..+...+.+||++|+..+...+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~-----------~~~~~gt--t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~ 237 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVI-----------VSDIAGT--TRDSIDIPFERNGKKYLLIDTAGIRRKGKVT 237 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeee-----------cCCCCCc--eECcEeEEEEECCcEEEEEECCCccccccch
Confidence 34799999999999999999998751100 0011111 1111112222344589999999975543322
Q ss_pred ---------c--cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccC
Q 000665 570 ---------D--LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYD 638 (1363)
Q Consensus 570 ---------~--~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D 638 (1363)
+ ..+. ...++++|+|+++. .+.. -..++..+... ..|+++|+||+|
T Consensus 238 ~~~e~~~~~~~~~~~~---~ad~~ilV~D~~~~------~~~~-----~~~~~~~~~~~---------~~~iiiv~NK~D 294 (429)
T TIGR03594 238 EGVEKYSVLRTLKAIE---RADVVLLVLDATEG------ITEQ-----DLRIAGLILEA---------GKALVIVVNKWD 294 (429)
T ss_pred hhHHHHHHHHHHHHHH---hCCEEEEEEECCCC------ccHH-----HHHHHHHHHHc---------CCcEEEEEECcc
Confidence 1 1345 68899999999741 1111 12344444331 126999999999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHhhcCch
Q 000665 639 KINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRTILQRVPRV 703 (1363)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~i~~~~P~~ 703 (1363)
+.. ... ......+.++..+... . ..+++++||++|.|++++++.+.+..+....++|..
T Consensus 295 l~~-~~~---~~~~~~~~~~~~~~~~-~-~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~ 353 (429)
T TIGR03594 295 LVK-DEK---TREEFKKELRRKLPFL-D-FAPIVFISALTGQGVDKLLDAIDEVYENANRRISTS 353 (429)
T ss_pred cCC-CHH---HHHHHHHHHHHhcccC-C-CCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHH
Confidence 962 212 2223445555554322 1 236899999999999999999988777776677765
No 175
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.15 E-value=4e-10 Score=121.49 Aligned_cols=171 Identities=15% Similarity=0.147 Sum_probs=101.7
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceee-cccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQ-VRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~-~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
++.++|.+|+|||||+++|.+. ......++... ...+.........|..............+.+||++|+..|.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4789999999999999999877 22211111100 000000000001111112223334578999999999999988877
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. ...+.++|+|.++. .+ .....|+..+.. ...|+++|+||+|+.... ..+
T Consensus 81 ~~~~---~~d~~i~v~d~~~~------~~-----~~~~~~~~~~~~---------~~~~i~iv~nK~D~~~~~--~~~-- 133 (189)
T cd00881 81 RGLS---VSDGAILVVDANEG------VQ-----PQTREHLRIARE---------GGLPIIVAINKIDRVGEE--DLE-- 133 (189)
T ss_pred HHHH---hcCEEEEEEECCCC------Cc-----HHHHHHHHHHHH---------CCCCeEEEEECCCCcchh--cHH--
Confidence 7788 78889999998741 11 122344444433 123699999999997422 211
Q ss_pred HHHHHHHHHHhcccc-----------CCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFV-----------DFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~-----------~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...+.+++.+.... .....++++|++++.|++++++.|.+
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~ 184 (189)
T cd00881 134 -EVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred -HHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence 12233333332211 11246899999999999999887765
No 176
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=6.2e-11 Score=151.55 Aligned_cols=258 Identities=14% Similarity=0.159 Sum_probs=150.0
Q ss_pred HHHHHHhhhhCCCccEEEEecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCC
Q 000665 63 LTLLVTAEKAHTSLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGI 142 (1363)
Q Consensus 63 l~~L~~~l~~~~~L~~L~Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I 142 (1363)
+..+.+|+. .....|+++++.++. +...+ .++|+.|+|++|+|+..... + ..+|+.|+|++|.+
T Consensus 169 ~~r~~~Cl~--~~~~~L~L~~~~Lts-----LP~~I--p~~L~~L~Ls~N~LtsLP~~-----l--~~nL~~L~Ls~N~L 232 (754)
T PRK15370 169 VQRMRDCLK--NNKTELRLKILGLTT-----IPACI--PEQITTLILDNNELKSLPEN-----L--QGNIKTLYANSNQL 232 (754)
T ss_pred HHHHHhhcc--cCceEEEeCCCCcCc-----CCccc--ccCCcEEEecCCCCCcCChh-----h--ccCCCEEECCCCcc
Confidence 334445554 345789998886653 22222 24789999999999864321 1 24899999999998
Q ss_pred CHHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccC
Q 000665 143 KNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSG 222 (1363)
Q Consensus 143 ~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~ 222 (1363)
+. +...+ .++|+.|+|++|.+.. ++..+. .+|+.|+|++|++.. ++..+ ..+|+.|++++
T Consensus 233 ts-----LP~~l--~~~L~~L~Ls~N~L~~-----LP~~l~--s~L~~L~Ls~N~L~~----LP~~l--~~sL~~L~Ls~ 292 (754)
T PRK15370 233 TS-----IPATL--PDTIQEMELSINRITE-----LPERLP--SALQSLDLFHNKISC----LPENL--PEELRYLSVYD 292 (754)
T ss_pred cc-----CChhh--hccccEEECcCCccCc-----CChhHh--CCCCEEECcCCccCc----ccccc--CCCCcEEECCC
Confidence 73 22222 2469999999999975 222222 479999999987643 22212 24799999999
Q ss_pred CCCcchhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCC
Q 000665 223 ENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCL 302 (1363)
Q Consensus 223 n~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L 302 (1363)
|... . ++..+ .++|+.|+|++|.++... ..+ .++|+.|++++|.+
T Consensus 293 N~Lt----------------~----------LP~~l--p~sL~~L~Ls~N~Lt~LP-----~~l--~~sL~~L~Ls~N~L 337 (754)
T PRK15370 293 NSIR----------------T----------LPAHL--PSGITHLNVQSNSLTALP-----ETL--PPGLKTLEAGENAL 337 (754)
T ss_pred Cccc----------------c----------Ccccc--hhhHHHHHhcCCccccCC-----ccc--cccceeccccCCcc
Confidence 8321 0 11111 134666777777765421 111 24677777777776
Q ss_pred ChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHcccc
Q 000665 303 KDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTT 382 (1363)
Q Consensus 303 ~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~ 382 (1363)
+. ++..+ .++|+.|+|++|+|+.... . + ..+|+.|+|+ +|+++.... .+.
T Consensus 338 t~-----LP~~l--~~sL~~L~Ls~N~L~~LP~-~----l----------p~~L~~LdLs--~N~Lt~LP~-----~l~- 387 (754)
T PRK15370 338 TS-----LPASL--PPELQVLDVSKNQITVLPE-T----L----------PPTITTLDVS--RNALTNLPE-----NLP- 387 (754)
T ss_pred cc-----CChhh--cCcccEEECCCCCCCcCCh-h----h----------cCCcCEEECC--CCcCCCCCH-----hHH-
Confidence 63 22222 2567777777777764221 1 1 1357777776 466654321 111
Q ss_pred CcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeecCC
Q 000665 383 NETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCK 424 (1363)
Q Consensus 383 ~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~ 424 (1363)
.+|+.|++++| .+..- -..++......+.+..|+|.+|.
T Consensus 388 -~sL~~LdLs~N-~L~~L-P~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 -AALQIMQASRN-NLVRL-PESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -HHHHHHhhccC-CcccC-chhHHHHhhcCCCccEEEeeCCC
Confidence 24667777777 34320 01233333334667777777776
No 177
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.14 E-value=9.3e-10 Score=128.68 Aligned_cols=186 Identities=19% Similarity=0.275 Sum_probs=123.5
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCc-------
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQ------- 562 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQ------- 562 (1363)
...|+.++|.++||||||+++|.++ .|.++.|.+++.+. --...|..+.-++.+.||||-
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge-----------eR~Iv~~~aGTTRD--~I~~~~e~~~~~~~liDTAGiRrk~ki~ 243 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE-----------ERVIVSDIAGTTRD--SIDIEFERDGRKYVLIDTAGIRRKGKIT 243 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC-----------ceEEecCCCCcccc--ceeeeEEECCeEEEEEECCCCCcccccc
Confidence 4589999999999999999999976 34444454444332 122335566778999999992
Q ss_pred --hhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 563 --HEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 563 --e~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
-++|+.-+..-. .....+++||.|+++. .. ++-..-...|.... . +++||.||||..
T Consensus 244 e~~E~~Sv~rt~~a-I~~a~vvllviDa~~~--------~~---~qD~~ia~~i~~~g--------~-~~vIvvNKWDl~ 302 (444)
T COG1160 244 ESVEKYSVARTLKA-IERADVVLLVIDATEG--------IS---EQDLRIAGLIEEAG--------R-GIVIVVNKWDLV 302 (444)
T ss_pred cceEEEeehhhHhH-HhhcCEEEEEEECCCC--------ch---HHHHHHHHHHHHcC--------C-CeEEEEEccccC
Confidence 244444433222 2268899999999851 22 22333344444421 1 389999999997
Q ss_pred CCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhh
Q 000665 641 NQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRTILQRVPRVYQLCNDLIQILSDWRS 719 (1363)
Q Consensus 641 ~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~i~~~~P~~~~l~~~l~~~l~~~r~ 719 (1363)
.......+ ...++++.+|+ ++++ .+++++||.++.++.++++.+....+....+++.+ .+.+.++.+..
T Consensus 303 ~~~~~~~~---~~k~~i~~~l~-~l~~-a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts-----~LN~~l~~a~~ 371 (444)
T COG1160 303 EEDEATME---EFKKKLRRKLP-FLDF-APIVFISALTGQGLDKLFEAIKEIYECATRRISTS-----LLNRVLEDAVA 371 (444)
T ss_pred CchhhHHH---HHHHHHHHHhc-cccC-CeEEEEEecCCCChHHHHHHHHHHHHHhccccCHH-----HHHHHHHHHHH
Confidence 64322222 44566666653 3333 46788999999999999999999888888888888 45555554443
No 178
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.13 E-value=2.3e-10 Score=119.23 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=89.7
Q ss_pred ecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhh--------
Q 000665 496 FCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYS-------- 567 (1363)
Q Consensus 496 ~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~-------- 567 (1363)
++|.+|+|||||+++|.+.... ... +. ...|..........++..+.+||++|+..+..
T Consensus 2 l~G~~~~GKssl~~~l~~~~~~----~~~-------~~--~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~ 68 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDA----IVE-------DT--PGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIRE 68 (157)
T ss_pred ccCCCCCCHHHHHHHHhCCcEE----eec-------CC--CCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHH
Confidence 6899999999999999865210 000 00 01122223333334567899999999988654
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
....++. ...++++|+|..+. .......+..|+... ..|+++|+||+|+......
T Consensus 69 ~~~~~~~---~~d~ii~v~d~~~~--------~~~~~~~~~~~~~~~------------~~piiiv~nK~D~~~~~~~-- 123 (157)
T cd01894 69 QAELAIE---EADVILFVVDGREG--------LTPADEEIAKYLRKS------------KKPVILVVNKVDNIKEEDE-- 123 (157)
T ss_pred HHHHHHH---hCCEEEEEEecccc--------CCccHHHHHHHHHhc------------CCCEEEEEECcccCChHHH--
Confidence 2223455 67899999998641 111222344454421 1379999999999642111
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+.+. .+ .. ..++++|++++.|++++++.|.+
T Consensus 124 ------~~~~~-~~----~~-~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 124 ------AAEFY-SL----GF-GEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred ------HHHHH-hc----CC-CCeEEEecccCCCHHHHHHHHHh
Confidence 11111 11 11 25689999999999999998865
No 179
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.12 E-value=6.4e-10 Score=119.52 Aligned_cols=153 Identities=14% Similarity=0.239 Sum_probs=88.7
Q ss_pred CCceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCc-----
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQ----- 562 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQ----- 562 (1363)
....+++++|.+|+|||||+++|.+. +.....++. ..|..+....+. ..+.+||++|.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~-------------~~t~~~~~~~~~---~~~~liDtpG~~~~~~ 79 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTP-------------GRTQLINFFEVN---DGFRLVDLPGYGYAKV 79 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC-------------CcceEEEEEEeC---CcEEEEeCCCCccccC
Confidence 34569999999999999999999976 222111111 124444433332 26999999994
Q ss_pred -----hhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEecc
Q 000665 563 -----HEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHY 637 (1363)
Q Consensus 563 -----e~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~ 637 (1363)
+.|...-..|++......++++|+|.++. .......+ ++.+... ..||++|+||+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~--------~~~~~~~~---~~~~~~~---------~~pviiv~nK~ 139 (179)
T TIGR03598 80 SKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHP--------LKELDLEM---LEWLRER---------GIPVLIVLTKA 139 (179)
T ss_pred ChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCC--------CCHHHHHH---HHHHHHc---------CCCEEEEEECc
Confidence 34444444455511123578889998641 11221222 2333221 23699999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChh
Q 000665 638 DKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVT 683 (1363)
Q Consensus 638 D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~ 683 (1363)
|+... ...+ ...+.+++.+... .....+|.+|++++.|++
T Consensus 140 D~~~~--~~~~---~~~~~i~~~l~~~-~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 140 DKLKK--SELN---KQLKKIKKALKKD-ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred ccCCH--HHHH---HHHHHHHHHHhhc-cCCCceEEEECCCCCCCC
Confidence 99632 1111 2344445444432 112368999999999874
No 180
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.10 E-value=7.7e-10 Score=130.74 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=94.4
Q ss_pred eeEEecCccccchHHHHHHHhhcC-CCCCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCc-------
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNF-SSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQ------- 562 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~-~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQ------- 562 (1363)
.++.++|.++||||||+++|.+.. .....+ -.|.......+. .+...+.+|||+|+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~---------------~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~ 254 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQL---------------FATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHE 254 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCC---------------ccccCCEEEEEEeCCCceEEEEecCcccccCCHH
Confidence 599999999999999999999761 111000 012222222222 24568999999998
Q ss_pred --hhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 563 --HEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 563 --e~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
+.|..+... +. ..++.++|+|+++ +.. .+.+..|...+.... ....|+++|+||+|+.
T Consensus 255 lie~f~~tle~-~~---~ADlil~VvD~s~------~~~----~~~~~~~~~~L~~l~------~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 255 LVAAFRATLEE-VR---EADLLLHVVDASD------PDR----EEQIEAVEKVLEELG------AEDIPQLLVYNKIDLL 314 (351)
T ss_pred HHHHHHHHHHH-HH---hCCEEEEEEECCC------Cch----HHHHHHHHHHHHHhc------cCCCCEEEEEEeecCC
Confidence 456666654 45 6889999999975 111 233445555554311 1123699999999996
Q ss_pred CCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 641 NQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 641 ~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.. .. +..+... ...++.+||+++.|+++|++.|.+
T Consensus 315 ~~--~~-------v~~~~~~-------~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 315 DE--PR-------IERLEEG-------YPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred Ch--Hh-------HHHHHhC-------CCCEEEEEccCCCCHHHHHHHHHh
Confidence 32 11 1111111 124688999999999999988764
No 181
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.10 E-value=4.6e-10 Score=138.70 Aligned_cols=150 Identities=15% Similarity=0.077 Sum_probs=90.4
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchh-------
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHE------- 564 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~------- 564 (1363)
.++.++|.++||||||+++|.+.......++ ++ .|...........+..+.+||+||++.
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~-----------~g--vT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~ 105 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDV-----------PG--VTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQA 105 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCC-----------CC--CCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHH
Confidence 4899999999999999999997621110010 00 011111112223455799999999873
Q ss_pred -hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 565 -FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 565 -y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
|......++. ..+++|+|+|+++.. + .....+..|+. . . ..||++|+||+|+....
T Consensus 106 ~~~~~~~~~~~---~aD~il~VvD~~~~~------s--~~~~~i~~~l~---~-~--------~~piilV~NK~Dl~~~~ 162 (472)
T PRK03003 106 SVAEQAEVAMR---TADAVLFVVDATVGA------T--ATDEAVARVLR---R-S--------GKPVILAANKVDDERGE 162 (472)
T ss_pred HHHHHHHHHHH---hCCEEEEEEECCCCC------C--HHHHHHHHHHH---H-c--------CCCEEEEEECccCCccc
Confidence 3333344566 789999999998521 1 11233444443 2 1 23799999999985321
Q ss_pred chhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 644 SQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 644 ~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
. + ..+..... + ...+++||++|.|+++|++.|.+
T Consensus 163 -~--~----~~~~~~~g------~-~~~~~iSA~~g~gi~eL~~~i~~ 196 (472)
T PRK03003 163 -A--D----AAALWSLG------L-GEPHPVSALHGRGVGDLLDAVLA 196 (472)
T ss_pred -h--h----hHHHHhcC------C-CCeEEEEcCCCCCcHHHHHHHHh
Confidence 1 1 01111111 1 13478999999999999987764
No 182
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.09 E-value=1.8e-09 Score=118.52 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=71.5
Q ss_pred eEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEE
Q 000665 552 TRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVT 631 (1363)
Q Consensus 552 ~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vi 631 (1363)
.++.+||++||+.|....-..+. ...+.++|+|+++... ..+.. ..+..| .. ...+|++
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~---~~D~~llVvd~~~~~~-----~~~t~-~~l~~~----~~--------~~~~~ii 141 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAA---VMDGALLLIAANEPCP-----QPQTS-EHLAAL----EI--------MGLKHII 141 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhh---cCCEEEEEEECCCCCC-----CcchH-HHHHHH----HH--------cCCCcEE
Confidence 68999999999998776555455 6789999999974110 11111 222222 11 0124699
Q ss_pred EEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 632 VVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 632 lVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+|+||+|+... .. .....+.+++.+..+......++.+|++++.|+++|++.|.+
T Consensus 142 ivvNK~Dl~~~--~~---~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 142 IVQNKIDLVKE--EQ---ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred EEEEchhccCH--HH---HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999632 11 112334455444332112236799999999999999988764
No 183
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.09 E-value=7.2e-10 Score=139.33 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=104.4
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEE------Ee---cCceEEEEEecCCch
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT------LK---DEDTRISIWNLAGQH 563 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~------~~---~~~~~l~iWDfaGQe 563 (1363)
++.++|+.++|||||+.+|.......... ...+...+..+.+++.|+.+.. |. +..+.+++||++||+
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~---~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISER---EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccc---cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 68999999999999999998641100000 0111111111234566766552 32 345899999999999
Q ss_pred hhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 564 EFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 564 ~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
.|......++. ...+.++|+|+++.. +.+ ....|...+.. ..|+++|+||+|+....
T Consensus 82 dF~~~v~~~l~---~aD~aILVvDat~g~------~~q----t~~~~~~~~~~----------~ipiIiViNKiDl~~~~ 138 (595)
T TIGR01393 82 DFSYEVSRSLA---ACEGALLLVDAAQGI------EAQ----TLANVYLALEN----------DLEIIPVINKIDLPSAD 138 (595)
T ss_pred HHHHHHHHHHH---hCCEEEEEecCCCCC------CHh----HHHHHHHHHHc----------CCCEEEEEECcCCCccC
Confidence 99988888888 788999999997521 222 22344433322 12699999999985322
Q ss_pred chhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 644 SQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 644 ~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+ ...+++++.+... ...++++||+++.|+++|++.|.+
T Consensus 139 ---~~---~~~~el~~~lg~~---~~~vi~vSAktG~GI~~Lle~I~~ 177 (595)
T TIGR01393 139 ---PE---RVKKEIEEVIGLD---ASEAILASAKTGIGIEEILEAIVK 177 (595)
T ss_pred ---HH---HHHHHHHHHhCCC---cceEEEeeccCCCCHHHHHHHHHH
Confidence 11 1234444443211 124789999999999998887654
No 184
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.07 E-value=1.4e-09 Score=114.36 Aligned_cols=154 Identities=17% Similarity=0.341 Sum_probs=89.6
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcce--EEEEEecCceEEEEEecCCc-------
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGM--KIKTLKDEDTRISIWNLAGQ------- 562 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi--~i~~~~~~~~~l~iWDfaGQ------- 562 (1363)
++.++|.+|+|||||++++.+. +..... .|.|. .+..... ...+.+||++|.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~-----------------~~~~~t~~~~~~~~-~~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTS-----------------KTPGKTQLINFFNV-NDKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeec-----------------CCCCcceeEEEEEc-cCeEEEecCCCccccccCH
Confidence 4789999999999999999953 221111 12221 1111211 228999999993
Q ss_pred ---hhhhh-ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccC
Q 000665 563 ---HEFYS-LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYD 638 (1363)
Q Consensus 563 ---e~y~~-th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D 638 (1363)
+.|.. +++ |++.+..-.++++|+|.... .......+..|+.... .||++|+||+|
T Consensus 63 ~~~~~~~~~~~~-~~~~~~~~~~~~~v~d~~~~--------~~~~~~~~~~~l~~~~------------~~vi~v~nK~D 121 (170)
T cd01876 63 EVKEKWGKLIEE-YLENRENLKGVVLLIDSRHG--------PTEIDLEMLDWLEELG------------IPFLVVLTKAD 121 (170)
T ss_pred HHHHHHHHHHHH-HHHhChhhhEEEEEEEcCcC--------CCHhHHHHHHHHHHcC------------CCEEEEEEchh
Confidence 33433 344 44522123456778887531 1233345677876542 26999999999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 639 KINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+.... ..+.. ...++..... ......++++|++++.+++++++.|.+
T Consensus 122 ~~~~~--~~~~~---~~~~~~~l~~-~~~~~~~~~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 122 KLKKS--ELAKA---LKEIKKELKL-FEIDPPIILFSSLKGQGIDELRALIEK 168 (170)
T ss_pred cCChH--HHHHH---HHHHHHHHHh-ccCCCceEEEecCCCCCHHHHHHHHHH
Confidence 96422 11111 1122211110 112356889999999999999888765
No 185
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.07 E-value=3.1e-10 Score=129.28 Aligned_cols=314 Identities=15% Similarity=0.138 Sum_probs=226.9
Q ss_pred CCccEEEEecC-CCCHHHHHHHHHHhhcCCCccEEEEecC-CCCHHHHHHHHHHhHcCCCccEEEeecC-CCCHHHHHHH
Q 000665 74 TSLKHLEFHSV-EWEIEQMRILGLLLDCSSNVKQVVFRRN-KFDAECLAEISDVVRRNGVIKEVMFTES-GIKNAGASLL 150 (1363)
Q Consensus 74 ~~L~~L~Ls~~-~i~~~~~~~L~~~L~~~~~L~~L~Ls~N-~i~~~~~~~l~~~L~~~~~L~~L~Ls~n-~I~~~g~~~L 150 (1363)
..++.|.+.++ .+.+.. +......+++++.|++.++ +|++.....+++ .|+.|++|+|..| .|++...+.+
T Consensus 138 g~lk~LSlrG~r~v~~ss---lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~---~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSS---LRTFASNCPNIEHLALYGCKKITDSSLLSLAR---YCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred cccccccccccccCCcch---hhHHhhhCCchhhhhhhcceeccHHHHHHHHH---hcchhhhhhhcccchhHHHHHHHH
Confidence 57789999998 455544 4556678999999988765 678877776665 7899999999985 4888777777
Q ss_pred HHHhccCCCccEEEccCC-CCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchh
Q 000665 151 ASALKVNDTLEELQIWED-SIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSS 229 (1363)
Q Consensus 151 ~~~L~~~~sL~~L~Ls~N-~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~ 229 (1363)
++. +++|++|+++.+ .|.+.|++.+... +..++.+.+.+|. ....+.+...-..+..+.++++..++
T Consensus 212 a~g---C~kL~~lNlSwc~qi~~~gv~~~~rG---~~~l~~~~~kGC~-e~~le~l~~~~~~~~~i~~lnl~~c~----- 279 (483)
T KOG4341|consen 212 AEG---CRKLKYLNLSWCPQISGNGVQALQRG---CKELEKLSLKGCL-ELELEALLKAAAYCLEILKLNLQHCN----- 279 (483)
T ss_pred HHh---hhhHHHhhhccCchhhcCcchHHhcc---chhhhhhhhcccc-cccHHHHHHHhccChHhhccchhhhc-----
Confidence 654 678999999976 4888888877544 4447777777774 23344455555556666667665552
Q ss_pred HHHhhcCCCCcceeeccCchhHHHHHHHhcCCCcccEEEccCC-CCChHHHHHHHHHHhhCCCccEEEccCCC-CChHHH
Q 000665 230 KVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGV-RLKSRWAKEFRWVLQQNQSLKEVILSKTC-LKDKGV 307 (1363)
Q Consensus 230 ~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N-~L~~~~~~~L~~~L~~n~~L~~LdLs~N~-L~d~g~ 307 (1363)
.+++.++..++. .+..|+.|+.+++ .+++.....|+ ..+.+|+.|-|+.|+ +++.|.
T Consensus 280 ---------------~lTD~~~~~i~~---~c~~lq~l~~s~~t~~~d~~l~aLg---~~~~~L~~l~l~~c~~fsd~~f 338 (483)
T KOG4341|consen 280 ---------------QLTDEDLWLIAC---GCHALQVLCYSSCTDITDEVLWALG---QHCHNLQVLELSGCQQFSDRGF 338 (483)
T ss_pred ---------------cccchHHHHHhh---hhhHhhhhcccCCCCCchHHHHHHh---cCCCceEEEeccccchhhhhhh
Confidence 377777666553 3457889999886 56766555443 346899999999987 899888
Q ss_pred HHHHHHHhcCCCCCEEEccCCCCCHhh-HHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcce
Q 000665 308 VYVAAGLFKNRSLESLYLHGNWFSGVG-VEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETV 386 (1363)
Q Consensus 308 ~~L~~~L~~~~~L~~LdLs~N~l~~~g-~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L 386 (1363)
..++ .+++.|+.+++.....+..+ ...++ ..++.|+.|+|+. +-.|++.|...+...-+....|
T Consensus 339 t~l~---rn~~~Le~l~~e~~~~~~d~tL~sls-----------~~C~~lr~lslsh-ce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 339 TMLG---RNCPHLERLDLEECGLITDGTLASLS-----------RNCPRLRVLSLSH-CELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred hhhh---cCChhhhhhcccccceehhhhHhhhc-----------cCCchhccCChhh-hhhhhhhhhhhhhhcccccccc
Confidence 8776 46789999999998876666 33332 4678899999985 5678999999998888888899
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEe
Q 000665 387 TQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDID 449 (1363)
Q Consensus 387 ~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~Ld 449 (1363)
..|.|+++..+.+ ...+-+..+++|+.++|-+|+. ++.+++..+. ..+|+++..-
T Consensus 404 ~~lEL~n~p~i~d----~~Le~l~~c~~Leri~l~~~q~-vtk~~i~~~~---~~lp~i~v~a 458 (483)
T KOG4341|consen 404 EVLELDNCPLITD----ATLEHLSICRNLERIELIDCQD-VTKEAISRFA---THLPNIKVHA 458 (483)
T ss_pred ceeeecCCCCchH----HHHHHHhhCcccceeeeechhh-hhhhhhHHHH---hhCccceehh
Confidence 9999999965555 3445566789999999999884 3333333333 3356554443
No 186
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.06 E-value=2e-09 Score=123.46 Aligned_cols=152 Identities=18% Similarity=0.138 Sum_probs=92.4
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhh-hhcccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEF-YSLHDL 571 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y-~~th~~ 571 (1363)
++.++|.+|||||||+++|.+..... +.|.+++ |.......+..++..+.+||++|+... +...+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~-----------vs~~~~T--Tr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~ 68 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI-----------TSPKAQT--TRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRL 68 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee-----------cCCCCCc--ccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHH
Confidence 68999999999999999999762110 0111111 221111122345567999999997543 222221
Q ss_pred -------ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 572 -------MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 572 -------Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
++. ..++.++|+|+++. .... .+|+..+... ..|+++|+||+|+.. +
T Consensus 69 ~~~~~~~~l~---~aDvvl~VvD~~~~---------~~~~---~~i~~~l~~~---------~~p~ilV~NK~Dl~~-~- 122 (270)
T TIGR00436 69 MMKEARSAIG---GVDLILFVVDSDQW---------NGDG---EFVLTKLQNL---------KRPVVLTRNKLDNKF-K- 122 (270)
T ss_pred HHHHHHHHHh---hCCEEEEEEECCCC---------CchH---HHHHHHHHhc---------CCCEEEEEECeeCCC-H-
Confidence 234 67899999998741 1111 4556655431 236999999999963 1
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
. ......+.+...+ .+ ..+|++||++|.|+++|++.|.+
T Consensus 123 ~---~~~~~~~~~~~~~----~~-~~v~~iSA~~g~gi~~L~~~l~~ 161 (270)
T TIGR00436 123 D---KLLPLIDKYAILE----DF-KDIVPISALTGDNTSFLAAFIEV 161 (270)
T ss_pred H---HHHHHHHHHHhhc----CC-CceEEEecCCCCCHHHHHHHHHH
Confidence 1 1112223333222 11 26799999999999999887765
No 187
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.05 E-value=1.9e-09 Score=112.24 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=88.7
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhc---
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSL--- 568 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~t--- 568 (1363)
+++.++|.+|+|||||++++.+....... +.+ ..|.-............+.+||++|+..+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~-----------~~~--~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~ 68 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS-----------DIA--GTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEK 68 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc-----------CCC--CCccceEEEEEEeCCEEEEEEECCCcCCCcchHHH
Confidence 48999999999999999999865211000 000 01111111222334568999999997655321
Q ss_pred -----cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 569 -----HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 569 -----h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
...++. ...++++|+|+++.. +.... ..|-. ....||++|+||+|+....
T Consensus 69 ~~~~~~~~~~~---~~~~~v~v~d~~~~~------~~~~~----~~~~~------------~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 69 IGIERAREAIE---EADLVLFVIDASRGL------DEEDL----EILEL------------PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred HHHHHHHHHHh---hCCEEEEEEECCCCC------CHHHH----HHHHh------------hcCCCEEEEEEchhcCCcc
Confidence 112344 678999999998521 11111 11111 1123799999999996422
Q ss_pred chhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 644 SQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 644 ~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
.. . . ......++.+|++++.|++++++.|.+.
T Consensus 124 ~~-----------~--~----~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 124 EL-----------L--S----LLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred cc-----------c--c----ccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 11 0 1 1112467899999999999999888753
No 188
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.05 E-value=3.8e-09 Score=129.21 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=94.5
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc-
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH- 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th- 569 (1363)
.+|+.++|.++||||||+++|.+..... +.+.+ ..|..+....+.-++..+.+|||+|+..+...-
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~-----------v~~~~--gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie 281 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAI-----------VTDIA--GTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVE 281 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc-----------cCCCC--CcccccEEEEEEECCeEEEEEeCCCCCCCccHHH
Confidence 3699999999999999999999752100 00111 113332233333356789999999997654321
Q ss_pred -------ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 570 -------DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 570 -------~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
..++. ..+++++|+|+++. .+.+ ....|.. .. ..|+++|+||+|+...
T Consensus 282 ~~gi~~~~~~~~---~aD~il~VvD~s~~------~s~~----~~~~l~~-----~~-------~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 282 KIGIERSREAIE---EADLVLLVLDASEP------LTEE----DDEILEE-----LK-------DKPVIVVLNKADLTGE 336 (449)
T ss_pred HHHHHHHHHHHH---hCCEEEEEecCCCC------CChh----HHHHHHh-----cC-------CCCcEEEEEhhhcccc
Confidence 11345 68899999999751 1222 2344543 11 2369999999999632
Q ss_pred CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHH
Q 000665 643 PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRT 695 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~ 695 (1363)
... . .. ....++.+||+++.|+++|++.|.+....
T Consensus 337 ~~~---------~----~~-----~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 337 IDL---------E----EE-----NGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred chh---------h----hc-----cCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 110 0 11 11356889999999999999999875543
No 189
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.05 E-value=1.6e-09 Score=135.41 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=95.1
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
.++.++|..++|||||+++|.+. +.....+. ...+.|.....|.+ ...+.+||++||+.|..+..
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~G-------------IT~~ig~~~v~~~~-~~~i~~iDTPGhe~F~~~r~ 153 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGG-------------ITQHIGAYHVENED-GKMITFLDTPGHEAFTSMRA 153 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcccccCCc-------------eeecceEEEEEECC-CcEEEEEECCCCcchhhHHH
Confidence 58999999999999999999876 22211111 11233332223322 23899999999999998887
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.... ..+++++|+|+.+. ..+++. ..| ..... ...|+++|+||+|+.... .++.
T Consensus 154 rga~---~aDiaILVVda~dg------v~~qT~----e~i-~~~~~---------~~vPiIVviNKiDl~~~~---~e~v 207 (587)
T TIGR00487 154 RGAK---VTDIVVLVVAADDG------VMPQTI----EAI-SHAKA---------ANVPIIVAINKIDKPEAN---PDRV 207 (587)
T ss_pred hhhc---cCCEEEEEEECCCC------CCHhHH----HHH-HHHHH---------cCCCEEEEEECcccccCC---HHHH
Confidence 6666 67889999998641 111222 122 22211 122699999999996422 2222
Q ss_pred HHHHHHH---HHHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 651 VSSIQRL---KDKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 651 ~~~~~~l---r~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
...++.. ...|.. ...++++||++|.|+++|++.|.
T Consensus 208 ~~~L~~~g~~~~~~~~----~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 208 KQELSEYGLVPEDWGG----DTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred HHHHHHhhhhHHhcCC----CceEEEEECCCCCChHHHHHhhh
Confidence 1111111 111211 12578999999999999988764
No 190
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.04 E-value=2.7e-09 Score=112.95 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=94.4
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhh------
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEF------ 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y------ 565 (1363)
+++.++|.+|+|||||+++|.+...... . +.+ ..|.......+..+...+.+||++|+...
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~----~-------~~~--~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~ 69 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIV----S-------DIA--GTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEG 69 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceec----c-------CCC--CCccCceeeEEEECCeeEEEEECCCCccccchhcc
Confidence 6899999999999999999987521000 0 000 01111111223334556889999997432
Q ss_pred ---hhcccc--ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 566 ---YSLHDL--MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 566 ---~~th~~--Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
+.+.+. ++. ...++++|+|.++. .+... ..++..+... .+|+++|+||+|+.
T Consensus 70 ~e~~~~~~~~~~~~---~~d~vi~v~d~~~~------~~~~~-----~~~~~~~~~~---------~~~~iiv~nK~Dl~ 126 (174)
T cd01895 70 IEKYSVLRTLKAIE---RADVVLLVIDATEG------ITEQD-----LRIAGLILEE---------GKALVIVVNKWDLV 126 (174)
T ss_pred HHHHHHHHHHHHHh---hcCeEEEEEeCCCC------cchhH-----HHHHHHHHhc---------CCCEEEEEeccccC
Confidence 222221 234 57899999998741 11111 2233433321 23799999999996
Q ss_pred CCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 641 NQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 641 ~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...... .....+.+++.++.. ...+++.+|++++.|++++++.+..
T Consensus 127 ~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 127 EKDSKT---MKEFKKEIRRKLPFL--DYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred CccHHH---HHHHHHHHHhhcccc--cCCceEEEeccCCCCHHHHHHHHHH
Confidence 432122 223345555554322 1246899999999999999988764
No 191
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.3e-09 Score=118.99 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=101.5
Q ss_pred ccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCC
Q 000665 160 LEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENG 239 (1363)
Q Consensus 160 L~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~ 239 (1363)
|++||||+..|+... +-..+..+.+|+.|.|.++.+.. .+...++.|++|+.|+||++.|
T Consensus 187 lq~lDLS~s~it~st---l~~iLs~C~kLk~lSlEg~~LdD---~I~~~iAkN~~L~~lnlsm~sG-------------- 246 (419)
T KOG2120|consen 187 LQHLDLSNSVITVST---LHGILSQCSKLKNLSLEGLRLDD---PIVNTIAKNSNLVRLNLSMCSG-------------- 246 (419)
T ss_pred hHHhhcchhheeHHH---HHHHHHHHHhhhhccccccccCc---HHHHHHhccccceeeccccccc--------------
Confidence 444444444444322 22233344445555554444322 2444444555555555555432
Q ss_pred cceeeccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCC--CChHHHHHHHHHHhcC
Q 000665 240 TLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTC--LKDKGVVYVAAGLFKN 317 (1363)
Q Consensus 240 ~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~--L~d~g~~~L~~~L~~~ 317 (1363)
++.++++.+. ..++.|.+|+|++|.++.+.+..+..-+. .+|+.|+||++. +.+.. ++-....+
T Consensus 247 ------~t~n~~~ll~---~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh---~~tL~~rc 312 (419)
T KOG2120|consen 247 ------FTENALQLLL---SSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSH---LSTLVRRC 312 (419)
T ss_pred ------cchhHHHHHH---HhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhH---HHHHHHhC
Confidence 5666655543 45677888899998887766555443333 468888888874 44433 34444678
Q ss_pred CCCCEEEccCCC-CCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCC
Q 000665 318 RSLESLYLHGNW-FSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDD 394 (1363)
Q Consensus 318 ~~L~~LdLs~N~-l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N 394 (1363)
++|.+||||.|. +++.-+..+. +...|++|+++. +-.|.+.. + -.+...++|++|++.++
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~------------kf~~L~~lSlsR-CY~i~p~~---~-~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFF------------KFNYLQHLSLSR-CYDIIPET---L-LELNSKPSLVYLDVFGC 373 (419)
T ss_pred CceeeeccccccccCchHHHHHH------------hcchheeeehhh-hcCCChHH---e-eeeccCcceEEEEeccc
Confidence 888888888665 5553333332 345778887763 12222221 1 12355677778877775
No 192
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.04 E-value=6.6e-10 Score=116.86 Aligned_cols=141 Identities=19% Similarity=0.267 Sum_probs=89.3
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCc-----hhhhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQ-----HEFYS 567 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQ-----e~y~~ 567 (1363)
|++++|.+++|||||+++|.+.+... ..|.++.. ... .+||++|+ +.++.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~------------------~~~~~v~~---~~~----~~iDtpG~~~~~~~~~~~ 57 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA------------------RKTQAVEF---NDK----GDIDTPGEYFSHPRWYHA 57 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC------------------ccceEEEE---CCC----CcccCCccccCCHHHHHH
Confidence 79999999999999999998653210 11333322 122 27999998 44444
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
+... +. ...+.++|+|+++.. + .+..|+..+. ...|+++|+||.|+... +.
T Consensus 58 ~~~~-~~---~ad~il~v~d~~~~~------s------~~~~~~~~~~----------~~~~ii~v~nK~Dl~~~---~~ 108 (158)
T PRK15467 58 LITT-LQ---DVDMLIYVHGANDPE------S------RLPAGLLDIG----------VSKRQIAVISKTDMPDA---DV 108 (158)
T ss_pred HHHH-Hh---cCCEEEEEEeCCCcc------c------ccCHHHHhcc----------CCCCeEEEEEccccCcc---cH
Confidence 4443 44 689999999997521 1 1234554431 12369999999998532 22
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRT 695 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~ 695 (1363)
+.. .+.+. +. .+..++|++|++++.|++++++.|.+...+
T Consensus 109 ~~~---~~~~~-~~----~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 109 AAT---RKLLL-ET----GFEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred HHH---HHHHH-Hc----CCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 211 12222 22 122478999999999999999998875443
No 193
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.04 E-value=1.6e-09 Score=126.92 Aligned_cols=163 Identities=16% Similarity=0.159 Sum_probs=99.4
Q ss_pred eeEEecCccccchHHHHHHHhhcCCC-CCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCchh----h
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSS-SKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQHE----F 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~-~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQe~----y 565 (1363)
+.|.++|.++||||||+++|...... ...|. .|....+..+. .+..+|.+||++|.-+ .
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypf---------------TT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~ 223 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPF---------------TTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG 223 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCC---------------ceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc
Confidence 47899999999999999999865211 11111 12222222222 2456799999999732 1
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..+...|++-.....+.++|+|+++. +. .+.+..|...+....+. -...|++||+||+|+......
T Consensus 224 ~gLg~~flrhie~a~vlI~ViD~s~~---------~s-~e~~~~~~~EL~~~~~~----L~~kp~IIV~NKiDL~~~~~~ 289 (335)
T PRK12299 224 AGLGHRFLKHIERTRLLLHLVDIEAV---------DP-VEDYKTIRNELEKYSPE----LADKPRILVLNKIDLLDEEEE 289 (335)
T ss_pred ccHHHHHHHHhhhcCEEEEEEcCCCC---------CC-HHHHHHHHHHHHHhhhh----cccCCeEEEEECcccCCchhH
Confidence 12222344411156799999999841 11 35668899888764321 113469999999998643211
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
... ..+.....+ ...+|++||+++.|++++++.|.+..
T Consensus 290 ~~~----~~~~~~~~~------~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 290 REK----RAALELAAL------GGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred HHH----HHHHHHHhc------CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 111 111111121 13578999999999999999887644
No 194
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.04 E-value=2.1e-09 Score=114.55 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=92.1
Q ss_pred ecCccccchHHHHHHHhhcCC-CCCCcceeecccccccccCccCCcceEEEEEecC-ceEEEEEecCCchhhhh----cc
Q 000665 496 FCGQEYAGKTTLCNSISQNFS-SSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDE-DTRISIWNLAGQHEFYS----LH 569 (1363)
Q Consensus 496 ~vG~~~~GKTSL~~~L~~~~~-~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~-~~~l~iWDfaGQe~y~~----th 569 (1363)
++|.+|||||||+++|.+... ....+ ..|..........+ ...+.+||++|+..... +.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~---------------~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 65 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYP---------------FTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLG 65 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCC---------------ceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCcc
Confidence 589999999999999997621 11000 01111111222223 67899999999744222 21
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhh-ccCCCeEEEEEeccCCCCCCchhhH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQ-QCMLPNVTVVLTHYDKINQPSQDMQ 648 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~-~~~~p~VilVgTh~D~~~~~~~~~~ 648 (1363)
.-|+.......++++|+|+++... + ........+..|...+..+.+...- .-...|+++|+||+|+...... .
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~--~ 139 (176)
T cd01881 66 NQFLAHIRRADAILHVVDASEDDD---I-GGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL--E 139 (176)
T ss_pred HHHHHHHhccCEEEEEEeccCCcc---c-cccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH--H
Confidence 112221115788999999874100 0 0002235567787777654221000 0012379999999999643211 1
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 649 LTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 649 ~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
. .. ...... .....++.+|++++.|++++++.+..
T Consensus 140 ~---~~--~~~~~~---~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 140 E---EL--VRELAL---EEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred H---HH--HHHHhc---CCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 1 00 111111 11245799999999999999887753
No 195
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.04 E-value=8.2e-09 Score=125.56 Aligned_cols=153 Identities=12% Similarity=0.127 Sum_probs=95.8
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc-
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH- 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th- 569 (1363)
.+|+.++|.+|||||||+++|.+..... +.+.++ .|.-+....+.-+...+.+|||+|+..+....
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~ai-----------vs~~pg--tTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie 269 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAI-----------VSDIKG--TTRDVVEGDFELNGILIKLLDTAGIREHADFVE 269 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcc-----------cCCCCC--cEEEEEEEEEEECCEEEEEeeCCCcccchhHHH
Confidence 4699999999999999999999751100 001111 12222222333456778999999996654321
Q ss_pred -------ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 570 -------DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 570 -------~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
..++. ...++++|+|+++. .+ .+ . .|+..+... ..|+++|+||.|+...
T Consensus 270 ~~gi~~~~~~~~---~aD~il~V~D~s~~------~s---~~-~--~~l~~~~~~---------~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 270 RLGIEKSFKAIK---QADLVIYVLDASQP------LT---KD-D--FLIIDLNKS---------KKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHHHHHHHHHh---hCCEEEEEEECCCC------CC---hh-H--HHHHHHhhC---------CCCEEEEEECccCCCc
Confidence 23456 78999999999751 12 21 1 277766431 2369999999999532
Q ss_pred CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHH
Q 000665 643 PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRTIL 697 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~i~ 697 (1363)
+. +.+.+.+. .+++.+|+++ .||+++++.|.+.+.+..
T Consensus 326 ---~~-------~~~~~~~~------~~~~~vSak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 326 ---SL-------EFFVSSKV------LNSSNLSAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred ---ch-------hhhhhhcC------CceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 11 11112211 2457899998 689999998888766654
No 196
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.03 E-value=2e-09 Score=118.00 Aligned_cols=122 Identities=11% Similarity=0.172 Sum_probs=77.0
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDL 571 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~ 571 (1363)
+++++|++++|||||+++|..+ +... .+++. ...+............+.+||++||+.|......
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t-~~s~~-------------~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~ 67 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST-VTSIE-------------PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLE 67 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc-cCcEe-------------ecceEEEeecCCCCceEEEEECCCCHHHHHHHHH
Confidence 5899999999999999999976 2211 11110 0111111111134678999999999999888877
Q ss_pred ccccCCCC-eEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 572 MFPGHGSA-SCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 572 Flt~~~~~-alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
++. .. ..+|+|+|+++. .........+|...+..... ....+||+||+||.|+....
T Consensus 68 ~~~---~~~~~vV~VvD~~~~--------~~~~~~~~~~l~~il~~~~~----~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 68 TLK---NSAKGIVFVVDSATF--------QKNLKDVAEFLYDILTDLEK----VKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHh---ccCCEEEEEEECccc--------hhHHHHHHHHHHHHHHHHhh----ccCCCCEEEEecchhhcccC
Confidence 788 67 899999999741 12333333333333322110 11245899999999997544
No 197
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.03 E-value=2.8e-09 Score=124.96 Aligned_cols=164 Identities=19% Similarity=0.227 Sum_probs=99.3
Q ss_pred eeEEecCccccchHHHHHHHhhcCCC-CCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhh----h
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSS-SKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEF----Y 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~-~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y----~ 566 (1363)
+.|.++|.++||||||+++|...... ...|++ ....+.|+ ..+ ++...+.+||++|+.+. .
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fT-----------T~~p~ig~--v~~-~~~~~~~i~D~PGli~~a~~~~ 223 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFT-----------TLVPNLGV--VRV-DDGRSFVIADIPGLIEGASEGA 223 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCC-----------ccCCEEEE--EEe-CCceEEEEEeCCCcccCCcccc
Confidence 47899999999999999999975211 111110 00112232 122 23478999999998532 1
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
.+-..|++......+.++|+|+++.. ..+..+.+..|.+.+....+. -...|++||+||+|+... ..
T Consensus 224 gLg~~flrhierad~ll~VvD~s~~~-------~~~~~e~l~~l~~EL~~~~~~----l~~kp~IIV~NK~DL~~~--~~ 290 (329)
T TIGR02729 224 GLGHRFLKHIERTRVLLHLIDISPLD-------GRDPIEDYEIIRNELKKYSPE----LAEKPRIVVLNKIDLLDE--EE 290 (329)
T ss_pred cHHHHHHHHHHhhCEEEEEEcCcccc-------ccCHHHHHHHHHHHHHHhhhh----hccCCEEEEEeCccCCCh--HH
Confidence 22233444111467999999997521 112335667787777653221 012368999999999642 11
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..+..+.+.+.+. ..++++|++++.+++++++.|.+
T Consensus 291 ---~~~~~~~l~~~~~------~~vi~iSAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 291 ---LAELLKELKKALG------KPVFPISALTGEGLDELLYALAE 326 (329)
T ss_pred ---HHHHHHHHHHHcC------CcEEEEEccCCcCHHHHHHHHHH
Confidence 1123344443331 25789999999999999988865
No 198
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.03 E-value=1.5e-09 Score=119.62 Aligned_cols=167 Identities=16% Similarity=0.139 Sum_probs=91.2
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecc-------------cccccccCccCCcceEEE----EEecCceEEE
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVR-------------TLVNPVEQAVRPVGMKIK----TLKDEDTRIS 555 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~-------------~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~ 555 (1363)
++.++|..++|||||+++|.........+.++.+. ...-...+.++..|+.+. .+..++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 57899999999999999997652111000100000 000000111222333322 3334677899
Q ss_pred EEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEe
Q 000665 556 IWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLT 635 (1363)
Q Consensus 556 iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgT 635 (1363)
+||++|++.|.......+. ...+.++|+|+++. ....... +...+.. ...|++|+|.|
T Consensus 81 liDTpG~~~~~~~~~~~~~---~ad~~llVvD~~~~--------~~~~~~~---~~~~~~~--------~~~~~iIvviN 138 (208)
T cd04166 81 IADTPGHEQYTRNMVTGAS---TADLAILLVDARKG--------VLEQTRR---HSYILSL--------LGIRHVVVAVN 138 (208)
T ss_pred EEECCcHHHHHHHHHHhhh---hCCEEEEEEECCCC--------ccHhHHH---HHHHHHH--------cCCCcEEEEEE
Confidence 9999999998764444455 78899999998741 1111111 1222222 11356899999
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhH
Q 000665 636 HYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTK 684 (1363)
Q Consensus 636 h~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~ 684 (1363)
|+|+..............++.+...++.. ..+++.+|+.++.|+++
T Consensus 139 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 139 KMDLVDYSEEVFEEIVADYLAFAAKLGIE---DITFIPISALDGDNVVS 184 (208)
T ss_pred chhcccCCHHHHHHHHHHHHHHHHHcCCC---CceEEEEeCCCCCCCcc
Confidence 99996432222222222222232333210 13578999999999875
No 199
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.03 E-value=5.8e-09 Score=128.23 Aligned_cols=171 Identities=15% Similarity=0.208 Sum_probs=104.5
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCch------
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQH------ 563 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe------ 563 (1363)
..+++.++|.+++|||||+++|.+.... ...+.+++ |.-.-...+..+...+.+||++|..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~-----------~~~~~~gt--t~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~ 238 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERV-----------IVSDIAGT--TRDSIDTPFERDGQKYTLIDTAGIRRKGKVT 238 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCce-----------eecCCCCc--eEEEEEEEEEECCeeEEEEECCCCCCCcchh
Confidence 3589999999999999999999865110 00111111 1111112233456678999999953
Q ss_pred ---hhhhcccc--ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccC
Q 000665 564 ---EFYSLHDL--MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYD 638 (1363)
Q Consensus 564 ---~y~~th~~--Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D 638 (1363)
+++..... ++. ...++++|+|+++. .+.. -..++..+... ..|+++|+||+|
T Consensus 239 ~~~e~~~~~~~~~~~~---~ad~~ilViD~~~~------~~~~-----~~~i~~~~~~~---------~~~~ivv~NK~D 295 (435)
T PRK00093 239 EGVEKYSVIRTLKAIE---RADVVLLVIDATEG------ITEQ-----DLRIAGLALEA---------GRALVIVVNKWD 295 (435)
T ss_pred hHHHHHHHHHHHHHHH---HCCEEEEEEeCCCC------CCHH-----HHHHHHHHHHc---------CCcEEEEEECcc
Confidence 23322221 345 67899999999741 1211 12334444331 126999999999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHhhcCch
Q 000665 639 KINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRTILQRVPRV 703 (1363)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~i~~~~P~~ 703 (1363)
+... .. ..+..+.++..+... -..+++++||+++.|++++++.+.+...+..+++|..
T Consensus 296 l~~~--~~---~~~~~~~~~~~l~~~--~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~ 353 (435)
T PRK00093 296 LVDE--KT---MEEFKKELRRRLPFL--DYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTS 353 (435)
T ss_pred CCCH--HH---HHHHHHHHHHhcccc--cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChH
Confidence 9621 11 223344455444322 1236899999999999999999988777766677765
No 200
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.02 E-value=4.3e-09 Score=110.30 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=93.2
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
..++.++|.+|+|||||++++.+..... + .+.. ..|..........+...+.+||++|.........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~----~-------~~~~--~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 69 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISI----V-------SPKP--QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG 69 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEe----c-------cCCC--CceeceEEEEEEcCCeEEEEEECCCCCcchHHHH
Confidence 3589999999999999999998652100 0 0000 1111111122334567899999999865443221
Q ss_pred c--------ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 571 L--------MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 571 ~--------Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
. .+. ...+.++|+|+++. .. .....++..+... ..|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~~---~~d~i~~v~d~~~~--------~~---~~~~~~~~~~~~~---------~~~~iiv~nK~Dl~~~ 126 (168)
T cd04163 70 ERMVKAAWSALK---DVDLVLFVVDASEP--------IG---EGDEFILELLKKS---------KTPVILVLNKIDLVKD 126 (168)
T ss_pred HHHHHHHHHHHH---hCCEEEEEEECCCc--------cC---chHHHHHHHHHHh---------CCCEEEEEEchhcccc
Confidence 1 234 56788889998741 01 1223334444331 1269999999999632
Q ss_pred CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 643 PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
. +...+..+.+...+. ..+++.+|++++.+++++++.|.+
T Consensus 127 ~----~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 127 K----EDLLPLLEKLKELGP-----FAEIFPISALKGENVDELLEEIVK 166 (168)
T ss_pred H----HHHHHHHHHHHhccC-----CCceEEEEeccCCChHHHHHHHHh
Confidence 1 112223344443322 236789999999999999988865
No 201
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.01 E-value=2.9e-09 Score=105.02 Aligned_cols=160 Identities=19% Similarity=0.280 Sum_probs=104.9
Q ss_pred CCceeEEecCccccchHHHHHHHhhc---CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhh
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQN---FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~---~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y 565 (1363)
...+|+++||..++|||+++.+|..+ ......||+++ +.-..+.+-.+-.-.+++||++|-..|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-------------iY~~svet~rgarE~l~lyDTaGlq~~ 73 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-------------IYVASVETDRGAREQLRLYDTAGLQGG 73 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-------------heeEeeecCCChhheEEEeecccccCc
Confidence 45689999999999999999999876 22334444443 111112222234568999999997777
Q ss_pred -hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHH--HHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 566 -YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIE--EDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 566 -~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~--~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
...-.+|++ -.+.|+|||+..+ ++.++ +.+..|++.-+. ++ --||++.||+.|+.+.
T Consensus 74 ~~eLprhy~q---~aDafVLVYs~~d---------~eSf~rv~llKk~Idk~Kd--KK------EvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 74 QQELPRHYFQ---FADAFVLVYSPMD---------PESFQRVELLKKEIDKHKD--KK------EVPIVVLANKRDRAEP 133 (198)
T ss_pred hhhhhHhHhc---cCceEEEEecCCC---------HHHHHHHHHHHHHHhhccc--cc------cccEEEEechhhcccc
Confidence 666677888 7889999999764 34443 667778776222 22 2379999999999755
Q ss_pred CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 643 PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...+.+.+....+ +++ -..|.|++++..++-+-|..|..
T Consensus 134 ~~vd~d~A~~Wa~--rEk--------vkl~eVta~dR~sL~epf~~l~~ 172 (198)
T KOG3883|consen 134 REVDMDVAQIWAK--REK--------VKLWEVTAMDRPSLYEPFTYLAS 172 (198)
T ss_pred hhcCHHHHHHHHh--hhh--------eeEEEEEeccchhhhhHHHHHHH
Confidence 4444332211111 111 24689999998887777777655
No 202
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.01 E-value=5.4e-09 Score=135.27 Aligned_cols=170 Identities=16% Similarity=0.206 Sum_probs=103.1
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCch-------
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQH------- 563 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe------- 563 (1363)
..|+.++|.++||||||+++|.++.... +.+.+++ |.......+..++..+.+||++|+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~-----------v~~~~gt--T~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~ 516 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAV-----------VNDLAGT--TRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLT 516 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccc-----------cCCCCCC--CcCcceeEEEECCCEEEEEECCCcccCcccch
Confidence 4699999999999999999999762100 0011111 2211112222244567799999963
Q ss_pred --hhhhccc--cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCC
Q 000665 564 --EFYSLHD--LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDK 639 (1363)
Q Consensus 564 --~y~~th~--~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~ 639 (1363)
+|+.... ..+. ...+.++|+|+++. .+.+. ..|+..+... ..|++||+||+|+
T Consensus 517 ~~e~~~~~r~~~~i~---~advvilViDat~~------~s~~~-----~~i~~~~~~~---------~~piIiV~NK~DL 573 (712)
T PRK09518 517 GAEYYSSLRTQAAIE---RSELALFLFDASQP------ISEQD-----LKVMSMAVDA---------GRALVLVFNKWDL 573 (712)
T ss_pred hHHHHHHHHHHHHhh---cCCEEEEEEECCCC------CCHHH-----HHHHHHHHHc---------CCCEEEEEEchhc
Confidence 3443321 2245 68899999999852 12221 2344444321 1269999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHhhcCch
Q 000665 640 INQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRTILQRVPRV 703 (1363)
Q Consensus 640 ~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~i~~~~P~~ 703 (1363)
.... ..+ ...+.++..+.. .. ..+++.+||+++.|++++++.+.+.......++|..
T Consensus 574 ~~~~--~~~---~~~~~~~~~l~~-~~-~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~ 630 (712)
T PRK09518 574 MDEF--RRQ---RLERLWKTEFDR-VT-WARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTG 630 (712)
T ss_pred CChh--HHH---HHHHHHHHhccC-CC-CCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChH
Confidence 6421 111 222334444322 11 135688999999999999999988777666677765
No 203
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.00 E-value=1.9e-09 Score=132.45 Aligned_cols=149 Identities=14% Similarity=0.124 Sum_probs=93.1
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchh--------
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHE-------- 564 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~-------- 564 (1363)
++.++|.+|||||||+++|.+...... .+.++ .|..............+.+||++|++.
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~v-----------~~~~~--~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~ 69 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIV-----------ADTPG--VTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQ 69 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-----------CCCCC--CcccceEEEEEECCcEEEEEECCCCCCcchhHHHH
Confidence 799999999999999999987521100 00111 122222222333448999999999987
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
+......++. ..+++++|+|.++ ........+..||+.. ..|+++|+||+|.....
T Consensus 70 ~~~~~~~~~~---~ad~il~vvd~~~--------~~~~~~~~~~~~l~~~------------~~piilv~NK~D~~~~~- 125 (435)
T PRK00093 70 IREQAELAIE---EADVILFVVDGRA--------GLTPADEEIAKILRKS------------NKPVILVVNKVDGPDEE- 125 (435)
T ss_pred HHHHHHHHHH---hCCEEEEEEECCC--------CCCHHHHHHHHHHHHc------------CCcEEEEEECccCccch-
Confidence 2222233455 7899999999874 1223334566777643 12699999999974311
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+ ...+.. .+ .+ ..++++|+.++.|++++++.|..
