Query 000665
Match_columns 1363
No_of_seqs 542 out of 4601
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 17:40:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000665.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_436-440//hhsearch_pdb/000665hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dpu_A RAB family protein; roc 1.0 1 1 422.7 28.7 433 489-1034 39-499 (535)
2 1z7x_W Ribonuclease inhibitor; 1.0 1 1 303.3 37.9 386 73-471 27-425 (461)
3 3dpt_A ROCO, RAB family protei 1.0 1 1 296.9 19.5 277 696-1035 10-297 (332)
4 1z7x_W Ribonuclease inhibitor; 1.0 1 1 280.7 38.7 383 74-473 3-399 (461)
5 2ca6_A RAN GTPase-activating p 1.0 1 1 247.7 28.9 302 110-472 12-333 (386)
6 2ca6_A RAN GTPase-activating p 1.0 1 1 246.1 25.5 303 80-443 10-333 (386)
7 3goz_A Leucine-rich repeat-con 1.0 1 1 232.3 19.2 279 97-407 17-306 (362)
8 3goz_A Leucine-rich repeat-con 1.0 1 1 225.8 22.9 300 107-470 3-310 (362)
9 4eco_A Uncharacterized protein 1.0 1 1 207.1 -7.1 167 98-275 202-390 (636)
10 4ecn_A Leucine-rich repeat pro 1.0 1 1 205.7 1.4 318 100-458 489-821 (876)
No 1
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=1.00 E-value=1 Score=422.65 Aligned_cols=433 Identities=17% Similarity=0.297 Sum_probs=311.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHC-CCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEE------------ECCCEEEE
Q ss_conf 87225886176663267899997300-788987621100122246567668843489997------------34761799
Q 000665 489 PKSCRVFFCGQEYAGKTTLCNSISQN-FSSSKLPYIEQVRTLVNPVEQAVRPVGMKIKTL------------KDEDTRIS 555 (1363)
Q Consensus 489 ~~~~kl~~~G~~~~GKTSL~~~L~~~-~~~~~~~~~~~~~~~~~p~~~~~~T~Gi~i~~~------------~~~~~~l~ 555 (1363)
...+|++++|.+++|||||+++|.+. +..... .|.|+++.+. ....+.+.
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~-----------------~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKES-----------------QTHGLNVVTKQAPNIKGLENDDELKECLFH 101 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC----------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCC-----------------CCCCEEEEEECCCCCCCEEECCCCCEEEEE
T ss_conf 360599999979989999999984489988888-----------------865458897215655420115898269999
Q ss_pred EEECCCCHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEEEEEE
Q ss_conf 99468941234101233334788769999982888889999999355899999999999940412120169980999983
Q 000665 556 IWNLAGQHEFYSLHDLMFPGHGSASCFLIISSLFRKPTNREPKTPEEIEEDLRYWLRFIVSNSRRAVQQCMLPNVTVVLT 635 (1363)
Q Consensus 556 iWDfgGQ~~Y~~th~~Flt~~~~~aiylLV~dl~~k~~~~~~~~~~~~~~~l~~WL~~I~s~~~~av~~~~~p~ViiVgT 635 (1363)
+||++||+.|+.+++.|++ .++++++|||+++ . +.+.+|+..+....++ .|+++|||
T Consensus 102 i~Dt~G~e~~~~~~~~~l~---~~d~ii~V~D~s~---------~----~~~~~~~~~l~~~~~~-------~pvilV~N 158 (535)
T 3dpu_A 102 FWDFGGQEIMHASHQFFMT---RSSVYMLLLDSRT---------D----SNKHYWLRHIEKYGGK-------SPVIVVMN 158 (535)
T ss_dssp EECCCSCCTTTTTCHHHHH---SSEEEEEEECGGG---------G----GGHHHHHHHHHHHSSS-------CCEEEEEC
T ss_pred EEECCCHHHHHHHHHHHCC---CCCEEEEEEECCC---------C----HHHHHHHHHHHHHCCC-------CCEEEEEE
T ss_conf 9979848989999998736---7968999992897---------4----4699999999985899-------97899997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH----HHHHCCCHHHHHHHHH
Q ss_conf 268789985226789999999999714566778939998189999933799999999989----9761684378999999
Q 000665 636 HYDKINQPSQDMQLTVSSIQRLKDKFQGFVDFYPTVFTIDARSSASVTKLTHHIRKTSRT----ILQRVPRVYQLCNDLI 711 (1363)
Q Consensus 636 k~D~~~~~~~~~~~~~~~~~~l~~~f~~~~~i~~~v~~vs~~~~~~i~~L~~~L~~~~~~----i~~~~P~~~~l~~~l~ 711 (1363)
|+|+........ +.++..+... ...++.+||+++.|+++|++.|.+.+.. ....+|..|...++.+
T Consensus 159 K~Dl~~~~~v~~-------~~~~~~~~~~---~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 228 (535)
T 3dpu_A 159 KIDENPSYNIEQ-------KKINERFPAI---ENRFHRISCKNGDGVESIAKSLKSAVLHPDSIYGTPLAPSWIKVKEKL 228 (535)
T ss_dssp CTTTCTTCCCCH-------HHHHHHCGGG---TTCEEECCC-----CTTHHHHHHHHHTCTTSGGGCCBCHHHHHHHHHH
T ss_pred CCCCCCCCCCCH-------HHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHH
T ss_conf 877665432079-------9999987760---784699966766389999999999973353021265864899999999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCC---CEEEECCHHH
Q ss_conf 9988775311899963599999997521899642345676146899999999974741209998688---8799832365
Q 000665 712 QILSDWRSENYNKPAMKWKEFAELCQVKVPPLRIRSRHDNKDKVEMRRRAIATCLHHIGEVIYFDEL---GFLILDCEWF 788 (1363)
Q Consensus 712 ~~l~~~r~~~~~~~~lt~~e~~~l~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~LH~~G~Il~f~~~---d~VvLdP~Wl 788 (1363)
... .. ..++++|+++.++++... +. .++.+..+++|||++|+|+||++. |+|||||+||
T Consensus 229 ~~~---~~---~~~~i~~~~~~~l~~~~~--~~----------~~~~~~~~~~~L~~~G~il~f~d~~l~d~vvL~p~Wl 290 (535)
T 3dpu_A 229 VEA---TT---AQRYLNRTEVEKICNDSG--IT----------DPGERKTLLGYLNNLGIVLYFEALDLSEIYVLDPHWV 290 (535)
