Query 000667
Match_columns 1363
No_of_seqs 94 out of 96
Neff 3.2
Searched_HMMs 46136
Date Mon Apr 1 21:46:11 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 98.3 2.4E-06 5.2E-11 102.2 10.6 206 933-1188 225-469 (966)
2 PF14938 SNAP: Soluble NSF att 97.3 0.0026 5.6E-08 69.9 13.1 77 981-1079 73-149 (282)
3 PF13424 TPR_12: Tetratricopep 97.3 0.00037 8.1E-09 61.4 4.8 58 981-1038 3-61 (78)
4 KOG4626 O-linked N-acetylgluco 96.9 0.0038 8.3E-08 76.0 9.9 30 644-673 114-143 (966)
5 KOG1840 Kinesin light chain [C 96.8 0.016 3.5E-07 69.9 13.9 162 950-1183 256-417 (508)
6 KOG1126 DNA-binding cell divis 96.1 0.033 7.2E-07 68.4 11.0 77 1154-1236 544-626 (638)
7 PF14938 SNAP: Soluble NSF att 95.4 0.28 6.1E-06 54.2 13.9 115 996-1182 48-162 (282)
8 KOG1840 Kinesin light chain [C 95.2 0.86 1.9E-05 55.7 18.2 215 953-1271 175-397 (508)
9 PF13424 TPR_12: Tetratricopep 94.6 0.11 2.3E-06 46.0 6.5 59 950-1015 20-78 (78)
10 PRK02603 photosystem I assembl 94.5 0.043 9.4E-07 55.8 4.4 119 927-1079 29-147 (172)
11 CHL00033 ycf3 photosystem I as 94.4 0.14 3E-06 51.7 7.8 98 950-1079 50-147 (168)
12 PF13414 TPR_11: TPR repeat; P 94.4 0.061 1.3E-06 46.4 4.5 48 984-1037 4-51 (69)
13 PF09986 DUF2225: Uncharacteri 93.9 0.15 3.3E-06 55.5 7.2 91 948-1038 90-180 (214)
14 KOG1173 Anaphase-promoting com 93.9 0.14 3.1E-06 62.5 7.6 55 984-1038 415-470 (611)
15 TIGR00990 3a0801s09 mitochondr 93.7 0.37 8E-06 58.4 10.9 68 951-1038 347-414 (615)
16 TIGR00990 3a0801s09 mitochondr 93.2 0.44 9.6E-06 57.7 10.3 18 1154-1171 563-580 (615)
17 PRK11189 lipoprotein NlpI; Pro 92.6 0.84 1.8E-05 50.9 10.7 66 950-1035 79-144 (296)
18 KOG2002 TPR-containing nuclear 91.7 0.82 1.8E-05 58.9 10.2 81 949-1038 427-511 (1018)
19 cd00189 TPR Tetratricopeptide 89.9 3.8 8.2E-05 33.4 9.4 53 949-1015 14-66 (100)
20 KOG1586 Protein required for f 88.0 1.8 4E-05 49.1 8.2 106 951-1079 30-148 (288)
21 PRK11788 tetratricopeptide rep 87.1 26 0.00056 39.4 16.6 26 986-1011 72-97 (389)
22 KOG0550 Molecular chaperone (D 87.1 2.1 4.5E-05 51.6 8.4 141 931-1118 208-353 (486)
23 cd00189 TPR Tetratricopeptide 87.1 3.6 7.9E-05 33.5 7.6 30 985-1014 2-31 (100)
24 TIGR02521 type_IV_pilW type IV 85.3 7.4 0.00016 38.5 10.0 50 950-1013 46-95 (234)
25 TIGR02521 type_IV_pilW type IV 84.2 3.4 7.3E-05 40.8 7.1 49 950-1012 80-128 (234)
26 PF13414 TPR_11: TPR repeat; P 83.4 2.2 4.7E-05 36.8 4.8 50 949-1012 17-67 (69)
27 PRK15359 type III secretion sy 82.5 3.1 6.7E-05 42.0 6.2 69 950-1038 39-107 (144)
28 KOG1126 DNA-binding cell divis 82.1 3.6 7.9E-05 51.5 7.7 130 951-1119 471-605 (638)
29 KOG1130 Predicted G-alpha GTPa 81.3 8.1 0.00018 46.9 9.8 86 944-1038 164-250 (639)
30 KOG1982 Nuclear 5'-3' exoribon 81.2 57 0.0012 39.2 16.5 129 205-340 192-334 (359)
31 PLN03088 SGT1, suppressor of 80.9 2.2 4.8E-05 49.3 5.2 67 949-1035 16-82 (356)
32 TIGR02795 tol_pal_ybgF tol-pal 79.8 6 0.00013 36.2 6.6 72 949-1034 16-87 (119)
33 TIGR03302 OM_YfiO outer membra 79.1 4.5 9.8E-05 42.5 6.3 62 950-1015 85-147 (235)
34 CHL00033 ycf3 photosystem I as 79.1 3.5 7.6E-05 41.8 5.3 67 950-1023 87-155 (168)
35 KOG1173 Anaphase-promoting com 79.1 17 0.00038 45.4 11.8 160 980-1182 343-503 (611)
36 KOG2002 TPR-containing nuclear 78.4 52 0.0011 43.7 16.0 201 983-1269 307-524 (1018)
37 PF06552 TOM20_plant: Plant sp 77.3 27 0.00058 38.5 11.4 102 976-1105 25-138 (186)
38 PRK11447 cellulose synthase su 77.2 28 0.00061 46.2 14.0 52 950-1015 284-335 (1157)
39 KOG0553 TPR repeat-containing 77.1 15 0.00033 42.9 10.0 87 942-1035 22-127 (304)
40 TIGR02552 LcrH_SycD type III s 77.0 17 0.00037 34.8 9.0 50 950-1013 32-81 (135)
41 KOG1125 TPR repeat-containing 76.4 4.9 0.00011 49.9 6.4 110 934-1098 437-546 (579)
42 PRK11189 lipoprotein NlpI; Pro 76.2 8.1 0.00017 43.3 7.6 74 949-1038 40-113 (296)
43 TIGR03302 OM_YfiO outer membra 76.0 27 0.00059 36.8 11.0 70 950-1033 48-117 (235)
44 PF05276 SH3BP5: SH3 domain-bi 75.1 75 0.0016 36.2 14.6 192 942-1172 21-224 (239)
45 cd09249 BRO1_Rhophilin_2 Prote 74.6 73 0.0016 38.6 15.0 240 973-1246 103-358 (385)
46 PRK12370 invasion protein regu 72.8 17 0.00036 44.5 9.6 71 947-1037 316-386 (553)
47 PRK11447 cellulose synthase su 72.1 14 0.00031 48.9 9.5 25 648-672 183-207 (1157)
48 TIGR02917 PEP_TPR_lipo putativ 71.6 27 0.00059 42.0 10.8 46 985-1036 772-817 (899)
49 PRK12370 invasion protein regu 71.2 13 0.00028 45.3 8.2 58 948-1012 274-333 (553)
50 PF07719 TPR_2: Tetratricopept 71.2 4.1 9E-05 30.6 2.7 31 984-1014 2-32 (34)
51 PF13432 TPR_16: Tetratricopep 69.7 4.8 0.0001 34.5 3.1 50 950-1013 12-61 (65)
52 PF00244 14-3-3: 14-3-3 protei 69.5 4.9 0.00011 44.6 3.9 80 932-1018 122-208 (236)
53 PRK04841 transcriptional regul 69.1 2.2E+02 0.0047 36.4 18.3 79 950-1037 467-545 (903)
54 PRK15174 Vi polysaccharide exp 68.9 39 0.00084 42.5 11.8 64 951-1034 266-329 (656)
55 KOG1155 Anaphase-promoting com 68.7 24 0.00052 43.6 9.4 50 951-1014 346-395 (559)
56 PRK02603 photosystem I assembl 68.7 8.8 0.00019 39.3 5.3 65 950-1021 87-153 (172)
57 PF00515 TPR_1: Tetratricopept 68.7 5.6 0.00012 30.4 3.0 30 984-1013 2-31 (34)
58 KOG0548 Molecular co-chaperone 67.8 25 0.00054 43.8 9.5 195 987-1234 228-452 (539)
59 PF13176 TPR_7: Tetratricopept 67.4 6 0.00013 31.5 3.0 32 985-1016 1-32 (36)
60 KOG1941 Acetylcholine receptor 66.8 97 0.0021 37.9 13.5 49 990-1038 129-177 (518)
61 smart00101 14_3_3 14-3-3 homol 66.6 9.2 0.0002 43.2 5.3 80 932-1018 124-210 (244)
62 KOG1155 Anaphase-promoting com 66.0 45 0.00098 41.4 11.0 92 950-1075 379-496 (559)
63 PRK11788 tetratricopeptide rep 64.3 34 0.00074 38.4 9.2 31 982-1012 179-209 (389)
64 KOG0553 TPR repeat-containing 63.7 12 0.00026 43.6 5.6 69 948-1036 94-162 (304)
65 PF13429 TPR_15: Tetratricopep 63.4 46 0.00099 36.4 9.7 39 948-993 159-197 (280)
66 PF10505 NARG2_C: NMDA recepto 60.7 57 0.0012 36.7 9.9 130 212-348 17-165 (220)
67 KOG1130 Predicted G-alpha GTPa 60.6 25 0.00055 43.0 7.6 100 928-1038 97-210 (639)
68 PF13432 TPR_16: Tetratricopep 59.8 19 0.00041 30.9 4.9 59 988-1074 2-60 (65)
69 PRK09782 bacteriophage N4 rece 59.7 40 0.00088 44.8 9.9 58 373-439 36-93 (987)
70 TIGR02795 tol_pal_ybgF tol-pal 59.1 31 0.00068 31.6 6.5 30 984-1013 3-32 (119)
71 PF08631 SPO22: Meiosis protei 58.2 37 0.0008 38.1 8.1 87 947-1042 5-96 (278)
72 PF13181 TPR_8: Tetratricopept 57.9 9.9 0.00022 28.8 2.6 31 984-1014 2-32 (34)
73 cd09247 BRO1_Alix_like_2 Prote 57.7 2E+02 0.0044 33.8 14.1 48 972-1019 109-156 (346)
74 PF12309 KBP_C: KIF-1 binding 57.2 2.4E+02 0.0053 33.9 14.8 167 943-1120 139-315 (371)
75 cd05804 StaR_like StaR_like; a 56.5 16 0.00035 40.5 4.9 51 951-1015 130-180 (355)
76 TIGR02552 LcrH_SycD type III s 56.4 64 0.0014 30.9 8.4 29 985-1013 19-47 (135)
77 PF06552 TOM20_plant: Plant sp 56.3 34 0.00073 37.8 7.1 59 946-1014 46-104 (186)
78 cd09248 BRO1_Rhophilin_1 Prote 56.2 2.7E+02 0.006 33.9 15.0 67 972-1042 102-181 (384)
79 TIGR02917 PEP_TPR_lipo putativ 55.4 26 0.00056 42.1 6.7 53 984-1036 704-756 (899)
80 COG5040 BMH1 14-3-3 family pro 55.4 8.8 0.00019 42.7 2.6 77 931-1015 125-209 (268)
81 smart00028 TPR Tetratricopepti 55.4 16 0.00034 24.6 3.1 30 984-1013 2-31 (34)
82 KOG1586 Protein required for f 55.2 1.7E+02 0.0037 34.1 12.4 18 1154-1171 250-267 (288)
83 PF07719 TPR_2: Tetratricopept 54.2 17 0.00037 27.3 3.3 30 647-676 2-31 (34)
84 PF12688 TPR_5: Tetratrico pep 54.1 69 0.0015 32.6 8.5 76 952-1038 18-97 (120)
85 cd09246 BRO1_Alix_like_1 Prote 50.6 2.8E+02 0.0061 32.8 13.9 49 972-1020 107-157 (353)
86 PF08626 TRAPPC9-Trs120: Trans 50.2 1.2E+02 0.0027 41.0 12.2 47 977-1023 236-282 (1185)
87 KOG0548 Molecular co-chaperone 49.3 1.8E+02 0.0039 36.8 12.3 138 949-1115 331-473 (539)
88 PF13181 TPR_8: Tetratricopept 47.8 23 0.0005 26.9 3.1 29 647-675 2-30 (34)
89 PLN03098 LPA1 LOW PSII ACCUMUL 47.6 30 0.00066 42.5 5.6 38 1068-1105 167-208 (453)
90 PF13374 TPR_10: Tetratricopep 47.0 19 0.00042 27.8 2.7 33 984-1016 3-35 (42)
91 KOG1125 TPR repeat-containing 46.8 34 0.00073 43.0 5.9 82 985-1113 432-513 (579)
92 KOG4637 Adaptor for phosphoino 46.5 1.6E+02 0.0035 35.9 10.9 150 953-1120 174-352 (464)
93 cd09034 BRO1_Alix_like Protein 44.3 2.4E+02 0.0052 32.5 11.9 51 973-1023 108-161 (345)
94 PF13428 TPR_14: Tetratricopep 44.0 25 0.00054 28.9 3.0 30 647-676 2-31 (44)
95 cd09244 BRO1_Rhophilin Protein 43.4 5.5E+02 0.012 30.9 14.8 65 974-1042 104-181 (350)
96 KOG0550 Molecular chaperone (D 43.1 1E+02 0.0022 38.1 8.8 107 948-1083 262-368 (486)
97 PF00244 14-3-3: 14-3-3 protei 42.0 3.9E+02 0.0084 30.1 12.6 112 1143-1274 84-202 (236)
98 KOG1127 TPR repeat-containing 41.3 1.3E+02 0.0029 40.4 10.0 168 933-1120 492-686 (1238)
99 PF14559 TPR_19: Tetratricopep 41.2 28 0.0006 29.9 3.0 54 948-1015 4-57 (68)
100 KOG0543 FKBP-type peptidyl-pro 40.0 1.6E+02 0.0035 36.0 9.8 21 1055-1079 222-242 (397)
101 COG3063 PilF Tfp pilus assembl 39.7 56 0.0012 37.6 5.8 57 976-1038 28-84 (250)
102 PRK04841 transcriptional regul 39.5 7.1E+02 0.015 32.0 15.9 80 950-1036 546-625 (903)
103 KOG0994 Extracellular matrix g 39.3 9.2E+02 0.02 33.8 16.6 141 1012-1166 1520-1666(1758)
104 PRK10370 formate-dependent nit 38.6 50 0.0011 35.5 5.1 52 949-1014 53-104 (198)
105 cd09242 BRO1_ScBro1_like Prote 38.6 4.8E+02 0.01 30.9 13.2 47 973-1019 104-152 (348)
106 cd09239 BRO1_HD-PTP_like Prote 38.5 3.7E+02 0.0079 32.2 12.4 48 974-1021 112-161 (361)
107 PRK14574 hmsH outer membrane p 38.3 2.8E+02 0.006 36.7 12.3 80 952-1073 51-130 (822)
108 PF10345 Cohesin_load: Cohesin 38.1 6.4E+02 0.014 31.8 15.0 76 1102-1234 56-132 (608)
109 cd09241 BRO1_ScRim20-like Prot 37.4 4.1E+02 0.009 31.4 12.6 50 974-1023 104-155 (355)
110 PRK15359 type III secretion sy 37.4 1.3E+02 0.0028 30.6 7.5 24 989-1012 30-53 (144)
111 PRK10049 pgaA outer membrane p 37.1 6E+02 0.013 32.9 14.8 80 951-1038 212-294 (765)
112 cd02680 MIT_calpain7_2 MIT: do 36.3 1.5E+02 0.0032 28.6 7.1 43 1055-1114 20-65 (75)
113 PF09976 TPR_21: Tetratricopep 34.8 1.6E+02 0.0035 29.5 7.7 62 948-1011 5-76 (145)
114 KOG1585 Protein required for f 34.2 2.1E+02 0.0045 33.7 9.1 81 1102-1239 68-148 (308)
115 PRK09782 bacteriophage N4 rece 33.2 71 0.0015 42.6 6.2 69 949-1038 590-658 (987)
116 PF13371 TPR_9: Tetratricopept 32.9 78 0.0017 27.5 4.5 50 949-1012 9-58 (73)
117 PF12895 Apc3: Anaphase-promot 32.8 3E+02 0.0066 25.0 8.4 47 950-1008 4-50 (84)
118 KOG0551 Hsp90 co-chaperone CNS 32.4 3.4E+02 0.0073 33.1 10.6 68 961-1038 67-141 (390)
119 PF04781 DUF627: Protein of un 31.7 4.2E+02 0.009 27.6 9.9 88 950-1065 11-102 (111)
120 PF13174 TPR_6: Tetratricopept 30.4 52 0.0011 24.4 2.6 26 647-672 1-26 (33)
121 cd09240 BRO1_Alix Protein-inte 29.2 8.2E+02 0.018 29.0 13.2 48 974-1021 117-166 (346)
122 PF09986 DUF2225: Uncharacteri 29.2 67 0.0015 35.5 4.3 87 974-1077 70-157 (214)
123 KOG4648 Uncharacterized conser 28.3 1.7E+02 0.0036 35.7 7.4 26 988-1013 102-127 (536)
124 PF13371 TPR_9: Tetratricopept 27.9 1.5E+02 0.0032 25.8 5.4 27 989-1015 1-27 (73)
125 cd07603 BAR_ACAPs The Bin/Amph 27.6 5.2E+02 0.011 28.7 10.6 121 979-1114 21-154 (200)
126 KOG1127 TPR repeat-containing 27.5 1.9E+02 0.0042 39.1 8.3 73 950-1037 434-506 (1238)
127 cd07604 BAR_ASAPs The Bin/Amph 27.4 9.4E+02 0.02 27.2 13.3 42 997-1038 33-77 (215)
128 PRK15174 Vi polysaccharide exp 27.0 1.4E+02 0.003 37.8 7.0 146 950-1120 299-453 (656)
129 PF13176 TPR_7: Tetratricopept 26.8 70 0.0015 25.5 2.9 24 648-671 1-24 (36)
130 PF13431 TPR_17: Tetratricopep 26.7 33 0.00071 27.5 1.0 22 646-667 13-34 (34)
131 KOG3785 Uncharacterized conser 26.5 4.7E+02 0.01 32.3 10.5 83 982-1078 86-177 (557)
132 KOG2479 Translation initiation 26.3 1.9E+02 0.0041 35.9 7.4 84 257-351 435-527 (549)
133 PF13428 TPR_14: Tetratricopep 26.2 59 0.0013 26.8 2.5 30 984-1013 2-31 (44)
134 KOG1941 Acetylcholine receptor 26.2 3.8E+02 0.0082 33.2 9.7 88 943-1038 174-261 (518)
135 PRK10803 tol-pal system protei 25.9 1.1E+02 0.0024 34.8 5.3 33 983-1015 180-212 (263)
136 PF12688 TPR_5: Tetratrico pep 24.5 98 0.0021 31.6 4.2 48 988-1038 6-53 (120)
137 PF12309 KBP_C: KIF-1 binding 24.4 1.3E+03 0.029 27.9 14.3 179 1056-1270 135-331 (371)
138 PRK15179 Vi polysaccharide bio 24.2 9.4E+02 0.02 31.5 13.4 166 988-1274 46-221 (694)
139 PRK15363 pathogenicity island 24.0 80 0.0017 34.1 3.6 44 989-1038 75-118 (157)
140 PF07721 TPR_4: Tetratricopept 22.6 77 0.0017 23.9 2.3 23 648-670 3-25 (26)
141 PF03097 BRO1: BRO1-like domai 22.2 1.3E+03 0.028 27.0 13.5 50 970-1019 101-152 (377)
142 PF14559 TPR_19: Tetratricopep 21.9 83 0.0018 27.0 2.7 26 647-672 26-51 (68)
143 PF13374 TPR_10: Tetratricopep 21.9 1.2E+02 0.0026 23.3 3.4 29 648-676 4-32 (42)
144 cd07602 BAR_RhoGAP_OPHN1-like 21.5 8.7E+02 0.019 27.5 10.9 42 997-1038 33-81 (207)
145 PF00515 TPR_1: Tetratricopept 21.4 1.1E+02 0.0024 23.3 3.0 29 647-675 2-30 (34)
146 PF12753 Nro1: Nuclear pore co 21.4 2.4E+02 0.0053 34.6 7.1 48 1059-1120 325-372 (404)
147 PRK15363 pathogenicity island 21.2 3E+02 0.0065 29.9 7.1 46 987-1038 39-84 (157)
148 cd07638 BAR_ACAP2 The Bin/Amph 20.8 1.2E+03 0.027 26.2 12.6 149 946-1117 30-194 (200)
149 KOG0217 Mismatch repair ATPase 20.6 3.1E+02 0.0067 37.3 8.2 142 937-1089 581-737 (1125)
150 cd07636 BAR_GRAF The Bin/Amphi 20.5 5.4E+02 0.012 29.1 9.1 42 997-1038 33-81 (207)
151 cd07615 BAR_Endophilin_A3 The 20.1 9.2E+02 0.02 27.6 10.9 134 1011-1196 75-212 (223)
152 PRK10049 pgaA outer membrane p 20.1 2.1E+02 0.0046 36.8 6.7 27 986-1012 362-388 (765)
153 KOG3060 Uncharacterized conser 20.1 1.5E+03 0.033 27.0 13.2 179 1022-1250 60-238 (289)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.31 E-value=2.4e-06 Score=102.17 Aligned_cols=206 Identities=19% Similarity=0.192 Sum_probs=120.8
Q ss_pred cceeeeccCCCCCChhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhH--------------------
Q 000667 933 GGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRI-------------------- 992 (1363)
Q Consensus 933 GgiFkyL~~~~~~D~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~-------------------- 992 (1363)
|+.|+--| ++--||+-|++|++. ...+....-.+|||+-|++.+
T Consensus 225 g~~f~~~G---------ei~~aiq~y~eAvkl-------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a 288 (966)
T KOG4626|consen 225 GCVFNAQG---------EIWLAIQHYEEAVKL-------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA 288 (966)
T ss_pred chHHhhcc---------hHHHHHHHHHHhhcC-------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh
Confidence 77887766 677899999999966 234445556789999998776
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 000667 993 -------RLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAK 1065 (1363)
Q Consensus 993 -------rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak 1065 (1363)
|+||.++.-|+++|.+||.. -+|+---|||||....-.+++.... .+||||+.. -
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~------~P~F~~Ay~NlanALkd~G~V~ea~-----------~cYnkaL~l-~ 350 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALEL------QPNFPDAYNNLANALKDKGSVTEAV-----------DCYNKALRL-C 350 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhc------CCCchHHHhHHHHHHHhccchHHHH-----------HHHHHHHHh-C
Confidence 22234444444444444432 2333334444444333332222211 566666654 3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhcccchhhhhcccccccCCCCcccchhhhh
Q 000667 1066 LEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKEL 1145 (1363)
Q Consensus 1066 ~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eel 1145 (1363)
--|-.|+.-||..++|-..+.+-. +.+. .=-+|+..||-+.-+||.+|++...+.++++- =.|-+
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~-~ly~-~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~-------------Ykeal 415 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEAT-RLYL-KALEVFPEFAAAHNNLASIYKQQGNLDDAIMC-------------YKEAL 415 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHH-HHHH-HHHhhChhhhhhhhhHHHHHHhcccHHHHHHH-------------HHHHH
Confidence 335566666888887777665433 2332 23478999999999999999999988877650 01111
Q ss_pred hhhcccHHHHHHHHHHHhhhcc-----hhhHHHH-------HHHHHHHhhccccc
Q 000667 1146 RKHEVSANDAIREALSLYESMG-----DLRKQEA-------AYAYFQLACYQRDC 1188 (1363)
Q Consensus 1146 eK~~Isa~Dai~eAL~lyeslG-----pL~k~rA-------A~ah~rLAs~~~d~ 1188 (1363)
+-. -.+-||+.+-=-+|...| --++-|| |-||--||+.|+|.