T Consensus 126 ---~----~~~~~~-~l----g~-~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 ---A----DAYEFY-SL----GL-GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ---h----hHHHHH-hc----CC-CCCEEEEeeCCCCHHHHHHHHHh
Confidence 1 111111 11 11 23588999999999999887754
No 204
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.00 E-value=5e-10 Score=152.54 Aligned_cols=182 Identities=12% Similarity=0.129 Sum_probs=84.0
Q ss_pred HhhcCCCccEEEEecCCCCHHH--HHHHHHHhHc-CCCccEEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCCChh
Q 000665 97 LLDCSSNVKQVVFRRNKFDAEC--LAEISDVVRR-NGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSK 173 (1363)
Q Consensus 97 ~L~~~~~L~~L~Ls~N~i~~~~--~~~l~~~L~~-~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~ 173 (1363)
++..+.+|+.|.+..+...... ...+...+.. ..+|+.|++.++.+.. ++..+ ...+|+.|+|++|.+..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-----lP~~f-~~~~L~~L~L~~s~l~~- 625 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-----MPSNF-RPENLVKLQMQGSKLEK- 625 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-----CCCcC-CccCCcEEECcCccccc-
Confidence 4466777777777655422100 0011111112 1346666666665431 11111 23456666666666543
Q ss_pred hHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCc-hhHH
Q 000665 174 GAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDV-SGSC 252 (1363)
Q Consensus 174 g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~-~g~~ 252 (1363)
+...+...++|+.|+|++|......+ .+...++|+.|+|++|... ..+...+..+++|+.++++. ..+.
T Consensus 626 ----L~~~~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L--~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 626 ----LWDGVHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSL--VELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred ----cccccccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCc--cccchhhhccCCCCEEeCCCCCCcC
Confidence 22333445566666666554222111 1334556666666665321 12333344455555555543 2233
Q ss_pred HHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCC
Q 000665 253 RVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLK 303 (1363)
Q Consensus 253 ~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~ 303 (1363)
.++..+ .+++|+.|+|++|..-. .+.. ...+|+.|+|++|.+.
T Consensus 696 ~Lp~~i-~l~sL~~L~Lsgc~~L~----~~p~---~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 696 ILPTGI-NLKSLYRLNLSGCSRLK----SFPD---ISTNISWLDLDETAIE 738 (1153)
T ss_pred ccCCcC-CCCCCCEEeCCCCCCcc----cccc---ccCCcCeeecCCCccc
Confidence 333222 34566666666663211 1111 1245666666666654
No 205
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.00 E-value=3e-09 Score=134.70 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=98.0
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe--cCceEEEEEecCCchhhhhc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK--DEDTRISIWNLAGQHEFYSL 568 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~--~~~~~l~iWDfaGQe~y~~t 568 (1363)
.++.++|..++|||||+++|... +.....+. ...+.|.-...|. +....+.+||++||+.|..+
T Consensus 245 p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~G-------------iTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~m 311 (742)
T CHL00189 245 PIVTILGHVDHGKTTLLDKIRKTQIAQKEAGG-------------ITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSM 311 (742)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCccccCCc-------------cccccceEEEEEEecCCceEEEEEECCcHHHHHHH
Confidence 48999999999999999999875 22111110 0112232222333 35689999999999999999
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhH
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQ 648 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~ 648 (1363)
...++. ...+.++|+|+.+. ..+++. +. | ..+.. ...|+|+|+||+|+.... .+
T Consensus 312 r~rg~~---~aDiaILVVDA~dG------v~~QT~-E~---I-~~~k~---------~~iPiIVViNKiDl~~~~---~e 365 (742)
T CHL00189 312 RSRGAN---VTDIAILIIAADDG------VKPQTI-EA---I-NYIQA---------ANVPIIVAINKIDKANAN---TE 365 (742)
T ss_pred HHHHHH---HCCEEEEEEECcCC------CChhhH-HH---H-HHHHh---------cCceEEEEEECCCccccC---HH
Confidence 888888 78899999998742 112222 11 1 11221 122699999999996422 12
Q ss_pred HHHHHHHHHHHH--hccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 649 LTVSSIQRLKDK--FQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 649 ~~~~~~~~lr~~--f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
++ .+.+... +.....-..+++++||.+|.|+++|++.|..
T Consensus 366 ~v---~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~ 407 (742)
T CHL00189 366 RI---KQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILL 407 (742)
T ss_pred HH---HHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhh
Confidence 11 1222211 0000000125789999999999999887643
No 206
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.99 E-value=1.1e-09 Score=106.50 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=107.7
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCchhhhh
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQe~y~~ 567 (1363)
...+|+.++|-.+|||||+++.|..+-.. .-.+|.|+.++.+. ++.+.++|||.|||.--+.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~-----------------hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRp 77 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-----------------HLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRP 77 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh-----------------hccccCCcceEEEeecCcEEEEEEecCCccccch
Confidence 56689999999999999999999976221 12358999999887 4679999999999999999
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
.|.-|+. .-...|.|.|.++ .+.++++.+.+..-++..+.. .-||.|-+||-|+....+...
T Consensus 78 yWsNYye---nvd~lIyVIDS~D------~krfeE~~~el~ELleeeKl~---------~vpvlIfankQdlltaa~~ee 139 (185)
T KOG0074|consen 78 YWSNYYE---NVDGLIYVIDSTD------EKRFEEISEELVELLEEEKLA---------EVPVLIFANKQDLLTAAKVEE 139 (185)
T ss_pred hhhhhhh---ccceEEEEEeCCc------hHhHHHHHHHHHHHhhhhhhh---------ccceeehhhhhHHHhhcchHH
Confidence 9999999 7788888899664 234556656666666655541 226999999999865432221
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTH 687 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~ 687 (1363)
...+..+..++.+-. .+-.+|+.++.|+..-.+
T Consensus 140 ia~klnl~~lrdRsw-------hIq~csals~eg~~dg~~ 172 (185)
T KOG0074|consen 140 IALKLNLAGLRDRSW-------HIQECSALSLEGSTDGSD 172 (185)
T ss_pred HHHhcchhhhhhceE-------EeeeCccccccCccCcch
Confidence 111122333443321 223456667766654333
No 207
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.99 E-value=4.7e-09 Score=114.66 Aligned_cols=164 Identities=18% Similarity=0.149 Sum_probs=89.5
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCchhhhhcc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQe~y~~th 569 (1363)
+|+.++|.+|+|||||+++|.+. +.....++++. ...|.. ...+. +....+.+||++|........
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~----------~~~t~~--~~~~~~~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGV----------VETTMK--RTPYPHPKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCc----------cccccC--ceeeecCCCCCceEEeCCCCCcccCCH
Confidence 68999999999999999999975 21111111110 001111 11111 123478999999985332222
Q ss_pred ccc-----cccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 570 DLM-----FPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 570 ~~F-----lt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
..| +. ..+++++|.+ + ++.+ .-..|+..++.. ..|+++|+||+|+.....
T Consensus 70 ~~~l~~~~~~---~~d~~l~v~~--~--------~~~~---~d~~~~~~l~~~---------~~~~ilV~nK~D~~~~~~ 124 (197)
T cd04104 70 DDYLEEMKFS---EYDFFIIISS--T--------RFSS---NDVKLAKAIQCM---------GKKFYFVRTKVDRDLSNE 124 (197)
T ss_pred HHHHHHhCcc---CcCEEEEEeC--C--------CCCH---HHHHHHHHHHHh---------CCCEEEEEecccchhhhh
Confidence 222 34 5677777643 1 1222 224556666542 126999999999953211
Q ss_pred hh----hHHHHHHHHHHHHH----hccccCCCCcEEEEcCC--CCCChhHHHHHHHHH
Q 000665 645 QD----MQLTVSSIQRLKDK----FQGFVDFYPTVFTIDAR--SSASVTKLTHHIRKT 692 (1363)
Q Consensus 645 ~~----~~~~~~~~~~lr~~----f~~~~~i~~~v~~vs~~--~~~~i~~L~~~L~~~ 692 (1363)
.. .....+.+++++++ +...--..+.||.+|+. .+.++..|.+.+...
T Consensus 125 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~ 182 (197)
T cd04104 125 QRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKD 182 (197)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHH
Confidence 10 00011233334333 32211123578999998 467888888877653
No 208
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.96 E-value=5e-09 Score=113.55 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=102.9
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcce--eec-cccccccc-CccCCcceEEEEEe--cCceEEEEEecCCchh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYI--EQV-RTLVNPVE-QAVRPVGMKIKTLK--DEDTRISIWNLAGQHE 564 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~--~~~-~~~~~p~~-~~~~T~Gi~i~~~~--~~~~~l~iWDfaGQe~ 564 (1363)
...+.++|..++|||||+.+|............ +.. .....+.+ ....|..+....+. .....++++|++||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 358899999999999999999966211100000 000 00001111 12234555556666 6789999999999998
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|...-..-+. ...+.|+|+|+.+. .... ...-+..+... ..|+++|.||+|+. .
T Consensus 83 f~~~~~~~~~---~~D~ailvVda~~g--------~~~~---~~~~l~~~~~~---------~~p~ivvlNK~D~~---~ 136 (188)
T PF00009_consen 83 FIKEMIRGLR---QADIAILVVDANDG--------IQPQ---TEEHLKILREL---------GIPIIVVLNKMDLI---E 136 (188)
T ss_dssp HHHHHHHHHT---TSSEEEEEEETTTB--------STHH---HHHHHHHHHHT---------T-SEEEEEETCTSS---H
T ss_pred eeecccceec---ccccceeeeecccc--------cccc---ccccccccccc---------ccceEEeeeeccch---h
Confidence 8765444455 67889999998741 1121 12222223221 12599999999997 2
Q ss_pred hhhHHHHHHHHHHHHHhccccCC----CCcEEEEcCCCCCChhHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDF----YPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i----~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+. .+..++++..|...... ..+++++|+.+|.|+++|++.|.+
T Consensus 137 ~~~---~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~ 184 (188)
T PF00009_consen 137 KEL---EEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVE 184 (188)
T ss_dssp HHH---HHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred hhH---HHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence 222 23344444333111111 136899999999999999888765
No 209
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.2e-09 Score=106.73 Aligned_cols=163 Identities=15% Similarity=0.246 Sum_probs=111.0
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
..++++++|-.|+||||+.-++.-+-.. .+..|.|..+.++..++.+++|||.|||......|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-----------------ttkPtigfnve~v~yKNLk~~vwdLggqtSirPyW 79 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-----------------TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYW 79 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-----------------ccCCCCCcCccccccccccceeeEccCcccccHHH
Confidence 3479999999999999998777643111 12337788888888899999999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
++|+. ..+..|.|+|.+++.+- ......+..-|..= +..++ .+++++||.|...........
T Consensus 80 RcYy~---dt~avIyVVDssd~dri------s~a~~el~~mL~E~--eLq~a-------~llv~anKqD~~~~~t~~E~~ 141 (182)
T KOG0072|consen 80 RCYYA---DTDAVIYVVDSSDRDRI------SIAGVELYSMLQEE--ELQHA-------KLLVFANKQDYSGALTRSEVL 141 (182)
T ss_pred HHHhc---ccceEEEEEeccchhhh------hhhHHHHHHHhccH--hhcCc-------eEEEEeccccchhhhhHHHHH
Confidence 99999 77888899998863211 11112223333221 23334 489999999985422111110
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSR 694 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~ 694 (1363)
..-.++.++.+- -.+|..|+.+|.|++...+.|....+
T Consensus 142 ~~L~l~~Lk~r~-------~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 142 KMLGLQKLKDRI-------WQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred HHhChHHHhhhe-------eEEEeeccccccCCcHHHHHHHHHHh
Confidence 111235555553 24588999999999999998876543
No 210
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.96 E-value=3.9e-09 Score=134.94 Aligned_cols=154 Identities=13% Similarity=0.178 Sum_probs=95.0
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
..+.++|..++|||||+++|.++ +.....+ ....+.|.....| .+..+.+||++||+.|..+..
T Consensus 291 pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~-------------GIT~~iga~~v~~--~~~~ItfiDTPGhe~F~~m~~ 355 (787)
T PRK05306 291 PVVTIMGHVDHGKTSLLDAIRKTNVAAGEAG-------------GITQHIGAYQVET--NGGKITFLDTPGHEAFTAMRA 355 (787)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCccccccC-------------ceeeeccEEEEEE--CCEEEEEEECCCCccchhHHH
Confidence 47999999999999999999865 2211111 0111233222233 357899999999999998887
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
..+. ...++|||+|+++.. .+++. ..|. .+.. . ..|+|||+||+|+.... .+++
T Consensus 356 rga~---~aDiaILVVdAddGv------~~qT~----e~i~-~a~~--------~-~vPiIVviNKiDl~~a~---~e~V 409 (787)
T PRK05306 356 RGAQ---VTDIVVLVVAADDGV------MPQTI----EAIN-HAKA--------A-GVPIIVAINKIDKPGAN---PDRV 409 (787)
T ss_pred hhhh---hCCEEEEEEECCCCC------CHhHH----HHHH-HHHh--------c-CCcEEEEEECccccccC---HHHH
Confidence 7666 678899999987411 11222 2221 1111 1 23699999999996422 1211
Q ss_pred HHHHHH---HHHHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 651 VSSIQR---LKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 651 ~~~~~~---lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
...+.. +.+.++.. -++|++||.+|.|+++|++.|.
T Consensus 410 ~~eL~~~~~~~e~~g~~----vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 410 KQELSEYGLVPEEWGGD----TIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred HHHHHHhcccHHHhCCC----ceEEEEeCCCCCCchHHHHhhh
Confidence 111111 11112111 2579999999999999988764
No 211
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=5.2e-11 Score=136.10 Aligned_cols=214 Identities=12% Similarity=0.040 Sum_probs=142.2
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHhccCCCc
Q 000665 81 FHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTL 160 (1363)
Q Consensus 81 Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL 160 (1363)
+++-.+.--|+..++.-=++...|+++.|.+..+.+.+.. ...+.|++++.||||.|-+. .|..+++.+...++|
T Consensus 100 i~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~--nw~~v~~i~eqLp~L 174 (505)
T KOG3207|consen 100 ISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFH--NWFPVLKIAEQLPSL 174 (505)
T ss_pred hcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHH--hHHHHHHHHHhcccc
Confidence 3333444456666666667778889999999999888766 45667899999999999886 477788888889999
Q ss_pred cEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCc
Q 000665 161 EELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGT 240 (1363)
Q Consensus 161 ~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~ 240 (1363)
+.|+|+.|.+....-...-. ..+.|+.|.|+.|.+. ..++...+...++|+.|+|..|.+.
T Consensus 175 e~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~N~~~-------------- 235 (505)
T KOG3207|consen 175 ENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEANEII-------------- 235 (505)
T ss_pred hhcccccccccCCccccchh---hhhhhheEEeccCCCC--HHHHHHHHHhCCcHHHhhhhccccc--------------
Confidence 99999999875432222222 2456889999999765 4556777778888888888887310
Q ss_pred ceeeccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH--HHHHhcCC
Q 000665 241 LRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYV--AAGLFKNR 318 (1363)
Q Consensus 241 L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L--~~~L~~~~ 318 (1363)
+... ..-...+.|++|||++|++-+..-. ..+...+.|..|+++.|.+.+...-.. ..-....+
T Consensus 236 ---------~~~~--~~~~i~~~L~~LdLs~N~li~~~~~---~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 236 ---------LIKA--TSTKILQTLQELDLSNNNLIDFDQG---YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred ---------ceec--chhhhhhHHhhccccCCcccccccc---cccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 0000 0112235788888888877553311 223445777788888887765321111 01123457
Q ss_pred CCCEEEccCCCCCH
Q 000665 319 SLESLYLHGNWFSG 332 (1363)
Q Consensus 319 ~L~~LdLs~N~l~~ 332 (1363)
+|++|+++.|+|.+
T Consensus 302 kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 302 KLEYLNISENNIRD 315 (505)
T ss_pred cceeeecccCcccc
Confidence 78888888888754
No 212
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.95 E-value=7.3e-09 Score=125.79 Aligned_cols=173 Identities=16% Similarity=0.161 Sum_probs=97.1
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCch----hhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQH----EFYS 567 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe----~y~~ 567 (1363)
++|.++|.++||||||+++|..... .+.. .| -.|....+..+..+...|.+||++|.- +...
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp-----kIad-----yp----fTTl~P~lGvv~~~~~~f~laDtPGliegas~g~g 225 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP-----KIAD-----YP----FTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKG 225 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc-----cccc-----cC----cccccceEEEEEECCeEEEEEECCCCccccchhhH
Confidence 5899999999999999999986521 1110 01 113333333344455789999999953 2222
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchh-----hhhccCCCeEEEEEeccCCCCC
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRR-----AVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~-----av~~~~~p~VilVgTh~D~~~~ 642 (1363)
+-..|++-.....+.++|+|+++....+.+ .+.+..|...+....+. .......-|+|||+||+|+...
T Consensus 226 Lg~~fLrhieradvLv~VVD~s~~e~~rdp------~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 226 LGLDFLRHIERCAVLVHVVDCATLEPGRDP------LSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred HHHHHHHHHHhcCEEEEEECCcccccccCc------hhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 222234311157889999999742111111 12334444444432210 0000112269999999998532
Q ss_pred CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHH
Q 000665 643 PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRT 695 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~ 695 (1363)
. . ..+.++..+... .-.+|.+|+.++.|+++|+..|.+....
T Consensus 300 ~--e------l~e~l~~~l~~~---g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 300 R--E------LAEFVRPELEAR---GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred H--H------HHHHHHHHHHHc---CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1 1 112222222211 1258999999999999999888765544
No 213
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.94 E-value=6.4e-09 Score=127.17 Aligned_cols=178 Identities=13% Similarity=0.127 Sum_probs=98.9
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcc----------ee--ecc-cccccccCccCCcce--EE--EEEecCc
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPY----------IE--QVR-TLVNPVEQAVRPVGM--KI--KTLKDED 551 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t----------~~--~~~-~~~~p~~~~~~T~Gi--~i--~~~~~~~ 551 (1363)
.+.+++.++|..++|||||+.+|........... .+ .+. .+.....+.++..|+ +. ..+..+.
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 3468999999999999999999986311100000 00 000 000011112233343 33 2344578
Q ss_pred eEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEE
Q 000665 552 TRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVT 631 (1363)
Q Consensus 552 ~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vi 631 (1363)
..+.+||++||+.|.......+. ...++++|+|+++... + ...+...++..... ...++++
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~---~aD~~ilVvDa~~~~~-------~-~~~~t~~~~~~~~~--------~~~~~iI 145 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGAS---QADAAVLVVAVGDGEF-------E-VQPQTREHAFLART--------LGINQLI 145 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhh---hCCEEEEEEECCCCCc-------c-cCCchHHHHHHHHH--------cCCCeEE
Confidence 89999999999998765555556 7899999999985210 0 10111122222222 1135799
Q ss_pred EEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHH
Q 000665 632 VVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLT 686 (1363)
Q Consensus 632 lVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~ 686 (1363)
+|+||+|+.....+..+...+.++.+...++.. .-.-.++++||+++.|++++.
T Consensus 146 VviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~-~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 146 VAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYN-PDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred EEEEChhccCccHHHHHHHHHHHHHHHHHcCCC-cccceEEEeeccccccccccc
Confidence 999999997432222222222222222222110 011257899999999988754
No 214
>PRK11058 GTPase HflX; Provisional
Probab=98.94 E-value=1e-08 Score=123.96 Aligned_cols=150 Identities=18% Similarity=0.214 Sum_probs=88.0
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCchh------
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQHE------ 564 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQe~------ 564 (1363)
++.++|.++||||||+++|.+. ......++ .|.......+. ++...+.+|||+|+..
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~---------------tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~l 263 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEARVYAADQLF---------------ATLDPTLRRIDVADVGETVLADTVGFIRHLPHDL 263 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeccCCC---------------CCcCCceEEEEeCCCCeEEEEecCcccccCCHHH
Confidence 7999999999999999999875 11111110 01111111221 2233788999999833
Q ss_pred ---hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCC
Q 000665 565 ---FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKIN 641 (1363)
Q Consensus 565 ---y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~ 641 (1363)
|..+... +. .+.+.|+|+|+++ +...+.. ..+..||..+.. ...|+++|+||+|+..
T Consensus 264 ve~f~~tl~~-~~---~ADlIL~VvDaS~------~~~~e~l-~~v~~iL~el~~---------~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 264 VAAFKATLQE-TR---QATLLLHVVDAAD------VRVQENI-EAVNTVLEEIDA---------HEIPTLLVMNKIDMLD 323 (426)
T ss_pred HHHHHHHHHH-hh---cCCEEEEEEeCCC------ccHHHHH-HHHHHHHHHhcc---------CCCCEEEEEEcccCCC
Confidence 3333222 34 6899999999985 1111111 223445554432 1247999999999963
Q ss_pred CCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 642 QPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 642 ~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.. . .. ... ... +. +.++.+||++|.|+++|++.|.+
T Consensus 324 ~~--~-~~----~~~--~~~-~~----~~~v~ISAktG~GIdeL~e~I~~ 359 (426)
T PRK11058 324 DF--E-PR----IDR--DEE-NK----PIRVWLSAQTGAGIPLLFQALTE 359 (426)
T ss_pred ch--h-HH----HHH--Hhc-CC----CceEEEeCCCCCCHHHHHHHHHH
Confidence 21 1 10 111 111 11 22477999999999999988865
No 215
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.94 E-value=1.1e-08 Score=122.88 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=97.3
Q ss_pred eeEEecCccccchHHHHHHHhhcCCC-CCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCchh----h
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSS-SKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQHE----F 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~-~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQe~----y 565 (1363)
+.|.++|.++||||||+++|...... ...|.+ |....+..+. ++...|.+||++|.-+ +
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfT---------------Tl~PnlG~v~~~~~~~~~laD~PGliega~~~ 223 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFT---------------TLVPNLGVVETDDGRSFVMADIPGLIEGASEG 223 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcc---------------eeceEEEEEEEeCCceEEEEECCCCccccccc
Confidence 47899999999999999999965211 111111 2111222222 2357899999999743 2
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..+-..|++......+.++|+|+++.+ ..+..+.+..|.+.+....+. -...|++||+||+|+.. .
T Consensus 224 ~gLg~~fLrhier~~llI~VID~s~~~-------~~dp~e~~~~i~~EL~~y~~~----L~~kP~IVV~NK~DL~~-~-- 289 (424)
T PRK12297 224 VGLGHQFLRHIERTRVIVHVIDMSGSE-------GRDPIEDYEKINKELKLYNPR----LLERPQIVVANKMDLPE-A-- 289 (424)
T ss_pred chHHHHHHHHHhhCCEEEEEEeCCccc-------cCChHHHHHHHHHHHhhhchh----ccCCcEEEEEeCCCCcC-C--
Confidence 222233455221478999999997411 011224456677766653221 01236899999999732 1
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
. +.++.+++.+. ..+|.+||.++.|+++|++.|.+.
T Consensus 290 -~----e~l~~l~~~l~------~~i~~iSA~tgeGI~eL~~~L~~~ 325 (424)
T PRK12297 290 -E----ENLEEFKEKLG------PKVFPISALTGQGLDELLYAVAEL 325 (424)
T ss_pred -H----HHHHHHHHHhC------CcEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 12334444443 257899999999999999888653
No 216
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.93 E-value=9.6e-09 Score=129.28 Aligned_cols=160 Identities=16% Similarity=0.223 Sum_probs=96.8
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEE--EEEecCceEEEEEecCCchhhhhccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKI--KTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i--~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
.+.++|..++|||||+++|.+.... .+ |. ...++..+++ ..+..++..+.+||++||+.|....-
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d-~~-----------~e-E~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAAD-RL-----------PE-EKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCc-CC-----------hh-HhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHH
Confidence 5789999999999999999853110 00 00 0111222222 22333458999999999999988776
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.++. ...+.++|+|+++. ..+++. .++..+.. .+.|+++||+||+|+... ...+..
T Consensus 69 ~g~~---~aD~aILVVDa~~G------~~~qT~-----ehl~il~~--------lgi~~iIVVlNK~Dlv~~--~~~~~~ 124 (581)
T TIGR00475 69 AGGG---GIDAALLVVDADEG------VMTQTG-----EHLAVLDL--------LGIPHTIVVITKADRVNE--EEIKRT 124 (581)
T ss_pred hhhc---cCCEEEEEEECCCC------CcHHHH-----HHHHHHHH--------cCCCeEEEEEECCCCCCH--HHHHHH
Confidence 6677 78999999999741 112222 22222222 123459999999999642 112212
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+.++.+...+.. .-..+++++|+.++.|++++++.|.+
T Consensus 125 ~~ei~~~l~~~~~--~~~~~ii~vSA~tG~GI~eL~~~L~~ 163 (581)
T TIGR00475 125 EMFMKQILNSYIF--LKNAKIFKTSAKTGQGIGELKKELKN 163 (581)
T ss_pred HHHHHHHHHHhCC--CCCCcEEEEeCCCCCCchhHHHHHHH
Confidence 2222222222211 00236899999999999998876654
No 217
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.93 E-value=6.4e-09 Score=127.68 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=92.1
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCc--------hh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQ--------HE 564 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQ--------e~ 564 (1363)
++.++|.++||||||.++|.+...... .+.++. |..............+.+||++|. +.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-----------~~~~g~--t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ 67 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-----------SDTPGV--TRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQ 67 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee-----------cCCCCc--ccCceEEEEEECCeEEEEEECCCCCCcchhHHHH
Confidence 578999999999999999997521100 011111 211112222234567999999995 44
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
+......++. ...++++|+|.++ ........+..||+.. ..|+++|+||+|......
T Consensus 68 ~~~~~~~~~~---~ad~vl~vvD~~~--------~~~~~d~~i~~~l~~~------------~~piilVvNK~D~~~~~~ 124 (429)
T TIGR03594 68 IREQAEIAIE---EADVILFVVDGRE--------GLTPEDEEIAKWLRKS------------GKPVILVANKIDGKKEDA 124 (429)
T ss_pred HHHHHHHHHh---hCCEEEEEEeCCC--------CCCHHHHHHHHHHHHh------------CCCEEEEEECccCCcccc
Confidence 4444444566 7889999999874 1223334556666531 126999999999864321
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
. ..++. ++ . ...+|.+||.++.|++++++.+.+
T Consensus 125 -~-------~~~~~-~l----g-~~~~~~vSa~~g~gv~~ll~~i~~ 157 (429)
T TIGR03594 125 -V-------AAEFY-SL----G-FGEPIPISAEHGRGIGDLLDAILE 157 (429)
T ss_pred -c-------HHHHH-hc----C-CCCeEEEeCCcCCChHHHHHHHHH
Confidence 1 11111 11 1 135789999999999998876653
No 218
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.92 E-value=1.2e-08 Score=105.63 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=92.3
Q ss_pred ecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCchhhhhcccc---
Q 000665 496 FCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQHEFYSLHDL--- 571 (1363)
Q Consensus 496 ~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQe~y~~th~~--- 571 (1363)
++|.+|+|||||++++.+....... .....|.......+. .....+.+||++|+..+...+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~ 67 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-------------PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREE 67 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-------------CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHH
Confidence 5899999999999999876211000 011112222222232 22779999999999988877663
Q ss_pred ----ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 572 ----MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 572 ----Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
+++ ...++++|+|..+. .+.... . |...... ...|+++|+||+|+......
T Consensus 68 ~~~~~~~---~~d~il~v~~~~~~------~~~~~~--~---~~~~~~~---------~~~~~ivv~nK~D~~~~~~~-- 122 (163)
T cd00880 68 LARRVLE---RADLILFVVDADLR------ADEEEE--K---LLELLRE---------RGKPVLLVLNKIDLLPEEEE-- 122 (163)
T ss_pred HHHHHHH---hCCEEEEEEeCCCC------CCHHHH--H---HHHHHHh---------cCCeEEEEEEccccCChhhH--
Confidence 556 78899999998752 111111 1 3333322 12369999999999753211
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.. ..+...... .......++.+|++++.|++++++.|..
T Consensus 123 ~~---~~~~~~~~~--~~~~~~~~~~~sa~~~~~v~~l~~~l~~ 161 (163)
T cd00880 123 EE---LLELRLLIL--LLLLGLPVIAVSALTGEGIDELREALIE 161 (163)
T ss_pred HH---HHHHHHhhc--ccccCCceEEEeeeccCCHHHHHHHHHh
Confidence 11 111011111 1112246789999999999999988765
No 219
>PRK00089 era GTPase Era; Reviewed
Probab=98.91 E-value=1.6e-08 Score=117.63 Aligned_cols=155 Identities=21% Similarity=0.256 Sum_probs=92.9
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEE-EecCceEEEEEecCCchhhhhc-
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT-LKDEDTRISIWNLAGQHEFYSL- 568 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~-~~~~~~~l~iWDfaGQe~y~~t- 568 (1363)
...+.++|.+|||||||+++|.+..... +.|.+++.+. .+.. ...+...+.+||++|.......
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~-----------vs~~~~tt~~---~i~~i~~~~~~qi~~iDTPG~~~~~~~l 70 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI-----------VSPKPQTTRH---RIRGIVTEDDAQIIFVDTPGIHKPKRAL 70 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee-----------cCCCCCcccc---cEEEEEEcCCceEEEEECCCCCCchhHH
Confidence 4578999999999999999999762110 0111111111 1111 2234578999999997543211
Q ss_pred cc-------cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCC
Q 000665 569 HD-------LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKIN 641 (1363)
Q Consensus 569 h~-------~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~ 641 (1363)
.+ -.+. ..+++++|+|+++. ..+. ..+.+..+.. . ..|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~---~~D~il~vvd~~~~--------~~~~---~~~i~~~l~~-~--------~~pvilVlNKiDl~~ 127 (292)
T PRK00089 71 NRAMNKAAWSSLK---DVDLVLFVVDADEK--------IGPG---DEFILEKLKK-V--------KTPVILVLNKIDLVK 127 (292)
T ss_pred HHHHHHHHHHHHh---cCCEEEEEEeCCCC--------CChh---HHHHHHHHhh-c--------CCCEEEEEECCcCCC
Confidence 11 1233 67889999998741 1111 1233343432 1 126999999999963
Q ss_pred CCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 642 QPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 642 ~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.. +.....++.+.+.+. ...+|.+||+++.|+++|++.|.+
T Consensus 128 ~~----~~l~~~~~~l~~~~~-----~~~i~~iSA~~~~gv~~L~~~L~~ 168 (292)
T PRK00089 128 DK----EELLPLLEELSELMD-----FAEIVPISALKGDNVDELLDVIAK 168 (292)
T ss_pred CH----HHHHHHHHHHHhhCC-----CCeEEEecCCCCCCHHHHHHHHHH
Confidence 21 112233444544332 236799999999999999887765
No 220
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.91 E-value=8e-09 Score=130.14 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=102.3
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE------EE---ecCceEEEEEecCCch
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK------TL---KDEDTRISIWNLAGQH 563 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~------~~---~~~~~~l~iWDfaGQe 563 (1363)
++.++|+.++|||||+.+|.......... ..........+.+++.|+.+. .| +++.+.+++||++||+
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~---~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSER---EMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCccc---ccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 78999999999999999998641100000 001111111123455665543 23 2347899999999999
Q ss_pred hhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 564 EFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 564 ~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
.|......++. .....|+|+|+++.. ..+ ....|...... ..|+++|+||+|+....
T Consensus 86 dF~~~v~~sl~---~aD~aILVVDas~gv------~~q----t~~~~~~~~~~----------~lpiIvViNKiDl~~a~ 142 (600)
T PRK05433 86 DFSYEVSRSLA---ACEGALLVVDASQGV------EAQ----TLANVYLALEN----------DLEIIPVLNKIDLPAAD 142 (600)
T ss_pred HHHHHHHHHHH---HCCEEEEEEECCCCC------CHH----HHHHHHHHHHC----------CCCEEEEEECCCCCccc
Confidence 99888877888 788899999997521 112 22344332221 12599999999985322
Q ss_pred chhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 644 SQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 644 ~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+ ...+++++.+.-. ...++.+||+++.|+++|++.|.+
T Consensus 143 ---~~---~v~~ei~~~lg~~---~~~vi~iSAktG~GI~~Ll~~I~~ 181 (600)
T PRK05433 143 ---PE---RVKQEIEDVIGID---ASDAVLVSAKTGIGIEEVLEAIVE 181 (600)
T ss_pred ---HH---HHHHHHHHHhCCC---cceEEEEecCCCCCHHHHHHHHHH
Confidence 11 1223444433211 124789999999999998877654
No 221
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.90 E-value=1.1e-08 Score=113.11 Aligned_cols=123 Identities=15% Similarity=0.216 Sum_probs=76.5
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCC--CcceeecccccccccCccCCcceEEEE------E---ecCceEEEEEecC
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSK--LPYIEQVRTLVNPVEQAVRPVGMKIKT------L---KDEDTRISIWNLA 560 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~--~~t~~~~~~~~~p~~~~~~T~Gi~i~~------~---~~~~~~l~iWDfa 560 (1363)
++.++|..++|||||+.+|... ..... .+..+ ...+ ......+++.|+.+.. + .++...+.+||++
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~-~~~~-~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtp 79 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWK-PLRY-TDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTP 79 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCC-ceeE-CCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECC
Confidence 5789999999999999999875 21110 00000 0000 0111112334444321 2 2356899999999
Q ss_pred CchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 561 GQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 561 GQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
||+.|......++. ...++++|+|+++.. + .....|++..... ..|+++|+||+|++
T Consensus 80 G~~~f~~~~~~~~~---~aD~~llVvD~~~~~------~-----~~~~~~~~~~~~~---------~~p~iiviNK~D~~ 136 (213)
T cd04167 80 GHVNFMDEVAAALR---LSDGVVLVVDVVEGV------T-----SNTERLIRHAILE---------GLPIVLVINKIDRL 136 (213)
T ss_pred CCcchHHHHHHHHH---hCCEEEEEEECCCCC------C-----HHHHHHHHHHHHc---------CCCEEEEEECcccC
Confidence 99999877777777 788999999987411 1 1224455554321 13699999999986
No 222
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.90 E-value=1.6e-08 Score=126.31 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=94.2
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe----------------cCceEEE
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK----------------DEDTRIS 555 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~----------------~~~~~l~ 555 (1363)
-+.++|..++|||||+++|.+. +....... ..++.|.....++ .+...+.
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~gg-------------iTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~ 72 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGG-------------ITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLL 72 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCc-------------eecccCeeEeeeccccccccccccccccccccCcEE
Confidence 5899999999999999999976 22111010 0112222211111 1123489
Q ss_pred EEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEe
Q 000665 556 IWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLT 635 (1363)
Q Consensus 556 iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgT 635 (1363)
+||++||+.|..+...++. ...++++|+|+++.. .+++. +.+ .|+ +.. ..|+++|+|
T Consensus 73 ~iDTpG~e~f~~l~~~~~~---~aD~~IlVvD~~~g~------~~qt~-e~i-~~l---~~~---------~vpiIVv~N 129 (590)
T TIGR00491 73 FIDTPGHEAFTNLRKRGGA---LADLAILIVDINEGF------KPQTQ-EAL-NIL---RMY---------KTPFVVAAN 129 (590)
T ss_pred EEECCCcHhHHHHHHHHHh---hCCEEEEEEECCcCC------CHhHH-HHH-HHH---HHc---------CCCEEEEEE
Confidence 9999999999998888878 788999999997521 12222 111 222 211 126999999
Q ss_pred ccCCCCCCch------------hhHHHH--------HHHHHHHHH------hccccCC--CCcEEEEcCCCCCChhHHHH
Q 000665 636 HYDKINQPSQ------------DMQLTV--------SSIQRLKDK------FQGFVDF--YPTVFTIDARSSASVTKLTH 687 (1363)
Q Consensus 636 h~D~~~~~~~------------~~~~~~--------~~~~~lr~~------f~~~~~i--~~~v~~vs~~~~~~i~~L~~ 687 (1363)
|+|+...... ..+.+. .....+.+. |....++ .-+++++|+.+|.|+++|..
T Consensus 130 K~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~ 209 (590)
T TIGR00491 130 KIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLT 209 (590)
T ss_pred CCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHH
Confidence 9999642110 000000 011112211 1000011 13688999999999999887
Q ss_pred HHHH
Q 000665 688 HIRK 691 (1363)
Q Consensus 688 ~L~~ 691 (1363)
.|..
T Consensus 210 ~l~~ 213 (590)
T TIGR00491 210 MLAG 213 (590)
T ss_pred HHHH
Confidence 6643
No 223
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.89 E-value=1.3e-08 Score=124.50 Aligned_cols=174 Identities=11% Similarity=0.086 Sum_probs=98.3
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcc----------eeec---ccccccccCccCCcceE----EEEEecCc
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPY----------IEQV---RTLVNPVEQAVRPVGMK----IKTLKDED 551 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t----------~~~~---~~~~~p~~~~~~T~Gi~----i~~~~~~~ 551 (1363)
.+.+++.++|..++|||||+.+|........... .+.. ..+.-...+.++..|+. ...+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 4568999999999999999999985421110000 0000 00001111223344433 33455678
Q ss_pred eEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEE
Q 000665 552 TRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVT 631 (1363)
Q Consensus 552 ~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vi 631 (1363)
..+.+||++||+.|......-+. ...+.++|+|+++.. +... +...++..+.. .+.|+++
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~---~aD~~ilVvDa~~~~------~~~~---~~~~~~~~~~~--------~~~~~ii 143 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGAS---QADAAVLVVAADDAG------GVMP---QTREHVFLART--------LGINQLI 143 (425)
T ss_pred eEEEEEECCCcccchhhHhhchh---cCCEEEEEEEcccCC------CCCc---chHHHHHHHHH--------cCCCeEE
Confidence 89999999999988654333345 678999999997410 1111 11222333322 1135699
Q ss_pred EEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCC---CCcEEEEcCCCCCChhHHH
Q 000665 632 VVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDF---YPTVFTIDARSSASVTKLT 686 (1363)
Q Consensus 632 lVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i---~~~v~~vs~~~~~~i~~L~ 686 (1363)
+|+||+|+........+ ...+++++.+... .+ ...++.+||.+|.|++++.
T Consensus 144 vviNK~Dl~~~~~~~~~---~~~~~i~~~l~~~-g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 144 VAINKMDAVNYDEKRYE---EVKEEVSKLLKMV-GYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred EEEEccccccccHHHHH---HHHHHHHHHHHhh-CCCcCcceEEEeecccCCCccccc
Confidence 99999999642212222 2233333322111 11 1358899999999998765
No 224
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.3e-09 Score=115.87 Aligned_cols=236 Identities=17% Similarity=0.201 Sum_probs=164.1
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhC-CCceEEEccCCCCcchhHHHhhcCC
Q 000665 159 TLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARN-RAMEVHVWSGENGEKSSKVVEFLPE 237 (1363)
Q Consensus 159 sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~~~~~~~l~~~L~~ 237 (1363)
.-+.||+.+-+|.+.....+.. .....+.+..... ..+.++..+.-. ..|++||||...
T Consensus 137 lW~~lDl~~r~i~p~~l~~l~~-----rgV~v~Rlar~~~--~~prlae~~~~frsRlq~lDLS~s~------------- 196 (419)
T KOG2120|consen 137 LWQTLDLTGRNIHPDVLGRLLS-----RGVIVFRLARSFM--DQPRLAEHFSPFRSRLQHLDLSNSV------------- 196 (419)
T ss_pred ceeeeccCCCccChhHHHHHHh-----CCeEEEEcchhhh--cCchhhhhhhhhhhhhHHhhcchhh-------------
Confidence 3578888888887765444431 3466666654321 111122222222 257777777651
Q ss_pred CCcceeeccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHHHHhc
Q 000665 238 NGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKT-CLKDKGVVYVAAGLFK 316 (1363)
Q Consensus 238 ~~~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N-~L~d~g~~~L~~~L~~ 316 (1363)
|+ ...+-..|+.+..|+.|.|-++++.+.- +..+.+|.+|..||||.| .++..++..+ +.+
T Consensus 197 --------it---~stl~~iLs~C~kLk~lSlEg~~LdD~I----~~~iAkN~~L~~lnlsm~sG~t~n~~~ll---~~s 258 (419)
T KOG2120|consen 197 --------IT---VSTLHGILSQCSKLKNLSLEGLRLDDPI----VNTIAKNSNLVRLNLSMCSGFTENALQLL---LSS 258 (419)
T ss_pred --------ee---HHHHHHHHHHHHhhhhccccccccCcHH----HHHHhccccceeeccccccccchhHHHHH---HHh
Confidence 22 2344556678889999999999999864 445668899999999986 4888887755 567
Q ss_pred CCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCC
Q 000665 317 NRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQS 396 (1363)
Q Consensus 317 ~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~ 396 (1363)
++.|.+|+|+-+.++..-+..+...+ ..+|+.|+|+|..-++.. ..++-....|++|.+|||++|..
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hi----------se~l~~LNlsG~rrnl~~---sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHI----------SETLTQLNLSGYRRNLQK---SHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhh----------chhhhhhhhhhhHhhhhh---hHHHHHHHhCCceeeeccccccc
Confidence 88999999999998887777766644 568999999975444444 34555667899999999999977
Q ss_pred CCHHHHHHHHHHHhhCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCCC
Q 000665 397 LRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTP 454 (1363)
Q Consensus 397 i~~~gl~~L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~ 454 (1363)
+.+ .++..+-+.+-|++|+|+.|...+.+ -.-.+...|+|..||+.++-
T Consensus 326 l~~----~~~~~~~kf~~L~~lSlsRCY~i~p~-----~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 326 LKN----DCFQEFFKFNYLQHLSLSRCYDIIPE-----TLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCc----hHHHHHHhcchheeeehhhhcCCChH-----HeeeeccCcceEEEEecccc
Confidence 776 34556667899999999999853332 11234557999999998763
No 225
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.87 E-value=1.3e-08 Score=131.68 Aligned_cols=147 Identities=15% Similarity=0.101 Sum_probs=90.7
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchh--
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHE-- 564 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~-- 564 (1363)
..++.++|.++||||||+++|.+...... ..+.|+.... ....+..|.+||+||++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-----------------~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~ 337 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVV-----------------EDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV 337 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceee-----------------cCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC
Confidence 45899999999999999999987521100 0123332221 112456899999999874
Q ss_pred ------hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccC
Q 000665 565 ------FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYD 638 (1363)
Q Consensus 565 ------y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D 638 (1363)
|......++. ...++|+|+|+++ .....+. .|.+.++.. ..||++|+||+|
T Consensus 338 ~~~~~~~~~~~~~~~~---~aD~iL~VvDa~~--------~~~~~d~---~i~~~Lr~~---------~~pvIlV~NK~D 394 (712)
T PRK09518 338 EGIDSAIASQAQIAVS---LADAVVFVVDGQV--------GLTSTDE---RIVRMLRRA---------GKPVVLAVNKID 394 (712)
T ss_pred ccHHHHHHHHHHHHHH---hCCEEEEEEECCC--------CCCHHHH---HHHHHHHhc---------CCCEEEEEECcc
Confidence 2222333456 7899999999874 2222323 344444321 227999999999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 639 KINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..... .. ..+..+. .+ ..+|++||.++.|+++|++.|.+
T Consensus 395 ~~~~~----~~---~~~~~~l------g~-~~~~~iSA~~g~GI~eLl~~i~~ 433 (712)
T PRK09518 395 DQASE----YD---AAEFWKL------GL-GEPYPISAMHGRGVGDLLDEALD 433 (712)
T ss_pred cccch----hh---HHHHHHc------CC-CCeEEEECCCCCCchHHHHHHHH
Confidence 85321 10 0111111 11 23578999999999999987764
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.86 E-value=4.4e-08 Score=108.89 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=92.8
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCCCcceeec--------cccccccc----CccCCcce------------EEEEE
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQV--------RTLVNPVE----QAVRPVGM------------KIKTL 547 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~--------~~~~~p~~----~~~~T~Gi------------~i~~~ 547 (1363)
|+.++|+.++|||||+.++..+ +........... +....+.. +.. ..|. ....+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFD-SDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccC-CCCceecCCCCccccccceee
Confidence 5789999999999999999975 432111000000 00000000 000 0010 00112
Q ss_pred ecCceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCC
Q 000665 548 KDEDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCML 627 (1363)
Q Consensus 548 ~~~~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~ 627 (1363)
......+.+.|++|++.|...-..-+++. ...+.++|+|+... .... -..++..+... +.
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~-~~D~~llVvda~~g--------~~~~---d~~~l~~l~~~--------~i 139 (224)
T cd04165 80 EKSSKLVTFIDLAGHERYLKTTLFGLTGY-APDYAMLVVAANAG--------IIGM---TKEHLGLALAL--------NI 139 (224)
T ss_pred eeCCcEEEEEECCCcHHHHHHHHHhhccc-CCCEEEEEEECCCC--------CcHH---HHHHHHHHHHc--------CC
Confidence 23456889999999999865433223211 35678889998641 1222 23334444331 12
Q ss_pred CeEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhcc-----------------------ccCCCCcEEEEcCCCCCChhH
Q 000665 628 PNVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQG-----------------------FVDFYPTVFTIDARSSASVTK 684 (1363)
Q Consensus 628 p~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~-----------------------~~~i~~~v~~vs~~~~~~i~~ 684 (1363)
|+++|.||+|+.+. .. .....+.+++.+.. ......++|.+||.+|.|++.
T Consensus 140 -p~ivvvNK~D~~~~--~~---~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~ 213 (224)
T cd04165 140 -PVFVVVTKIDLAPA--NI---LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDL 213 (224)
T ss_pred -CEEEEEECccccCH--HH---HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHH
Confidence 58999999998632 12 22233333333221 011224789999999999999
Q ss_pred HHHHHH
Q 000665 685 LTHHIR 690 (1363)
Q Consensus 685 L~~~L~ 690 (1363)
|.+.|.
T Consensus 214 L~~~L~ 219 (224)
T cd04165 214 LHAFLN 219 (224)
T ss_pred HHHHHH
Confidence 988774
No 227
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=7.6e-09 Score=106.24 Aligned_cols=153 Identities=16% Similarity=0.261 Sum_probs=107.9
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe----cCceEEEEEecCCchh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK----DEDTRISIWNLAGQHE 564 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~----~~~~~l~iWDfaGQe~ 564 (1363)
...|++++|++|.||||.+++...+ |...+. .|.|+++.... .+.++|.+||++|||.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~-----------------at~Gv~~~pl~f~tn~g~irf~~wdtagqEk 71 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYP-----------------ATLGVEVHPLLFDTNRGQIRFNVWDTAGQEK 71 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceeccc-----------------CcceeEEeeeeeecccCcEEEEeeeccccee
Confidence 4689999999999999999998866 655433 37787777653 2469999999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|-..-.-++- .++..+++||++.. .....+..|-+..... |...||++-|||.|-.. +.
T Consensus 72 ~gglrdgyyI---~~qcAiimFdVtsr----------~t~~n~~rwhrd~~rv-------~~NiPiv~cGNKvDi~~-r~ 130 (216)
T KOG0096|consen 72 KGGLRDGYYI---QGQCAIIMFDVTSR----------FTYKNVPRWHRDLVRV-------RENIPIVLCGNKVDIKA-RK 130 (216)
T ss_pred ecccccccEE---ecceeEEEeeeeeh----------hhhhcchHHHHHHHHH-------hcCCCeeeeccceeccc-cc
Confidence 9998877777 68889999999741 2236667788766553 23337999999999743 11
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.... .+.-.+.+ + =..+.+|+++..+...=|.+|..
T Consensus 131 ~k~k----~v~~~rkk--n-----l~y~~iSaksn~NfekPFl~Lar 166 (216)
T KOG0096|consen 131 VKAK----PVSFHRKK--N-----LQYYEISAKSNYNFERPFLWLAR 166 (216)
T ss_pred cccc----cceeeecc--c-----ceeEEeecccccccccchHHHhh
Confidence 1100 01111111 0 03477999999998888887765
No 228
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.85 E-value=4.6e-08 Score=103.46 Aligned_cols=162 Identities=16% Similarity=0.274 Sum_probs=105.9
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC----------
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG---------- 561 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG---------- 561 (1363)
..+.++|.++||||||+++|.+... +..++. +| -+|.-+....+.++ +.+-|..|
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~---LArtSk-----tP----GrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~ 89 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKN---LARTSK-----TP----GRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEV 89 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcc---eeecCC-----CC----CccceeEEEEecCc---EEEEeCCCcccccCCHHH
Confidence 4789999999999999999997521 111110 11 23555666656444 88999999
Q ss_pred chhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCC
Q 000665 562 QHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKIN 641 (1363)
Q Consensus 562 Qe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~ 641 (1363)
++....+-..|++.+..=...+++.|+.. .+...+.++..||....- |+++|.||+|++.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~--------~~~~~D~em~~~l~~~~i------------~~~vv~tK~DKi~ 149 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARH--------PPKDLDREMIEFLLELGI------------PVIVVLTKADKLK 149 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCC--------CCcHHHHHHHHHHHHcCC------------CeEEEEEccccCC
Confidence 55555555666773323456888899864 345556788888876533 7999999999985
Q ss_pred CCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 642 QPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 642 ~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
..... ..+..+++.+.........++.+|+.++.|++++...|...+
T Consensus 150 ~~~~~-----k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 150 KSERN-----KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred hhHHH-----HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence 43221 223444544433222222277889999999999988877643
No 229
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.85 E-value=9.9e-09 Score=106.34 Aligned_cols=149 Identities=19% Similarity=0.317 Sum_probs=92.0
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCc-------hh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQ-------HE 564 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQ-------e~ 564 (1363)
+++.++|.+++|||||.++|.+... .+++ + | -.|.-.....+.-....+.+.|++|- ++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~-----~v~n---~--p----G~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e 66 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ-----KVGN---W--P----GTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE 66 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE-----EEEE---S--T----TSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-----eecC---C--C----CCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH
Confidence 3789999999999999999997621 1111 1 1 12544555556656789999999993 22
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
-..++.+... ++.++.+.|.|++. .++. .|-+..+... .-|+++|.||+|+.....
T Consensus 67 e~v~~~~l~~--~~~D~ii~VvDa~~------------l~r~-l~l~~ql~e~---------g~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 67 ERVARDYLLS--EKPDLIIVVVDATN------------LERN-LYLTLQLLEL---------GIPVVVVLNKMDEAERKG 122 (156)
T ss_dssp HHHHHHHHHH--TSSSEEEEEEEGGG------------HHHH-HHHHHHHHHT---------TSSEEEEEETHHHHHHTT
T ss_pred HHHHHHHHhh--cCCCEEEEECCCCC------------HHHH-HHHHHHHHHc---------CCCEEEEEeCHHHHHHcC
Confidence 2333343332 26889999999863 2222 2444444432 126999999999964322
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHI 689 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L 689 (1363)
.... .+.+.++++ -+++++|++++.|+++|+++|
T Consensus 123 ~~id-----~~~Ls~~Lg------~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 123 IEID-----AEKLSERLG------VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEE------HHHHHHHHT------S-EEEEBTTTTBTHHHHHHHH
T ss_pred CEEC-----HHHHHHHhC------CCEEEEEeCCCcCHHHHHhhC
Confidence 2111 344555542 268999999999999998865
No 230
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.84 E-value=1.7e-08 Score=127.07 Aligned_cols=146 Identities=17% Similarity=0.198 Sum_probs=91.4
Q ss_pred CccccchHHHHHHHhhcC-CCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhc------cc
Q 000665 498 GQEYAGKTTLCNSISQNF-SSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSL------HD 570 (1363)
Q Consensus 498 G~~~~GKTSL~~~L~~~~-~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~t------h~ 570 (1363)
|++++|||||.++|.+.. .....| ..|.......+..++.++++||++|+..|.+. -+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~p---------------G~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~ 65 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWP---------------GVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVAR 65 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCC---------------CeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHH
Confidence 899999999999998762 111111 01222222233345567999999999888653 23
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHH
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLT 650 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~ 650 (1363)
.|+... ...+.+.|+|.++ .+. ..+|...+... ..|+++|+||+|+.+......
T Consensus 66 ~~l~~~-~aDvvI~VvDat~---------ler----~l~l~~ql~~~---------~~PiIIVlNK~Dl~~~~~i~~--- 119 (591)
T TIGR00437 66 DYLLNE-KPDLVVNVVDASN---------LER----NLYLTLQLLEL---------GIPMILALNLVDEAEKKGIRI--- 119 (591)
T ss_pred HHHhhc-CCCEEEEEecCCc---------chh----hHHHHHHHHhc---------CCCEEEEEehhHHHHhCCChh---
Confidence 344322 4688899999863 111 13444444321 236999999999854322211
Q ss_pred HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 651 VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 651 ~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
..+.+.++++ -+++++||+++.|++++++.+.+.
T Consensus 120 --d~~~L~~~lg------~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 120 --DEEKLEERLG------VPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred --hHHHHHHHcC------CCEEEEECCCCCCHHHHHHHHHHH
Confidence 1344444442 257999999999999999998764
No 231
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.83 E-value=4.3e-08 Score=108.47 Aligned_cols=164 Identities=15% Similarity=0.226 Sum_probs=92.6
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCchhhhhc---
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQHEFYSL--- 568 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQe~y~~t--- 568 (1363)
|++++|..++||||+.+.+-..........+ ..|..++..... ...+.|++||||||..|...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L-------------~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~ 67 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRL-------------EPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFN 67 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG------------------SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhcccc-------------CCcCCceEEEEecCCCcEEEEEEcCCcccccccccc
Confidence 7899999999999999999876432211222 236667766665 57889999999999876554
Q ss_pred --cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 569 --HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 569 --h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
+..-++ ...+.|.|+|+..+ +.++.-..+...+..+....|++ .|.+...|+|..... .+
T Consensus 68 ~~~~~if~---~v~~LIyV~D~qs~-------~~~~~l~~~~~~i~~l~~~sp~~-------~v~vfiHK~D~l~~~-~r 129 (232)
T PF04670_consen 68 SQREEIFS---NVGVLIYVFDAQSD-------DYDEDLAYLSDCIEALRQYSPNI-------KVFVFIHKMDLLSED-ER 129 (232)
T ss_dssp CCHHHHHC---TESEEEEEEETT-S-------TCHHHHHHHHHHHHHHHHHSTT--------EEEEEEE-CCCS-HH-HH
T ss_pred ccHHHHHh---ccCEEEEEEEcccc-------cHHHHHHHHHHHHHHHHHhCCCC-------eEEEEEeecccCCHH-HH
Confidence 344456 67889999999731 22222244444555555556655 699999999997422 22
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+......+++.+...+.-.-.-.+|.+|.-+ ..++++..+
T Consensus 130 ~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D----~Sly~A~S~ 170 (232)
T PF04670_consen 130 EEIFRDIQQRIRDELEDLGIEDITFFLTSIWD----ESLYEAWSK 170 (232)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS----THHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccceEEEeccCcC----cHHHHHHHH
Confidence 22233334444444322100012456667665 344444443
No 232
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.83 E-value=2.9e-08 Score=100.52 Aligned_cols=136 Identities=17% Similarity=0.268 Sum_probs=84.1
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC----chhhhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG----QHEFYSL 568 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG----Qe~y~~t 568 (1363)
|+|++|..|+|||||+++|.+.... ...|.-+... =.+.|+.| ...||..
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~------------------~~KTq~i~~~--------~~~IDTPGEyiE~~~~y~a 56 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR------------------YKKTQAIEYY--------DNTIDTPGEYIENPRFYHA 56 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC------------------cCccceeEec--------ccEEECChhheeCHHHHHH
Confidence 8999999999999999999976211 1123222222 12468888 2223322
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhH
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQ 648 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~ 648 (1363)
--.. .. .+++.++|.|+++.. ..+| .........|||-|.||+|+... ..+.+
T Consensus 57 Li~t--a~-dad~V~ll~dat~~~-~~~p----------------------P~fa~~f~~pvIGVITK~Dl~~~-~~~i~ 109 (143)
T PF10662_consen 57 LIVT--AQ-DADVVLLLQDATEPR-SVFP----------------------PGFASMFNKPVIGVITKIDLPSD-DANIE 109 (143)
T ss_pred HHHH--Hh-hCCEEEEEecCCCCC-ccCC----------------------chhhcccCCCEEEEEECccCccc-hhhHH
Confidence 2221 23 789999999998521 1111 11111224579999999999732 22322
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 649 LTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 649 ~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
...+.|+.. +. ..+|.+|+.++.|+++|++.|.
T Consensus 110 ---~a~~~L~~a--G~----~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 110 ---RAKKWLKNA--GV----KEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred ---HHHHHHHHc--CC----CCeEEEECCCCcCHHHHHHHHh
Confidence 233444443 22 3569999999999999998875
No 233
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.4e-08 Score=102.90 Aligned_cols=164 Identities=21% Similarity=0.258 Sum_probs=108.7
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDL 571 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~ 571 (1363)
+-++++|...|||||++.+++..|+..+-. .+| ..-.+|+|..+.+..-.+..+++||.|||+.-.+++.-
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~--------l~~-~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGG--------LNP-SKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcC--------CCH-HHeecccceeecceeeccceeEEEEcCChHHHHHHHHH
Confidence 468999999999999999999886543211 011 12245899999888766899999999999999999999
Q ss_pred ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHH
Q 000665 572 MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTV 651 (1363)
Q Consensus 572 Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~ 651 (1363)
|+. ...+.+.|+|+++.+ .+++...+...-+ ....-. ..||++.+||-|+.+. ...
T Consensus 89 yY~---~~H~ii~viDa~~~e------R~~~~~t~~~~v~---~~E~le------g~p~L~lankqd~q~~--~~~---- 144 (197)
T KOG0076|consen 89 YYW---LAHGIIYVIDATDRE------RFEESKTAFEKVV---ENEKLE------GAPVLVLANKQDLQNA--MEA---- 144 (197)
T ss_pred HHH---HhceeEEeecCCCHH------HHHHHHHHHHHHH---HHHHhc------CCchhhhcchhhhhhh--hhH----
Confidence 999 788899999998521 1222212222111 111111 2379999999998431 222
Q ss_pred HHHHHHHHHhc--cc-cCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 652 SSIQRLKDKFQ--GF-VDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 652 ~~~~~lr~~f~--~~-~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
++++.-|. .. ..-...+.+||+.+|.||++-.+.+..
T Consensus 145 ---~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~ 184 (197)
T KOG0076|consen 145 ---AELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVK 184 (197)
T ss_pred ---HHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHH
Confidence 33333332 11 111224678999999999887766654
No 234
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.82 E-value=6.1e-08 Score=124.91 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=100.3
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
..++.++|++++|||||.++|.+.... +++ + + ..|...+...+..+..++.+||++|+..|.....