T ss_dssp HHH---HH---HSSEECHHHHHHHHHHTT--CC----------CHHHHHHHHHHHHHTTSSBCCTTTCCSSSCEECHHHH
T ss_pred HHH---HC---CCCCCCHHHHHHHHHHCC--CC----------CHHHHHHHHHHHHHCCEEEECCCCCCCCCEEECCHHH
T ss_conf 975---42---587256999999999849--99----------8899999999998771899728987678689871899
Q ss_pred HHHHHHHCCCCHHHHCCCCCCCCCEEHHHHHHHHHHCCCC---CCC-CCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 8875310256213210354578721079799997210113---479-988731134798899999863560687379999
Q 000665 789 CSEVLSKLIKLEVRKQSSLENNGFTSRKELEKILRGSLQS---QIP-GMGSKVFENLEASDLVRMMLKLELCYEQDPSDP 864 (1363)
Q Consensus 789 ~~~v~~~ll~~~~~~~~~~~~~G~l~~~~l~~i~~~~~~~---~~p-~~~~~~~~~~~~~~Ll~LL~~feLc~~~~~~~~ 864 (1363)
+ +++..+++++. .++|+++.++++.+|++.... -.| .+++..++..+.+.|++||++|+|||++++
T Consensus 291 ~-~~v~~ii~~~~------~~~G~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lm~~f~l~~~~~~--- 360 (535)
T 3dpu_A 291 T-IGVYRIINSSK------TKNGHLNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLDIMKQFELCYDEGK--- 360 (535)
T ss_dssp H-HHHHHHHHCTT------STTSEEEGGGHHHHHHTC-------------CCCCCHHHHHHHHHHHHHTTSCEECSS---
T ss_pred H-HHHHHHHCCCC------CCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCC---
T ss_conf 9-99999847767------7785773999999982535443224543322346867779999999997276798599---
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 94388625777889998876579998034335599847999865777112313221025765655531024897033305
Q 000665 865 DSLLLIPSILEEGRGKPQKWQIDSPDCIYAGRHLECDDSSHMFLTPGFFPQFDCLQIQVHLHNRIMALKNQHGATYNLEK 944 (1363)
Q Consensus 865 ~~~yliP~lL~~~~~~~~~w~~~~~~~~~~g~~l~~~~~~~~f~P~G~F~Rli~~~~qv~l~~~~~~~~~~~ga~~~~wk 944 (1363)
.+|+||++||.+++....| ......++..++ .|+|+|||+|| |||+|+.+.. ..+|+
T Consensus 361 -~~~lvP~lL~~~~~~~~~~--~~~~~l~~~~~~-------~~~P~gif~rl-----~vrl~~~~~~--------~~~Wr 417 (535)
T 3dpu_A 361 -GLFIIPSNLPTQIDNEPEI--TEGEPLRFIMKY-------DYLPSTIIPRL-----MIAMQHQILD--------RMQWR 417 (535)
T ss_dssp -SEEECGGGSCSCC-----C--CSSSCEEEEEEE-------SSCCTTHHHHH-----HHHTGGGEEE--------EEEET
T ss_pred -CCEEEEECCCCCCCCCCCC--CCCCCEEEEEEC-------CCCCCCHHHHH-----HHHHHHHHCC--------CCEEC
T ss_conf -9689710378986557788--988717999831-------78981389999-----9998765212--------30324
Q ss_pred CEEEEEECC---EEEEEEECCCCCCEEEEEECCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCCCCCC
Q ss_conf 509999958---7999998375687789973126-664479999999799999840689658888528131203699786
Q 000665 945 YLISIIING---IYIRVELGGQLGYYIDVLACST-KNLTETLRLIHQLIIPAIQSLCQGVTLTENILRPECVRNLTPPRY 1020 (1363)
Q Consensus 945 ~~i~~~~~g---~~v~V~~~~~~~~~id~~~~~~-~~~~~~~~~i~~~i~~~l~~~~pgl~~~~~v~~p~cl~~~~~~~~ 1020 (1363)
+|+++..++ ..++|..... +..|++..+++ .....+|..|++ ++..+.+.+||+.++++|.||+|-.
T Consensus 418 ~g~~~~~~~~~~~~alv~~~~~-~~~i~I~vr~~~~~~~~~l~~i~~-~l~~i~~~~~~l~~~~~vpc~~~~~------- 488 (535)
T 3dpu_A 418 YGMVLKSQDHEGALAKVVAETK-DSTITIAIQGEPRCKREYLSIIWY-EIKKINANFTNLDVKEFIPLPGHPD------- 488 (535)
T ss_dssp TEEEEEEGGGTTEEEEEEEEGG-GTEEEEEEESCHHHHHHHHHHHHH-HHHHHHTTSSSCCEEEEEEETTEEE-------
T ss_pred CCEEEEECCCCCEEEEEEEECC-CCEEEEEEECCCCCHHHHHHHHHH-HHHHHHHHCCCCCEEEEEECCCCCC-------
T ss_conf 6379972687750699997367-787999997787787999999999-9999997574885238976799844-------
Q ss_pred CCCCEEHHHHHHHH
Q ss_conf 55430008999998
Q 000665 1021 RKTQFVHVQLLKQA 1034 (1363)
Q Consensus 1021 ~~~~~~~~~~~k~~ 1034 (1363)
..+..+.|+.+
T Consensus 489 ---~~~~~~~l~~~ 499 (535)
T 3dpu_A 489 ---ELVEYKELLGL 499 (535)
T ss_dssp ---EEEEHHHHHHH
T ss_pred ---CCCCHHHHHHH
T ss_conf ---31119999999
No 2
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=1.00 E-value=1 Score=303.32 Aligned_cols=386 Identities=16% Similarity=0.203 Sum_probs=337.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHH
Q ss_conf 8985399973599999999999999606998219998117999988999999967199-934999415899988999999
Q 000665 73 HTSLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNG-VIKEVMFTESGIKNAGASLLA 151 (1363)
Q Consensus 73 ~~~L~~L~Ls~~~l~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~-~L~~L~Ls~n~I~~~g~~~L~ 151 (1363)
.+.++.|+|++|.+++.++..++.++..+++|+.|+|++|.+++.+...++..+..+. +|++|+|++|.+++.++..++
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 57764998157888777899999999748985778687886774899999998740787631798028978779999999
Q ss_pred HHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCC-HHHHHHHHHHHCCCCEEEECCCCCCCC--
Q ss_conf 984059994589816998993459999999760-9983599916999978-189999999829974099835998954--
Q 000665 152 SALKVNDTLEELQIWEDSIGSKGAEELSKMIEA-NSTLKSLTIFDSSSLT-ATPLISAVLARNRAMEVHVWSGENGEK-- 227 (1363)
Q Consensus 152 ~~L~~~~~L~~L~Ls~N~I~~~g~~~L~~~L~~-~~~L~~L~Ls~n~~~~-~~~~l~~~l~~~~~L~~L~Lsgn~~~~-- 227 (1363)
..+..+++|+.|++++|.+++.+...++..+.. +++|+.|++++|.... +...++..+..+++|++|++++|....
