BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000667
(1363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3B7T1|EDRF1_HUMAN Erythroid differentiation-related factor 1 OS=Homo sapiens GN=EDRF1
PE=1 SV=1
Length = 1238
Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 182/347 (52%), Gaps = 51/347 (14%)
Query: 31 GDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVLNYGADVEE------------- 77
G+D+DV+S ++ +K++ KIPYSK+ +S++VHR+G+TL+L+ D++E
Sbjct: 118 GNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLD-ELDIQELFMRSSQTGDWTW 176
Query: 78 ---------GEKLIRRHGNQSKCADQSLFLNFAMHSVRMEACDCPPTHQSPSERQANSSV 128
+K R+ ++ +++ F +S+ + P + S +E+Q +SS
Sbjct: 177 LKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVS--STAEQQESSSS 234
Query: 129 LPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSRKNKRNKNHDPVKKASHVGE 188
QT D F V +D S ++ ++ +P HV
Sbjct: 235 ----------DQTNDSEGASWPAPFEMPSSVSEDPSA----SSQGSEPLEPSYIVGHVAS 280
Query: 189 KPR-----CSIQESEKHRRVGNDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLW 243
P+ + E + + ND F+R + W F + ML+GS++ +F +Y AVSL L
Sbjct: 281 APKEQNLITLFNDGEHSQGLKND-FVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLR 339
Query: 244 DVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPA 303
D + + LT ++ WLDN++ +VPEL +C+H NG+VQ YE++KT++I L+ +
Sbjct: 340 DNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSN------ 393
Query: 304 FHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVI 350
F V++ ++L FL+ NC ++ YWL+K++G D+++L+DL+ +
Sbjct: 394 FSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTL 440
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 22/125 (17%)
Query: 946 DAENNLSSALSCYEEAVKAL--GGLPTVSAE-LQSVLKKKGWVCNEMGRI---------- 992
D E+ LS + CYE A + L L + + E VLK+ G + NE+G
Sbjct: 801 DLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQS 860
Query: 993 -RLERKEMEKGEH--------AFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSK 1043
RL K + E F I+ F+ + D TN L+ CN G R A+
Sbjct: 861 ERLVSKSVSAAEQQLWKKSFSCFEKGIHNFESIEDATNAALLLCNTGRLMRICAQAHCGA 920
Query: 1044 VESLK 1048
+ LK
Sbjct: 921 GDELK 925
>sp|Q6GQV7|EDRF1_MOUSE Erythroid differentiation-related factor 1 OS=Mus musculus GN=Edrf1
PE=2 SV=1
Length = 1239
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/460 (24%), Positives = 216/460 (46%), Gaps = 95/460 (20%)
Query: 31 GDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVLNYGADVEE------------- 77
G+D+DV+S ++ +K++ KIPYSK+ +S++VHR+G+TL+L+ D++E
Sbjct: 118 GNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLD-ELDIQELFMRSSQTGDWTW 176
Query: 78 ---------GEKLIRRHGNQSKCADQSLFLNFAMHSVRMEACDCP--------------P 114
+K R+ ++ +++ F +S+ + P
Sbjct: 177 LKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVPSPAEQEESSSSQQ 236
Query: 115 THQS-----PSERQANSSVLPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSR 169
TH+S P+ + SSV D S E + GH + PK Q +++++
Sbjct: 237 THESEGAAWPAPFEMPSSV--SEDPSASSQGREPLEPSCIVGHVASAPKEQNLTTLFNDG 294
Query: 170 KNKRNKNHDPVKKASHVGEKPRCSIQESEKHRRVGNDGFLRVLFWQFHNFRMLLGSDLLL 229
+N + +D F+R + W F + ML+GS++ +
Sbjct: 295 ENSQGLKND-----------------------------FVRNILWTFEDIHMLVGSNMPI 325
Query: 230 FSNEKYVAVSLHLWDVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDD 289
F +Y AVSL L D + + LT ++ WLDN++ +VPEL +C+H NG+VQ YE++KT++
Sbjct: 326 FGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEE 385
Query: 290 IFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSV 349
I L+ + F V++ ++L FL+ NC ++ YWL+K++G D+++L+DL+
Sbjct: 386 IPNLENSN------FSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTT 439
Query: 350 IPKNHSSSACDDSTSSLPQIHRGRSDSLFSLGTLLYRIAHRLSLSMASDNR--AKCARFI 407
+ C+++ + ++ + LLY++A + + + + +
Sbjct: 440 L--------CEETED------KYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLL 485
Query: 408 KKCLDFLDEPDHLVMRAFAHEQFARLILNYEEDLELTSES 447
C+ LD+ H + A A+ + L E E +S+S
Sbjct: 486 LNCVKLLDKSRHPQIIASANYMLSELFQLDEPKKEESSDS 525
Score = 37.4 bits (85), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 22/115 (19%)
Query: 946 DAENNLSSALSCYEEAVKAL--GGLPTVSAE-LQSVLKKKGWVCNEMGRIRLERKEMEKG 1002
D E+ LS + CYE A + L L + + E VLK+ G + NE+G + + +G
Sbjct: 801 DLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQG 860