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-----vgn---~----p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~ 68 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-----VGN---W----A--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISS 68 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-----cCC---C----C--CceEeeEEEEEEcCceEEEEEECCCccccccccc
Confidence 368999999999999999999865210 111 1 0 1133223333445678999999999988764311
Q ss_pred ----------cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 571 ----------LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 571 ----------~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
.|+... ..++.++|+|.++ .+ +..||...+... ..|+++|.||.|..
T Consensus 69 ~~s~~E~i~~~~l~~~-~aD~vI~VvDat~---------le----r~l~l~~ql~e~---------giPvIvVlNK~Dl~ 125 (772)
T PRK09554 69 QTSLDEQIACHYILSG-DADLLINVVDASN---------LE----RNLYLTLQLLEL---------GIPCIVALNMLDIA 125 (772)
T ss_pred cccHHHHHHHHHHhcc-CCCEEEEEecCCc---------ch----hhHHHHHHHHHc---------CCCEEEEEEchhhh
Confidence 133222 5678899999874 11 124566555431 12699999999986
Q ss_pred CCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 641 NQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 641 ~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
+..... ...+.+.++++ .+++.+|++++.|++++++.+....
T Consensus 126 ~~~~i~-----id~~~L~~~LG------~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 126 EKQNIR-----IDIDALSARLG------CPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred hccCcH-----HHHHHHHHHhC------CCEEEEEeecCCCHHHHHHHHHHhh
Confidence 332211 22455555553 2578999999999999999887643
No 235
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.80 E-value=3.2e-08 Score=119.98 Aligned_cols=174 Identities=16% Similarity=0.188 Sum_probs=93.6
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcc------eee-ccc---ccccccCccCCcceEEEEE-e------cCce
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPY------IEQ-VRT---LVNPVEQAVRPVGMKIKTL-K------DEDT 552 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t------~~~-~~~---~~~p~~~~~~T~Gi~i~~~-~------~~~~ 552 (1363)
+.+++.++|..++|||||+++|.+.+....... +.. +.. ...|.-+. ..+...... + ....
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDG--PECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCc--ccccccccccccccccccccc
Confidence 457999999999999999999975421110000 000 000 00000000 000001000 0 0246
Q ss_pred EEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEE
Q 000665 553 RISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTV 632 (1363)
Q Consensus 553 ~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vil 632 (1363)
.+.+||++||+.|....-...+ ...+.++|+|+++.. + ..++. + .+..+... +.+++++
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~---~aD~aIlVVDa~~g~----~-~~qt~-e----~l~~l~~~--------gi~~iIV 139 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAA---LMDGALLVIAANEPC----P-QPQTK-E----HLMALEII--------GIKNIVI 139 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHH---HCCEEEEEEECCCCc----c-ccchH-H----HHHHHHHc--------CCCeEEE
Confidence 8999999999999876544444 568899999997421 0 11111 2 22222221 1236899
Q ss_pred EEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 633 VLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 633 VgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
|+||+|+.... ..+ ...+++++.+........+++++|++++.|+++|++.|..
T Consensus 140 vvNK~Dl~~~~--~~~---~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~ 193 (406)
T TIGR03680 140 VQNKIDLVSKE--KAL---ENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEK 193 (406)
T ss_pred EEEccccCCHH--HHH---HHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHH
Confidence 99999996421 111 1122232222111111235789999999999998887754
No 236
>PRK10218 GTP-binding protein; Provisional
Probab=98.78 E-value=6.4e-08 Score=121.40 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=99.4
Q ss_pred eeEEecCccccchHHHHHHHhhc---CCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN---FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~---~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~ 564 (1363)
-++.++|..++|||||+.+|... +..... ....+--..+.+++.|+.+.. +..++.++++||++||..
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~-----~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE-----TQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccc-----cceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 38999999999999999999863 222110 000110111335677777653 345789999999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|......+++ .....++|+|+++. . ..+-.+|+..+... +. |+++|.||+|......
T Consensus 81 f~~~v~~~l~---~aDg~ILVVDa~~G--------~---~~qt~~~l~~a~~~--------gi-p~IVviNKiD~~~a~~ 137 (607)
T PRK10218 81 FGGEVERVMS---MVDSVLLVVDAFDG--------P---MPQTRFVTKKAFAY--------GL-KPIVVINKVDRPGARP 137 (607)
T ss_pred hHHHHHHHHH---hCCEEEEEEecccC--------c---cHHHHHHHHHHHHc--------CC-CEEEEEECcCCCCCch
Confidence 9998888888 88899999998741 1 12233444444331 12 4789999999864322
Q ss_pred hhhHHHHHHHHHHHHHhccc--c--CCCCcEEEEcCCCCCC
Q 000665 645 QDMQLTVSSIQRLKDKFQGF--V--DFYPTVFTIDARSSAS 681 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~--~--~i~~~v~~vs~~~~~~ 681 (1363)
. +.+++++..|... . ...-+++++|+.+|.+
T Consensus 138 ~------~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 138 D------WVVDQVFDLFVNLDATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred h------HHHHHHHHHHhccCccccccCCCEEEeEhhcCcc
Confidence 1 2234444444321 0 0123588999999864
No 237
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.78 E-value=5.6e-08 Score=117.82 Aligned_cols=162 Identities=16% Similarity=0.239 Sum_probs=92.3
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEE------------------E--e
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT------------------L--K 548 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~------------------~--~ 548 (1363)
.+.+++.++|..++|||||+.+|.+.+... .+ .+...|+.+.. + .
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~-~~--------------~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 71 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDR-HS--------------EELKRGITIRLGYADATIRKCPDCEEPEAYTTE 71 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeeccc-CH--------------hHHhcCcEEEecccccccccccccCcccccccc
Confidence 346899999999999999999996532110 00 00011111110 0 0
Q ss_pred ------c----CceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhc
Q 000665 549 ------D----EDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNS 618 (1363)
Q Consensus 549 ------~----~~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~ 618 (1363)
+ ....+++||++||+.|... ++++.....+.++|+|+++... ..++. +.+. ++. .
T Consensus 72 ~~~~~~~~~~~~~~~i~liDtPG~~~f~~~---~~~~~~~~D~~llVVDa~~~~~-----~~~t~-~~l~-~l~---~-- 136 (411)
T PRK04000 72 PKCPNCGSETELLRRVSFVDAPGHETLMAT---MLSGAALMDGAILVIAANEPCP-----QPQTK-EHLM-ALD---I-- 136 (411)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHH---HHHHHhhCCEEEEEEECCCCCC-----ChhHH-HHHH-HHH---H--
Confidence 0 1368999999999988763 3442114578999999974110 11111 2222 221 1
Q ss_pred hhhhhccCCCeEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 619 RRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 619 ~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...+|+++|+||+|+.+.. ... ...++++..+........+++.+|++++.|+++|++.|..
T Consensus 137 ------~~i~~iiVVlNK~Dl~~~~--~~~---~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~ 198 (411)
T PRK04000 137 ------IGIKNIVIVQNKIDLVSKE--RAL---ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEE 198 (411)
T ss_pred ------cCCCcEEEEEEeeccccch--hHH---HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 1123689999999997432 111 1123333322221111236789999999999998887754
No 238
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.78 E-value=8.3e-08 Score=121.23 Aligned_cols=156 Identities=18% Similarity=0.239 Sum_probs=93.4
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE----EEe-cCceEEEEEecCCchhhhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLK-DEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~-~~~~~l~iWDfaGQe~y~~ 567 (1363)
-+.++|..++|||||+++|.+.... .+ +++...|+.+. .+. .+...+.+||++||+.|..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~d-r~--------------~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~ 66 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNAD-RL--------------PEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLS 66 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCc-cc--------------hhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHH
Confidence 3678999999999999999853110 00 11122343332 222 2345689999999999976
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
.--.-++ ...+.++|+|+.+. ..+++. ..+..+.. .+.|+++||.||+|+.+. ...
T Consensus 67 ~m~~g~~---~~D~~lLVVda~eg------~~~qT~-----ehl~il~~--------lgi~~iIVVlNKiDlv~~--~~~ 122 (614)
T PRK10512 67 NMLAGVG---GIDHALLVVACDDG------VMAQTR-----EHLAILQL--------TGNPMLTVALTKADRVDE--ARI 122 (614)
T ss_pred HHHHHhh---cCCEEEEEEECCCC------CcHHHH-----HHHHHHHH--------cCCCeEEEEEECCccCCH--HHH
Confidence 5444455 67888999998641 111221 11222222 113457899999999632 122
Q ss_pred HHHHHHHHHHHHHhccccCC-CCcEEEEcCCCCCChhHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDF-YPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i-~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+ ...+++++.+... .+ ..++|++|+.+|.|+++|++.|.+
T Consensus 123 ~---~v~~ei~~~l~~~-~~~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 123 A---EVRRQVKAVLREY-GFAEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred H---HHHHHHHHHHHhc-CCCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 2 2233444333221 11 135899999999999999887753
No 239
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.78 E-value=9.9e-08 Score=114.22 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=99.3
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCchhh----h
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQHEF----Y 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQe~y----~ 566 (1363)
+.|.++|.++||||||+++|...... + .+.+. .|.......+. ++...+.++|++|..+- .
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~-----v-------s~~p~--TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~ 225 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPK-----V-------ADYPF--TTLVPNLGVVRVDDERSFVVADIPGLIEGASEGA 225 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCccc-----c-------cCCCC--CccCcEEEEEEeCCCcEEEEEeCCCccccccchh
Confidence 36899999999999999999865211 0 11111 12222222232 23457999999996421 1
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
.....|+.......+.+.|+|++.- +.....+.+..|++.+....+. -. ..|++||+||+|+....
T Consensus 226 ~Lg~~~l~~i~radvlL~VVD~s~~-------~~~d~~e~~~~l~~eL~~~~~~---L~-~kP~IlVlNKiDl~~~~--- 291 (390)
T PRK12298 226 GLGIRFLKHLERCRVLLHLIDIAPI-------DGSDPVENARIIINELEKYSPK---LA-EKPRWLVFNKIDLLDEE--- 291 (390)
T ss_pred hHHHHHHHHHHhCCEEEEEeccCcc-------cccChHHHHHHHHHHHHhhhhh---hc-CCCEEEEEeCCccCChH---
Confidence 1122233322267889999998621 0012235567788877763221 01 23689999999985321
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
...+.++++++.+. ....++.+||+++.++++|++.|.+..
T Consensus 292 --el~~~l~~l~~~~~----~~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 292 --EAEERAKAIVEALG----WEGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred --HHHHHHHHHHHHhC----CCCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 12223444444432 112578999999999999998887644
No 240
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.5e-09 Score=124.32 Aligned_cols=165 Identities=13% Similarity=0.085 Sum_probs=98.0
Q ss_pred EEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHHHHhcCC
Q 000665 107 VVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANS 186 (1363)
Q Consensus 107 L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~ 186 (1363)
+.+++-++.-.|+..++.--+...+|+++.|.++.++..+.. +....+++++.||||.|-|.. ...+++.+...+
T Consensus 98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp 172 (505)
T KOG3207|consen 98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLP 172 (505)
T ss_pred hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhcc
Confidence 334444455556666655444456777788888877765544 455567777888888777765 445566666677
Q ss_pred CeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCCcccE
Q 000665 187 TLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKS 266 (1363)
Q Consensus 187 ~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~L~~ 266 (1363)
+|+.|+|+.|.+..+. ++... ...+.|+.
T Consensus 173 ~Le~LNls~Nrl~~~~--------------------------------------------~s~~~-------~~l~~lK~ 201 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFI--------------------------------------------SSNTT-------LLLSHLKQ 201 (505)
T ss_pred cchhcccccccccCCc--------------------------------------------cccch-------hhhhhhhe
Confidence 7777777777532110 00000 02346778
Q ss_pred EEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhh
Q 000665 267 LDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVG 334 (1363)
Q Consensus 267 LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g 334 (1363)
|.|+.|.|+...+.. .+...++|+.|+|..|. +.+..... -...+.|++|||++|++-+..
T Consensus 202 L~l~~CGls~k~V~~---~~~~fPsl~~L~L~~N~--~~~~~~~~--~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQW---ILLTFPSLEVLYLEANE--IILIKATS--TKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred EEeccCCCCHHHHHH---HHHhCCcHHHhhhhccc--ccceecch--hhhhhHHhhccccCCcccccc
Confidence 888888887655443 34456788888888874 11111111 133467788888887766544
No 241
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.74 E-value=1.5e-07 Score=105.36 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=52.0
Q ss_pred eeEEecCccccchHHHHHHHhhcCCC-CCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc-
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSS-SKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH- 569 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~-~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th- 569 (1363)
.++.++|.+++|||||+++|.+.... ...| -.|.......+..+...+.+||++|+..+....
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~---------------~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYE---------------FTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCC---------------CccccceEEEEEECCeEEEEEECCCcccccccch
Confidence 37899999999999999999976211 0001 112222222233356789999999986543211
Q ss_pred ----c--cccccCCCCeEEEEEEeCCC
Q 000665 570 ----D--LMFPGHGSASCFLIISSLFR 590 (1363)
Q Consensus 570 ----~--~Flt~~~~~alyLLV~dl~~ 590 (1363)
+ .+++ ...+.++|+|+++
T Consensus 66 ~~~~~~l~~~~---~ad~il~V~D~t~ 89 (233)
T cd01896 66 GRGRQVIAVAR---TADLILMVLDATK 89 (233)
T ss_pred hHHHHHHHhhc---cCCEEEEEecCCc
Confidence 1 1344 6788999999874
No 242
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.74 E-value=2.6e-08 Score=118.21 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=110.9
Q ss_pred CCCceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhh
Q 000665 488 EPKSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 488 ~~~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
+...++++++|+.|+|||||+.+|.++ |... .|..- ..+.-| ..+..+.+..+|.|++-.+.-.
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~-VP~rl--~~i~IP------------advtPe~vpt~ivD~ss~~~~~ 70 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA-VPRRL--PRILIP------------ADVTPENVPTSIVDTSSDSDDR 70 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccc-ccccC--CccccC------------CccCcCcCceEEEecccccchh
Confidence 356689999999999999999999987 4321 11110 000011 1223566778899997544322
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
.-...=++ .+.+..+||..++ +.+++.--.+||..|+..-. +...-|||+||||.|........
T Consensus 71 ~~l~~Eir---kA~vi~lvyavd~---------~~T~D~ist~WLPlir~~~~----~~~~~PVILvGNK~d~~~~~~~s 134 (625)
T KOG1707|consen 71 LCLRKEIR---KADVICLVYAVDD---------ESTVDRISTKWLPLIRQLFG----DYHETPVILVGNKSDNGDNENNS 134 (625)
T ss_pred HHHHHHHh---hcCEEEEEEecCC---------hHHhhhhhhhhhhhhhcccC----CCccCCEEEEeeccCCccccccc
Confidence 22111246 7899999999863 56776777899999998432 22355899999999997544332
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
.+ .....|..+|..+ +.++.+|+++-.++.++|..-+++
T Consensus 135 ~e---~~~~pim~~f~Ei----EtciecSA~~~~n~~e~fYyaqKa 173 (625)
T KOG1707|consen 135 DE---VNTLPIMIAFAEI----ETCIECSALTLANVSELFYYAQKA 173 (625)
T ss_pred hh---HHHHHHHHHhHHH----HHHHhhhhhhhhhhHhhhhhhhhe
Confidence 12 1234455566554 567889999999999999877663
No 243
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.73 E-value=8.1e-08 Score=106.73 Aligned_cols=174 Identities=13% Similarity=0.090 Sum_probs=93.0
Q ss_pred EEecCccccchHHHHHHHhhcCCCCCCcce----------ee--cc-cccccccCccCCcceE----EEEEecCceEEEE
Q 000665 494 VFFCGQEYAGKTTLCNSISQNFSSSKLPYI----------EQ--VR-TLVNPVEQAVRPVGMK----IKTLKDEDTRISI 556 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~~~~~~~~t~----------~~--~~-~~~~p~~~~~~T~Gi~----i~~~~~~~~~l~i 556 (1363)
+.++|..++|||||+.+|...........+ +. ++ .+.......++..|+. ...+......+.+
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~l 81 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTI 81 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEE
Confidence 679999999999999999754111000000 00 00 0000011122334433 2334457789999
Q ss_pred EecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEec
Q 000665 557 WNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTH 636 (1363)
Q Consensus 557 WDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh 636 (1363)
||++|+..|....-..+. ...+.++|+|+++.. .+ ............|+ .... ...||+++|.||
T Consensus 82 iDtpG~~~~~~~~~~~~~---~~d~~i~VvDa~~~~--~~-~~~~~~~~~~~~~~-~~~~--------~~~~~iiivvNK 146 (219)
T cd01883 82 LDAPGHRDFVPNMITGAS---QADVAVLVVDARKGE--FE-AGFEKGGQTREHAL-LART--------LGVKQLIVAVNK 146 (219)
T ss_pred EECCChHHHHHHHHHHhh---hCCEEEEEEECCCCc--cc-cccccccchHHHHH-HHHH--------cCCCeEEEEEEc
Confidence 999999888765444445 688999999997521 00 00011111223332 2221 112579999999
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHhccc--cCCCCcEEEEcCCCCCChh
Q 000665 637 YDKINQPSQDMQLTVSSIQRLKDKFQGF--VDFYPTVFTIDARSSASVT 683 (1363)
Q Consensus 637 ~D~~~~~~~~~~~~~~~~~~lr~~f~~~--~~i~~~v~~vs~~~~~~i~ 683 (1363)
+|+.... .......+..+.++..+... .....+++++||.+|.|++
T Consensus 147 ~Dl~~~~-~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 147 MDDVTVN-WSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccc-ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9997321 11122223344444333221 1112358999999999986
No 244
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.72 E-value=5.5e-08 Score=109.11 Aligned_cols=140 Identities=17% Similarity=0.217 Sum_probs=88.9
Q ss_pred EEecCccccchHHHHHHHhhcCCCCCCcceeecc--cccccccCccCCcceEE----EEEecCceEEEEEecCCchhhhh
Q 000665 494 VFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVR--TLVNPVEQAVRPVGMKI----KTLKDEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~--~~~~p~~~~~~T~Gi~i----~~~~~~~~~l~iWDfaGQe~y~~ 567 (1363)
+.++|..++|||||+.+|....... ...+.+. +......+.+++.|+.+ .....++.++++||++|+..|..
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i--~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAI--RKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCc--cccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH
Confidence 6789999999999999998641110 0111100 00011112233444443 33446788999999999999988
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
....+++ ....+++|+|.++. ...+...|++.+... ..|+++|+||+|+.... .
T Consensus 80 ~~~~~l~---~aD~~IlVvd~~~g-----------~~~~~~~~~~~~~~~---------~~P~iivvNK~D~~~a~---~ 133 (237)
T cd04168 80 EVERSLS---VLDGAILVISAVEG-----------VQAQTRILWRLLRKL---------NIPTIIFVNKIDRAGAD---L 133 (237)
T ss_pred HHHHHHH---HhCeEEEEEeCCCC-----------CCHHHHHHHHHHHHc---------CCCEEEEEECccccCCC---H
Confidence 7777788 78899999998751 112335555655432 12689999999996432 2
Q ss_pred HHHHHHHHHHHHHhccc
Q 000665 648 QLTVSSIQRLKDKFQGF 664 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~ 664 (1363)
.+.+++++.+|+..
T Consensus 134 ---~~~~~~i~~~~~~~ 147 (237)
T cd04168 134 ---EKVYQEIKEKLSSD 147 (237)
T ss_pred ---HHHHHHHHHHHCCC
Confidence 24567788887653
No 245
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.72 E-value=2.9e-09 Score=108.62 Aligned_cols=164 Identities=16% Similarity=0.251 Sum_probs=113.6
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEec-CceEEEEEecCCchhhhhcc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKD-EDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~-~~~~l~iWDfaGQe~y~~th 569 (1363)
.|+.++|.-|+||||++++.... |+..+..|++. .+..++-.|++ ..+++.+||.+||+.|-.+.
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgv-------------dfalkVl~wdd~t~vRlqLwdIagQerfg~mt 92 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGV-------------DFALKVLQWDDKTIVRLQLWDIAGQERFGNMT 92 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhH-------------HHHHHHhccChHHHHHHHHhcchhhhhhcceE
Confidence 68999999999999999998876 66555554443 23345667876 47899999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
..|+. ++.+-.+|||+++ +.++ +.+..|...+.+.+.- ..+.+-|+++-+||+|.-+.. ..+
T Consensus 93 rVyyk---ea~~~~iVfdvt~------s~tf----e~~skwkqdldsk~qL--png~Pv~~vllankCd~e~~a--~~~- 154 (229)
T KOG4423|consen 93 RVYYK---EAHGAFIVFDVTR------SLTF----EPVSKWKQDLDSKLQL--PNGTPVPCVLLANKCDQEKSA--KNE- 154 (229)
T ss_pred EEEec---CCcceEEEEEccc------cccc----cHHHHHHHhccCcccC--CCCCcchheeccchhccChHh--hhh-
Confidence 99999 8999999999985 2222 5568899888774421 123344688999999984321 111
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
........+.. -++ ..-+.+|++...++++....|.+
T Consensus 155 ~~~~~d~f~ke----ngf-~gwtets~Kenkni~Ea~r~lVe 191 (229)
T KOG4423|consen 155 ATRQFDNFKKE----NGF-EGWTETSAKENKNIPEAQRELVE 191 (229)
T ss_pred hHHHHHHHHhc----cCc-cceeeeccccccChhHHHHHHHH
Confidence 11112222221 111 23488999999999887665544
No 246
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.71 E-value=2.4e-07 Score=95.84 Aligned_cols=163 Identities=18% Similarity=0.238 Sum_probs=106.5
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEec-CceEEEEEecCCchhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKD-EDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~-~~~~l~iWDfaGQe~y~~th 569 (1363)
..|+++.|+.++||||+++++..... +.+....+..........|..+++..... +...++++||.||+.|.-++
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~----v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPL----VITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhcccc----ceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 46999999999999999999987532 11111111111111223477777776654 45899999999999999999
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
...++ ..-..++++|.++ +.+. + -..-++++.++.+ +|++|..||.|+....+. ++
T Consensus 86 ~~l~~---ga~gaivlVDss~------~~~~-~----a~~ii~f~~~~~~--------ip~vVa~NK~DL~~a~pp--e~ 141 (187)
T COG2229 86 EILSR---GAVGAIVLVDSSR------PITF-H----AEEIIDFLTSRNP--------IPVVVAINKQDLFDALPP--EK 141 (187)
T ss_pred HHHhC---CcceEEEEEecCC------Ccch-H----HHHHHHHHhhccC--------CCEEEEeeccccCCCCCH--HH
Confidence 99888 6667788888775 2222 2 2444666666433 489999999999765432 21
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHI 689 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L 689 (1363)
+++.+.... ...+++.++++++.+..+....+
T Consensus 142 -------i~e~l~~~~-~~~~vi~~~a~e~~~~~~~L~~l 173 (187)
T COG2229 142 -------IREALKLEL-LSVPVIEIDATEGEGARDQLDVL 173 (187)
T ss_pred -------HHHHHHhcc-CCCceeeeecccchhHHHHHHHH
Confidence 222211110 23468889999998776555444
No 247
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.70 E-value=1.5e-07 Score=118.32 Aligned_cols=126 Identities=19% Similarity=0.198 Sum_probs=69.9
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCc-ce-eecccccccccCccCCcceEEEEEec--CceEEEEEecCCchhhhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLP-YI-EQVRTLVNPVEQAVRPVGMKIKTLKD--EDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~-t~-~~~~~~~~p~~~~~~T~Gi~i~~~~~--~~~~l~iWDfaGQe~y~~ 567 (1363)
..+.++|..++|||||+++|.+.+.....+ .+ ..+.....|........|..+..|.. ....+.+||++||+.|..
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 86 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN 86 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH
Confidence 378999999999999999998763221111 00 00000001110000000111111100 001278999999999998
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
....+++ ...++++|+|+++.. .+++. .. +..+... ..|+++|+||+|+.
T Consensus 87 ~~~~~~~---~aD~~IlVvDa~~g~------~~qt~-e~----i~~~~~~---------~vpiIvviNK~D~~ 136 (586)
T PRK04004 87 LRKRGGA---LADIAILVVDINEGF------QPQTI-EA----INILKRR---------KTPFVVAANKIDRI 136 (586)
T ss_pred HHHHhHh---hCCEEEEEEECCCCC------CHhHH-HH----HHHHHHc---------CCCEEEEEECcCCc
Confidence 8776666 688999999997521 12222 11 2222220 22599999999985
No 248
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.70 E-value=1e-07 Score=119.79 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=96.5
Q ss_pred eEEecCccccchHHHHHHHhhc---CCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN---FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~---~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y 565 (1363)
.+.++|..++|||||+.+|... +.... .+...+-...+.++..|+.+. .+..++.++++||++||+.|
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~-----~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANE-----AVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccc-----cceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH
Confidence 5889999999999999999863 22111 000011111123456676554 33457789999999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
......+++ .....++|+|+++. ...+...|+..+... ..|+++|+||+|+....
T Consensus 78 ~~ev~~~l~---~aD~alLVVDa~~G-----------~~~qT~~~l~~a~~~---------~ip~IVviNKiD~~~a~-- 132 (594)
T TIGR01394 78 GGEVERVLG---MVDGVLLLVDASEG-----------PMPQTRFVLKKALEL---------GLKPIVVINKIDRPSAR-- 132 (594)
T ss_pred HHHHHHHHH---hCCEEEEEEeCCCC-----------CcHHHHHHHHHHHHC---------CCCEEEEEECCCCCCcC--
Confidence 877777788 78899999998741 123345677766542 12579999999986432
Q ss_pred hhHHHHHHHHHHHHHhccc----cCCCCcEEEEcCCCCC
Q 000665 646 DMQLTVSSIQRLKDKFQGF----VDFYPTVFTIDARSSA 680 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~----~~i~~~v~~vs~~~~~ 680 (1363)
.+ +..++++..|... -...-+++++|++++.
T Consensus 133 -~~---~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~ 167 (594)
T TIGR01394 133 -PD---EVVDEVFDLFAELGADDEQLDFPIVYASGRAGW 167 (594)
T ss_pred -HH---HHHHHHHHHHHhhccccccccCcEEechhhcCc
Confidence 11 1223333333211 0111257889999985
No 249
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.67 E-value=5.3e-07 Score=98.13 Aligned_cols=165 Identities=13% Similarity=0.099 Sum_probs=92.6
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchhhh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
.+++.++|..++|||||+.+|........... ..........+.++..|+.+. .+..++..+.+.|++|+..|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~--~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAK--FKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhccccc--ccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHH
Confidence 46899999999999999999986511000000 000000001122334444433 344567789999999998887
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
..-..-+. ...+.++|+|+.+. .. .+....+..+.. .+.|++|+|.||+|+.. ..+.
T Consensus 80 ~~~~~~~~---~~D~~ilVvda~~g--------~~---~~~~~~~~~~~~--------~~~~~iIvviNK~D~~~-~~~~ 136 (195)
T cd01884 80 KNMITGAA---QMDGAILVVSATDG--------PM---PQTREHLLLARQ--------VGVPYIVVFLNKADMVD-DEEL 136 (195)
T ss_pred HHHHHHhh---hCCEEEEEEECCCC--------Cc---HHHHHHHHHHHH--------cCCCcEEEEEeCCCCCC-cHHH
Confidence 65544455 67889999998641 11 112223333433 12345889999999963 1111
Q ss_pred hHHHHHHHHHHHHHhcc--ccCCCCcEEEEcCCCCCChh
Q 000665 647 MQLTVSSIQRLKDKFQG--FVDFYPTVFTIDARSSASVT 683 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~--~~~i~~~v~~vs~~~~~~i~ 683 (1363)
.+. ..++++..+.. +-.-..+++++|+.+|.++.
T Consensus 137 ~~~---~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 137 LEL---VEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHH---HHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 221 22333333221 10012357889999998753
No 250
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=98.67 E-value=8.9e-09 Score=118.90 Aligned_cols=418 Identities=13% Similarity=0.035 Sum_probs=269.8
Q ss_pred ceeEEecccchhhHHHHHhhhCCccChh-hhhhHHHHHHHHHH---hhhhCCCccEEEEecCCCCHHHHHHHHHHhhcCC
Q 000665 27 NLSFFLSQPATGCHQETENSMNINIGKD-TLLYFPHLLTLLVT---AEKAHTSLKHLEFHSVEWEIEQMRILGLLLDCSS 102 (1363)
Q Consensus 27 ~isf~~~~~n~~~~~~l~~~~~~~is~~-~~~~l~~~l~~L~~---~l~~~~~L~~L~Ls~~~i~~~~~~~L~~~L~~~~ 102 (1363)
...||......+..+.+++.|-.+-+.+ ...++.+++-.|.. ++..+.....|---+.....+....+....+...
T Consensus 56 ecdf~d~lyr~ee~wdv~~iylsdd~rdlklddlSHllhkL~~ivsaley~~pf~el~a~~~r~e~ev~~sil~v~~~s~ 135 (553)
T KOG4242|consen 56 ECDFLDGLYRPEEKWDVVEIYLSDDSRDLKLDDLSHLLHKLPFIVSALEYAEPFPELAAPGERAEPEVGPSILGVPSPSA 135 (553)
T ss_pred cccccccccchhHHhHHHHHHhccccccccchhhhhcchhhhHHHhhhhhcccCccccchhhhccccccchhhccccccc
Confidence 3567777777777777777776665555 45555555544433 3333333333332223334444444444555566
Q ss_pred CccEEEEecCCCCHHHHHHHHHH--hHcCCCccEEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHH
Q 000665 103 NVKQVVFRRNKFDAECLAEISDV--VRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSK 180 (1363)
Q Consensus 103 ~L~~L~Ls~N~i~~~~~~~l~~~--L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~ 180 (1363)
.++.+.|.-+.+.......+... ...++.+++++++.|.+.+++.-.|..... -|+++.|.+++.++..++.
T Consensus 136 ~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p~~------pl~lr~c~lsskfis~l~~ 209 (553)
T KOG4242|consen 136 PLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQPGN------PLSLRVCELSSKFISKLLI 209 (553)
T ss_pred cCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCCCC------ccchhhhhhhhhHHHHhhh
Confidence 77778877776666555444333 333567889999999988877655543322 2778888888887776652
Q ss_pred HHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcC-CCCcceeeccCchhH--------
Q 000665 181 MIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLP-ENGTLRIYRLDVSGS-------- 251 (1363)
Q Consensus 181 ~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~-~~~~L~~L~Ls~~g~-------- 251 (1363)
- .....+.+++|+.|........+......+..+++++.++....-......++. ..+.|+..+++.+|+
T Consensus 210 q-sg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Eg 288 (553)
T KOG4242|consen 210 Q-SGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEG 288 (553)
T ss_pred h-hccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccc
Confidence 1 114568899999998877777788888888888999888773221111122222 445555555544332
Q ss_pred -HHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCcc--EEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCC
Q 000665 252 -CRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLK--EVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGN 328 (1363)
Q Consensus 252 -~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~--~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N 328 (1363)
.+..+....-.++ +|++..+...++....+.-.+..|.... .+|++.|...+..+ .++...-..+++|+++.|
T Consensus 289 g~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~v---leaci~g~R~q~l~~rdn 364 (553)
T KOG4242|consen 289 GGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEV---LEACIFGQRVQVLLQRDN 364 (553)
T ss_pred ccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccch---hhccccceeeeEeecccc
Confidence 2222333444567 8899999998888888777776665543 57788877765332 233344456999999999
Q ss_pred CCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCC--CCHHHHHHHHHccc--cCcceEEEEecCCCCCCHHHHHH
Q 000665 329 WFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTK--IGRDGIAAILQMLT--TNETVTQLGIYDDQSLRPDDFVR 404 (1363)
Q Consensus 329 ~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~--i~~~g~~~L~~~L~--~~~~L~~L~Ls~N~~i~~~gl~~ 404 (1363)
++...|...+ .+ ..+..++.++++++ +. +-..+..+...... .-.-+..+.++.| ... .++..
T Consensus 365 nldgeg~~vg--k~--------~~s~s~r~l~agrs-~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~-~lk-a~l~s 431 (553)
T KOG4242|consen 365 NLDGEGGAVG--KR--------KQSKSGRILKAGRS-GDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPG-PLK-AGLES 431 (553)
T ss_pred cccccccccc--ce--------eecccccccccccc-CCceeccccccchhhhhhhcccccccCcccCCC-ccc-ccHHH
Confidence 9998887665 22 57888999988763 33 22222211111111 2223788888888 444 34666
Q ss_pred HHHHHhhCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCCCCchHHHHHHHhcc
Q 000665 405 IFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNSGKADGIYQRLGQK 471 (1363)
Q Consensus 405 L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~~g~~~~i~~~l~~~ 471 (1363)
+...+...+++..|+++||. .++.+...++.+++.|..++.+..+.|..++.| ...+..+...|
T Consensus 432 ~in~l~stqtl~kldisgn~--mgd~gap~lpkalq~n~rlr~ipds~n~p~~~g-l~p~~~~~p~n 495 (553)
T KOG4242|consen 432 AINKLLSTQTLAKLDISGNG--MGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPG-LGPRNEERPLN 495 (553)
T ss_pred HHHhhccCcccccccccCCC--cccCCCCcCccccCCCCccCCCCCCCCCccccc-cchhhhhcccc
Confidence 77777789999999999998 677778889999999999999999999999988 55665554444
No 251
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.67 E-value=1.1e-07 Score=115.42 Aligned_cols=170 Identities=13% Similarity=0.138 Sum_probs=94.3
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCccee----------ec-----ccccccccCccCCcceEEE----EEecCce
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIE----------QV-----RTLVNPVEQAVRPVGMKIK----TLKDEDT 552 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~----------~~-----~~~~~p~~~~~~T~Gi~i~----~~~~~~~ 552 (1363)
++++++|..++|||||+.+|...........++ .. -.++-...+.++..|+.+. .+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999997542111110000 00 0011111223444554433 2334677
Q ss_pred EEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEE
Q 000665 553 RISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTV 632 (1363)
Q Consensus 553 ~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vil 632 (1363)
++.+||++||+.|...-..-++ ...+.++|+|+.+.. ..++. ..|.- +.. .+.|++++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~---~aD~allVVda~~G~------~~qt~----~~~~~-~~~--------~~~~~iiv 138 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGAS---TADLAVLLVDARKGV------LEQTR----RHSYI-ASL--------LGIRHVVL 138 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHh---hCCEEEEEEECCCCC------ccccH----HHHHH-HHH--------cCCCcEEE
Confidence 9999999999998654344455 788899999987421 11111 12221 111 11346999
Q ss_pred EEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHH
Q 000665 633 VLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLT 686 (1363)
Q Consensus 633 VgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~ 686 (1363)
|.||+|+........+++.+.+..+...+. + . ..+++++|+.+|.|++.+.
T Consensus 139 viNK~D~~~~~~~~~~~i~~~~~~~~~~~~-~-~-~~~iipiSA~~g~ni~~~~ 189 (406)
T TIGR02034 139 AVNKMDLVDYDEEVFENIKKDYLAFAEQLG-F-R-DVTFIPLSALKGDNVVSRS 189 (406)
T ss_pred EEEecccccchHHHHHHHHHHHHHHHHHcC-C-C-CccEEEeecccCCCCcccc
Confidence 999999974322222222222222222221 1 1 1257899999999987643
No 252
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.65 E-value=6.7e-07 Score=105.39 Aligned_cols=154 Identities=15% Similarity=0.180 Sum_probs=100.5
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhh---
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYS--- 567 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~--- 567 (1363)
-+|++++|.|+||||||.|+|.+. .+.++++++++ |.-+--..+.-+.+.+++.||||-.+--.
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~-----------d~AIVTdI~GT--TRDviee~i~i~G~pv~l~DTAGiRet~d~VE 283 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGR-----------DRAIVTDIAGT--TRDVIEEDINLNGIPVRLVDTAGIRETDDVVE 283 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcC-----------CceEecCCCCC--ccceEEEEEEECCEEEEEEecCCcccCccHHH
Confidence 479999999999999999999976 22334444444 33333444556889999999999543111
Q ss_pred ---cccc--ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 568 ---LHDL--MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 568 ---th~~--Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
+-+. -+. .+++.++|+|.+.. .+..+...+| . .+. ..|+++|.||.|+...
T Consensus 284 ~iGIeRs~~~i~---~ADlvL~v~D~~~~---------~~~~d~~~~~--~----~~~------~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 284 RIGIERAKKAIE---EADLVLFVLDASQP---------LDKEDLALIE--L----LPK------KKPIIVVLNKADLVSK 339 (454)
T ss_pred HHHHHHHHHHHH---hCCEEEEEEeCCCC---------CchhhHHHHH--h----ccc------CCCEEEEEechhcccc
Confidence 1111 133 78999999999841 1112333455 1 111 2269999999999754
Q ss_pred CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHHH
Q 000665 643 PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRTI 696 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~i 696 (1363)
... ..+ +... ..+++.+|++++.|++.|.++|.+.....
T Consensus 340 ~~~---------~~~--~~~~----~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 340 IEL---------ESE--KLAN----GDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccc---------chh--hccC----CCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 321 111 1111 12478899999999999999998866554
No 253
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.64 E-value=1.8e-07 Score=103.63 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=74.9
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE------EEe--------cCceEEEEEe
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK------TLK--------DEDTRISIWN 558 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~------~~~--------~~~~~l~iWD 558 (1363)
.+.++|..+.|||||+.+|............+..+.. .....++..|+.+. .|. ++...+++||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~--D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiD 79 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYM--DSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLID 79 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeec--cCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEEC
Confidence 4789999999999999999865211000000111100 00112233444432 233 2378999999
Q ss_pred cCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccC
Q 000665 559 LAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYD 638 (1363)
Q Consensus 559 faGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D 638 (1363)
++||+.|...-...+. ....+++|+|+++.. ..++ ...++.... . ..|+++|+||+|
T Consensus 80 TPG~~~f~~~~~~~l~---~aD~~ilVvD~~~g~------~~~t-----~~~l~~~~~---~------~~p~ilviNKiD 136 (222)
T cd01885 80 SPGHVDFSSEVTAALR---LCDGALVVVDAVEGV------CVQT-----ETVLRQALK---E------RVKPVLVINKID 136 (222)
T ss_pred CCCccccHHHHHHHHH---hcCeeEEEEECCCCC------CHHH-----HHHHHHHHH---c------CCCEEEEEECCC
Confidence 9999999988888888 888999999997521 1111 122222221 1 125899999999
Q ss_pred CC
Q 000665 639 KI 640 (1363)
Q Consensus 639 ~~ 640 (1363)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 85
No 254
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.59 E-value=2.4e-07 Score=114.11 Aligned_cols=171 Identities=13% Similarity=0.137 Sum_probs=96.2
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcce----------eecc-----cccccccCccCCcceEEEE----Eec
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYI----------EQVR-----TLVNPVEQAVRPVGMKIKT----LKD 549 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~----------~~~~-----~~~~p~~~~~~T~Gi~i~~----~~~ 549 (1363)
...+++.++|..++|||||+.+|...........+ +..+ .+.....+.++..|+.+.. +..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34589999999999999999999865211111000 0000 0111111234445554443 335
Q ss_pred CceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCe
Q 000665 550 EDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPN 629 (1363)
Q Consensus 550 ~~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~ 629 (1363)
+..++.+||++||+.|...-..-+. ...+.++|+|+.+.. ...+. ..|. .+... +.++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~---~aD~allVVDa~~G~------~~qt~----~~~~-l~~~l--------g~~~ 162 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGAS---TCDLAILLIDARKGV------LDQTR----RHSF-IATLL--------GIKH 162 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHh---hCCEEEEEEECCCCc------cccch----HHHH-HHHHh--------CCCc
Confidence 6778999999999988643322245 678999999987421 11111 1121 11110 1246
Q ss_pred EEEEEeccCCCCCCchhhHHHHHHHHHHHH---HhccccCCCCcEEEEcCCCCCChhHHH
Q 000665 630 VTVVLTHYDKINQPSQDMQLTVSSIQRLKD---KFQGFVDFYPTVFTIDARSSASVTKLT 686 (1363)
Q Consensus 630 VilVgTh~D~~~~~~~~~~~~~~~~~~lr~---~f~~~~~i~~~v~~vs~~~~~~i~~L~ 686 (1363)
+|+|.||+|+......... +..++++. .+... -...++++|+.+|.|++.+.
T Consensus 163 iIvvvNKiD~~~~~~~~~~---~i~~~l~~~~~~~~~~--~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 163 LVVAVNKMDLVDYSEEVFE---RIREDYLTFAEQLPGN--LDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred eEEEEEeeccccchhHHHH---HHHHHHHHHHHhcCCC--CCceEEEEEeecCCCccccc
Confidence 8999999999743222222 22333322 22111 12468999999999998754
No 255
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.57 E-value=1.2e-08 Score=115.60 Aligned_cols=131 Identities=8% Similarity=0.113 Sum_probs=82.1
Q ss_pred CCccEEEEecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccE-EEeecCCCCHHHHHHHHH
Q 000665 74 TSLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKE-VMFTESGIKNAGASLLAS 152 (1363)
Q Consensus 74 ~~L~~L~Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~-L~Ls~n~I~~~g~~~L~~ 152 (1363)
.....|.|..|.|+...- .+++.+++|+.||||+|+|+..+..+|... .++.+ +..++|+|++.....
T Consensus 67 ~~tveirLdqN~I~~iP~----~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL----~~l~~Lvlyg~NkI~~l~k~~--- 135 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPP----GAFKTLHRLRRLDLSKNNISFIAPDAFKGL----ASLLSLVLYGNNKITDLPKGA--- 135 (498)
T ss_pred CcceEEEeccCCcccCCh----hhccchhhhceecccccchhhcChHhhhhh----HhhhHHHhhcCCchhhhhhhH---
Confidence 445678888886543222 345778889999999999988877766552 24444 455668888654433
Q ss_pred HhccCCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHH-HHHhCCCceEEEccCCC
Q 000665 153 ALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISA-VLARNRAMEVHVWSGEN 224 (1363)
Q Consensus 153 ~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~-~l~~~~~L~~L~Ls~n~ 224 (1363)
+....+|+.|.+.-|++.-. ..+++...++|..|.+.+|.+.. ++. .+....+++++.+..|.
T Consensus 136 -F~gL~slqrLllNan~i~Ci----r~~al~dL~~l~lLslyDn~~q~----i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 136 -FGGLSSLQRLLLNANHINCI----RQDALRDLPSLSLLSLYDNKIQS----ICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred -hhhHHHHHHHhcChhhhcch----hHHHHHHhhhcchhcccchhhhh----hccccccchhccchHhhhcCc
Confidence 33445678888887777653 33445556778888888875321 222 33444556666666553
No 256
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.56 E-value=3.9e-07 Score=104.08 Aligned_cols=139 Identities=11% Similarity=0.136 Sum_probs=83.0
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecc------cccccccCccCCcceE----EEEEecCceEEEEEecCCc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVR------TLVNPVEQAVRPVGMK----IKTLKDEDTRISIWNLAGQ 562 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~------~~~~p~~~~~~T~Gi~----i~~~~~~~~~l~iWDfaGQ 562 (1363)
.+.++|..++|||||+++|...... ....+.+. +.+....+.++..|+. ...+..+..++++||++|+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~--i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGA--IREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCC--cccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 6889999999999999999854111 01111110 0000111112223333 3345567899999999999
Q ss_pred hhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 563 HEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 563 e~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
..|.......+. .....++|+|+++. . +.+...|++..... ..|+++|+||+|+...
T Consensus 82 ~df~~~~~~~l~---~aD~~IlVvda~~g--------~---~~~~~~i~~~~~~~---------~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDFSEDTYRTLT---AVDSAVMVIDAAKG--------V---EPQTRKLFEVCRLR---------GIPIITFINKLDREGR 138 (267)
T ss_pred hHHHHHHHHHHH---HCCEEEEEEECCCC--------c---cHHHHHHHHHHHhc---------CCCEEEEEECCccCCC
Confidence 998875455567 67888999998741 1 12233455544331 2269999999998543
Q ss_pred CchhhHHHHHHHHHHHHHhc
Q 000665 643 PSQDMQLTVSSIQRLKDKFQ 662 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~ 662 (1363)
.. . ..++.+++.|+
T Consensus 139 ~~---~---~~~~~l~~~l~ 152 (267)
T cd04169 139 DP---L---ELLDEIEEELG 152 (267)
T ss_pred CH---H---HHHHHHHHHHC
Confidence 21 1 23456666664
No 257
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.56 E-value=1e-06 Score=106.68 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=87.0
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchh
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~ 564 (1363)
.+.+++.++|..++|||||+.+|.+........... .....-..+.++..|+.+. .+..++..+.+||++||+.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~--~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAAR--AYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhccccc--ccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 346899999999999999999997431100000000 0000000011223343332 3445677899999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|...--.-.+ ...+.++|+|+.+.. ..++ ...+..+... +.|++|+|.||+|+....
T Consensus 88 f~~~~~~~~~---~~D~~ilVvda~~g~------~~qt-----~e~l~~~~~~--------gi~~iIvvvNK~Dl~~~~- 144 (394)
T TIGR00485 88 YVKNMITGAA---QMDGAILVVSATDGP------MPQT-----REHILLARQV--------GVPYIVVFLNKCDMVDDE- 144 (394)
T ss_pred HHHHHHHHHh---hCCEEEEEEECCCCC------cHHH-----HHHHHHHHHc--------CCCEEEEEEEecccCCHH-
Confidence 8754433233 567899999987411 1111 1222223221 235677899999996421
Q ss_pred hhhHHHHHHHHHHHHHhcccc--CCCCcEEEEcCCCCC
Q 000665 645 QDMQLTVSSIQRLKDKFQGFV--DFYPTVFTIDARSSA 680 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~--~i~~~v~~vs~~~~~ 680 (1363)
+..+.. .++++..+..+- .-.-+++++|+.++.
T Consensus 145 ~~~~~~---~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 145 ELLELV---EMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHH---HHHHHHHHHhcCCCccCccEEECcccccc
Confidence 112211 223332222110 001257889999874
No 258
>COG1159 Era GTPase [General function prediction only]
Probab=98.56 E-value=7.1e-07 Score=99.62 Aligned_cols=159 Identities=21% Similarity=0.230 Sum_probs=97.3
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC-chhhhhcc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG-QHEFYSLH 569 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG-Qe~y~~th 569 (1363)
.-.+.++|.++||||||+|+|.+..... ++|.+++.|- .-..-.+.++..+.+.||.| |..-+..-
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisI-----------vS~k~QTTR~--~I~GI~t~~~~QiIfvDTPGih~pk~~l~ 72 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISI-----------VSPKPQTTRN--RIRGIVTTDNAQIIFVDTPGIHKPKHALG 72 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEe-----------ecCCcchhhh--heeEEEEcCCceEEEEeCCCCCCcchHHH
Confidence 4578999999999999999999873221 1222222221 11112234688999999999 33333333
Q ss_pred ccccc----cCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 570 DLMFP----GHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 570 ~~Flt----~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
+++.+ +.+..++.++|.|+.+.. . . ...+-++.++. ++ -||+++.||+|..+....
T Consensus 73 ~~m~~~a~~sl~dvDlilfvvd~~~~~------~--~---~d~~il~~lk~-~~--------~pvil~iNKID~~~~~~~ 132 (298)
T COG1159 73 ELMNKAARSALKDVDLILFVVDADEGW------G--P---GDEFILEQLKK-TK--------TPVILVVNKIDKVKPKTV 132 (298)
T ss_pred HHHHHHHHHHhccCcEEEEEEeccccC------C--c---cHHHHHHHHhh-cC--------CCeEEEEEccccCCcHHH
Confidence 33222 334789999999987521 1 1 11223444444 11 169999999999754321
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..+..+.++..+ ++ ..++++|+.+|.+++.|.+.+..
T Consensus 133 ----l~~~~~~~~~~~----~f-~~ivpiSA~~g~n~~~L~~~i~~ 169 (298)
T COG1159 133 ----LLKLIAFLKKLL----PF-KEIVPISALKGDNVDTLLEIIKE 169 (298)
T ss_pred ----HHHHHHHHHhhC----Cc-ceEEEeeccccCCHHHHHHHHHH
Confidence 123334444332 22 26899999999999998877654
No 259
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.52 E-value=8.4e-10 Score=111.42 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=103.6
Q ss_pred ccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEE
Q 000665 245 RLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLY 324 (1363)
Q Consensus 245 ~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~Ld 324 (1363)
.++.+.+..++..+..+.+|+.|++++|+|.+ +...+++.+.|+.|+++-|.+. .++.+++..+.|+.||
T Consensus 39 tLSHNKl~~vppnia~l~nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~-----~lprgfgs~p~levld 108 (264)
T KOG0617|consen 39 TLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLN-----ILPRGFGSFPALEVLD 108 (264)
T ss_pred hcccCceeecCCcHHHhhhhhhhhcccchhhh-----cChhhhhchhhhheecchhhhh-----cCccccCCCchhhhhh
Confidence 33444444455555666788899999998866 5556677788889998888876 3677788888899999
Q ss_pred ccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHH
Q 000665 325 LHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVR 404 (1363)
Q Consensus 325 Ls~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~ 404 (1363)
|+.|+++.....--.- ..++|+-|.|+ .|.+ ..+...++..++|+.|.+.+|. +..
T Consensus 109 ltynnl~e~~lpgnff-----------~m~tlralyl~--dndf-----e~lp~dvg~lt~lqil~lrdnd------ll~ 164 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFF-----------YMTTLRALYLG--DNDF-----EILPPDVGKLTNLQILSLRDND------LLS 164 (264)
T ss_pred ccccccccccCCcchh-----------HHHHHHHHHhc--CCCc-----ccCChhhhhhcceeEEeeccCc------hhh
Confidence 9998887654221110 12456666665 3443 3344556777889999888884 677
Q ss_pred HHHHHhhCCCccEEEeecCC
Q 000665 405 IFKSLQKNASLRQLSLQGCK 424 (1363)
Q Consensus 405 L~~~L~~~~~L~~L~Ls~N~ 424 (1363)
++..++.++.|+.|.+.||.
T Consensus 165 lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred CcHHHHHHHHHHHHhcccce
Confidence 88999999999999999997
No 260
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.51 E-value=6.1e-07 Score=105.47 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=94.1
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhh------
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFY------ 566 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~------ 566 (1363)
.+.++|.++||||||.|+|.+.... .+. ..++..|..-.....|. ...|.+.||||-+.--
T Consensus 5 ~VAIVGRPNVGKSTLFNRL~g~r~A----IV~-------D~pGvTRDr~y~~~~~~--~~~f~lIDTgGl~~~~~~~l~~ 71 (444)
T COG1160 5 VVAIVGRPNVGKSTLFNRLTGRRIA----IVS-------DTPGVTRDRIYGDAEWL--GREFILIDTGGLDDGDEDELQE 71 (444)
T ss_pred EEEEECCCCCcHHHHHHHHhCCeee----Eee-------cCCCCccCCccceeEEc--CceEEEEECCCCCcCCchHHHH
Confidence 6899999999999999999976211 011 11122222222233443 3459999999955322
Q ss_pred ----hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 567 ----SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 567 ----~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
.+... +. .+++.|+|+|... .....++.+..||+ +. ..||++|.||+|....
T Consensus 72 ~i~~Qa~~A-i~---eADvilfvVD~~~--------Git~~D~~ia~~Lr--~~----------~kpviLvvNK~D~~~~ 127 (444)
T COG1160 72 LIREQALIA-IE---EADVILFVVDGRE--------GITPADEEIAKILR--RS----------KKPVILVVNKIDNLKA 127 (444)
T ss_pred HHHHHHHHH-HH---hCCEEEEEEeCCC--------CCCHHHHHHHHHHH--hc----------CCCEEEEEEcccCchh
Confidence 12222 33 7899999999863 23455678888988 22 1279999999998521
Q ss_pred CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 643 PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
+ .... .|.+ +.+ ...+.||+..|.|+.+|.+.+.+.
T Consensus 128 --e------~~~~----efys-lG~-g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 128 --E------ELAY----EFYS-LGF-GEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred --h------hhHH----HHHh-cCC-CCceEeehhhccCHHHHHHHHHhh
Confidence 1 0111 2211 111 345889999999999998887764
No 261
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.47 E-value=1.5e-06 Score=106.26 Aligned_cols=179 Identities=12% Similarity=0.118 Sum_probs=102.9
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCccee------------ecc-cccccccCccCCcceEEEE----EecCc
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIE------------QVR-TLVNPVEQAVRPVGMKIKT----LKDED 551 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~------------~~~-~~~~p~~~~~~T~Gi~i~~----~~~~~ 551 (1363)
.+.+.+.++|..++|||||+-+|...........+. .+. .+.....+.++..|+.+.. +..+.
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 356789999999999999999997541110000000 000 0111112334555655443 34567
Q ss_pred eEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEE
Q 000665 552 TRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVT 631 (1363)
Q Consensus 552 ~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vi 631 (1363)
..+++.|++||+.|...-...++ .....|||+|+++. ..+. ..........+|. .+.. -+.|++|
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~---~aD~aIlVVda~~G--~~e~-g~~~~~qT~eh~~-~~~~--------~gi~~iI 149 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTS---QADCAVLIIDSTTG--GFEA-GISKDGQTREHAL-LAFT--------LGVKQMI 149 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhh---hccEEEEEEEcccC--ceec-ccCCCchHHHHHH-HHHH--------cCCCcEE
Confidence 89999999999999988888788 78899999999741 0000 0000001122332 2322 1235689
Q ss_pred EEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCC---CCcEEEEcCCCCCChhH
Q 000665 632 VVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDF---YPTVFTIDARSSASVTK 684 (1363)
Q Consensus 632 lVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i---~~~v~~vs~~~~~~i~~ 684 (1363)
+|.||+|+.. .....+...+..++++..+... .+ .-+++++|+.+|.|+.+
T Consensus 150 V~vNKmD~~~-~~~~~~~~~~i~~ei~~~l~~~-g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 150 CCCNKMDATT-PKYSKARYDEIVKEVSSYLKKV-GYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEEEcccCCc-hhhhHHHHHHHHHHHHHHHHHc-CCCcccceEEEEeccccccccc
Confidence 9999999862 1122233334455555444321 11 12578999999998754
No 262
>PRK12735 elongation factor Tu; Reviewed
Probab=98.47 E-value=2.1e-06 Score=103.91 Aligned_cols=168 Identities=13% Similarity=0.097 Sum_probs=90.9
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchh
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~ 564 (1363)
.+.+++.++|..++|||||+++|.+............. ......+.++..|+.+. .+..++..+.++|++||+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~--~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAY--DQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchh--hhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 34689999999999999999999863110000000000 00011122344565443 2445667899999999998
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|...-..-+. ...+.++|+|+.+.. . .+....+..+.. .+.|.+++|.||+|+... .
T Consensus 88 f~~~~~~~~~---~aD~~llVvda~~g~------~-----~qt~e~l~~~~~--------~gi~~iivvvNK~Dl~~~-~ 144 (396)
T PRK12735 88 YVKNMITGAA---QMDGAILVVSAADGP------M-----PQTREHILLARQ--------VGVPYIVVFLNKCDMVDD-E 144 (396)
T ss_pred HHHHHHhhhc---cCCEEEEEEECCCCC------c-----hhHHHHHHHHHH--------cCCCeEEEEEEecCCcch-H
Confidence 8755444444 678999999987411 1 111122233332 113446678999999642 1
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCCh
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASV 682 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i 682 (1363)
+..+.....++.+-..+... .-.-+++++|+.++.+.
T Consensus 145 ~~~~~~~~ei~~~l~~~~~~-~~~~~ii~~Sa~~g~n~ 181 (396)
T PRK12735 145 ELLELVEMEVRELLSKYDFP-GDDTPIIRGSALKALEG 181 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCC-cCceeEEecchhccccC
Confidence 11222221222222222110 00125688999998653
No 263
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.46 E-value=1.2e-06 Score=100.09 Aligned_cols=153 Identities=15% Similarity=0.102 Sum_probs=90.4
Q ss_pred EEecCccccchHHHHHHHhhcCCCCCCcceeecc--cccccccCccCCcceEEEE----EecCceEEEEEecCCchhhhh
Q 000665 494 VFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVR--TLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~--~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~y~~ 567 (1363)
+.++|..++|||||+++|....... ..++.+. +......+.++..|+.+.. +..++.++++||++|+..|..
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~--~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~ 79 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRI--HKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTI 79 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCC--cccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHH
Confidence 6799999999999999997531110 0111111 0111111233455655542 334678999999999998887
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
.....+. ...+.++|+|..+.. .. +-...++.+... ..|+++|.||+|+.... .
T Consensus 80 ~~~~~l~---~aD~ailVVDa~~g~--------~~---~t~~~~~~~~~~---------~~p~ivviNK~D~~~a~---~ 133 (270)
T cd01886 80 EVERSLR---VLDGAVAVFDAVAGV--------EP---QTETVWRQADRY---------NVPRIAFVNKMDRTGAD---F 133 (270)
T ss_pred HHHHHHH---HcCEEEEEEECCCCC--------CH---HHHHHHHHHHHc---------CCCEEEEEECCCCCCCC---H
Confidence 7666777 677888999987421 11 112233333321 12588999999986422 2
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCC
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSS 679 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~ 679 (1363)
+ ...+.++..++.. ..+..+++|+..+
T Consensus 134 ~---~~~~~l~~~l~~~--~~~~~~Pisa~~~ 160 (270)
T cd01886 134 F---RVVEQIREKLGAN--PVPLQLPIGEEDD 160 (270)
T ss_pred H---HHHHHHHHHhCCC--ceEEEeccccCCC
Confidence 2 3456666666432 2344566776543
No 264
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.43 E-value=4e-06 Score=92.74 Aligned_cols=178 Identities=17% Similarity=0.262 Sum_probs=103.1
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC------c
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG------Q 562 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG------Q 562 (1363)
...+.+.++|.++||||||.+.+.+..-. ++ ......|..-.....+.+...+.++|+.| +
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~---~v----------S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~ 136 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVS---AV----------SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH 136 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccc---cc----------cccccceeeeeeEEEecCceEEEEecCCcccccchh
Confidence 45689999999999999999999987211 00 00111122211222345778999999999 2
Q ss_pred hhhhhccccccc----cCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccC
Q 000665 563 HEFYSLHDLMFP----GHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYD 638 (1363)
Q Consensus 563 e~y~~th~~Flt----~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D 638 (1363)
..+|-.-. |+. ....+++.++|+|+++ .|-+-+ -++ |+.++... .-|-++|.||.|
T Consensus 137 r~~~l~~s-~lq~~~~a~q~AD~vvVv~Das~---tr~~l~-----p~v---l~~l~~ys--------~ips~lvmnkid 196 (379)
T KOG1423|consen 137 RRHHLMMS-VLQNPRDAAQNADCVVVVVDASA---TRTPLH-----PRV---LHMLEEYS--------KIPSILVMNKID 196 (379)
T ss_pred hhHHHHHH-hhhCHHHHHhhCCEEEEEEeccC---CcCccC-----hHH---HHHHHHHh--------cCCceeeccchh
Confidence 22222211 222 1115788999999984 111111 122 33333311 114699999999
Q ss_pred CCCCCchhhH--------HHHHHHHHHHHHhccccC---------C--CCcEEEEcCCCCCChhHHHHHHHHHHHHHHhh
Q 000665 639 KINQPSQDMQ--------LTVSSIQRLKDKFQGFVD---------F--YPTVFTIDARSSASVTKLTHHIRKTSRTILQR 699 (1363)
Q Consensus 639 ~~~~~~~~~~--------~~~~~~~~lr~~f~~~~~---------i--~~~v~~vs~~~~~~i~~L~~~L~~~~~~i~~~ 699 (1363)
.......-.. +.....-+++++|..... . ...||.||+.+|.||++|+++|.. +.