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHH
T ss_conf 99724896459989798576378999999984078821599877998878999999999954999888977688766079
Q ss_pred HHHHHHHCC-CCCCCEEECCC-----CHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHH-CCCCCEEECCCC
Q ss_conf 257872158-89751041359-----11089999774499951599825998996989999999851-898669973699
Q 000665 228 SSKVVEFLP-ENGTLRIYRLD-----VSGSCRVACSLGCNTTVKSLDMTGVRLKSRWAKEFRWVLQQ-NQSLKEVILSKT 300 (1363)
Q Consensus 228 ~~~l~~~l~-~~~~L~~l~Ls-----~~g~~~L~~~L~~~~~L~~LdLs~N~L~~~~~~~L~~~L~~-~~~L~~LdLs~N 300 (1363)
...++..+. ..++|+.++++ ..++..++..+..+++|++|++++|.+++.++..++..+.. +++|+.|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 99999998517998149872399996899999999997089966796458868718999999997167877128987379
Q ss_pred CCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 99938999999998609997799816998897639999966420122223689850099961799889987899999710
Q 000665 301 CLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQML 380 (1363)
Q Consensus 301 ~L~~~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~aL~~~~~~~L~~L~Lsg~~N~i~~~~~~~L~~~L 380 (1363)
.+++.++..++..+..+++|++|++++|.+++.+...++..+. ...++|+.|+++ .|.++..+...++..+
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-------~~~~~L~~L~L~--~n~l~~~~~~~l~~~l 337 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL-------EPGCQLESLWVK--SCSFTAACCSHFSSVL 337 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT-------STTCCCCEEECT--TSCCBGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHC-------CCCCCCEEEECC--CCCCCHHHHHHHHHHH
T ss_conf 7888999999999831898455878898776689999999860-------699620166867--8999667799999998
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCC
Q ss_conf 2486137997269999997889999999962-799568984167787896689999999721998568743588999988
Q 000665 381 TTNETVTQLGIYDDQSLRPDDFVRIFKSLQK-NASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNSG 459 (1363)
Q Consensus 381 ~~~~~L~~L~Ls~N~~l~~~gl~~L~~~L~~-~~~L~~L~Ls~N~~~i~~~~l~~L~~~L~~n~~L~~LdL~~N~l~~~g 459 (1363)
..+++|+.|++++| .+++.+...+...+.. +++|+.|+|++|. +++.++..++..+..+++|+.|++++|++++.|
T Consensus 338 ~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 338 AQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD--VSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp HHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC--CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred HHCCCCCEEECCCC-CCCCCCHHHHHHHHCCCCCCEEEEECCCCC--CCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHH
T ss_conf 52798667981588-566336999999973799861798787789--873669999999984999458989899788799
Q ss_pred CHHHHHHHHHCC
Q ss_conf 667899998214
Q 000665 460 KADGIYQRLGQK 471 (1363)
Q Consensus 460 ~~~~i~~~l~~~ 471 (1363)
...+.+.+.+.
T Consensus 415 -~~~l~~~l~~~ 425 (461)
T 1z7x_W 415 -ILQLVESVRQP 425 (461)
T ss_dssp -HHHHHHHHTST
T ss_pred -HHHHHHHHCCC
T ss_conf -99999986568
No 3
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=1.00 E-value=1 Score=296.94 Aligned_cols=277 Identities=17% Similarity=0.241 Sum_probs=208.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 97616843789999999988775311899963599999997521899642345676146899999999974741209998
Q 000665 696 ILQRVPRVYQLCNDLIQILSDWRSENYNKPAMKWKEFAELCQVKVPPLRIRSRHDNKDKVEMRRRAIATCLHHIGEVIYF 775 (1363)
Q Consensus 696 i~~~~P~~~~l~~~l~~~l~~~r~~~~~~~~lt~~e~~~l~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~LH~~G~Il~f 775 (1363)
+.+.+|.+|..+++.+...+. +.++|||++|.++|+..+ +. .++.+..+++|||++|+|+||
T Consensus 10 mg~~iP~sW~~l~~~L~~~~~------~~~~is~~e~~~i~~~~g--l~----------~~~~~~~~l~~LH~lG~il~f 71 (332)
T 3dpt_A 10 YGTPLAPSWIKVKEKLVEATT------AQRYLNRTEVEKICNDSG--IT----------DPGERKTLLGYLNNLGIVLYF 71 (332)
T ss_dssp -------CHHHHHHHHHHHHH------HSSEECHHHHHHHHHHTT--CC----------CHHHHHHHHHHHHHTTSSEEC
T ss_pred HCCCCCHHHHHHHHHHHHHHC------CCCEECHHHHHHHHHHCC--CC----------CHHHHHHHHHHHHHCCEEEEE
T ss_conf 078457799999999996224------897554999999999839--99----------779999999999977779994
Q ss_pred CCC---CEEEECCHHHHHHHHHHCCCCHHHHCCCCCCCCCEEHHHHHHHHHHCCCCC----CCCCCCCCCCCCCHHHHHH
Q ss_conf 688---879983236588753102562132103545787210797999972101134----7998873113479889999
Q 000665 776 DEL---GFLILDCEWFCSEVLSKLIKLEVRKQSSLENNGFTSRKELEKILRGSLQSQ----IPGMGSKVFENLEASDLVR 848 (1363)
Q Consensus 776 ~~~---d~VvLdP~Wl~~~v~~~ll~~~~~~~~~~~~~G~l~~~~l~~i~~~~~~~~----~p~~~~~~~~~~~~~~Ll~ 848 (1363)
++. |+|||||+||+ +++..+++. ...++|+++.++|+.+|++....+ -+.+++++|+..+.+.|++
T Consensus 72 ~d~~~~d~V~LdP~Wl~-~~v~~il~~------~~~~~G~l~~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 144 (332)
T 3dpt_A 72 EALDLSEIYVLDPHWVT-IGVYRIINS------SKTKNGHLNTSALGYILNEEQIRCDEYDPAKNNKFTYTLLEQRYLLD 144 (332)
T ss_dssp TTTCCSTTCEECHHHHH-HHHHHHHHC------GGGTTSEEESTTHHHHHHTCCCC----------CCCCCHHHHHHHHH
T ss_pred CCCCCCCEEEECHHHHH-HHHHHHHHH------HHHCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 38765673997739999-999999887------64158667799999984621025311243111234585133999999
Q ss_pred HHHHCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98635606873799999438862577788999887657999803433559984799986577711231322102576565