T Consensus 416 rI~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 416 RIK-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS 469 (966)
T ss_pred hcC-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence 111 023344433333333333 1122222 67899999999998
No 2
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.32 E-value=0.0026 Score=69.85 Aligned_cols=77 Identities=16% Similarity=0.288 Sum_probs=56.5
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q 000667 981 KKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQA 1060 (1363)
Q Consensus 981 r~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkA 1060 (1363)
.-|+++.+.+..+-. ..+.+|+.+|.+|+..|++.+++...| +.+..+|+.+..++ ..|.+|
T Consensus 73 ~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA-------~~~~~lA~~ye~~~----------~d~e~A 134 (282)
T PF14938_consen 73 EAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAA-------KCLKELAEIYEEQL----------GDYEKA 134 (282)
T ss_dssp HHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHH-------HHHHHHHHHHCCTT------------HHHH
T ss_pred HHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHH-------HHHHHHHHHHHHHc----------CCHHHH
Confidence 345666666666544 388899999999999999999998887 55555555444331 367899
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 000667 1061 LETAKLEYCESLRYYRAAK 1079 (1363)
Q Consensus 1061 le~ak~eY~eAL~yyg~~K 1079 (1363)
++. |.+|+++|....
T Consensus 135 i~~----Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 135 IEY----YQKAAELYEQEG 149 (282)
T ss_dssp HHH----HHHHHHHHHHTT
T ss_pred HHH----HHHHHHHHHHCC
Confidence 999 999999999887
No 3
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.26 E-value=0.00037 Score=61.40 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=49.7
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc-ccceeheecchhhHHHHHHH
Q 000667 981 KKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD-YTNIILINCNLGHGRRALAE 1038 (1363)
Q Consensus 981 r~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D-~tNiaLInCNLG~lrR~LAe 1038 (1363)
-++.+++.||.++...+.+.+|+.+|++++..++...+ +..+|.++.|||..++.+.+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 36788999999999999999999999999999888884 45689999999999887765
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.89 E-value=0.0038 Score=76.00 Aligned_cols=30 Identities=37% Similarity=0.390 Sum_probs=26.7
Q ss_pred HhhhhhhhhhHhhhhchHHHHHHHHHHHHH
Q 000667 644 LLGESYLALGQAYKEDGQLHQALKTVELAC 673 (1363)
Q Consensus 644 llgesylalg~ayked~ql~~~lk~velac 673 (1363)
-..|.|--||.+|||-|||.+||...+.|-
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~ai 143 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAI 143 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 467899999999999999999999888764
No 5
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.76 E-value=0.016 Score=69.95 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecch
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1029 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNL 1029 (1363)
+-..|+..|++|+.++ ..-+...+-..|.++|-|++.|..+.-+.+|+.++++|+..++. ..- -|-
T Consensus 256 k~~eAv~ly~~AL~i~------e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~-~~~-------~~~ 321 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTIR------EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK-LLG-------ASH 321 (508)
T ss_pred cHHHHHHHHHHHHHHH------HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-hhc-------cCh
Confidence 4467899999999886 22333455567788888888888888899999999999999999 111 122
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHH
Q 000667 1030 GHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYL 1109 (1363)
Q Consensus 1030 G~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl 1109 (1363)
|++-..+-+ -+...+.. +.|.+|... |.+||++|-.+= -+.+-.++.+|-
T Consensus 322 ~~v~~~l~~----~~~~~~~~----~~~Eea~~l----~q~al~i~~~~~------------------g~~~~~~a~~~~ 371 (508)
T KOG1840|consen 322 PEVAAQLSE----LAAILQSM----NEYEEAKKL----LQKALKIYLDAP------------------GEDNVNLAKIYA 371 (508)
T ss_pred HHHHHHHHH----HHHHHHHh----cchhHHHHH----HHHHHHHHHhhc------------------cccchHHHHHHH
Confidence 222222221 11222222 566666666 999999887222 122346899999
Q ss_pred HHHHhhhcccchhhhhcccccccCCCCcccchhhhhhhhcccHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhh
Q 000667 1110 RLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLAC 1183 (1363)
Q Consensus 1110 ~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~~Isa~Dai~eAL~lyeslGpL~k~rAA~ah~rLAs 1183 (1363)
+||.++.-.-. |+ +.+ +.+++|++.....+.---+..++..-+||.
T Consensus 372 nl~~l~~~~gk----~~-------------------ea~-----~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 372 NLAELYLKMGK----YK-------------------EAE-----ELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred HHHHHHHHhcc----hh-------------------HHH-----HHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 99999987777 44 222 678888887766642112234666667773
No 6
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.033 Score=68.40 Aligned_cols=77 Identities=23% Similarity=0.267 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHhhccccchhhhhccccccCCCCCCCchhhH-HHHHh-----hhHHHHHHHHH
Q 000667 1154 DAIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVH-RVRQY-----ASLAERNWQKA 1227 (1363)
Q Consensus 1154 Dai~eAL~lyeslGpL~k~rAA~ah~rLAs~~~d~cLr~le~d~~~e~~~Kk~~~~~q-~~kq~-----asLAe~nwqKA 1227 (1363)
+.|.+|+.+ |-..||++|.-|-+.|.|..|. -||. +.++.++..++- -++.. ..|-| .++|..|+-=|
T Consensus 544 ~~~~~A~~l-d~kn~l~~~~~~~il~~~~~~~--eal~--~LEeLk~~vP~e-s~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 544 QLYEKAIHL-DPKNPLCKYHRASILFSLGRYV--EALQ--ELEELKELVPQE-SSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHHHhc-CCCCchhHHHHHHHHHhhcchH--HHHH--HHHHHHHhCcch-HHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 555555432 3335999999999999988653 3344 444444444543 22221 12222 35788888888
Q ss_pred hhhcCCCCC
Q 000667 1228 MDFYGPRSH 1236 (1363)
Q Consensus 1228 ~k~Y~p~~h 1236 (1363)
+++=.+.++
T Consensus 618 ~~ldpkg~~ 626 (638)
T KOG1126|consen 618 LDLDPKGAQ 626 (638)
T ss_pred hcCCCccch
Confidence 887666666
No 7
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.37 E-value=0.28 Score=54.20 Aligned_cols=115 Identities=21% Similarity=0.283 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000667 996 RKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1075 (1363)
Q Consensus 996 ~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yy 1075 (1363)
.++|.+|-.||.+|...++..++....+-.+-+.|..++- ..+.+|+++ |.+|+++|
T Consensus 48 ~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-------------------~~~~~Ai~~----~~~A~~~y 104 (282)
T PF14938_consen 48 AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-------------------GDPDEAIEC----YEKAIEIY 104 (282)
T ss_dssp TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-------------------TTHHHHHHH----HHHHHHHH
T ss_pred HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-------------------hCHHHHHHH----HHHHHHHH
Confidence 4789999999999999999988876554222222222221 134578888 99999999
Q ss_pred HHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhcccchhhhhcccccccCCCCcccchhhhhhhhcccHHHH
Q 000667 1076 RAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDA 1155 (1363)
Q Consensus 1076 g~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~~Isa~Da 1155 (1363)
.... .+ .+-|.++.++|.++..... +.++. | +.
T Consensus 105 ~~~G-------------~~-------~~aA~~~~~lA~~ye~~~~-----------------------d~e~A-i---~~ 137 (282)
T PF14938_consen 105 REAG-------------RF-------SQAAKCLKELAEIYEEQLG-----------------------DYEKA-I---EY 137 (282)
T ss_dssp HHCT--------------H-------HHHHHHHHHHHHHHCCTT-------------------------HHHH-H---HH
T ss_pred HhcC-------------cH-------HHHHHHHHHHHHHHHHHcC-----------------------CHHHH-H---HH
Confidence 7665 44 5678889999888765511 12333 6 89
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHh
Q 000667 1156 IREALSLYESMGDLRKQEAAYAYFQLA 1182 (1363)
Q Consensus 1156 i~eAL~lyeslGpL~k~rAA~ah~rLA 1182 (1363)
+++|+.+|+.+| ....++-+.-++|
T Consensus 138 Y~~A~~~y~~e~--~~~~a~~~~~~~A 162 (282)
T PF14938_consen 138 YQKAAELYEQEG--SPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC--ChhhHHHHHHHHH
Confidence 999999999998 3333455666666
No 8
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.15 E-value=0.86 Score=55.69 Aligned_cols=215 Identities=20% Similarity=0.244 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhh-cCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc--cccceeheecch
Q 000667 953 SALSCYEEAVKAL-GGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVS--DYTNIILINCNL 1029 (1363)
Q Consensus 953 ~AieCYeeAl~al-~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~--D~tNiaLInCNL 1029 (1363)
.++.|+...+.+. ..+.-..+....+... |+..|..+..+++|+.-|..|++.-++.+ +|.=++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~-------La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va------ 241 (508)
T KOG1840|consen 175 SSIEGTLKGLDIQAKGLGDEDPERLRTLRN-------LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA------ 241 (508)
T ss_pred ccchhhHHHHHHHHHhcccCCchHHHHHHH-------HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH------
Confidence 4455554444332 2233334444444433 77777788889999999999998833322 111111
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHH
Q 000667 1030 GHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYL 1109 (1363)
Q Consensus 1030 G~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl 1109 (1363)
..+-.+|..+.++ .-|.+|+-. |.+||.++-.-. ++.+ -..|.|+.
T Consensus 242 -~~l~~~a~~y~~~-----------~k~~eAv~l----y~~AL~i~e~~~----------G~~h--------~~va~~l~ 287 (508)
T KOG1840|consen 242 -SMLNILALVYRSL-----------GKYDEAVNL----YEEALTIREEVF----------GEDH--------PAVAATLN 287 (508)
T ss_pred -HHHHHHHHHHHHh-----------ccHHHHHHH----HHHHHHHHHHhc----------CCCC--------HHHHHHHH
Confidence 2222344444444 567788888 999998887666 3334 47899999
Q ss_pred HHHHhhhcccchhhhhcccccccCCCCcccchhhhhhhhcccHHHHHHHHHHHhhhc-chhhHHHHHHHHHHHhhccccc
Q 000667 1110 RLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESM-GDLRKQEAAYAYFQLACYQRDC 1188 (1363)
Q Consensus 1110 ~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~~Isa~Dai~eAL~lyesl-GpL~k~rAA~ah~rLAs~~~d~ 1188 (1363)
+||.++-..-.+.+ |.+-+.+|+.+++-. |.... |+|..+--+|
T Consensus 288 nLa~ly~~~GKf~E----------------------------A~~~~e~Al~I~~~~~~~~~~-~v~~~l~~~~------ 332 (508)
T KOG1840|consen 288 NLAVLYYKQGKFAE----------------------------AEEYCERALEIYEKLLGASHP-EVAAQLSELA------ 332 (508)
T ss_pred HHHHHHhccCChHH----------------------------HHHHHHHHHHHHHHhhccChH-HHHHHHHHHH------
Confidence 99999954444221 125667777777663 32222 4444444444
Q ss_pred hhhhhccccccCCCCCCCchhhHHHHHhhhHHHHHHHHHhhhcC--CC-CCch-hHHHHHhhccchhhhhccccchHHHH
Q 000667 1189 FLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYG--PR-SHPT-MYLTILMERSDLSFRLSCFLHSNAML 1264 (1363)
Q Consensus 1189 cLr~le~d~~~e~~~Kk~~~~~q~~kq~asLAe~nwqKA~k~Y~--p~-~hp~-~~L~IlmERsAL~~~lst~~~SnvmL 1264 (1363)
..+.-.+ + ...|++.||+|++.|. |. .||. .-+...| +-||.++.....+.=|+
T Consensus 333 -~~~~~~~--------~-----------~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl--~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 333 -AILQSMN--------E-----------YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANL--AELYLKMGKYKEAEELY 390 (508)
T ss_pred -HHHHHhc--------c-----------hhHHHHHHHHHHHHHHhhccccchHHHHHHHHH--HHHHHHhcchhHHHHHH
Confidence 1111111 1 2338888999999988 33 4433 3334444 34555644555555599
Q ss_pred HHHHHHH
Q 000667 1265 ETALSCL 1271 (1363)
Q Consensus 1265 e~aL~~m 1271 (1363)
+.|+.+.
T Consensus 391 k~ai~~~ 397 (508)
T KOG1840|consen 391 KKAIQIL 397 (508)
T ss_pred HHHHHHH
Confidence 9999885
No 9
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.55 E-value=0.11 Score=45.99 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKE 1015 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~e 1015 (1363)
....|+++|++|+.+...++.. ...++++++.||.++..+....+|+.+|.+|++.|++
T Consensus 20 ~~~~A~~~~~~al~~~~~~~~~-------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 20 RYDEALDYYEKALDIEEQLGDD-------HPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHHTTTH-------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 5678999999999885333332 2334666666666666667788999999999999874
No 10
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.48 E-value=0.043 Score=55.79 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=72.4
Q ss_pred CCcccccceeeeccCCCCCChhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 000667 927 KPKVKNGGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAF 1006 (1363)
Q Consensus 927 ~~~~~~GgiFkyL~~~~~~D~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF 1006 (1363)
.++.+....|-.++ ..--...+...|+.||++|++.- |. +. ..++++.-||..+.....+.+|+.+|
T Consensus 29 ~~~~~~a~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~---~~-~~-------~~~~~~~~la~~~~~~g~~~~A~~~~ 95 (172)
T PRK02603 29 NKKAKEAFVYYRDG--MSAQADGEYAEALENYEEALKLE---ED-PN-------DRSYILYNMGIIYASNGEHDKALEYY 95 (172)
T ss_pred ccHhhhHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHh---hc-cc-------hHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33344444444343 33333445668999999999763 11 11 13567778888888888889999999
Q ss_pred HHHHHHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000667 1007 ANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAK 1079 (1363)
Q Consensus 1007 ~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K 1079 (1363)
.+|+.... +.+-.+-++|..+..+++....+ ..+-+|++. |.+|++++....
T Consensus 96 ~~al~~~p------~~~~~~~~lg~~~~~~g~~~~a~-----------~~~~~A~~~----~~~A~~~~~~a~ 147 (172)
T PRK02603 96 HQALELNP------KQPSALNNIAVIYHKRGEKAEEA-----------GDQDEAEAL----FDKAAEYWKQAI 147 (172)
T ss_pred HHHHHhCc------ccHHHHHHHHHHHHHcCChHhHh-----------hCHHHHHHH----HHHHHHHHHHHH
Confidence 99998742 22333446666665555433322 234455555 777777776655
No 11
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.40 E-value=0.14 Score=51.74 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecch
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1029 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNL 1029 (1363)
....|+++|+.|+... + .+. ..+++++.||..+.......+|+.+|++++... +..+-.+-|+
T Consensus 50 ~~~~A~~~~~~al~l~---~-~~~-------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~------~~~~~~~~~l 112 (168)
T CHL00033 50 EYAEALQNYYEAMRLE---I-DPY-------DRSYILYNIGLIHTSNGEHTKALEYYFQALERN------PFLPQALNNM 112 (168)
T ss_pred CHHHHHHHHHHHHhcc---c-cch-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcHHHHHHH
Confidence 3558899999998663 1 111 134577888888888888899999999999763 2223446678
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000667 1030 GHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAK 1079 (1363)
Q Consensus 1030 G~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K 1079 (1363)
|..++.+++..... +.|..|+.. |.+|+.+|..+-
T Consensus 113 a~i~~~~~~~~~~~-----------g~~~~A~~~----~~~a~~~~~~a~ 147 (168)
T CHL00033 113 AVICHYRGEQAIEQ-----------GDSEIAEAW----FDQAAEYWKQAI 147 (168)
T ss_pred HHHHHHhhHHHHHc-----------ccHHHHHHH----HHHHHHHHHHHH
Confidence 88888888755443 344555555 667776666654
No 12
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.39 E-value=0.061 Score=46.35 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=39.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHH
Q 000667 984 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALA 1037 (1363)
Q Consensus 984 nV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LA 1037 (1363)
-+++.+|..++..+.+.+|+.+|.+||.. |+.| +.+++|+|..+..+.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~-~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNN-AEAYYNLGLAYMKLG 51 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STTH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC-HHHHHHHHHHHHHhC
Confidence 47889999999999999999999999997 4444 558888888776654
No 13
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.88 E-value=0.15 Score=55.47 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheec
Q 000667 948 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1027 (1363)
Q Consensus 948 E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInC 1027 (1363)
+.++..|++-|.-|+-...-.+..+.....+.-|++|.++++|....++.-+++|...|++|+.....-...++-+-+..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 67888999999999988654555666999999999999999999999999999999999999887766444555453333
Q ss_pred chhhHHHHHHH
Q 000667 1028 NLGHGRRALAE 1038 (1363)
Q Consensus 1028 NLG~lrR~LAe 1038 (1363)
=+|-+.|-++.
T Consensus 170 LigeL~rrlg~ 180 (214)
T PF09986_consen 170 LIGELNRRLGN 180 (214)
T ss_pred HHHHHHHHhCC
Confidence 44555544443
No 14
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.14 Score=62.52 Aligned_cols=55 Identities=25% Similarity=0.291 Sum_probs=43.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccc-eeheecchhhHHHHHHH
Q 000667 984 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN-IILINCNLGHGRRALAE 1038 (1363)
Q Consensus 984 nV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tN-iaLInCNLG~lrR~LAe 1038 (1363)
-|.||||+..++.+.+.+|...|.+++..-+++.-..- -+=++.||||.+|-|-.