T Consensus 197 ~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLms------qa 270 (379)
T KOG1423|consen 197 KLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMS------QA 270 (379)
T ss_pred cchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHh------cC
Confidence 8643221111 111223456666655421 1 245999999999999999998865 44
Q ss_pred cCchHH
Q 000665 700 VPRVYQ 705 (1363)
Q Consensus 700 ~P~~~~ 705 (1363)
.|.-|.
T Consensus 271 ~~gpW~ 276 (379)
T KOG1423|consen 271 PPGPWK 276 (379)
T ss_pred CCCCCC
Confidence 555553
No 265
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.43 E-value=2.3e-09 Score=108.38 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=122.4
Q ss_pred hcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHH
Q 000665 258 LGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEH 337 (1363)
Q Consensus 258 L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~ 337 (1363)
+-..++++.|-||+|+++... ..+....+|+.|++++|+|.+ ++..+...+.|+.|+++-|.+.-..
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vp-----pnia~l~nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~~lp--- 95 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVP-----PNIAELKNLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLNILP--- 95 (264)
T ss_pred ccchhhhhhhhcccCceeecC-----CcHHHhhhhhhhhcccchhhh-----cChhhhhchhhhheecchhhhhcCc---
Confidence 344567889999999997633 234445789999999999985 6666788899999999988865321
Q ss_pred HHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccE
Q 000665 338 LLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQ 417 (1363)
Q Consensus 338 L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~ 417 (1363)
..+ ...+.|+.|||. +|++.... +...+--+++|+.|.|++|. +..++..++++++|+.
T Consensus 96 --rgf--------gs~p~levldlt--ynnl~e~~---lpgnff~m~tlralyl~dnd------fe~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 96 --RGF--------GSFPALEVLDLT--YNNLNENS---LPGNFFYMTTLRALYLGDND------FEILPPDVGKLTNLQI 154 (264)
T ss_pred --ccc--------CCCchhhhhhcc--cccccccc---CCcchhHHHHHHHHHhcCCC------cccCChhhhhhcceeE
Confidence 111 345678999998 77777642 22233344678888899983 5678999999999999
Q ss_pred EEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCCCC
Q 000665 418 LSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNSG 459 (1363)
Q Consensus 418 L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~~g 459 (1363)
|.+..|. +-.++..++.+..|++|++.+|.++..+
T Consensus 155 l~lrdnd-------ll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 155 LSLRDND-------LLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred EeeccCc-------hhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 9999887 3457888888899999999999988754
No 266
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.43 E-value=1.3e-06 Score=112.04 Aligned_cols=170 Identities=12% Similarity=0.121 Sum_probs=93.1
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcc----------eeeccc-----ccccccCccCCcceEEE----EEecC
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPY----------IEQVRT-----LVNPVEQAVRPVGMKIK----TLKDE 550 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t----------~~~~~~-----~~~p~~~~~~T~Gi~i~----~~~~~ 550 (1363)
..+++.++|..++|||||+.+|........... .+.++. +.....+.++..|+.+. .+..+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 457899999999999999999986521111000 000000 00011122333444433 33456
Q ss_pred ceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeE
Q 000665 551 DTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNV 630 (1363)
Q Consensus 551 ~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~V 630 (1363)
+.++.++|++|++.|......-+. ...+.++|+|+.+.. ..++. ....++... +.+++
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~---~aD~~llVvda~~g~------~~~t~--e~~~~~~~~-----------~~~~i 160 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGAS---TADLAIILVDARKGV------LTQTR--RHSFIASLL-----------GIRHV 160 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHH---hCCEEEEEEECCCCc------cccCH--HHHHHHHHh-----------CCCeE
Confidence 778899999999988654333344 678899999986421 11111 111122111 12469
Q ss_pred EEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCC-CcEEEEcCCCCCChhHH
Q 000665 631 TVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFY-PTVFTIDARSSASVTKL 685 (1363)
Q Consensus 631 ilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~-~~v~~vs~~~~~~i~~L 685 (1363)
++|.||+|++.......+ ....+++..+.. ..+. ..++++||.+|.|+++.
T Consensus 161 ivvvNK~D~~~~~~~~~~---~i~~~i~~~~~~-~~~~~~~iipiSA~~g~ni~~~ 212 (632)
T PRK05506 161 VLAVNKMDLVDYDQEVFD---EIVADYRAFAAK-LGLHDVTFIPISALKGDNVVTR 212 (632)
T ss_pred EEEEEecccccchhHHHH---HHHHHHHHHHHH-cCCCCccEEEEecccCCCcccc
Confidence 999999999742222222 222333321111 1111 25789999999998753
No 267
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.42 E-value=3e-06 Score=95.38 Aligned_cols=166 Identities=19% Similarity=0.285 Sum_probs=103.8
Q ss_pred ccCCCCCCCCceeEEecCccccchHHHHHHHhhcCCC-CCCcceeecccccccccCccCCcceEEEEEecCceEEEEEec
Q 000665 481 LKDMPLTEPKSCRVFFCGQEYAGKTTLCNSISQNFSS-SKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNL 559 (1363)
Q Consensus 481 lk~ip~~~~~~~kl~~vG~~~~GKTSL~~~L~~~~~~-~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDf 559 (1363)
++.+|.--+..--++++|.++||||||++++.+.... ..+ |. .|.||.+..+..+..++.+.||
T Consensus 158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~Y-----------PF----TTK~i~vGhfe~~~~R~QvIDT 222 (346)
T COG1084 158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPY-----------PF----TTKGIHVGHFERGYLRIQVIDT 222 (346)
T ss_pred HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCC-----------Cc----cccceeEeeeecCCceEEEecC
Confidence 3455544444557899999999999999999976221 112 22 3899999999989999999999
Q ss_pred CC----------chhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCe
Q 000665 560 AG----------QHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPN 629 (1363)
Q Consensus 560 aG----------Qe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~ 629 (1363)
.| +-+-.++... + | =+++.|.+||.+... .-..+.|+.- ++.|+..- .+|
T Consensus 223 PGlLDRPl~ErN~IE~qAi~AL--~-h-l~~~IlF~~D~Se~c-------gy~lE~Q~~L-~~eIk~~f--------~~p 282 (346)
T COG1084 223 PGLLDRPLEERNEIERQAILAL--R-H-LAGVILFLFDPSETC-------GYSLEEQISL-LEEIKELF--------KAP 282 (346)
T ss_pred CcccCCChHHhcHHHHHHHHHH--H-H-hcCeEEEEEcCcccc-------CCCHHHHHHH-HHHHHHhc--------CCC
Confidence 99 1122222221 1 1 257788999998522 2233344433 45665532 247
Q ss_pred EEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 630 VTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 630 VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
+++|.||+|.... +..+++. ..+..... .....++...+.+++.+...+..+
T Consensus 283 ~v~V~nK~D~~~~--e~~~~~~---~~~~~~~~------~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 283 IVVVINKIDIADE--EKLEEIE---ASVLEEGG------EEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred eEEEEecccccch--hHHHHHH---HHHHhhcc------ccccceeeeehhhHHHHHHHHHHH
Confidence 9999999998532 2333222 22222211 112346777888888888777664
No 268
>PRK12736 elongation factor Tu; Reviewed
Probab=98.42 E-value=3.5e-06 Score=101.96 Aligned_cols=162 Identities=14% Similarity=0.176 Sum_probs=88.0
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchhh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y 565 (1363)
+.+++.++|..++|||||+.+|.+................ -..+.++..|+.+. .+..+...+.+||++||+.|
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~--d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSI--DAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhh--cCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4579999999999999999999864111000000000000 00122334454433 23345678899999999988
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
...--.-++ ...+.++|+|+.+. .... -...+..+... +.|++|+|.||+|+.... +
T Consensus 89 ~~~~~~~~~---~~d~~llVvd~~~g--------~~~~---t~~~~~~~~~~--------g~~~~IvviNK~D~~~~~-~ 145 (394)
T PRK12736 89 VKNMITGAA---QMDGAILVVAATDG--------PMPQ---TREHILLARQV--------GVPYLVVFLNKVDLVDDE-E 145 (394)
T ss_pred HHHHHHHHh---hCCEEEEEEECCCC--------Cchh---HHHHHHHHHHc--------CCCEEEEEEEecCCcchH-H
Confidence 754432233 67889999998641 1111 11222333321 234578999999996321 1
Q ss_pred hhHHHHHHHHHHHHHhccccCC---CCcEEEEcCCCCC
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDF---YPTVFTIDARSSA 680 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i---~~~v~~vs~~~~~ 680 (1363)
..+.. .++++..+... .+ ..+++++|+.++.
T Consensus 146 ~~~~i---~~~i~~~l~~~-~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 146 LLELV---EMEVRELLSEY-DFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHHH---HHHHHHHHHHh-CCCcCCccEEEeeccccc
Confidence 11111 12333222111 11 1367899999983
No 269
>PRK13351 elongation factor G; Reviewed
Probab=98.42 E-value=9.8e-07 Score=114.43 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=84.9
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeeccc-----cccccc-CccCCcceEEEEEecCceEEEEEecCCchh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRT-----LVNPVE-QAVRPVGMKIKTLKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~-----~~~p~~-~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~ 564 (1363)
..++.++|..++|||||+++|........ ..+.+.. ...+.+ ....|.+........+..++++||++||..
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~--~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIH--KMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCcc--ccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 35899999999999999999985411100 0010000 001110 111233333334445688999999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|......++. ...++++|+|.++.. .. .....| ..+... ..|+++|+||+|+....
T Consensus 86 f~~~~~~~l~---~aD~~ilVvd~~~~~------~~----~~~~~~-~~~~~~---------~~p~iiviNK~D~~~~~- 141 (687)
T PRK13351 86 FTGEVERSLR---VLDGAVVVFDAVTGV------QP----QTETVW-RQADRY---------GIPRLIFINKMDRVGAD- 141 (687)
T ss_pred HHHHHHHHHH---hCCEEEEEEeCCCCC------CH----HHHHHH-HHHHhc---------CCCEEEEEECCCCCCCC-
Confidence 9888777888 788999999987521 11 112333 333321 23688999999986432
Q ss_pred hhhHHHHHHHHHHHHHhcc
Q 000665 645 QDMQLTVSSIQRLKDKFQG 663 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~ 663 (1363)
....+++++..+..
T Consensus 142 -----~~~~~~~i~~~l~~ 155 (687)
T PRK13351 142 -----LFKVLEDIEERFGK 155 (687)
T ss_pred -----HHHHHHHHHHHHCC
Confidence 12345556655543
No 270
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.41 E-value=8.4e-07 Score=101.82 Aligned_cols=160 Identities=14% Similarity=0.221 Sum_probs=88.9
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecc--cc---ccccc-CccCCcceEEEEEecCceEEEEEecCCchhhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVR--TL---VNPVE-QAVRPVGMKIKTLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~--~~---~~p~~-~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
++.++|.+|+|||||+++|....... ...+.+. +. ..|.+ ....|....+..+..+...+.+||++|+..|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~--~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAI--DRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCC--ccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH
Confidence 36899999999999999997541110 0001100 00 00100 01112233334444567899999999999887
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
.....++. .....++|+|+++.. .. .....|- .+... ..|+++|.||+|+... +
T Consensus 79 ~~~~~~l~---~aD~~i~Vvd~~~g~------~~----~~~~~~~-~~~~~---------~~p~iivvNK~D~~~~---~ 132 (268)
T cd04170 79 GETRAALR---AADAALVVVSAQSGV------EV----GTEKLWE-FADEA---------GIPRIIFINKMDRERA---D 132 (268)
T ss_pred HHHHHHHH---HCCEEEEEEeCCCCC------CH----HHHHHHH-HHHHc---------CCCEEEEEECCccCCC---C
Confidence 66666677 788999999987411 11 1122332 22221 1268899999999643 2
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTH 687 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~ 687 (1363)
.+ +..+.+++.|+.. +. .+.+...++.++..+.+
T Consensus 133 ~~---~~~~~l~~~~~~~--~~--~~~ip~~~~~~~~~~vd 166 (268)
T cd04170 133 FD---KTLAALQEAFGRP--VV--PLQLPIGEGDDFKGVVD 166 (268)
T ss_pred HH---HHHHHHHHHhCCC--eE--EEEecccCCCceeEEEE
Confidence 22 3456677776532 11 12234455555544433
No 271
>PRK13768 GTPase; Provisional
Probab=98.41 E-value=2.1e-06 Score=97.45 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=70.2
Q ss_pred eEEEEEecCCchhhhhcccc---ccc---cCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHh-hchhhhhc
Q 000665 552 TRISIWNLAGQHEFYSLHDL---MFP---GHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVS-NSRRAVQQ 624 (1363)
Q Consensus 552 ~~l~iWDfaGQe~y~~th~~---Flt---~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~-~~~~av~~ 624 (1363)
..+.+||++||.++++.... |+. .. ...+.++|+|++.. .++.. -....|+..... +.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~-~~~~ii~liD~~~~------~~~~d--~~~~~~l~~~~~~~~------ 161 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGS-SKSVVVFLIDAVLA------KTPSD--FVSLLLLALSVQLRL------ 161 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhc-CCeEEEEEechHHh------CCHHH--HHHHHHHHHHHHHHc------
Confidence 47899999999987653332 233 11 16889999998631 12222 234455544332 11
Q ss_pred cCCCeEEEEEeccCCCCCCchhhHHHHHHHH---------------------HHHHHhccccCCCCcEEEEcCCCCCChh
Q 000665 625 CMLPNVTVVLTHYDKINQPSQDMQLTVSSIQ---------------------RLKDKFQGFVDFYPTVFTIDARSSASVT 683 (1363)
Q Consensus 625 ~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~---------------------~lr~~f~~~~~i~~~v~~vs~~~~~~i~ 683 (1363)
..|+++|.||+|+.+.... ++....++ .+.+.+..+ ....+++.+|+.++.|++
T Consensus 162 --~~~~i~v~nK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~-~~~~~vi~iSa~~~~gl~ 236 (253)
T PRK13768 162 --GLPQIPVLNKADLLSEEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEET-GLPVRVIPVSAKTGEGFD 236 (253)
T ss_pred --CCCEEEEEEhHhhcCchhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHH-CCCCcEEEEECCCCcCHH
Confidence 2269999999999754321 11111111 111112111 112367999999999999
Q ss_pred HHHHHHHHH
Q 000665 684 KLTHHIRKT 692 (1363)
Q Consensus 684 ~L~~~L~~~ 692 (1363)
++.+.|.+.
T Consensus 237 ~L~~~I~~~ 245 (253)
T PRK13768 237 ELYAAIQEV 245 (253)
T ss_pred HHHHHHHHH
Confidence 999888763
No 272
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.40 E-value=3e-06 Score=97.34 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=40.3
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEE----ecCceEEEEEecCC
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL----KDEDTRISIWNLAG 561 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~----~~~~~~l~iWDfaG 561 (1363)
.++++++|.+|+|||||+++|.+. +.....+. ..+.....+|.+++.... .+..+.+.|||++|
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~-------~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpG 72 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPP-------DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPG 72 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCC-------CccccccCCceEEEEEEEEEEECCEEEEEEEEecCC
Confidence 479999999999999999999876 21110000 000112244555544332 23457899999999
No 273
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.39 E-value=2e-06 Score=100.14 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=54.8
Q ss_pred EEecCccccchHHHHHHHhhcC-CCCCCcceeecccccccccCccCCcceEEEE-------------------Eec-Cce
Q 000665 494 VFFCGQEYAGKTTLCNSISQNF-SSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT-------------------LKD-EDT 552 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~~-~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~-------------------~~~-~~~ 552 (1363)
+.++|.++||||||.++|.+.. ....+|+.. ...+.|+.... +++ ..+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT-----------~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v 69 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTT-----------IDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYV 69 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcc-----------ccceeEEEEEecCCCchhhhhhhcccccccccCcCcc
Confidence 3589999999999999999762 211122211 01123322211 112 347
Q ss_pred EEEEEecCCc----hhhhhccccccccCCCCeEEEEEEeCCC
Q 000665 553 RISIWNLAGQ----HEFYSLHDLMFPGHGSASCFLIISSLFR 590 (1363)
Q Consensus 553 ~l~iWDfaGQ----e~y~~th~~Flt~~~~~alyLLV~dl~~ 590 (1363)
.+.+||+||+ +.+..+-..|+.......+.++|+|+++
T Consensus 70 ~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 70 PVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred eEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 8999999998 6777776666332227899999999974
No 274
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.36 E-value=4.3e-08 Score=111.12 Aligned_cols=106 Identities=10% Similarity=0.060 Sum_probs=53.4
Q ss_pred CccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHhccCCCccEE-EccCCCCChhhHHHHHHH
Q 000665 103 NVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEEL-QIWEDSIGSKGAEELSKM 181 (1363)
Q Consensus 103 ~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L-~Ls~N~i~~~g~~~L~~~ 181 (1363)
...+|+|..|+|+..+..+|.. .++|+.||||+|+|+..+-. +++..++|..| ++++|+|++....++
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~----l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~l~k~~F--- 136 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKT----LHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITDLPKGAF--- 136 (498)
T ss_pred cceEEEeccCCcccCChhhccc----hhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhhhhhhHh---
Confidence 3466777777777666554433 45677777777776643322 22333333333 334477766433322
Q ss_pred HhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCC
Q 000665 182 IEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGE 223 (1363)
Q Consensus 182 L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n 223 (1363)
.....|+.|.+.-|.+... ....+...++|..|.+-.|
T Consensus 137 -~gL~slqrLllNan~i~Ci---r~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 137 -GGLSSLQRLLLNANHINCI---RQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred -hhHHHHHHHhcChhhhcch---hHHHHHHhhhcchhcccch
Confidence 2234455555555543221 2233444445555554444
No 275
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.34 E-value=1.9e-06 Score=107.18 Aligned_cols=152 Identities=11% Similarity=0.137 Sum_probs=91.8
Q ss_pred ceeEEecCccccchHHHHHHHhhc--CCCCCCcceeec---ccccccccCccCCcceEEE----EEecCceEEEEEecCC
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN--FSSSKLPYIEQV---RTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAG 561 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~--~~~~~~~t~~~~---~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaG 561 (1363)
..++.++|..++|||||+.+|... ... ..+++... ++.+....+.+++.|+.+. .+..++..+++||++|
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~-~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQ-TAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCcc-ccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 458999999999999999998642 111 11111100 0011111233455666653 3446789999999999
Q ss_pred chhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCC
Q 000665 562 QHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKIN 641 (1363)
Q Consensus 562 Qe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~ 641 (1363)
|..|.......++ .....|+|+|.++. +..+...|++....+ ..|+++|+||+|+..
T Consensus 90 ~~df~~~~~~~l~---~aD~aIlVvDa~~g-----------v~~~t~~l~~~~~~~---------~~PiivviNKiD~~~ 146 (527)
T TIGR00503 90 HEDFSEDTYRTLT---AVDNCLMVIDAAKG-----------VETRTRKLMEVTRLR---------DTPIFTFMNKLDRDI 146 (527)
T ss_pred hhhHHHHHHHHHH---hCCEEEEEEECCCC-----------CCHHHHHHHHHHHhc---------CCCEEEEEECccccC
Confidence 9988875444577 78889999998741 122334555544331 236999999999853
Q ss_pred CCchhhHHHHHHHHHHHHHhccccCCCCcEEEE
Q 000665 642 QPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTI 674 (1363)
Q Consensus 642 ~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~v 674 (1363)
.. .. +..+.++..+.. ...+..+++
T Consensus 147 ~~---~~---~ll~~i~~~l~~--~~~~~~~PI 171 (527)
T TIGR00503 147 RD---PL---ELLDEVENELKI--NCAPITWPI 171 (527)
T ss_pred CC---HH---HHHHHHHHHhCC--CCccEEEEe
Confidence 22 22 344566666542 223445666
No 276
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.33 E-value=2.6e-07 Score=101.07 Aligned_cols=132 Identities=19% Similarity=0.168 Sum_probs=80.5
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCC
Q 000665 290 QSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIG 369 (1363)
Q Consensus 290 ~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~ 369 (1363)
+.|++||||+|.|+. +-+.+.-.+.++.|++|.|.|...+. + ....+|..|||| +|.++
T Consensus 284 q~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v~n--L------------a~L~~L~~LDLS--~N~Ls 342 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTVQN--L------------AELPQLQLLDLS--GNLLA 342 (490)
T ss_pred hhhhhccccccchhh-----hhhhhhhccceeEEeccccceeeehh--h------------hhcccceEeecc--cchhH
Confidence 456677777776653 33444555667777777777765543 2 124567777776 45554
Q ss_pred HHHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEe
Q 000665 370 RDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDID 449 (1363)
Q Consensus 370 ~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~Ld 449 (1363)
.... +- ....+++.|.|++| .+.+ ..++.++-+|..||+++|++.--+ -...++.+|-|+.|.
T Consensus 343 ~~~G--wh---~KLGNIKtL~La~N-~iE~------LSGL~KLYSLvnLDl~~N~Ie~ld-----eV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 343 ECVG--WH---LKLGNIKTLKLAQN-KIET------LSGLRKLYSLVNLDLSSNQIEELD-----EVNHIGNLPCLETLR 405 (490)
T ss_pred hhhh--hH---hhhcCEeeeehhhh-hHhh------hhhhHhhhhheeccccccchhhHH-----HhcccccccHHHHHh
Confidence 4211 11 12345788888888 3332 334556778888888888731111 134556678889999
Q ss_pred ccCCCCCCCC
Q 000665 450 LERTPLKNSG 459 (1363)
Q Consensus 450 L~~N~l~~~g 459 (1363)
|.+|||....
T Consensus 406 L~~NPl~~~v 415 (490)
T KOG1259|consen 406 LTGNPLAGSV 415 (490)
T ss_pred hcCCCccccc
Confidence 9999988654
No 277
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.33 E-value=5.3e-06 Score=90.59 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=69.1
Q ss_pred eEEecCccccchHHHHHHHhhc--CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhh---
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN--FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYS--- 567 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~--~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~--- 567 (1363)
+++++|.+|+|||||+++|.+. +..... ....|..............+.+.||+|-.....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~--------------~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~ 67 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLS--------------ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPE 67 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccC--------------CCCcccccceeeEEECCeEEEEEECcCCCCccCChH
Confidence 6899999999999999999976 211100 011233333333333566899999999443321
Q ss_pred -----ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 568 -----LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 568 -----th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
+-..+........++|+|.++.+ +...+..+..|+..+-. ++. ..++++|.||+|....
T Consensus 68 ~~~~~i~~~~~~~~~g~~~illVi~~~~---------~t~~d~~~l~~l~~~fg--~~~-----~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 68 QLSKEIVRCLSLSAPGPHAFLLVVPLGR---------FTEEEEQAVETLQELFG--EKV-----LDHTIVLFTRGDDLEG 131 (196)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEEECCC---------cCHHHHHHHHHHHHHhC--hHh-----HhcEEEEEECccccCC
Confidence 11111111115678999998753 22233444445544322 111 2368999999998754
No 278
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.33 E-value=1.6e-06 Score=97.19 Aligned_cols=124 Identities=11% Similarity=0.096 Sum_probs=65.3
Q ss_pred EEEEEecCCchhhhhccccccc----cC-CCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCC
Q 000665 553 RISIWNLAGQHEFYSLHDLMFP----GH-GSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCML 627 (1363)
Q Consensus 553 ~l~iWDfaGQe~y~~th~~Flt----~~-~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~ 627 (1363)
.+.++||.||.+++..|+..-. .+ +.+.+.+.++|... ..++ ..-+.-+|-......+-.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~------~~~~---~~f~s~~L~s~s~~~~~~l----- 157 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSF------CSDP---SKFVSSLLLSLSIMLRLEL----- 157 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-------SSH---HHHHHHHHHHHHHHHHHTS-----
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEeccc------ccCh---hhHHHHHHHHHHHHhhCCC-----
Confidence 8999999999999999987551 00 25677788888763 1232 2344555555544333222
Q ss_pred CeEEEEEeccCCCCCCchh-------hHHH--------HHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 628 PNVTVVLTHYDKINQPSQD-------MQLT--------VSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 628 p~VilVgTh~D~~~~~~~~-------~~~~--------~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
|.+.|.||+|+.+...+. .+.. ....+.+.+-...+ .....++++|..++.++++|...+.++
T Consensus 158 -P~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~-~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 158 -PHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDF-GLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp -EEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCC-SSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred -CEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhc-CCCceEEEEECCChHHHHHHHHHHHHH
Confidence 799999999997522110 0111 11222333222222 222257889999999999999888764
No 279
>PLN03126 Elongation factor Tu; Provisional
Probab=98.30 E-value=9.6e-06 Score=99.65 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=95.3
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecCCchh
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfaGQe~ 564 (1363)
.+.+++.++|..++|||||+++|............... ......+.++..|+.+.. +..++..+.++|++||+.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~--~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKY--DEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhcccccccc--ccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 34579999999999999999999864111000000000 000011234566765543 345677999999999999
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|....-.-++ ...+.++|+|+.+.. ..+-..++..+... +.|.+++|.||+|++.. .
T Consensus 157 f~~~~~~g~~---~aD~ailVVda~~G~-----------~~qt~e~~~~~~~~--------gi~~iIvvvNK~Dl~~~-~ 213 (478)
T PLN03126 157 YVKNMITGAA---QMDGAILVVSGADGP-----------MPQTKEHILLAKQV--------GVPNMVVFLNKQDQVDD-E 213 (478)
T ss_pred HHHHHHHHHh---hCCEEEEEEECCCCC-----------cHHHHHHHHHHHHc--------CCCeEEEEEecccccCH-H
Confidence 9876655555 678899999987411 12223344444431 13458899999999742 1
Q ss_pred hhhHHHHHHHHHHHHHhcc--ccCCCCcEEEEcCCCCCCh
Q 000665 645 QDMQLTVSSIQRLKDKFQG--FVDFYPTVFTIDARSSASV 682 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~--~~~i~~~v~~vs~~~~~~i 682 (1363)
+..+.+ .++++..+.. +..-.-+++++|+.++.++
T Consensus 214 ~~~~~i---~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 214 ELLELV---ELEVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHHHH---HHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 112222 2233332221 1111235678899887543
No 280
>CHL00071 tufA elongation factor Tu
Probab=98.29 E-value=1.2e-05 Score=97.68 Aligned_cols=166 Identities=12% Similarity=0.131 Sum_probs=94.9
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchh
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~ 564 (1363)
.+.+++.++|..++|||||+++|.+............... ....+.++..|+.+. .+..++..+.+-|++|+..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~--~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDE--IDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCcccccccccccc--ccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 4568999999999999999999997521100000000000 001123445666554 3445677889999999998
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|...-..-++ ...+.++|+|+.+. .. .+-...+..+.. .+.|.+|+|.||+|++...
T Consensus 88 ~~~~~~~~~~---~~D~~ilVvda~~g--------~~---~qt~~~~~~~~~--------~g~~~iIvvvNK~D~~~~~- 144 (409)
T CHL00071 88 YVKNMITGAA---QMDGAILVVSAADG--------PM---PQTKEHILLAKQ--------VGVPNIVVFLNKEDQVDDE- 144 (409)
T ss_pred HHHHHHHHHH---hCCEEEEEEECCCC--------Cc---HHHHHHHHHHHH--------cCCCEEEEEEEccCCCCHH-
Confidence 8766554455 78899999998741 11 122222333332 1134588999999997421
Q ss_pred hhhHHHHHHHHHHHHHhccc--cCCCCcEEEEcCCCCCCh
Q 000665 645 QDMQLTVSSIQRLKDKFQGF--VDFYPTVFTIDARSSASV 682 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~--~~i~~~v~~vs~~~~~~i 682 (1363)
+..+. ..++++..+... ..-..+++++|+.++.++
T Consensus 145 ~~~~~---~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 145 ELLEL---VELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHH---HHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 11222 223333332221 010135788999988654
No 281
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.28 E-value=4e-06 Score=104.32 Aligned_cols=143 Identities=11% Similarity=0.132 Sum_probs=85.6
Q ss_pred ceeEEecCccccchHHHHHHHhhcC-CCCCCcceeec---ccccccccCccCCcceEEE----EEecCceEEEEEecCCc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNF-SSSKLPYIEQV---RTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQ 562 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~-~~~~~~t~~~~---~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQ 562 (1363)
..++.++|..++|||||+.+|.... ......++... ........+.++..|+.+. .+..+...+++||++||
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 4589999999999999999997421 00011111000 0000000112334454443 34567889999999999
Q ss_pred hhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 563 HEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 563 e~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
+.|...-..+++ .....|+|+|+++. .+.+...|++....+ ..|+++|+||+|+...
T Consensus 90 ~df~~~~~~~l~---~aD~aIlVvDa~~g-----------v~~~t~~l~~~~~~~---------~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 90 EDFSEDTYRTLT---AVDSALMVIDAAKG-----------VEPQTRKLMEVCRLR---------DTPIFTFINKLDRDGR 146 (526)
T ss_pred hhhHHHHHHHHH---HCCEEEEEEecCCC-----------CCHHHHHHHHHHHhc---------CCCEEEEEECCccccc
Confidence 999874444567 68889999998741 112334455544331 2369999999998643
Q ss_pred CchhhHHHHHHHHHHHHHhc
Q 000665 643 PSQDMQLTVSSIQRLKDKFQ 662 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~ 662 (1363)
.. . +.+++++..++
T Consensus 147 ~~---~---~~l~~i~~~l~ 160 (526)
T PRK00741 147 EP---L---ELLDEIEEVLG 160 (526)
T ss_pred CH---H---HHHHHHHHHhC
Confidence 21 1 33566666664
No 282
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.27 E-value=2.6e-07 Score=97.92 Aligned_cols=118 Identities=17% Similarity=0.147 Sum_probs=30.7
Q ss_pred CchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHh-hCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEc
Q 000665 247 DVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQ-QNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYL 325 (1363)
Q Consensus 247 s~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~-~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdL 325 (1363)
+.+.++.++.. .....+++|+|++|.|+.. +.+. ...+|+.||||+|.|+.. +++..+++|++|++
T Consensus 5 t~~~i~~~~~~-~n~~~~~~L~L~~n~I~~I------e~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L 71 (175)
T PF14580_consen 5 TANMIEQIAQY-NNPVKLRELNLRGNQISTI------ENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDL 71 (175)
T ss_dssp --------------------------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE-
T ss_pred ccccccccccc-ccccccccccccccccccc------cchhhhhcCCCEEECCCCCCccc------cCccChhhhhhccc
Confidence 33444444332 2334678888888888652 1222 246788888888888741 24556778888888
Q ss_pred cCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCC
Q 000665 326 HGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDD 394 (1363)
Q Consensus 326 s~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N 394 (1363)
++|.|++.+.. +.. ..++|+.|+|+ +|+|.+.+- + ..++.+++|+.|+|.+|
T Consensus 72 ~~N~I~~i~~~-l~~-----------~lp~L~~L~L~--~N~I~~l~~--l-~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 72 SNNRISSISEG-LDK-----------NLPNLQELYLS--NNKISDLNE--L-EPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp -SS---S-CHH-HHH-----------H-TT--EEE-T--TS---SCCC--C-GGGGG-TT--EEE-TT-
T ss_pred CCCCCCccccc-hHH-----------hCCcCCEEECc--CCcCCChHH--h-HHHHcCCCcceeeccCC
Confidence 88888776421 211 23567777776 577765321 1 23455666677777666
No 283
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=2.3e-07 Score=101.51 Aligned_cols=213 Identities=17% Similarity=0.172 Sum_probs=134.0
Q ss_pred hHHHHHHHHhcCCCeeEEEccCCCCCChH-----HHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCc
Q 000665 174 GAEELSKMIEANSTLKSLTIFDSSSLTAT-----PLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDV 248 (1363)
Q Consensus 174 g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~-----~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~ 248 (1363)
|--.++..+.-+++|+.|.++.....-+. ..++..+...++|..+.+|.+.... +.......++|+.+.+..
T Consensus 170 ~k~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~---i~~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 170 GKYDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN---IVDIELLKPTLQTICVHN 246 (490)
T ss_pred CccchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh---eeceeecCchhheeeeec
Confidence 33446666767889999999876422111 2234456666788999999884221 222222334444333211
Q ss_pred hhHH---------HHHH---------------HhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCCh
Q 000665 249 SGSC---------RVAC---------------SLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKD 304 (1363)
Q Consensus 249 ~g~~---------~L~~---------------~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d 304 (1363)
...+ .+.+ .+-.-..|++||||+|.|+. +-+..+-.+.++.|++|+|.|..
T Consensus 247 s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~ 321 (490)
T KOG1259|consen 247 TTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRT 321 (490)
T ss_pred ccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh-----hhhhhhhccceeEEeccccceee
Confidence 1110 0000 01112358899999999875 33455556889999999999885
Q ss_pred HHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCc
Q 000665 305 KGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNE 384 (1363)
Q Consensus 305 ~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~ 384 (1363)
.+ .|..+++|+.||||+|.++....-+ .+.-+++.|.|+ .|.|.+.. .+...-
T Consensus 322 v~------nLa~L~~L~~LDLS~N~Ls~~~Gwh-------------~KLGNIKtL~La--~N~iE~LS------GL~KLY 374 (490)
T KOG1259|consen 322 VQ------NLAELPQLQLLDLSGNLLAECVGWH-------------LKLGNIKTLKLA--QNKIETLS------GLRKLY 374 (490)
T ss_pred eh------hhhhcccceEeecccchhHhhhhhH-------------hhhcCEeeeehh--hhhHhhhh------hhHhhh
Confidence 33 2567789999999999987654322 234678999998 46665532 345556
Q ss_pred ceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeecCCC
Q 000665 385 TVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCKG 425 (1363)
Q Consensus 385 ~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~~ 425 (1363)
+|..||+++|+ |.. +. -...++.++.|+.|.|.+|..
T Consensus 375 SLvnLDl~~N~-Ie~--ld-eV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 375 SLVNLDLSSNQ-IEE--LD-EVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hheeccccccc-hhh--HH-HhcccccccHHHHHhhcCCCc
Confidence 79999999994 443 21 234567789999999999974
No 284
>PRK00049 elongation factor Tu; Reviewed
Probab=98.23 E-value=2e-05 Score=95.37 Aligned_cols=164 Identities=12% Similarity=0.092 Sum_probs=91.4
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchhh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y 565 (1363)
+.+++.++|..++|||||+.+|.+.......... .....-...+.++..|+.+. .|..++..+.+.|++|+..|
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~--~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEA--KAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcc--cchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 4579999999999999999999864111000000 00000000122334454443 34456678899999999988
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
...-..-++ ...+.++|+|+.+.. . .+-..++..+... +.|.+++|.||+|+... .+
T Consensus 89 ~~~~~~~~~---~aD~~llVVDa~~g~------~-----~qt~~~~~~~~~~--------g~p~iiVvvNK~D~~~~-~~ 145 (396)
T PRK00049 89 VKNMITGAA---QMDGAILVVSAADGP------M-----PQTREHILLARQV--------GVPYIVVFLNKCDMVDD-EE 145 (396)
T ss_pred HHHHHhhhc---cCCEEEEEEECCCCC------c-----hHHHHHHHHHHHc--------CCCEEEEEEeecCCcch-HH
Confidence 776655556 788999999986411 1 1222233444331 12335578999999641 11
Q ss_pred hhHHHHHHHHHHHHHhccc--cCCCCcEEEEcCCCCCC
Q 000665 646 DMQLTVSSIQRLKDKFQGF--VDFYPTVFTIDARSSAS 681 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~--~~i~~~v~~vs~~~~~~ 681 (1363)
..+ ...++++..+... ..-..+++++|+.++.+
T Consensus 146 ~~~---~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 146 LLE---LVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHH---HHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence 112 1223344333221 00113578899988753
No 285
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.20 E-value=6.5e-06 Score=106.62 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=90.3
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeeccc--ccccccCccCCcceEEE----EEecCceEEEEEecCCchhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRT--LVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~--~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y 565 (1363)
.++.++|..++|||||+++|....... ..++.++. ......+.++..|+.+. .+..++..+.+||++|+..|
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~--~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRI--HKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCc--cccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 478999999999999999997531110 01111110 00001112233454443 33456789999999999998
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
.......+. ...+.++|+|+++.. ... -..++..+... ..|+++|+||+|+....
T Consensus 89 ~~~~~~~l~---~~D~~ilVvda~~g~--------~~~---~~~~~~~~~~~---------~~p~ivviNK~D~~~~~-- 143 (689)
T TIGR00484 89 TVEVERSLR---VLDGAVAVLDAVGGV--------QPQ---SETVWRQANRY---------EVPRIAFVNKMDKTGAN-- 143 (689)
T ss_pred hHHHHHHHH---HhCEEEEEEeCCCCC--------Chh---HHHHHHHHHHc---------CCCEEEEEECCCCCCCC--
Confidence 876666677 788999999987521 111 12233333321 12588999999997422
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCC
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSS 679 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~ 679 (1363)
. ....+.++..++.. .....+++|+.++
T Consensus 144 -~---~~~~~~i~~~l~~~--~~~~~ipis~~~~ 171 (689)
T TIGR00484 144 -F---LRVVNQIKQRLGAN--AVPIQLPIGAEDN 171 (689)
T ss_pred -H---HHHHHHHHHHhCCC--ceeEEeccccCCC
Confidence 1 23456666665432 1223466666554
No 286
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.19 E-value=1.6e-05 Score=96.68 Aligned_cols=168 Identities=20% Similarity=0.281 Sum_probs=107.6
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe------cCceEEEEEecCCchhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK------DEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~------~~~~~l~iWDfaGQe~y 565 (1363)
-.|+|+|+.++|||||+.+|.+.-. ...|.|.++.-.+ ++..+++||-.+|-..|
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e~-------------------~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~ 86 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIED-------------------PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSH 86 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccCC-------------------CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcch
Confidence 3799999999999999999874311 1124444444332 34568999999998778
Q ss_pred hhccccccc--cCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhh-------------h--------
Q 000665 566 YSLHDLMFP--GHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRA-------------V-------- 622 (1363)
Q Consensus 566 ~~th~~Flt--~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~a-------------v-------- 622 (1363)
...-++-++ .. +..++|||.|++. |=.+-+.+..|+..++.+...- +
T Consensus 87 ~~LLk~~lt~~~l-~~t~vvIvlDlS~---------PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ 156 (472)
T PF05783_consen 87 SDLLKFALTPENL-PNTLVVIVLDLSK---------PWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYV 156 (472)
T ss_pred HhHhcccCCcccc-cceEEEEEecCCC---------hHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhh
Confidence 888887777 22 5688999999984 4455577788877765432110 0
Q ss_pred -----h----------------cc----C----------CCeEEEEEeccCCCCCCchh----hHHHHHHHHHHHHHhcc
Q 000665 623 -----Q----------------QC----M----------LPNVTVVLTHYDKINQPSQD----MQLTVSSIQRLKDKFQG 663 (1363)
Q Consensus 623 -----~----------------~~----~----------~p~VilVgTh~D~~~~~~~~----~~~~~~~~~~lr~~f~~ 663 (1363)
. .. . .-||+||+||+|.......+ .+.+.-+.+.||. |.
T Consensus 157 ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~-~c- 234 (472)
T PF05783_consen 157 EPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRT-FC- 234 (472)
T ss_pred hccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHH-HH-
Confidence 0 00 0 13799999999986421111 1223233344443 21
Q ss_pred ccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 664 FVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 664 ~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+.....+|++|++...+++.|.++|..
T Consensus 235 -L~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 235 -LKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred -HhcCCeEEEeeccccccHHHHHHHHHH
Confidence 112346788999999999988887654
No 287
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.17 E-value=2.8e-05 Score=87.77 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=84.3
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhh-
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYS- 567 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~- 567 (1363)
...++++++|.+|||||||+++|.+..... .+ +.. ..|..........+..++.+||++|-.....
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~----v~-------~~~--~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~ 95 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAA----TS-------AFQ--SETLRVREVSGTVDGFKLNIIDTPGLLESVMD 95 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcc----cC-------CCC--CceEEEEEEEEEECCeEEEEEECCCcCcchhh
Confidence 445799999999999999999999762100 00 000 1133333333334567899999999554411
Q ss_pred ----------ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEecc
Q 000665 568 ----------LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHY 637 (1363)
Q Consensus 568 ----------th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~ 637 (1363)
+.+ |+... ...++++|..+.. ......+..+..++..+-. ..+ ..++++|.||+
T Consensus 96 ~~~~~~~~~~I~~-~l~~~-~idvIL~V~rlD~-------~r~~~~d~~llk~I~e~fG---~~i----~~~~ivV~T~~ 159 (249)
T cd01853 96 QRVNRKILSSIKR-YLKKK-TPDVVLYVDRLDM-------YRRDYLDLPLLRAITDSFG---PSI----WRNAIVVLTHA 159 (249)
T ss_pred HHHHHHHHHHHHH-HHhcc-CCCEEEEEEcCCC-------CCCCHHHHHHHHHHHHHhC---hhh----HhCEEEEEeCC
Confidence 222 33211 2345555544431 0112222334444443321 111 23599999999
Q ss_pred CCCCCCch-----hhHHHHHHHHHHHHH----hccccCCCCcEEEEcCCC
Q 000665 638 DKINQPSQ-----DMQLTVSSIQRLKDK----FQGFVDFYPTVFTIDARS 678 (1363)
Q Consensus 638 D~~~~~~~-----~~~~~~~~~~~lr~~----f~~~~~i~~~v~~vs~~~ 678 (1363)
|....... ..+......+.++++ .....++..+|+.|++..
T Consensus 160 d~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~pv~lven~~ 209 (249)
T cd01853 160 ASSPPDGLNGTPFSYDRFVAQRSHIVQQAIQQAAGDPRLENPVSLVENHP 209 (249)
T ss_pred ccCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccCccccCCEEEEeCCC
Confidence 98643222 122222334444433 223345566888886554
No 288
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.12 E-value=2.4e-05 Score=95.49 Aligned_cols=114 Identities=10% Similarity=0.114 Sum_probs=68.6
Q ss_pred eEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEE
Q 000665 552 TRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVT 631 (1363)
Q Consensus 552 ~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vi 631 (1363)
..+.+.|+.||+.|..+--.-++ ...+.++|+|+.+.. -.+++ ..+| ..+.. .+.+++|
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~---~~D~alLVVda~~g~-----~~~qT----~ehl-~i~~~--------lgi~~iI 175 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAA---VMDAALLLIAANESC-----PQPQT----SEHL-AAVEI--------MKLKHII 175 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHh---hCCEEEEEEECCCCc-----cchhh----HHHH-HHHHH--------cCCCcEE
Confidence 46899999999988665333344 677889999987410 01111 1222 22222 1134699
Q ss_pred EEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 632 VVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 632 lVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+|.||+|++.. ...+ +..+++++.+........+++++|+.+|.|++.|++.|.+
T Consensus 176 VvlNKiDlv~~--~~~~---~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~ 230 (460)
T PTZ00327 176 ILQNKIDLVKE--AQAQ---DQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICT 230 (460)
T ss_pred EEEecccccCH--HHHH---HHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHh
Confidence 99999999632 1211 2233343332221112347899999999999998887753
No 289
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.09 E-value=2.7e-05 Score=95.41 Aligned_cols=179 Identities=10% Similarity=0.082 Sum_probs=100.5
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcc----------ee--ecc-cccccccCccCCcceEEE----EEecCc
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPY----------IE--QVR-TLVNPVEQAVRPVGMKIK----TLKDED 551 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t----------~~--~~~-~~~~p~~~~~~T~Gi~i~----~~~~~~ 551 (1363)
.+.+++.++|..++|||||+.+|........... .+ ..+ .+.....++++-.|+.+. .+..+.
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 3467999999999999999999986411100000 00 000 011111233444555433 234567
Q ss_pred eEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEE
Q 000665 552 TRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVT 631 (1363)
Q Consensus 552 ~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vi 631 (1363)
..+++.|++||+.|...-..-++ ...+.++|+|+.+.. .+ ..++........|. .+.. -+.|++|
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~---~aD~ailVVda~~G~--~e-~~~~~~~qT~eh~~-~~~~--------~gi~~ii 149 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTS---QADVAILVVASTAGE--FE-AGISKDGQTREHAL-LAFT--------LGVKQMI 149 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhh---hcCEEEEEEEcCCCc--ee-cccCCCccHHHHHH-HHHH--------cCCCeEE
Confidence 89999999999999765544455 788899999987421 00 00000001223333 2222 1235689
Q ss_pred EEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCC---CCcEEEEcCCCCCChhH
Q 000665 632 VVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDF---YPTVFTIDARSSASVTK 684 (1363)
Q Consensus 632 lVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i---~~~v~~vs~~~~~~i~~ 684 (1363)
+|.||+|.... ..+.+...+..++++..+... .+ .-+++++|+.+|.|+.+
T Consensus 150 v~vNKmD~~~~-~~~~~~~~~i~~~i~~~l~~~-g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 150 VCINKMDDKTV-NYSQERYDEIKKEVSAYLKKV-GYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEEccccccc-hhhHHHHHHHHHHHHHHHHhc-CCCcccceEEEeecccCCCccc
Confidence 99999995321 112233444555565554321 12 13578999999999864
No 290
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.08 E-value=2.8e-05 Score=102.17 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=46.0
Q ss_pred EEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEE
Q 000665 553 RISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTV 632 (1363)
Q Consensus 553 ~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vil 632 (1363)
.+.+||++||+.|..+....+. ...++++|+|+++.. .+++. ..+..++.. ..|+++
T Consensus 527 ~i~fiDTPGhe~F~~lr~~g~~---~aDivlLVVDa~~Gi------~~qT~-----e~I~~lk~~---------~iPiIV 583 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRKRGGS---LADLAVLVVDINEGF------KPQTI-----EAINILRQY---------KTPFVV 583 (1049)
T ss_pred cEEEEECCCcHHHHHHHHhhcc---cCCEEEEEEECcccC------CHhHH-----HHHHHHHHc---------CCCEEE
Confidence 4899999999999888776666 688999999987421 12222 122223221 236999
Q ss_pred EEeccCCCC
Q 000665 633 VLTHYDKIN 641 (1363)
Q Consensus 633 VgTh~D~~~ 641 (1363)
|+||+|+..
T Consensus 584 ViNKiDL~~ 592 (1049)
T PRK14845 584 AANKIDLIP 592 (1049)
T ss_pred EEECCCCcc
Confidence 999999964
No 291
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.07 E-value=2.2e-05 Score=89.81 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=70.7
Q ss_pred CCCCCCCCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCc
Q 000665 483 DMPLTEPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQ 562 (1363)
Q Consensus 483 ~ip~~~~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQ 562 (1363)
.++......++++++|.+|+||||++++|.+.......+ .... |.............++.||||+|.
T Consensus 30 ~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~-----------f~s~--t~~~~~~~~~~~G~~l~VIDTPGL 96 (313)
T TIGR00991 30 KLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA-----------FQSE--GLRPMMVSRTRAGFTLNIIDTPGL 96 (313)
T ss_pred hcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC-----------CCCc--ceeEEEEEEEECCeEEEEEECCCC
Confidence 334334556899999999999999999999762110000 0000 111111112235679999999997
Q ss_pred hhhhhcc-------ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEe
Q 000665 563 HEFYSLH-------DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLT 635 (1363)
Q Consensus 563 e~y~~th-------~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgT 635 (1363)
.....+. ..|+... +..++|+|.++.. ....+.+.+ .++.|...-...+ ..++|+|.|
T Consensus 97 ~d~~~~~e~~~~~ik~~l~~~-g~DvVLyV~rLD~-------~R~~~~Dkq---lLk~Iqe~FG~~i----w~~~IVVfT 161 (313)
T TIGR00991 97 IEGGYINDQAVNIIKRFLLGK-TIDVLLYVDRLDA-------YRVDTLDGQ---VIRAITDSFGKDI----WRKSLVVLT 161 (313)
T ss_pred CchHHHHHHHHHHHHHHhhcC-CCCEEEEEeccCc-------ccCCHHHHH---HHHHHHHHhhhhh----hccEEEEEE
Confidence 6543222 2233222 3556777755431 012222223 3444444222211 235899999
Q ss_pred ccCCCC
Q 000665 636 HYDKIN 641 (1363)
Q Consensus 636 h~D~~~ 641 (1363)
|+|...
T Consensus 162 h~d~~~ 167 (313)
T TIGR00991 162 HAQFSP 167 (313)
T ss_pred CCccCC
Confidence 999763
No 292
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.06 E-value=2.8e-05 Score=82.62 Aligned_cols=121 Identities=16% Similarity=0.262 Sum_probs=66.5
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhc-ccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSL-HDL 571 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~t-h~~ 571 (1363)
-++++|+.|+|||+|...|..+.. .+|... . .|. .+..+ -......+.+.|+.||+..+.. -+.
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~---~~T~tS---~-e~n----~~~~~----~~~~~~~~~lvD~PGH~rlr~~~~~~ 69 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKT---VPTVTS---M-ENN----IAYNV----NNSKGKKLRLVDIPGHPRLRSKLLDE 69 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS------B------S-SEE----EECCG----SSTCGTCECEEEETT-HCCCHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCc---CCeecc---c-cCC----ceEEe----ecCCCCEEEEEECCCcHHHHHHHHHh
Confidence 589999999999999999998722 122111 0 000 00000 1124567899999999987652 222
Q ss_pred --ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 572 --MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 572 --Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
+++ .....|.|+|.+. ...+. ..+...|-.|-..... ....|||+|++||.|+....
T Consensus 70 ~~~~~---~~k~IIfvvDSs~--------~~~~~-~~~Ae~Ly~iL~~~~~---~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 70 LKYLS---NAKGIIFVVDSST--------DQKEL-RDVAEYLYDILSDTEV---QKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHHG---GEEEEEEEEETTT--------HHHHH-HHHHHHHHHHHHHHHC---CTT--EEEEEEE-TTSTT--
T ss_pred hhchh---hCCEEEEEEeCcc--------chhhH-HHHHHHHHHHHHhhhh---ccCCCCEEEEEeCccccccC
Confidence 345 6777899999762 22333 3334444444332110 12367999999999997543
No 293
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.06 E-value=1.9e-05 Score=87.06 Aligned_cols=162 Identities=20% Similarity=0.259 Sum_probs=96.8
Q ss_pred CCCceeEEecCccccchHHHHHHHhhcC--CCCCCcceeecccccccccCccCCcceEEEE--Ee-cCceEEEEEecCCc
Q 000665 488 EPKSCRVFFCGQEYAGKTTLCNSISQNF--SSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT--LK-DEDTRISIWNLAGQ 562 (1363)
Q Consensus 488 ~~~~~kl~~vG~~~~GKTSL~~~L~~~~--~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~--~~-~~~~~l~iWDfaGQ 562 (1363)
....+++++.|..|+|||||+|+|.++- ..+.. -.|.++.+ |. .+.-.+.+||+.|-
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~v------------------g~~t~~~~~~~~~~~~~~l~lwDtPG~ 97 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKV------------------GVGTDITTRLRLSYDGENLVLWDTPGL 97 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeec------------------ccCCCchhhHHhhccccceEEecCCCc
Confidence 3456899999999999999999999651 11100 11222222 11 23468999999995
Q ss_pred hh-------hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEe
Q 000665 563 HE-------FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLT 635 (1363)
Q Consensus 563 e~-------y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgT 635 (1363)
++ |.....-++. +..+.+++-+..+.. .. -...+|-+.+..-..+ ++++|.|
T Consensus 98 gdg~~~D~~~r~~~~d~l~---~~DLvL~l~~~~dra-------L~---~d~~f~~dVi~~~~~~--------~~i~~Vt 156 (296)
T COG3596 98 GDGKDKDAEHRQLYRDYLP---KLDLVLWLIKADDRA-------LG---TDEDFLRDVIILGLDK--------RVLFVVT 156 (296)
T ss_pred ccchhhhHHHHHHHHHHhh---hccEEEEeccCCCcc-------cc---CCHHHHHHHHHhccCc--------eeEEEEe
Confidence 55 6666666677 788888888876421 11 1123343433332222 6999999
Q ss_pred ccCCCCCC----chh---hHHHHH----HHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 636 HYDKINQP----SQD---MQLTVS----SIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 636 h~D~~~~~----~~~---~~~~~~----~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
-+|+.... ... ...+++ ..+.+.+.|.. ..+++.++.+.+-|++.|..++...
T Consensus 157 Q~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~----V~pV~~~~~r~~wgl~~l~~ali~~ 220 (296)
T COG3596 157 QADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE----VKPVVAVSGRLPWGLKELVRALITA 220 (296)
T ss_pred hhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh----cCCeEEeccccCccHHHHHHHHHHh
Confidence 99986431 111 111112 22333333332 3578889988899999988777653
No 294
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.04 E-value=4.1e-05 Score=85.54 Aligned_cols=163 Identities=19% Similarity=0.229 Sum_probs=96.5
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCC-CCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchh----hh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSS-KLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHE----FY 566 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~-~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~----y~ 566 (1363)
+.+=+||-++||||||+++|....+.. .++++. ..| +.| .... ++-..+.|=|..|--+ -.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTT-----L~P------~iG--~v~y-ddf~q~tVADiPGiI~GAh~nk 262 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTT-----LRP------HIG--TVNY-DDFSQITVADIPGIIEGAHMNK 262 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceee-----ecc------ccc--eeec-cccceeEeccCccccccccccC
Confidence 356789999999999999999773321 111111 011 334 1112 2222388899988321 11
Q ss_pred hccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh
Q 000665 567 SLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD 646 (1363)
Q Consensus 567 ~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~ 646 (1363)
.+=.-||+-.....+.+.|+|++.+.. .++-+..+.+.+=|+.-...... + |++||+||+|... .
T Consensus 263 GlG~~FLrHiER~~~l~fVvD~s~~~~----~~p~~~~~lL~~ELe~yek~L~~------r-p~liVaNKiD~~e----a 327 (366)
T KOG1489|consen 263 GLGYKFLRHIERCKGLLFVVDLSGKQL----RNPWQQLQLLIEELELYEKGLAD------R-PALIVANKIDLPE----A 327 (366)
T ss_pred cccHHHHHHHHhhceEEEEEECCCccc----CCHHHHHHHHHHHHHHHhhhhcc------C-ceEEEEeccCchh----H
Confidence 222235553336778899999985211 13333334444444444432221 2 5999999999951 1
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+ ..++++..+.++. .|+.+||+++.++..|.+.|+.
T Consensus 328 e~---~~l~~L~~~lq~~-----~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 328 EK---NLLSSLAKRLQNP-----HVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HH---HHHHHHHHHcCCC-----cEEEeeeccccchHHHHHHHhh
Confidence 11 2346666665432 5899999999999999988864
No 295
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=1.4e-05 Score=81.00 Aligned_cols=117 Identities=16% Similarity=0.251 Sum_probs=76.1
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDL 571 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~ 571 (1363)
-|++++|-.+||||||++.|+.+--....||.- | .+..+.| .+++|..+|.|||..=.-.+.-
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlH-------P-----TSE~l~I-----g~m~ftt~DLGGH~qArr~wkd 83 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLH-------P-----TSEELSI-----GGMTFTTFDLGGHLQARRVWKD 83 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccccCCCcC-------C-----ChHHhee-----cCceEEEEccccHHHHHHHHHH
Confidence 599999999999999999999874444455432 1 2333333 5679999999999887777776
Q ss_pred ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 572 MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 572 Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
++. .....+..+|+.+++ .+.+...++.--|....- ..-|++|.|||+|.+...
T Consensus 84 yf~---~v~~iv~lvda~d~e------r~~es~~eld~ll~~e~l---------a~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 84 YFP---QVDAIVYLVDAYDQE------RFAESKKELDALLSDESL---------ATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHh---hhceeEeeeehhhHH------HhHHHHHHHHHHHhHHHH---------hcCcceeecccccCCCcc
Confidence 666 455566667776532 223332333332222211 122699999999997654
No 296
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=1e-05 Score=95.04 Aligned_cols=173 Identities=14% Similarity=0.205 Sum_probs=100.5
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchh-------
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHE------- 564 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~------- 564 (1363)
+++.++|.++||||||+|+|.++ .+.++.|++++.|+. |+ ..++-..+++.+-||||-.+
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~-----------drsIVSpv~GTTRDa-ie-a~v~~~G~~v~L~DTAGiRe~~~~~iE 335 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSRE-----------DRSIVSPVPGTTRDA-IE-AQVTVNGVPVRLSDTAGIREESNDGIE 335 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC-----------CceEeCCCCCcchhh-he-eEeecCCeEEEEEeccccccccCChhH
Confidence 69999999999999999999976 345566776665543 22 22335678999999999554
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
--.+-+.+=+.. .+.+.++|+|+.. +..+....+..-|..+..-...-+....+-++|+|.||.|....-.
T Consensus 336 ~~gI~rA~k~~~-~advi~~vvda~~--------~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 336 ALGIERARKRIE-RADVILLVVDAEE--------SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred HHhHHHHHHHHh-hcCEEEEEecccc--------cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc
Confidence 222223332222 6899999999842 0011112223334443331111111112346999999999976422
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
+..... +..... + ... ..+.+.++||+++.|.++|...|.+.
T Consensus 407 ~~~~~~---~~~~~~-~-~~~-~~~i~~~vs~~tkeg~~~L~~all~~ 448 (531)
T KOG1191|consen 407 EMTKIP---VVYPSA-E-GRS-VFPIVVEVSCTTKEGCERLSTALLNI 448 (531)
T ss_pred cccCCc---eecccc-c-cCc-ccceEEEeeechhhhHHHHHHHHHHH
Confidence 211100 001111 1 110 12345679999999999998887763
No 297
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.03 E-value=3.1e-05 Score=93.05 Aligned_cols=88 Identities=16% Similarity=0.239 Sum_probs=55.7
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEE-------------------EEec-C
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK-------------------TLKD-E 550 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~-------------------~~~~-~ 550 (1363)
+|+.++|.++||||||.++|.+. +....+|+... ..+.|+... .+++ .