Q 000665 849 MMLKLELCYEQDPSDPDSLLLIPSILEEGRGKPQKWQIDSPDCIYAGRHLECDDSSHMFLTPGFFPQFDCLQIQVHLHNR 928 (1363)
Q Consensus 849 LL~~feLc~~~~~~~~~~~yliP~lL~~~~~~~~~w~~~~~~~~~~g~~l~~~~~~~~f~P~G~F~Rli~~~~qv~l~~~ 928 (1363)
||++|||||++++ ..|+||++||.++|....|.. ...+++. +++ .|+|+|||+|| +||+|++
T Consensus 145 LMekfeLc~~~~~----~~yliP~lL~~~~~~~~~w~~--~~~l~~~--y~~-----~flP~Glf~Rl-----ivrl~~~ 206 (332)
T 3dpt_A 145 IMKQFELCYDEGK----GLFIIPSNLPTQIDNEPEITE--GEPLRFI--MKY-----DYLPSTIIPRL-----MIAMQHQ 206 (332)
T ss_dssp HHHHTTSCEECSS----SEEECGGGSCSCCTTCCCCCS--SSCEEEE--EEE-----SSCCTTHHHHH-----HHHTGGG
T ss_pred HHHHCCCEEECCC----CEEEEECCCCCCCCCCCCCCC--CCCEEEE--EEE-----CCCCHHHHHHH-----HHHHHHH
T ss_conf 9997185475499----719960347778776566788--8747999--984-----56874079999-----9998453
Q ss_pred HHHHCCCCCCCEEEECCEEEEEECC---EEEEEEECCCCCCEEEEEECCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5531024897033305509999958---7999998375687789973126-66447999999979999984068965888
Q 000665 929 IMALKNQHGATYNLEKYLISIIING---IYIRVELGGQLGYYIDVLACST-KNLTETLRLIHQLIIPAIQSLCQGVTLTE 1004 (1363)
Q Consensus 929 ~~~~~~~~ga~~~~wk~~i~~~~~g---~~v~V~~~~~~~~~id~~~~~~-~~~~~~~~~i~~~i~~~l~~~~pgl~~~~ 1004 (1363)
+.. ..+|++|+++..++ ..++|+...+ +..|.+..+++ .+...+|..|++ ++..+.++|||+.+++
T Consensus 207 i~~--------~~~Wr~Gv~l~~~~~~~~~alV~~~~~-~~~I~I~Vrg~~~~~~~lL~~I~~-~l~~l~~~~pgl~~~~ 276 (332)
T 3dpt_A 207 ILD--------RMQWRYGMVLKSQDHEGALAKVVAETK-DSTITIAIQGEPRCKREYLSIIWY-EIKKINANFTNLDVKE 276 (332)
T ss_dssp EEE--------EEEETTEEEEECSSSSSCEEEEEEETT-TTEEEEEEESSHHHHHHHHHHHHH-HHHHHHTTCSSCCEEE
T ss_pred HCC--------HHHHEEEEEEEECCCCCEEEEEEEECC-CCEEEEEEECCCCCHHHHHHHHHH-HHHHHHHHCCCCCCEE
T ss_conf 010--------233322399981687761799998278-988999997688887999999999-9999997488986207
Q ss_pred EEECHHHHCCCCCCCCCCCCEEHHHHHHHHH
Q ss_conf 8528131203699786554300089999984
Q 000665 1005 NILRPECVRNLTPPRYRKTQFVHVQLLKQAL 1035 (1363)
Q Consensus 1005 ~v~~p~cl~~~~~~~~~~~~~~~~~~~k~~~ 1035 (1363)
+|.||+|- . ..++.++|.++.
T Consensus 277 ~VpC~~~~---------~-~~~~~~~L~~~~ 297 (332)
T 3dpt_A 277 FIPLPGHP---------D-ELVEYKELLGLE 297 (332)
T ss_dssp EEEETTEE---------E-EEEEHHHHHHHH
T ss_pred EEECCCCC---------C-CCCCHHHHHHHH
T ss_conf 98789997---------6-642299999899
No 4
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=1.00 E-value=1 Score=280.71 Aligned_cols=383 Identities=15% Similarity=0.183 Sum_probs=188.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 98539997359999999999999960699821999811799998899999996719993499941589998899999998
Q 000665 74 TSLKHLEFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASA 153 (1363)
Q Consensus 74 ~~L~~L~Ls~~~l~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~ 153 (1363)
++++.|+|+++.+++..+.. .+..+++|+.|+|++|.+++.+...++..+..+++|++|+|++|.+++.+...++..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~---~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAE---LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHH---HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred CCCEEHHHHHCCCCCHHHHH---HHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHH
T ss_conf 42000112332468634999---986357764998157888777899999999748985778687886774899999998
Q ss_pred HCCCC-CCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-HHHHHHHHHHH-CCCCEEEECCCCCCCC--H
Q ss_conf 40599-945898169989934599999997609983599916999978-18999999982-9974099835998954--2
Q 000665 154 LKVND-TLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLT-ATPLISAVLAR-NRAMEVHVWSGENGEK--S 228 (1363)
Q Consensus 154 L~~~~-~L~~L~Ls~N~I~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~-~~~~l~~~l~~-~~~L~~L~Lsgn~~~~--~ 228 (1363)
+..+. +|++|++++|.+++.++..++..+..+++|+.|++++|.... +...+...+.. ..+|+.|++++|.... .
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHH
T ss_conf 74078763179802897877999999999724896459989798576378999999984078821599877998878999
Q ss_pred HHHHHHCCCCCCCEEECCCCHH-----HHHHHHHHC-CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCC
Q ss_conf 5787215889751041359110-----899997744-9995159982599899698999999985189866997369999
Q 000665 229 SKVVEFLPENGTLRIYRLDVSG-----SCRVACSLG-CNTTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCL 302 (1363)
Q Consensus 229 ~~l~~~l~~~~~L~~l~Ls~~g-----~~~L~~~L~-~~~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~L~~LdLs~N~L 302 (1363)
..++..+..+++|+.++++.+. ...++..+. ..++|+.|++++|.+++.++..++..+..+++|++|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 99999995499988897768876607999999998517998149872399996899999999997089966796458868
Q ss_pred CHHHHHHHHHHHH-CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf 9389999999986-099977998169988976399999664201222236898500999617998899878999997102
Q 000665 303 KDKGVVYVAAGLF-KNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLT 381 (1363)
Q Consensus 303 ~~~g~~~L~~~L~-~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~aL~~~~~~~L~~L~Lsg~~N~i~~~~~~~L~~~L~ 381 (1363)
++.++..++.++. .+++|+.|++++|.+++.+...++..+ ..+.+|+.|+++ .|.+++.+...+...+.