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 47899999999999999999999999955444433322 34468899999998743
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.74 E-value=0.37 Score=58.40 Aligned_cols=68 Identities=16% Similarity=0.091 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchh
Q 000667 951 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLG 1030 (1363)
Q Consensus 951 L~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG 1030 (1363)
...|+.+|+.|+..- | +..+++.-+|..++....+.+|+.+|++++... ++..-++.++|
T Consensus 347 ~~eA~~~~~kal~l~---P-----------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~lg 406 (615)
T TIGR00990 347 HLEALADLSKSIELD---P-----------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN------SEDPDIYYHRA 406 (615)
T ss_pred HHHHHHHHHHHHHcC---C-----------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHH
Confidence 345677777776442 1 122334444444555556667777777776652 23344556666
Q ss_pred hHHHHHHH
Q 000667 1031 HGRRALAE 1038 (1363)
Q Consensus 1031 ~lrR~LAe 1038 (1363)
.++..+.+
T Consensus 407 ~~~~~~g~ 414 (615)
T TIGR00990 407 QLHFIKGE 414 (615)
T ss_pred HHHHHcCC
Confidence 65554433
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.18 E-value=0.44 Score=57.74 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhcchhhH
Q 000667 1154 DAIREALSLYESMGDLRK 1171 (1363)
Q Consensus 1154 Dai~eAL~lyeslGpL~k 1171 (1363)
..+++|+++..+.+++.+
T Consensus 563 ~~~e~A~~l~~~~~e~~~ 580 (615)
T TIGR00990 563 KLFERAAELARTEGELVQ 580 (615)
T ss_pred HHHHHHHHHhccHHHHHH
Confidence 667777777776665433
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=92.60 E-value=0.84 Score=50.92 Aligned_cols=66 Identities=14% Similarity=0.062 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecch
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1029 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNL 1029 (1363)
....|+.+|++|++.- |.. ..++|-+|..+...+.+.+|+.+|.+|+... ++.+-.++|+
T Consensus 79 ~~~~A~~~~~~Al~l~---P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~l 138 (296)
T PRK11189 79 LRALARNDFSQALALR---PDM-----------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD------PTYNYAYLNR 138 (296)
T ss_pred CHHHHHHHHHHHHHcC---CCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHH
Confidence 4557888999998653 222 3677888888888888999999999998753 3334455666
Q ss_pred hhHHHH
Q 000667 1030 GHGRRA 1035 (1363)
Q Consensus 1030 G~lrR~ 1035 (1363)
|..+..
T Consensus 139 g~~l~~ 144 (296)
T PRK11189 139 GIALYY 144 (296)
T ss_pred HHHHHH
Confidence 665543
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.65 E-value=0.82 Score=58.92 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccc---eeh-
Q 000667 949 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN---IIL- 1024 (1363)
Q Consensus 949 ~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tN---iaL- 1024 (1363)
.|+-.++.-|+-|+..|.+-. .... . -+.|-+|..+|..+++.+|...|.+|....+++.++-+ +-|
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~-~~ip-~-------E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKG-KQIP-P-------EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLT 497 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcC-CCCC-H-------HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhH
Confidence 345677889999997763211 0000 0 24566788888889999999999999998776654433 112
Q ss_pred eecchhhHHHHHHH
Q 000667 1025 INCNLGHGRRALAE 1038 (1363)
Q Consensus 1025 InCNLG~lrR~LAe 1038 (1363)
+-.|+|++.-.+..
T Consensus 498 ~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 498 LKYNLARLLEELHD 511 (1018)
T ss_pred HHHHHHHHHHhhhh
Confidence 46778777666544
No 19
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=89.89 E-value=3.8 Score=33.45 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000667 949 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKE 1015 (1363)
Q Consensus 949 ~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~e 1015 (1363)
.+...|+..|+++++.. |... .++..+|..++..+.+.+|..+|..++..+..
T Consensus 14 ~~~~~A~~~~~~~~~~~---~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 14 GDYDEALEYYEKALELD---PDNA-----------DAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred hcHHHHHHHHHHHHhcC---CccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 35567888888887653 2221 56777888888888899999999998886543
No 20
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.03 E-value=1.8 Score=49.09 Aligned_cols=106 Identities=22% Similarity=0.324 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccc-------ee
Q 000667 951 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN-------II 1023 (1363)
Q Consensus 951 L~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tN-------ia 1023 (1363)
...|.+||..|-..+ . ++.-...-|+++-+..-+.+.-..=..+-.+|.+|-+.|+++ |+.+ -|
T Consensus 30 ~eeAadl~~~Aan~y-k-------laK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~ai 100 (288)
T KOG1586|consen 30 YEEAAELYERAANMY-K-------LAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAI 100 (288)
T ss_pred hHHHHHHHHHHHHHH-H-------HHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHH
Confidence 345777887777554 1 122233446666666666655544455666777777777777 5433 34
Q ss_pred heecchhhHHHH------HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000667 1024 LINCNLGHGRRA------LAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAK 1079 (1363)
Q Consensus 1024 LInCNLG~lrR~------LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K 1079 (1363)
=|||-+||.+|+ +|+.+.+.. ..|.||+.. |.+|-+||--..
T Consensus 101 eIyt~~Grf~~aAk~~~~iaEiyEsdl----------~d~ekaI~~----YE~Aae~yk~ee 148 (288)
T KOG1586|consen 101 EIYTDMGRFTMAAKHHIEIAEIYESDL----------QDFEKAIAH----YEQAAEYYKGEE 148 (288)
T ss_pred HHHHhhhHHHHHHhhhhhHHHHHhhhH----------HHHHHHHHH----HHHHHHHHcchh
Confidence 577889999994 454444442 577899999 999999997655
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=87.15 E-value=26 Score=39.35 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=12.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000667 986 CNEMGRIRLERKEMEKGEHAFANAIN 1011 (1363)
Q Consensus 986 ~NELG~~rle~~~lkKSe~aF~~aI~ 1011 (1363)
++.||..+...+.+.+|...|+.++.
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~~l~ 97 (389)
T PRK11788 72 HLALGNLFRRRGEVDRAIRIHQNLLS 97 (389)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 34444444444445555555555544
No 22
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.13 E-value=2.1 Score=51.59 Aligned_cols=141 Identities=22% Similarity=0.253 Sum_probs=86.2
Q ss_pred cccceeeeccCCCCCChhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000667 931 KNGGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAI 1010 (1363)
Q Consensus 931 ~~GgiFkyL~~~~~~D~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI 1010 (1363)
-+|-++.|.. |.-.|+.-|++||..= .....+-..+-.-|+=-++-|=|--.+.+.++.+|+.+|.+||
T Consensus 208 vrg~~~yy~~---------~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 208 VRGLCLYYND---------NADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred hccccccccc---------chHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 3589999987 8899999999999652 2222222222333333455555666677899999999999999
Q ss_pred HHhhhccc-----ccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000667 1011 NAFKEVSD-----YTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSL 1085 (1363)
Q Consensus 1011 ~aF~eV~D-----~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K~~l~~~ 1085 (1363)
..--.-.+ +.|-|+++.-|||++-+++. ++.|++. ...|.+||-.=+....-|
T Consensus 277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisd------------------c~~Al~i-D~syikall~ra~c~l~l--- 334 (486)
T KOG0550|consen 277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISD------------------CNEALKI-DSSYIKALLRRANCHLAL--- 334 (486)
T ss_pred cCCccccchhHHHHHHhHhhhcccCCchhhhhh------------------hhhhhhc-CHHHHHHHHHHHHHHHHH---
Confidence 87554332 34445555556677666655 2233322 233555544333333111
Q ss_pred hhhhccccccchhhHHHHHHHHHHHHHHhhhcc
Q 000667 1086 VEEAGSVSNSLRMEVHTQFAHTYLRLGMLLARE 1118 (1363)
Q Consensus 1086 ~~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~ 1118 (1363)
=.|.-|.-+|+=+|.+...
T Consensus 335 --------------e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 335 --------------EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred --------------HHHHHHHHHHHHHHhhccc
Confidence 1288888888888876554
No 23
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=87.06 E-value=3.6 Score=33.54 Aligned_cols=30 Identities=7% Similarity=0.148 Sum_probs=25.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000667 985 VCNEMGRIRLERKEMEKGEHAFANAINAFK 1014 (1363)
Q Consensus 985 V~NELG~~rle~~~lkKSe~aF~~aI~aF~ 1014 (1363)
++..+|..++.++.+.+|+..|.++++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 31 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP 31 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 567788888889999999999999988653
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=85.34 E-value=7.4 Score=38.48 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAF 1013 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF 1013 (1363)
+...|++.|+++++.. |. ...+++.+|..++.+..+.+|+.+|.+++...
T Consensus 46 ~~~~A~~~~~~~l~~~---p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 95 (234)
T TIGR02521 46 DLEVAKENLDKALEHD---PD-----------DYLAYLALALYYQQLGELEKAEDSFRRALTLN 95 (234)
T ss_pred CHHHHHHHHHHHHHhC---cc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667888888887552 22 12466677888888888999999999999864
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=84.17 E-value=3.4 Score=40.82 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1012 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~a 1012 (1363)
+...|++.|++|++.. |.. +.+++.+|..++..+.+.+|+..|.+++..
T Consensus 80 ~~~~A~~~~~~al~~~---~~~-----------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 80 ELEKAEDSFRRALTLN---PNN-----------GDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred CHHHHHHHHHHHHhhC---CCC-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5567899999998653 222 235666777777788899999999999874
No 26
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=83.36 E-value=2.2 Score=36.83 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHH-HHHHHHHHHHHHHHH
Q 000667 949 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERK-EMEKGEHAFANAINA 1012 (1363)
Q Consensus 949 ~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~-~lkKSe~aF~~aI~a 1012 (1363)
.+...|+++|++|++.- |. ... +++-+|..++.+. .+.+|+.+|.+||..
T Consensus 17 ~~~~~A~~~~~~ai~~~---p~----~~~-------~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 17 GDYEEAIEYFEKAIELD---PN----NAE-------AYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp THHHHHHHHHHHHHHHS---TT----HHH-------HHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC---CC----CHH-------HHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 47789999999999763 22 222 5666666666665 789999999999875
No 27
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=82.51 E-value=3.1 Score=42.03 Aligned_cols=69 Identities=14% Similarity=0.030 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecch
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1029 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNL 1029 (1363)
....|+++|..|+..= |. -..+++.+|........+.+|+.+|..|+.. .++-+-.+.|+
T Consensus 39 ~~~~A~~~~~~al~~~---P~-----------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~p~~~~a~~~l 98 (144)
T PRK15359 39 DYSRAVIDFSWLVMAQ---PW-----------SWRAHIALAGTWMMLKEYTTAINFYGHALML------DASHPEPVYQT 98 (144)
T ss_pred CHHHHHHHHHHHHHcC---CC-----------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHHHHHH
Confidence 3456888888888552 11 2455677777777777888999999999975 34556677788
Q ss_pred hhHHHHHHH
Q 000667 1030 GHGRRALAE 1038 (1363)
Q Consensus 1030 G~lrR~LAe 1038 (1363)
|..+..+++
T Consensus 99 g~~l~~~g~ 107 (144)
T PRK15359 99 GVCLKMMGE 107 (144)
T ss_pred HHHHHHcCC
Confidence 876665443
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.10 E-value=3.6 Score=51.52 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchh
Q 000667 951 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLG 1030 (1363)
Q Consensus 951 L~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG 1030 (1363)
+..|..||..|+++. -|.=|+|.=||.+|+.++-+.-|+.+|.+|+.. .+.|. .|-|-+|
T Consensus 471 ~d~a~~~fr~Al~~~--------------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-----NP~ns-vi~~~~g 530 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVD--------------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-----NPSNS-VILCHIG 530 (638)
T ss_pred HHhHHHHHHhhhcCC--------------chhhHHHHhhhhheeccchhhHHHHHHHhhhcC-----Cccch-hHHhhhh
Confidence 567899999999775 366789999999999999999999999999865 24454 4667788
Q ss_pred hHHHHHHHHHHhh-h---hhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHH
Q 000667 1031 HGRRALAEEMVSK-V---ESLKIHTIFQNMYKQALET-AKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFA 1105 (1363)
Q Consensus 1031 ~lrR~LAee~~sk-~---~~~ke~~~~~~~ynkAle~-ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA 1105 (1363)
..+..+......- + +..-+.--+.-.|++|.-. .-.-|.+||+.|.+=| ++.-|=|
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk-------------------~~vP~es 591 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELK-------------------ELVPQES 591 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHH-------------------HhCcchH
Confidence 8887777622221 1 0111111122333333211 1112788888887766 1123556
Q ss_pred HHHHHHHHhhhccc
Q 000667 1106 HTYLRLGMLLARED 1119 (1363)
Q Consensus 1106 ~Tyl~LG~LLqd~~ 1119 (1363)
..|+-||..+-+.-
T Consensus 592 ~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 592 SVFALLGKIYKRLG 605 (638)
T ss_pred HHHHHHHHHHHHHc
Confidence 67777776554433
No 29
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=81.33 E-value=8.1 Score=46.90 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=60.9
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCCCchhhHH-HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccce
Q 000667 944 VGDAENNLSSALSCYEEAVKALGGLPTVSAELQ-SVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNI 1022 (1363)
Q Consensus 944 ~~D~E~NL~~AieCYeeAl~al~~lp~~~ae~~-svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNi 1022 (1363)
..++-..|..|++.|.+-|+...++ +...-+ -..-.+||-++-||-| ..|+++-..-+..=++..|.+-.
T Consensus 164 ~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyYlLGdf-------~~ai~~H~~RL~ia~efGDrAae 234 (639)
T KOG1130|consen 164 NAEVTSALENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYYLLGDF-------DQAIHFHKLRLEIAQEFGDRAAE 234 (639)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceeeeeccH-------HHHHHHHHHHHHHHHHhhhHHHH
Confidence 4566778999999999999876322 222111 1334456666666654 46777777778888888888888
Q ss_pred eheecchhhHHHHHHH
Q 000667 1023 ILINCNLGHGRRALAE 1038 (1363)
Q Consensus 1023 aLInCNLG~lrR~LAe 1038 (1363)
-=.|.|||+.+-++++
T Consensus 235 RRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHhhcccchhhhhhcc
Confidence 8888999998888877
No 30
>KOG1982 consensus Nuclear 5'-3' exoribonuclease-interacting protein, Rai1p [Replication, recombination and repair]
Probab=81.25 E-value=57 Score=39.20 Aligned_cols=129 Identities=18% Similarity=0.255 Sum_probs=88.0
Q ss_pred CCCcceeEeeeecccceeccccccc-ccCC------CceeEEEeeccc-ccccCc-----hhhHHHHHHhhhcCCCcEEE
Q 000667 205 NDGFLRVLFWQFHNFRMLLGSDLLL-FSNE------KYVAVSLHLWDV-ARQVTP-----LTWLEAWLDNVMASVPELAI 271 (1363)
Q Consensus 205 ~~~F~Rnl~WtF~di~MLVGSDmPI-Fg~~------~~paVSLrLrD~-skpIn~-----lTgLD~WLDNlM~NVPElam 271 (1363)
..+|-.++.=.+++.++|.|.-+-. |..+ ++--|-|+-+-+ ..|... ...++.|+--.+.+||.|++
T Consensus 192 ~~ef~~V~r~~l~~~~~l~~~evdc~~~~~~~~~~~~~~~VELKts~~~~~~~~~~~~er~K~~KwW~QsFL~Gi~~Iii 271 (359)
T KOG1982|consen 192 NEEFCSVVRTRLGGSILLFGAEVDCIDYSGPNDFDKRGNYVELKTSYKEMGPSQVDKFERLKLLKWWLQSFLVGIPRIII 271 (359)
T ss_pred cceeeeeeeeccCCceEecccceeeeccCCCcChhhcCceEEEEeehhhcCccccchhhhhHHHHHHHHHHhcCCCeEEE
Confidence 4678888888889989988876533 3331 123566765531 122211 36789999999999999999
Q ss_pred EEee-ccceeceeeecccccccccCCCCCCCCCcChhHHHhhHHHHHHHHhhhccCCCceEEEEeeCCCC
Q 000667 272 CYHE-NGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGED 340 (1363)
Q Consensus 272 CyH~-nGIVQ~YEliKTeDIp~leg~s~~g~~~F~P~vV~~~A~nIL~FLksNCtkdGhTYWL~K~~~ed 340 (1363)
=+.- ||-|+..+-+++.|||... ..++|.+--+..-.||+|+..-=.+++---.+|....+.
T Consensus 272 G~Rddng~v~~i~~~~v~~l~k~~-------~kW~~~~~~~~l~~~l~~i~~~l~~~~d~~~v~~~~f~~ 334 (359)
T KOG1982|consen 272 GFRDDNGHVEEIDTIEVRDLPKNK-------FKWNPSVCLNFLFTILSWILKTLPADDDPCLVFLFSFEG 334 (359)
T ss_pred EEecCCCceeeeeeeehhhccccC-------CCCCHHHHHHHHHHHHHHHHHhcccCCCceEEEEeeccC
Confidence 7764 6767776666666666543 349999999999999999988777766434444444333
No 31
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=80.93 E-value=2.2 Score=49.30 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecc
Q 000667 949 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1028 (1363)
Q Consensus 949 ~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCN 1028 (1363)
.+...|+++|++|++.- |... .++..+|..++....+..|+.+|.+||... ++.+..+.+
T Consensus 16 ~~~~~Ai~~~~~Al~~~---P~~~-----------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------P~~~~a~~~ 75 (356)
T PLN03088 16 DDFALAVDLYTQAIDLD---PNNA-----------ELYADRAQANIKLGNFTEAVADANKAIELD------PSLAKAYLR 75 (356)
T ss_pred CCHHHHHHHHHHHHHhC---CCCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCCHHHHHH
Confidence 46678999999999763 3221 244556666666677889999999999873 233444555
Q ss_pred hhhHHHH
Q 000667 1029 LGHGRRA 1035 (1363)
Q Consensus 1029 LG~lrR~ 1035 (1363)
+|..+..
T Consensus 76 lg~~~~~ 82 (356)
T PLN03088 76 KGTACMK 82 (356)
T ss_pred HHHHHHH
Confidence 5555443
No 32
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=79.79 E-value=6 Score=36.23 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecc
Q 000667 949 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1028 (1363)
Q Consensus 949 ~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCN 1028 (1363)
.+...|++.|+.++... |... ....++..+|..++..+.+..|...|.+++..+ .++.....+.-+
T Consensus 16 ~~~~~A~~~~~~~~~~~---~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~ 81 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKY---PKST--------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKSPKAPDALLK 81 (119)
T ss_pred CCHHHHHHHHHHHHHHC---CCcc--------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCCCcccHHHHH
Confidence 35566777777777542 2111 123466778888888899999999999999765 233334444555
Q ss_pred hhhHHH
Q 000667 1029 LGHGRR 1034 (1363)
Q Consensus 1029 LG~lrR 1034 (1363)
+|..+.
T Consensus 82 ~~~~~~ 87 (119)
T TIGR02795 82 LGMSLQ 87 (119)
T ss_pred HHHHHH
Confidence 555543
No 33
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=79.10 E-value=4.5 Score=42.50 Aligned_cols=62 Identities=11% Similarity=0.240 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEM-GRIRLERKEMEKGEHAFANAINAFKE 1015 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NEL-G~~rle~~~lkKSe~aF~~aI~aF~e 1015 (1363)
+...|+..|+.+++.. |.. .+....+-.+|+++.++ +....+.+...+|...|.++++.+-.
T Consensus 85 ~~~~A~~~~~~~l~~~---p~~-~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 85 DYAEAIAAADRFIRLH---PNH-PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred CHHHHHHHHHHHHHHC---cCC-CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 5667889999988664 332 23333556677777654 33333446788888888888876544
No 34
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=79.08 E-value=3.5 Score=41.84 Aligned_cols=67 Identities=25% Similarity=0.330 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc--cccccee
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEV--SDYTNII 1023 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV--~D~tNia 1023 (1363)
....|+++|+.|+..- | .+...+..+|.++..+|+.++....+..+...|.+|+..|+.. -||.|..
T Consensus 87 ~~~eA~~~~~~Al~~~---~----~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 87 EHTKALEYYFQALERN---P----FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred CHHHHHHHHHHHHHhC---c----CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 4467999999999652 2 2235577889999999999888888999999999999999887 6776553
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.05 E-value=17 Score=45.42 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=96.9
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecc-hhhHHHHHHHHHHhhhhhhhhhhhhHHHHH
Q 000667 980 KKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN-LGHGRRALAEEMVSKVESLKIHTIFQNMYK 1058 (1363)
Q Consensus 980 kr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCN-LG~lrR~LAee~~sk~~~~ke~~~~~~~yn 1058 (1363)
+.-|-+|--.|-.+-...+-..|..||.+|-+.|..-.=|.-++...|- +++. .||+.+-.+.-..--.+-....+.