Query: 1003 EHA-------------------FANAINAFKEVSDYTNIILINCNLGHGRRALAE 1038
E F I+ F+ + D TN L+ CN G R A+
Sbjct: 861 ERVVSKSVSAAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRLMRVCAQ 915
>sp|Q5R9R1|EDRF1_PONAB Erythroid differentiation-related factor 1 OS=Pongo abelii GN=EDRF1
PE=2 SV=1
Length = 1204
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 177/342 (51%), Gaps = 75/342 (21%)
Query: 31 GDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVLNYGADVEE------------- 77
G+D+DV+S ++ +K++ KIPYSK+ +S++VHR+G+TL+L+ D++E
Sbjct: 118 GNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLLD-ELDIQELFMRSSQTGDWTW 176
Query: 78 ---------GEKLIRRHGNQSKCADQSLFLNFAMHSVRMEACDCPPTHQSPSERQANSSV 128
+K R+ ++ +++ F +S+ + P + S +E+Q +SS
Sbjct: 177 LKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVS--STTEQQESSSS 234
Query: 129 LPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSRKNKRNKNHDPVKKASHVGE 188
QT D EG+ W + P + S V E
Sbjct: 235 ----------DQTND---SEGAS--------------WPA----------PFEMPSSVSE 257
Query: 189 KPRCSIQESEKHRRVGNDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLWDVARQ 248
P S Q + ND F+R + W F + ML+GS++ +F +Y AVSL L D +
Sbjct: 258 DPSASSQ------GLKND-FVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKP 310
Query: 249 VTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHV 308
+ LT ++ WLDN++ +VPEL +C+H NG+VQ YE++KT++I L+ + F V
Sbjct: 311 INVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSN------FSTKV 364
Query: 309 VQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVI 350
++ ++L FL+ NC ++ YWL+K++G D+++L+DL+ +
Sbjct: 365 IKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTL 406
>sp|Q89QJ5|GLNE_BRAJA Glutamate-ammonia-ligase adenylyltransferase OS=Bradyrhizobium
japonicum (strain USDA 110) GN=glnE PE=3 SV=1
Length = 995
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 635 DNKLWKLVLLLGESYLALGQAYKEDGQLHQALKTVELACSVYGSMPQHREDTKFISSMTK 694
+ L LV L+ + LG+ QL L + +G+MP RE + +++ +
Sbjct: 578 NRDLVALVALVLGAAPRLGEMLARQPQLMDGL----IDPRFFGAMPDRRELSGRLAATVQ 633
Query: 695 GSLSPIVFTDRRKMTGSFVGDMKEVNSSSNDGCLNSEQLSSAYLFWARAWT-----LVGD 749
+ S F DR ++ G + + + G ++++Q S+A+ A LV D
Sbjct: 634 DAASYEEFLDRLRLFGQ--ESLFLIGTRILSGTVSAQQASTAFADVAEGVVHTVHDLVAD 691
Query: 750 VYVEFH-MIKGKEISIQAERKPSTRELKMSSEV 781
+ H IKG+E +I A + +RE+ SS++
Sbjct: 692 RFAAQHGRIKGQETAIIAMGRLGSREMTASSDL 724
>sp|Q6CRY2|MED14_KLULA Mediator of RNA polymerase II transcription subunit 14
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RGR1 PE=3
SV=1
Length = 998
Score = 35.0 bits (79), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 959 EEAVKALG--GLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEV 1016
++ + LG L V + L+ +L K GW+C+++ +RL+ + + F+ I F ++
Sbjct: 459 QDLITVLGRLKLDKVDSILRHMLDKTGWICSDV--VRLKSSIVPSTDSTFSKDI--FVKL 514
Query: 1017 SDY-TNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1075
D+ +N L+ + + E+ + K+ S+K + M K+ + T+KL +++ Y
Sbjct: 515 KDWPSNWFLVLTIISSTNTCIVEKRIGKILSVKGVWKLKYMDKKNVITSKL---DTMTYP 571
Query: 1076 RAAKLQLNSL 1085
+ LQ++ L
Sbjct: 572 KMLTLQISIL 581
>sp|Q8A988|SYP_BACTN Proline--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=proS
PE=3 SV=1
Length = 497
Score = 33.9 bits (76), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 827 VSIAYGRKHNKRSHAKSASYSLQGDPADSFLNCKDENTKSLDNGNLQLNRGDG------T 880
+S+ Y NKR K A Y L+G P + +D L+N +++ R D T
Sbjct: 336 ISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRD-----LENNTMEVMRRDTLEKETVT 390
Query: 881 LMGASNVISEKLEDLNATNSKRVEHTSGTHDVESKVSTQVEFASRDKPKVKNGGIF 936
G + + LE++ A K+ D + T V+ K K++ GG
Sbjct: 391 CDGIETYVQKLLEEIQANIYKK------ALDYRNSKITTVDTYEEFKEKIEEGGFI 440
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,630,832
Number of Sequences: 539616
Number of extensions: 20106660
Number of successful extensions: 55495
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 55363
Number of HSP's gapped (non-prelim): 146
length of query: 1363
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1233
effective length of database: 121,419,379
effective search space: 149710094307
effective search space used: 149710094307
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)