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--------~~~~~L~~L~Ls--~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL--------RAKESLKELSLA--GNELGDEGARLLCETLL 309 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--------HHCTTCCEEECT--TCCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHH--------HHCCCCCEEECC--CCCCCHHHHHHHHHHHC
T ss_conf 71899999999716787712898737978889999999998--------318984558788--98776689999999860
Q ss_pred CC-CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCEEECCCCCCCCCC
Q ss_conf 48-6137997269999997889999999962799568984167787896689999999721-998568743588999988
Q 000665 382 TN-ETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQV-NPWIEDIDLERTPLKNSG 459 (1363)
Q Consensus 382 ~~-~~L~~L~Ls~N~~l~~~gl~~L~~~L~~~~~L~~L~Ls~N~~~i~~~~l~~L~~~L~~-n~~L~~LdL~~N~l~~~g 459 (1363)
.+ ++|+.|++++| .+++.+...++..+..+++|+.|+|++|. +++.+...+...+.. +++|+.|++++|.+++.|
T Consensus 310 ~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 310 EPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR--LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp STTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred CCCCCCEEEECCCC-CCCHHHHHHHHHHHHHCCCCCEEECCCCC--CCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHH
T ss_conf 69962016686789-99667799999998527986679815885--6633699999997379986179878778987366
Q ss_pred CHHHHHHHHHCCCC
Q ss_conf 66789999821499
Q 000665 460 KADGIYQRLGQKGR 473 (1363)
Q Consensus 460 ~~~~i~~~l~~~~~ 473 (1363)
+..+...+..+.+
T Consensus 387 -~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 387 -CSSLAATLLANHS 399 (461)
T ss_dssp -HHHHHHHHHHCCC
T ss_pred -HHHHHHHHHHCCC
T ss_conf -9999999984999
No 5
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=1.00 E-value=1 Score=247.66 Aligned_cols=302 Identities=17% Similarity=0.205 Sum_probs=184.0
Q ss_pred ECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCC------HHHHHHHHHHHH
Q ss_conf 11799998899999996719993499941589998899999998405999458981699899------345999999976
Q 000665 110 RRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVNDTLEELQIWEDSIG------SKGAEELSKMIE 183 (1363)
Q Consensus 110 s~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~~L~~L~Ls~N~I~------~~g~~~L~~~L~ 183 (1363)
..+.+++.++..++..+..+++|+.|+|++|.++..+...++..+..+++|+.|+|++|.++ +.+...++..+.
T Consensus 12 ~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~ 91 (386)
T 2ca6_A 12 KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91 (386)
T ss_dssp EESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 46878988899999998368995379787997889999999999974799668867312247642101699999999996
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 09983599916999978189999999829974099835998954257872158897510413591108999977449995
Q 000665 184 ANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCNTT 263 (1363)
Q Consensus 184 ~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Lsgn~~~~~~~l~~~l~~~~~L~~l~Ls~~g~~~L~~~L~~~~~ 263 (1363)
.+++|+.|+|++|. ++..+...++..+..+++
T Consensus 92 ~~~~L~~L~Ls~n~------------------------------------------------l~~~~~~~l~~~l~~~~~ 123 (386)
T 2ca6_A 92 KCPKLHTVRLSDNA------------------------------------------------FGPTAQEPLIDFLSKHTP 123 (386)
T ss_dssp TCTTCCEEECCSCC------------------------------------------------CCTTTHHHHHHHHHHCTT
T ss_pred HCCCCCEEECCCCC------------------------------------------------CCHHHHHHHHHHHHHCCC
T ss_conf 48961579897886------------------------------------------------788999999999985899
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHC---------CCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHH
Q ss_conf 15998259989969899999998518---------986699736999993899999999860999779981699889763
Q 000665 264 VKSLDMTGVRLKSRWAKEFRWVLQQN---------QSLKEVILSKTCLKDKGVVYVAAGLFKNRSLESLYLHGNWFSGVG 334 (1363)
Q Consensus 264 L~~LdLs~N~L~~~~~~~L~~~L~~~---------~~L~~LdLs~N~L~~~g~~~L~~~L~~~~~L~~LdLs~N~l~~~g 334 (1363)
|+.|+|++|.+++.+...++..+..+ ++|+.|++++|.+++.++..++..+..+++|++|++++|.+++.+
T Consensus 124 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g 203 (386)
T 2ca6_A 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHH
T ss_conf 78897869999889999999999987650200248987689898999985799999999983899588979699888769
Q ss_pred HHHHHH-HHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH--
Q ss_conf 999996-64201222236898500999617998899878999997102486137997269999997889999999962--
Q 000665 335 VEHLLC-PLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRIFKSLQK-- 411 (1363)
Q Consensus 335 ~~~L~~-~L~~~~aL~~~~~~~L~~L~Lsg~~N~i~~~~~~~L~~~L~~~~~L~~L~Ls~N~~l~~~gl~~L~~~L~~-- 411 (1363)
+..++. .+ ..+++|+.|+|+ .|.+++.++..++..+..+++|+.|+|++| .+++.+...++..+..
T Consensus 204 ~~~l~~~~l--------~~~~~L~~L~Ls--~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 204 IEHLLLEGL--------AYCQELKVLDLQ--DNTFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp HHHHHHTTG--------GGCTTCCEEECC--SSCCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHH--------HCCCCCCEEECC--CCCCCCHHHHHHHHHHCCCCCCCEEECCCC-CCCHHHHHHHHHHHHHCC
T ss_conf 999999985--------259986379796--898973899999999703998678979999-785336999999984265
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCEEECCCCCCCCCCC-HHHHHHHHHCCC
Q ss_conf 799568984167787896689999999721-9985687435889999886-678999982149
Q 000665 412 NASLRQLSLQGCKGVRGELVQQAIMETLQV-NPWIEDIDLERTPLKNSGK-ADGIYQRLGQKG 472 (1363)
Q Consensus 412 ~~~L~~L~Ls~N~~~i~~~~l~~L~~~L~~-n~~L~~LdL~~N~l~~~g~-~~~i~~~l~~~~ 472 (1363)
+++|+.|+|++|. +++.++..++..+.. +++|+.|++++|++...+. ...+...+.+..
T Consensus 273 ~~~L~~L~L~~n~--i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 273 NIGLQTLRLQYNE--IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp SCCCCEEECCSSC--CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCC--CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 8874799775776--887999999999983589755998237867862458999999853148
No 6
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=1.00 E-value=1 Score=246.06 Aligned_cols=303 Identities=18% Similarity=0.222 Sum_probs=236.7
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC------HHHHHHHHHH
Q ss_conf 9735999999999999996069982199981179999889999999671999349994158999------8899999998
Q 000665 80 EFHSVEWEIEQMRILGLLLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIK------NAGASLLASA 153 (1363)
Q Consensus 80 ~Ls~~~l~~~~~~~L~~~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~------~~g~~~L~~~ 153 (1363)
.+..+.+++.++..+...+..+++|+.|+|++|.++..+...++..+..+++|+.|+|++|.+. +.++..++.+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 31468789888999999983689953797879978899999999999747996688673122476421016999999999
Q ss_pred HCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 40599945898169989934599999997609983599916999978189999999829974099835998954257872
Q 000665 154 LKVNDTLEELQIWEDSIGSKGAEELSKMIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVE 233 (1363)
Q Consensus 154 L~~~~~L~~L~Ls~N~I~~~g~~~L~~~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Lsgn~~~~~~~l~~ 233 (1363)
+..+++|+.|+|++|.+++.++..++..+..+++|+.|+|++|.+.