T Consensus 343 ~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~--kLAe~Ff~~A~ai~P~Dplv~~El 420 (611)
T KOG1173|consen 343 PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL--KLAEKFFKQALAIAPSDPLVLHEL 420 (611)
T ss_pred ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH--HHHHHHHHHHHhcCCCcchhhhhh
Confidence 4456667777888777799999999999999999998888776655443 2222 244432222111000011112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhcccchhhhhcccccccCCCCcc
Q 000667 1059 QALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCE 1138 (1363)
Q Consensus 1059 kAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~ 1138 (1363)
-.+..-+.+|.+|+.++-++..-...+.+|.. .|....-.|.|+|-++++. +
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-----~w~p~~~NLGH~~Rkl~~~-----------~------------ 472 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-----FWEPTLNNLGHAYRKLNKY-----------E------------ 472 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhcccccc-----chhHHHHhHHHHHHHHhhH-----------H------------
Confidence 33334467889999998888733333333322 5888888899998886642 2
Q ss_pred cchhhhhhhhcccHHHHHHHHHHHhhhcchhhHHHHHHHHHHHh
Q 000667 1139 GRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLA 1182 (1363)
Q Consensus 1139 ~~~~eeleK~~Isa~Dai~eAL~lyeslGpL~k~rAA~ah~rLA 1182 (1363)
+-| +.+++||.++.-+-.- .--+||+|+-|+
T Consensus 473 ---------eAI---~~~q~aL~l~~k~~~~-~asig~iy~llg 503 (611)
T KOG1173|consen 473 ---------EAI---DYYQKALLLSPKDAST-HASIGYIYHLLG 503 (611)
T ss_pred ---------HHH---HHHHHHHHcCCCchhH-HHHHHHHHHHhc
Confidence 126 8899999988766311 113455555554
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=78.38 E-value=52 Score=43.65 Aligned_cols=201 Identities=20% Similarity=0.159 Sum_probs=121.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHH--HHH
Q 000667 983 GWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMY--KQA 1060 (1363)
Q Consensus 983 GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~y--nkA 1060 (1363)
.-.|+=|||.|-.+.++.+|..+|-.++++ |+-|..|=+--||-.+-...+...+..-..+.+-...+.| ++.
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKA-----DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 445777888888888999999999888874 5666777777788888777776555531111111101111 123
Q ss_pred HHHHHHHH-------HHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhcccchhhhhcccccccC
Q 000667 1061 LETAKLEY-------CESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDI 1133 (1363)
Q Consensus 1061 le~ak~eY-------~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~ 1133 (1363)
+.+-=..+ .+|..++|...+.. -+=+.+|+.+|-+|-..+|
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-------------------~~d~~a~l~laql~e~~d~------------- 429 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-------------------PVDSEAWLELAQLLEQTDP------------- 429 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-------------------cccHHHHHHHHHHHHhcCh-------------
Confidence 33222222 45666666655111 2346788999988876666
Q ss_pred CCCcccchhhhhhhhcccHHHHHHHHHHHhhhcc---hhh-HHHHHHHHHHHhhccccchhhhhccccccCCCCCCCchh
Q 000667 1134 SVPCEGRTRKELRKHEVSANDAIREALSLYESMG---DLR-KQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSF 1209 (1363)
Q Consensus 1134 ~~~~~~~~~eeleK~~Isa~Dai~eAL~lyeslG---pL~-k~rAA~ah~rLAs~~~d~cLr~le~d~~~e~~~Kk~~~~ 1209 (1363)
-++ + +|+.+|+..+++.| |+- ---.|--||+++ + +.+
T Consensus 430 ------------~~s-L---~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g-------------~------~~~---- 470 (1018)
T KOG2002|consen 430 ------------WAS-L---DAYGNALDILESKGKQIPPEVLNNVASLHFRLG-------------N------IEK---- 470 (1018)
T ss_pred ------------HHH-H---HHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhc-------------C------hHH----
Confidence 233 6 99999998888886 221 112233455554 1 233
Q ss_pred hHHHHHhhhHHHHHHHHHhhhcCCCCCchh----HHHHHhhccchhhhhccccchHHHHHHHHH
Q 000667 1210 VHRVRQYASLAERNWQKAMDFYGPRSHPTM----YLTILMERSDLSFRLSCFLHSNAMLETALS 1269 (1363)
Q Consensus 1210 ~q~~kq~asLAe~nwqKA~k~Y~p~~hp~~----~L~IlmERsAL~~~lst~~~SnvmLe~aL~ 1269 (1363)
|..|..+|...-.+...+++ -||+.-..+.+.|.+....-+..|.-++|.
T Consensus 471 ----------A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 471 ----------ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred ----------HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 67777777776554443333 377777788888887666655556555543
No 37
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.31 E-value=27 Score=38.54 Aligned_cols=102 Identities=24% Similarity=0.205 Sum_probs=63.5
Q ss_pred HHHHHHhhhhhhhhhhHHH---HHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhh
Q 000667 976 QSVLKKKGWVCNEMGRIRL---ERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTI 1052 (1363)
Q Consensus 976 ~svlkr~GnV~NELG~~rl---e~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~ 1052 (1363)
...+-|-|-+.-||+.++= ..++++.|+.-|++||+. .+|.-=.++|+|..+.-+|....... .
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------~P~~hdAlw~lGnA~ts~A~l~~d~~-------~ 91 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------NPNKHDALWCLGNAYTSLAFLTPDTA-------E 91 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHH---HH-------H
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHHHhhcCChH-------H
Confidence 5678899999999999853 236677777777777765 45555567899999999998433331 1
Q ss_pred hHHHHHHHHHHH---------HHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHH
Q 000667 1053 FQNMYKQALETA---------KLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFA 1105 (1363)
Q Consensus 1053 ~~~~ynkAle~a---------k~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA 1105 (1363)
.+.+|.+|.++= -..|.+||+.. +| .|.|..||+-|.+
T Consensus 92 A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~--~k-------------ap~lh~e~~~~~~ 138 (186)
T PF06552_consen 92 AEEYFEKATEYFQKAVDEDPNNELYRKSLEMA--AK-------------APELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH--HT-------------HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH--Hh-------------hHHHHHHHHHHHh
Confidence 113334443331 13467777665 35 6778888877754
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=77.23 E-value=28 Score=46.23 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKE 1015 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~e 1015 (1363)
+...|+.+|++|++.- |.. .-++..||..++.+..+.+|+.+|++++..+..
T Consensus 284 ~~~~A~~~l~~aL~~~---P~~-----------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 284 QGGKAIPELQQAVRAN---PKD-----------SEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred CHHHHHHHHHHHHHhC---CCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4568999999999763 322 235677888888888999999999999987643
No 39
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.08 E-value=15 Score=42.92 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=50.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhc---CCCCchhhHHHHHHHhhh---------hhhhh-------hhHHHHHHHHHHH
Q 000667 942 PVVGDAENNLSSALSCYEEAVKALG---GLPTVSAELQSVLKKKGW---------VCNEM-------GRIRLERKEMEKG 1002 (1363)
Q Consensus 942 ~~~~D~E~NL~~AieCYeeAl~al~---~lp~~~ae~~svlkr~Gn---------V~NEL-------G~~rle~~~lkKS 1002 (1363)
....|-..-|..|+.|.+.+.+.=- ....+- -...++++.+. .++++ |-..|+.+.+.+|
T Consensus 22 ~~s~~~~esleva~qc~e~~f~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~e~~~~AE~LK~eGN~~m~~~~Y~eA 100 (304)
T KOG0553|consen 22 WISEDGAESLEVAIQCLEAAFGFRRDDVDRAEGT-TLLDSFESAERHPVEILTPEEDKALAESLKNEGNKLMKNKDYQEA 100 (304)
T ss_pred CCCCcchhHHHHhHHHHHHHhCcchhhccccccc-cHHHHHHHhccCcccccChHhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3456667788889999888875410 011111 12223333333 12222 2234556888899
Q ss_pred HHHHHHHHHHhhhcccccceeheecchhhHHHH
Q 000667 1003 EHAFANAINAFKEVSDYTNIILINCNLGHGRRA 1035 (1363)
Q Consensus 1003 e~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~ 1035 (1363)
.+.|..||.. |++| |+.|||-+-.|.-
T Consensus 101 v~kY~~AI~l-----~P~n-AVyycNRAAAy~~ 127 (304)
T KOG0553|consen 101 VDKYTEAIEL-----DPTN-AVYYCNRAAAYSK 127 (304)
T ss_pred HHHHHHHHhc-----CCCc-chHHHHHHHHHHH
Confidence 9999999975 5666 5678884443333
No 40
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=76.96 E-value=17 Score=34.82 Aligned_cols=50 Identities=18% Similarity=0.052 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAF 1013 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF 1013 (1363)
+...|+++|+.++..- |. -.+++..+|..++.++.+.+|..+|..++..+
T Consensus 32 ~~~~A~~~~~~~~~~~---p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 32 RYDEALKLFQLLAAYD---PY-----------NSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred cHHHHHHHHHHHHHhC---CC-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556667776666432 22 14677788888888888999999999999874
No 41
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.39 E-value=4.9 Score=49.88 Aligned_cols=110 Identities=22% Similarity=0.348 Sum_probs=75.1
Q ss_pred ceeeeccCCCCCChhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000667 934 GIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAF 1013 (1363)
Q Consensus 934 giFkyL~~~~~~D~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF 1013 (1363)
||-.||. .....|+.||+.||.+= | - =+-.||.||-.--+..--.+|+.||.+|+..
T Consensus 437 GVLy~ls--------~efdraiDcf~~AL~v~---P---n--------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL- 493 (579)
T KOG1125|consen 437 GVLYNLS--------GEFDRAVDCFEAALQVK---P---N--------DYLLWNRLGATLANGNRSEEAISAYNRALQL- 493 (579)
T ss_pred HHHHhcc--------hHHHHHHHHHHHHHhcC---C---c--------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-
Confidence 6666766 45678999999999552 1 1 1335888888766666667888888888865
Q ss_pred hhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 000667 1014 KEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVS 1093 (1363)
Q Consensus 1014 ~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~ 1093 (1363)
.+|++=.-.|||-.+.++ .+|++|++. |..||..-.. ++-..++.+.+
T Consensus 494 -----qP~yVR~RyNlgIS~mNl------------------G~ykEA~~h----lL~AL~mq~k-----s~~~~~~~~~s 541 (579)
T KOG1125|consen 494 -----QPGYVRVRYNLGISCMNL------------------GAYKEAVKH----LLEALSMQRK-----SRNHNKAPMAS 541 (579)
T ss_pred -----CCCeeeeehhhhhhhhhh------------------hhHHHHHHH----HHHHHHhhhc-----ccccccCCcch
Confidence 578887777777666655 378888888 8888876443 22333444445
Q ss_pred ccchh
Q 000667 1094 NSLRM 1098 (1363)
Q Consensus 1094 ~~Lwd 1098 (1363)
.+||-
T Consensus 542 e~iw~ 546 (579)
T KOG1125|consen 542 ENIWQ 546 (579)
T ss_pred HHHHH
Confidence 55663
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=76.24 E-value=8.1 Score=43.34 Aligned_cols=74 Identities=11% Similarity=-0.001 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecc
Q 000667 949 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1028 (1363)
Q Consensus 949 ~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCN 1028 (1363)
.-...+|..|++++... +..+... +-.++++|..+.....+.+|...|.+||.. .++.+-.+.|
T Consensus 40 ~~~e~~i~~~~~~l~~~---~~~~~~~-------a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~ 103 (296)
T PRK11189 40 LQQEVILARLNQILASR---DLTDEER-------AQLHYERGVLYDSLGLRALARNDFSQALAL------RPDMADAYNY 103 (296)
T ss_pred hHHHHHHHHHHHHHccc---cCCcHhh-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCHHHHHH
Confidence 56778899999988432 2222222 234778888887778888999999999985 3455667778
Q ss_pred hhhHHHHHHH
Q 000667 1029 LGHGRRALAE 1038 (1363)
Q Consensus 1029 LG~lrR~LAe 1038 (1363)
+|..++.+.+
T Consensus 104 lg~~~~~~g~ 113 (296)
T PRK11189 104 LGIYLTQAGN 113 (296)
T ss_pred HHHHHHHCCC
Confidence 8877776665
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=76.00 E-value=27 Score=36.79 Aligned_cols=70 Identities=9% Similarity=0.031 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecch
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1029 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNL 1029 (1363)
+...|++.|++++... |..+ ... -++..+|..++..+.+.+|...|+++++.+- +++.+...+-++
T Consensus 48 ~~~~A~~~~~~~~~~~---p~~~-~~~-------~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~~ 113 (235)
T TIGR03302 48 DYTEAIKYFEALESRY---PFSP-YAE-------QAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---NHPDADYAYYLR 113 (235)
T ss_pred CHHHHHHHHHHHHHhC---CCch-hHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCchHHHHHHH
Confidence 3456788888877654 3222 111 2445667777777889999999999998775 333333333444
Q ss_pred hhHH
Q 000667 1030 GHGR 1033 (1363)
Q Consensus 1030 G~lr 1033 (1363)
|..+
T Consensus 114 g~~~ 117 (235)
T TIGR03302 114 GLSN 117 (235)
T ss_pred HHHH
Confidence 4444
No 44
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=75.15 E-value=75 Score=36.22 Aligned_cols=192 Identities=19% Similarity=0.247 Sum_probs=110.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHH-HHHHHHHHHHHHHHHHhhhccccc
Q 000667 942 PVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLER-KEMEKGEHAFANAINAFKEVSDYT 1020 (1363)
Q Consensus 942 ~~~~D~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~-~~lkKSe~aF~~aI~aF~eV~D~t 1020 (1363)
+.||.+|..|..|-.-|...+.-. ...+..+.+|+|. |.+-+|=|++- ...+++....-+|...|+.-.+--
T Consensus 21 d~IN~lE~~L~~ar~~fr~~l~e~------~~kL~~~~kkLg~-~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h 93 (239)
T PF05276_consen 21 DEINRLENELDEARATFRRLLSES------TKKLNELAKKLGS-CIEKARPYYEARRKAKEAQQEAQKAALQYERANSMH 93 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999988654 6788999999994 88999988873 333445555555555555444333
Q ss_pred ceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 000667 1021 NIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALET----------AKLEYCESLRYYRAAKLQLNSLVEEAG 1090 (1363)
Q Consensus 1021 NiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~----------ak~eY~eAL~yyg~~K~~l~~~~~~~~ 1090 (1363)
+.| +=+-++|+.-...-..++.-..-+.+.|+|..- |..+-.+..+.|..+...+..+..+-.
T Consensus 94 ~aA-------Ke~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lk 166 (239)
T PF05276_consen 94 AAA-------KEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLK 166 (239)
T ss_pred HHH-------HHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 445555552211111111111122455544432 222333334444444444444433333
Q ss_pred cccccchhhHHHHHHHHHHHHHHhhhcccchhhhhcccccccCCCCcccchhhhhhhhcccHHHHHHHHHHHhhhcc-hh
Q 000667 1091 SVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMG-DL 1169 (1363)
Q Consensus 1091 ~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~~Isa~Dai~eAL~lyeslG-pL 1169 (1363)
+. ..=|--||.|.-.+...-. ..+ ....++++.+.-|..-|..||.-+|.-. ++
T Consensus 167 r~---------I~KSrPYfe~K~~~~~~l~---~~k-------------~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeI 221 (239)
T PF05276_consen 167 RA---------IKKSRPYFELKAKFNQQLE---EQK-------------EKVEELEAKVKQAKSRYSEALRNLEQISEEI 221 (239)
T ss_pred HH---------HHhhhHHHHHHHHHHHHHH---HHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 3445667777666554433 112 3567788887788888888888887764 44
Q ss_pred hHH
Q 000667 1170 RKQ 1172 (1363)
Q Consensus 1170 ~k~ 1172 (1363)
..+
T Consensus 222 H~~ 224 (239)
T PF05276_consen 222 HEQ 224 (239)
T ss_pred HHH
Confidence 433
No 45
>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2. This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-
Probab=74.55 E-value=73 Score=38.61 Aligned_cols=240 Identities=14% Similarity=0.094 Sum_probs=121.0
Q ss_pred hhHHHHHHHhhhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHhhhcccccceeh-------eecchhhHHHHHHHHHHhh
Q 000667 973 AELQSVLKKKGWVCNEMGRI--RLERKEMEKGEHAFANAINAFKEVSDYTNIIL-------INCNLGHGRRALAEEMVSK 1043 (1363)
Q Consensus 973 ae~~svlkr~GnV~NELG~~--rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaL-------InCNLG~lrR~LAee~~sk 1043 (1363)
-|+.+|+=.+|=.+-.||.. |-..+-+|+|..+|..|..+|+-+.++..-+- .-.=|..+|-+-|+|..=+
T Consensus 103 fEkasVLFNigAl~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~~~ps~Dls~~~L~~L~~LmLAQAQEc~~~ 182 (385)
T cd09249 103 LEKASILFNIGALYTQIGTRCNRQTQAGLESAVDAFQRAAGVLNYLKETFTHTPSYDMSPAMLSVLVKMMLAQAQECLFE 182 (385)
T ss_pred HHHHHHHHhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777788777777765 44458899999999999999999998521000 0011345666666644322
Q ss_pred hhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhH-----HHHHHHHHHHHHHhhhc
Q 000667 1044 VESL-KIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEV-----HTQFAHTYLRLGMLLAR 1117 (1363)
Q Consensus 1044 ~~~~-ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV-----~~qlA~Tyl~LG~LLqd 1117 (1363)
-... ..+ +.+..-.+.||+ ..+.-.+|..+-..++. +.....-|.-|-.+ .---|-++|++|+.|.+
T Consensus 183 Kai~d~~k----~~~~~i~kiAkl-Aaqvs~~Y~~a~~al~s--~~~~~~i~~~W~~~v~~K~~~f~AlA~Y~~A~~l~~ 255 (385)
T cd09249 183 KISLPGIR----NEFFTLVKMAQE-AAKVGEVYMQVHTAMNQ--APVKENIPYSWSSLVQVKAHHYNALAHYFVATLLID 255 (385)
T ss_pred HHHhccCc----chhhHHHHHHHH-HHHHHHHHHHHHHHHhc--ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 001 111000011111 22333344443322221 01111223345222 22457788999999998
Q ss_pred ccchhhhhcccccccCCCCcccchhhhhhhhcccHHHHHHHHHHHhhhcc-hhhHHHHHHHHHHHhhccccchhhhhccc
Q 000667 1118 EDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMG-DLRKQEAAYAYFQLACYQRDCFLKFLESD 1196 (1363)
Q Consensus 1118 ~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~~Isa~Dai~eAL~lyeslG-pL~k~rAA~ah~rLAs~~~d~cLr~le~d 1196 (1363)
+...... +....+|-.-..=|+|-+.+.-.+.+. +.-...-+.+|.+=|-.+|---+|....+
T Consensus 256 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~hl~~a~~~~eea~r~~~~c 319 (385)
T cd09249 256 HQLNPSD----------------DEDKQEKALSQLYDHMPEGLTPLTILKNKQQRRLLGKAHLRRAIMHHEEAIREASLC 319 (385)
T ss_pred hhcCccc----------------chHHHHHHHHHHHHhccccCChhhhhcccHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7663210 112223321111123333333222232 22222335578877777766667777776
Q ss_pred cccCCCCCCCchhhHHHHHhhhHHHHHHHHHhhhcCCCCCchhHHHHHhh
Q 000667 1197 HKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTMYLTILME 1246 (1363)
Q Consensus 1197 ~~~e~~~Kk~~~~~q~~kq~asLAe~nwqKA~k~Y~p~~hp~~~L~IlmE 1246 (1363)
- .++...-....-....++++.-|...+..++|+.+..+
T Consensus 320 ~-----------~l~~~~~l~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~ 358 (385)
T cd09249 320 K-----------KLRNIDVLQEVLSAAHNRSLLKYAQHQKEDDFLDLIDA 358 (385)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhcccc
Confidence 2 11111111222334567788888888888888876543
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=72.80 E-value=17 Score=44.46 Aligned_cols=71 Identities=15% Similarity=-0.018 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceehee
Q 000667 947 AENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILIN 1026 (1363)
Q Consensus 947 ~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLIn 1026 (1363)
.+..+..|+.+|++|++.- |. -+.++..+|..++....+.+|+.+|++|+... +|.+-.+
T Consensus 316 ~~~~~~~A~~~~~~Al~ld---P~-----------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~ 375 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD---HN-----------NPQALGLLGLINTIHSEYIVGSLLFKQANLLS------PISADIK 375 (553)
T ss_pred cchHHHHHHHHHHHHHhcC---CC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHH
Confidence 4456788999999998552 22 34455667777777788999999999999863 4444455
Q ss_pred cchhhHHHHHH
Q 000667 1027 CNLGHGRRALA 1037 (1363)
Q Consensus 1027 CNLG~lrR~LA 1037 (1363)
.++|..+...+
T Consensus 376 ~~lg~~l~~~G 386 (553)
T PRK12370 376 YYYGWNLFMAG 386 (553)
T ss_pred HHHHHHHHHCC
Confidence 66665555443
No 47
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=72.14 E-value=14 Score=48.91 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=19.6
Q ss_pred hhhhhhHhhhhchHHHHHHHHHHHH
Q 000667 648 SYLALGQAYKEDGQLHQALKTVELA 672 (1363)
Q Consensus 648 sylalg~ayked~ql~~~lk~vela 672 (1363)
.+++||++|-..|+..+|++..+-+
T Consensus 183 ~~~~LA~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 183 LRNTLALLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4677888888888888888887754
No 48
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=71.62 E-value=27 Score=41.97 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=29.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHH
Q 000667 985 VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRAL 1036 (1363)
Q Consensus 985 V~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~L 1036 (1363)
+++.+|..+...+.+.+|+..|.+++..+ ++-+.++.|+|.++..+
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKA------PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhc
Confidence 45566666666677888888888888764 23344455566555544
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=71.21 E-value=13 Score=45.35 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHH--HHHHHHHHHHHHHHHHHHH
Q 000667 948 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIR--LERKEMEKGEHAFANAINA 1012 (1363)
Q Consensus 948 E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~r--le~~~lkKSe~aF~~aI~a 1012 (1363)
..++..|+.+|++|++.- |.+ ...+..+|+++..++... .....+.+|..++.+|+..