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~-----------~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~ 70 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTI-----------DPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTR 70 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcce-----------eeeeeeeeeccCCchhhhhhhhccccccccCCcc
Confidence 58999999999999999999976 22212221110 112222110 0111 2
Q ss_pred ceEEEEEecCC----chhhhhccccccccCCCCeEEEEEEeCCC
Q 000665 551 DTRISIWNLAG----QHEFYSLHDLMFPGHGSASCFLIISSLFR 590 (1363)
Q Consensus 551 ~~~l~iWDfaG----Qe~y~~th~~Flt~~~~~alyLLV~dl~~ 590 (1363)
.+.+.+||+|| ++.+..+-..|+.......+.+.|+|+..
T Consensus 71 ~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 71 FIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 46799999999 56666666667332227889999999973
No 298
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.02 E-value=1.5e-05 Score=84.83 Aligned_cols=116 Identities=19% Similarity=0.396 Sum_probs=76.3
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe---cCceEEEEEecCCchhhhh-
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK---DEDTRISIWNLAGQHEFYS- 567 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~---~~~~~l~iWDfaGQe~y~~- 567 (1363)
-|+++.|..|+||||+.-.+..++....... .+.-|++..-+ -++..+++||+|||++|-.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~r---------------lg~tidveHsh~RflGnl~LnlwDcGgqe~fmen 69 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRR---------------LGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMEN 69 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhc---------------cCCcceeeehhhhhhhhheeehhccCCcHHHHHH
Confidence 4899999999999999777765421100000 02224444322 3678999999999996543
Q ss_pred ----ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHH---HHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 568 ----LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLR---FIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 568 ----th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~---~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
.-+.-++ .-.+.+-|||++. .+++..++|.-. .+..++|.| .|.+..+|.|++
T Consensus 70 ~~~~q~d~iF~---nV~vli~vFDves----------~e~~~D~~~yqk~Le~ll~~SP~A-------kiF~l~hKmDLv 129 (295)
T KOG3886|consen 70 YLSSQEDNIFR---NVQVLIYVFDVES----------REMEKDFHYYQKCLEALLQNSPEA-------KIFCLLHKMDLV 129 (295)
T ss_pred HHhhcchhhhe---eheeeeeeeeccc----------hhhhhhHHHHHHHHHHHHhcCCcc-------eEEEEEeechhc
Confidence 2333345 5677889999864 455566666544 444566665 699999999997
Q ss_pred CC
Q 000665 641 NQ 642 (1363)
Q Consensus 641 ~~ 642 (1363)
..
T Consensus 130 ~~ 131 (295)
T KOG3886|consen 130 QE 131 (295)
T ss_pred cc
Confidence 54
No 299
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.01 E-value=0.00025 Score=77.62 Aligned_cols=186 Identities=12% Similarity=0.224 Sum_probs=98.7
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe--------------------
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-------------------- 548 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-------------------- 548 (1363)
.++-++++|-.|+||||++++|..- .....-|++-+...-+.. .....-|+|.+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~---vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRN---VPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhc---CCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 3467899999999999999999876 222222332221110000 0001112221110
Q ss_pred ------------------cCceEEEEEecCCchhhhh-------ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhH
Q 000665 549 ------------------DEDTRISIWNLAGQHEFYS-------LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEI 603 (1363)
Q Consensus 549 ------------------~~~~~l~iWDfaGQe~y~~-------th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~ 603 (1363)
.+....-+.|+.||-+-+. +...|-+ . -..+.+.|+|..+ ..++.++
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~las-s-~ptvv~YvvDt~r------s~~p~tF 166 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLAS-S-FPTVVVYVVDTPR------STSPTTF 166 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhh-c-CCeEEEEEecCCc------CCCchhH
Confidence 2345577888888854221 1111111 1 3566777788654 2345555
Q ss_pred HHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc-----hhhHHHHHHHHHHH---------------HHhcc
Q 000665 604 EEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS-----QDMQLTVSSIQRLK---------------DKFQG 663 (1363)
Q Consensus 604 ~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~-----~~~~~~~~~~~~lr---------------~~f~~ 663 (1363)
-..+.|=-..+.. . +-|.|+|.||.|.+...- .+.+.+.+.+++.. ..|-.
T Consensus 167 MSNMlYAcSilyk-t--------klp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~ 237 (366)
T KOG1532|consen 167 MSNMLYACSILYK-T--------KLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYR 237 (366)
T ss_pred HHHHHHHHHHHHh-c--------cCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHh
Confidence 4555443332222 1 236999999999974321 12222222222211 11211
Q ss_pred ccCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHhh
Q 000665 664 FVDFYPTVFTIDARSSASVTKLTHHIRKTSRTILQR 699 (1363)
Q Consensus 664 ~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~i~~~ 699 (1363)
. -..+.||+.+|.|.++++.++....++--..
T Consensus 238 ~----lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ 269 (366)
T KOG1532|consen 238 S----LRTVGVSSVTGEGFDDFFTAVDESVDEYEEE 269 (366)
T ss_pred h----CceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence 1 1457899999999999999998877665433
No 300
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.01 E-value=5.3e-05 Score=93.35 Aligned_cols=175 Identities=19% Similarity=0.235 Sum_probs=108.2
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCc-------hh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQ-------HE 564 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQ-------e~ 564 (1363)
.++.++|++++|||||.|+|++.... +.||-+ -|+..+...+..+..++++-|..|- ++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~--------VgNwpG------vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D 69 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQK--------VGNWPG------VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED 69 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCce--------ecCCCC------eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch
Confidence 46899999999999999999976211 222211 1333333344456677999999992 22
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
=..+.++-+. ++.++.+-|+|+++ .+..+..=|+..... . |++++.|.+|......
T Consensus 70 E~Var~~ll~--~~~D~ivnVvDAtn------------LeRnLyltlQLlE~g---------~-p~ilaLNm~D~A~~~G 125 (653)
T COG0370 70 EKVARDFLLE--GKPDLIVNVVDATN------------LERNLYLTLQLLELG---------I-PMILALNMIDEAKKRG 125 (653)
T ss_pred HHHHHHHHhc--CCCCEEEEEcccch------------HHHHHHHHHHHHHcC---------C-CeEEEeccHhhHHhcC
Confidence 2233333332 36799999999874 334444445554431 2 5999999999864332
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHH-HHhhcCchHHHHHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRT-ILQRVPRVYQLCNDLIQILS 715 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~-i~~~~P~~~~l~~~l~~~l~ 715 (1363)
...+ .+++.+..+ -+|+.++++++.|++++++++.+.... ..+..|...+..++.++.+.
T Consensus 126 i~ID-----~~~L~~~LG------vPVv~tvA~~g~G~~~l~~~i~~~~~~~~~~~~~~y~~~ie~~i~~l~ 186 (653)
T COG0370 126 IRID-----IEKLSKLLG------VPVVPTVAKRGEGLEELKRAIIELAESKTTPREVDYGEEIEEEIKELE 186 (653)
T ss_pred Cccc-----HHHHHHHhC------CCEEEEEeecCCCHHHHHHHHHHhccccccccccccchHHHHHHHHHH
Confidence 2222 345555543 368999999999999999888653221 11344555555555555544
No 301
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=4e-05 Score=90.91 Aligned_cols=169 Identities=18% Similarity=0.194 Sum_probs=109.8
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe-------cCceEEEEEecCCchhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-------DEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-------~~~~~l~iWDfaGQe~y 565 (1363)
++-++-.-.=|||||..+|.+--. .-.+..++.+-... -+-+|..||.|+..+ +....+++.||.||..|
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg-~i~~~~~q~q~LDk--l~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTG-TIDNNIGQEQVLDK--LQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhC-CCCCCCchhhhhhh--hhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 456777788899999999986411 00011111000000 023567888877543 35689999999999998
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..=-.--+. .....|||+|+.. .. ..+....+||.+=... .||.|.||+|+.+.+.+
T Consensus 139 s~EVsRsla---ac~G~lLvVDA~q--------Gv-qAQT~anf~lAfe~~L-----------~iIpVlNKIDlp~adpe 195 (650)
T KOG0462|consen 139 SGEVSRSLA---ACDGALLVVDASQ--------GV-QAQTVANFYLAFEAGL-----------AIIPVLNKIDLPSADPE 195 (650)
T ss_pred cceehehhh---hcCceEEEEEcCc--------Cc-hHHHHHHHHHHHHcCC-----------eEEEeeeccCCCCCCHH
Confidence 776655566 6778999999974 11 2224456777665442 38999999999765433
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHHhhcCch
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRTILQRVPRV 703 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~i~~~~P~~ 703 (1363)
. ....+.+-|... .+.++.+|+++|.++++++++|. +++|..
T Consensus 196 ~------V~~q~~~lF~~~---~~~~i~vSAK~G~~v~~lL~AII-------~rVPpP 237 (650)
T KOG0462|consen 196 R------VENQLFELFDIP---PAEVIYVSAKTGLNVEELLEAII-------RRVPPP 237 (650)
T ss_pred H------HHHHHHHHhcCC---ccceEEEEeccCccHHHHHHHHH-------hhCCCC
Confidence 2 234555555422 24789999999999999776553 456655
No 302
>PRK12740 elongation factor G; Reviewed
Probab=98.01 E-value=3.2e-05 Score=100.33 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=71.9
Q ss_pred cCccccchHHHHHHHhhcCCCCCCcceeec------ccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 497 CGQEYAGKTTLCNSISQNFSSSKLPYIEQV------RTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 497 vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~------~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|..++|||||+.+|....... ...+.+ ............|.+.....+..++..+.+||++|+..|.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i--~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAI--HRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCC--ccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 5899999999999996541110 000100 01100111112234444445556788999999999998876666
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCC
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKIN 641 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~ 641 (1363)
.++. ...+.++|+|.++.. .. .....| ..+... ..|+++|+||+|...
T Consensus 79 ~~l~---~aD~vllvvd~~~~~------~~----~~~~~~-~~~~~~---------~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALR---VLDGAVVVVCAVGGV------EP----QTETVW-RQAEKY---------GVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHH---HhCeEEEEEeCCCCc------CH----HHHHHH-HHHHHc---------CCCEEEEEECCCCCC
Confidence 6777 788999999987421 11 112223 333221 126889999999864
No 303
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.01 E-value=3.9e-05 Score=76.08 Aligned_cols=106 Identities=12% Similarity=0.166 Sum_probs=63.9
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchh--------
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHE-------- 564 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~-------- 564 (1363)
|+.++|.+|+|||||+++|.+.... .++ + ....|.......+.-....+.++|+.|-..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~----~~~-------~--~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~ 67 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLA----KVS-------N--IPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG 67 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSS----EES-------S--STTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccc----ccc-------c--cccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH
Confidence 6899999999999999999964110 000 1 112344444444444667778999999421
Q ss_pred --hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEec
Q 000665 565 --FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTH 636 (1363)
Q Consensus 565 --y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh 636 (1363)
+..+.... . ...+.++|+|..+ ........+..|| +. .+|+++|.||
T Consensus 68 ~~~~~~~~~~-~---~~d~ii~vv~~~~--------~~~~~~~~~~~~l---~~----------~~~~i~v~NK 116 (116)
T PF01926_consen 68 KEIRKFLEQI-S---KSDLIIYVVDASN--------PITEDDKNILREL---KN----------KKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHH-C---TESEEEEEEETTS--------HSHHHHHHHHHHH---HT----------TSEEEEEEES
T ss_pred HHHHHHHHHH-H---HCCEEEEEEECCC--------CCCHHHHHHHHHH---hc----------CCCEEEEEcC
Confidence 22233333 4 6788999999652 1112223444444 21 2479999997
No 304
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=4.1e-05 Score=88.93 Aligned_cols=180 Identities=14% Similarity=0.159 Sum_probs=106.6
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeec-------------ccccccccCccCCcceEEEE----EecCc
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQV-------------RTLVNPVEQAVRPVGMKIKT----LKDED 551 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~-------------~~~~~p~~~~~~T~Gi~i~~----~~~~~ 551 (1363)
.++++++|+|...+|||||+-+|..........+++.. -.|+-..-.++|-.|+.+.. +..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 45789999999999999999999754211111111100 00111111345666755443 33567
Q ss_pred eEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEE
Q 000665 552 TRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVT 631 (1363)
Q Consensus 552 ~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vi 631 (1363)
.+|.|.|+.||..|-.=+ +++...+++++||+|+.+.+ ....+ ....+-..-+-..+.. +-..+|
T Consensus 85 ~~~tIiDaPGHrdFvknm---ItGasqAD~aVLVV~a~~~e---fE~g~-~~~gQtrEH~~La~tl--------Gi~~lI 149 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNM---ITGASQADVAVLVVDARDGE---FEAGF-GVGGQTREHAFLARTL--------GIKQLI 149 (428)
T ss_pred ceEEEeeCCchHHHHHHh---hcchhhccEEEEEEECCCCc---ccccc-ccCCchhHHHHHHHhc--------CCceEE
Confidence 789999999987766543 33333788999999997531 00000 0001111111111111 123589
Q ss_pred EEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhH
Q 000665 632 VVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTK 684 (1363)
Q Consensus 632 lVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~ 684 (1363)
++.||.|.++-++++.+++++.+..+++.++.... ...++++|+.+|.++.+
T Consensus 150 VavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~-~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 150 VAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPK-DVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEEcccccccCHHHHHHHHHHHHHHHHHcCCCcc-CCeEEecccccCCcccc
Confidence 99999999986666677777667777777654322 23578999999998755
No 305
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.00 E-value=4.1e-05 Score=74.11 Aligned_cols=137 Identities=18% Similarity=0.207 Sum_probs=81.8
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC----chhhhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG----QHEFYSL 568 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG----Qe~y~~t 568 (1363)
|++++|..|+|||||.++|.++...- ..|..|+.. ++ -..|+.| |..+|..
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly------------------kKTQAve~~---d~----~~IDTPGEy~~~~~~Y~a 57 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY------------------KKTQAVEFN---DK----GDIDTPGEYFEHPRWYHA 57 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh------------------cccceeecc---Cc----cccCCchhhhhhhHHHHH
Confidence 78999999999999999999873210 113333221 11 0237777 3333322
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhH
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQ 648 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~ 648 (1363)
.-.-.. ...+.++|-++.++.+ +-|.....-+..|||-|.||+|+.++ .+
T Consensus 58 L~tt~~---dadvi~~v~~and~~s-----------------------~f~p~f~~~~~k~vIgvVTK~DLaed--~d-- 107 (148)
T COG4917 58 LITTLQ---DADVIIYVHAANDPES-----------------------RFPPGFLDIGVKKVIGVVTKADLAED--AD-- 107 (148)
T ss_pred HHHHhh---ccceeeeeecccCccc-----------------------cCCcccccccccceEEEEecccccch--Hh--
Confidence 222223 7888888888765211 11111111122249999999999642 22
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 649 LTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 649 ~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+....+.|++. + ..++|.+|+.+..|+++|++.|..
T Consensus 108 -I~~~~~~L~ea-G-----a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 108 -ISLVKRWLREA-G-----AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred -HHHHHHHHHHc-C-----CcceEEEeccCcccHHHHHHHHHh
Confidence 22333444443 2 246899999999999999998864
No 306
>PLN03127 Elongation factor Tu; Provisional
Probab=98.00 E-value=9.9e-05 Score=90.38 Aligned_cols=129 Identities=14% Similarity=0.097 Sum_probs=74.0
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE----EEecCceEEEEEecCCchh
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~ 564 (1363)
.+.+++.++|..++|||||+++|.+......... ..........++++..|+.+. .+..++.++.+.|++|+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~--~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAK--AVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhccc--ceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3467999999999999999999974310000000 000000001122344554433 3445667899999999988
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCC
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKIN 641 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~ 641 (1363)
|...-..-+. ..++.++|+|+.+. ..........++ .. .+.|.+|+|.||+|+..
T Consensus 137 f~~~~~~g~~---~aD~allVVda~~g--------~~~qt~e~l~~~---~~--------~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 137 YVKNMITGAA---QMDGGILVVSAPDG--------PMPQTKEHILLA---RQ--------VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred hHHHHHHHHh---hCCEEEEEEECCCC--------CchhHHHHHHHH---HH--------cCCCeEEEEEEeeccCC
Confidence 7665444444 67889999998641 111112222222 22 11234688999999964
No 307
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.99 E-value=1.9e-06 Score=91.41 Aligned_cols=106 Identities=21% Similarity=0.219 Sum_probs=43.5
Q ss_pred CCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHH-hcCCCCCEEEccCCCCCHhhHHHH
Q 000665 260 CNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGL-FKNRSLESLYLHGNWFSGVGVEHL 338 (1363)
Q Consensus 260 ~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L-~~~~~L~~LdLs~N~l~~~g~~~L 338 (1363)
...+|+.||||+|.|+.. +.+..++.|+.|++++|.|++.+ +.+ ..+++|++|+|++|+|.+.+- +
T Consensus 40 ~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~-----~~l~~~lp~L~~L~L~~N~I~~l~~--l 106 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSIS-----EGLDKNLPNLQELYLSNNKISDLNE--L 106 (175)
T ss_dssp T-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-C-----HHHHHH-TT--EEE-TTS---SCCC--C
T ss_pred hhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccc-----cchHHhCCcCCEEECcCCcCCChHH--h
Confidence 357889999999999863 23455688999999999998642 223 356889999999999877542 1
Q ss_pred HhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEE
Q 000665 339 LCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLG 390 (1363)
Q Consensus 339 ~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~ 390 (1363)
..| ..+++|+.|+|. .|.++... .+=...+..+++|+.||
T Consensus 107 -~~L--------~~l~~L~~L~L~--~NPv~~~~-~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 107 -EPL--------SSLPKLRVLSLE--GNPVCEKK-NYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -GGG--------GG-TT--EEE-T--T-GGGGST-THHHHHHHH-TT-SEET
T ss_pred -HHH--------HcCCCcceeecc--CCcccchh-hHHHHHHHHcChhheeC
Confidence 222 456789999997 46765432 11222334445555554
No 308
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.98 E-value=0.00011 Score=81.17 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=67.5
Q ss_pred eeEEecCccccchHHHHHHHhhc--CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCch------
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN--FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQH------ 563 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~--~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe------ 563 (1363)
++++++|..|+||||+++.|.+. |.... .....|..............+.|+||.|=-
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~--------------~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~ 66 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGS--------------SAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD 66 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--T--------------TTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecc--------------ccCCcccccceeeeeecceEEEEEeCCCCCCCcccH
Confidence 48999999999999999999976 22110 011124444444444566789999999911
Q ss_pred --hhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCC
Q 000665 564 --EFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKIN 641 (1363)
Q Consensus 564 --~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~ 641 (1363)
....+-+++......-.++|+|+++.+ +...+...-.|+..+-. +.. .-.++||.||+|...
T Consensus 67 ~~~~~~i~~~l~~~~~g~ha~llVi~~~r---------~t~~~~~~l~~l~~~FG--~~~-----~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 67 EEIIREIKRCLSLCSPGPHAFLLVIPLGR---------FTEEDREVLELLQEIFG--EEI-----WKHTIVVFTHADELE 130 (212)
T ss_dssp HHHHHHHHHHHHHTTT-ESEEEEEEETTB----------SHHHHHHHHHHHHHHC--GGG-----GGGEEEEEEEGGGGT
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEEecCc---------chHHHHHHHHHHHHHcc--HHH-----HhHhhHHhhhccccc
Confidence 111121211111114667899998762 23333444455555533 111 124899999999875
Q ss_pred CC
Q 000665 642 QP 643 (1363)
Q Consensus 642 ~~ 643 (1363)
..
T Consensus 131 ~~ 132 (212)
T PF04548_consen 131 DD 132 (212)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 309
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.97 E-value=0.00019 Score=79.80 Aligned_cols=169 Identities=19% Similarity=0.272 Sum_probs=103.0
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEE------ecCceEEEEEecCCchhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL------KDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~------~~~~~~l~iWDfaGQe~y 565 (1363)
-.|+++|+.|+|||||+..|.+.-... .-.|.+..-. .++..++.+|=.-|..-.
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~K-------------------kgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h 113 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSETVK-------------------KGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYH 113 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhcccccC-------------------CCCCcceEEEecccccchhhhhcceEEecCchhh
Confidence 378999999999999999998752111 0122222221 245778999999997544
Q ss_pred hhccccccc-cCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhh-----------------------
Q 000665 566 YSLHDLMFP-GHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRA----------------------- 621 (1363)
Q Consensus 566 ~~th~~Flt-~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~a----------------------- 621 (1363)
-....|-+. ..-..+++|++.|+++ +=+.-+.+..|...++.+...-
T Consensus 114 ~~LLk~al~ats~aetlviltasms~---------Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYve 184 (473)
T KOG3905|consen 114 KGLLKFALPATSLAETLVILTASMSN---------PWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVE 184 (473)
T ss_pred hhHHhhcccccCccceEEEEEEecCC---------cHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcC
Confidence 444444444 1114689999999984 3344577788877665432100
Q ss_pred --------------h------------------hccCCCeEEEEEeccCCCCCCch----hhHHHHHHHHHHHHHhcccc
Q 000665 622 --------------V------------------QQCMLPNVTVVLTHYDKINQPSQ----DMQLTVSSIQRLKDKFQGFV 665 (1363)
Q Consensus 622 --------------v------------------~~~~~p~VilVgTh~D~~~~~~~----~~~~~~~~~~~lr~~f~~~~ 665 (1363)
+ .+.-.-||++|.||+|.++-... +-+.+.-+-.+|| +|+ +
T Consensus 185 p~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lR-kFC--L 261 (473)
T KOG3905|consen 185 PGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLR-KFC--L 261 (473)
T ss_pred ccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHH-HHH--H
Confidence 0 00002569999999998642211 1122222223333 332 2
Q ss_pred CCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 666 DFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 666 ~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.....+|+.|.+..++++-|.++|..
T Consensus 262 r~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 262 RYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred HcCceeEEeecccccchHHHHHHHHH
Confidence 23456789999999999998887754
No 310
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.96 E-value=0.00011 Score=82.16 Aligned_cols=147 Identities=21% Similarity=0.233 Sum_probs=85.9
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th 569 (1363)
+...+.++|.+|+|||||++.|.+..... +.. ...|. +..+.....++.+.|++|+- ..+.
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~---~~~-------------~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~l 98 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQ---NIS-------------DIKGP-ITVVTGKKRRLTFIECPNDI--NAMI 98 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccC---ccc-------------ccccc-EEEEecCCceEEEEeCCchH--HHHH
Confidence 34678999999999999999998652211 000 11221 12233467788999999964 2222
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
.. .. ...+.++|+|.+.. ..... ...+..+.. .+.|.+++|.||+|+.+.. ...+
T Consensus 99 ~~-ak---~aDvVllviDa~~~--------~~~~~---~~i~~~l~~--------~g~p~vi~VvnK~D~~~~~-~~~~- 153 (225)
T cd01882 99 DI-AK---VADLVLLLIDASFG--------FEMET---FEFLNILQV--------HGFPRVMGVLTHLDLFKKN-KTLR- 153 (225)
T ss_pred HH-HH---hcCEEEEEEecCcC--------CCHHH---HHHHHHHHH--------cCCCeEEEEEeccccCCcH-HHHH-
Confidence 22 23 67889999998641 11221 223333433 1234577799999997422 2222
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCCh
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASV 682 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i 682 (1363)
...+.++++|...+--..+++.+|+.+...+
T Consensus 154 --~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 154 --KTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred --HHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 3345555544322112368999999987544
No 311
>COG2262 HflX GTPases [General function prediction only]
Probab=97.96 E-value=9.1e-05 Score=86.25 Aligned_cols=148 Identities=19% Similarity=0.243 Sum_probs=92.6
Q ss_pred eEEecCccccchHHHHHHHhhc--CCC-CCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC--------
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN--FSS-SKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG-------- 561 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~--~~~-~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG-------- 561 (1363)
.+-++|-.+||||||.|+|.+. +.. ..+.|.+ | .|.-+++ ++...+.+=||-|
T Consensus 194 ~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLd-------p-----ttR~~~l----~~g~~vlLtDTVGFI~~LP~~ 257 (411)
T COG2262 194 LVALVGYTNAGKSTLFNALTGADVYVADQLFATLD-------P-----TTRRIEL----GDGRKVLLTDTVGFIRDLPHP 257 (411)
T ss_pred eEEEEeeccccHHHHHHHHhccCeecccccccccc-------C-----ceeEEEe----CCCceEEEecCccCcccCChH
Confidence 7889999999999999999965 211 1222221 1 1222222 2355677779988
Q ss_pred -chhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 562 -QHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 562 -Qe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
=+-|++|.+--. .+++.+.|+|+++ | ...+..+.+..-|..|.. ..+|+|+|.||+|++
T Consensus 258 LV~AFksTLEE~~----~aDlllhVVDaSd------p-~~~~~~~~v~~vL~el~~---------~~~p~i~v~NKiD~~ 317 (411)
T COG2262 258 LVEAFKSTLEEVK----EADLLLHVVDASD------P-EILEKLEAVEDVLAEIGA---------DEIPIILVLNKIDLL 317 (411)
T ss_pred HHHHHHHHHHHhh----cCCEEEEEeecCC------h-hHHHHHHHHHHHHHHcCC---------CCCCEEEEEeccccc
Confidence 345666666532 5899999999985 1 112222334444444422 236899999999987
Q ss_pred CCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 641 NQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 641 ~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+.. ....+...+ +..+.+|++++.|++.|++.|..
T Consensus 318 ~~~~--------~~~~~~~~~-------~~~v~iSA~~~~gl~~L~~~i~~ 353 (411)
T COG2262 318 EDEE--------ILAELERGS-------PNPVFISAKTGEGLDLLRERIIE 353 (411)
T ss_pred Cchh--------hhhhhhhcC-------CCeEEEEeccCcCHHHHHHHHHH
Confidence 5331 122222222 13577999999999999887765
No 312
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=4.7e-06 Score=91.72 Aligned_cols=87 Identities=17% Similarity=0.092 Sum_probs=43.2
Q ss_pred CCCccEEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHH
Q 000665 129 NGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAV 208 (1363)
Q Consensus 129 ~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~ 208 (1363)
++.+++|+|.+|.|++ |..++..+...+.|+.|+|+.|++.+. +..++ ....+|+.|-|.+..+. .......
T Consensus 70 ~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~-I~~lp---~p~~nl~~lVLNgT~L~--w~~~~s~ 141 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSD-IKSLP---LPLKNLRVLVLNGTGLS--WTQSTSS 141 (418)
T ss_pred hhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCc-cccCc---ccccceEEEEEcCCCCC--hhhhhhh
Confidence 4456666666666653 555555566666666666666665442 11111 12345666655544331 1112333
Q ss_pred HHhCCCceEEEccCC
Q 000665 209 LARNRAMEVHVWSGE 223 (1363)
Q Consensus 209 l~~~~~L~~L~Ls~n 223 (1363)
+...+.++.|.+|.|
T Consensus 142 l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDN 156 (418)
T ss_pred hhcchhhhhhhhccc
Confidence 444555555655555
No 313
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.90 E-value=3.3e-07 Score=108.36 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=110.0
Q ss_pred hHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCC
Q 000665 250 GSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNW 329 (1363)
Q Consensus 250 g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~ 329 (1363)
.+..++......-.|+.|.|..|.+.. +..+++....|+.|||+.|+++. ++..++.++ |+.|-+++|+
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS~-----lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLSH-----LPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhhc-----CChhhhcCc-ceeEEEecCc
Confidence 333344333444456666666666644 34455555667777888777763 555566665 7788888887
Q ss_pred CCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHH
Q 000665 330 FSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSL 409 (1363)
Q Consensus 330 l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L 409 (1363)
++...... ....+|..|+.+ +|.|.. +..-++...+|+.|++..|+ +..+++.+
T Consensus 155 l~~lp~~i-------------g~~~tl~~ld~s--~nei~s-----lpsql~~l~slr~l~vrRn~------l~~lp~El 208 (722)
T KOG0532|consen 155 LTSLPEEI-------------GLLPTLAHLDVS--KNEIQS-----LPSQLGYLTSLRDLNVRRNH------LEDLPEEL 208 (722)
T ss_pred cccCCccc-------------ccchhHHHhhhh--hhhhhh-----chHHhhhHHHHHHHHHhhhh------hhhCCHHH
Confidence 76543211 223466677776 566544 33345556678888888885 66778877
Q ss_pred hhCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCCCC
Q 000665 410 QKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNSG 459 (1363)
Q Consensus 410 ~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~~g 459 (1363)
. .-.|.+||++.|+. ..|+-.++.+.+|++|.|.+||+..++
T Consensus 209 ~-~LpLi~lDfScNki-------s~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 209 C-SLPLIRLDFSCNKI-------SYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred h-CCceeeeecccCce-------eecchhhhhhhhheeeeeccCCCCCCh
Confidence 6 55788999999872 346778888999999999999999987
No 314
>PRK09866 hypothetical protein; Provisional
Probab=97.89 E-value=0.00013 Score=89.47 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=67.3
Q ss_pred ceEEEEEecCCchh-hhh-ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCC
Q 000665 551 DTRISIWNLAGQHE-FYS-LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLP 628 (1363)
Q Consensus 551 ~~~l~iWDfaGQe~-y~~-th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p 628 (1363)
...+.+.||+|=.. .+. +...+....+..++.++|+|.++.. + ..+..+ ++.++.. +...
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~------s--~~DeeI---lk~Lkk~-------~K~~ 290 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLK------S--ISDEEV---REAILAV-------GQSV 290 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCC------C--hhHHHH---HHHHHhc-------CCCC
Confidence 56789999999533 222 2222112122789999999986421 1 111222 3333321 1112
Q ss_pred eEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 629 NVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 629 ~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
||++|.||+|.........+.+.+.+ +..+.....-.+.+|+||+++|.|++.|++.|..
T Consensus 291 PVILVVNKIDl~dreeddkE~Lle~V---~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 291 PLYVLVNKFDQQDRNSDDADQVRALI---SGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CEEEEEEcccCCCcccchHHHHHHHH---HHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 69999999998633222233222222 2222111111357899999999999999988865
No 315
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.87 E-value=0.00058 Score=80.45 Aligned_cols=173 Identities=18% Similarity=0.240 Sum_probs=82.1
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCC-CCCcceeecccccccccCccCCcceEEEEE-ecCceEEEEEecCCc-----
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSS-SKLPYIEQVRTLVNPVEQAVRPVGMKIKTL-KDEDTRISIWNLAGQ----- 562 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~-~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~-~~~~~~l~iWDfaGQ----- 562 (1363)
.++++.|+|++|+|||||+|+|.+--.. ... .|+...+.|.. ...+ +.+-..+.+||+.|-
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~a----------A~tGv~etT~~--~~~Y~~p~~pnv~lWDlPG~gt~~f 101 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGA----------APTGVVETTME--PTPYPHPKFPNVTLWDLPGIGTPNF 101 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS------------SSSHSCCTS---EEEE-SS-TTEEEEEE--GGGSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCc----------CCCCCCcCCCC--CeeCCCCCCCCCeEEeCCCCCCCCC
Confidence 3579999999999999999999853110 000 01111111211 1112 234457999999992
Q ss_pred --hhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 563 --HEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 563 --e~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
+.|..-.. | . .-++||++.+-. +.+ -.-||-.-..+..+ ++++|-||+|..
T Consensus 102 ~~~~Yl~~~~-~-~---~yD~fiii~s~r----------f~~----ndv~La~~i~~~gK--------~fyfVRTKvD~D 154 (376)
T PF05049_consen 102 PPEEYLKEVK-F-Y---RYDFFIIISSER----------FTE----NDVQLAKEIQRMGK--------KFYFVRTKVDSD 154 (376)
T ss_dssp -HHHHHHHTT-G-G---G-SEEEEEESSS------------H----HHHHHHHHHHHTT---------EEEEEE--HHHH
T ss_pred CHHHHHHHcc-c-c---ccCEEEEEeCCC----------Cch----hhHHHHHHHHHcCC--------cEEEEEeccccc
Confidence 33444333 3 3 478888888742 122 23455333332222 599999999961
Q ss_pred --CC----C-chhhHHHHHHHHHHHHH----hccccCCCCcEEEEcCCCCC--ChhHHHHHHHHH-----HHHHHhhcCc
Q 000665 641 --NQ----P-SQDMQLTVSSIQRLKDK----FQGFVDFYPTVFTIDARSSA--SVTKLTHHIRKT-----SRTILQRVPR 702 (1363)
Q Consensus 641 --~~----~-~~~~~~~~~~~~~lr~~----f~~~~~i~~~v~~vs~~~~~--~i~~L~~~L~~~-----~~~i~~~~P~ 702 (1363)
.. + .-+.+ +.++++|+. +...---.+.||.||+.+.. +...|.+.|.+- +......+|.
T Consensus 155 l~~~~~~~p~~f~~e---~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fllsLp~ 231 (376)
T PF05049_consen 155 LYNERRRKPRTFNEE---KLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFLLSLPN 231 (376)
T ss_dssp HHHHHCC-STT--HH---THHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHHHHS--
T ss_pred HhhhhccCCcccCHH---HHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHHHHhHH
Confidence 00 0 01111 223333332 22211123589999999854 577888887752 3334456776
Q ss_pred hH
Q 000665 703 VY 704 (1363)
Q Consensus 703 ~~ 704 (1363)
..
T Consensus 232 is 233 (376)
T PF05049_consen 232 IS 233 (376)
T ss_dssp -S
T ss_pred hh
Confidence 64
No 316
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.85 E-value=0.00012 Score=91.17 Aligned_cols=245 Identities=18% Similarity=0.199 Sum_probs=110.6
Q ss_pred CCCccEEEccCC-CCChhhHHHHHHHHhcCCCeeEEEccCC-CCCC-hHHHHHHHHHhCCCceEEEccCCCCcchhHHHh
Q 000665 157 NDTLEELQIWED-SIGSKGAEELSKMIEANSTLKSLTIFDS-SSLT-ATPLISAVLARNRAMEVHVWSGENGEKSSKVVE 233 (1363)
Q Consensus 157 ~~sL~~L~Ls~N-~i~~~g~~~L~~~L~~~~~L~~L~Ls~n-~~~~-~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~ 233 (1363)
.+.|+.|.+.++ .+++.+ +......++.|++|+++++ .... ...........+++|+.|+++.+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--------- 254 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG--------- 254 (482)
T ss_pred CchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh---------
Confidence 455566665544 344433 2223333555666666552 1111 111122233444555555555542
Q ss_pred hcCCCCcceeeccCchhHHHHHHHhcCCCcccEEEccCCC-CChHHHHHHHHHHhhCCCccEEEccCCC-CChHHHHHHH
Q 000665 234 FLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVR-LKSRWAKEFRWVLQQNQSLKEVILSKTC-LKDKGVVYVA 311 (1363)
Q Consensus 234 ~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~-L~~~~~~~L~~~L~~n~~L~~LdLs~N~-L~d~g~~~L~ 311 (1363)
.+++.++..++.. +++|+.|.+.++. +++.|+..++.. ++.|++|+|+.|. +++.+...+.
T Consensus 255 -----------~isd~~l~~l~~~---c~~L~~L~l~~c~~lt~~gl~~i~~~---~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 255 -----------LVTDIGLSALASR---CPNLETLSLSNCSNLTDEGLVSIAER---CPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred -----------ccCchhHHHHHhh---CCCcceEccCCCCccchhHHHHHHHh---cCcccEEeeecCccchHHHHHHHH
Confidence 1555566555543 4466666666665 666666555443 3456677776654 3455554442
Q ss_pred HHHhcCCCCCEEEccCCC----CCHhhHHHHHhhh-hhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcce
Q 000665 312 AGLFKNRSLESLYLHGNW----FSGVGVEHLLCPL-SRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETV 386 (1363)
Q Consensus 312 ~~L~~~~~L~~LdLs~N~----l~~~g~~~L~~~L-~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L 386 (1363)
..+++|+.|.+.... +++.++..+...- .....+....+..++.+.+.+ +.+++.+.
T Consensus 318 ---~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~--~~~~~~~~------------- 379 (482)
T KOG1947|consen 318 ---KNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSY--CGISDLGL------------- 379 (482)
T ss_pred ---HhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhh--hhccCcch-------------
Confidence 234545554433221 4443332222100 000011112333344443331 11222221
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCC
Q 000665 387 TQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKN 457 (1363)
Q Consensus 387 ~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~ 457 (1363)
.+.+.++..++ ++ +......+..++.|+++.|.. .++..+..+... +.++..+++.+.+.-.
T Consensus 380 -~~~l~gc~~l~-~~---l~~~~~~~~~l~~L~l~~~~~-~t~~~l~~~~~~---~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 380 -ELSLRGCPNLT-ES---LELRLCRSDSLRVLNLSDCRL-VTDKGLRCLADS---CSNLKDLDLSGCRVIT 441 (482)
T ss_pred -HHHhcCCcccc-hH---HHHHhccCCccceEecccCcc-ccccchHHHhhh---hhccccCCccCccccc
Confidence 12223332222 11 111122233389999988873 343344444433 6678888888877444
No 317
>PRK12739 elongation factor G; Reviewed
Probab=97.83 E-value=9.4e-05 Score=95.94 Aligned_cols=156 Identities=19% Similarity=0.137 Sum_probs=89.5
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecc--cccccccCccCCcceEE----EEEecCceEEEEEecCCchh
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVR--TLVNPVEQAVRPVGMKI----KTLKDEDTRISIWNLAGQHE 564 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~--~~~~p~~~~~~T~Gi~i----~~~~~~~~~l~iWDfaGQe~ 564 (1363)
..++.++|..++|||||+++|....... ..++.+. +......+.++..|+.+ .++..++..+++||++|+..
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~--~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKS--HKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCc--cccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 3579999999999999999997531110 0011000 00000111223344333 23444678999999999988
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|.......+. ...+.++|+|+.+. .+.... ..+..+... +. |+|+|.||+|+....
T Consensus 86 f~~e~~~al~---~~D~~ilVvDa~~g--------~~~qt~---~i~~~~~~~--------~~-p~iv~iNK~D~~~~~- 141 (691)
T PRK12739 86 FTIEVERSLR---VLDGAVAVFDAVSG--------VEPQSE---TVWRQADKY--------GV-PRIVFVNKMDRIGAD- 141 (691)
T ss_pred HHHHHHHHHH---HhCeEEEEEeCCCC--------CCHHHH---HHHHHHHHc--------CC-CEEEEEECCCCCCCC-
Confidence 8776555566 67889999998752 111112 222223221 12 578999999997422
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCC
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSS 679 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~ 679 (1363)
....+++++..+... ..+..+++|+..+
T Consensus 142 -----~~~~~~~i~~~l~~~--~~~~~iPis~~~~ 169 (691)
T PRK12739 142 -----FFRSVEQIKDRLGAN--AVPIQLPIGAEDD 169 (691)
T ss_pred -----HHHHHHHHHHHhCCC--ceeEEeccccccc
Confidence 224567777776532 1233456666554
No 318
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.80 E-value=0.00018 Score=89.52 Aligned_cols=144 Identities=24% Similarity=0.230 Sum_probs=94.6
Q ss_pred cCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeec
Q 000665 166 WEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYR 245 (1363)
Q Consensus 166 s~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~ 245 (1363)
..+.+...+...+. ...+.|+.|.+.+|....... +......++.|+.|+++++.. .
T Consensus 171 ~~~~~~~~~~~~l~---~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~-------------------~ 227 (482)
T KOG1947|consen 171 CGSLLLDKILLRLL---SSCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCL-------------------L 227 (482)
T ss_pred ccccccHHHHHHHH---hhCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCccc-------------------c
Confidence 34444444433332 236778888888775443322 556667778888888877300 0
Q ss_pred cCchhHHHHHHHhcCCCcccEEEccCCC-CChHHHHHHHHHHhhCCCccEEEccCCC-CChHHHHHHHHHHhcCCCCCEE
Q 000665 246 LDVSGSCRVACSLGCNTTVKSLDMTGVR-LKSRWAKEFRWVLQQNQSLKEVILSKTC-LKDKGVVYVAAGLFKNRSLESL 323 (1363)
Q Consensus 246 Ls~~g~~~L~~~L~~~~~L~~LdLs~N~-L~~~~~~~L~~~L~~n~~L~~LdLs~N~-L~d~g~~~L~~~L~~~~~L~~L 323 (1363)
+...+..... ....+.+|+.|+++.+. +++.++..++.. +++|+.|.+.+|. +++.|+..++ ..++.|++|
T Consensus 228 ~~~~~~~~~~-~~~~~~~L~~l~l~~~~~isd~~l~~l~~~---c~~L~~L~l~~c~~lt~~gl~~i~---~~~~~L~~L 300 (482)
T KOG1947|consen 228 ITLSPLLLLL-LLSICRKLKSLDLSGCGLVTDIGLSALASR---CPNLETLSLSNCSNLTDEGLVSIA---ERCPSLREL 300 (482)
T ss_pred cccchhHhhh-hhhhcCCcCccchhhhhccCchhHHHHHhh---CCCcceEccCCCCccchhHHHHHH---HhcCcccEE
Confidence 1111211111 23445789999999987 899888887765 5789999988888 8999988776 456779999
Q ss_pred EccCCC-CCHhhHHHHH
Q 000665 324 YLHGNW-FSGVGVEHLL 339 (1363)
Q Consensus 324 dLs~N~-l~~~g~~~L~ 339 (1363)
+|+.+. +++.+...+.
T Consensus 301 ~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 301 DLSGCHGLTDSGLEALL 317 (482)
T ss_pred eeecCccchHHHHHHHH
Confidence 999765 5677777664
No 319
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.78 E-value=1.3e-05 Score=97.54 Aligned_cols=156 Identities=18% Similarity=0.146 Sum_probs=87.5
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCC
Q 000665 159 TLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPEN 238 (1363)
Q Consensus 159 sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~ 238 (1363)
+|+.|++++|.+.. ++..+...++|+.|++++|++.. ++......+.|+.|++++|+... +.......
T Consensus 141 nL~~L~l~~N~i~~-----l~~~~~~l~~L~~L~l~~N~l~~----l~~~~~~~~~L~~L~ls~N~i~~---l~~~~~~~ 208 (394)
T COG4886 141 NLKELDLSDNKIES-----LPSPLRNLPNLKNLDLSFNDLSD----LPKLLSNLSNLNNLDLSGNKISD---LPPEIELL 208 (394)
T ss_pred hcccccccccchhh-----hhhhhhccccccccccCCchhhh----hhhhhhhhhhhhheeccCCcccc---Cchhhhhh
Confidence 45555555555443 21223334455555555554211 22222244445555555553111 11111112
Q ss_pred CcceeeccCchhHHHHHHHhcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCC
Q 000665 239 GTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNR 318 (1363)
Q Consensus 239 ~~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~ 318 (1363)
..|+.+.++.+....+...+....++..|.+++|++.+. ...+....+++.|++++|.+++... +....
T Consensus 209 ~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~~------~~~~~ 277 (394)
T COG4886 209 SALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQISSISS------LGSLT 277 (394)
T ss_pred hhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-----cchhccccccceecccccccccccc------ccccC
Confidence 224444444443444445556677888888999988652 2345556779999999999986332 67789
Q ss_pred CCCEEEccCCCCCHhhHHH
Q 000665 319 SLESLYLHGNWFSGVGVEH 337 (1363)
Q Consensus 319 ~L~~LdLs~N~l~~~g~~~ 337 (1363)
+|+.|++++|.++......
T Consensus 278 ~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 278 NLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccCEEeccCccccccchhh
Confidence 9999999999988765443
No 320
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.77 E-value=1.3e-05 Score=97.52 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=125.7
Q ss_pred EEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHHHHhcCC-CeeEEEccCCCCCChHHHHHHHHHhC
Q 000665 134 EVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANS-TLKSLTIFDSSSLTATPLISAVLARN 212 (1363)
Q Consensus 134 ~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~-~L~~L~Ls~n~~~~~~~~l~~~l~~~ 212 (1363)
.|+++.|.+... ...+...+.++.|++.+|.+++ +........ +|+.|++++|++.. ++..+..+
T Consensus 97 ~l~~~~~~~~~~-----~~~~~~~~~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~i~~----l~~~~~~l 162 (394)
T COG4886 97 SLDLNLNRLRSN-----ISELLELTNLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNKIES----LPSPLRNL 162 (394)
T ss_pred eeeccccccccC-----chhhhcccceeEEecCCccccc-----Cccccccchhhcccccccccchhh----hhhhhhcc
Confidence 566666665211 1122233667888888888776 333333342 78888888887432 33467778
Q ss_pred CCceEEEccCCCCcchhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCCcccEEEccCCC-CChHHHHHHHHHHhhCCC
Q 000665 213 RAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTVKSLDMTGVR-LKSRWAKEFRWVLQQNQS 291 (1363)
Q Consensus 213 ~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~L~~LdLs~N~-L~~~~~~~L~~~L~~n~~ 291 (1363)
++|+.|++++|+.. .+.........|+.+.++.+.+..++..+.....|++|++++|. +.. ...+.....
T Consensus 163 ~~L~~L~l~~N~l~---~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~------~~~~~~~~~ 233 (394)
T COG4886 163 PNLKNLDLSFNDLS---DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL------LSSLSNLKN 233 (394)
T ss_pred ccccccccCCchhh---hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceec------chhhhhccc
Confidence 88888888888422 22222226677888888888888887765555678888888884 322 233445567
Q ss_pred ccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHH
Q 000665 292 LKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRD 371 (1363)
Q Consensus 292 L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~ 371 (1363)
+..|.+++|++.+. ...+...++|+.|++++|.+++... + ....+++.|+++ .|.+...
T Consensus 234 l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~~--~------------~~~~~l~~L~~s--~n~~~~~ 292 (394)
T COG4886 234 LSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQISSISS--L------------GSLTNLRELDLS--GNSLSNA 292 (394)
T ss_pred ccccccCCceeeec-----cchhccccccceecccccccccccc--c------------cccCccCEEecc--Ccccccc
Confidence 77777888887642 3445677778888888888887665 2 345688888887 4555543
No 321
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=1e-05 Score=89.12 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=53.5
Q ss_pred ccEEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHh
Q 000665 132 IKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLAR 211 (1363)
Q Consensus 132 L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~ 211 (1363)
+.-|.+.++.|...|...... .....+++|||.+|.|++ ...++..+++.+.|+.|+|+.|++......++ ..
T Consensus 47 ~ellvln~~~id~~gd~~~~~--~~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p 119 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFG--SSVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LP 119 (418)
T ss_pred hhhheecCCCCCcchhHHHHH--HHhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCccccCc---cc
Confidence 344556666676555433222 123457888888888876 55677777778888888888887655444333 23
Q ss_pred CCCceEEEccCC
Q 000665 212 NRAMEVHVWSGE 223 (1363)
Q Consensus 212 ~~~L~~L~Ls~n 223 (1363)
..+|+.|.|.|.
T Consensus 120 ~~nl~~lVLNgT 131 (418)
T KOG2982|consen 120 LKNLRVLVLNGT 131 (418)
T ss_pred ccceEEEEEcCC
Confidence 456666666665
No 322
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.70 E-value=0.0002 Score=84.15 Aligned_cols=163 Identities=10% Similarity=0.120 Sum_probs=97.4
Q ss_pred CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCC
Q 000665 515 FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTN 594 (1363)
Q Consensus 515 ~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~ 594 (1363)
+...+.||..++-.. ..+|.|+...++.-+++.+.+||.|||...+..|..++. .....+.|+|+++-...
T Consensus 130 ~~~~y~Pt~~Dil~~------r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~---~v~~iifvv~lsd~d~~ 200 (317)
T cd00066 130 SDPDYIPTEQDILRA------RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFE---DVTAIIFVVALSEYDQV 200 (317)
T ss_pred hCCCCCCChhHheee------ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhC---CCCEEEEEEEchhcccc
Confidence 445677775543222 234889999999888999999999999999999999998 78888999999852111
Q ss_pred C-CCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch------------h-hHHHHHHHHHHHHH
Q 000665 595 R-EPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ------------D-MQLTVSSIQRLKDK 660 (1363)
Q Consensus 595 ~-~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~------------~-~~~~~~~~~~lr~~ 660 (1363)
- +......+.+.+..|=..+.... -...|++|++||.|.....-. . .....+..+.++.+
T Consensus 201 ~~e~~~~nrl~esl~~f~~i~~~~~------~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~ 274 (317)
T cd00066 201 LFEDESTNRMQESLNLFDSICNSRW------FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKK 274 (317)
T ss_pred cccCCcchHHHHHHHHHHHHHhCcc------ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHH
Confidence 0 11111233333333333332211 012379999999997532100 0 11233455666666
Q ss_pred hccccCCC-C--cEEEEcCCCCCChhHHHHHHHHH
Q 000665 661 FQGFVDFY-P--TVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 661 f~~~~~i~-~--~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
|.....-. . .++.++|++..+++.+++.+.+.
T Consensus 275 F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~ 309 (317)
T cd00066 275 FLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDI 309 (317)
T ss_pred HHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHH
Confidence 65432111 1 23455666677777777666553
No 323
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.67 E-value=0.00035 Score=77.02 Aligned_cols=55 Identities=7% Similarity=0.087 Sum_probs=36.9
Q ss_pred eEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 629 NVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 629 ~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+.++|+||+|+......... +..+.+++..+ ..+++.+||+++.|++++++++.+
T Consensus 150 a~iiv~NK~Dl~~~~~~~~~---~~~~~l~~~~~-----~~~i~~~Sa~~g~gv~~l~~~i~~ 204 (207)
T TIGR00073 150 ADLIVINKADLAEAVGFDVE---KMKADAKKINP-----EAEIILMSLKTGEGLDEWLEFLEG 204 (207)
T ss_pred CCEEEEEHHHccccchhhHH---HHHHHHHHhCC-----CCCEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999643221222 23333443321 136899999999999999998865
No 324
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.67 E-value=7.8e-05 Score=96.94 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=57.5
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE--------EEecCceEEEEEecCCch
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK--------TLKDEDTRISIWNLAGQH 563 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~--------~~~~~~~~l~iWDfaGQe 563 (1363)
.++.++|..++|||||+.+|............+..... ...+.+...|+.+. ...+.+..+++||++|+.
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~--d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYL--DFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeec--CCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 58999999999999999999753110000000000000 00011112222221 134567899999999999
Q ss_pred hhhhccccccccCCCCeEEEEEEeCCC
Q 000665 564 EFYSLHDLMFPGHGSASCFLIISSLFR 590 (1363)
Q Consensus 564 ~y~~th~~Flt~~~~~alyLLV~dl~~ 590 (1363)
.|...-...++ ..++.|+|+|+.+
T Consensus 98 ~f~~~~~~al~---~aD~~llVvda~~ 121 (720)
T TIGR00490 98 DFGGDVTRAMR---AVDGAIVVVCAVE 121 (720)
T ss_pred ccHHHHHHHHH---hcCEEEEEEecCC
Confidence 98755555667 7889999999874
No 325
>PRK00007 elongation factor G; Reviewed
Probab=97.66 E-value=0.00022 Score=92.51 Aligned_cols=155 Identities=17% Similarity=0.143 Sum_probs=87.1
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecc--cccccccCccCCcceEEE----EEecCceEEEEEecCCchhh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVR--TLVNPVEQAVRPVGMKIK----TLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~--~~~~p~~~~~~T~Gi~i~----~~~~~~~~l~iWDfaGQe~y 565 (1363)
.++.++|..++|||||+++|....... ..++.+. +......+.++..|+.+. ++..++..+++.|++|+..|
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~--~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVN--HKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCc--cccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 489999999999999999997431100 0011100 000000112233444443 23346789999999999887
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..--.--+. ...+.++|+|+.+. ...... ..|.. +... +. |+|+|.||+|+....
T Consensus 89 ~~ev~~al~---~~D~~vlVvda~~g--------~~~qt~--~~~~~-~~~~--------~~-p~iv~vNK~D~~~~~-- 143 (693)
T PRK00007 89 TIEVERSLR---VLDGAVAVFDAVGG--------VEPQSE--TVWRQ-ADKY--------KV-PRIAFVNKMDRTGAD-- 143 (693)
T ss_pred HHHHHHHHH---HcCEEEEEEECCCC--------cchhhH--HHHHH-HHHc--------CC-CEEEEEECCCCCCCC--
Confidence 663333344 56789999998642 112212 22322 2221 12 478999999997422
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCC
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSS 679 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~ 679 (1363)
....++.+++++... .....+++|+.++
T Consensus 144 ----~~~~~~~i~~~l~~~--~~~~~ipisa~~~ 171 (693)
T PRK00007 144 ----FYRVVEQIKDRLGAN--PVPIQLPIGAEDD 171 (693)
T ss_pred ----HHHHHHHHHHHhCCC--eeeEEecCccCCc
Confidence 224567777777543 1233456676655
No 326
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.63 E-value=0.00041 Score=81.13 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=93.4
Q ss_pred ccccCCCCCCCCceeEEecCccccchHHHHHHHhhcCCCCCCccee----------------ecccccccccCccCCcce
Q 000665 479 DLLKDMPLTEPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIE----------------QVRTLVNPVEQAVRPVGM 542 (1363)
Q Consensus 479 ~llk~ip~~~~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~----------------~~~~~~~p~~~~~~T~Gi 542 (1363)
+.|+++...+..++-+-++|+-++||||+++++++.. -+|.+. .-+++.+..+.......+
T Consensus 5 ~iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~---VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAv 81 (492)
T TIGR02836 5 DIYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELL---VLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAV 81 (492)
T ss_pred hHHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhh---ccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcce
Confidence 3444555455677889999999999999999999761 112221 001111111111222345
Q ss_pred EEEEEecCceEEEEEecCCchh--------hhh----------------------ccccccccCCCCeEEEEEE-eCCCC
Q 000665 543 KIKTLKDEDTRISIWNLAGQHE--------FYS----------------------LHDLMFPGHGSASCFLIIS-SLFRK 591 (1363)
Q Consensus 543 ~i~~~~~~~~~l~iWDfaGQe~--------y~~----------------------th~~Flt~~~~~alyLLV~-dl~~~ 591 (1363)
++...++-.+.+.+.||+|-.. -.. |....- . ..++-|+|. |.+--
T Consensus 82 EI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~-d--hstIgivVtTDgsi~ 158 (492)
T TIGR02836 82 EININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ-E--HSTIGVVVTTDGTIT 158 (492)
T ss_pred EEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH-h--cCcEEEEEEcCCCcc
Confidence 5555556678899999999322 222 333322 2 467778887 65310
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcE
Q 000665 592 PTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTV 671 (1363)
Q Consensus 592 ~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v 671 (1363)
+=.|+ +..+ .-..|+..++... -|.++|.|+.|..... . .+..+++.++|. -++
T Consensus 159 dI~Re--~y~~---aEe~~i~eLk~~~---------kPfiivlN~~dp~~~e--t----~~l~~~l~eky~------vpv 212 (492)
T TIGR02836 159 DIPRE--DYVE---AEERVIEELKELN---------KPFIILLNSTHPYHPE--T----EALRQELEEKYD------VPV 212 (492)
T ss_pred ccccc--cchH---HHHHHHHHHHhcC---------CCEEEEEECcCCCCch--h----HHHHHHHHHHhC------Cce
Confidence 00011 2222 3345566655521 1699999999953221 1 123456666764 256
Q ss_pred EEEcCCCC
Q 000665 672 FTIDARSS 679 (1363)
Q Consensus 672 ~~vs~~~~ 679 (1363)
+.+||..-
T Consensus 213 l~v~c~~l 220 (492)
T TIGR02836 213 LAMDVESM 220 (492)
T ss_pred EEEEHHHc
Confidence 88998764
No 327
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.60 E-value=4e-06 Score=102.48 Aligned_cols=158 Identities=21% Similarity=0.229 Sum_probs=78.9
Q ss_pred CCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHh
Q 000665 261 NTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLC 340 (1363)
Q Consensus 261 ~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~ 340 (1363)
+..|+.+++++|.+...... . +..+.+|+.+++++|.+.... .+.....+..+++..|.++.......
T Consensus 161 l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i~------~~~~~~~l~~~~l~~n~i~~~~~l~~-- 228 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIREIE------GLDLLKKLVLLSLLDNKISKLEGLNE-- 228 (414)
T ss_pred chhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhccc------chHHHHHHHHhhcccccceeccCccc--
Confidence 45666777777766553321 1 244566777777777765321 12222333344666666653321100
Q ss_pred hhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEe
Q 000665 341 PLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSL 420 (1363)
Q Consensus 341 ~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~L 420 (1363)
..+..|+.++++ .|.+...+ ..+..+..+..|++.+|+ +.. ...+.....+..+.+
T Consensus 229 ----------~~~~~L~~l~l~--~n~i~~~~-----~~~~~~~~l~~l~~~~n~-~~~------~~~~~~~~~~~~~~~ 284 (414)
T KOG0531|consen 229 ----------LVMLHLRELYLS--GNRISRSP-----EGLENLKNLPVLDLSSNR-ISN------LEGLERLPKLSELWL 284 (414)
T ss_pred ----------chhHHHHHHhcc--cCcccccc-----ccccccccccccchhhcc-ccc------cccccccchHHHhcc
Confidence 000125666665 45555432 344555667777777773 322 111223444555555
Q ss_pred ecCCCCCChhHHHHHHHH--HhcCCCccEEeccCCCCCCC
Q 000665 421 QGCKGVRGELVQQAIMET--LQVNPWIEDIDLERTPLKNS 458 (1363)
Q Consensus 421 s~N~~~i~~~~~~~L~~~--L~~n~~L~~LdL~~N~l~~~ 458 (1363)
..|.. .. .....+. ....+.+..+.+..|++...
T Consensus 285 ~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 285 NDNKL--AL--SEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred Ccchh--cc--hhhhhccccccccccccccccccCccccc
Confidence 55541 11 1122222 44467788888888887764
No 328
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.57 E-value=8.6e-06 Score=98.69 Aligned_cols=143 Identities=20% Similarity=0.132 Sum_probs=94.6
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCH
Q 000665 291 SLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGR 370 (1363)
Q Consensus 291 ~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~ 370 (1363)
.|...+.++|.+. .+-++|.-.+.|++|||++|++++.. +| ..++.|++|||+ +|.+..