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~---------------------------------- 135 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---------------------------------- 135 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH----------------------------------
T ss_pred HHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCC----------------------------------
T ss_conf 9648961579897886788999999999985899788978699998----------------------------------
Q ss_pred HCCCCCCCEEECCCCHHHHHHHHHHCCC---------CCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCH
Q ss_conf 1588975104135911089999774499---------9515998259989969899999998518986699736999993
Q 000665 234 FLPENGTLRIYRLDVSGSCRVACSLGCN---------TTVKSLDMTGVRLKSRWAKEFRWVLQQNQSLKEVILSKTCLKD 304 (1363)
Q Consensus 234 ~l~~~~~L~~l~Ls~~g~~~L~~~L~~~---------~~L~~LdLs~N~L~~~~~~~L~~~L~~~~~L~~LdLs~N~L~~ 304 (1363)
..+...++..+..+ ++|++|++++|.+++.++..++..+..+++|+.|++++|.+++
T Consensus 136 --------------~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 201 (386)
T 2ca6_A 136 --------------PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201 (386)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCH
T ss_conf --------------899999999999876502002489876898989999857999999999838995889796998887
Q ss_pred HHHHHHHH-HHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCC-
Q ss_conf 89999999-9860999779981699889763999996642012222368985009996179988998789999971024-
Q 000665 305 KGVVYVAA-GLFKNRSLESLYLHGNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLTT- 382 (1363)
Q Consensus 305 ~g~~~L~~-~L~~~~~L~~LdLs~N~l~~~g~~~L~~~L~~~~aL~~~~~~~L~~L~Lsg~~N~i~~~~~~~L~~~L~~- 382 (1363)
.|+..++. .+..+++|+.|+|++|.+++.|...++..+ ..+++|+.|+|+ +|.+++.+...++..+..
T Consensus 202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l--------~~~~~L~~L~L~--~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL--------KSWPNLRELGLN--DCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG--------GGCTTCCEEECT--TCCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHH--------CCCCCCCEEECC--CCCCCHHHHHHHHHHHHHC
T ss_conf 699999999852599863797968989738999999997--------039986789799--9978533699999998426
Q ss_pred -CCCEEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCHHH--HHHHHHHHHCCC
Q ss_conf -86137997269999997889999999962-79956898416778789668--999999972199
Q 000665 383 -NETVTQLGIYDDQSLRPDDFVRIFKSLQK-NASLRQLSLQGCKGVRGELV--QQAIMETLQVNP 443 (1363)
Q Consensus 383 -~~~L~~L~Ls~N~~l~~~gl~~L~~~L~~-~~~L~~L~Ls~N~~~i~~~~--l~~L~~~L~~n~ 443 (1363)
+++|+.|+|++| .+++.|+..++..+.. +++|+.|+|++|. +++.+ +..+...+..+.
T Consensus 272 ~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~--l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 272 ENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR--FSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp SSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB--SCTTSHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCC-CCCHHHHHHHHHHHHHCCCCCEEEECCCCC--CCCCHHHHHHHHHHHHHCC
T ss_conf 5887479977577-688799999999998358975599823786--7862458999999853148
No 7
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=1.00 E-value=1 Score=232.29 Aligned_cols=279 Identities=15% Similarity=0.144 Sum_probs=127.0
Q ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHCCC-CCCCEEECCCCCCCHHH
Q ss_conf 9606998219998117999988999999967199-934999415899988999999984059-99458981699899345
Q 000665 97 LLDCSSNVKQVVFRRNKFDAECLAEISDVVRRNG-VIKEVMFTESGIKNAGASLLASALKVN-DTLEELQIWEDSIGSKG 174 (1363)
Q Consensus 97 ~L~~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~-~L~~L~Ls~n~I~~~g~~~L~~~L~~~-~~L~~L~Ls~N~I~~~g 174 (1363)
.+...++|+.|+|++|.+++.+...++..+..++ +|++|+|++|.+++.+...+...+..+ ++|+.|+|++|.+++.+
T Consensus 17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHH
T ss_conf 97388875199763898880789999999972888655998749977788999999998606898638989688687289
Q ss_pred HHHHHHHHHCC-CCEEEEECCCCCCC-CHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCHHH
Q ss_conf 99999997609-98359991699997-818999999982-9974099835998954257872158897510413591108
Q 000665 175 AEELSKMIEAN-STLKSLTIFDSSSL-TATPLISAVLAR-NRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGS 251 (1363)
Q Consensus 175 ~~~L~~~L~~~-~~L~~L~Ls~n~~~-~~~~~l~~~l~~-~~~L~~L~Lsgn~~~~~~~l~~~l~~~~~L~~l~Ls~~g~ 251 (1363)
...++..+..+ ++|+.|++++|.+. .+...+...+.. +.+|++|++++| .+++.+.
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N---------------------~l~~~~~ 155 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN---------------------DLGIKSS 155 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS---------------------CGGGSCH
T ss_pred HHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC---------------------CCCHHHH
T ss_conf 9999999984777764898959968707899999999847995349976188---------------------4987999
Q ss_pred HHHHHHHCCCC-CCCEEECCCCCCCHHHHHHHHHHHHHC-CCCCEEECCCCCCCHHHHHHHHHHHHC-CCCCCEEECCCC
Q ss_conf 99997744999-515998259989969899999998518-986699736999993899999999860-999779981699
Q 000665 252 CRVACSLGCNT-TVKSLDMTGVRLKSRWAKEFRWVLQQN-QSLKEVILSKTCLKDKGVVYVAAGLFK-NRSLESLYLHGN 328 (1363)
Q Consensus 252 ~~L~~~L~~~~-~L~~LdLs~N~L~~~~~~~L~~~L~~~-~~L~~LdLs~N~L~~~g~~~L~~~L~~-~~~L~~LdLs~N 328 (1363)
..++..+.... +|++|+|++|.+++.+...++..+..+ ++|+.|+|++|.+++.++..++.++.. +++|+.|++++|
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 99999986277665476522788851569999999985778787898979989766799999998328998539977289
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCC---CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHH
Q ss_conf 889763999996642012222368985009996179988---99878999997102486137997269999997889999
Q 000665 329 WFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTK---IGRDGIAAILQMLTTNETVTQLGIYDDQSLRPDDFVRI 405 (1363)
Q Consensus 329 ~l~~~g~~~L~~~L~~~~aL~~~~~~~L~~L~Lsg~~N~---i~~~~~~~L~~~L~~~~~L~~L~Ls~N~~l~~~gl~~L 405 (1363)
.+++.+...+...+ ..+.+|+.|+++ .|. ++..+...+...+..+++|+.|++++| .+++.+...+
T Consensus 236 ~l~~~~~~~l~~~~--------~~l~~L~~L~L~--~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~~~~~~ 304 (362)
T 3goz_A 236 CLHGPSLENLKLLK--------DSLKHLQTVYLD--YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPSHSIPI 304 (362)
T ss_dssp CCCCCCHHHHHHTT--------TTTTTCSEEEEE--HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGGGCHHH
T ss_pred CCCCHHHHHHHHHH--------HCCCCCCEEEEC--CCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCC-CCCCCCHHHH
T ss_conf 89817899999997--------337885589801--587656698999999997403784489966898-6788423888
Q ss_pred HH
Q ss_conf 99
Q 000665 406 FK 407 (1363)
Q Consensus 406 ~~ 407 (1363)
..