T Consensus 274 ~~~~~~A~~~~~~Al~ld---P~~----a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMS---PNS----IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred HHHHHHHHHHHHHHHhcC---Ccc----HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 467789999999999653 333 334455677666665532 1345678899999988876
No 50
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.20 E-value=4.1 Score=30.64 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=26.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000667 984 WVCNEMGRIRLERKEMEKGEHAFANAINAFK 1014 (1363)
Q Consensus 984 nV~NELG~~rle~~~lkKSe~aF~~aI~aF~ 1014 (1363)
-++..||..++..+.+++|..+|.+|+..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3678899999999999999999999998753
No 51
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=69.69 E-value=4.8 Score=34.52 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAF 1013 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF 1013 (1363)
+...|+++|+++++.. | .-.+++..+|++++.++.+.+|..+|++++...
T Consensus 12 ~~~~A~~~~~~~l~~~---P-----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQD---P-----------DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHHHHHCCS---T-----------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHC---C-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5678889999888543 1 245677788888888888999999999998653
No 52
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=69.46 E-value=4.9 Score=44.58 Aligned_cols=80 Identities=29% Similarity=0.459 Sum_probs=59.9
Q ss_pred ccceeeeccCCCCCC-hhHHHHHHHHHHHHHHHhhcC-CCCchhhHHHHHHHhhhhhhhhhhHHHH-----HHHHHHHHH
Q 000667 932 NGGIFKYLEDPVVGD-AENNLSSALSCYEEAVKALGG-LPTVSAELQSVLKKKGWVCNEMGRIRLE-----RKEMEKGEH 1004 (1363)
Q Consensus 932 ~GgiFkyL~~~~~~D-~E~NL~~AieCYeeAl~al~~-lp~~~ae~~svlkr~GnV~NELG~~rle-----~~~lkKSe~ 1004 (1363)
+|..|.|+.+-..+| .+.....|.++|++|+..... ||...+. |+|-+.|- ++|+++ .+-++=|..
T Consensus 122 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~------rLgl~LN~-svF~yei~~~~~~A~~ia~~ 194 (236)
T PF00244_consen 122 KGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL------RLGLALNY-SVFYYEILNDPEKAIEIAKQ 194 (236)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH------HHHHHHHH-HHHHHHTSS-HHHHHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH------HHHHHHHH-HHHHHHHcCChHHHHHHHHH
Confidence 699999999555443 256789999999999999765 5554443 45666664 677766 377777889
Q ss_pred HHHHHHHHhhhccc
Q 000667 1005 AFANAINAFKEVSD 1018 (1363)
Q Consensus 1005 aF~~aI~aF~eV~D 1018 (1363)
||.+||..+...++
T Consensus 195 afd~a~~~l~~l~e 208 (236)
T PF00244_consen 195 AFDEAISELDTLSE 208 (236)
T ss_dssp HHHHHHHGGGGSHT
T ss_pred HHHHHHhhhcccch
Confidence 99999999987655
No 53
>PRK04841 transcriptional regulator MalT; Provisional
Probab=69.15 E-value=2.2e+02 Score=36.44 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecch
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1029 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNL 1029 (1363)
+...|...+++|+..+ +.... ...+.+.+-+|..+.....+..+..+|++++..++...+....+..++|+
T Consensus 467 ~~~~A~~~~~~al~~~---~~~~~------~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 467 DPEEAERLAELALAEL---PLTWY------YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred CHHHHHHHHHHHHhcC---CCccH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 3457888889888653 22211 12345566788888888899999999999999999988877766666777
Q ss_pred hhHHHHHH
Q 000667 1030 GHGRRALA 1037 (1363)
Q Consensus 1030 G~lrR~LA 1037 (1363)
|..+...+
T Consensus 538 a~~~~~~G 545 (903)
T PRK04841 538 SEILFAQG 545 (903)
T ss_pred HHHHHHCC
Confidence 76655443
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=68.87 E-value=39 Score=42.48 Aligned_cols=64 Identities=8% Similarity=0.072 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchh
Q 000667 951 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLG 1030 (1363)
Q Consensus 951 L~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG 1030 (1363)
...|+.+|+.|++.- |.. . -+++-+|..++.+..+.+|+.+|.+++.. + ++...++.++|
T Consensus 266 ~~~A~~~~~~Al~l~---P~~----~-------~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~-P~~~~a~~~La 325 (656)
T PRK15174 266 KLQAAEHWRHALQFN---SDN----V-------RIVTLYADALIRTGQNEKAIPLLQQSLAT-----H-PDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHHhhC---CCC----H-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C-CCCHHHHHHHH
Confidence 356888888888653 321 1 23444555555556677888888888875 2 22334455555
Q ss_pred hHHH
Q 000667 1031 HGRR 1034 (1363)
Q Consensus 1031 ~lrR 1034 (1363)
..+.
T Consensus 326 ~~l~ 329 (656)
T PRK15174 326 RALR 329 (656)
T ss_pred HHHH
Confidence 4443
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=68.71 E-value=24 Score=43.63 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000667 951 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFK 1014 (1363)
Q Consensus 951 L~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~ 1014 (1363)
=.+|+.-|..|++ +-++.-.||-=||-.|+|.+|-..|+.+|..||++..
T Consensus 346 HEKAv~YFkRALk--------------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 346 HEKAVMYFKRALK--------------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred HHHHHHHHHHHHh--------------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 4579999999994 3456667888899999999999999999999998764
No 56
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=68.68 E-value=8.8 Score=39.32 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc--cccc
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVS--DYTN 1021 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~--D~tN 1021 (1363)
+...|+++|++|+... |.. ...+..+|+++..+|.....+..+.++...|.+|+..|+... |+-|
T Consensus 87 ~~~~A~~~~~~al~~~---p~~----~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 87 EHDKALEYYHQALELN---PKQ----PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred CHHHHHHHHHHHHHhC---ccc----HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 4577899999999763 322 344557799999999998888889899999999999888766 6666
No 57
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=68.67 E-value=5.6 Score=30.41 Aligned_cols=30 Identities=10% Similarity=0.126 Sum_probs=25.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000667 984 WVCNEMGRIRLERKEMEKGEHAFANAINAF 1013 (1363)
Q Consensus 984 nV~NELG~~rle~~~lkKSe~aF~~aI~aF 1013 (1363)
.+|+.+|..++.++.+.+|+.+|.+||+.-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 478889999999999999999999999864
No 58
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=67.80 E-value=25 Score=43.78 Aligned_cols=195 Identities=20% Similarity=0.238 Sum_probs=105.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHH--HHHhhh--hhhhhhh-----------
Q 000667 987 NEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE--EMVSKV--ESLKIHT----------- 1051 (1363)
Q Consensus 987 NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAe--e~~sk~--~~~ke~~----------- 1051 (1363)
-+||.-.+..+.+..++.++..+|..-+.+.+++|++-+|.-+|+.-+..+- .-+.++ .....+-
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 3455555667889999999999999999999999999888887765433221 000000 0000000
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhcccchhhhhccccc
Q 000667 1052 -IFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAW 1130 (1363)
Q Consensus 1052 -~~~~~ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~ 1130 (1363)
...+.|..++++ |.+||--+.... .|+. -+.+.--+.-++-++-..|..
T Consensus 308 ~~k~~~~~~ai~~----~~kaLte~Rt~~-~ls~-----------------lk~~Ek~~k~~e~~a~~~pe~-------- 357 (539)
T KOG0548|consen 308 YTKREDYEGAIKY----YQKALTEHRTPD-LLSK-----------------LKEAEKALKEAERKAYINPEK-------- 357 (539)
T ss_pred hhhHHhHHHHHHH----HHHHhhhhcCHH-HHHH-----------------HHHHHHHHHHHHHHHhhChhH--------
Confidence 011456666666 777776665522 1111 112222223333333223311
Q ss_pred ccCCCCcccchhhhhhhhcccHHHHH-----HHHHHHhh-------hcchhhHHHHHHHHHHHhhcccc--chhhhhccc
Q 000667 1131 EDISVPCEGRTRKELRKHEVSANDAI-----REALSLYE-------SMGDLRKQEAAYAYFQLACYQRD--CFLKFLESD 1196 (1363)
Q Consensus 1131 ~~~~~~~~~~~~eeleK~~Isa~Dai-----~eAL~lye-------slGpL~k~rAA~ah~rLAs~~~d--~cLr~le~d 1196 (1363)
..+ +|. ..||++ ++|+++|+ .+.-+|-.|| .+|-.|+.|-+- +|=..++.+
T Consensus 358 ----------A~e--~r~--kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRA-ac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 358 ----------AEE--ERE--KGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRA-ACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred ----------HHH--HHH--HHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHH-HHHHHHhhHHHHHHHHHHHHhcC
Confidence 011 111 133443 35566555 3347777775 577777755431 123334443
Q ss_pred cccCCCCCCCchhhHHHHHhhhHHHHHHHHHhhhcCCC
Q 000667 1197 HKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPR 1234 (1363)
Q Consensus 1197 ~~~e~~~Kk~~~~~q~~kq~asLAe~nwqKA~k~Y~p~ 1234 (1363)
. +.+| -..+|-.+--+.+.|.||++.|...
T Consensus 423 p---~~~k-----gy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 423 P---NFIK-----AYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred c---hHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2233 3666777777899999999998766
No 59
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=67.44 E-value=6 Score=31.52 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=25.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000667 985 VCNEMGRIRLERKEMEKGEHAFANAINAFKEV 1016 (1363)
Q Consensus 985 V~NELG~~rle~~~lkKSe~aF~~aI~aF~eV 1016 (1363)
+++.||.++..+..+.+|+.+|++++..-++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 46789999999999999999999988544443
No 60
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=66.81 E-value=97 Score=37.86 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHH
Q 000667 990 GRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE 1038 (1363)
Q Consensus 990 G~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAe 1038 (1363)
|+-.+...-|.++...|++|.++=.+++|++-=-=|+|-||.++-.+-.
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 3333344567789999999999999999999888899999998866543
No 61
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=66.62 E-value=9.2 Score=43.19 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=58.3
Q ss_pred ccceeeeccCCCCCC-hhHHHHHHHHHHHHHHHhhcC-CCCchhhHHHHHHHhhhhhhhhhhHHHHH-----HHHHHHHH
Q 000667 932 NGGIFKYLEDPVVGD-AENNLSSALSCYEEAVKALGG-LPTVSAELQSVLKKKGWVCNEMGRIRLER-----KEMEKGEH 1004 (1363)
Q Consensus 932 ~GgiFkyL~~~~~~D-~E~NL~~AieCYeeAl~al~~-lp~~~ae~~svlkr~GnV~NELG~~rle~-----~~lkKSe~ 1004 (1363)
+|..|.|+.+-..++ .+.....|.++|++|..+... ||...+- |+|-+.| .++|+++. +-++-|..
T Consensus 124 KGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~Pi------rLgLaLN-~SVF~yEI~~~~~~A~~lAk~ 196 (244)
T smart00101 124 KGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPI------RLGLALN-FSVFYYEILNSPDRACNLAKQ 196 (244)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHH------HHHHHHH-HHHHHHHHcCCHHHHHHHHHH
Confidence 599999999665553 456789999999999988543 4444432 4555555 47887774 66777888
Q ss_pred HHHHHHHHhhhccc
Q 000667 1005 AFANAINAFKEVSD 1018 (1363)
Q Consensus 1005 aF~~aI~aF~eV~D 1018 (1363)
||.+||..+...++
T Consensus 197 afd~Ai~~ld~l~e 210 (244)
T smart00101 197 AFDEAIAELDTLGE 210 (244)
T ss_pred HHHHHHHHhhccCh
Confidence 99999888876654
No 62
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=66.02 E-value=45 Score=41.41 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHH-----------------------HHHHhhh---hhhhhhhHHHHHHHHHHHH
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQS-----------------------VLKKKGW---VCNEMGRIRLERKEMEKGE 1003 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~s-----------------------vlkr~Gn---V~NELG~~rle~~~lkKSe 1003 (1363)
|..+||+||+.|+++ .+++|.. .+.-+-| +|--||-+|..-..+.+|+
T Consensus 379 Nt~AAi~sYRrAvdi------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDI------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred ccHHHHHHHHHHHhc------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHH
Confidence 889999999999976 2333332 2221211 3444555565556677788
Q ss_pred HHHHHHHHHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000667 1004 HAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1075 (1363)
Q Consensus 1004 ~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yy 1075 (1363)
.||-.||.+=.. -|.++--||.-...- ..+++|.++ |++=++++
T Consensus 453 KCykrai~~~dt-------------e~~~l~~LakLye~l-----------~d~~eAa~~----yek~v~~~ 496 (559)
T KOG1155|consen 453 KCYKRAILLGDT-------------EGSALVRLAKLYEEL-----------KDLNEAAQY----YEKYVEVS 496 (559)
T ss_pred HHHHHHHhcccc-------------chHHHHHHHHHHHHH-----------HhHHHHHHH----HHHHHHHH
Confidence 888777754332 233333444432222 356677777 88877766
No 63
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=64.26 E-value=34 Score=38.40 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=20.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000667 982 KGWVCNEMGRIRLERKEMEKGEHAFANAINA 1012 (1363)
Q Consensus 982 ~GnV~NELG~~rle~~~lkKSe~aF~~aI~a 1012 (1363)
+++.++.||..+++++.+.+|+.+|.+++..
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 3444556666666667777777777777664
No 64
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.68 E-value=12 Score=43.62 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheec
Q 000667 948 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1027 (1363)
Q Consensus 948 E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInC 1027 (1363)
+.+-..|+.+|++|++.- |+...+|-. ++-|+..||.+- .|+..++.|| ....++.=.||
T Consensus 94 ~~~Y~eAv~kY~~AI~l~---P~nAVyycN----RAAAy~~Lg~~~-------~AVkDce~Al------~iDp~yskay~ 153 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELD---PTNAVYYCN----RAAAYSKLGEYE-------DAVKDCESAL------SIDPHYSKAYG 153 (304)
T ss_pred hhhHHHHHHHHHHHHhcC---CCcchHHHH----HHHHHHHhcchH-------HHHHHHHHHH------hcChHHHHHHH
Confidence 456678999999999774 777766543 444555555332 2333333333 23445555566
Q ss_pred chhhHHHHH
Q 000667 1028 NLGHGRRAL 1036 (1363)
Q Consensus 1028 NLG~lrR~L 1036 (1363)
-||..+-.+
T Consensus 154 RLG~A~~~~ 162 (304)
T KOG0553|consen 154 RLGLAYLAL 162 (304)
T ss_pred HHHHHHHcc
Confidence 666666665
No 65
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=63.39 E-value=46 Score=36.44 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHH
Q 000667 948 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIR 993 (1363)
Q Consensus 948 E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~r 993 (1363)
..+...|++||++|++.- |. ...++..++|+..++|...
T Consensus 159 ~G~~~~A~~~~~~al~~~---P~----~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELD---PD----DPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp CCHHHHHHHHHHHHHHH----TT-----HHHHHHHHHHHCTTCHHH
T ss_pred cCCHHHHHHHHHHHHHcC---CC----CHHHHHHHHHHHHHCCChH
Confidence 346788999999999774 32 3346777899888888653
No 66
>PF10505 NARG2_C: NMDA receptor-regulated gene protein 2 C-terminus; InterPro: IPR019535 The transition of neuronal cells from pre-cursor to mature state is regulated by the N-methyl-d-aspartate (NMDA) receptor, a glutamate-gated ion channel that is permeable to Ca2+. NMDA receptors probably mediate this activity by permitting expression of NARG2. NARG2 (NMDA receptor-regulated gene protein 2) is transiently expressed, being a regulatory protein that is present in the nucleus of dividing cells and then down-regulated as progenitors exit the cell cycle and begin to differentiate. NARG2 contains repeats of (S/T)PXX, (11 in mouse, 6 in human), a putative DNA-binding motif that is found in many gene-regulatory proteins including Kruppel, Hunchback and Antennapedi [].
Probab=60.67 E-value=57 Score=36.70 Aligned_cols=130 Identities=16% Similarity=0.221 Sum_probs=90.5
Q ss_pred Eeeeec----ccceeccccccccc---CC----CceeEEEeeccc------ccccCchhhHHHHHHhhhcCCCcEEEEEe
Q 000667 212 LFWQFH----NFRMLLGSDLLLFS---NE----KYVAVSLHLWDV------ARQVTPLTWLEAWLDNVMASVPELAICYH 274 (1363)
Q Consensus 212 l~WtF~----di~MLVGSDmPIFg---~~----~~paVSLrLrD~------skpIn~lTgLD~WLDNlM~NVPElamCyH 274 (1363)
.+|+|+ +++|||-+.++-+. +. ++-.|++..+-. -+.+|.-+.+..|+.-.+-.--. ..|.|
T Consensus 17 ~lw~L~~~~~~~~lLvR~~v~~~~~~~~~~~~~~~~pv~v~~KlEyq~~~G~E~lT~sEl~~~W~~~~Lr~~s~-~~~~R 95 (220)
T PF10505_consen 17 KLWSLGDKDSDLLLLVRCSVDGVEDSKSDRKLGCQFPVSVLPKLEYQPEYGAEILTKSELCKLWTESKLRPNSS-LLRAR 95 (220)
T ss_pred EEEEcCCCCcceEEEEEeccceeeecccCCCccceeeEEeeeccccccccchhhcCHHHHHHHHHHHhhCCCCe-eEEEE
Confidence 489999 99999999999885 11 122344433222 24567778999999988776544 44888
Q ss_pred eccceeceeeecccccc--cccCCCCCCCCCcChhHHHhhHHHHHHHHhhhccCCCceEEEEeeCCCCeEEeeccc
Q 000667 275 ENGVVQGYELLKTDDIF--LLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLS 348 (1363)
Q Consensus 275 ~nGIVQ~YEliKTeDIp--~leg~s~~g~~~F~P~vV~~~A~nIL~FLksNCtkdGhTYWL~K~~~edvVkLYDLT 348 (1363)
.|-. .-+++--|-++ .+.. ....|.|.-..++-.+|..||+.--.=.+|.|.|-...++.-|-+|=-+
T Consensus 96 I~~~--t~~vl~~Ek~~~~~l~~----~~~~~~p~~~~~~L~~L~~~Lk~L~~L~pG~YLLrh~~~d~f~~i~k~~ 165 (220)
T PF10505_consen 96 INAW--TSEVLSIEKLSMESLEE----ELCRFYPIKSLNILSHLHEFLKKLSSLQPGSYLLRHTPGDSFVLIYKSS 165 (220)
T ss_pred Eccc--cCceeEEEecCHHHHHH----HhhhcCCCcHHHHHHHHHHHHHHHcCCCCCcEEEEecCCCCcEEEEEcC
Confidence 8765 33444444333 2211 1367889888899999999999988888999999999888877665433
No 67
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=60.61 E-value=25 Score=42.99 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=66.7
Q ss_pred CcccccceeeeccCCCCCChhHHHHHHHHHHHHHHHhhcCCCCchh-hHHHHHHHhhhhhhhhhhHHH----------H-
Q 000667 928 PKVKNGGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSA-ELQSVLKKKGWVCNEMGRIRL----------E- 995 (1363)
Q Consensus 928 ~~~~~GgiFkyL~~~~~~D~E~NL~~AieCYeeAl~al~~lp~~~a-e~~svlkr~GnV~NELG~~rl----------e- 995 (1363)
+..--|.+||-++ . .-.|+-|-..-|...- +.+.. .-.-.+-.+||||.+=|+..= +
T Consensus 97 ssgNLGNtlKv~G--~-------fdeA~~cc~rhLd~ar--eLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ 165 (639)
T KOG1130|consen 97 SSGNLGNTLKVKG--A-------FDEALTCCFRHLDFAR--ELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNA 165 (639)
T ss_pred ccccccchhhhhc--c-------cchHHHHHHHHhHHHH--HHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccH
Confidence 3445688999888 3 3334555444443321 11222 122356679999999998721 1
Q ss_pred --HHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHH
Q 000667 996 --RKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE 1038 (1363)
Q Consensus 996 --~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAe 1038 (1363)
..-|..|..+|..-+..-++..|..-..=.+-|||+.|-+|+.