T Consensus 165 ~L~~a~fsyN~L~-----~mD~SLqll~ale~LnLshNk~~~v~------~L--------r~l~~LkhLDls--yN~L~~ 223 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-----LMDESLQLLPALESLNLSHNKFTKVD------NL--------RRLPKLKHLDLS--YNCLRH 223 (1096)
T ss_pred hHhhhhcchhhHH-----hHHHHHHHHHHhhhhccchhhhhhhH------HH--------Hhcccccccccc--cchhcc
Confidence 3666677777765 34556677788999999999998654 22 457899999998 677765
Q ss_pred HHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEec
Q 000665 371 DGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDL 450 (1363)
Q Consensus 371 ~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL 450 (1363)
.. .+=.....|..|+|++|. ++ -..++.++.+|+.|||+.|-. .+-.. ..-|..+..|+.|.|
T Consensus 224 vp-----~l~~~gc~L~~L~lrnN~-l~------tL~gie~LksL~~LDlsyNll-~~hse----L~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 224 VP-----QLSMVGCKLQLLNLRNNA-LT------TLRGIENLKSLYGLDLSYNLL-SEHSE----LEPLWSLSSLIVLWL 286 (1096)
T ss_pred cc-----ccchhhhhheeeeecccH-HH------hhhhHHhhhhhhccchhHhhh-hcchh----hhHHHHHHHHHHHhh
Confidence 32 111112238999999993 32 244677889999999999852 11111 122333456889999
Q ss_pred cCCCCCCCCc-hHHHHHHHhcc
Q 000665 451 ERTPLKNSGK-ADGIYQRLGQK 471 (1363)
Q Consensus 451 ~~N~l~~~g~-~~~i~~~l~~~ 471 (1363)
.|||+--.+. -.+.++++..|
T Consensus 287 eGNPl~c~p~hRaataqYl~~~ 308 (1096)
T KOG1859|consen 287 EGNPLCCAPWHRAATAQYLHKN 308 (1096)
T ss_pred cCCccccCHHHHHHHHhHhccc
Confidence 9999887552 23556665544
No 329
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.56 E-value=0.001 Score=77.88 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=39.8
Q ss_pred EEEEEeccCCCCCCchhhHHHHHHHHHHHHHhcc----ccCCCCcEEEEcCCCCCChhHHHHHHHHHHH
Q 000665 630 VTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQG----FVDFYPTVFTIDARSSASVTKLTHHIRKTSR 694 (1363)
Q Consensus 630 VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~----~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~ 694 (1363)
-++|.||+|+.... . ......+++..+.- .....++++.+||.++.|+++|.+.|.+...
T Consensus 197 DIiVVNKaDl~~~~--~---a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 197 DLIVINKADGDNKT--A---ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred heEEeehhcccchh--H---HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 38999999997432 1 11233444443321 1123467899999999999999999987544
No 330
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.56 E-value=2e-05 Score=95.70 Aligned_cols=158 Identities=18% Similarity=0.101 Sum_probs=99.0
Q ss_pred cccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhh
Q 000665 263 TVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPL 342 (1363)
Q Consensus 263 ~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L 342 (1363)
.|...+.+.|.|.. +-+.|.-.+.|+.||||+|++++. ..|..++.|++|||+.|.+....- +
T Consensus 165 ~L~~a~fsyN~L~~-----mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~vp~--l---- 227 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-----MDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHVPQ--L---- 227 (1096)
T ss_pred hHhhhhcchhhHHh-----HHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhccccc--c----
Confidence 46677788887754 223344446688999999999852 257888999999999998874431 1
Q ss_pred hhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeec
Q 000665 343 SRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQG 422 (1363)
Q Consensus 343 ~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~ 422 (1363)
. ..-+.|..|.|+ +|.++..- .+.+.++|..||+++| .+.+ ...|. -|..+..|+.|+|.|
T Consensus 228 ------~-~~gc~L~~L~lr--nN~l~tL~------gie~LksL~~LDlsyN-ll~~--hseL~-pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 228 ------S-MVGCKLQLLNLR--NNALTTLR------GIENLKSLYGLDLSYN-LLSE--HSELE-PLWSLSSLIVLWLEG 288 (1096)
T ss_pred ------c-hhhhhheeeeec--ccHHHhhh------hHHhhhhhhccchhHh-hhhc--chhhh-HHHHHHHHHHHhhcC
Confidence 1 223568999998 56665531 3456678999999999 5544 22222 234567889999999
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEeccCCCCC
Q 000665 423 CKGVRGELVQQAIMETLQVNPWIEDIDLERTPLK 456 (1363)
Q Consensus 423 N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~ 456 (1363)
|..--.+.--.+.++-+..|.--..+-|.+-.|+
T Consensus 289 NPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~ 322 (1096)
T KOG1859|consen 289 NPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALG 322 (1096)
T ss_pred CccccCHHHHHHHHhHhccccCCcceEecceecc
Confidence 9732222222233444443433344455554444
No 331
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.56 E-value=3.7e-06 Score=99.69 Aligned_cols=175 Identities=15% Similarity=0.177 Sum_probs=126.6
Q ss_pred cccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhh
Q 000665 263 TVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPL 342 (1363)
Q Consensus 263 ~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L 342 (1363)
--...||+.|++..... ..+....|+.|.|..|.+. .++.++.++..|+.|||+.|+++..... +|
T Consensus 76 dt~~aDlsrNR~~elp~-----~~~~f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC--- 141 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPE-----EACAFVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDG-LC--- 141 (722)
T ss_pred chhhhhccccccccCch-----HHHHHHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCChh-hh---
Confidence 34567899998866322 2223345778888888886 4777888999999999999999865543 32
Q ss_pred hhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeec
Q 000665 343 SRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQG 422 (1363)
Q Consensus 343 ~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~ 422 (1363)
..-|+.|-++ +|+++. +.+.++...+|..||.+.|+ +..++..+..+.+|+.|++..
T Consensus 142 ----------~lpLkvli~s--NNkl~~-----lp~~ig~~~tl~~ld~s~ne------i~slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 142 ----------DLPLKVLIVS--NNKLTS-----LPEEIGLLPTLAHLDVSKNE------IQSLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred ----------cCcceeEEEe--cCcccc-----CCcccccchhHHHhhhhhhh------hhhchHHhhhHHHHHHHHHhh
Confidence 3578999998 677765 34455666789999999996 678898999999999999999
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCCCCchHHHHHHHhccCCCCCccccccCCC
Q 000665 423 CKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNSGKADGIYQRLGQKGRSEPDIDLLKDMP 485 (1363)
Q Consensus 423 N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~~g~~~~i~~~l~~~~~l~~~~~llk~ip 485 (1363)
|. +..+++.+.. -.|..||++.|.+...+ .-|-.+++.+.+....+=+.+.|
T Consensus 199 n~-------l~~lp~El~~-LpLi~lDfScNkis~iP---v~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 199 NH-------LEDLPEELCS-LPLIRLDFSCNKISYLP---VDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hh-------hhhCCHHHhC-CceeeeecccCceeecc---hhhhhhhhheeeeeccCCCCCCh
Confidence 97 3557778874 44889999999999766 33444555444443344444444
No 332
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.54 E-value=5.1e-05 Score=88.62 Aligned_cols=365 Identities=12% Similarity=0.049 Sum_probs=224.9
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHhcc--CC
Q 000665 81 FHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKV--ND 158 (1363)
Q Consensus 81 Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~--~~ 158 (1363)
|+++. .. +-.+..++.+...-+.|---+-..+.+-...+-.+.+....++.+.|.-|.+.......+...... ++
T Consensus 89 lSHll--hk-L~~ivsaley~~pf~el~a~~~r~e~ev~~sil~v~~~s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnp 165 (553)
T KOG4242|consen 89 LSHLL--HK-LPFIVSALEYAEPFPELAAPGERAEPEVGPSILGVPSPSAPLPPLGLLPCMLLPDFGQKLRHSTRARPNP 165 (553)
T ss_pred hhhcc--hh-hhHHHhhhhhcccCccccchhhhccccccchhhccccccccCCccCchhccCchhhcccccchhhcCCcc
Confidence 66652 22 444666666665556554444444444333444445555678888999888887666666555443 45
Q ss_pred CccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCCCCChHHHHHHHH--HhCCCceEEEccCCCCcc-hhHHHhhc
Q 000665 159 TLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVL--ARNRAMEVHVWSGENGEK-SSKVVEFL 235 (1363)
Q Consensus 159 sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l--~~~~~L~~L~Ls~n~~~~-~~~l~~~L 235 (1363)
.+++++++.|.+++++.-+|.... ++ |+++.|...... +.... ..-..++.++|+.|.+.+ ...+.+..
T Consensus 166 r~r~~dls~npi~dkvpihl~~p~--~p----l~lr~c~lsskf--is~l~~qsg~~~lteldls~n~~Kddip~~~n~~ 237 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDKVPIHLPQPG--NP----LSLRVCELSSKF--ISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKK 237 (553)
T ss_pred hhhhhccCCCcccccCCccccCCC--Cc----cchhhhhhhhhH--HHHhhhhhccccccccccccCCCCccchhHHHHh
Confidence 689999999999998877665321 22 777777654321 22222 222368999999996433 33355555
Q ss_pred CCCCcceeeccCchhHH--HHHHHh--cCCCcccEEEccCCCCCh----HHHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 000665 236 PENGTLRIYRLDVSGSC--RVACSL--GCNTTVKSLDMTGVRLKS----RWAKEFRWVLQQNQSLKEVILSKTCLKDKGV 307 (1363)
Q Consensus 236 ~~~~~L~~L~Ls~~g~~--~L~~~L--~~~~~L~~LdLs~N~L~~----~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~ 307 (1363)
..+..++.++.+..|.. .+...+ ..-+.|+..+++.|..+. ++.....+....-.++ +|++..+..-++-.
T Consensus 238 a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~l 316 (553)
T KOG4242|consen 238 AGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKL 316 (553)
T ss_pred hhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhh
Confidence 66677777776655542 222222 334678888998887643 3344444444445677 88888888877766
Q ss_pred HHHHHHHhcCCCCC--EEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcc
Q 000665 308 VYVAAGLFKNRSLE--SLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNET 385 (1363)
Q Consensus 308 ~~L~~~L~~~~~L~--~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~ 385 (1363)
..+.-++..+.... .+|++.+...+..+ +-.+ ..-..+++|.+. .|++...|.... .+..+++
T Consensus 317 ks~LLgla~ne~t~g~rldl~~cp~~~a~v--leac---------i~g~R~q~l~~r--dnnldgeg~~vg--k~~~s~s 381 (553)
T KOG4242|consen 317 KSMLLGLAENEATLGARLDLRRCPLERAEV--LEAC---------IFGQRVQVLLQR--DNNLDGEGGAVG--KRKQSKS 381 (553)
T ss_pred hhhhcccccccccccccCChhhccccccch--hhcc---------ccceeeeEeecc--cccccccccccc--ceeeccc
Confidence 66554554444333 56666655544332 2111 223458899887 577766664333 5677788
Q ss_pred eEEEEecCCCC--CCHHHHHHHHHHHhh--CCCccEEEeecCCCCCChhHHHHHHHHHhcCCCccEEeccCCCCCCCCch
Q 000665 386 VTQLGIYDDQS--LRPDDFVRIFKSLQK--NASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNSGKA 461 (1363)
Q Consensus 386 L~~L~Ls~N~~--i~~~gl~~L~~~L~~--~~~L~~L~Ls~N~~~i~~~~~~~L~~~L~~n~~L~~LdL~~N~l~~~g~~ 461 (1363)
++.+++..-.. +-+.+......++.. ..-+..+.++-|.. ..++......+..++++..|++++|..++.| .
T Consensus 382 ~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~l---ka~l~s~in~l~stqtl~kldisgn~mgd~g-a 457 (553)
T KOG4242|consen 382 GRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPL---KAGLESAINKLLSTQTLAKLDISGNGMGDGG-A 457 (553)
T ss_pred cccccccccCCceeccccccchhhhhhhcccccccCcccCCCcc---cccHHHHHHhhccCcccccccccCCCcccCC-C
Confidence 88888866322 222222222222222 45677888888872 2356778888888999999999999999988 5
Q ss_pred HHHHHHHhccCCCCC
Q 000665 462 DGIYQRLGQKGRSEP 476 (1363)
Q Consensus 462 ~~i~~~l~~~~~l~~ 476 (1363)
.-+.+++..|.++..
T Consensus 458 p~lpkalq~n~rlr~ 472 (553)
T KOG4242|consen 458 PPLPKALQSNCRLRP 472 (553)
T ss_pred CcCccccCCCCccCC
Confidence 677777777766543
No 333
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00057 Score=82.31 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=93.3
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe-c--CceEEEEEecCCchhhhhcc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-D--EDTRISIWNLAGQHEFYSLH 569 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~--~~~~l~iWDfaGQe~y~~th 569 (1363)
-+.++|.-.-|||||+..+.+..-... +.---|..|--..+. + +...+.+.||+||+-|-.+.
T Consensus 7 vVtimGHVDHGKTtLLD~IR~t~Va~~--------------EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mR 72 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIRKTNVAAG--------------EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMR 72 (509)
T ss_pred EEEEeCcccCCccchhhhHhcCccccc--------------cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHH
Confidence 478899999999999999997621100 000012212222222 1 45689999999999988876
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
.-=-. -..+.+||+++.+- -.+++.+ . ++..++ . .-|+++..||+|++.......
T Consensus 73 aRGa~---vtDIaILVVa~dDG------v~pQTiE-A----I~hak~--a-------~vP~iVAiNKiDk~~~np~~v-- 127 (509)
T COG0532 73 ARGAS---VTDIAILVVAADDG------VMPQTIE-A----INHAKA--A-------GVPIVVAINKIDKPEANPDKV-- 127 (509)
T ss_pred hcCCc---cccEEEEEEEccCC------cchhHHH-H----HHHHHH--C-------CCCEEEEEecccCCCCCHHHH--
Confidence 54223 67889999999752 1234431 1 122222 1 237999999999985432211
Q ss_pred HHHHHHHHH------HHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 650 TVSSIQRLK------DKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 650 ~~~~~~~lr------~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..++. +.|.+. -.++.+||++|.|+++|...|.-
T Consensus 128 ----~~el~~~gl~~E~~gg~----v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 128 ----KQELQEYGLVPEEWGGD----VIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred ----HHHHHHcCCCHhhcCCc----eEEEEeeccCCCCHHHHHHHHHH
Confidence 12222 123332 24678899999999999887653
No 334
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0012 Score=70.32 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=72.3
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLM 572 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~F 572 (1363)
.++++|..++|||+|--.|..+ ++.+|... .++. ...|..+....++.|+.||+.-+.----+
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~g---s~~~TvtS-------iepn-------~a~~r~gs~~~~LVD~PGH~rlR~kl~e~ 102 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITG---SHRGTVTS-------IEPN-------EATYRLGSENVTLVDLPGHSRLRRKLLEY 102 (238)
T ss_pred cEEEEecCCCCceeeeeehhcC---CccCeeee-------eccc-------eeeEeecCcceEEEeCCCcHHHHHHHHHH
Confidence 6899999999999999999876 11122111 1111 11233444558999999998644333222
Q ss_pred cccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 573 FPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 573 lt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
+...-.....+.|+|... ...+. ..+...|-.|-..... ..+.|||+|.+||.|+.....
T Consensus 103 ~~~~~~akaiVFVVDSa~--------f~k~v-rdvaefLydil~~~~~---~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 103 LKHNYSAKAIVFVVDSAT--------FLKNV-RDVAEFLYDILLDSRV---KKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred ccccccceeEEEEEeccc--------cchhh-HHHHHHHHHHHHhhcc---ccCCCCEEEEecchhhhhcCc
Confidence 331113455677778653 11223 4445555555543221 134688999999999976543
No 335
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00065 Score=80.10 Aligned_cols=145 Identities=23% Similarity=0.298 Sum_probs=90.8
Q ss_pred CCCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhh
Q 000665 488 EPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 488 ~~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~ 567 (1363)
.++.+-+.++|++|+|||||+++|...++... +.. +..| |+-+.++.-++.+..+. ...++
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~t---i~~---i~GP-----------iTvvsgK~RRiTflEcp--~Dl~~ 126 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT---IDE---IRGP-----------ITVVSGKTRRITFLECP--SDLHQ 126 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhh---hhc---cCCc-----------eEEeecceeEEEEEeCh--HHHHH
Confidence 34567788999999999999999998765432 221 1112 22234667788888887 33444
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
+-.. ..-+.+.||+.|..= ....++ -.+|+.+.. .+.|.|+.|.||.|+...+
T Consensus 127 miDv----aKIaDLVlLlIdgnf------GfEMET-----mEFLnil~~--------HGmPrvlgV~ThlDlfk~~---- 179 (1077)
T COG5192 127 MIDV----AKIADLVLLLIDGNF------GFEMET-----MEFLNILIS--------HGMPRVLGVVTHLDLFKNP---- 179 (1077)
T ss_pred HHhH----HHhhheeEEEecccc------CceehH-----HHHHHHHhh--------cCCCceEEEEeecccccCh----
Confidence 3332 114678888888531 011111 234555544 2357899999999997543
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCC
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARS 678 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~ 678 (1363)
...++..++|+++|..-+.-..++|.+|...
T Consensus 180 stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 180 STLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred HHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 2334567788888875433334788888654
No 336
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.47 E-value=0.00066 Score=80.43 Aligned_cols=162 Identities=10% Similarity=0.114 Sum_probs=97.1
Q ss_pred CCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCC
Q 000665 516 SSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNR 595 (1363)
Q Consensus 516 ~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~ 595 (1363)
...+.||..++-.. ..+|.|+....+.-++..+.+||.|||..++..|..|+. .....+.|+|+++-....
T Consensus 154 ~~~y~Pt~~Dil~~------r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~---~v~~IiFvvdlSd~d~~~ 224 (342)
T smart00275 154 DPDYVPTEQDILRS------RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFD---NVTAIIFCVALSEYDQVL 224 (342)
T ss_pred CCCCCCCHHHhhhe------eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhC---CCCEEEEEEECcccccch
Confidence 34566665442221 234889999999888999999999999999999999999 778889999998521110
Q ss_pred -CCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc------------hhhHHHHHHHHHHHHHhc
Q 000665 596 -EPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS------------QDMQLTVSSIQRLKDKFQ 662 (1363)
Q Consensus 596 -~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~------------~~~~~~~~~~~~lr~~f~ 662 (1363)
|..+...+.+.+..|=..+.... -...|++|++||.|.....- .......+..+.++.+|.
T Consensus 225 ~Ed~~~nrl~esl~~f~~l~~~~~------~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~ 298 (342)
T smart00275 225 EEDESTNRMQESLNLFESICNSRW------FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFL 298 (342)
T ss_pred hccCcchHHHHHHHHHHHHHcCcc------ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHH
Confidence 11112233333333322222210 11237999999999863210 001223455666777776
Q ss_pred cccCC-C-Cc--EEEEcCCCCCChhHHHHHHHHH
Q 000665 663 GFVDF-Y-PT--VFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 663 ~~~~i-~-~~--v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
....- . .. ++.++|++..++..+++.+.+.
T Consensus 299 ~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~ 332 (342)
T smart00275 299 RLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDI 332 (342)
T ss_pred HhccCCCCceEEEEEeeecccHHHHHHHHHHHHH
Confidence 54221 1 11 3455677777777777766653
No 337
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.46 E-value=0.00041 Score=81.29 Aligned_cols=168 Identities=14% Similarity=0.170 Sum_probs=96.3
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe---------cCceEEEEEecCCch
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK---------DEDTRISIWNLAGQH 563 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~---------~~~~~l~iWDfaGQe 563 (1363)
+..++-.-.-|||||..+|.+.-...... ..+..+-..-.-++..||.|+-.. ++...|++.||.||-
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~R---em~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSER---EMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChH---HHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 34456666789999999998651110000 000000000022456777776432 467899999999998
Q ss_pred hhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCC
Q 000665 564 EFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQP 643 (1363)
Q Consensus 564 ~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~ 643 (1363)
.|..--.-=+. .....|||+|++.. -+.+.--..|+. +.. .--||-|.||+|++...
T Consensus 88 DFsYEVSRSLA---ACEGalLvVDAsQG---------veAQTlAN~YlA-le~----------~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 88 DFSYEVSRSLA---ACEGALLVVDASQG---------VEAQTLANVYLA-LEN----------NLEIIPVLNKIDLPAAD 144 (603)
T ss_pred ceEEEehhhHh---hCCCcEEEEECccc---------hHHHHHHHHHHH-HHc----------CcEEEEeeecccCCCCC
Confidence 87443332244 56678999999841 112111222322 221 11489999999997654
Q ss_pred chhhHHHHHHHHHHHHHhccccCCC-CcEEEEcCCCCCChhHHHHHHHHHHHHHHhhcCch
Q 000665 644 SQDMQLTVSSIQRLKDKFQGFVDFY-PTVFTIDARSSASVTKLTHHIRKTSRTILQRVPRV 703 (1363)
Q Consensus 644 ~~~~~~~~~~~~~lr~~f~~~~~i~-~~v~~vs~~~~~~i~~L~~~L~~~~~~i~~~~P~~ 703 (1363)
.++ . .+++.+-+ .+. ...+.+|+++|.||+++.++|. +++|..
T Consensus 145 per---v---k~eIe~~i----Gid~~dav~~SAKtG~gI~~iLe~Iv-------~~iP~P 188 (603)
T COG0481 145 PER---V---KQEIEDII----GIDASDAVLVSAKTGIGIEDVLEAIV-------EKIPPP 188 (603)
T ss_pred HHH---H---HHHHHHHh----CCCcchheeEecccCCCHHHHHHHHH-------hhCCCC
Confidence 332 1 23333332 222 3467799999999999876554 466665
No 338
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.44 E-value=0.0019 Score=73.63 Aligned_cols=169 Identities=17% Similarity=0.145 Sum_probs=92.1
Q ss_pred eEEecCccccchHHHHHHHhhcCCCC-CCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCch----hhhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSS-KLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQH----EFYS 567 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~-~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe----~y~~ 567 (1363)
-+=+||-++||||||++++....++. .+|++.- ...-|+-- . +..-.|.+=|..|-- +=..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL-----------~PnLGvV~--~-~~~~sfv~ADIPGLIEGAs~G~G 226 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTL-----------VPNLGVVR--V-DGGESFVVADIPGLIEGASEGVG 226 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccc-----------cCcccEEE--e-cCCCcEEEecCcccccccccCCC
Confidence 35589999999999999998763221 1222111 11233222 1 445568888988722 1122
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
+=.-||+-.....+.+-|.|++..+ ..++.+....+..=|..-.... ..+ |-+||+||+|..... +.
T Consensus 227 LG~~FLrHIERt~vL~hviD~s~~~----~~dp~~~~~~i~~EL~~Y~~~L------~~K-~~ivv~NKiD~~~~~-e~- 293 (369)
T COG0536 227 LGLRFLRHIERTRVLLHVIDLSPID----GRDPIEDYQTIRNELEKYSPKL------AEK-PRIVVLNKIDLPLDE-EE- 293 (369)
T ss_pred ccHHHHHHHHhhheeEEEEecCccc----CCCHHHHHHHHHHHHHHhhHHh------ccC-ceEEEEeccCCCcCH-HH-
Confidence 2223555333677888899998522 1233333333333332222111 112 478999999975322 22
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRT 695 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~ 695 (1363)
.....+.+.+.+. ....++ ||+.++.|++.|...+.+.+.+
T Consensus 294 --~~~~~~~l~~~~~----~~~~~~-ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 294 --LEELKKALAEALG----WEVFYL-ISALTREGLDELLRALAELLEE 334 (369)
T ss_pred --HHHHHHHHHHhcC----CCccee-eehhcccCHHHHHHHHHHHHHH
Confidence 2233344443332 122223 9999999999998877765443
No 339
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.42 E-value=0.00066 Score=67.59 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=58.0
Q ss_pred eeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhccc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHD 570 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~ 570 (1363)
+|++++|+.|+|||+|+.++.+. +.. .|+ ..|.| |.....
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~--~~~--------------~~t~~-----------------------~~~~~~ 41 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDY--VPT--------------VFTIG-----------------------IDVYDP 41 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccc--cCc--------------eehhh-----------------------hhhccc
Confidence 38999999999999999999755 221 110 02333 455555
Q ss_pred cccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 571 LMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 571 ~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
.+.+ .....++||+.+. .+.. +.+ |...+....+ ..+|+++||||.|+.
T Consensus 42 ~~~~---s~~~~~~v~~~~~---------~~s~-~~~--~~~~i~~~~k------~dl~~~~~~nk~dl~ 90 (124)
T smart00010 42 TSYE---SFDVVLQCWRVDD---------RDSA-DNK--NVPEVLVGNK------SDLPILVGGNRDVLE 90 (124)
T ss_pred cccC---CCCEEEEEEEccC---------HHHH-HHH--hHHHHHhcCC------CCCcEEEEeechhhH
Confidence 5666 5667788899864 2333 222 8877755222 245789999999984
No 340
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.41 E-value=0.0011 Score=75.82 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=38.3
Q ss_pred EEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 630 VTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 630 VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
-++|.||+|+......+.+ ..++.++...+. ..+|.+|++++.|++++.+.|..
T Consensus 233 DIVVLNKiDLl~~~~~dle---~~~~~lr~lnp~-----a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 233 SLMLLNKVDLLPYLNFDVE---KCIACAREVNPE-----IEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cEEEEEhHHcCcccHHHHH---HHHHHHHhhCCC-----CcEEEEECCCCCCHHHHHHHHHH
Confidence 6999999999643222222 345555554332 36899999999999999988865
No 341
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.0017 Score=77.51 Aligned_cols=152 Identities=17% Similarity=0.205 Sum_probs=94.5
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe-cCceEEEEEecCCchhhhhcccc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK-DEDTRISIWNLAGQHEFYSLHDL 571 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~-~~~~~l~iWDfaGQe~y~~th~~ 571 (1363)
-+.+.|.-.=|||||+..|.+..... .+-.--|.+|--.++. ++.-.+.+-||.||.-|-+|..-
T Consensus 155 VVTiMGHVDHGKTTLLD~lRks~VAA--------------~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaR 220 (683)
T KOG1145|consen 155 VVTIMGHVDHGKTTLLDALRKSSVAA--------------GEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRAR 220 (683)
T ss_pred eEEEeecccCChhhHHHHHhhCceeh--------------hhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhc
Confidence 46788999999999999999762110 0000012222222222 24468889999999999998653
Q ss_pred ccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHH
Q 000665 572 MFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTV 651 (1363)
Q Consensus 572 Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~ 651 (1363)
+..-.++.+||+.+.| +. -+++. +.|+. ++.| .-||++..||+|+.+...+.
T Consensus 221 ---GA~vtDIvVLVVAadD--GV----mpQT~--------EaIkh-Ak~A-----~VpiVvAinKiDkp~a~pek----- 272 (683)
T KOG1145|consen 221 ---GANVTDIVVLVVAADD--GV----MPQTL--------EAIKH-AKSA-----NVPIVVAINKIDKPGANPEK----- 272 (683)
T ss_pred ---cCccccEEEEEEEccC--Cc----cHhHH--------HHHHH-HHhc-----CCCEEEEEeccCCCCCCHHH-----
Confidence 3336788999998764 11 22232 33332 2222 23799999999997544332
Q ss_pred HHHHHHH------HHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 652 SSIQRLK------DKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 652 ~~~~~lr------~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..++|- +.+++. -.++.+|+.+|.|++.|-+.+.-
T Consensus 273 -v~~eL~~~gi~~E~~GGd----VQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 273 -VKRELLSQGIVVEDLGGD----VQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred -HHHHHHHcCccHHHcCCc----eeEEEeecccCCChHHHHHHHHH
Confidence 122222 233333 25789999999999998887653
No 342
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.003 Score=71.08 Aligned_cols=170 Identities=14% Similarity=0.227 Sum_probs=96.3
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEE------Ee-------cCceEEE
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT------LK-------DEDTRIS 555 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~------~~-------~~~~~l~ 555 (1363)
+.++++-++|.-.+|||||.++|..--+...+. ..+..++.||...- .. +++..|.
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFD-----------k~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~t 73 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFD-----------KHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFT 73 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhc-----------cCCcccccceeEeecceeeecccccccCccccceeE
Confidence 345789999999999999999998542211110 01223345544331 11 5678899
Q ss_pred EEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEe
Q 000665 556 IWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLT 635 (1363)
Q Consensus 556 iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgT 635 (1363)
+.|+.||...--+ .+.+.---++.++|.|+... +..++.+. --+..+ ..+..++|.|
T Consensus 74 lvDCPGHasLIRt---iiggaqiiDlm~lviDv~kG------~QtQtAEc---Liig~~-----------~c~klvvvin 130 (522)
T KOG0461|consen 74 LVDCPGHASLIRT---IIGGAQIIDLMILVIDVQKG------KQTQTAEC---LIIGEL-----------LCKKLVVVIN 130 (522)
T ss_pred EEeCCCcHHHHHH---HHhhhheeeeeeEEEehhcc------cccccchh---hhhhhh-----------hccceEEEEe
Confidence 9999998743322 23311123567899998741 11122211 011111 1235788999
Q ss_pred ccCCCCCCchhhHHHHHHHHHHHHHhccc-cCCCCcEEEEcCCCC----CChhHHHHHHHHHH
Q 000665 636 HYDKINQPSQDMQLTVSSIQRLKDKFQGF-VDFYPTVFTIDARSS----ASVTKLTHHIRKTS 693 (1363)
Q Consensus 636 h~D~~~~~~~~~~~~~~~~~~lr~~f~~~-~~i~~~v~~vs~~~~----~~i~~L~~~L~~~~ 693 (1363)
|+|...+. ++..++.++.+++++...+. ++=..++++||+..| ..+.+|++.|++.+
T Consensus 131 kid~lpE~-qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 131 KIDVLPEN-QRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred ccccccch-hhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 99886432 22333444455555433221 122246889999999 67788877776643
No 343
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.35 E-value=0.0019 Score=70.57 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=36.1
Q ss_pred EEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 631 TVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 631 ilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
++|+||.|+......+.+ ...+.++... ...++|.+|+++|.|++++++.|.+
T Consensus 141 ~~~~~k~d~~~~~~~~~~---~~~~~~~~~~-----~~~~i~~~Sa~~g~gi~el~~~i~~ 193 (199)
T TIGR00101 141 LLVINKIDLAPMVGADLG---VMERDAKKMR-----GEKPFIFTNLKTKEGLDTVIDWIEH 193 (199)
T ss_pred EEEEEhhhccccccccHH---HHHHHHHHhC-----CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 899999999742222222 2233444321 1356899999999999999998875
No 344
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.0016 Score=73.97 Aligned_cols=169 Identities=16% Similarity=0.233 Sum_probs=99.7
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCC---Ccceeeccc----ccccc--------cCccCCcceEEE----EEecC
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSK---LPYIEQVRT----LVNPV--------EQAVRPVGMKIK----TLKDE 550 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~---~~t~~~~~~----~~~p~--------~~~~~T~Gi~i~----~~~~~ 550 (1363)
..++++.||.-.=|||||+-+|..+-...+ +..+...+. ..... -+.++..||.|. .+..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 347999999999999999999986511100 000110000 00000 023556676654 24467
Q ss_pred ceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeE
Q 000665 551 DTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNV 630 (1363)
Q Consensus 551 ~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~V 630 (1363)
+-+|.|=|+.||++|-- -+.|+...+.+.+|++|+.. ...++..+ +-.+..+-. -..|
T Consensus 85 KRkFIiADTPGHeQYTR---NMaTGASTadlAIlLVDAR~--------Gvl~QTrR-Hs~I~sLLG----------Irhv 142 (431)
T COG2895 85 KRKFIIADTPGHEQYTR---NMATGASTADLAILLVDARK--------GVLEQTRR-HSFIASLLG----------IRHV 142 (431)
T ss_pred cceEEEecCCcHHHHhh---hhhcccccccEEEEEEecch--------hhHHHhHH-HHHHHHHhC----------CcEE
Confidence 88999999999999853 45665557889999999863 22222111 222222111 2259
Q ss_pred EEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCC-cEEEEcCCCCCChhH
Q 000665 631 TVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYP-TVFTIDARSSASVTK 684 (1363)
Q Consensus 631 ilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~-~v~~vs~~~~~~i~~ 684 (1363)
++..||+|++...++..+.+.+-...+.++ +.+.+ .++++|+..|.|+-.
T Consensus 143 vvAVNKmDLvdy~e~~F~~I~~dy~~fa~~----L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 143 VVAVNKMDLVDYSEEVFEAIVADYLAFAAQ----LGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred EEEEeeecccccCHHHHHHHHHHHHHHHHH----cCCCcceEEechhccCCcccc
Confidence 999999999876555444333222222223 23332 578899999988743
No 345
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.28 E-value=0.00075 Score=76.26 Aligned_cols=173 Identities=20% Similarity=0.252 Sum_probs=91.5
Q ss_pred CceeEEecCccccchHHHHHHHhhc-C-CCCC-----------------Ccceee-------cccccccccCccCCcc--
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-F-SSSK-----------------LPYIEQ-------VRTLVNPVEQAVRPVG-- 541 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~-~~~~-----------------~~t~~~-------~~~~~~p~~~~~~T~G-- 541 (1363)
-.+++.+||+-.+|||||+-.|..+ . ++-. ...+++ ..++++..+ .+|
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD----~Hg~~ 207 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPD----PHGHN 207 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCC----CCCCc
Confidence 4689999999999999998888654 1 1100 000000 111111111 122
Q ss_pred eEEEEEe-cCceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchh
Q 000665 542 MKIKTLK-DEDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRR 620 (1363)
Q Consensus 542 i~i~~~~-~~~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~ 620 (1363)
.++...- +..--+.+.|.||||.|..|.-|=+++|- .+.-+|+.-..-. -.....+. |...-+ -
T Consensus 208 LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~-PDf~MLMiGaNaG-------IiGmTKEH----LgLALa---L 272 (641)
T KOG0463|consen 208 LDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHM-PDFTMLMIGANAG-------IIGMTKEH----LGLALA---L 272 (641)
T ss_pred ccceeeccccceeEEEEeccchhhhhheeeeccccCC-CCceEEEeccccc-------ceeccHHh----hhhhhh---h
Confidence 2222221 22335678899999999999999899884 5555665543210 00011111 111111 0
Q ss_pred hhhccCCCeEEEEEeccCCCCCCchhhHHHHHHHHHHHHH-hcc-c--------------cCCC----CcEEEEcCCCCC
Q 000665 621 AVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRLKDK-FQG-F--------------VDFY----PTVFTIDARSSA 680 (1363)
Q Consensus 621 av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~-f~~-~--------------~~i~----~~v~~vs~~~~~ 680 (1363)
.-||++|.||+|.|.. .-.|+....+.++-+. -.. . .++. -++|.||+.+|.
T Consensus 273 ------~VPVfvVVTKIDMCPA--NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~ 344 (641)
T KOG0463|consen 273 ------HVPVFVVVTKIDMCPA--NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGT 344 (641)
T ss_pred ------cCcEEEEEEeeccCcH--HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCC
Confidence 1279999999999843 2334333333333221 000 0 1111 146888888888
Q ss_pred ChhHHHHHH
Q 000665 681 SVTKLTHHI 689 (1363)
Q Consensus 681 ~i~~L~~~L 689 (1363)
+++-|+..|
T Consensus 345 NL~LLkmFL 353 (641)
T KOG0463|consen 345 NLPLLKMFL 353 (641)
T ss_pred ChHHHHHHH
Confidence 877665443
No 346
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.28 E-value=0.0044 Score=76.82 Aligned_cols=121 Identities=19% Similarity=0.186 Sum_probs=70.4
Q ss_pred CceeEEecCccccchHHHHHHHhhc--CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN--FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~--~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~ 567 (1363)
..++++++|.+|+||||++++|.+. +..... ...|..+...........+.|+||+|-.....
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~---------------~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAF---------------GMGTTSVQEIEGLVQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCC---------------CCCceEEEEEEEEECCceEEEEECCCCCcccc
Confidence 3478999999999999999999976 221100 01122221111122457899999999554321
Q ss_pred -----------ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEec
Q 000665 568 -----------LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTH 636 (1363)
Q Consensus 568 -----------th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh 636 (1363)
+.. |+... +..++|+|..+... ..+. .-..+++.|...-...+ ...+|||.||
T Consensus 182 dq~~neeILk~Ik~-~Lsk~-gpDVVLlV~RLd~~-------~~D~---eD~~aLr~Iq~lFG~~I----wk~tIVVFTh 245 (763)
T TIGR00993 182 DQSKNEKILSSVKK-FIKKN-PPDIVLYVDRLDMQ-------TRDS---NDLPLLRTITDVLGPSI----WFNAIVTLTH 245 (763)
T ss_pred chHHHHHHHHHHHH-HHhcC-CCCEEEEEEeCCCc-------cccH---HHHHHHHHHHHHhCHHh----HcCEEEEEeC
Confidence 112 33322 35678888776421 1111 12356777765332222 4469999999
Q ss_pred cCCCC
Q 000665 637 YDKIN 641 (1363)
Q Consensus 637 ~D~~~ 641 (1363)
+|...
T Consensus 246 gD~lp 250 (763)
T TIGR00993 246 AASAP 250 (763)
T ss_pred CccCC
Confidence 99974
No 347
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.27 E-value=2.8e-05 Score=95.04 Aligned_cols=201 Identities=16% Similarity=0.105 Sum_probs=106.9
Q ss_pred HhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCCChhhHH
Q 000665 97 LLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAE 176 (1363)
Q Consensus 97 ~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~ 176 (1363)
.+..+.+|+.|++.+|.|....- .+..+++|+.|+|+.|.|+.. ..+..+..|+.|++++|.|.+..
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~~~-- 156 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISDIS-- 156 (414)
T ss_pred ccccccceeeeeccccchhhccc-----chhhhhcchheeccccccccc------cchhhccchhhheeccCcchhcc--
Confidence 34566777777777777655322 133456777777777777631 22333444777777777776521
Q ss_pred HHHHHHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCchhHHHHHH
Q 000665 177 ELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVAC 256 (1363)
Q Consensus 177 ~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~ 256 (1363)
.+.....|+.+++++|.+..-... . +..+.+++.+.+++|...... .+.....+..+++.++.+..+.
T Consensus 157 ----~~~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~n~i~~~~- 224 (414)
T KOG0531|consen 157 ----GLESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLDNKISKLE- 224 (414)
T ss_pred ----CCccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCchhccc----chHHHHHHHHhhcccccceecc-
Confidence 122245677777777754221110 1 355566777777777311110 0111111111122222222111
Q ss_pred HhcCCC--cccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHh
Q 000665 257 SLGCNT--TVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGV 333 (1363)
Q Consensus 257 ~L~~~~--~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~ 333 (1363)
.+.... .|+.+++++|.+.... ..+.....+..|++++|.+.... .+.....+..+.++.|.+...
T Consensus 225 ~l~~~~~~~L~~l~l~~n~i~~~~-----~~~~~~~~l~~l~~~~n~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 292 (414)
T KOG0531|consen 225 GLNELVMLHLRELYLSGNRISRSP-----EGLENLKNLPVLDLSSNRISNLE------GLERLPKLSELWLNDNKLALS 292 (414)
T ss_pred CcccchhHHHHHHhcccCcccccc-----ccccccccccccchhhccccccc------cccccchHHHhccCcchhcch
Confidence 111122 2788888888886532 34555677888888888876422 234455566666677766543
No 348
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.0011 Score=85.13 Aligned_cols=79 Identities=16% Similarity=0.064 Sum_probs=44.4
Q ss_pred hcCCCcccEEEccCCCCCh-HHHHHHHHHHhhCCCccEEEccCCCCChHH--HHHHHHHHhcCCCCCEEEccCCCCCHhh
Q 000665 258 LGCNTTVKSLDMTGVRLKS-RWAKEFRWVLQQNQSLKEVILSKTCLKDKG--VVYVAAGLFKNRSLESLYLHGNWFSGVG 334 (1363)
Q Consensus 258 L~~~~~L~~LdLs~N~L~~-~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g--~~~L~~~L~~~~~L~~LdLs~N~l~~~g 334 (1363)
++.+++|+.|.+.+-.+.+ .... .|...++|+.||+|.....+.. +....+.-..++.|+.||.|++.++..-
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~----~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLI----DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHH----HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 3555666666666555544 2222 2334567777777766554433 1111112234778888888888887776
Q ss_pred HHHHHh
Q 000665 335 VEHLLC 340 (1363)
Q Consensus 335 ~~~L~~ 340 (1363)
++.+..
T Consensus 267 le~ll~ 272 (699)
T KOG3665|consen 267 LEELLN 272 (699)
T ss_pred HHHHHH
Confidence 666543
No 349
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0022 Score=71.92 Aligned_cols=175 Identities=18% Similarity=0.247 Sum_probs=99.0
Q ss_pred CCceeEEecCccccchHHHHHHHhhcCCCCCCcce--------ee--cccccccccC---------ccCCcceEEEEEec
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYI--------EQ--VRTLVNPVEQ---------AVRPVGMKIKTLKD 549 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~--------~~--~~~~~~p~~~---------~~~T~Gi~i~~~~~ 549 (1363)
.+++.+-++|.-.-|||||+++|.+-+......-+ +- ..-+..|.-. .-...|-+. .
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~----~ 83 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAET----E 83 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCc----c
Confidence 45689999999999999999999875322110000 00 0000001000 000011110 0
Q ss_pred CceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCe
Q 000665 550 EDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPN 629 (1363)
Q Consensus 550 ~~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~ 629 (1363)
-.-++++.|..|||..-+| ++++..=-+..+||..+.+..- .|++.+++ .=|+.|.- -.
T Consensus 84 l~R~VSfVDaPGHe~LMAT---MLsGAAlMDgAlLvIaANEpcP--QPQT~EHl-----~AleIigi-----------k~ 142 (415)
T COG5257 84 LVRRVSFVDAPGHETLMAT---MLSGAALMDGALLVIAANEPCP--QPQTREHL-----MALEIIGI-----------KN 142 (415)
T ss_pred EEEEEEEeeCCchHHHHHH---HhcchhhhcceEEEEecCCCCC--CCchHHHH-----HHHhhhcc-----------ce
Confidence 1236899999999988887 6773222234788888764221 12221111 12333322 14
Q ss_pred EEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 630 VTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 630 VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
||||.||+|+++ .+++.+..+++++-.++...-..+++++|+..+.||+.|.++|.+.+
T Consensus 143 iiIvQNKIDlV~-----~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 143 IIIVQNKIDLVS-----RERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred EEEEecccceec-----HHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 999999999974 23333444555544333322234789999999999999999888744
No 350
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.20 E-value=0.0013 Score=84.45 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=32.6
Q ss_pred CCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCH
Q 000665 261 NTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSG 332 (1363)
Q Consensus 261 ~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~ 332 (1363)
+++|++|.+++-.+.... |.....+.++|..||+|++++++. .++..+++|+.|.+.+=.+..
T Consensus 147 LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl------~GIS~LknLq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL------SGISRLKNLQVLSMRNLEFES 209 (699)
T ss_pred CcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc------HHHhccccHHHHhccCCCCCc
Confidence 355556666555554433 333333445566666666665542 344555666666555544443
No 351
>PTZ00416 elongation factor 2; Provisional
Probab=97.18 E-value=0.0012 Score=87.07 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=84.6
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE------EEe--------cCceEEEEE
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK------TLK--------DEDTRISIW 557 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~------~~~--------~~~~~l~iW 557 (1363)
-++.++|..++|||||+.+|.........+..+..+ ..-..+.++-.|+.+. .|. ++...+++.
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~--~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDAR--FTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCcee--ecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 388999999999999999998641110001111111 0001122333444443 232 125789999
Q ss_pred ecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEecc
Q 000665 558 NLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHY 637 (1363)
Q Consensus 558 DfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~ 637 (1363)
|++|+..|......-+. ...+.|+|+|+.+.. ....+ ..| +.+... ..|+++|.||+
T Consensus 98 DtPG~~~f~~~~~~al~---~~D~ailVvda~~g~--------~~~t~--~~~-~~~~~~---------~~p~iv~iNK~ 154 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALR---VTDGALVVVDCVEGV--------CVQTE--TVL-RQALQE---------RIRPVLFINKV 154 (836)
T ss_pred cCCCHHhHHHHHHHHHh---cCCeEEEEEECCCCc--------CccHH--HHH-HHHHHc---------CCCEEEEEECh
Confidence 99999998776655566 678889999987521 11111 233 333221 12589999999
Q ss_pred CCC----CCCc-hhhHHHHHHHHHHHHHhc
Q 000665 638 DKI----NQPS-QDMQLTVSSIQRLKDKFQ 662 (1363)
Q Consensus 638 D~~----~~~~-~~~~~~~~~~~~lr~~f~ 662 (1363)
|+. ..+. +-...+...++.++..+.
T Consensus 155 D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 155 DRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred hhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 996 3221 223445566777776554
No 352
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.18 E-value=0.007 Score=70.68 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=37.6
Q ss_pred eEEEEEeccCCCCCCchhhHHHHHHH-HHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHH
Q 000665 629 NVTVVLTHYDKINQPSQDMQLTVSSI-QRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRT 695 (1363)
Q Consensus 629 ~VilVgTh~D~~~~~~~~~~~~~~~~-~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~ 695 (1363)
|.++|.||+|+..... ........ ..+.........+.++++.+||+++.|++++.+.|.+....
T Consensus 174 ~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~ 239 (300)
T TIGR00750 174 ADIYVVNKADGEGATN--VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTF 239 (300)
T ss_pred ccEEEEEcccccchhH--HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 4799999999964321 11111000 11111001111223468999999999999999999875443
No 353
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.16 E-value=0.002 Score=85.31 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=80.6
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEE------Ee--------------cCc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT------LK--------------DED 551 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~------~~--------------~~~ 551 (1363)
.++.++|..++|||||+.+|............+..+ ..-..+.++..|+.+.. |. +..
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~--~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR--MTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCcee--eccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 489999999999999999998652110000001101 00011112233433331 21 236
Q ss_pred eEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEE
Q 000665 552 TRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVT 631 (1363)
Q Consensus 552 ~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vi 631 (1363)
..+++.|++||..|...-..-++ .....|+|+|+.+.. ....+ ..|=..+.. .-|++
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~---~~D~ailVvda~~Gv--------~~~t~--~~~~~~~~~----------~~p~i 154 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALR---ITDGALVVVDCIEGV--------CVQTE--TVLRQALGE----------RIRPV 154 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHh---hcCEEEEEEECCCCC--------cccHH--HHHHHHHHC----------CCCEE
Confidence 78899999999999877666566 678889999987421 11111 233222222 11589
Q ss_pred EEEeccCCCCC-----CchhhHHHHHHHHHHH
Q 000665 632 VVLTHYDKINQ-----PSQDMQLTVSSIQRLK 658 (1363)
Q Consensus 632 lVgTh~D~~~~-----~~~~~~~~~~~~~~lr 658 (1363)
++.||+|+.-. +.+....+...++.++
T Consensus 155 ~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in 186 (843)
T PLN00116 155 LTVNKMDRCFLELQVDGEEAYQTFSRVIENAN 186 (843)
T ss_pred EEEECCcccchhhcCCHHHHHHHHHHHHHHHH
Confidence 99999999621 1111234455666665
No 354
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0038 Score=75.54 Aligned_cols=180 Identities=12% Similarity=0.172 Sum_probs=101.2
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcc----------eee--c-ccccccccCccCCcceEEE----EEecCce
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPY----------IEQ--V-RTLVNPVEQAVRPVGMKIK----TLKDEDT 552 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t----------~~~--~-~~~~~p~~~~~~T~Gi~i~----~~~~~~~ 552 (1363)
..+.++++|.-.+||+||...|........... +|. + .-|+-....++|-.||.+. .+..+.-
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 467899999999999999998875421110000 000 0 0011111234566665433 3446778
Q ss_pred EEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEE
Q 000665 553 RISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTV 632 (1363)
Q Consensus 553 ~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vil 632 (1363)
.+.+-|+.||..|-. -++++...+.+++||+|++... ...+++ ...+...-...+++.. -..+|+
T Consensus 256 ~~tliDaPGhkdFi~---nmi~g~sqaD~avLvvd~s~~~---FE~gfd-~~gQtrEha~llr~Lg--------i~qliv 320 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIP---NMISGASQADVAVLVVDASTGE---FESGFD-PGGQTREHALLLRSLG--------ISQLIV 320 (603)
T ss_pred eEEEecCCCccccch---hhhccccccceEEEEEECCcch---hhhccC-CCCchHHHHHHHHHcC--------cceEEE
Confidence 899999999654432 2344444678999999997521 111111 1123333333333321 125899
Q ss_pred EEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhH
Q 000665 633 VLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTK 684 (1363)
Q Consensus 633 VgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~ 684 (1363)
+.||.|.++=.+.+.++++..+...-.+-.++.+-.-..+++|..+|.|+-.
T Consensus 321 aiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 321 AINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred EeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 9999999865545555554444333212223322222578899999988633
No 355
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.00 E-value=0.0023 Score=72.34 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=66.8
Q ss_pred hhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCC
Q 000665 563 HEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 563 e~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~ 642 (1363)
+.|..+.+.++. ....+++|||+++ +......+..||..+.. . ..|++||+||+|+...
T Consensus 24 eR~~~L~r~~~~---n~D~viiV~d~~~---------p~~s~~~l~r~l~~~~~--~-------~i~~vIV~NK~DL~~~ 82 (245)
T TIGR00157 24 ERKNELTRPIVA---NIDQIVIVSSAVL---------PELSLNQLDRFLVVAEA--Q-------NIEPIIVLNKIDLLDD 82 (245)
T ss_pred cccceEECcccc---cCCEEEEEEECCC---------CCCCHHHHHHHHHHHHH--C-------CCCEEEEEECcccCCC
Confidence 788888888998 7899999999974 22112557999987654 1 2368999999999642
Q ss_pred CchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 643 PSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 643 ~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
..... +..+ .|.. ..-.+|.+|++++.|+++|++.|.+
T Consensus 83 ~~~~~----~~~~----~~~~---~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 83 EDMEK----EQLD----IYRN---IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHHH----HHHH----HHHH---CCCeEEEEecCCchhHHHHHhhhcC
Confidence 21111 1122 2221 1125789999999999999987764
No 356
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.92 E-value=0.0037 Score=81.76 Aligned_cols=124 Identities=10% Similarity=0.125 Sum_probs=72.1
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEE------EE--ecCceEEEEEecCCch
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIK------TL--KDEDTRISIWNLAGQH 563 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~------~~--~~~~~~l~iWDfaGQe 563 (1363)
-.+.++|..++|||||+.+|............+... .....+.++..|+.+. .| .+++..+++.|++|+.
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~--~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQL--ALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcce--ecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 368999999999999999998641110000001000 0000111222333322 23 4467899999999999
Q ss_pred hhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 564 EFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 564 ~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
.|...-...++ ...+.|+|+|..+.. .. .....|-..... +. |+|+|.||+|+.
T Consensus 99 df~~~~~~~l~---~~D~avlVvda~~g~------~~----~t~~~~~~~~~~---------~~-~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMR---AVDGAIVVVDAVEGV------MP----QTETVLRQALRE---------RV-KPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHH---hcCEEEEEEECCCCC------Cc----cHHHHHHHHHHc---------CC-CeEEEEECchhh
Confidence 98765555566 678899999986421 11 112334332222 12 368999999986
No 357
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.89 E-value=0.0045 Score=69.36 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=20.7
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
++.++|+.|+||||+++++.+.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCC
Confidence 7999999999999999999975
No 358
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.89 E-value=0.0052 Score=65.19 Aligned_cols=161 Identities=11% Similarity=0.093 Sum_probs=87.3
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcc-ee-ecccc---ccccc-CccCCcceEEEE-E--e--------------
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPY-IE-QVRTL---VNPVE-QAVRPVGMKIKT-L--K-------------- 548 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t-~~-~~~~~---~~p~~-~~~~T~Gi~i~~-~--~-------------- 548 (1363)
.++-+.|++|+|||+|+..+.......+... +. ++.+. ..-.. ...+..|++... - +
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 6888999999999999988877632222111 11 10000 00000 112222222220 0 0
Q ss_pred cCceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhcc-CC
Q 000665 549 DEDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQC-ML 627 (1363)
Q Consensus 549 ~~~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~-~~ 627 (1363)
.....+-+..-+| ---.+-.+.+ ...+.+.|.|.+..+.. | .-.+.. ..
T Consensus 94 ~~~~Dll~iEs~G--NL~~~~sp~L----~d~~~v~VidvteGe~~--P----------------------~K~gP~i~~ 143 (202)
T COG0378 94 FPDLDLLFIESVG--NLVCPFSPDL----GDHLRVVVIDVTEGEDI--P----------------------RKGGPGIFK 143 (202)
T ss_pred CCcCCEEEEecCc--ceecccCcch----hhceEEEEEECCCCCCC--c----------------------ccCCCceeE
Confidence 1225778888899 2223333333 35688888998752211 1 000000 01
Q ss_pred CeEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 628 PNVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 628 p~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.=++|.||.|+......+.+..++..++++- ..+++++|+++|.|++++.+.+..
T Consensus 144 -aDllVInK~DLa~~v~~dlevm~~da~~~np--------~~~ii~~n~ktg~G~~~~~~~i~~ 198 (202)
T COG0378 144 -ADLLVINKTDLAPYVGADLEVMARDAKEVNP--------EAPIIFTNLKTGEGLDEWLRFIEP 198 (202)
T ss_pred -eeEEEEehHHhHHHhCccHHHHHHHHHHhCC--------CCCEEEEeCCCCcCHHHHHHHHHh
Confidence 1388999999976554555544444443331 136789999999999998776654
No 359
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.86 E-value=0.0041 Score=65.79 Aligned_cols=66 Identities=12% Similarity=0.227 Sum_probs=40.4
Q ss_pred CceEEEEEecCCchhhhh----ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhcc
Q 000665 550 EDTRISIWNLAGQHEFYS----LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQC 625 (1363)
Q Consensus 550 ~~~~l~iWDfaGQe~y~~----th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~ 625 (1363)
....+.+.|+.|-..-.. +..-|+. ..+++|.|.+.... . . .....+|.......
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~---~~d~vi~V~~~~~~--------~-~-~~~~~~l~~~~~~~-------- 157 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLP---KADVVIFVVDANQD--------L-T-ESDMEFLKQMLDPD-------- 157 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHS---TTEEEEEEEETTST--------G-G-GHHHHHHHHHHTTT--------
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhc---cCCEEEEEeccCcc--------c-c-hHHHHHHHHHhcCC--------
Confidence 345689999999544333 2334456 89999999998741 1 1 13445666555432
Q ss_pred CCCeEEEEEecc
Q 000665 626 MLPNVTVVLTHY 637 (1363)
Q Consensus 626 ~~p~VilVgTh~ 637 (1363)
.+.+++|.||+
T Consensus 158 -~~~~i~V~nk~ 168 (168)
T PF00350_consen 158 -KSRTIFVLNKA 168 (168)
T ss_dssp -CSSEEEEEE-G
T ss_pred -CCeEEEEEcCC
Confidence 22489999985
No 360
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.80 E-value=0.014 Score=68.58 Aligned_cols=127 Identities=20% Similarity=0.303 Sum_probs=78.4
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEE----ecCceEEEEEecCCchhhhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL----KDEDTRISIWNLAGQHEFYSL 568 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~----~~~~~~l~iWDfaGQe~y~~t 568 (1363)
.+.++-.-.-|||||+..|.+. ++. +...+.+..-+-....-++..||.|-.- ..+..+++|.|+.||..|-.-
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQ-SGt-f~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQ-SGT-FREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhh-ccc-cccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 4566677788999999999865 110 0111111110000012346678877542 356789999999999999888
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
-.-.|+ --+..+|++|+.+.+ -|++ +|+-. +|...+-+ .|+|.||+|+...+.
T Consensus 85 VERvl~---MVDgvlLlVDA~EGp------MPQT---------rFVlk---KAl~~gL~--PIVVvNKiDrp~Arp 137 (603)
T COG1217 85 VERVLS---MVDGVLLLVDASEGP------MPQT---------RFVLK---KALALGLK--PIVVINKIDRPDARP 137 (603)
T ss_pred hhhhhh---hcceEEEEEEcccCC------CCch---------hhhHH---HHHHcCCC--cEEEEeCCCCCCCCH
Confidence 777777 677799999997532 1222 12222 23323333 488999999986553
No 361
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.74 E-value=0.00034 Score=69.41 Aligned_cols=107 Identities=16% Similarity=0.042 Sum_probs=59.6
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCH
Q 000665 291 SLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGR 370 (1363)
Q Consensus 291 ~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~ 370 (1363)
.+..++||+|+|.. +......+.....|+..+|++|.+.+.....- ..-+.++.|+|+ +|.|++
T Consensus 28 E~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk~fp~kft------------~kf~t~t~lNl~--~neisd 91 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFKKFPKKFT------------IKFPTATTLNLA--NNEISD 91 (177)
T ss_pred HhhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhhhCCHHHh------------hccchhhhhhcc--hhhhhh
Confidence 34556666666542 11122233455666666777776665443321 123456666666 566666
Q ss_pred HHHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhhCCCccEEEeecCC
Q 000665 371 DGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCK 424 (1363)
Q Consensus 371 ~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~~~~L~~L~Ls~N~ 424 (1363)
.+. .+..++.|+.|+++.| .+ ...++.+..+.+|-.|+..+|.
T Consensus 92 vPe-----E~Aam~aLr~lNl~~N-~l-----~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 92 VPE-----ELAAMPALRSLNLRFN-PL-----NAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred chH-----HHhhhHHhhhcccccC-cc-----ccchHHHHHHHhHHHhcCCCCc
Confidence 443 3445667778888887 43 3445555555666777776665
No 362
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.01 Score=67.60 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=75.1
Q ss_pred CceeEEecCccccchHHHHHHHhhc--CCCCCCcceeecccccccccCccCCcceEEEE--Ee-----------------
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN--FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT--LK----------------- 548 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~--~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~--~~----------------- 548 (1363)
-.+++.++|...+|||||+-.|.++ -++.....+.-+|..-. -+.-+|..|.-.. ++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HE--iqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHE--IQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhh--hccCcccccchhcccccccccccchhhcccHHHH
Confidence 3589999999999999999999876 22222222221211100 0112222221111 11
Q ss_pred -c-CceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccC
Q 000665 549 -D-EDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCM 626 (1363)
Q Consensus 549 -~-~~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~ 626 (1363)
+ ..--+.+.|.||+..|..|.-+=+++- .....+||+.+..... .+. ..-|..|.+.