T Consensus 305 ~~ 306 (362)
T 3goz_A 305 SN 306 (362)
T ss_dssp HH
T ss_pred HH
T ss_conf 89
No 8
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=1.00 E-value=1 Score=225.80 Aligned_cols=300 Identities=15% Similarity=0.122 Sum_probs=220.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCC-CCCEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf 9981179999889999999671999349994158999889999999840599-945898169989934599999997609
Q 000665 107 VVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESGIKNAGASLLASALKVND-TLEELQIWEDSIGSKGAEELSKMIEAN 185 (1363)
Q Consensus 107 L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~-~L~~L~Ls~N~I~~~g~~~L~~~L~~~ 185 (1363)
+.++.|.++.. +...+...++|++|+|++|.+++.+...++.++...+ +|++|+|++|.+++.+...++..+..+
T Consensus 3 ~~ls~n~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNP----VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCH----HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred CCCCCCCCHHH----HHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 00356664689----99997388875199763898880789999999972888655998749977788999999998606
Q ss_pred -CCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHCCC-CC
Q ss_conf -9835999169999781899999998299740998359989542578721588975104135911089999774499-95
Q 000665 186 -STLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGTLRIYRLDVSGSCRVACSLGCN-TT 263 (1363)
Q Consensus 186 -~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Lsgn~~~~~~~l~~~l~~~~~L~~l~Ls~~g~~~L~~~L~~~-~~ 263 (1363)
++|+.|++++|. ++..+...+...+... ++
T Consensus 79 ~~~L~~L~Ls~n~------------------------------------------------l~~~~~~~l~~~l~~~~~~ 110 (362)
T 3goz_A 79 PANVTSLNLSGNF------------------------------------------------LSYKSSDELVKTLAAIPFT 110 (362)
T ss_dssp CTTCCEEECCSSC------------------------------------------------GGGSCHHHHHHHHHTSCTT
T ss_pred CCCCCEEECCCCC------------------------------------------------CCHHHHHHHHHHHHHCCCC
T ss_conf 8986389896886------------------------------------------------8728999999999847777
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHH-CCCCCEEECCCCCCCHHHHHHHHHHHHCCC-CCCEEECCCCCCCHHHHHHHHHH
Q ss_conf 1599825998996989999999851-898669973699999389999999986099-97799816998897639999966
Q 000665 264 VKSLDMTGVRLKSRWAKEFRWVLQQ-NQSLKEVILSKTCLKDKGVVYVAAGLFKNR-SLESLYLHGNWFSGVGVEHLLCP 341 (1363)
Q Consensus 264 L~~LdLs~N~L~~~~~~~L~~~L~~-~~~L~~LdLs~N~L~~~g~~~L~~~L~~~~-~L~~LdLs~N~l~~~g~~~L~~~ 341 (1363)
|+.|+|++|.+++.+...++..+.. +++|++|+|++|.+++.++..++.++...+ +|++|++++|.+++.+...++..
T Consensus 111 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 190 (362)
T 3goz_A 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF 190 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 64898959968707899999999847995349976188498799999999986277665476522788851569999999
Q ss_pred HHHCCCCCCCCC-CCEEEEEEECCCCCCCHHHHHHHHHCCCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 420122223689-85009996179988998789999971024-8613799726999999788999999996279956898
Q 000665 342 LSRFSSLQSQAN-ITLRSVTFGGGRTKIGRDGIAAILQMLTT-NETVTQLGIYDDQSLRPDDFVRIFKSLQKNASLRQLS 419 (1363)
Q Consensus 342 L~~~~aL~~~~~-~~L~~L~Lsg~~N~i~~~~~~~L~~~L~~-~~~L~~L~Ls~N~~l~~~gl~~L~~~L~~~~~L~~L~ 419 (1363)
+ ..+ ++|+.|+|+ .|.+++.++..++..+.. +++|+.|+|++| .+++.+...+...+..+++|+.|+
T Consensus 191 l--------~~~~~~L~~L~Ls--~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 191 L--------ASIPASVTSLDLS--ANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp H--------HTSCTTCCEEECT--TSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred H--------HHCCCCCCEEECC--CCCCCHHHHHHHHHHHHCCCCCCEEEECCCC-CCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 9--------8577878789897--9989766799999998328998539977289-898178999999973378855898
Q ss_pred EECCC-CCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHC
Q ss_conf 41677-8789668999999972199856874358899998866789999821
Q 000665 420 LQGCK-GVRGELVQQAIMETLQVNPWIEDIDLERTPLKNSGKADGIYQRLGQ 470 (1363)
Q Consensus 420 Ls~N~-~~i~~~~l~~L~~~L~~n~~L~~LdL~~N~l~~~g~~~~i~~~l~~ 470 (1363)
|++|. ..+++.++..+...+..+++|+.||+++|++.+.+ ...+...+..
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~-~~~~~~~l~~ 310 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH-SIPISNLIRE 310 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG-CHHHHHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-HHHHHHHHHH
T ss_conf 01587656698999999997403784489966898678842-3888899997
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=207.10 Aligned_cols=167 Identities=12% Similarity=0.085 Sum_probs=75.2
Q ss_pred HHCCCCCCEEEEECCCCCHH-------------HHHHHHHHHH--CCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 60699821999811799998-------------8999999967--19993499941589998899999998405999458
Q 000665 98 LDCSSNVKQVVFRRNKFDAE-------------CLAEISDVVR--RNGVIKEVMFTESGIKNAGASLLASALKVNDTLEE 162 (1363)
Q Consensus 98 L~~~~~L~~L~Ls~N~i~~~-------------~~~~l~~~L~--~~~~L~~L~Ls~n~I~~~g~~~L~~~L~~~~~L~~ 162 (1363)
+...++|+.|+|++|.++.. ....+...+. .+++|+.|+|++|.+.. .++..+...++|+.
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQL 277 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCE
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCC----CCHHHHHCCCCCCE
T ss_conf 72564787898868823664232212222210010248632200446878889804885776----28388834999788
Q ss_pred EECCCCC-CCH-HHHHHHHHH--HHCCCCEEEEECCCCCCCCHHHHHHH--HHHHCCCCEEEECCCCCCCCHHHHHHHCC
Q ss_conf 9816998-993-459999999--76099835999169999781899999--99829974099835998954257872158
Q 000665 163 LQIWEDS-IGS-KGAEELSKM--IEANSTLKSLTIFDSSSLTATPLISA--VLARNRAMEVHVWSGENGEKSSKVVEFLP 236 (1363)
Q Consensus 163 L~Ls~N~-I~~-~g~~~L~~~--L~~~~~L~~L~Ls~n~~~~~~~~l~~--~l~~~~~L~~L~Lsgn~~~~~~~l~~~l~ 236 (1363)
|++++|. ++. .-...+... +...++|+.|++++|.... ++. .+...++|+.|++++|...+. +. .+.