T Consensus 166 ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGd 210 (639)
T KOG1130|consen 166 EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGD 210 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeecc
Confidence 2667778888888888888999999999999999988776654
No 68
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=59.82 E-value=19 Score=30.88 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 000667 988 EMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLE 1067 (1363)
Q Consensus 988 ELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~e 1067 (1363)
.+|..+++.+.+.+|+.+|+.+++.+ ++- ...+..+|.....+ +.|.+|++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~------P~~-------~~a~~~lg~~~~~~-----------g~~~~A~~~---- 53 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD------PDN-------PEAWYLLGRILYQQ-----------GRYDEALAY---- 53 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS------TTH-------HHHHHHHHHHHHHT-----------T-HHHHHHH----
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC------CCC-------HHHHHHHHHHHHHc-----------CCHHHHHHH----
Confidence 47888899999999999999999887 222 24556666655544 456666666
Q ss_pred HHHHHHH
Q 000667 1068 YCESLRY 1074 (1363)
Q Consensus 1068 Y~eAL~y 1074 (1363)
|.++++.
T Consensus 54 ~~~a~~~ 60 (65)
T PF13432_consen 54 YERALEL 60 (65)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766643
No 69
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=59.66 E-value=40 Score=44.78 Aligned_cols=58 Identities=9% Similarity=-0.083 Sum_probs=45.1
Q ss_pred CCccchhHHHHHHHHHHhhcccccccchHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHhcccc
Q 000667 373 RSDSLFSLGTLLYRIAHRLSLSMASDNRAKCARFIKKCLDFLDEPDHLVMRAFAHEQFARLILNYEE 439 (1363)
Q Consensus 373 ~n~ft~~vA~LlYRVA~rm~~s~~~~~~~~~~~LL~nCL~LLd~~~hp~I~Asa~e~lA~L~L~~~~ 439 (1363)
.+||..=.-...|--|.+.+...+.. .++.+|+.|+++=+.. +. +++.||.+|+.-++
T Consensus 36 ~~~~~~~~~~~~f~~a~~~~~~Gd~~---~A~~~l~~Al~~dP~n--~~----~~~~LA~~yl~~g~ 93 (987)
T PRK09782 36 LSDYRHFVIYPRLDKALKAQKNNDEA---TAIREFEYIHQQVPDN--IP----LTLYLAEAYRHFGH 93 (987)
T ss_pred CchHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHHHHHhCCCC--HH----HHHHHHHHHHHCCC
Confidence 45677777788888888888766654 7899999999987766 43 44999999998776
No 70
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=59.13 E-value=31 Score=31.58 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=25.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000667 984 WVCNEMGRIRLERKEMEKGEHAFANAINAF 1013 (1363)
Q Consensus 984 nV~NELG~~rle~~~lkKSe~aF~~aI~aF 1013 (1363)
.++..+|..+++++.+.+|...|..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 32 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY 32 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356778888999999999999999999765
No 71
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=58.24 E-value=37 Score=38.11 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHhhh----cccccc
Q 000667 947 AENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERK-EMEKGEHAFANAINAFKE----VSDYTN 1021 (1363)
Q Consensus 947 ~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~-~lkKSe~aF~~aI~aF~e----V~D~tN 1021 (1363)
.|.++..|.+||..|...+. ... .....+++.+|.++|.-.++++ ....|...+.+|...+.. ..++++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~---~~~---~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN---SLD---PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh---cCC---cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 46788999999999997651 112 2345789999999999999998 899999999999999866 234444
Q ss_pred eeheecchhhHHHHHHHHHHh
Q 000667 1022 IILINCNLGHGRRALAEEMVS 1042 (1363)
Q Consensus 1022 iaLInCNLG~lrR~LAee~~s 1042 (1363)
+.=+ -...+|++|..+.+
T Consensus 79 ~~el---r~~iL~~La~~~l~ 96 (278)
T PF08631_consen 79 GSEL---RLSILRLLANAYLE 96 (278)
T ss_pred HHHH---HHHHHHHHHHHHHc
Confidence 4211 24567777775533
No 72
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=57.89 E-value=9.9 Score=28.85 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=27.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000667 984 WVCNEMGRIRLERKEMEKGEHAFANAINAFK 1014 (1363)
Q Consensus 984 nV~NELG~~rle~~~lkKSe~aF~~aI~aF~ 1014 (1363)
++|..+|.++...+.+.+|..+|.++++.-.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999998653
No 73
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=57.69 E-value=2e+02 Score=33.85 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=39.2
Q ss_pred hhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 000667 972 SAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDY 1019 (1363)
Q Consensus 972 ~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~ 1019 (1363)
.-|+.+|+=.+|-++-+++...+..+.++.|..+|-.|--+|+-+.+.
T Consensus 109 ~fE~~~vLfn~aa~~s~~A~~~~~~e~~K~A~~~l~~AAG~f~~l~~~ 156 (346)
T cd09247 109 RFELGMVLFLYGAALRERASEVLPTEDFKEAATHLRRAAGVFEFLAHD 156 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 447777888888888888876555478999999999999999998775
No 74
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=57.20 E-value=2.4e+02 Score=33.88 Aligned_cols=167 Identities=12% Similarity=0.101 Sum_probs=100.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHH---H-HHHHHHHHHHHHHHHHHHhhhccc
Q 000667 943 VVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIR---L-ERKEMEKGEHAFANAINAFKEVSD 1018 (1363)
Q Consensus 943 ~~~D~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~r---l-e~~~lkKSe~aF~~aI~aF~eV~D 1018 (1363)
-.+|+-.-...+.+++++|+..+ .+.....++..++..+..+|-.|.-|- - ..++.++=.+.++.-+....- ..
T Consensus 139 ~f~dAr~vF~~~~~~l~~A~~yf-~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~-~~ 216 (371)
T PF12309_consen 139 DFDDAREVFLNGQKWLNKAKEYF-VLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNP-QY 216 (371)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHc-cccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCH-HH
Confidence 45677778889999999999988 789999999999999999999888772 1 125566666666665543221 11
Q ss_pred ccc-eeheecchhhHHHHHHHHHHhhhhh---hhhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 000667 1019 YTN-IILINCNLGHGRRALAEEMVSKVES---LKIHTIFQN--MYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSV 1092 (1363)
Q Consensus 1019 ~tN-iaLInCNLG~lrR~LAee~~sk~~~---~ke~~~~~~--~ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~ 1092 (1363)
+.+ +-=|..-||..+.-+.+.+..+... -.....++. -+|+.+..|-..|..=++-|...+ -...
T Consensus 217 y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~---------~~~~ 287 (371)
T PF12309_consen 217 YLNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPD---------SGKL 287 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCc---------cccC
Confidence 111 1112333444444444433333220 111111111 133333333333777777776322 1234
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhcccc
Q 000667 1093 SNSLRMEVHTQFAHTYLRLGMLLAREDT 1120 (1363)
Q Consensus 1093 ~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ 1120 (1363)
++.+=+++.--+-.+||.+|+|+-...+
T Consensus 288 ~~~~~~d~~~~~l~a~f~~arl~~K~~~ 315 (371)
T PF12309_consen 288 PEKLDEDELRPYLYAYFHIARLYSKLIT 315 (371)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHccccC
Confidence 5556667777788999999999987755
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=56.54 E-value=16 Score=40.50 Aligned_cols=51 Identities=10% Similarity=0.171 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000667 951 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKE 1015 (1363)
Q Consensus 951 L~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~e 1015 (1363)
+..|++.|++|+..- |.. .|+++.||.++++...+++|+.+|.+++.....
T Consensus 130 ~~~A~~~~~~al~~~---p~~-----------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 130 YDRAEEAARRALELN---PDD-----------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHHHHHhhC---CCC-----------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 456777777777542 222 688899999999999999999999999987654
No 76
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=56.42 E-value=64 Score=30.93 Aligned_cols=29 Identities=3% Similarity=-0.105 Sum_probs=20.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000667 985 VCNEMGRIRLERKEMEKGEHAFANAINAF 1013 (1363)
Q Consensus 985 V~NELG~~rle~~~lkKSe~aF~~aI~aF 1013 (1363)
+...+|..++..+...+|...|.+++..+
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 47 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD 47 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 34556666777777888888888887753
No 77
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=56.26 E-value=34 Score=37.83 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=37.7
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000667 946 DAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFK 1014 (1363)
Q Consensus 946 D~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~ 1014 (1363)
|....+..||+=|++|+.+ ...+-..+--+||++-++|.+.=. -.++...|++|..-|+
T Consensus 46 es~~miedAisK~eeAL~I-------~P~~hdAlw~lGnA~ts~A~l~~d---~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 46 ESKKMIEDAISKFEEALKI-------NPNKHDALWCLGNAYTSLAFLTPD---TAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHH
Confidence 4556778888888888877 345556777899999999986422 2444555555555554
No 78
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=56.24 E-value=2.7e+02 Score=33.94 Aligned_cols=67 Identities=25% Similarity=0.228 Sum_probs=48.7
Q ss_pred hhhHHHHHHHhhhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHhhhcccccceeheecc-----------hhhHHHHHHH
Q 000667 972 SAELQSVLKKKGWVCNEMGRI--RLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN-----------LGHGRRALAE 1038 (1363)
Q Consensus 972 ~ae~~svlkr~GnV~NELG~~--rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCN-----------LG~lrR~LAe 1038 (1363)
.-|..+|+=.+|=.+-.||.. |-..+-+|.|..+|..|..+|.-+.++ +.+.. |..+|-+-|+
T Consensus 102 ~FEKasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~----~~~~Ps~Dms~~~L~~L~~LMLAQAQ 177 (384)
T cd09248 102 AFEKGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFSLLREN----FSNAPSPDMSTASLSMLEQLMVAQAQ 177 (384)
T ss_pred HHHHHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----hccCCCCcCCHHHHHHHHHHHHHHHH
Confidence 346777777888888777765 344688999999999999999999986 22222 4566767777
Q ss_pred HHHh
Q 000667 1039 EMVS 1042 (1363)
Q Consensus 1039 e~~s 1042 (1363)
|..=
T Consensus 178 EC~~ 181 (384)
T cd09248 178 ECIF 181 (384)
T ss_pred HHHH
Confidence 5443
No 79
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=55.42 E-value=26 Score=42.15 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=38.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHH
Q 000667 984 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRAL 1036 (1363)
Q Consensus 984 nV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~L 1036 (1363)
.++..+|..++..+.+.+|..+|.+++..+....-..+++.+++.+|+.-.+.
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHH
Confidence 34566777888888999999999999987765555556666666666655543
No 80
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=55.42 E-value=8.8 Score=42.68 Aligned_cols=77 Identities=26% Similarity=0.398 Sum_probs=58.5
Q ss_pred cccceeeeccCCCCCChh-HHHHHHHHHHHHHHHhhcC--CCCchhhHHHHHHHhhhhhhhhhhHHHHH-----HHHHHH
Q 000667 931 KNGGIFKYLEDPVVGDAE-NNLSSALSCYEEAVKALGG--LPTVSAELQSVLKKKGWVCNEMGRIRLER-----KEMEKG 1002 (1363)
Q Consensus 931 ~~GgiFkyL~~~~~~D~E-~NL~~AieCYeeAl~al~~--lp~~~ae~~svlkr~GnV~NELG~~rle~-----~~lkKS 1002 (1363)
-+|.-|.||.+..+|+.- ..-..|++-|.+|-.+..+ .|+++. |+|-+.| .++||++. +-+.-|
T Consensus 125 MKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA~teLpPT~Pi-------rLGLALN-fSVFyYEIlnspdkAC~lA 196 (268)
T COG5040 125 MKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIATTELPPTHPI-------RLGLALN-FSVFYYEILNSPDKACHLA 196 (268)
T ss_pred ecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHhhccCCCCCch-------hhhheec-ceeeeeecccCcHHHHHHH
Confidence 359999999998888864 4567899999999988644 456654 6788877 57888774 677778
Q ss_pred HHHHHHHHHHhhh
Q 000667 1003 EHAFANAINAFKE 1015 (1363)
Q Consensus 1003 e~aF~~aI~aF~e 1015 (1363)
..+|.+||.-...
T Consensus 197 KqaFDeAI~ELDt 209 (268)
T COG5040 197 KQAFDEAISELDT 209 (268)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888875543
No 81
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.40 E-value=16 Score=24.62 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=25.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000667 984 WVCNEMGRIRLERKEMEKGEHAFANAINAF 1013 (1363)
Q Consensus 984 nV~NELG~~rle~~~lkKSe~aF~~aI~aF 1013 (1363)
.+++-+|..++..+++.++..+|..+|...
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 467788889999999999999999998754
No 82
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.15 E-value=1.7e+02 Score=34.14 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhcchhhH
Q 000667 1154 DAIREALSLYESMGDLRK 1171 (1363)
Q Consensus 1154 Dai~eAL~lyeslGpL~k 1171 (1363)
+.+-++.+-||+..+|.+
T Consensus 250 e~fte~vkefDsisrLD~ 267 (288)
T KOG1586|consen 250 EKFTEVVKEFDSISRLDQ 267 (288)
T ss_pred HHHHHHHHhhhccchHHH
Confidence 778888999999988876
No 83
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=54.20 E-value=17 Score=27.32 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=25.6
Q ss_pred hhhhhhhHhhhhchHHHHHHHHHHHHHhhh
Q 000667 647 ESYLALGQAYKEDGQLHQALKTVELACSVY 676 (1363)
Q Consensus 647 esylalg~ayked~ql~~~lk~velac~vy 676 (1363)
+.|..||.+|.+.|++.+|++..+-|...+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 568899999999999999999999887664
No 84
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=54.14 E-value=69 Score=32.62 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc----ccceeheec
Q 000667 952 SSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD----YTNIILINC 1027 (1363)
Q Consensus 952 ~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D----~tNiaLInC 1027 (1363)
..|+..|++|+.. .+. ........-.+|..+..||+ ..+|+..|.+++..|-.-.. .+.+|+...
T Consensus 18 ~~Ai~~Y~~Al~~--gL~--~~~~~~a~i~lastlr~LG~-------~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 18 EEAIPLYRRALAA--GLS--GADRRRALIQLASTLRNLGR-------YDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHHHHHHHc--CCC--chHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4699999999964 222 22333444455666665555 56777777777766532111 122456666
Q ss_pred chhhHHHHHHH
Q 000667 1028 NLGHGRRALAE 1038 (1363)
Q Consensus 1028 NLG~lrR~LAe 1038 (1363)
|+|+-..++..
T Consensus 87 ~~gr~~eAl~~ 97 (120)
T PF12688_consen 87 NLGRPKEALEW 97 (120)
T ss_pred HCCCHHHHHHH
Confidence 77776665555
No 85
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=50.57 E-value=2.8e+02 Score=32.81 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=38.4
Q ss_pred hhhHHHHHHHhhhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHhhhccccc
Q 000667 972 SAELQSVLKKKGWVCNEMGRI--RLERKEMEKGEHAFANAINAFKEVSDYT 1020 (1363)
Q Consensus 972 ~ae~~svlkr~GnV~NELG~~--rle~~~lkKSe~aF~~aI~aF~eV~D~t 1020 (1363)
--|+.+|+=.+|=.+-.||.. |-..+.+|+|..+|..|..+|+-+.|..
T Consensus 107 ~fEka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~e~~ 157 (353)
T cd09246 107 HFEKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHLRDKV 157 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 336667777777777777765 3345889999999999999999999873
No 86
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=50.19 E-value=1.2e+02 Score=41.04 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=40.5
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccccee
Q 000667 977 SVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNII 1023 (1363)
Q Consensus 977 svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNia 1023 (1363)
.=.|.+|-..-=+|-++|--..|..|...|.+||...+.+.|+-=.|
T Consensus 236 ~~~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a 282 (1185)
T PF08626_consen 236 SRKRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLA 282 (1185)
T ss_pred cchhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhH
Confidence 44567788888889999999999999999999999999999986544
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=49.28 E-value=1.8e+02 Score=36.78 Aligned_cols=138 Identities=20% Similarity=0.177 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc---cceehe
Q 000667 949 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDY---TNIILI 1025 (1363)
Q Consensus 949 ~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~---tNiaLI 1025 (1363)
-++...++-+|++++..-...-...+...-.|-.||-+ +....+.+|..+|.+||+-- -+|+ -|-|++
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~-------Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac 401 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEA-------FKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAAC 401 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHH-------HhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHH
Confidence 45677777788887775333334445555555555554 44556667888888877632 2221 244444
Q ss_pred ecchhhHHHHHHH-HHHhhhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHH
Q 000667 1026 NCNLGHGRRALAE-EMVSKVESLKIHTIFQNM-YKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQ 1103 (1363)
Q Consensus 1026 nCNLG~lrR~LAe-e~~sk~~~~ke~~~~~~~-ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~q 1103 (1363)
|-+||+.-++|+. ...-+.. ...+..+ .+=+...+-.+|.+|++.|.++. +. |.=..+
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~----p~~~kgy~RKg~al~~mk~ydkAleay~eal--------e~--------dp~~~e 461 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELD----PNFIKAYLRKGAALRAMKEYDKALEAYQEAL--------EL--------DPSNAE 461 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hc--------CchhHH
Confidence 4455555555554 1111211 0111112 22233444556999999998887 22 223466
Q ss_pred HHHHHHHHHHhh
Q 000667 1104 FAHTYLRLGMLL 1115 (1363)
Q Consensus 1104 lA~Tyl~LG~LL 1115 (1363)
+..-|.+-.+++
T Consensus 462 ~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 462 AIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHh
Confidence 777777776665
No 88
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=47.82 E-value=23 Score=26.86 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=25.7
Q ss_pred hhhhhhhHhhhhchHHHHHHHHHHHHHhh
Q 000667 647 ESYLALGQAYKEDGQLHQALKTVELACSV 675 (1363)
Q Consensus 647 esylalg~ayked~ql~~~lk~velac~v 675 (1363)
++|..+|++|..-|++.+|++..+.+..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999888765
No 89
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=47.59 E-value=30 Score=42.46 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=24.9
Q ss_pred HHHHHHHHHH----HhhhhhhhhhhhccccccchhhHHHHHH
Q 000667 1068 YCESLRYYRA----AKLQLNSLVEEAGSVSNSLRMEVHTQFA 1105 (1363)
Q Consensus 1068 Y~eAL~yyg~----~K~~l~~~~~~~~~~~~~LwdeV~~qlA 1105 (1363)
+.++++-+|. ..+-...+..|+..-..+++.-+|.-|+
T Consensus 167 Llee~rk~G~~~g~~~~~~~kL~~E~~aPfR~~R~f~y~a~~ 208 (453)
T PLN03098 167 LQEEARKGGEDIGSSFRRDLKLISEVQAPFRGVRKFFYVAFT 208 (453)
T ss_pred HHHHHHHhCCccCCchhhHHHHHHHHhchHHHHHHHHHHHHH
Confidence 4555555554 4444456777888888888888777664
No 90
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=47.01 E-value=19 Score=27.83 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=24.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000667 984 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEV 1016 (1363)
Q Consensus 984 nV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV 1016 (1363)
.++|.||..+..+..+.+|+..+++++...+.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 356778888888888999999999999998877
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=46.82 E-value=34 Score=43.02 Aligned_cols=82 Identities=20% Similarity=0.290 Sum_probs=54.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 000667 985 VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETA 1064 (1363)
Q Consensus 985 V~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~a 1064 (1363)
|..-||++|.-.+++++|++||+.|+.+ .+|=.++..-||- +...- +.+-.|+++
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v------~Pnd~~lWNRLGA-------tLAN~-----------~~s~EAIsA- 486 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQV------KPNDYLLWNRLGA-------TLANG-----------NRSEEAISA- 486 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhc------CCchHHHHHHhhH-------HhcCC-----------cccHHHHHH-
Confidence 4556899998899999999999999974 4444445545553 22222 244467777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHH
Q 000667 1065 KLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGM 1113 (1363)
Q Consensus 1065 k~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl~LG~ 1113 (1363)
|.|||+. .| -|--|+-.++..|.+||+
T Consensus 487 ---Y~rALqL------------------qP-~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 487 ---YNRALQL------------------QP-GYVRVRYNLGISCMNLGA 513 (579)
T ss_pred ---HHHHHhc------------------CC-Ceeeeehhhhhhhhhhhh
Confidence 8877764 22 233445667777777775
No 92
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=46.47 E-value=1.6e+02 Score=35.92 Aligned_cols=150 Identities=18% Similarity=0.182 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhh----cCCCCchhhHHHHHHHh----hhhhhhhhhHHHHHHH-------HHHHHHHHHHHHHHhhhcc
Q 000667 953 SALSCYEEAVKAL----GGLPTVSAELQSVLKKK----GWVCNEMGRIRLERKE-------MEKGEHAFANAINAFKEVS 1017 (1363)
Q Consensus 953 ~AieCYeeAl~al----~~lp~~~ae~~svlkr~----GnV~NELG~~rle~~~-------lkKSe~aF~~aI~aF~eV~ 1017 (1363)
.+++-|++..+++ ++.+..+.++..+.++. ||.-+|+|++..+..- .+.+..-.++++++-
T Consensus 174 t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~---- 249 (464)
T KOG4637|consen 174 TAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGNSEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKAL---- 249 (464)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCchHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHH----
Confidence 4566666666664 33567778888999999 9999999999776432 233334444444443
Q ss_pred cccceeheecchhhHHHHHHH-HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---------
Q 000667 1018 DYTNIILINCNLGHGRRALAE-EMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVE--------- 1087 (1363)
Q Consensus 1018 D~tNiaLInCNLG~lrR~LAe-e~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~--------- 1087 (1363)
++.++.|+- .|+|-. +..++|-+.|... .-+..++-.|..+|...|.+..-|+-+..