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY-~Ph~A~LvVsA~~Gi~-------~tT----rEHLgl~~AL--------- 302 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGY-TPHFACLVVSADRGIT-------WTT----REHLGLIAAL--------- 302 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccC-CCceEEEEEEcCCCCc-------ccc----HHHHHHHHHh---------
Confidence 1 123467899999999999887777754 2445667776643111 111 2334555552
Q ss_pred CCeEEEEEeccCCCCC
Q 000665 627 LPNVTVVLTHYDKINQ 642 (1363)
Q Consensus 627 ~p~VilVgTh~D~~~~ 642 (1363)
.-|.+++.||.|++..
T Consensus 303 ~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 303 NIPFFVLVTKMDLVDR 318 (591)
T ss_pred CCCeEEEEEeeccccc
Confidence 2269999999999854
No 363
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0083 Score=73.74 Aligned_cols=162 Identities=15% Similarity=0.202 Sum_probs=89.8
Q ss_pred ceeEEecCccccchHHHHHHHhhc--CCCCCCcceeeccccccccc--CccCCcc----eEE------------------
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN--FSSSKLPYIEQVRTLVNPVE--QAVRPVG----MKI------------------ 544 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~--~~~~~~~t~~~~~~~~~p~~--~~~~T~G----i~i------------------ 544 (1363)
.+||++.|...+||||+++++... ......+++..+-.+-.... ...-|.| +++
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence 469999999999999999999876 33333444333222211110 0000111 111
Q ss_pred -----EEEecCce-----EEEEEecCC---chhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHH
Q 000665 545 -----KTLKDEDT-----RISIWNLAG---QHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWL 611 (1363)
Q Consensus 545 -----~~~~~~~~-----~l~iWDfaG---Qe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL 611 (1363)
.-|.++.. .+.+.|+.| .++.-+.-.-|.- ...|||+|.|+.+ +....-..++
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cl---daDVfVlV~NaEn-----------tlt~sek~Ff 254 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCL---DADVFVLVVNAEN-----------TLTLSEKQFF 254 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhh---cCCeEEEEecCcc-----------HhHHHHHHHH
Confidence 11222211 466789988 3334444444555 7999999999753 2222223334
Q ss_pred HHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCC
Q 000665 612 RFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDAR 677 (1363)
Q Consensus 612 ~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~ 677 (1363)
..+... +|.|+|+-||+|.....++..+.+...+.+|.- ....+..+.+|+||++
T Consensus 255 ~~vs~~---------KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v--~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 255 HKVSEE---------KPNIFILNNKWDASASEPECKEDVLKQIHELSV--VTEKEAADRVFFVSAK 309 (749)
T ss_pred HHhhcc---------CCcEEEEechhhhhcccHHHHHHHHHHHHhcCc--ccHhhhcCeeEEEecc
Confidence 433331 678999999999987665555544333332221 1223345678999944
No 364
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.012 Score=69.61 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=95.2
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcc----eEEEEEecCceEEEEEecCCchhhhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVG----MKIKTLKDEDTRISIWNLAGQHEFYSL 568 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~G----i~i~~~~~~~~~l~iWDfaGQe~y~~t 568 (1363)
-++..|.-.-|||||++++.+.-.. .. ++..-.| +.+..++.++..+.+.|..|++.|-.+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d-~l--------------~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTD-RL--------------PEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccc-cc--------------hhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHH
Confidence 3677888889999999999875221 11 1222334 333445556669999999999988765
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhH
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQ 648 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~ 648 (1363)
- +.+.+.-+..++|+|..+.. . .+...-|..+..- +.+..++|.||+|.++..
T Consensus 67 m---iag~~~~d~alLvV~~deGl------~-----~qtgEhL~iLdll--------gi~~giivltk~D~~d~~----- 119 (447)
T COG3276 67 L---LAGLGGIDYALLVVAADEGL------M-----AQTGEHLLILDLL--------GIKNGIIVLTKADRVDEA----- 119 (447)
T ss_pred H---HhhhcCCceEEEEEeCccCc------c-----hhhHHHHHHHHhc--------CCCceEEEEeccccccHH-----
Confidence 3 33333567788889875311 1 1122223333321 123579999999997432
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 649 LTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 649 ~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
++.+.++++.+... . . ..++|.+|++++.||++|+++|.+
T Consensus 120 r~e~~i~~Il~~l~-l-~-~~~i~~~s~~~g~GI~~Lk~~l~~ 159 (447)
T COG3276 120 RIEQKIKQILADLS-L-A-NAKIFKTSAKTGRGIEELKNELID 159 (447)
T ss_pred HHHHHHHHHHhhcc-c-c-cccccccccccCCCHHHHHHHHHH
Confidence 22233344433322 1 1 135688999999999999998875
No 365
>PLN03150 hypothetical protein; Provisional
Probab=96.64 E-value=0.0022 Score=82.32 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=71.9
Q ss_pred ccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHH
Q 000665 292 LKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRD 371 (1363)
Q Consensus 292 L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~ 371 (1363)
+..|+|++|.++. .++..+..+++|+.|+|++|.+++.-...+ ...++|+.|+|+ +|+++..
T Consensus 420 v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~------------~~l~~L~~LdLs--~N~lsg~ 481 (623)
T PLN03150 420 IDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSL------------GSITSLEVLDLS--YNSFNGS 481 (623)
T ss_pred EEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHH------------hCCCCCCEEECC--CCCCCCC
Confidence 6778888888762 355567778888888888888875444333 345778888887 5777643
Q ss_pred HHHHHHHccccCcceEEEEecCCCCCCHHHHHHHHHHHhh-CCCccEEEeecCC
Q 000665 372 GIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQK-NASLRQLSLQGCK 424 (1363)
Q Consensus 372 g~~~L~~~L~~~~~L~~L~Ls~N~~i~~~gl~~L~~~L~~-~~~L~~L~Ls~N~ 424 (1363)
+...+..+++|+.|+|++| .+.. .++..+.. ..++..+++++|.
T Consensus 482 ----iP~~l~~L~~L~~L~Ls~N-~l~g----~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 482 ----IPESLGQLTSLRILNLNGN-SLSG----RVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ----CchHHhcCCCCCEEECcCC-cccc----cCChHHhhccccCceEEecCCc
Confidence 2344566778888888888 4543 24444443 3456788888886
No 366
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=96.60 E-value=0.0075 Score=71.54 Aligned_cols=167 Identities=14% Similarity=0.179 Sum_probs=95.0
Q ss_pred CCCCCCCCceeEEecCccccchHHHHHHHhhcCC-CCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC
Q 000665 483 DMPLTEPKSCRVFFCGQEYAGKTTLCNSISQNFS-SSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG 561 (1363)
Q Consensus 483 ~ip~~~~~~~kl~~vG~~~~GKTSL~~~L~~~~~-~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG 561 (1363)
.+|+--+.+-.+++||-++|||||+++.+..... ...++ -.|.++=+..++.+-..+.+.|++|
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYa---------------FTTksL~vGH~dykYlrwQViDTPG 224 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYA---------------FTTKLLLVGHLDYKYLRWQVIDTPG 224 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcc---------------cccchhhhhhhhhheeeeeecCCcc
Confidence 3444445566899999999999999988876521 11111 1255555554545566788899999
Q ss_pred ch-----hhhhccccccc--cCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEE
Q 000665 562 QH-----EFYSLHDLMFP--GHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVL 634 (1363)
Q Consensus 562 Qe-----~y~~th~~Flt--~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVg 634 (1363)
-- .-..+-..-+| .| =++..|.+.|+++-.+ ++ +.+|+. -.+.|+..-.+ + |+|+|.
T Consensus 225 ILD~plEdrN~IEmqsITALAH-LraaVLYfmDLSe~CG----yS---va~Qvk-LfhsIKpLFaN------K-~~Ilvl 288 (620)
T KOG1490|consen 225 ILDRPEEDRNIIEMQIITALAH-LRSAVLYFMDLSEMCG----YS---VAAQVK-LYHSIKPLFAN------K-VTILVL 288 (620)
T ss_pred ccCcchhhhhHHHHHHHHHHHH-hhhhheeeeechhhhC----CC---HHHHHH-HHHHhHHHhcC------C-ceEEEe
Confidence 11 00000000011 23 2566777889985322 23 323332 33555543222 2 599999
Q ss_pred eccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHH
Q 000665 635 THYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTH 687 (1363)
Q Consensus 635 Th~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~ 687 (1363)
||+|.......+ ++-.+.++.+.+.- + -+|+..||-+..|+-+++.
T Consensus 289 NK~D~m~~edL~-~~~~~ll~~~~~~~-~-----v~v~~tS~~~eegVm~Vrt 334 (620)
T KOG1490|consen 289 NKIDAMRPEDLD-QKNQELLQTIIDDG-N-----VKVVQTSCVQEEGVMDVRT 334 (620)
T ss_pred ecccccCccccC-HHHHHHHHHHHhcc-C-----ceEEEecccchhceeeHHH
Confidence 999996432221 22224556555441 1 2578899999999877554
No 367
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=96.58 E-value=0.0057 Score=69.47 Aligned_cols=123 Identities=19% Similarity=0.278 Sum_probs=96.7
Q ss_pred hCCCccEEEEecC-CCCHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHH
Q 000665 72 AHTSLKHLEFHSV-EWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLL 150 (1363)
Q Consensus 72 ~~~~L~~L~Ls~~-~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L 150 (1363)
..+.++..++.++ .+..+.+..+.+++..++.++...|.+-+.++..+.+++.+++.|+.|++|++++|.|+..|+-++
T Consensus 196 nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~ 275 (353)
T KOG3735|consen 196 NDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMAL 275 (353)
T ss_pred CCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHH
Confidence 3467778888877 788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhccCCCccEEEccCC--CCChhhHHHHHHHHhcCCCeeEEEcc
Q 000665 151 ASALKVNDTLEELQIWED--SIGSKGAEELSKMIEANSTLKSLTIF 194 (1363)
Q Consensus 151 ~~~L~~~~sL~~L~Ls~N--~i~~~g~~~L~~~L~~~~~L~~L~Ls 194 (1363)
..++..+.+|..|...+- .++......++..+..|.+|-.+.+.
T Consensus 276 ~~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy~ 321 (353)
T KOG3735|consen 276 LRALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGYH 321 (353)
T ss_pred HHHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhcccccccccc
Confidence 888888888887766531 36666667777777777776555443
No 368
>PLN03150 hypothetical protein; Provisional
Probab=96.52 E-value=0.0024 Score=82.06 Aligned_cols=108 Identities=20% Similarity=0.187 Sum_probs=76.6
Q ss_pred cccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhh
Q 000665 263 TVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPL 342 (1363)
Q Consensus 263 ~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L 342 (1363)
.++.|+|++|.++.. +...+...++|+.|+|++|.+.. .++..+..+++|+.|+|++|+++......+
T Consensus 419 ~v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l---- 486 (623)
T PLN03150 419 FIDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESL---- 486 (623)
T ss_pred EEEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCCCchHH----
Confidence 478889999888653 33445667889999999998863 356667788899999999999887665555
Q ss_pred hhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCC
Q 000665 343 SRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQ 395 (1363)
Q Consensus 343 ~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 395 (1363)
...++|+.|+|+ +|.++..-...+...+ .++..+++.+|.
T Consensus 487 --------~~L~~L~~L~Ls--~N~l~g~iP~~l~~~~---~~~~~l~~~~N~ 526 (623)
T PLN03150 487 --------GQLTSLRILNLN--GNSLSGRVPAALGGRL---LHRASFNFTDNA 526 (623)
T ss_pred --------hcCCCCCEEECc--CCcccccCChHHhhcc---ccCceEEecCCc
Confidence 345788999998 5777654444455432 235677888884
No 369
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=96.51 E-value=0.06 Score=58.33 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=92.4
Q ss_pred ccCCCCCCCCchHHHHHHHhccCCCCCccccccCCCCCCCCceeEEecCccccchHHHHHHHhhc-CCC-CCCcceeecc
Q 000665 450 LERTPLKNSGKADGIYQRLGQKGRSEPDIDLLKDMPLTEPKSCRVFFCGQEYAGKTTLCNSISQN-FSS-SKLPYIEQVR 527 (1363)
Q Consensus 450 L~~N~l~~~g~~~~i~~~l~~~~~l~~~~~llk~ip~~~~~~~kl~~vG~~~~GKTSL~~~L~~~-~~~-~~~~t~~~~~ 527 (1363)
...|.++..| ++.|.+.+.... |. ..-.+.+|+||.+|.|||||++.|... ... +..++.
T Consensus 19 ~~~~~lgyvG-idtI~~Qm~~k~-----------mk--~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~---- 80 (336)
T KOG1547|consen 19 INSNLLGYVG-IDTIIEQMRKKT-----------MK--TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNS---- 80 (336)
T ss_pred ccCCcccccc-HHHHHHHHHHHH-----------Hh--ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcc----
Confidence 3445567777 777776655421 11 122368999999999999999999876 221 212211
Q ss_pred cccccccCccCCcceEEEEEe----cCceEEEEEecCC--------------------------chhhhhccccccccCC
Q 000665 528 TLVNPVEQAVRPVGMKIKTLK----DEDTRISIWNLAG--------------------------QHEFYSLHDLMFPGHG 577 (1363)
Q Consensus 528 ~~~~p~~~~~~T~Gi~i~~~~----~~~~~l~iWDfaG--------------------------Qe~y~~th~~Flt~~~ 577 (1363)
..+...|..+++.+.. +-..++++.|+.| |++-....+-+++
T Consensus 81 -----~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~krip--- 152 (336)
T KOG1547|consen 81 -----AEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIP--- 152 (336)
T ss_pred -----cCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCC---
Confidence 1123345555555443 3467889999999 4444555666777
Q ss_pred CCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHHHHHHH
Q 000665 578 SASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRL 657 (1363)
Q Consensus 578 ~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~~l 657 (1363)
...+...+|=+.-.. .+..-.+-+...-|..+. .|+-|.-|+|...- ++-.+..+++
T Consensus 153 DTRVHcclyFi~ptG-----hsLrplDieflkrLt~vv-------------NvvPVIakaDtlTl-----eEr~~FkqrI 209 (336)
T KOG1547|consen 153 DTRVHCCLYFIPPTG-----HSLRPLDIEFLKRLTEVV-------------NVVPVIAKADTLTL-----EERSAFKQRI 209 (336)
T ss_pred CceEEEEEEEeCCCC-----CccCcccHHHHHHHhhhh-------------eeeeeEeecccccH-----HHHHHHHHHH
Confidence 556666555443100 011111111112222221 38888899998532 2223556777
Q ss_pred HHHhccc
Q 000665 658 KDKFQGF 664 (1363)
Q Consensus 658 r~~f~~~ 664 (1363)
++.|..+
T Consensus 210 ~~el~~~ 216 (336)
T KOG1547|consen 210 RKELEKH 216 (336)
T ss_pred HHHHHhc
Confidence 7776543
No 370
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=96.43 E-value=0.023 Score=65.46 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=36.8
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe----cCceEEEEEecCC
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK----DEDTRISIWNLAG 561 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~----~~~~~l~iWDfaG 561 (1363)
.+++|++|..|+||||++++|.+....... .....|.....+|..+...... +..+.+.|+||.|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISED------SSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccc------ccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence 479999999999999999999976211100 0011111122334444443322 3467899999999
No 371
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.41 E-value=0.047 Score=62.14 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=34.9
Q ss_pred eEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 629 NVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 629 ~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
|-+.|.||+|..+ . + ....+.+.+ ..+++||..+-|+++|++.|-+..
T Consensus 241 p~l~v~NKiD~~~-~-e-------~~~~l~~~~--------~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 241 PALYVVNKIDLPG-L-E-------ELERLARKP--------NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred eeEEEEecccccC-H-H-------HHHHHHhcc--------ceEEEecccCCCHHHHHHHHHHhh
Confidence 6799999999974 1 1 134444443 347899999999999998886643
No 372
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.39 E-value=0.00091 Score=66.52 Aligned_cols=77 Identities=14% Similarity=0.093 Sum_probs=40.0
Q ss_pred hHHHHHHHhcCC-CcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCC
Q 000665 250 GSCRVACSLGCN-TTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGN 328 (1363)
Q Consensus 250 g~~~L~~~L~~~-~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N 328 (1363)
+++.++..+... ++++.|+|++|+|++.... +...+.|+.|+++.|.|.. .++.+..+.+|-.|+..+|
T Consensus 64 ~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-----~Aam~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 64 GFKKFPKKFTIKFPTATTLNLANNEISDVPEE-----LAAMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hhhhCCHHHhhccchhhhhhcchhhhhhchHH-----HhhhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCC
Confidence 444444444332 3566666666666653322 2333566666666666653 2223333455566666666
Q ss_pred CCCHhhHH
Q 000665 329 WFSGVGVE 336 (1363)
Q Consensus 329 ~l~~~g~~ 336 (1363)
.+-.....
T Consensus 134 a~~eid~d 141 (177)
T KOG4579|consen 134 ARAEIDVD 141 (177)
T ss_pred ccccCcHH
Confidence 65554444
No 373
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=96.38 E-value=0.0044 Score=70.38 Aligned_cols=120 Identities=26% Similarity=0.358 Sum_probs=94.9
Q ss_pred CCcccEEEccCC-CCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHH
Q 000665 261 NTTVKSLDMTGV-RLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLL 339 (1363)
Q Consensus 261 ~~~L~~LdLs~N-~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~ 339 (1363)
-+.|+.++|+++ .|...-...++.+++.++..+...|.+.+.++....+++..+..|.+|++|++++|.|++.|+-.+.
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 378999999988 6888889999999999999999999999999988889999999999999999999999999999998
Q ss_pred hhhhhcccccccCCCceeEEEeeCCCCCC---CHHHHHHHHHccccCcceEEEEe
Q 000665 340 CPLSRFSSLQSQANITLRSVTFGGGRTKI---GRDGIAAILQMLTTNETVTQLGI 391 (1363)
Q Consensus 340 ~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i---~~~g~~~L~~~L~~~~~L~~L~L 391 (1363)
.+| +.+.+|..|.+ +|+. +..-...++..+..|.+|-.+.+
T Consensus 277 ~al--------~~n~tl~el~~---dnqrq~lg~~vemeia~~leen~sllk~gy 320 (353)
T KOG3735|consen 277 RAL--------QSNKSLTELKN---DNQRQVLGNAVEMEIALELEENASLLKFGY 320 (353)
T ss_pred HHH--------hccchhhHhhh---hhHHhhcccHHHHHHHHHHHhccccccccc
Confidence 888 57788888766 3432 23333334444555555544433
No 374
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.33 E-value=0.029 Score=65.50 Aligned_cols=97 Identities=13% Similarity=0.135 Sum_probs=62.6
Q ss_pred cCCcceEEEEEecCceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHh
Q 000665 537 VRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVS 616 (1363)
Q Consensus 537 ~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~ 616 (1363)
..|.||.-..+.-++..|.++|.|||..=+.=|-+++. .....+.|.++++-...-+ +++...++..=+..-.+
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe---~v~aviF~vslSeYdq~l~---ED~~~NRM~eS~~LF~s 253 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFE---DVTAVIFCVSLSEYDQVLE---EDETTNRMHESLKLFES 253 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhc---CCCEEEEEEehhhhhhhcc---cccchhHHHHHHHHHHH
Confidence 57899998888888999999999999988877777778 6777788888875221111 11222344443333222
Q ss_pred hchhhhhccCCCeEEEEEeccCCCC
Q 000665 617 NSRRAVQQCMLPNVTVVLTHYDKIN 641 (1363)
Q Consensus 617 ~~~~av~~~~~p~VilVgTh~D~~~ 641 (1363)
-..+.. . ...++||..||.|+..
T Consensus 254 I~n~~~-F-~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 254 ICNNKW-F-ANTSIILFLNKKDLFE 276 (354)
T ss_pred HhcCcc-c-ccCcEEEEeecHHHHH
Confidence 111110 0 1236999999999964
No 375
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.31 E-value=0.00039 Score=60.53 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=28.1
Q ss_pred cccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCC
Q 000665 263 TVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWF 330 (1363)
Q Consensus 263 ~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l 330 (1363)
+|+.|+|++|+|+..... .+...++|+.|+|++|.|+.... .++..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~----~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPP----DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEET----TTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCH----HHHcCCCCCCEEeCcCCcC
Confidence 455566666655442211 22233555555555555543211 1234455555555555543
No 376
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.24 E-value=0.0064 Score=62.62 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.8
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
+++++|.+|+|||||+++|.+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999875
No 377
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.019 Score=70.68 Aligned_cols=176 Identities=13% Similarity=0.158 Sum_probs=97.2
Q ss_pred eEEecCccccchHHHHHHHhhc--CCCCCCcceeeccccccccc-CccCCcceEEEE-EecCceEEEEEecCCchhhhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN--FSSSKLPYIEQVRTLVNPVE-QAVRPVGMKIKT-LKDEDTRISIWNLAGQHEFYSL 568 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~--~~~~~~~t~~~~~~~~~p~~-~~~~T~Gi~i~~-~~~~~~~l~iWDfaGQe~y~~t 568 (1363)
-+.++|.-..|||-|+..+.+. ..+..-..+.++..-..|.. -..+|.-+.-.. -.-+..-+.+.|+.||+.|-..
T Consensus 477 IcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl 556 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL 556 (1064)
T ss_pred eEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh
Confidence 4678999999999999999875 22211111111111111111 000110000000 0012345789999999999999
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch---
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ--- 645 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~--- 645 (1363)
...+.+ -..+.|+|+|+... - .++++ .-++.++.| ..|.||..||+|..-....
T Consensus 557 Rsrgss---lC~~aIlvvdImhG---l---epqti-----ESi~lLR~r---------ktpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144|consen 557 RSRGSS---LCDLAILVVDIMHG---L---EPQTI-----ESINLLRMR---------KTPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred hhcccc---ccceEEEEeehhcc---C---Ccchh-----HHHHHHHhc---------CCCeEEeehhhhhhcccccCCC
Confidence 998887 78999999999852 1 22222 223445443 2269999999998633211
Q ss_pred -hh-----HHHHHHHHHHHHH-------hccc----------cCC--CCcEEEEcCCCCCChhHHHHHHHH
Q 000665 646 -DM-----QLTVSSIQRLKDK-------FQGF----------VDF--YPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 646 -~~-----~~~~~~~~~lr~~-------f~~~----------~~i--~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.. ++-...+.+.+.+ |... -+. +-.++++|+-+|.||..|.-.|..
T Consensus 614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ 684 (1064)
T KOG1144|consen 614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQ 684 (1064)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHH
Confidence 10 0111111222222 2110 111 124677899999999998877765
No 378
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.14 E-value=0.0046 Score=50.02 Aligned_cols=37 Identities=32% Similarity=0.353 Sum_probs=21.5
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCH
Q 000665 291 SLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSG 332 (1363)
Q Consensus 291 ~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~ 332 (1363)
+|++|+|++|+|++ ++..+.++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 46666666666664 33335666666666666666664
No 379
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.03 E-value=0.045 Score=61.10 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=81.9
Q ss_pred CceeEEecCccccchHHHHHHHhhcCC--CCCCcceeeccccccccc------------CccCCcceEEEEEe-------
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFS--SSKLPYIEQVRTLVNPVE------------QAVRPVGMKIKTLK------- 548 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~--~~~~~t~~~~~~~~~p~~------------~~~~T~Gi~i~~~~------- 548 (1363)
....+=+-|++|||||||+..|...+. +.+...+....+ .|.. ......|+=|....
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS--Sp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPS--SPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG--GGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCC--CCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 346788999999999999999986632 111111100000 0000 01223455555543
Q ss_pred -------------cCceEEEEEecC--CchhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHH
Q 000665 549 -------------DEDTRISIWNLA--GQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRF 613 (1363)
Q Consensus 549 -------------~~~~~l~iWDfa--GQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~ 613 (1363)
.-.+.+.|..|- ||.+.-...- .+.+++|.-..- .++.+-.+..+..+
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~--------aD~~v~v~~Pg~------GD~iQ~~KaGimEi--- 168 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADM--------ADTVVLVLVPGL------GDEIQAIKAGIMEI--- 168 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTT--------SSEEEEEEESST------CCCCCTB-TTHHHH---
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHh--------cCeEEEEecCCC------ccHHHHHhhhhhhh---
Confidence 134567778884 5988776432 233444443321 01222221111111
Q ss_pred HHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHHHHHHHHHHh----ccccCCCCcEEEEcCCCCCChhHHHHHH
Q 000665 614 IVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKF----QGFVDFYPTVFTIDARSSASVTKLTHHI 689 (1363)
Q Consensus 614 I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f----~~~~~i~~~v~~vs~~~~~~i~~L~~~L 689 (1363)
.=|+|.||+|.. ..+.. ..+++..+ ...-.+.++|+.+|+.++.|+++|.+.|
T Consensus 169 ---------------aDi~vVNKaD~~-----gA~~~---~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i 225 (266)
T PF03308_consen 169 ---------------ADIFVVNKADRP-----GADRT---VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAI 225 (266)
T ss_dssp ----------------SEEEEE--SHH-----HHHHH---HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHH
T ss_pred ---------------ccEEEEeCCChH-----HHHHH---HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHH
Confidence 028899999952 21211 22222211 1123456789999999999999999999
Q ss_pred HHHHHHH
Q 000665 690 RKTSRTI 696 (1363)
Q Consensus 690 ~~~~~~i 696 (1363)
.+....+
T Consensus 226 ~~~~~~l 232 (266)
T PF03308_consen 226 DEHRDYL 232 (266)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8755544
No 380
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=95.96 E-value=0.01 Score=62.15 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=21.1
Q ss_pred eeEEecCccccchHHHHHHHhhc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
.+++++|.+++|||||++++.+.
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~ 124 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGR 124 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999865
No 381
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.09 Score=58.79 Aligned_cols=147 Identities=17% Similarity=0.266 Sum_probs=90.2
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe----cCceEEEEEecCCchhh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK----DEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~----~~~~~l~iWDfaGQe~y 565 (1363)
+.+++-.+|.-.-|||||..++.................+.+ .++++..||.|.+-+ ..+-.+.-.|+.||..|
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~--aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDN--APEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhcc--CchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 467999999999999999999986633211100000011110 245677888877643 45677888999999999
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
-. -++++..+.+..|||+.+++.+ -+++.+.. +-++ +.+-|.|+++.||+|.++++ +
T Consensus 89 vK---NMItgAaqmDgAILVVsA~dGp------mPqTrEHi-------Llar------qvGvp~ivvflnK~Dmvdd~-e 145 (394)
T COG0050 89 VK---NMITGAAQMDGAILVVAATDGP------MPQTREHI-------LLAR------QVGVPYIVVFLNKVDMVDDE-E 145 (394)
T ss_pred HH---HHhhhHHhcCccEEEEEcCCCC------CCcchhhh-------hhhh------hcCCcEEEEEEecccccCcH-H
Confidence 64 4677555667789999988632 23333111 1111 23457799999999998633 2
Q ss_pred hhHHHHHHHHHHHHHh
Q 000665 646 DMQLTVSSIQRLKDKF 661 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f 661 (1363)
..+....-..+|-+.|
T Consensus 146 llelVemEvreLLs~y 161 (394)
T COG0050 146 LLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 2332222344555555
No 382
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.94 E-value=0.029 Score=60.86 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=58.6
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
+..+.+.++. ..++.++|+|+++.. ..|...+.... ...|+++|+||+|+....
T Consensus 24 ~~~~l~~~~~---~ad~il~VvD~~~~~---------------~~~~~~l~~~~-------~~~~~ilV~NK~Dl~~~~- 77 (190)
T cd01855 24 ILNLLSSISP---KKALVVHVVDIFDFP---------------GSLIPRLRLFG-------GNNPVILVGNKIDLLPKD- 77 (190)
T ss_pred HHHHHHhccc---CCcEEEEEEECccCC---------------CccchhHHHhc-------CCCcEEEEEEchhcCCCC-
Confidence 6777888888 788999999997521 11222221111 123699999999996432
Q ss_pred hhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 645 QDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
...+......+.+..+.... ....+|.+|++++.|+++|++.|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--~~~~i~~vSA~~~~gi~eL~~~l~~~ 123 (190)
T cd01855 78 KNLVRIKNWLRAKAAAGLGL--KPKDVILISAKKGWGVEELINAIKKL 123 (190)
T ss_pred CCHHHHHHHHHHHHHhhcCC--CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 11111111111111011111 11357899999999999999888764
No 383
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.88 E-value=0.0023 Score=55.62 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=7.2
Q ss_pred cCCCCCEEEccCCCCC
Q 000665 316 KNRSLESLYLHGNWFS 331 (1363)
Q Consensus 316 ~~~~L~~LdLs~N~l~ 331 (1363)
.+++|++|++++|.|+
T Consensus 23 ~l~~L~~L~l~~N~l~ 38 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLT 38 (61)
T ss_dssp TGTTESEEEETSSSES
T ss_pred CCCCCCEeEccCCccC
Confidence 3444444444444444
No 384
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.0027 Score=69.97 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=55.8
Q ss_pred CccEEEEecCCCCHHHHHHHHHHhhcCCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHh
Q 000665 75 SLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASAL 154 (1363)
Q Consensus 75 ~L~~L~Ls~~~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L 154 (1363)
.++.|++.++.++|..+ ..+.+.|+.|.||-|.|+... -+..|++|++|.|..|.|.+ +..| ..|
T Consensus 20 ~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~s--ldEL-~YL 84 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIES--LDEL-EYL 84 (388)
T ss_pred HhhhhcccCCCccHHHH------HHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhccccc--HHHH-HHH
Confidence 44566677776666544 345566677777777665421 13456667777777776653 1122 245
Q ss_pred ccCCCccEEEccCCCCChh-hHHHHHHHHhcCCCeeEEE
Q 000665 155 KVNDTLEELQIWEDSIGSK-GAEELSKMIEANSTLKSLT 192 (1363)
Q Consensus 155 ~~~~sL~~L~Ls~N~i~~~-g~~~L~~~L~~~~~L~~L~ 192 (1363)
...++|+.|.|..|..... |-..=...|...++|++||
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 5556666666666654322 2233333444455555553
No 385
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.82 E-value=0.027 Score=67.44 Aligned_cols=101 Identities=12% Similarity=0.168 Sum_probs=63.9
Q ss_pred chhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCC
Q 000665 562 QHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKIN 641 (1363)
Q Consensus 562 Qe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~ 641 (1363)
++.|..+-..+.. .+++.++|+|+.+.+ ..|...+..... ..|+++|+||+|+..
T Consensus 50 ~e~f~~~l~~~~~---~~~~Il~VvD~~d~~---------------~s~~~~l~~~~~-------~~piilV~NK~DLl~ 104 (360)
T TIGR03597 50 DDDFLNLLNSLGD---SNALIVYVVDIFDFE---------------GSLIPELKRFVG-------GNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHHhhccc---CCcEEEEEEECcCCC---------------CCccHHHHHHhC-------CCCEEEEEEchhhCC
Confidence 5677777777777 788999999997521 235555544221 226999999999964
Q ss_pred CCchhhHHHHHHHHHHHHHhccccCC-CCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 642 QPSQDMQLTVSSIQRLKDKFQGFVDF-YPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 642 ~~~~~~~~~~~~~~~lr~~f~~~~~i-~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
. ....+++.+.+++..+.+ .+ ...++.+|++++.|++++++.|.+.
T Consensus 105 k-~~~~~~~~~~l~~~~k~~----g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 105 K-SVNLSKIKEWMKKRAKEL----GLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred C-CCCHHHHHHHHHHHHHHc----CCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2 222222222222222222 12 1357889999999999999988653
No 386
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.0045 Score=68.32 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=78.4
Q ss_pred CCCccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCCCCHHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHH
Q 000665 101 SSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSK 180 (1363)
Q Consensus 101 ~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~ 180 (1363)
+.++++|++.++.++|..+ ....+.|+.|.||-|.|+. ...+..|+.|++|.|..|.|.+.. .|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvNkIss------L~pl~rCtrLkElYLRkN~I~sld--EL~- 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVNKISS------LAPLQRCTRLKELYLRKNCIESLD--ELE- 82 (388)
T ss_pred HHHhhhhcccCCCccHHHH------HHhcccceeEEeecccccc------chhHHHHHHHHHHHHHhcccccHH--HHH-
Confidence 4677899999999988643 2356789999999999974 234567888999999999998733 332
Q ss_pred HHhcCCCeeEEEccCCCC--CChHHHHHHHHHhCCCceEEE
Q 000665 181 MIEANSTLKSLTIFDSSS--LTATPLISAVLARNRAMEVHV 219 (1363)
Q Consensus 181 ~L~~~~~L~~L~Ls~n~~--~~~~~~l~~~l~~~~~L~~L~ 219 (1363)
.|.+.++|+.|.|..|.. ..+...=...+..+++|++||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 567788999999998864 345566666777777777774
No 387
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.64 E-value=0.011 Score=47.92 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=29.4
Q ss_pred CcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCCh
Q 000665 262 TTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKD 304 (1363)
Q Consensus 262 ~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d 304 (1363)
++|++|+|++|+|++ +...+..+++|+.|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 478999999999987 33347788999999999999885
No 388
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.62 E-value=0.004 Score=82.11 Aligned_cols=134 Identities=20% Similarity=0.184 Sum_probs=90.6
Q ss_pred CCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCchhHHHHHHHhcCCCcc
Q 000665 185 NSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTTV 264 (1363)
Q Consensus 185 ~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g~~~L~~~L~~~~~L 264 (1363)
++.|++|-+..|.. .-.......+...+.|..||||+|. ...++++.+..+-+||+|+++..++..++..+..+..|
T Consensus 544 ~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~--~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNS--SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCC--ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 45688887777641 0011123346778889999999873 23456777788889999999999999999999999999
Q ss_pred cEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccC
Q 000665 265 KSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHG 327 (1363)
Q Consensus 265 ~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~ 327 (1363)
.+||+..+.--.. ++..+...++|+.|.|-....... ..+...+..+.+|+.|....
T Consensus 621 ~~Lnl~~~~~l~~----~~~i~~~L~~Lr~L~l~~s~~~~~--~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 621 IYLNLEVTGRLES----IPGILLELQSLRVLRLPRSALSND--KLLLKELENLEHLENLSITI 677 (889)
T ss_pred heecccccccccc----ccchhhhcccccEEEeeccccccc--hhhHHhhhcccchhhheeec
Confidence 9999998753221 133445568899998866542211 12333456677777776643
No 389
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.56 E-value=0.085 Score=64.24 Aligned_cols=157 Identities=14% Similarity=0.152 Sum_probs=84.8
Q ss_pred CCceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhh
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~ 567 (1363)
..-.+.+++|..++|||.+++++.+. +......+.. .-.-++.....+....+.+-|.+-+ .+..
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~-------------~~~avn~v~~~g~~k~LiL~ei~~~-~~~~ 488 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTK-------------PRYAVNSVEVKGQQKYLILREIGED-DQDF 488 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCC-------------CceeeeeeeeccccceEEEeecCcc-cccc
Confidence 34568899999999999999999986 4332211110 1122333333456667777777654 2221
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchh-
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQD- 646 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~- 646 (1363)
.-.-= + ..++..+|||.++ +.+++- +..+...... . ..-|+++|++|+|+-..+++-
T Consensus 489 l~~ke-~---~cDv~~~~YDsS~------p~sf~~--------~a~v~~~~~~---~-~~~Pc~~va~K~dlDe~~Q~~~ 546 (625)
T KOG1707|consen 489 LTSKE-A---ACDVACLVYDSSN------PRSFEY--------LAEVYNKYFD---L-YKIPCLMVATKADLDEVPQRYS 546 (625)
T ss_pred ccCcc-c---eeeeEEEecccCC------chHHHH--------HHHHHHHhhh---c-cCCceEEEeeccccchhhhccC
Confidence 11111 3 5788999999874 222211 1222221110 1 123699999999995433211
Q ss_pred hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 647 MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 647 ~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
.+ ..+...++ .+.++ ..+|++...+ ..++.+|..+
T Consensus 547 iq-----pde~~~~~----~i~~P-~~~S~~~~~s-~~lf~kL~~~ 581 (625)
T KOG1707|consen 547 IQ-----PDEFCRQL----GLPPP-IHISSKTLSS-NELFIKLATM 581 (625)
T ss_pred CC-----hHHHHHhc----CCCCC-eeeccCCCCC-chHHHHHHHh
Confidence 11 12233332 23333 4577775334 7888877653
No 390
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.46 E-value=0.23 Score=56.36 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=40.9
Q ss_pred EEEEeccCCCCCCchh-hHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHHHHH
Q 000665 631 TVVLTHYDKINQPSQD-MQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRTIL 697 (1363)
Q Consensus 631 ilVgTh~D~~~~~~~~-~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~i~ 697 (1363)
|+|.||+|... .+. ..+....++.++. ......+.++++.+++.++.|+++|.++|.+..+.+.
T Consensus 193 i~vINKaD~~~--A~~a~r~l~~al~~~~~-~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 193 IIVINKADRKG--AEKAARELRSALDLLRE-VWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred eeeEeccChhh--HHHHHHHHHHHHHhhcc-cccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 88999999521 111 1111122222221 1344567789999999999999999999988655543
No 391
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.11 Score=56.35 Aligned_cols=81 Identities=14% Similarity=0.427 Sum_probs=50.1
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhhhcc-c-
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH-D- 570 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th-~- 570 (1363)
++++.|...+||||+.+...+..+....-+. ++|..+....+...-+.|.+|||.||-.|..-- .
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPneTlfl-------------ESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~ 95 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNETLFL-------------ESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDY 95 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCceeEe-------------eccCcccHhhhhhhhcceEEeecCCccccCCCccCH
Confidence 4899999999999999888765322111111 234444333333456789999999998765421 1
Q ss_pred -cccccCCCCeEEEEEEeCC
Q 000665 571 -LMFPGHGSASCFLIISSLF 589 (1363)
Q Consensus 571 -~Flt~~~~~alyLLV~dl~ 589 (1363)
..++ +....+.|.|+.
T Consensus 96 e~iF~---~~gALifvIDaQ 112 (347)
T KOG3887|consen 96 EMIFR---GVGALIFVIDAQ 112 (347)
T ss_pred HHHHh---ccCeEEEEEech
Confidence 1233 345566777865
No 392
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.56 Score=54.14 Aligned_cols=124 Identities=15% Similarity=0.264 Sum_probs=72.1
Q ss_pred eEEecCccccchHHHHHHHhhc-CCCCC---Ccceeeccccc-ccccCccCCcceEEE-----EEe--------------
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN-FSSSK---LPYIEQVRTLV-NPVEQAVRPVGMKIK-----TLK-------------- 548 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~-~~~~~---~~t~~~~~~~~-~p~~~~~~T~Gi~i~-----~~~-------------- 548 (1363)
=++++|+-..||||+++-|... +.+.. .||...+--++ ++++ ....|-... ++.
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e--~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEE--GSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcc--cccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 4889999999999999999977 54321 22222111110 1111 112221111 010
Q ss_pred ----c--CceEEEEEecCC------c-----hhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHH
Q 000665 549 ----D--EDTRISIWNLAG------Q-----HEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWL 611 (1363)
Q Consensus 549 ----~--~~~~l~iWDfaG------Q-----e~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL 611 (1363)
. ---.++|.|+.| | -.|-...+-|.. ..+..+|+||... .. -.+|+ ..-+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFae---R~D~IiLlfD~hK-LD-----IsdEf----~~vi 204 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAE---RVDRIILLFDAHK-LD-----ISDEF----KRVI 204 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHH---hccEEEEEechhh-cc-----ccHHH----HHHH
Confidence 0 012578888888 3 125566678888 8999999999863 11 11333 3335
Q ss_pred HHHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 612 RFIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 612 ~~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
..++.+-. .+-||.||+|.+
T Consensus 205 ~aLkG~Ed---------kiRVVLNKADqV 224 (532)
T KOG1954|consen 205 DALKGHED---------KIRVVLNKADQV 224 (532)
T ss_pred HHhhCCcc---------eeEEEecccccc
Confidence 55555433 388999999997
No 393
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.037 Score=67.45 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=60.2
Q ss_pred CCceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEE--E-------ecCceEEEEEe
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKT--L-------KDEDTRISIWN 558 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~--~-------~~~~~~l~iWD 558 (1363)
..-..+.++|.-..|||+|+..|... -.....++-...+...+- ..+...|..|+. . +++..-+++.|
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l--~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTL--FYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccc--hhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 34457889999999999999999865 111111110001111111 112233433332 2 25678899999
Q ss_pred cCCchhhhhccccccccCCCCeEEEEEEeCCC
Q 000665 559 LAGQHEFYSLHDLMFPGHGSASCFLIISSLFR 590 (1363)
Q Consensus 559 faGQe~y~~th~~Flt~~~~~alyLLV~dl~~ 590 (1363)
+.||-.|-.---.-++ -.++.+||+|+.+
T Consensus 204 TPGHVnF~DE~ta~l~---~sDgvVlvvDv~E 232 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLR---LSDGVVLVVDVAE 232 (971)
T ss_pred CCCcccchHHHHHHhh---hcceEEEEEEccc
Confidence 9999988765555566 6788999999975
No 394
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.19 E-value=0.026 Score=40.94 Aligned_cols=22 Identities=32% Similarity=0.293 Sum_probs=8.9
Q ss_pred CCCEEEccCCCCCHhhHHHHHh
Q 000665 319 SLESLYLHGNWFSGVGVEHLLC 340 (1363)
Q Consensus 319 ~L~~LdLs~N~l~~~g~~~L~~ 340 (1363)
+|++|||++|.|++.|+..|++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHH
Confidence 3344444444444444444433
No 395
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.19 E-value=0.029 Score=59.89 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=22.2
Q ss_pred ceeEEecCccccchHHHHHHHhhc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
.++++++|.+++|||||+++|.+.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~ 140 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRS 140 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 478999999999999999999975
No 396
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.13 E-value=0.03 Score=58.73 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.6
Q ss_pred ceeEEecCccccchHHHHHHHhhc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
...++++|.+|||||||+++|.+.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC
Confidence 467889999999999999999865
No 397
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.05 E-value=0.072 Score=64.69 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=93.0
Q ss_pred cCCcceEEEEEec-CceEEEEEecCCchhhhhccccccccCCCCeEEEEEEeCCCCCCC-CCCCChhhHHHHHHHHHHHH
Q 000665 537 VRPVGMKIKTLKD-EDTRISIWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTN-REPKTPEEIEEDLRYWLRFI 614 (1363)
Q Consensus 537 ~~T~Gi~i~~~~~-~~~~l~iWDfaGQe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~-~~~~~~~~~~~~l~~WL~~I 614 (1363)
.+|.||.-..+.- +...+.++|.|||..-+.-|-.|+. .....|.|+++++-... .|........+.+..|=..+
T Consensus 220 ~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~---~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~ 296 (389)
T PF00503_consen 220 VKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFE---DVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESIC 296 (389)
T ss_dssp ---SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGT---TESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHH
T ss_pred CCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhc---cccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHH
Confidence 3589999888877 9999999999999999999988888 67778888888642111 11112234556666665555
Q ss_pred HhhchhhhhccCCCeEEEEEeccCCCCC----Cc------h---hh--HHHHHHHHHHHHHhccccCCC---C--cEEEE
Q 000665 615 VSNSRRAVQQCMLPNVTVVLTHYDKINQ----PS------Q---DM--QLTVSSIQRLKDKFQGFVDFY---P--TVFTI 674 (1363)
Q Consensus 615 ~~~~~~av~~~~~p~VilVgTh~D~~~~----~~------~---~~--~~~~~~~~~lr~~f~~~~~i~---~--~v~~v 674 (1363)
.... -...|+||+.||.|.... .. . .. .......+.++.+|.....-. . .++.+
T Consensus 297 ~~~~------~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t 370 (389)
T PF00503_consen 297 NNPW------FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFT 370 (389)
T ss_dssp TSGG------GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEE
T ss_pred hCcc------cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEe
Confidence 4421 113479999999997521 11 0 11 234566777888887653332 1 24466
Q ss_pred cCCCCCChhHHHHHHHHH
Q 000665 675 DARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 675 s~~~~~~i~~L~~~L~~~ 692 (1363)
+|.+...+..+++.+.+.
T Consensus 371 ~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 371 CATDTENIRKVFNAVKDI 388 (389)
T ss_dssp STTSHHHHHHHHHHHHHH
T ss_pred eecccHHHHHHHHHhcCc
Confidence 777777777777666553
No 398
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=94.99 E-value=0.037 Score=58.97 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.9
Q ss_pred ceeEEecCccccchHHHHHHHhhc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
..+++++|.+++|||||+++|.+.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999975
No 399
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.80 E-value=0.035 Score=40.21 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=17.6
Q ss_pred CCccEEEccCCCCChhhHHHHHHHHh
Q 000665 158 DTLEELQIWEDSIGSKGAEELSKMIE 183 (1363)
Q Consensus 158 ~sL~~L~Ls~N~i~~~g~~~L~~~L~ 183 (1363)
++|+.|+|++|.|++.|+..++++|.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 45677777777777777777766653
No 400
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=94.65 E-value=0.1 Score=59.77 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=58.2
Q ss_pred EecCccccchHHHHHHHhhcCC-CCCCcceeecccccccccCccCCcceEEEEEec---------------CceEEEEEe
Q 000665 495 FFCGQEYAGKTTLCNSISQNFS-SSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKD---------------EDTRISIWN 558 (1363)
Q Consensus 495 ~~vG~~~~GKTSL~~~L~~~~~-~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~---------------~~~~l~iWD 558 (1363)
.++|.++||||||.++|.+... ...+|.... ....|+- .+.+ ....+.+.|
T Consensus 2 givG~PN~GKSTLfn~Lt~~~~~~~n~pftTi-----------~p~~g~v--~v~d~r~~~l~~~~~~~k~~~~~i~lvD 68 (274)
T cd01900 2 GIVGLPNVGKSTLFNALTKAGAEAANYPFCTI-----------EPNVGIV--PVPDERLDKLAEIVKPKKIVPATIEFVD 68 (274)
T ss_pred eEeCCCCCcHHHHHHHHhCCCCccccccccch-----------hceeeeE--EeccchhhhHHHHhCCceeeeeEEEEEE
Confidence 5799999999999999997621 111121110 0011111 1111 123689999
Q ss_pred cCCchhhhhcc------ccccccCCCCeEEEEEEeCCCCCCCCCC-------CChhhHHHHHHHH-HHHHHhh
Q 000665 559 LAGQHEFYSLH------DLMFPGHGSASCFLIISSLFRKPTNREP-------KTPEEIEEDLRYW-LRFIVSN 617 (1363)
Q Consensus 559 faGQe~y~~th------~~Flt~~~~~alyLLV~dl~~~~~~~~~-------~~~~~~~~~l~~W-L~~I~~~ 617 (1363)
++|-. ...| .-|+.......+.+.|+|..++.....+ .+.+.+...+..| +..+..+
T Consensus 69 ~pGl~--~~a~~~~glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~ 139 (274)
T cd01900 69 IAGLV--KGASKGEGLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKR 139 (274)
T ss_pred CCCcC--CCCchhhHHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99932 1222 2355532268889999988754322111 1224445667777 5555554
No 401
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=94.55 E-value=0.15 Score=65.59 Aligned_cols=141 Identities=15% Similarity=0.157 Sum_probs=85.0
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccc--cccCccCCcceEEEEE----ecC-ceEEEEEecCCchh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVN--PVEQAVRPVGMKIKTL----KDE-DTRISIWNLAGQHE 564 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~--p~~~~~~T~Gi~i~~~----~~~-~~~l~iWDfaGQe~ 564 (1363)
-.+-+++.-.+|||||..+|...-.. ...++.++.-.+ ...+.++..||.|+.- ..+ ...+++.||.||-.
T Consensus 11 RNigI~aHidaGKTTltE~lL~~tG~--i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERILFYTGI--ISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred eEEEEEeccCCChHHHHHHHHHHcCC--cCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 36789999999999999999854110 001232221100 0112345678777642 234 59999999999988
Q ss_pred hhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCc
Q 000665 565 FYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPS 644 (1363)
Q Consensus 565 y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~ 644 (1363)
|-.=-..=++ --+..++|+|+.+.. .+++. .-|-...+.+. |.+++.||.|+.....
T Consensus 89 Ft~EV~rslr---vlDgavvVvdaveGV------~~QTE----tv~rqa~~~~v----------p~i~fiNKmDR~~a~~ 145 (697)
T COG0480 89 FTIEVERSLR---VLDGAVVVVDAVEGV------EPQTE----TVWRQADKYGV----------PRILFVNKMDRLGADF 145 (697)
T ss_pred cHHHHHHHHH---hhcceEEEEECCCCe------eecHH----HHHHHHhhcCC----------CeEEEEECccccccCh
Confidence 8765555556 556788899986421 11121 33433333322 5799999999976432
Q ss_pred hhhHHHHHHHHHHHHHhcc
Q 000665 645 QDMQLTVSSIQRLKDKFQG 663 (1363)
Q Consensus 645 ~~~~~~~~~~~~lr~~f~~ 663 (1363)
. ...+.++.++..
T Consensus 146 ~------~~~~~l~~~l~~ 158 (697)
T COG0480 146 Y------LVVEQLKERLGA 158 (697)
T ss_pred h------hhHHHHHHHhCC
Confidence 2 234666666654
No 402
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=94.55 E-value=0.057 Score=62.71 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.5
Q ss_pred CceeEEecCccccchHHHHHHHhhc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
...+++++|.++||||||+++|.+.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~ 144 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGK 144 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3479999999999999999999975
No 403
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.46 E-value=0.061 Score=62.10 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.5
Q ss_pred CceeEEecCccccchHHHHHHHhhc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
...+++++|.+++|||||+++|.+.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999865
No 404
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=94.31 E-value=0.051 Score=60.54 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=82.8
Q ss_pred CCCceeEEecCccccchHHHHHHHhhcCCC--CCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC----
Q 000665 488 EPKSCRVFFCGQEYAGKTTLCNSISQNFSS--SKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG---- 561 (1363)
Q Consensus 488 ~~~~~kl~~vG~~~~GKTSL~~~L~~~~~~--~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG---- 561 (1363)
...+.++.++|..++||+||++.+..-... ...+. +..|..|+-. .-+-.+.+-|..|
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K-------------~g~Tq~in~f---~v~~~~~~vDlPG~~~a 196 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSK-------------NGKTQAINHF---HVGKSWYEVDLPGYGRA 196 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCC-------------Cccceeeeee---eccceEEEEecCCcccc
Confidence 345678999999999999999999865110 00001 1123322222 1233566667777
Q ss_pred -------chhhhhccccccccCCCCeE--EEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEE
Q 000665 562 -------QHEFYSLHDLMFPGHGSASC--FLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTV 632 (1363)
Q Consensus 562 -------Qe~y~~th~~Flt~~~~~al--yLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~Vil 632 (1363)
++---.|-++|+. ...+ +.+..|.+-. ++..+.....|+.. +++ |..+
T Consensus 197 ~y~~~~~~d~~~~t~~Y~le---R~nLv~~FLLvd~sv~--------i~~~D~~~i~~~ge------~~V------P~t~ 253 (320)
T KOG2486|consen 197 GYGFELPADWDKFTKSYLLE---RENLVRVFLLVDASVP--------IQPTDNPEIAWLGE------NNV------PMTS 253 (320)
T ss_pred cCCccCcchHhHhHHHHHHh---hhhhheeeeeeeccCC--------CCCCChHHHHHHhh------cCC------CeEE
Confidence 2222334444444 2222 3334455421 11122233456542 222 6899
Q ss_pred EEeccCCCCCCchhhHHHHHHHHH-HHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 633 VLTHYDKINQPSQDMQLTVSSIQR-LKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 633 VgTh~D~~~~~~~~~~~~~~~~~~-lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
|.||+|+.........+....++. +...-+..+....+-+.+|+.++.|++.|+-++.+.+
T Consensus 254 vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 254 VFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred eeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhhhh
Confidence 999999965432111100001110 1111111111222334588899999999887776543
No 405
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.22 E-value=0.04 Score=72.87 Aligned_cols=206 Identities=15% Similarity=0.111 Sum_probs=110.4
Q ss_pred CccEEEEecCCCCHHHHHHHHHHhHcCCCccEEEeecCC--CCHHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHH
Q 000665 103 NVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESG--IKNAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSK 180 (1363)
Q Consensus 103 ~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~--I~~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~ 180 (1363)
..+.+.+-+|.+.... . -..|+.|++|-+..|. +... -...+...+.|+.|||++|.=.. .|+.
T Consensus 524 ~~rr~s~~~~~~~~~~-----~-~~~~~~L~tLll~~n~~~l~~i----s~~ff~~m~~LrVLDLs~~~~l~----~LP~ 589 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIA-----G-SSENPKLRTLLLQRNSDWLLEI----SGEFFRSLPLLRVLDLSGNSSLS----KLPS 589 (889)
T ss_pred heeEEEEeccchhhcc-----C-CCCCCccceEEEeecchhhhhc----CHHHHhhCcceEEEECCCCCccC----cCCh
Confidence 4466666666654321 1 1246678888888875 2211 12235667788888888754322 2555
Q ss_pred HHhcCCCeeEEEccCCCCCChHHHHHHHHHhCCCceEEEccCCCCcchhHHHhhcCCCCcceeeccCchh---HHHHHHH
Q 000665 181 MIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSG---SCRVACS 257 (1363)
Q Consensus 181 ~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Ls~n~~~~~~~l~~~L~~~~~L~~L~Ls~~g---~~~L~~~ 257 (1363)
.++..-+|+.|+|+++.+. .++..+...+.|.+||+..+...... +..+..+++|+.+.+...+ -......
T Consensus 590 ~I~~Li~LryL~L~~t~I~----~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e 663 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGIS----HLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKE 663 (889)
T ss_pred HHhhhhhhhcccccCCCcc----ccchHHHHHHhhheeccccccccccc--cchhhhcccccEEEeeccccccchhhHHh
Confidence 6666677888888877643 47777888888888888877432222 3334456777777654332 1122223
Q ss_pred hcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhH
Q 000665 258 LGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGV 335 (1363)
Q Consensus 258 L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~ 335 (1363)
+..+.+|+.|....... .....+.....-.+....+.+.++.. ..++..+....+|+.|.+.++.+.+...
T Consensus 664 l~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-----~~~~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 664 LENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-----RTLISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred hhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhccccc-----ceeecccccccCcceEEEEcCCCchhhc
Confidence 34445555555433222 11111111111111122222222221 2244456778889999999888876543
No 406
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.12 E-value=0.019 Score=61.10 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=55.6
Q ss_pred ccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhh
Q 000665 264 VKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLS 343 (1363)
Q Consensus 264 L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~ 343 (1363)
=++++|.+.++....- ++.. ..+...+||++|.+...+ .+...+.|.+|.|++|+|+..+... .
T Consensus 21 e~e~~LR~lkip~ien--lg~~---~d~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nNrIt~I~p~L-~---- 84 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGAT---LDQFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNNRITRIDPDL-D---- 84 (233)
T ss_pred ccccccccccccchhh--cccc---ccccceecccccchhhcc------cCCCccccceEEecCCcceeeccch-h----
Confidence 3456666666543211 1111 234566777777765322 2455667777777777777654321 1
Q ss_pred hcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCC
Q 000665 344 RFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDD 394 (1363)
Q Consensus 344 ~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N 394 (1363)
....+|+.|.|. +|.|...|- + +-+..|++|++|.+-+|
T Consensus 85 -------~~~p~l~~L~Lt--nNsi~~l~d--l-~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 85 -------TFLPNLKTLILT--NNSIQELGD--L-DPLASCPKLEYLTLLGN 123 (233)
T ss_pred -------hhccccceEEec--Ccchhhhhh--c-chhccCCccceeeecCC
Confidence 123456677776 455544331 1 12445666777777666
No 407
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=94.03 E-value=0.068 Score=57.95 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.3
Q ss_pred eeEEecCccccchHHHHHHHhhc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
..++++|.+|+|||||+++|.+.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Confidence 47999999999999999999975
No 408
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=93.94 E-value=0.42 Score=55.44 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.0
Q ss_pred CCceeEEecCccccchHHHHHHHhhc
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 489 ~~~~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
+.++-+-+.|.-..|||||+-+|..+
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG 140 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTG 140 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEec
Confidence 34578889999999999999998755
No 409
>PRK13695 putative NTPase; Provisional
Probab=93.89 E-value=0.34 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.5
Q ss_pred eeEEecCccccchHHHHHHHhhc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
+|+.+.|.+|+|||||++.+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999997655
No 410
>PRK00098 GTPase RsgA; Reviewed
Probab=93.78 E-value=0.18 Score=58.80 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=56.2
Q ss_pred ccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHH
Q 000665 570 DLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQL 649 (1363)
Q Consensus 570 ~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~ 649 (1363)
+.... ..++.++|+|+++ ++.....+..||..+... ..|+++|+||+|+.... +.
T Consensus 75 q~iaa---niD~vllV~d~~~---------p~~~~~~idr~L~~~~~~---------~ip~iIVlNK~DL~~~~----~~ 129 (298)
T PRK00098 75 KLIAA---NVDQAVLVFAAKE---------PDFSTDLLDRFLVLAEAN---------GIKPIIVLNKIDLLDDL----EE 129 (298)
T ss_pred cceee---cCCEEEEEEECCC---------CCCCHHHHHHHHHHHHHC---------CCCEEEEEEhHHcCCCH----HH
Confidence 33456 7888999999864 122234568888877541 22689999999996321 11
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHH
Q 000665 650 TVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIR 690 (1363)
Q Consensus 650 ~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~ 690 (1363)
.....+.++ .+ + -.++.+|++++.|+++|++.|.
T Consensus 130 ~~~~~~~~~-~~-g-----~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 130 ARELLALYR-AI-G-----YDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred HHHHHHHHH-HC-C-----CeEEEEeCCCCccHHHHHhhcc
Confidence 111122221 21 1 2578999999999999988764
No 411
>COG1161 Predicted GTPases [General function prediction only]
Probab=93.70 E-value=0.086 Score=62.14 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=36.4
Q ss_pred ceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG 561 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG 561 (1363)
..+++++|-++||||||+++|.+...... + +.+ ..|.+....... -.+.++||.|
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~----s-------~~P--G~Tk~~q~i~~~---~~i~LlDtPG 186 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKT----S-------NRP--GTTKGIQWIKLD---DGIYLLDTPG 186 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceee----C-------CCC--ceecceEEEEcC---CCeEEecCCC
Confidence 46899999999999999999997633111 1 111 224444333332 2389999999
No 412
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=93.65 E-value=0.22 Score=59.09 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.5
Q ss_pred eeEEecCccccchHHHHHHHhhc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
+++.++|.++||||||.++|.+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~ 25 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKA 25 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999976
No 413
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=93.30 E-value=0.2 Score=69.12 Aligned_cols=126 Identities=18% Similarity=0.129 Sum_probs=69.8
Q ss_pred EEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC----ch----hh
Q 000665 494 VFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG----QH----EF 565 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG----Qe----~y 565 (1363)
.+++|++|+||||+++.--..|. ..+.... ..+.....|.- +.=|-.+ +-.++|++| |+ ..