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~----ip~~~~l~~l~~L~~L~L~~N~l~g~--ip-~~~ 350 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT----FPVETSLQKMKKLGMLECLYNQLEGK--LP-AFG 350 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS----CCCHHHHTTCTTCCEEECCSCCCEEE--CC-CCE
T ss_pred EECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCC----CCCHHHHCCCCCCCEEECCCCCCCCC--HH-HHC
T ss_conf 978479887665335788754304657888889897993776----67655542578889896908807051--66-647
Q ss_pred CCCCCEEECCCCHHHHHHHHHHCCCCC-CCEEECCCCCCC
Q ss_conf 897510413591108999977449995-159982599899
Q 000665 237 ENGTLRIYRLDVSGSCRVACSLGCNTT-VKSLDMTGVRLK 275 (1363)
Q Consensus 237 ~~~~L~~l~Ls~~g~~~L~~~L~~~~~-L~~LdLs~N~L~ 275 (1363)
...+|+.++++.+.+..++..+...++ |+.|++++|.++
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCC
T ss_conf 8898898989899403033756510236868985298275
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=205.74 Aligned_cols=318 Identities=8% Similarity=0.080 Sum_probs=130.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCC-CCH-HH---HHHHHHHHCCCCCCCEEECCCCCCCHHH
Q ss_conf 699821999811799998899999996719993499941589-998-89---9999998405999458981699899345
Q 000665 100 CSSNVKQVVFRRNKFDAECLAEISDVVRRNGVIKEVMFTESG-IKN-AG---ASLLASALKVNDTLEELQIWEDSIGSKG 174 (1363)
Q Consensus 100 ~~~~L~~L~Ls~N~i~~~~~~~l~~~L~~~~~L~~L~Ls~n~-I~~-~g---~~~L~~~L~~~~~L~~L~Ls~N~I~~~g 174 (1363)
.+++|+.|+|++|.+... +...+..+++|+.|+|++|. ++. .- +..+...+...++|+.|+|++|.+..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-- 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQ----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-- 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCS----CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB--
T ss_pred CCCCCCEEECCCCCCCCC----CHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCC--
T ss_conf 599977898718988752----73877379998999896898765664617787523301556883199822894776--
Q ss_pred HHHHHH--HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCC-CEEECCCCHHH
Q ss_conf 999999--976099835999169999781899999998299740998359989542578721588975-10413591108
Q 000665 175 AEELSK--MIEANSTLKSLTIFDSSSLTATPLISAVLARNRAMEVHVWSGENGEKSSKVVEFLPENGT-LRIYRLDVSGS 251 (1363)
Q Consensus 175 ~~~L~~--~L~~~~~L~~L~Ls~n~~~~~~~~l~~~l~~~~~L~~L~Lsgn~~~~~~~l~~~l~~~~~-L~~l~Ls~~g~ 251 (1363)
++. .+...++|+.|+|++|.+. . ++ .+...++|+.|++++|... .++..+....+ |+.++++.+.+
T Consensus 563 ---ip~~~~l~~L~~L~~L~Ls~N~l~-~---lp-~~~~L~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 563 ---FPASASLQKMVKLGLLDCVHNKVR-H---LE-AFGTNVKLTDLKLDYNQIE---EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp ---CCCHHHHTTCTTCCEEECTTSCCC-B---CC-CCCTTSEESEEECCSSCCS---CCCTTSCEECTTCCEEECCSSCC
T ss_pred ---CCCHHHHHCCCCCCEEECCCCCCC-C---CH-HHCCCCCCEEEECCCCCCC---CCHHHHHHCCCCCCEEECCCCCC
T ss_conf ---187235515898898989799825-6---21-2247985007987187125---03587752511498999849978
Q ss_pred HHHHHHHCCCC--CCCEEECCCCCCCHHHHHHHHHHHH--HCCCCCEEECCCCCCCHHHHHHHHHHH-HCCCCCCEEECC
Q ss_conf 99997744999--5159982599899698999999985--189866997369999938999999998-609997799816
Q 000665 252 CRVACSLGCNT--TVKSLDMTGVRLKSRWAKEFRWVLQ--QNQSLKEVILSKTCLKDKGVVYVAAGL-FKNRSLESLYLH 326 (1363)
Q Consensus 252 ~~L~~~L~~~~--~L~~LdLs~N~L~~~~~~~L~~~L~--~~~~L~~LdLs~N~L~~~g~~~L~~~L-~~~~~L~~LdLs 326 (1363)
..++..+.... +|+.|+|++|.++.... .+...+. ...+|+.|+|++|.++. ++..+ ..+++|+.|+|+
T Consensus 632 ~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGSPISTIILS 705 (876)
T ss_dssp CSCCSCCCTTCSSCEEEEECCSSCTTTTSS-SCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECC
T ss_pred CCCCHHHHCCCCCCCCEEECCCCCCCCCCC-CCHHHHCCCCCCCCCEEECCCCCCCC-----CCHHHHCCCCCCCEEECC
T ss_conf 747644522556777889770884788643-20000001357976889831996886-----597887138988999898
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCC--CCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 9988976399999664201222236898500999617998899878999997102--48613799726999999788999
Q 000665 327 GNWFSGVGVEHLLCPLSRFSSLQSQANITLRSVTFGGGRTKIGRDGIAAILQMLT--TNETVTQLGIYDDQSLRPDDFVR 404 (1363)
Q Consensus 327 ~N~l~~~g~~~L~~~L~~~~aL~~~~~~~L~~L~Lsg~~N~i~~~~~~~L~~~L~--~~~~L~~L~Ls~N~~l~~~gl~~ 404 (1363)
+|.++..+...+.... -.+....+|+.|+|+ .|.++. ++..+. ..++|+.|+|++| .+..
T Consensus 706 ~N~L~~ip~~~~~~~~-----~~l~nl~~L~~L~Ls--~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N-~L~~----- 767 (876)
T 4ecn_A 706 NNLMTSIPENSLKPKD-----GNYKNTYLLTTIDLR--FNKLTS-----LSDDFRATTLPYLSNMDVSYN-CFSS----- 767 (876)
T ss_dssp SCCCSCCCTTSSSCTT-----SCCTTGGGCCEEECC--SSCCCC-----CCGGGSTTTCTTCCEEECCSS-CCSS-----
T ss_pred CCCCCCCCHHHHCCCC-----CCCCCCCCCCEEECC--CCCCCC-----CHHHHHHCCCCCCCEEEECCC-CCCC-----
T ss_conf 9968854967845553-----343214871589888--997866-----527762442798698990899-7876-----
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
Q ss_conf 999996279956898416778789668999999972199856874358899998
Q 000665 405 IFKSLQKNASLRQLSLQGCKGVRGELVQQAIMETLQVNPWIEDIDLERTPLKNS 458 (1363)
Q Consensus 405 L~~~L~~~~~L~~L~Ls~N~~~i~~~~l~~L~~~L~~n~~L~~LdL~~N~l~~~ 458 (1363)
++..+..+++|+.|+|++|....+......++..+..++.|+.|+|++|.++..
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I 821 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 105661599988998879977665632444868883699878898879978740
Done!