T Consensus 250 ----~q~~~~~~e--nr~~e~m~l~k~~nslkp~l-------~~lr~~~d~y~~~l~~~~~~~k~l~~~l~~~~~~t~~q 316 (464)
T KOG4637|consen 250 ----IQALRSNSE--NRLCELMELDKAMNSLKPDL-------IQLRKIRDQYLVWLMIKGVRQKVLNLWLGMENEWTDAQ 316 (464)
T ss_pred ----HHHHhhhhh--hhhHHHHHHHHHHhhcCchH-------HHHHHHHHHHHHHHHhcCccHHHHHHHHhhhhcCCHHH
Confidence 333444432 244443 4555655555442 33444556699999988888777766554
Q ss_pred ----hhccccccchhhHHHHHHHHHHHHHHhhhcccc
Q 000667 1088 ----EAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1120 (1363)
Q Consensus 1088 ----~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ 1120 (1363)
|.+...| -.|+.+|.+-.+-.+-|.=|-+.++
T Consensus 317 y~l~et~~~~p-h~~e~~w~~~~a~r~kAe~llrg~~ 352 (464)
T KOG4637|consen 317 YLLCETDENLP-HNDEKTWRVRDANRDKAEELLRGKP 352 (464)
T ss_pred HHHhcccccCc-chhhhHhHHhhhhHHHHHHHhcCCC
Confidence 3344444 5688888888888887777766665
No 93
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=44.31 E-value=2.4e+02 Score=32.50 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=40.6
Q ss_pred hhHHHHHHHhhhhhhhhhhHHHH---HHHHHHHHHHHHHHHHHhhhccccccee
Q 000667 973 AELQSVLKKKGWVCNEMGRIRLE---RKEMEKGEHAFANAINAFKEVSDYTNII 1023 (1363)
Q Consensus 973 ae~~svlkr~GnV~NELG~~rle---~~~lkKSe~aF~~aI~aF~eV~D~tNia 1023 (1363)
-|+.+|+=.+|-++-.+|...+. .+.++.|..+|..|.-+|+-+.++..-.
T Consensus 108 fE~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~ 161 (345)
T cd09034 108 YELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLPL 161 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 36667777777777777776544 5889999999999999999999876544
No 94
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=44.04 E-value=25 Score=28.93 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=26.3
Q ss_pred hhhhhhhHhhhhchHHHHHHHHHHHHHhhh
Q 000667 647 ESYLALGQAYKEDGQLHQALKTVELACSVY 676 (1363)
Q Consensus 647 esylalg~ayked~ql~~~lk~velac~vy 676 (1363)
+.++.||++|.+-||+.+|.++.+-+....
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999998887654
No 95
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=43.42 E-value=5.5e+02 Score=30.90 Aligned_cols=65 Identities=29% Similarity=0.279 Sum_probs=47.7
Q ss_pred hHHHHHHHhhhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHhhhcccccceeheec-----------chhhHHHHHHHHH
Q 000667 974 ELQSVLKKKGWVCNEMGRI--RLERKEMEKGEHAFANAINAFKEVSDYTNIILINC-----------NLGHGRRALAEEM 1040 (1363)
Q Consensus 974 e~~svlkr~GnV~NELG~~--rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInC-----------NLG~lrR~LAee~ 1040 (1363)
|+.+|+=.+|=.+-.+|.. |...+.+|+|..+|..|..+|+-+.|+ +.+. =|..+|-+-|+|.
T Consensus 104 EkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~l~e~----~~~~ps~Dls~~~L~~L~~LmLAQAQEc 179 (350)
T cd09244 104 EKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYLREN----FSNAPSMDLSPEMLEALIKLMLAQAQEC 179 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6677777788777777766 444588999999999999999999986 2222 2456677777754
Q ss_pred Hh
Q 000667 1041 VS 1042 (1363)
Q Consensus 1041 ~s 1042 (1363)
.=
T Consensus 180 ~~ 181 (350)
T cd09244 180 VF 181 (350)
T ss_pred HH
Confidence 43
No 96
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=43.05 E-value=1e+02 Score=38.07 Aligned_cols=107 Identities=25% Similarity=0.325 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheec
Q 000667 948 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1027 (1363)
Q Consensus 948 E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInC 1027 (1363)
+-|+..|.+||-+|+.+= |..-.-..-+.=..+-|...||+.+-...-++.+...=..-|++
T Consensus 262 ~G~y~~A~E~Yteal~id---P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika--------------- 323 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNID---PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA--------------- 323 (486)
T ss_pred ccchhHHHHHHHHhhcCC---ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH---------------
Confidence 457899999999999773 66666666677777888888888764333333333222233332
Q ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000667 1028 NLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLN 1083 (1363)
Q Consensus 1028 NLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K~~l~ 1083 (1363)
-++|+.++..-.+ |.+.- ..|++|++.-+. ++=-+-++.+..+|.
T Consensus 324 ---ll~ra~c~l~le~---~e~AV---~d~~~a~q~~~s--~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 324 ---LLRRANCHLALEK---WEEAV---EDYEKAMQLEKD--CEIRRTLREAQLALK 368 (486)
T ss_pred ---HHHHHHHHHHHHH---HHHHH---HHHHHHHhhccc--cchHHHHHHHHHHHH
Confidence 4566666643333 33222 566677766433 333344444443333
No 97
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.95 E-value=3.9e+02 Score=30.09 Aligned_cols=112 Identities=15% Similarity=0.192 Sum_probs=70.2
Q ss_pred hhhhhhcccHHHHHHHHHHHhhhcc-hhh--HHHHHHHHHHHhhccccchhhhhccccccCCCCCCCchhhHHHHHhhhH
Q 000667 1143 KELRKHEVSANDAIREALSLYESMG-DLR--KQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASL 1219 (1363)
Q Consensus 1143 eeleK~~Isa~Dai~eAL~lyeslG-pL~--k~rAA~ah~rLAs~~~d~cLr~le~d~~~e~~~Kk~~~~~q~~kq~asL 1219 (1363)
+.++++.+ +.+.+.+.+.|..= |-. ..--.|-+.+-|-|||+. ..|...+ ..++....
T Consensus 84 ~kie~EL~---~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYl-aE~~~~~---------------~~~~~~~~ 144 (236)
T PF00244_consen 84 KKIEDELI---DICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYL-AEFDSGD---------------EKKEAAEK 144 (236)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHH-HHCTTHH---------------HHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccc-cccccch---------------hhHHHHHH
Confidence 55677766 88888888888751 111 001156677889999998 4444333 22445566
Q ss_pred HHHHHHHHhhhcCC---CCCchhHHHHHhhccchhhhhccccchHH-HHHHHHHHHHcc
Q 000667 1220 AERNWQKAMDFYGP---RSHPTMYLTILMERSDLSFRLSCFLHSNA-MLETALSCLLEG 1274 (1363)
Q Consensus 1220 Ae~nwqKA~k~Y~p---~~hp~~~L~IlmERsAL~~~lst~~~Snv-mLe~aL~~mLe~ 1274 (1363)
|...|++|+++-.. .+||. +|.+.++-|.++.-.......-+ +...|++-....
T Consensus 145 a~~aY~~A~~~a~~~L~~~~p~-rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 145 ALEAYEEALEIAKKELPPTHPL-RLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHH-HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred HHHhhhhHHHHHhcccCCCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 99999999998754 47775 57777777776644333333333 666666665443
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=41.33 E-value=1.3e+02 Score=40.45 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=103.0
Q ss_pred cceeeeccCCCCCChhHHHHHHHHHHHHHHHh--------------hcCCCCchhhHHHH--------HHHhhhhhhhhh
Q 000667 933 GGIFKYLEDPVVGDAENNLSSALSCYEEAVKA--------------LGGLPTVSAELQSV--------LKKKGWVCNEMG 990 (1363)
Q Consensus 933 GgiFkyL~~~~~~D~E~NL~~AieCYeeAl~a--------------l~~lp~~~ae~~sv--------lkr~GnV~NELG 990 (1363)
|.-|.||| ..-.|.. -...|-+||..|... +...+...+-...+ ....-|.|--.|
T Consensus 492 apaf~~LG-~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLG-QIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHH-HHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 44566666 4455666 667788888877643 11111111111111 122234444499
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHH-HHHhhh----hhhhhhhhhHHHHHHHHHHHH
Q 000667 991 RIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE-EMVSKV----ESLKIHTIFQNMYKQALETAK 1065 (1363)
Q Consensus 991 ~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAe-e~~sk~----~~~ke~~~~~~~ynkAle~ak 1065 (1363)
..+++..++.+|+..|..|+++- .+| +|.. --||..|-.++. +..-+. -.+.....+-.++.-+++++-
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d--PkD-~n~W---~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD--PKD-YNLW---LGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC--chh-HHHH---HHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 99999999999999999999862 223 2322 234555554444 111111 112222223356667889999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhcccc
Q 000667 1066 LEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1120 (1363)
Q Consensus 1066 ~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ 1120 (1363)
.+|.+||..|+.-= ---.+|-.++-.++.+|.||+-.+.....
T Consensus 644 GkYkeald~l~~ii------------~~~s~e~~~q~gLaE~~ir~akd~~~~gf 686 (1238)
T KOG1127|consen 644 GKYKEALDALGLII------------YAFSLERTGQNGLAESVIRDAKDSAITGF 686 (1238)
T ss_pred hhHHHHHHHHHHHH------------HHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999998644 12347888899999999999998876666
No 99
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=41.24 E-value=28 Score=29.88 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000667 948 ENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKE 1015 (1363)
Q Consensus 948 E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~e 1015 (1363)
+.+...|++.|+.|+... |. -..++..|+.+++....+.+|...|++.+..+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~---p~-----------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN---PD-----------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT---TT-----------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ccCHHHHHHHHHHHHHHC---CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 356788999999998664 22 2234556777788888888888888888776544
No 100
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=39.97 E-value=1.6e+02 Score=36.00 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 000667 1055 NMYKQALETAKLEYCESLRYYRAAK 1079 (1363)
Q Consensus 1055 ~~ynkAle~ak~eY~eAL~yyg~~K 1079 (1363)
..|..|... |.+|+.++.-++
T Consensus 222 gk~~~A~~~----Yerav~~l~~~~ 242 (397)
T KOG0543|consen 222 GKFKLAKKR----YERAVSFLEYRR 242 (397)
T ss_pred chHHHHHHH----HHHHHHHhhccc
Confidence 466666666 999999999666
No 101
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.72 E-value=56 Score=37.56 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=40.9
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHH
Q 000667 976 QSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE 1038 (1363)
Q Consensus 976 ~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAe 1038 (1363)
+.=...-+.++-+||..||++.....|..-+++||.. | +|+.+.+-=+++.|.-+++
T Consensus 28 ~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~-----D-Ps~~~a~~~~A~~Yq~~Ge 84 (250)
T COG3063 28 QTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH-----D-PSYYLAHLVRAHYYQKLGE 84 (250)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C-cccHHHHHHHHHHHHHcCC
Confidence 3445667889999999999999999999999999975 3 4555444444444444433
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=39.55 E-value=7.1e+02 Score=32.01 Aligned_cols=80 Identities=10% Similarity=0.074 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecch
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1029 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNL 1029 (1363)
.+..|..++++|+............. .+++++-+|..++.+..+.+|..++.+++...+...+. -.+..+.++
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~l 618 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPM------HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ-QQLQCLAML 618 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccH------HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-HHHHHHHHH
Confidence 34567777777776542110000000 11223346667777778889999999999988765533 234445555
Q ss_pred hhHHHHH
Q 000667 1030 GHGRRAL 1036 (1363)
Q Consensus 1030 G~lrR~L 1036 (1363)
|+++...
T Consensus 619 a~~~~~~ 625 (903)
T PRK04841 619 AKISLAR 625 (903)
T ss_pred HHHHHHc
Confidence 5554443
No 103
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=39.34 E-value=9.2e+02 Score=33.82 Aligned_cols=141 Identities=17% Similarity=0.100 Sum_probs=62.6
Q ss_pred Hhhhcccccceeheec----chhhHHHHHHH--HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000667 1012 AFKEVSDYTNIILINC----NLGHGRRALAE--EMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSL 1085 (1363)
Q Consensus 1012 aF~eV~D~tNiaLInC----NLG~lrR~LAe--e~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K~~l~~~ 1085 (1363)
.-+.|.-..||-.|.. ++.+..+++++ .-.++.+..|..+ +....||+.|...|-+|-..+..+.+-+.-+
T Consensus 1520 I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~a---e~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a 1596 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQA---EDVVEALEEADVAQGEAQDAIQGADRDIRLA 1596 (1758)
T ss_pred HHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3455666677755543 33444444444 2222222222222 5556677776666666666655554433333
Q ss_pred hhhhccccccchhhHHHHHHHHHHHHHHhhhcccchhhhhcccccccCCCCcccchhhhhhhhcccHHHHHHHHHHHhhh
Q 000667 1086 VEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYES 1165 (1363)
Q Consensus 1086 ~~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~~Isa~Dai~eAL~lyes 1165 (1363)
.+..+++-..++- --.+.++++..+.+-....+..+.-+... ..+.++++|++=||...-++|-...+-
T Consensus 1597 ~~~l~kv~~~t~~-----aE~~~~~a~q~~~eL~~~~e~lk~~~~qn------s~~A~~a~~~a~sa~~~A~~a~q~~~~ 1665 (1758)
T KOG0994|consen 1597 QQLLAKVQEETAA-----AEKLATSATQQLGELETRMEELKHKAAQN------SAEAKQAEKTAGSAKEQALSAEQGLEI 1665 (1758)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222111100 00122333333333333222222111111 235566777766777666666666664
Q ss_pred c
Q 000667 1166 M 1166 (1363)
Q Consensus 1166 l 1166 (1363)
+
T Consensus 1666 l 1666 (1758)
T KOG0994|consen 1666 L 1666 (1758)
T ss_pred H
Confidence 3
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=38.61 E-value=50 Score=35.49 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000667 949 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFK 1014 (1363)
Q Consensus 949 ~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~ 1014 (1363)
.....++..|+.+++.- | .-+..|..||+.++....+.+|..+|++|++..-
T Consensus 53 ~~~~~~i~~l~~~L~~~---P-----------~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P 104 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN---P-----------QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG 104 (198)
T ss_pred hhHHHHHHHHHHHHHHC---C-----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33467778888888552 1 1234788999999999999999999999998763
No 105
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=38.55 E-value=4.8e+02 Score=30.91 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=38.1
Q ss_pred hhHHHHHHHhhhhhhhhhhHHH--HHHHHHHHHHHHHHHHHHhhhcccc
Q 000667 973 AELQSVLKKKGWVCNEMGRIRL--ERKEMEKGEHAFANAINAFKEVSDY 1019 (1363)
Q Consensus 973 ae~~svlkr~GnV~NELG~~rl--e~~~lkKSe~aF~~aI~aF~eV~D~ 1019 (1363)
-|+.+|+=.+|-.+..+|.... ..+.+|.|..+|..|..+|+-+.+.
T Consensus 104 fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~l~e~ 152 (348)
T cd09242 104 FEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQYINEN 152 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677777778888877776643 3589999999999999999988875
No 106
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=38.47 E-value=3.7e+02 Score=32.19 Aligned_cols=48 Identities=25% Similarity=0.213 Sum_probs=36.4
Q ss_pred hHHHHHHHhhhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 000667 974 ELQSVLKKKGWVCNEMGRI--RLERKEMEKGEHAFANAINAFKEVSDYTN 1021 (1363)
Q Consensus 974 e~~svlkr~GnV~NELG~~--rle~~~lkKSe~aF~~aI~aF~eV~D~tN 1021 (1363)
|+.+|+=.+|=.+-.||.. |-..+.+|+|..+|..|.-+|+.+.|+..
T Consensus 112 Eka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~ 161 (361)
T cd09239 112 EEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYP 161 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566666666666666654 33458899999999999999999998643
No 107
>PRK14574 hmsH outer membrane protein; Provisional
Probab=38.29 E-value=2.8e+02 Score=36.72 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhh
Q 000667 952 SSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGH 1031 (1363)
Q Consensus 952 ~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~ 1031 (1363)
..|+..|++|++.- |..++....++.=.||+ ....+|+.++++++ |+.|.-. +
T Consensus 51 ~~Al~~L~qaL~~~---P~~~~av~dll~l~~~~-----------G~~~~A~~~~eka~-------~p~n~~~------~ 103 (822)
T PRK14574 51 APVLDYLQEESKAG---PLQSGQVDDWLQIAGWA-----------GRDQEVIDVYERYQ-------SSMNISS------R 103 (822)
T ss_pred HHHHHHHHHHHhhC---ccchhhHHHHHHHHHHc-----------CCcHHHHHHHHHhc-------cCCCCCH------H
Confidence 37888888888664 55443333444444433 66777888888877 6555542 5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000667 1032 GRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLR 1073 (1363)
Q Consensus 1032 lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~ 1073 (1363)
.++++|.....+ ..|.+|++. |.++|+
T Consensus 104 ~llalA~ly~~~-----------gdyd~Aiel----y~kaL~ 130 (822)
T PRK14574 104 GLASAARAYRNE-----------KRWDQALAL----WQSSLK 130 (822)
T ss_pred HHHHHHHHHHHc-----------CCHHHHHHH----HHHHHh
Confidence 555556655544 356677777 777665
No 108
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=38.10 E-value=6.4e+02 Score=31.79 Aligned_cols=76 Identities=22% Similarity=0.164 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhhcccchhhhhcccccccCCCCcccchhhhhhhhcccHHHHHHHHHHHhhhcc-hhhHHHHHHHHHH
Q 000667 1102 TQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMG-DLRKQEAAYAYFQ 1180 (1363)
Q Consensus 1102 ~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~~Isa~Dai~eAL~lyeslG-pL~k~rAA~ah~r 1180 (1363)
-+=|.|+++||.+|-.|-. .+. -|...+.+|+.+|+..+ .-.++++.+...+
T Consensus 56 ~~ea~~~l~la~iL~~eT~---n~~------------------------~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~ 108 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETE---NLD------------------------LAETYLEKAILLCERHRLTDLKFRCQFLLAR 108 (608)
T ss_pred HHHHHHHHHHHHHHHHHcC---CHH------------------------HHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 5567889999999977654 111 13477889999999966 5557777765543
Q ss_pred HhhccccchhhhhccccccCCCCCCCchhhHHHHHhhhHHHHHHHHHhhhcCCC
Q 000667 1181 LACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPR 1234 (1363)
Q Consensus 1181 LAs~~~d~cLr~le~d~~~e~~~Kk~~~~~q~~kq~asLAe~nwqKA~k~Y~p~ 1234 (1363)
+. +.. ++.+ |.++.+++.+.+...
T Consensus 109 i~---~~~-------------------------~~~~--a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 109 IY---FKT-------------------------NPKA--ALKNLDKAIEDSETY 132 (608)
T ss_pred HH---Hhc-------------------------CHHH--HHHHHHHHHHHHhcc
Confidence 33 211 1222 788888888888774
No 109
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=37.43 E-value=4.1e+02 Score=31.43 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=37.9
Q ss_pred hHHHHHHHhhhhhhhhhhHHH--HHHHHHHHHHHHHHHHHHhhhccccccee
Q 000667 974 ELQSVLKKKGWVCNEMGRIRL--ERKEMEKGEHAFANAINAFKEVSDYTNII 1023 (1363)
Q Consensus 974 e~~svlkr~GnV~NELG~~rl--e~~~lkKSe~aF~~aI~aF~eV~D~tNia 1023 (1363)
|..+|+=.+|=.+-.||..-. ..+.+|+|..+|..|..+|+-+.++..-.