T Consensus 114 YlviG~~gsGKtt~l~~sgl~~p-----l~~~~~~--~~~~~~~~t~~--c~wwf~~--~avliDtaG~y~~~~~~~~~~ 182 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNSGLKFP-----LAERLGA--AALRGVGGTRN--CDWWFTD--EAVLIDTAGRYTTQDSDPEED 182 (1169)
T ss_pred EEEECCCCCchhHHHHhCCCCCc-----Cchhhcc--ccccCCCCCcc--cceEecC--CEEEEcCCCccccCCCccccc
Confidence 58999999999999988743332 1110000 00000011211 1112222 334899999 32 45
Q ss_pred hhccccccc------cCCCCeEEEEEEeCCCCCCCCCCCChhhHH---HHHHHHHHHHHhhchhhhhccCCCeEEEEEec
Q 000665 566 YSLHDLMFP------GHGSASCFLIISSLFRKPTNREPKTPEEIE---EDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTH 636 (1363)
Q Consensus 566 ~~th~~Flt------~~~~~alyLLV~dl~~~~~~~~~~~~~~~~---~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh 636 (1363)
...+..|+. ...+-...|+++|+.+=. ..+.++.. ..+...|..+..... ...||+||.||
T Consensus 183 ~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll----~~~~~~~~~~a~~lR~rl~el~~~lg------~~~PVYvv~Tk 252 (1169)
T TIGR03348 183 AAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLL----TADPAERKAHARAIRQRLQELREQLG------ARFPVYLVLTK 252 (1169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHh----CCCHHHHHHHHHHHHHHHHHHHHHhC------CCCCEEEEEec
Confidence 556777776 112566789999886421 11223222 455566666665332 24589999999
Q ss_pred cCCC
Q 000665 637 YDKI 640 (1363)
Q Consensus 637 ~D~~ 640 (1363)
+|+.
T Consensus 253 ~Dll 256 (1169)
T TIGR03348 253 ADLL 256 (1169)
T ss_pred chhh
Confidence 9987
No 414
>PTZ00258 GTP-binding protein; Provisional
Probab=93.25 E-value=0.25 Score=59.27 Aligned_cols=89 Identities=12% Similarity=0.164 Sum_probs=50.8
Q ss_pred ceeEEecCccccchHHHHHHHhhcC-CCCCCcceeecccccccccCccCCcceEEEEEe---------------cCceEE
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQNF-SSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK---------------DEDTRI 554 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~~-~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~---------------~~~~~l 554 (1363)
.+++.++|.+++|||||.++|.+.. ....+|.... ....|+ ..+. ....++
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi-----------~p~~g~--v~~~d~r~~~l~~~~~~~~~~~aqi 87 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTI-----------DPNTAR--VNVPDERFDWLCKHFKPKSIVPAQL 87 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcc-----------cceEEE--EecccchhhHHHHHcCCcccCCCCe
Confidence 4699999999999999999997652 1111122110 011221 1111 123468
Q ss_pred EEEecCCchh----hhhccccccccCCCCeEEEEEEeCCCCC
Q 000665 555 SIWNLAGQHE----FYSLHDLMFPGHGSASCFLIISSLFRKP 592 (1363)
Q Consensus 555 ~iWDfaGQe~----y~~th~~Flt~~~~~alyLLV~dl~~~~ 592 (1363)
.+.|++|-.. -..+-.-|+.......+.+.|+|..++.
T Consensus 88 ~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~ 129 (390)
T PTZ00258 88 DITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFEDE 129 (390)
T ss_pred EEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCCCC
Confidence 9999999321 1111123444222688999999987543
No 415
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=93.24 E-value=1.6 Score=48.66 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=42.5
Q ss_pred eeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEec---CceEEEEEecCCchh
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKD---EDTRISIWNLAGQHE 564 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~---~~~~l~iWDfaGQe~ 564 (1363)
.-|.++|.+++|||||++.|.+... .+++.. .....|.||-+..... +...+.+.|+.|-..
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~--~f~~~~---------~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~ 72 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLS--GFDVMD---------TSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDG 72 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC--CeEecC---------CCCCCccceEEEeccccCCCcceEEEEecCCcCc
Confidence 4577999999999999999987521 111110 1235688877655432 468899999999653
No 416
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=93.01 E-value=0.28 Score=51.27 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=34.4
Q ss_pred eEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHH
Q 000665 629 NVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTS 693 (1363)
Q Consensus 629 ~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~ 693 (1363)
|+++|.||+|+... ...+ . ...+...+ ...++.+|++++.|+++|++.|.+..
T Consensus 43 p~iiv~NK~Dl~~~--~~~~---~-~~~~~~~~------~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 43 KLLIVLNKADLVPK--EVLE---K-WKSIKESE------GIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred cEEEEEEhHHhCCH--HHHH---H-HHHHHHhC------CCcEEEEEccccccHHHHHHHHHHHH
Confidence 69999999998531 1111 1 11122221 12578899999999999998887643
No 417
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=92.94 E-value=1.4 Score=52.43 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=47.2
Q ss_pred ccCCCCCCCCceeEEecCccccchHHHHHHHhhcCCCCCCccee----------------ecccccccccCccCCcceEE
Q 000665 481 LKDMPLTEPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIE----------------QVRTLVNPVEQAVRPVGMKI 544 (1363)
Q Consensus 481 lk~ip~~~~~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~----------------~~~~~~~p~~~~~~T~Gi~i 544 (1363)
|+++...+...+=+-+||+-.+||||++++++.-. -+|.+. .-+++.+..+.......+++
T Consensus 7 ykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~---VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I 83 (492)
T PF09547_consen 7 YKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMELL---VLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEI 83 (492)
T ss_pred HHHHHHhcCCceEEEeecCcccCchhHHHHHHHHh---cCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEE
Confidence 33333334455668899999999999999998641 122222 12222233333333445555
Q ss_pred EEEecCceEEEEEecCC
Q 000665 545 KTLKDEDTRISIWNLAG 561 (1363)
Q Consensus 545 ~~~~~~~~~l~iWDfaG 561 (1363)
.--.+-.+++++.||-|
T Consensus 84 ~l~~~~~~kVRLiDCVG 100 (492)
T PF09547_consen 84 TLDDGIKVKVRLIDCVG 100 (492)
T ss_pred EecCCceEEEEEEeecc
Confidence 54445678889999988
No 418
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=92.88 E-value=0.37 Score=50.47 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=51.1
Q ss_pred CCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHHHHHHH
Q 000665 578 SASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRL 657 (1363)
Q Consensus 578 ~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~~l 657 (1363)
..++.++|.|+++.. .+....+..+|... .. ..|+++|.||+|+... + +....++.+
T Consensus 8 ~aD~il~VvD~~~p~--------~~~~~~i~~~l~~~---~~-------~~p~ilVlNKiDl~~~--~---~~~~~~~~~ 64 (157)
T cd01858 8 SSDVVIQVLDARDPM--------GTRCKHVEEYLKKE---KP-------HKHLIFVLNKCDLVPT--W---VTARWVKIL 64 (157)
T ss_pred hCCEEEEEEECCCCc--------cccCHHHHHHHHhc---cC-------CCCEEEEEEchhcCCH--H---HHHHHHHHH
Confidence 678999999987521 11113334444321 11 1269999999999631 1 122233333
Q ss_pred HHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 658 KDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 658 r~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
++.+ . ..++.+|++++.++++|.+.|...
T Consensus 65 ~~~~----~--~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 65 SKEY----P--TIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred hcCC----c--EEEEEeeccccccHHHHHHHHHHH
Confidence 3322 1 125789999999999998888653
No 419
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.81 E-value=0.073 Score=36.93 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=10.5
Q ss_pred CCCCEEEccCCCCCHhhHHHHH
Q 000665 318 RSLESLYLHGNWFSGVGVEHLL 339 (1363)
Q Consensus 318 ~~L~~LdLs~N~l~~~g~~~L~ 339 (1363)
++|++|+|++|+|++.|+..|+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4455555555555555555543
No 420
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=92.75 E-value=1.6 Score=51.09 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=39.2
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe------cCceEEEEEecCC
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK------DEDTRISIWNLAG 561 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~------~~~~~l~iWDfaG 561 (1363)
.+.+|+||+.|.||||++++|.+. ..... ... +..+.....++++.... +-.++|++.||.|
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~--~~~-------~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpG 91 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDET--EID-------DIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPG 91 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCC--Ccc-------CcccccCCcceEEEeeeeeeecCCeEEEEEEeccCC
Confidence 478999999999999999999976 11110 000 11111123344444332 3477899999999
No 421
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.74 E-value=0.062 Score=64.28 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=29.6
Q ss_pred hcCCCcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCC-CChHHHHHHHHHHhcCCCCCEEEccCC
Q 000665 258 LGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTC-LKDKGVVYVAAGLFKNRSLESLYLHGN 328 (1363)
Q Consensus 258 L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~-L~d~g~~~L~~~L~~~~~L~~LdLs~N 328 (1363)
+..+.+++.|++++|.|+... . -..+|++|++++|. ++. ++..+ .++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-----~---LP~sLtsL~Lsnc~nLts-----LP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-----V---LPNELTEITIENCNNLTT-----LPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-----C---CCCCCcEEEccCCCCccc-----CCchh--hhhhhheEccCc
Confidence 344466777777777665421 1 12357777776643 221 22222 245677777766
No 422
>PRK13796 GTPase YqeH; Provisional
Probab=92.72 E-value=0.42 Score=57.42 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=52.6
Q ss_pred CCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHHHHHHH
Q 000665 578 SASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRL 657 (1363)
Q Consensus 578 ~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~~l 657 (1363)
..++.+.|+|+.+-. ..|...+..... ..|+++|+||+|+... ....+++....+..
T Consensus 69 ~~~lIv~VVD~~D~~---------------~s~~~~L~~~~~-------~kpviLViNK~DLl~~-~~~~~~i~~~l~~~ 125 (365)
T PRK13796 69 SDALVVNVVDIFDFN---------------GSWIPGLHRFVG-------NNPVLLVGNKADLLPK-SVKKNKVKNWLRQE 125 (365)
T ss_pred cCcEEEEEEECccCC---------------CchhHHHHHHhC-------CCCEEEEEEchhhCCC-ccCHHHHHHHHHHH
Confidence 466999999987511 234444543221 1259999999999632 22223232222322
Q ss_pred HHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 658 KDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 658 r~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.+.++ . . ...++.+|++++.|++++++.|.+
T Consensus 126 ~k~~g-~-~-~~~v~~vSAk~g~gI~eL~~~I~~ 156 (365)
T PRK13796 126 AKELG-L-R-PVDVVLISAQKGHGIDELLEAIEK 156 (365)
T ss_pred HHhcC-C-C-cCcEEEEECCCCCCHHHHHHHHHH
Confidence 22221 1 0 125789999999999999988865
No 423
>PRK12289 GTPase RsgA; Reviewed
Probab=92.64 E-value=0.44 Score=56.71 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=53.8
Q ss_pred CCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHHHHHHH
Q 000665 578 SASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRL 657 (1363)
Q Consensus 578 ~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~~l 657 (1363)
..+..++|+|+.+. .-....+..||..+.. . ..|++||+||+|++.. .. .....+.+
T Consensus 89 NvD~vLlV~d~~~p---------~~~~~~LdR~L~~a~~--~-------~ip~ILVlNK~DLv~~--~~---~~~~~~~~ 145 (352)
T PRK12289 89 NADQILLVFALAEP---------PLDPWQLSRFLVKAES--T-------GLEIVLCLNKADLVSP--TE---QQQWQDRL 145 (352)
T ss_pred cCCEEEEEEECCCC---------CCCHHHHHHHHHHHHH--C-------CCCEEEEEEchhcCCh--HH---HHHHHHHH
Confidence 67889999998741 1112356788876633 1 2368999999999632 11 11122222
Q ss_pred HHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 658 KDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 658 r~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
+. + ++ .++++|+.++.|+++|++.|..
T Consensus 146 ~~-~-g~-----~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 146 QQ-W-GY-----QPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred Hh-c-CC-----eEEEEEcCCCCCHHHHhhhhcc
Confidence 21 1 11 4688999999999999888864
No 424
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=92.60 E-value=0.43 Score=54.42 Aligned_cols=146 Identities=17% Similarity=0.207 Sum_probs=84.0
Q ss_pred eEEecCccccchHHHHHHHhhc--CC-CCCCcceeecccccccccCccCCcceEEEEEecCceEEEEEecCC--------
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN--FS-SSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAG-------- 561 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~--~~-~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaG-------- 561 (1363)
-+.+||-.++|||||+++|.+. .. ..-+.|.+. + ++-.. . ...-.+-+-|+-|
T Consensus 180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDp-------T-----~h~a~---L-psg~~vlltDTvGFisdLP~~ 243 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDP-------T-----LHSAH---L-PSGNFVLLTDTVGFISDLPIQ 243 (410)
T ss_pred eEEEEeecCccHHHHHHHHHhhhcCccchhheeccc-------h-----hhhcc---C-CCCcEEEEeechhhhhhCcHH
Confidence 5789999999999999999954 11 111111111 0 00000 0 2233556668888
Q ss_pred -chhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHh-hchhhhhccCCCeEEEEEeccCC
Q 000665 562 -QHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVS-NSRRAVQQCMLPNVTVVLTHYDK 639 (1363)
Q Consensus 562 -Qe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~-~~~~av~~~~~p~VilVgTh~D~ 639 (1363)
-+-|.+|.... . ..++.+=|.|++. | +.++..+.+..-|+.|.- -.|. .-.++=|-||+|.
T Consensus 244 LvaAF~ATLeeV-a---eadlllHvvDiSh------P-~ae~q~e~Vl~vL~~igv~~~pk------l~~mieVdnkiD~ 306 (410)
T KOG0410|consen 244 LVAAFQATLEEV-A---EADLLLHVVDISH------P-NAEEQRETVLHVLNQIGVPSEPK------LQNMIEVDNKIDY 306 (410)
T ss_pred HHHHHHHHHHHH-h---hcceEEEEeecCC------c-cHHHHHHHHHHHHHhcCCCcHHH------HhHHHhhcccccc
Confidence 24466666653 3 5899999999985 2 223333455555555432 0111 0125667888887
Q ss_pred CCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 640 INQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 640 ~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.....+. +.+ ..+.+||.+|.|.+++.+.+..
T Consensus 307 e~~~~e~------------E~n--------~~v~isaltgdgl~el~~a~~~ 338 (410)
T KOG0410|consen 307 EEDEVEE------------EKN--------LDVGISALTGDGLEELLKAEET 338 (410)
T ss_pred ccccCcc------------ccC--------CccccccccCccHHHHHHHHHH
Confidence 4322111 011 1367999999999998877765
No 425
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=0.13 Score=55.16 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=39.0
Q ss_pred CCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHHHHHHHHccccCcceEEEEecCCCCCCH
Q 000665 320 LESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRP 399 (1363)
Q Consensus 320 L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~N~~i~~ 399 (1363)
++.+|-++..|..+|...+ .....|+.|.+.. +-.+.+.+...|+. -.++|+.|+|++|..|++
T Consensus 103 IeaVDAsds~I~~eGle~L------------~~l~~i~~l~l~~-ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHL------------RDLRSIKSLSLAN-CKYFDDWCLERLGG---LAPSLQDLDLSGCPRITD 166 (221)
T ss_pred EEEEecCCchHHHHHHHHH------------hccchhhhheecc-ccchhhHHHHHhcc---cccchheeeccCCCeech
Confidence 4444444444444444444 1234444444432 33444444444444 234466666666555665
Q ss_pred HHHHHHHHHHhhCCCccEEEee
Q 000665 400 DDFVRIFKSLQKNASLRQLSLQ 421 (1363)
Q Consensus 400 ~gl~~L~~~L~~~~~L~~L~Ls 421 (1363)
.|+.-| ..+++|+.|.|.
T Consensus 167 ~GL~~L----~~lknLr~L~l~ 184 (221)
T KOG3864|consen 167 GGLACL----LKLKNLRRLHLY 184 (221)
T ss_pred hHHHHH----HHhhhhHHHHhc
Confidence 554332 234555555553
No 426
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=0.22 Score=58.40 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=40.4
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe----cCceEEEEEecCC
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK----DEDTRISIWNLAG 561 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~----~~~~~l~iWDfaG 561 (1363)
.+.+|+||++|.||||++++|... +... +.+..+......|..|+..... +-.++|+|-||.|
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~--------~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPG 88 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGN--------REVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPG 88 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCC--------cccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCC
Confidence 368999999999999999999866 2211 0110111112235555555443 3467889999999
No 427
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.10 E-value=0.094 Score=36.38 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=10.5
Q ss_pred CCccEEEccCCCCChHHHHHHH
Q 000665 290 QSLKEVILSKTCLKDKGVVYVA 311 (1363)
Q Consensus 290 ~~L~~LdLs~N~L~d~g~~~L~ 311 (1363)
++|++|+|++|.|++.|+..|+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4455555555555555555443
No 428
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=92.02 E-value=0.46 Score=55.17 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=57.4
Q ss_pred cccccccCCCCeEEEEEEeCCCCCCCCCCC-ChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhh
Q 000665 569 HDLMFPGHGSASCFLIISSLFRKPTNREPK-TPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDM 647 (1363)
Q Consensus 569 h~~Flt~~~~~alyLLV~dl~~~~~~~~~~-~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~ 647 (1363)
.|..+. ..++.++|+|+.+ +. ++ ..+..||..+... ..|+++|+||+|+... ...
T Consensus 72 ~~~i~a---nvD~vllV~d~~~------p~~s~----~~ldr~L~~~~~~---------~ip~iIVlNK~DL~~~--~~~ 127 (287)
T cd01854 72 EQVIAA---NVDQLVIVVSLNE------PFFNP----RLLDRYLVAAEAA---------GIEPVIVLTKADLLDD--EEE 127 (287)
T ss_pred ceeEEE---eCCEEEEEEEcCC------CCCCH----HHHHHHHHHHHHc---------CCCEEEEEEHHHCCCh--HHH
Confidence 455677 7889999999874 21 22 4567799877652 1258999999999642 110
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 648 QLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 648 ~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
. . .......+ + -.++.+|+.++.|+++|+..|..
T Consensus 128 ~---~-~~~~~~~~-g-----~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 128 E---L-ELVEALAL-G-----YPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred H---H-HHHHHHhC-C-----CeEEEEECCCCccHHHHHhhhcc
Confidence 0 0 11111111 1 25788999999999998887753
No 429
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.01 E-value=0.13 Score=61.72 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=17.1
Q ss_pred CcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCC
Q 000665 262 TTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKT 300 (1363)
Q Consensus 262 ~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N 300 (1363)
++|+.|++++|.... +...+ ..+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i~-----LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-----LPEKL--PESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-----Ccccc--cccCcEEEeccc
Confidence 467777777665432 11111 146677777655
No 430
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=91.89 E-value=0.29 Score=51.23 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.8
Q ss_pred ceeEEecCccccchHHHHHHHhhc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
..+++++|.+++|||||+++|.+.
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~ 123 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNK 123 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHcc
Confidence 357899999999999999999976
No 431
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=91.68 E-value=0.26 Score=55.79 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.3
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
..+++|.+|||||||+++|.+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 5789999999999999999975
No 432
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.68 E-value=0.25 Score=54.24 Aligned_cols=54 Identities=15% Similarity=0.341 Sum_probs=33.0
Q ss_pred EEEEEecCCchhhhhccccccccCCC-CeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHH
Q 000665 553 RISIWNLAGQHEFYSLHDLMFPGHGS-ASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIV 615 (1363)
Q Consensus 553 ~l~iWDfaGQe~y~~th~~Flt~~~~-~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~ 615 (1363)
-.++|..||-..-......=++.++- ..-.||+.|++. +++++-.++.-+..++
T Consensus 93 iaN~WELGgg~~~~~LLsVPit~~~l~~~slIL~LDls~---------p~~~W~t~E~~~~~~R 147 (363)
T KOG3929|consen 93 IANFWELGGGTSLLDLLSVPITGDTLRTFSLILVLDLSK---------PNDLWPTMENLLQATR 147 (363)
T ss_pred HHHHHHhcCCccHHHHhcCcccccchhhhhheeeeecCC---------hHHHHHHHHHHHHHHH
Confidence 35899999987766666655663322 233788899984 4555544444444443
No 433
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=91.60 E-value=0.94 Score=47.35 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=34.1
Q ss_pred eEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 629 NVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 629 ~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
|+++|.||+|+... .. ..+.+..+++.+ ...++.+|++++.|+++|++.|.+
T Consensus 31 p~IiVlNK~Dl~~~--~~---~~~~~~~~~~~~------~~~ii~vSa~~~~gi~~L~~~i~~ 82 (155)
T cd01849 31 KLILVLNKADLVPK--EV---LRKWLAYLRHSY------PTIPFKISATNGQGIEKKESAFTK 82 (155)
T ss_pred CEEEEEechhcCCH--HH---HHHHHHHHHhhC------CceEEEEeccCCcChhhHHHHHHH
Confidence 69999999999531 11 111222232221 135788999999999999888765
No 434
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=91.58 E-value=2.3 Score=49.00 Aligned_cols=144 Identities=17% Similarity=0.292 Sum_probs=86.4
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCC----CCCcceeecccccccccCccCCcceEEEEEe----cCceEEEEEecCC
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSS----SKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK----DEDTRISIWNLAG 561 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~----~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~----~~~~~l~iWDfaG 561 (1363)
+.+++-.+|.-.-|||||..++.+-... .+..+ ..+. ..++++..||.|...+ ...-.+.=-||.|
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~ky----deID--~APEEkaRGITIn~aHveYeTa~RhYaH~DCPG 126 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKY----DEID--KAPEEKARGITINAAHVEYETAKRHYAHTDCPG 126 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccH----hhhh--cChhhhhccceEeeeeeeeeccccccccCCCCc
Confidence 4678889999999999999888754111 11111 0011 1245677888887654 2344455569999
Q ss_pred chhhhhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCC
Q 000665 562 QHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKIN 641 (1363)
Q Consensus 562 Qe~y~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~ 641 (1363)
|..|-. -++++...-+..|||+.++|.+ -+++-+ . .+-++ +.+-+.+++-.||.|.+.
T Consensus 127 HADYIK---NMItGaaqMDGaILVVaatDG~------MPQTrE----H---lLLAr------QVGV~~ivvfiNKvD~V~ 184 (449)
T KOG0460|consen 127 HADYIK---NMITGAAQMDGAILVVAATDGP------MPQTRE----H---LLLAR------QVGVKHIVVFINKVDLVD 184 (449)
T ss_pred hHHHHH---HhhcCccccCceEEEEEcCCCC------CcchHH----H---HHHHH------HcCCceEEEEEecccccC
Confidence 999975 4677655677899999998632 222221 1 11221 122356899999999984
Q ss_pred CCchhhHHHHHHHHHHHHHhc
Q 000665 642 QPSQDMQLTVSSIQRLKDKFQ 662 (1363)
Q Consensus 642 ~~~~~~~~~~~~~~~lr~~f~ 662 (1363)
++ +..+-...-++++-..|+
T Consensus 185 d~-e~leLVEmE~RElLse~g 204 (449)
T KOG0460|consen 185 DP-EMLELVEMEIRELLSEFG 204 (449)
T ss_pred CH-HHHHHHHHHHHHHHHHcC
Confidence 32 333322223455555654
No 435
>PRK12288 GTPase RsgA; Reviewed
Probab=91.49 E-value=0.25 Score=58.75 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.5
Q ss_pred EEecCccccchHHHHHHHhhc
Q 000665 494 VFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~ 514 (1363)
.+++|.+|||||||+|+|.+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred EEEECCCCCCHHHHHHHhccc
Confidence 579999999999999999965
No 436
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.46 E-value=0.11 Score=55.47 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=42.5
Q ss_pred CcccEEEccCCCCChHHHHHHHHHHhhCCCccEEEccCCC-CChHHHHHHHHHHhcCCCCCEEEccCC-CCCHhhHHHHH
Q 000665 262 TTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTC-LKDKGVVYVAAGLFKNRSLESLYLHGN-WFSGVGVEHLL 339 (1363)
Q Consensus 262 ~~L~~LdLs~N~L~~~~~~~L~~~L~~n~~L~~LdLs~N~-L~d~g~~~L~~~L~~~~~L~~LdLs~N-~l~~~g~~~L~ 339 (1363)
..++.+|-+++.|..+|...|. ..+.|+.|.+.+|. +.|.+...+.. -.++|+.|+|++| +||+.|+..|.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~----~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLR----DLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHh----ccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHH
Confidence 4566677777777666665543 33566666666664 56666655543 3456666666644 36666666553
No 437
>PRK12289 GTPase RsgA; Reviewed
Probab=91.34 E-value=0.28 Score=58.39 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEecCccccchHHHHHHHhhc
Q 000665 494 VFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~ 514 (1363)
++++|.+|||||||+|+|...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCc
Confidence 689999999999999999965
No 438
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=91.27 E-value=0.45 Score=57.39 Aligned_cols=157 Identities=11% Similarity=0.095 Sum_probs=86.2
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcc--eE-EEEEecCceEEEEEecCCchhh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVG--MK-IKTLKDEDTRISIWNLAGQHEF 565 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~G--i~-i~~~~~~~~~l~iWDfaGQe~y 565 (1363)
+.+|+-+||..+.|||+|+++...+ |.. .+++.| .+ ....++....+.+.|-||.
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~------------------~e~~e~~~~kkE~vv~gqs~lLlirdeg~~--- 87 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQ------------------DESPEGGRFKKEVVVDGQSHLLLIRDEGGH--- 87 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceecc------------------ccCCcCccceeeEEeeccceEeeeecccCC---
Confidence 3579999999999999999988755 321 122333 11 1223356778899999993
Q ss_pred hhccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCch
Q 000665 566 YSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQ 645 (1363)
Q Consensus 566 ~~th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~ 645 (1363)
..-|| -. .....|+||.+.+ ..+++.+ -.+-+..-.-+. -..+|+++|||. |..+....
T Consensus 88 -~~aQf-t~---wvdavIfvf~~~d------~~s~q~v---~~l~~~l~~~r~------r~~i~l~lvgtq-d~iS~~~~ 146 (749)
T KOG0705|consen 88 -PDAQF-CQ---WVDAVVFVFSVED------EQSFQAV---QALAHEMSSYRN------ISDLPLILVGTQ-DHISAKRP 146 (749)
T ss_pred -chhhh-hh---hccceEEEEEecc------ccCHHHH---HHHHhhcccccc------cccchHHhhcCc-chhhcccc
Confidence 34454 34 6788889999864 1233222 111111111111 114578999997 44333222
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHHHH
Q 000665 646 DMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSR 694 (1363)
Q Consensus 646 ~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~ 694 (1363)
+.+...+..+...+.+. -..|...+.+|.++...++.+...+.
T Consensus 147 rv~~da~~r~l~~~~kr------csy~et~atyGlnv~rvf~~~~~k~i 189 (749)
T KOG0705|consen 147 RVITDDRARQLSAQMKR------CSYYETCATYGLNVERVFQEVAQKIV 189 (749)
T ss_pred cccchHHHHHHHHhcCc------cceeecchhhhhhHHHHHHHHHHHHH
Confidence 21111111122222221 12366677788888888877765433
No 439
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=90.84 E-value=0.26 Score=53.17 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=20.6
Q ss_pred CceeEEecCccccchHHHHHHHh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSIS 512 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~ 512 (1363)
..+|++++|.+.+||||+++.+.
T Consensus 38 relkllllgtgesgkstfikqmr 60 (359)
T KOG0085|consen 38 RELKLLLLGTGESGKSTFIKQMR 60 (359)
T ss_pred hhheeeeecCCCcchhhHHHHHH
Confidence 45799999999999999998874
No 440
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=90.54 E-value=0.94 Score=53.75 Aligned_cols=122 Identities=10% Similarity=0.106 Sum_probs=73.2
Q ss_pred eEEecCccccchHHHHHHHhh--cCCCC------CCcceeecccccccccCccCCcceEEEE----EecCceEEEEEecC
Q 000665 493 RVFFCGQEYAGKTTLCNSISQ--NFSSS------KLPYIEQVRTLVNPVEQAVRPVGMKIKT----LKDEDTRISIWNLA 560 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~--~~~~~------~~~t~~~~~~~~~p~~~~~~T~Gi~i~~----~~~~~~~l~iWDfa 560 (1363)
...++-.+.||||||...|.- +.... +.......+.|+.- +...||.|.+ ++..+..+++-||.
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~i----EkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEI----EKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHH----HHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 466889999999999998862 11000 00001112233322 2457887765 44678999999999
Q ss_pred Cchhhhh-ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCC
Q 000665 561 GQHEFYS-LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDK 639 (1363)
Q Consensus 561 GQe~y~~-th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~ 639 (1363)
||+.|-. |++. |+ ..+-.+.|.|+.. ..+.. -..-++.-+.| .-||+-..||.|.
T Consensus 90 GHeDFSEDTYRt-Lt---AvDsAvMVIDaAK--------GiE~q---T~KLfeVcrlR---------~iPI~TFiNKlDR 145 (528)
T COG4108 90 GHEDFSEDTYRT-LT---AVDSAVMVIDAAK--------GIEPQ---TLKLFEVCRLR---------DIPIFTFINKLDR 145 (528)
T ss_pred CccccchhHHHH-HH---hhheeeEEEeccc--------CccHH---HHHHHHHHhhc---------CCceEEEeecccc
Confidence 9998865 4443 55 5666788889864 21211 11222222221 2379999999999
Q ss_pred CCC
Q 000665 640 INQ 642 (1363)
Q Consensus 640 ~~~ 642 (1363)
...
T Consensus 146 ~~r 148 (528)
T COG4108 146 EGR 148 (528)
T ss_pred ccC
Confidence 643
No 441
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=90.29 E-value=1.2 Score=46.27 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.7
Q ss_pred EEecCccccchHHHHHHHhhc
Q 000665 494 VFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~ 514 (1363)
+.++|.+|+||||++..+...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 678999999999999999765
No 442
>PRK13796 GTPase YqeH; Provisional
Probab=90.08 E-value=0.45 Score=57.18 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
+++++|.++||||||+++|.+.
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhh
Confidence 7899999999999999999865
No 443
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=89.95 E-value=1.3 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.4
Q ss_pred eeEEecCccccchHHHHHHHhhc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
...+++|+.|+||||.+.++...
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h 26 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEH 26 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHH
Confidence 46789999999999999999854
No 444
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=89.92 E-value=0.23 Score=53.23 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=36.8
Q ss_pred cEEEccCCCCChHHHHHHHHHHhcCCCCCEEEccCCCCCHhhHHHHHhhhhhcccccccCCCceeEEEeeCCCCCCCHHH
Q 000665 293 KEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDG 372 (1363)
Q Consensus 293 ~~LdLs~N~L~d~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~~L~~~~~~~L~~L~Lsg~~N~i~~~g 372 (1363)
++++|.+.++...+- +. ........+||++|++...+. | .....|.+|.|+ +|+|+...
T Consensus 22 ~e~~LR~lkip~ien--lg---~~~d~~d~iDLtdNdl~~l~~------l--------p~l~rL~tLll~--nNrIt~I~ 80 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN--LG---ATLDQFDAIDLTDNDLRKLDN------L--------PHLPRLHTLLLN--NNRITRID 80 (233)
T ss_pred cccccccccccchhh--cc---ccccccceecccccchhhccc------C--------CCccccceEEec--CCcceeec
Confidence 456666665542111 00 122345566777776654321 1 234566666665 56665533
Q ss_pred HHHHHHccccCcceEEEEecCC
Q 000665 373 IAAILQMLTTNETVTQLGIYDD 394 (1363)
Q Consensus 373 ~~~L~~~L~~~~~L~~L~Ls~N 394 (1363)
- .|. ..+++|..|.|.+|
T Consensus 81 p-~L~---~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 81 P-DLD---TFLPNLKTLILTNN 98 (233)
T ss_pred c-chh---hhccccceEEecCc
Confidence 1 111 22344566666666
No 445
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=89.73 E-value=2.2 Score=47.06 Aligned_cols=120 Identities=21% Similarity=0.196 Sum_probs=69.5
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCC--CC-CcceeecccccccccCccCCcceEEEEEecCceEEEEEecCCchhhh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSS--SK-LPYIEQVRTLVNPVEQAVRPVGMKIKTLKDEDTRISIWNLAGQHEFY 566 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~--~~-~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~ 566 (1363)
..+++.++|-+.||||||+..+....+. ++ +.|... -+|+ ..-....+.+-|..|--+=-
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtc-------------IpGv----i~y~ga~IQllDLPGIieGA 123 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTC-------------IPGV----IHYNGANIQLLDLPGIIEGA 123 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEe-------------ecce----EEecCceEEEecCccccccc
Confidence 3579999999999999999999866321 11 111111 1111 11245577888998832111
Q ss_pred hc----cccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCC
Q 000665 567 SL----HDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKI 640 (1363)
Q Consensus 567 ~t----h~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~ 640 (1363)
+- -+-.++....+++.+.|.|++. .+...+-+.+=|+.+--|..+ .+|.|.+-..|..-+
T Consensus 124 sqgkGRGRQviavArtaDlilMvLDatk---------~e~qr~~le~ELe~vGiRLNk-----~~Pniy~k~kk~gGi 187 (364)
T KOG1486|consen 124 SQGKGRGRQVIAVARTADLILMVLDATK---------SEDQREILEKELEAVGIRLNK-----RKPNIYFKKKKTGGI 187 (364)
T ss_pred ccCCCCCceEEEEeecccEEEEEecCCc---------chhHHHHHHHHHHHhceeccC-----CCCCeEEEeeccCCe
Confidence 10 0111222226788999999984 233335677777777655433 256677766665543
No 446
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=89.51 E-value=0.45 Score=57.07 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.3
Q ss_pred eeEEecCccccchHHHHHHHhhc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
.+++++|.++||||||+++|.+.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 38999999999999999999975
No 447
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=89.21 E-value=0.59 Score=54.29 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
.+.++|.+|||||||++.|.+.
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhch
Confidence 6899999999999999999976
No 448
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.13 E-value=0.53 Score=48.78 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=40.1
Q ss_pred CceeEEecCccccchHHHHHHHhhcCCCCCCcceeecccccccccCccCCcceEEEEEe--cCceEEEEEecCCchhhhh
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK--DEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~--~~~~~l~iWDfaGQe~y~~ 567 (1363)
..+|+.+-|.+|+||||++..+........+. --|+-...+. ++.+-|.|-|.+--+++.-
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k-----------------vgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~l 66 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYK-----------------VGGFITPEVREGGKRIGFKIVDLATGEEGIL 66 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCce-----------------eeeEEeeeeecCCeEeeeEEEEccCCceEEE
Confidence 45899999999999999999998552111110 1223333332 3566788888884444444
Q ss_pred ccccc
Q 000665 568 LHDLM 572 (1363)
Q Consensus 568 th~~F 572 (1363)
.+.-|
T Consensus 67 a~~~~ 71 (179)
T COG1618 67 ARVGF 71 (179)
T ss_pred EEcCC
Confidence 44444
No 449
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=88.65 E-value=0.29 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.1
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
++++.|.+|+||||+++.|.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999975
No 450
>PRK12288 GTPase RsgA; Reviewed
Probab=88.62 E-value=2.3 Score=50.73 Aligned_cols=86 Identities=10% Similarity=0.161 Sum_probs=52.9
Q ss_pred CCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHHHHHHH
Q 000665 578 SASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRL 657 (1363)
Q Consensus 578 ~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~~l 657 (1363)
.-+.++||+++..+ .++ ..+..||..+.. . ..|++||+||+|+.... ..+.. +..
T Consensus 120 NvD~vlIV~s~~p~------~s~----~~Ldr~L~~a~~--------~-~i~~VIVlNK~DL~~~~--~~~~~----~~~ 174 (347)
T PRK12288 120 NIDQIVIVSAVLPE------LSL----NIIDRYLVACET--------L-GIEPLIVLNKIDLLDDE--GRAFV----NEQ 174 (347)
T ss_pred EccEEEEEEeCCCC------CCH----HHHHHHHHHHHh--------c-CCCEEEEEECccCCCcH--HHHHH----HHH
Confidence 56678899987531 122 567889875543 1 12578999999996422 11111 111
Q ss_pred HHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 658 KDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 658 r~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
...|... .-.+|.+|+.++.|+++|++.|..
T Consensus 175 ~~~y~~~---g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 175 LDIYRNI---GYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred HHHHHhC---CCeEEEEeCCCCcCHHHHHHHHhh
Confidence 2222111 126789999999999999988754
No 451
>PRK00098 GTPase RsgA; Reviewed
Probab=88.58 E-value=0.8 Score=53.49 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.1
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
.++++|.+|||||||+++|.+.
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999865
No 452
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.29 E-value=0.7 Score=51.38 Aligned_cols=58 Identities=21% Similarity=0.413 Sum_probs=39.6
Q ss_pred ceeEEecCccccchHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEe----cCceEEEEEecCC
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLK----DEDTRISIWNLAG 561 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~----~~~~~l~iWDfaG 561 (1363)
.+.++.||..|.|||||+..|... |... |......+++....+.. +-..++.|.|+.|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~-------------p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESE-------------PSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCC-------------CCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 478999999999999999999876 3321 22222334444444443 3466788999998
No 453
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.25 E-value=1.3 Score=53.12 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.9
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
.++++|++|+||||++..|...
T Consensus 139 ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999865
No 454
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=88.20 E-value=1.2 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.3
Q ss_pred eeEEecCccccchHHHHHHHhhc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
--++++|++|+||||++..|...
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46789999999999999999865
No 455
>PRK14737 gmk guanylate kinase; Provisional
Probab=88.06 E-value=0.82 Score=49.52 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=20.5
Q ss_pred eEEecCccccchHHHHHHHhhcC
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNF 515 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~ 515 (1363)
=++++|++|+|||||++.|....
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999998763
No 456
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=88.02 E-value=0.34 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.3
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
-++++|++|||||||+|.|...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999976
No 457
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=87.95 E-value=0.94 Score=46.54 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=41.8
Q ss_pred CCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCCCCCCchhhHHHHHHHHHH
Q 000665 578 SASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDKINQPSQDMQLTVSSIQRL 657 (1363)
Q Consensus 578 ~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~~~~~~~~~~~~~~~~~~l 657 (1363)
..++.++|+|+++.. + .....+..|+.... ++ -|+++|.||+|+... .. .....+.+
T Consensus 11 ~aD~vl~ViD~~~p~------~--~~~~~l~~~l~~~~---~~-------k~~iivlNK~DL~~~--~~---~~~~~~~~ 67 (141)
T cd01857 11 RSDIVVQIVDARNPL------L--FRPPDLERYVKEVD---PR-------KKNILLLNKADLLTE--EQ---RKAWAEYF 67 (141)
T ss_pred hCCEEEEEEEccCCc------c--cCCHHHHHHHHhcc---CC-------CcEEEEEechhcCCH--HH---HHHHHHHH
Confidence 678999999987421 1 11235566665431 11 269999999999531 11 11122222
Q ss_pred HHHhccccCCCCcEEEEcCCCCCC
Q 000665 658 KDKFQGFVDFYPTVFTIDARSSAS 681 (1363)
Q Consensus 658 r~~f~~~~~i~~~v~~vs~~~~~~ 681 (1363)
+... ..++++|+.++.+
T Consensus 68 ~~~~-------~~ii~iSa~~~~~ 84 (141)
T cd01857 68 KKEG-------IVVVFFSALKENA 84 (141)
T ss_pred HhcC-------CeEEEEEecCCCc
Confidence 2211 2468899988753
No 458
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=87.64 E-value=1.9 Score=45.42 Aligned_cols=21 Identities=43% Similarity=0.396 Sum_probs=19.0
Q ss_pred EEecCccccchHHHHHHHhhc
Q 000665 494 VFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~ 514 (1363)
+.+.|..|+|||||++.+.+.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999999876
No 459
>PRK08118 topology modulation protein; Reviewed
Probab=87.58 E-value=0.37 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=20.8
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
|++++|.+|+|||||++.|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999975
No 460
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=87.36 E-value=0.62 Score=50.02 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=18.1
Q ss_pred EEecCccccchHHHHHHHhh
Q 000665 494 VFFCGQEYAGKTTLCNSISQ 513 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~ 513 (1363)
.++.|--|+|||||++.+..
T Consensus 3 ~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57889999999999999994
No 461
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=86.75 E-value=1.8 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.4
Q ss_pred eeEEecCccccchHHHHHHHhhc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
-.++++|.+|+||||.+..|...
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35778899999999998888755
No 462
>PRK14974 cell division protein FtsY; Provisional
Probab=86.73 E-value=0.98 Score=53.41 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=19.9
Q ss_pred ceeEEecCccccchHHHHHHHhhc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
...++++|.+|+||||++..|...
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999987777644
No 463
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=86.66 E-value=0.44 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.3
Q ss_pred eeEEecCccccchHHHHHHHhhc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
+|++++|.+|+||||+++.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999976
No 464
>PRK07261 topology modulation protein; Provisional
Probab=86.38 E-value=0.47 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.3
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
|++++|.+|+|||||++.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999754
No 465
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=86.15 E-value=2.8 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=20.3
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
.+.++|+.|+|||||++.|.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 7889999999999999999865
No 466
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=86.00 E-value=2.9 Score=44.48 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.4
Q ss_pred EEecCccccchHHHHHHHhhc
Q 000665 494 VFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~ 514 (1363)
++++|.+|+||||++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578899999999999888765
No 467
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=85.98 E-value=2.5 Score=46.80 Aligned_cols=36 Identities=8% Similarity=0.163 Sum_probs=28.2
Q ss_pred CCcceEEEEEecCceEEEEEecCCchhhhhcc-cccc
Q 000665 538 RPVGMKIKTLKDEDTRISIWNLAGQHEFYSLH-DLMF 573 (1363)
Q Consensus 538 ~T~Gi~i~~~~~~~~~l~iWDfaGQe~y~~th-~~Fl 573 (1363)
-|.||--..+.-+.++|+++|.|||..-+--| |+|=
T Consensus 188 lTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFn 224 (379)
T KOG0099|consen 188 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFN 224 (379)
T ss_pred hccceeeEEEeccccceeeeccCCchhhhhhHHHHhc
Confidence 37888888887788999999999997665554 5553
No 468
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=85.45 E-value=2.5 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=20.4
Q ss_pred ceeEEecCccccchHHHHHHHhhc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
...++++|.+|+||||++..|...
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988743
No 469
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=85.35 E-value=0.86 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=19.5
Q ss_pred eEEecCccccchHHHHHHHhhcC
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNF 515 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~ 515 (1363)
++++-|.+|+|||||++.+....
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58899999999999999998663
No 470
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=85.34 E-value=2.3 Score=47.10 Aligned_cols=21 Identities=33% Similarity=0.170 Sum_probs=18.3
Q ss_pred EEecCccccchHHHHHHHhhc
Q 000665 494 VFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~ 514 (1363)
+-++|..||||||..+.+.+-
T Consensus 31 ~GllG~NGAGKTTtfRmILgl 51 (300)
T COG4152 31 FGLLGPNGAGKTTTFRMILGL 51 (300)
T ss_pred EEeecCCCCCccchHHHHhcc
Confidence 458999999999999999864
No 471
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.31 E-value=0.26 Score=54.90 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=7.6
Q ss_pred CCccEEEccCCCCCh
Q 000665 290 QSLKEVILSKTCLKD 304 (1363)
Q Consensus 290 ~~L~~LdLs~N~L~d 304 (1363)
++|++|+||+|+|.+
T Consensus 91 P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKD 105 (260)
T ss_pred CceeEEeecCCcccc
Confidence 455555555555543
No 472
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=85.26 E-value=0.53 Score=48.14 Aligned_cols=21 Identities=29% Similarity=0.718 Sum_probs=19.2
Q ss_pred EEecCccccchHHHHHHHhhc
Q 000665 494 VFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~ 514 (1363)
++++|.+|+||||+++.|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999854
No 473
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=85.24 E-value=1.6 Score=55.14 Aligned_cols=121 Identities=15% Similarity=0.210 Sum_probs=74.6
Q ss_pred eEEecCccccchHHHHHHHhhcCCCCCCcc-eeecccccccccCccCCcceEEEEEe----cCceEEEEEecCCchhhhh
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNFSSSKLPY-IEQVRTLVNPVEQAVRPVGMKIKTLK----DEDTRISIWNLAGQHEFYS 567 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~~~~~~~t-~~~~~~~~~p~~~~~~T~Gi~i~~~~----~~~~~l~iWDfaGQe~y~~ 567 (1363)
.+.++-.-.-|||||+.+|...... -.++ .|.+|-.. ..+.+.|.||..+.-. .++..+++.|..||-.|-+
T Consensus 11 n~~~vahvdhgktsladsl~asngv-is~rlagkirfld--~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 11 NICLVAHVDHGKTSLADSLVASNGV-ISSRLAGKIRFLD--TREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred EEEEEEEecCCccchHHHHHhhccE-echhhccceeecc--ccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 5677888889999999999855111 0111 12222221 1234678998887643 4788999999999999987
Q ss_pred ccccccccCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEeccCC
Q 000665 568 LHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHYDK 639 (1363)
Q Consensus 568 th~~Flt~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~D~ 639 (1363)
--+.-.. =.+.+++++|+.+. -..++..---+-|.+-+ .+++|.||+|.
T Consensus 88 evssas~---l~d~alvlvdvveg------v~~qt~~vlrq~~~~~~--------------~~~lvinkidr 136 (887)
T KOG0467|consen 88 EVSSASR---LSDGALVLVDVVEG------VCSQTYAVLRQAWIEGL--------------KPILVINKIDR 136 (887)
T ss_pred hhhhhhh---hcCCcEEEEeeccc------cchhHHHHHHHHHHccC--------------ceEEEEehhhh
Confidence 6655444 34556777887641 12233311112254432 36999999994
No 474
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=85.09 E-value=0.74 Score=48.47 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.0
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
.+.++|.+|+|||||+.+|...
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999975
No 475
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=84.82 E-value=3.4 Score=43.92 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=33.8
Q ss_pred eEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHHH
Q 000665 629 NVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKT 692 (1363)
Q Consensus 629 ~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~ 692 (1363)
|+++|.||+|+... ... ....+.++.. ...++.+|+.++.|+++|.+.|...
T Consensus 48 ~~ilVlNK~Dl~~~--~~~---~~~~~~~~~~-------~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 48 PRIIVLNKADLADP--KKT---KKWLKYFESK-------GEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred CEEEEEehhhcCCh--HHH---HHHHHHHHhc-------CCeEEEEECCCcccHHHHHHHHHHH
Confidence 58999999999531 111 1112222221 1357889999999999998887663
No 476
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.22 E-value=2.2 Score=49.99 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=20.5
Q ss_pred CceeEEecCccccchHHHHHHHhhc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
.+--+++||-.|+||||.+-.|..-
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y 124 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYY 124 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHH
Confidence 3446899999999999998888644
No 477
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=83.82 E-value=3.6 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.2
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
-+++.|++|+||||.++.|.++
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999987
No 478
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=83.76 E-value=7.6 Score=47.13 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.6
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
+|++||+..+||||.+..+.+.
T Consensus 310 RVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 310 RVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred eEEEEcCccccchHHHHHHHHh
Confidence 8999999999999999999876
No 479
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=83.65 E-value=3.7 Score=48.97 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=51.5
Q ss_pred eeEEecCccccchHHHHHHHhhcCC--CCCCcceeecccccccccCccCCcceEEE-E---------E---ecCceEEEE
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQNFS--SSKLPYIEQVRTLVNPVEQAVRPVGMKIK-T---------L---KDEDTRISI 556 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~~~--~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~-~---------~---~~~~~~l~i 556 (1363)
+|+-++|.+++|||||.++|.+... ...+|+... ....|+-.. . + ......+.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi-----------~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~ 71 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTI-----------EPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEF 71 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCC-----------CCceeEEEechhHHHHHHHHhCCcCcCCceEEE
Confidence 5889999999999999999997632 222232110 001121110 0 0 012346788
Q ss_pred EecCCchhh----hhccccccccCCCCeEEEEEEeCCCCC
Q 000665 557 WNLAGQHEF----YSLHDLMFPGHGSASCFLIISSLFRKP 592 (1363)
Q Consensus 557 WDfaGQe~y----~~th~~Flt~~~~~alyLLV~dl~~~~ 592 (1363)
.|.||-..= ...-..|+......++++.|++..+++
T Consensus 72 ~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~d~ 111 (368)
T TIGR00092 72 VDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFEDD 111 (368)
T ss_pred EeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCCCc
Confidence 899994321 112223454322678899999987653
No 480
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=83.62 E-value=0.39 Score=52.38 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=26.1
Q ss_pred ceEEEEEecCCchhhhhccccc------cccCCCCeEEEEEEeCCC
Q 000665 551 DTRISIWNLAGQHEFYSLHDLM------FPGHGSASCFLIISSLFR 590 (1363)
Q Consensus 551 ~~~l~iWDfaGQe~y~~th~~F------lt~~~~~alyLLV~dl~~ 590 (1363)
.-..-++||.||-+++..|... +. +...=++++++.|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Le---k~~~rl~~V~LiD 138 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLE---KLDYRLVAVNLID 138 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHH---HcCceEEEEEeee
Confidence 3467899999999998888542 33 4555666777764
No 481
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=83.61 E-value=1.9 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEecCccccchHHHHHHHhhcC
Q 000665 494 VFFCGQEYAGKTTLCNSISQNF 515 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~~ 515 (1363)
++++|++|+||+||++.|...+
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999999774
No 482
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=83.56 E-value=2.1 Score=43.83 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEecCccccchHHHHHHHhhcC
Q 000665 494 VFFCGQEYAGKTTLCNSISQNF 515 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~~ 515 (1363)
++++|++|+|||||++.|.+.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999764
No 483
>PRK10867 signal recognition particle protein; Provisional
Probab=83.28 E-value=2.6 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=19.3
Q ss_pred ceeEEecCccccchHHHHHHHhhc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
..-++++|.+|+||||.+-.|...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 357899999999999977766543
No 484
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.22 E-value=2.8 Score=45.82 Aligned_cols=103 Identities=16% Similarity=0.216 Sum_probs=59.1
Q ss_pred eEEecCcccc--chHHHHHHHhhc-CCCCCCcceeecccccccccCccCCcceEEEEEec------CceE---EEEEecC
Q 000665 493 RVFFCGQEYA--GKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTLKD------EDTR---ISIWNLA 560 (1363)
Q Consensus 493 kl~~vG~~~~--GKTSL~~~L~~~-~~~~~~~t~~~~~~~~~p~~~~~~T~Gi~i~~~~~------~~~~---l~iWDfa 560 (1363)
-++++|..|| ||-+|.++|... |.... .+....++.-|+- ..+. .+++|
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~s-----------------es~~~te~hgwtid~kyysadi~lcishicd-- 66 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDES-----------------ESNDATEFHGWTIDNKYYSADINLCISHICD-- 66 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeec-----------------cccCceeeeceEecceeeecceeEEeecccc--
Confidence 4688999999 999999999865 43211 1112223333331 1111 12332
Q ss_pred Cchhhhhccccccc---cCCCCeEEEEEEeCCCCCCCCCCCChhhHHHHHHHHHHHHHhhchhhhhccCCCeEEEEEecc
Q 000665 561 GQHEFYSLHDLMFP---GHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLTHY 637 (1363)
Q Consensus 561 GQe~y~~th~~Flt---~~~~~alyLLV~dl~~~~~~~~~~~~~~~~~~l~~WL~~I~~~~~~av~~~~~p~VilVgTh~ 637 (1363)
..|+. ...+-..|++|||++++ .--..+..|+..-.-+. .--.++||||.
T Consensus 67 ---------e~~lpn~~~a~pl~a~vmvfdlse~----------s~l~alqdwl~htdins--------fdillcignkv 119 (418)
T KOG4273|consen 67 ---------EKFLPNAEIAEPLQAFVMVFDLSEK----------SGLDALQDWLPHTDINS--------FDILLCIGNKV 119 (418)
T ss_pred ---------hhccCCcccccceeeEEEEEeccch----------hhhHHHHhhcccccccc--------chhheeccccc
Confidence 23333 11156679999999852 22367788986432211 11379999999
Q ss_pred CCCC
Q 000665 638 DKIN 641 (1363)
Q Consensus 638 D~~~ 641 (1363)
|.+.
T Consensus 120 drvp 123 (418)
T KOG4273|consen 120 DRVP 123 (418)
T ss_pred cccc
Confidence 9974
No 485
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=82.74 E-value=0.94 Score=40.42 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.6
Q ss_pred EEecCccccchHHHHHHHhhcC
Q 000665 494 VFFCGQEYAGKTTLCNSISQNF 515 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~~ 515 (1363)
+.+.|.+|+||||+.+.|...+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999764
No 486
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=82.62 E-value=0.95 Score=49.28 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=24.0
Q ss_pred cCCCCCCCCceeEEecCccccchHHHHHHHhh
Q 000665 482 KDMPLTEPKSCRVFFCGQEYAGKTTLCNSISQ 513 (1363)
Q Consensus 482 k~ip~~~~~~~kl~~vG~~~~GKTSL~~~L~~ 513 (1363)
+.+..+...-=.+.++|++|+|||||++++..
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 33333333334789999999999999999985
No 487
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=82.62 E-value=0.96 Score=48.22 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=20.4
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
-++++|++|||||||++-|...
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999875
No 488
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=82.55 E-value=0.76 Score=48.42 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=17.6
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
|+.+.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7899999999999999999864
No 489
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=82.49 E-value=1.1 Score=51.52 Aligned_cols=33 Identities=18% Similarity=0.480 Sum_probs=26.1
Q ss_pred CceeEEecCccccchHHHHHHHhhc-CCCCCCcc
Q 000665 490 KSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPY 522 (1363)
Q Consensus 490 ~~~kl~~vG~~~~GKTSL~~~L~~~-~~~~~~~t 522 (1363)
..+|+-+||-+++||||+.++|.+. .....+|+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF 52 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPF 52 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCc
Confidence 4579999999999999999999987 33333444
No 490
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.05 E-value=0.62 Score=51.97 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=30.4
Q ss_pred CCCccEEEeecCCCC-HHHHHHHHHHhccCCCccEEEccCCCCChhhHHHHHHHHhcCCCeeEEEccCCC
Q 000665 129 NGVIKEVMFTESGIK-NAGASLLASALKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSS 197 (1363)
Q Consensus 129 ~~~L~~L~Ls~n~I~-~~g~~~L~~~L~~~~sL~~L~Ls~N~i~~~g~~~L~~~L~~~~~L~~L~Ls~n~ 197 (1363)
.++|++|.+|.|... ..+...++ ..+++|++|+|++|+|.+ +..+. .++...+|..|++.+|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~---e~~P~l~~l~ls~Nki~~--lstl~-pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLA---EKAPNLKVLNLSGNKIKD--LSTLR-PLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehh---hhCCceeEEeecCCcccc--ccccc-hhhhhcchhhhhcccCC
Confidence 445666666666222 11222222 223566666666666654 12221 22334556666666664
No 491
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=81.99 E-value=0.88 Score=45.30 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEecCccccchHHHHHHHhhc
Q 000665 494 VFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~ 514 (1363)
+++.|.+|+||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999965
No 492
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=81.48 E-value=1.7 Score=46.43 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred eEEecCccccchHHHHHHHhhcC
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNF 515 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~ 515 (1363)
=+++.|++|||||||++.|...+
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 36789999999999999999874
No 493
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=81.29 E-value=1.2 Score=38.93 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.3
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
-.++.|+.|+|||||+.++.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998754
No 494
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=81.20 E-value=1.1 Score=44.60 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.1
Q ss_pred eEEecCccccchHHHHHHHhhcC
Q 000665 493 RVFFCGQEYAGKTTLCNSISQNF 515 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~~ 515 (1363)
.++++|++|+||||+++.+....
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 4 VILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhcc
Confidence 68999999999999999999774
No 495
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=81.17 E-value=1.1 Score=44.87 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.4
Q ss_pred EEecCccccchHHHHHHHhhc
Q 000665 494 VFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 494 l~~vG~~~~GKTSL~~~L~~~ 514 (1363)
+++.|++|+|||++++.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 578999999999999999976
No 496
>PRK06217 hypothetical protein; Validated
Probab=81.06 E-value=1.1 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.2
Q ss_pred eeEEecCccccchHHHHHHHhhc
Q 000665 492 CRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 492 ~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
.++++.|.+|+||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999975
No 497
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=80.89 E-value=1.6 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=20.0
Q ss_pred eEEecCccccchHHHHHHHhhc
Q 000665 493 RVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 493 kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
-+.++|..|+|||||+++|...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHH
Confidence 5789999999999999999966
No 498
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=80.58 E-value=2.7 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.6
Q ss_pred ceeEEecCccccchHHHHHHHhhc
Q 000665 491 SCRVFFCGQEYAGKTTLCNSISQN 514 (1363)
Q Consensus 491 ~~kl~~vG~~~~GKTSL~~~L~~~ 514 (1363)
...++++|.+|+||||.+..|...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 357899999999999999888755
No 499
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.04 E-value=1.5 Score=30.99 Aligned_cols=23 Identities=4% Similarity=0.164 Sum_probs=13.7
Q ss_pred cceEEEEecCCCCCCHHHHHHHH
Q 000665 384 ETVTQLGIYDDQSLRPDDFVRIF 406 (1363)
Q Consensus 384 ~~L~~L~Ls~N~~i~~~gl~~L~ 406 (1363)
++|++|+|++|..++|.|+..++
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 45666666666556666655554
No 500
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=79.91 E-value=4.1 Score=46.08 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=35.9
Q ss_pred eEEEEEeccCCCCCCchhhHHHHHHHHHHHHHhccccCCCCcEEEEcCCCCCChhHHHHHHHH
Q 000665 629 NVTVVLTHYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRK 691 (1363)
Q Consensus 629 ~VilVgTh~D~~~~~~~~~~~~~~~~~~lr~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~ 691 (1363)
.|+|+.||+|++...+ .. +.-+.+..-..+...-..+++++|+.-..+|+.+-++|.+
T Consensus 181 hiiilQNKiDli~e~~-A~----eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivk 238 (466)
T KOG0466|consen 181 HIIILQNKIDLIKESQ-AL----EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVK 238 (466)
T ss_pred eEEEEechhhhhhHHH-HH----HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHh
Confidence 4999999999975321 11 2223333222232222347899999988999888776654
Done!