T Consensus 104 Eka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~~~~~~ 155 (355)
T cd09241 104 ERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQHLLPT 155 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 556666667766666665532 24789999999999999999999986544
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=37.37 E-value=1.3e+02 Score=30.64 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 000667 989 MGRIRLERKEMEKGEHAFANAINA 1012 (1363)
Q Consensus 989 LG~~rle~~~lkKSe~aF~~aI~a 1012 (1363)
+|...+..+.+.+|..+|..++..
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~ 53 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMA 53 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344445555566788888888754
No 111
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=37.12 E-value=6e+02 Score=32.87 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhhHHH-HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc--cceeheec
Q 000667 951 LSSALSCYEEAVKALGGLPTVSAELQS-VLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDY--TNIILINC 1027 (1363)
Q Consensus 951 L~~AieCYeeAl~al~~lp~~~ae~~s-vlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~--tNiaLInC 1027 (1363)
...|+++|+.+++....-|.....+.. .+.+ ||.. ++++.+.+|+..|++.+.....+.++ ..++.+|.
T Consensus 212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~-------l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl 283 (765)
T PRK10049 212 ADRALAQYDALEALWHDNPDATADYQRARIDR-------LGAL-LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL 283 (765)
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHH-------HHHH-HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 477999999998765322222112222 2222 4433 45567788888888877653221111 11455666
Q ss_pred chhhHHHHHHH
Q 000667 1028 NLGHGRRALAE 1038 (1363)
Q Consensus 1028 NLG~lrR~LAe 1038 (1363)
.+|+.-.++..
T Consensus 284 ~~g~~e~A~~~ 294 (765)
T PRK10049 284 KLHQPEKAQSI 294 (765)
T ss_pred hcCCcHHHHHH
Confidence 66665444443
No 112
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.33 E-value=1.5e+02 Score=28.63 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHH---HHHHHHHHh
Q 000667 1055 NMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFA---HTYLRLGML 1114 (1363)
Q Consensus 1055 ~~ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA---~Tyl~LG~L 1114 (1363)
..|.+|++. |.+||+++...+ ++...+.+..++. .-|+.=|.-
T Consensus 20 gny~eA~~l----Y~~ale~~~~ek-------------n~~~k~~i~~K~~~~a~~yl~RAE~ 65 (75)
T cd02680 20 GNAEEAIEL----YTEAVELCINTS-------------NETMDQALQTKLKQLARQALDRAEA 65 (75)
T ss_pred hhHHHHHHH----HHHHHHHHHHhc-------------ChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999 999999999855 7777777766664 656554433
No 113
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.84 E-value=1.6e+02 Score=29.50 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCchh----hHHHHHHHhhhh------hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000667 948 ENNLSSALSCYEEAVKALGGLPTVSA----ELQSVLKKKGWV------CNEMGRIRLERKEMEKGEHAFANAIN 1011 (1363)
Q Consensus 948 E~NL~~AieCYeeAl~al~~lp~~~a----e~~svlkr~GnV------~NELG~~rle~~~lkKSe~aF~~aI~ 1011 (1363)
+.+...|-+-|++++.++.. .... .+..+.+.-++. .-.|+..++....+.+|...|..++.
T Consensus 5 ~~~~~~a~~~y~~~~~~~~~--~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 5 QQQAEQASALYEQALQALQA--GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34566788889999888732 1112 234455544433 33444555566777777777777666
No 114
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.15 E-value=2.1e+02 Score=33.71 Aligned_cols=81 Identities=28% Similarity=0.279 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhhcccchhhhhcccccccCCCCcccchhhhhhhhcccHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Q 000667 1102 TQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQL 1181 (1363)
Q Consensus 1102 ~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~~Isa~Dai~eAL~lyeslGpL~k~rAA~ah~rL 1181 (1363)
|.-|-+|=.-|||+++.+.+++ +. |.+++|.-+|-=.|.+. -||.+--+-
T Consensus 68 fhAAKayEqaamLake~~klsE-------------------------vv---dl~eKAs~lY~E~Gspd--tAAmaleKA 117 (308)
T KOG1585|consen 68 FHAAKAYEQAAMLAKELSKLSE-------------------------VV---DLYEKASELYVECGSPD--TAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH-------------------------HH---HHHHHHHHHHHHhCCcc--hHHHHHHHH
Confidence 7778899999999999888662 24 88889988887777433 367766666
Q ss_pred hhccccchhhhhccccccCCCCCCCchhhHHHHHhhhHHHHHHHHHhhhcCCCCCchh
Q 000667 1182 ACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTM 1239 (1363)
Q Consensus 1182 As~~~d~cLr~le~d~~~e~~~Kk~~~~~q~~kq~asLAe~nwqKA~k~Y~p~~hp~~ 1239 (1363)
| +.+|.+ .|+. |..-||+|+.++...+.--|
T Consensus 118 a--------k~lenv-----~Pd~--------------AlqlYqralavve~~dr~~m 148 (308)
T KOG1585|consen 118 A--------KALENV-----KPDD--------------ALQLYQRALAVVEEDDRDQM 148 (308)
T ss_pred H--------HHhhcC-----CHHH--------------HHHHHHHHHHHHhccchHHH
Confidence 6 233333 2444 77778888888887765544
No 115
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=33.23 E-value=71 Score=42.62 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecc
Q 000667 949 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1028 (1363)
Q Consensus 949 ~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCN 1028 (1363)
.+...|+.+|++|++.- |. ..+...+|. .+.......+|+.+|.+|+... ++-+.++.|
T Consensus 590 Gr~~eAl~~~~~AL~l~---P~-----~~a~~~LA~-------~l~~lG~~deA~~~l~~AL~l~------Pd~~~a~~n 648 (987)
T PRK09782 590 GQPELALNDLTRSLNIA---PS-----ANAYVARAT-------IYRQRHNVPAAVSDLRAALELE------PNNSNYQAA 648 (987)
T ss_pred CCHHHHHHHHHHHHHhC---CC-----HHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHH
Confidence 35677888888888653 32 223334444 4444455567777777777663 222345556
Q ss_pred hhhHHHHHHH
Q 000667 1029 LGHGRRALAE 1038 (1363)
Q Consensus 1029 LG~lrR~LAe 1038 (1363)
+|..+....+
T Consensus 649 LG~aL~~~G~ 658 (987)
T PRK09782 649 LGYALWDSGD 658 (987)
T ss_pred HHHHHHHCCC
Confidence 6655544433
No 116
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=32.88 E-value=78 Score=27.50 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000667 949 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1012 (1363)
Q Consensus 949 ~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~a 1012 (1363)
.+...|++|++.++... |. --..+...|.+++..+.+.+|..+|+.++..
T Consensus 9 ~~~~~A~~~~~~~l~~~---p~-----------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 9 EDYEEALEVLERALELD---PD-----------DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CCHHHHHHHHHHHHHhC---cc-----------cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34567899999999663 22 3345667788888888899999999999854
No 117
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=32.80 E-value=3e+02 Score=25.00 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFAN 1008 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~ 1008 (1363)
+...|+..|+.+++.- |+.+ -.. ++.-||..++..+.+++|+..|.+
T Consensus 4 ~y~~Ai~~~~k~~~~~---~~~~--~~~-------~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 4 NYENAIKYYEKLLELD---PTNP--NSA-------YLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp -HHHHHHHHHHHHHHH---CGTH--HHH-------HHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHC---CCCh--hHH-------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4567888888888765 3211 112 222355555555566666666655
No 118
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.39 E-value=3.4e+02 Score=33.13 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=44.6
Q ss_pred HHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecc-------hhhHH
Q 000667 961 AVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN-------LGHGR 1033 (1363)
Q Consensus 961 Al~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCN-------LG~lr 1033 (1363)
|+++.. -+.-+-+.....|.-|| .+|.-+-++.|..+|.+||+. +-.|+-=-|.+|.| ||+.|
T Consensus 67 slK~da-~E~ep~E~Aen~KeeGN-------~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyR 136 (390)
T KOG0551|consen 67 SLKADA-EEGEPHEQAENYKEEGN-------EYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYR 136 (390)
T ss_pred Hhhhcc-ccCChHHHHHHHHHHhH-------HHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHH
Confidence 455541 13334465555665555 677889999999999999985 45555555666665 66667
Q ss_pred HHHHH
Q 000667 1034 RALAE 1038 (1363)
Q Consensus 1034 R~LAe 1038 (1363)
++|-.
T Consensus 137 s~l~D 141 (390)
T KOG0551|consen 137 SALND 141 (390)
T ss_pred HHHHH
Confidence 66655
No 119
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=31.69 E-value=4.2e+02 Score=27.56 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHhhhcccccceehe
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRI----RLERKEMEKGEHAFANAINAFKEVSDYTNIILI 1025 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~----rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLI 1025 (1363)
|=.+|++.-|.....-+. ...---+++.-|.+|.+++.. .+...-|.-|.+||.+++.....-
T Consensus 11 nhiKAL~iied~i~~h~~----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~--------- 77 (111)
T PF04781_consen 11 NHIKALEIIEDLISRHGE----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS--------- 77 (111)
T ss_pred CHHHHHHHHHHHHHHccC----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH---------
Confidence 334566666665544321 111126788889999999988 455688999999999998765543
Q ss_pred ecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 000667 1026 NCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAK 1065 (1363)
Q Consensus 1026 nCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak 1065 (1363)
++++-.||+...+. .+|+|++..||
T Consensus 78 ----A~~L~~la~~l~s~-----------~~Ykk~v~kak 102 (111)
T PF04781_consen 78 ----AHSLFELASQLGSV-----------KYYKKAVKKAK 102 (111)
T ss_pred ----HHHHHHHHHHhhhH-----------HHHHHHHHHHH
Confidence 67888888877776 69999998843
No 120
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=30.36 E-value=52 Score=24.42 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=21.8
Q ss_pred hhhhhhhHhhhhchHHHHHHHHHHHH
Q 000667 647 ESYLALGQAYKEDGQLHQALKTVELA 672 (1363)
Q Consensus 647 esylalg~ayked~ql~~~lk~vela 672 (1363)
|+++.+|.+|.+-|+..+|+++.+-.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56888999999999999999887643
No 121
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=29.20 E-value=8.2e+02 Score=28.99 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=36.3
Q ss_pred hHHHHHHHhhhhhhhhhhHH--HHHHHHHHHHHHHHHHHHHhhhcccccc
Q 000667 974 ELQSVLKKKGWVCNEMGRIR--LERKEMEKGEHAFANAINAFKEVSDYTN 1021 (1363)
Q Consensus 974 e~~svlkr~GnV~NELG~~r--le~~~lkKSe~aF~~aI~aF~eV~D~tN 1021 (1363)
|+.+|+=.+|=.+-.||..- -..+-+|+|..+|..|..+|+-+.++..
T Consensus 117 Eka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l~e~~~ 166 (346)
T cd09240 117 EKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHLKETVL 166 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56666666776666666552 2247799999999999999999999653
No 122
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.18 E-value=67 Score=35.53 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=61.3
Q ss_pred hHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-cccceeheecchhhHHHHHHHHHHhhhhhhhhhhh
Q 000667 974 ELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVS-DYTNIILINCNLGHGRRALAEEMVSKVESLKIHTI 1052 (1363)
Q Consensus 974 e~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~-D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~ 1052 (1363)
....|...++..+... .+-+...+..|...|--|+-.-+-.+ ++..+|.++-.++-++|-+.+....+
T Consensus 70 ~~~~i~~~i~~~~~~~--~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~--------- 138 (214)
T PF09986_consen 70 QKEKIKENISSRWKPR--DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEK--------- 138 (214)
T ss_pred HHHHHHHHHHhhcccC--CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHH---------
Confidence 5555666666666544 22224678889999999988877555 67788888888888888877744433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000667 1053 FQNMYKQALETAKLEYCESLRYYRA 1077 (1363)
Q Consensus 1053 ~~~~ynkAle~ak~eY~eAL~yyg~ 1077 (1363)
.++.+|++. |.+|+..-..
T Consensus 139 --~fl~~Al~~----y~~a~~~e~~ 157 (214)
T PF09986_consen 139 --RFLRKALEF----YEEAYENEDF 157 (214)
T ss_pred --HHHHHHHHH----HHHHHHhCcC
Confidence 688888888 8888765443
No 123
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=28.27 E-value=1.7e+02 Score=35.73 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000667 988 EMGRIRLERKEMEKGEHAFANAINAF 1013 (1363)
Q Consensus 988 ELG~~rle~~~lkKSe~aF~~aI~aF 1013 (1363)
|=|--|+.|+-+++|++||.+||.+.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~ 127 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVY 127 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccC
Confidence 44456788999999999999999874
No 124
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=27.86 E-value=1.5e+02 Score=25.76 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000667 989 MGRIRLERKEMEKGEHAFANAINAFKE 1015 (1363)
Q Consensus 989 LG~~rle~~~lkKSe~aF~~aI~aF~e 1015 (1363)
|...++.++.+.++..+++.+|..+-.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~ 27 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD 27 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc
Confidence 356678889999999999999998433
No 125
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.64 E-value=5.2e+02 Score=28.69 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-cccceeheecchhhHHHHHHH-----------HHHhhhhh
Q 000667 979 LKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVS-DYTNIILINCNLGHGRRALAE-----------EMVSKVES 1046 (1363)
Q Consensus 979 lkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~-D~tNiaLInCNLG~lrR~LAe-----------e~~sk~~~ 1046 (1363)
+.|.++...+.|+.|-. +...|..|+..|.... |...|+...-..|.+.+-+.. .+...+.+
T Consensus 21 l~K~~~~~~~ag~~~~~------a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~ 94 (200)
T cd07603 21 LLKLCNGMVDSGKTYVN------ANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQN 94 (200)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHh
Q 000667 1047 LKIHTIFQ-NMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGML 1114 (1363)
Q Consensus 1047 ~ke~~~~~-~~ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl~LG~L 1114 (1363)
+-..++-. .-..|-++-|...|..||.-|..-.+.=....+|++.. ..-+..-|..+++
T Consensus 95 F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K~~~~~Ea~~~---------L~~~Rk~f~~~sl 154 (200)
T cd07603 95 FVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSKPQEAEEATNI---------LTATRSCFRHTAL 154 (200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH---------HHHHHHHHHHHHH
No 126
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=27.51 E-value=1.9e+02 Score=39.09 Aligned_cols=73 Identities=18% Similarity=0.087 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecch
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1029 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNL 1029 (1363)
-++.+-.||-.|+.- .++...++-+.|+-|.=++..- +++.+.|..+|-+|++. .+|+|-.+|-|
T Consensus 434 slselswc~~~~~ek-------~mdva~~~~~e~~~~w~a~~~~--rK~~~~al~ali~alrl------d~~~apaf~~L 498 (1238)
T KOG1127|consen 434 SLSELSWCLPRALEK-------MMDVALLLECENSEFWVALGCM--RKNSALALHALIRALRL------DVSLAPAFAFL 498 (1238)
T ss_pred hhhHhhHHHHHhHHh-------hhhHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhc------ccchhHHHHHH
Confidence 356677788776633 4677888888888777666654 46799999999999875 57999999999
Q ss_pred hhHHHHHH
Q 000667 1030 GHGRRALA 1037 (1363)
Q Consensus 1030 G~lrR~LA 1037 (1363)
|+.||-.-
T Consensus 499 G~iYrd~~ 506 (1238)
T KOG1127|consen 499 GQIYRDSD 506 (1238)
T ss_pred HHHHHHHH
Confidence 99999765
No 127
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=27.40 E-value=9.4e+02 Score=27.17 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcc---cccceeheecchhhHHHHHHH
Q 000667 997 KEMEKGEHAFANAINAFKEVS---DYTNIILINCNLGHGRRALAE 1038 (1363)
Q Consensus 997 ~~lkKSe~aF~~aI~aF~eV~---D~tNiaLInCNLG~lrR~LAe 1038 (1363)
+.+-.+..+|.+|+..|-.-. |...|+-...++|...+-++.
T Consensus 33 ~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~ 77 (215)
T cd07604 33 LAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAA 77 (215)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 344567888888888887655 333466667777777777766
No 128
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=27.00 E-value=1.4e+02 Score=37.77 Aligned_cols=146 Identities=9% Similarity=0.054 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecch
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1029 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNL 1029 (1363)
+...|+.+|++|+..- |... .+++-||..+.....+.+|+.+|.+++... ++.+..+.++
T Consensus 299 ~~~eA~~~l~~al~l~---P~~~-----------~a~~~La~~l~~~G~~~eA~~~l~~al~~~------P~~~~~~~~~ 358 (656)
T PRK15174 299 QNEKAIPLLQQSLATH---PDLP-----------YVRAMYARALRQVGQYTAASDEFVQLAREK------GVTSKWNRYA 358 (656)
T ss_pred CHHHHHHHHHHHHHhC---CCCH-----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------ccchHHHHHH
Confidence 4567899999999652 2211 222335666666677788888888887742 2222333444
Q ss_pred hhHHHHHHHHHHhhhhhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhhhhccccccchhh-H
Q 000667 1030 GHGRRALAEEMVSKVESL----KIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQ----LNSLVEEAGSVSNSLRME-V 1100 (1363)
Q Consensus 1030 G~lrR~LAee~~sk~~~~----ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K~~----l~~~~~~~~~~~~~Lwde-V 1100 (1363)
|..+..+++...-. ..+ +.+ | ..+.+-++.|...|-+++.-++....+ ..-..++.+ .-+..|+. -
T Consensus 359 a~al~~~G~~deA~-~~l~~al~~~--P-~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~ 433 (656)
T PRK15174 359 AAALLQAGKTSEAE-SVFEHYIQAR--A-SHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSG-IERDEWERRA 433 (656)
T ss_pred HHHHHHCCCHHHHH-HHHHHHHHhC--h-hhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhccccc-CChHHHHHHH
Confidence 44444333311111 000 000 0 111122223334477777766554432 111222222 23335553 5
Q ss_pred HHHHHHHHHHHHHhhhcccc
Q 000667 1101 HTQFAHTYLRLGMLLAREDT 1120 (1363)
Q Consensus 1101 ~~qlA~Tyl~LG~LLqd~~~ 1120 (1363)
.|-+-.-.|-|--|=++++.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~ 453 (656)
T PRK15174 434 KWGYLADNFLLDWLECRGEQ 453 (656)
T ss_pred HhhHHHHHHHHHHHHhcccc
Confidence 67777777777777777776
No 129
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=26.81 E-value=70 Score=25.53 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=20.4
Q ss_pred hhhhhhHhhhhchHHHHHHHHHHH
Q 000667 648 SYLALGQAYKEDGQLHQALKTVEL 671 (1363)
Q Consensus 648 sylalg~ayked~ql~~~lk~vel 671 (1363)
+|..||.+|..-|++++|+..-|-
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 578999999999999999988765
No 130
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=26.68 E-value=33 Score=27.55 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=18.9
Q ss_pred hhhhhhhhHhhhhchHHHHHHH
Q 000667 646 GESYLALGQAYKEDGQLHQALK 667 (1363)
Q Consensus 646 gesylalg~ayked~ql~~~lk 667 (1363)
.++|..||.+|.+-|++.+|.+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999998863
No 131
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.47 E-value=4.7e+02 Score=32.31 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=45.3
Q ss_pred hhhhhhhhhhH----HHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 000667 982 KGWVCNEMGRI----RLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMY 1057 (1363)
Q Consensus 982 ~GnV~NELG~~----rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~y 1057 (1363)
.-++--|||+. ++--+...+|+.+.++| .+.+-.+ |++..+|+.+..+-....-|..-++.-
T Consensus 86 ~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-------~k~pL~~-------RLlfhlahklndEk~~~~fh~~LqD~~ 151 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYLGQYIEAKSIAEKA-------PKTPLCI-------RLLFHLAHKLNDEKRILTFHSSLQDTL 151 (557)
T ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhhC-------CCChHHH-------HHHHHHHHHhCcHHHHHHHHHHHhhhH
Confidence 44444555554 33345666666665554 3444434 888888886555433222222222222
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHH
Q 000667 1058 -----KQALETAKLEYCESLRYYRAA 1078 (1363)
Q Consensus 1058 -----nkAle~ak~eY~eAL~yyg~~ 1078 (1363)
.-.+-+-+..|++|+++|..-
T Consensus 152 EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 152 EDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 233445577788999999753
No 132
>KOG2479 consensus Translation initiation factor 3, subunit d (eIF-3d) [Translation, ribosomal structure and biogenesis]
Probab=26.27 E-value=1.9e+02 Score=35.93 Aligned_cols=84 Identities=21% Similarity=0.499 Sum_probs=54.0
Q ss_pred HH-HHhhhcCCCcEEEEEeeccceeceeeecccccccccCCCCCCCCCcChhHH-------HhhHHHHHHHHhhhccCC-
Q 000667 257 AW-LDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVV-------QQSGLSVLRFLQENCKQD- 327 (1363)
Q Consensus 257 ~W-LDNlM~NVPElamCyH~nGIVQ~YEliKTeDIp~leg~s~~g~~~F~P~vV-------~~~A~nIL~FLksNCtkd- 327 (1363)
-| +.+|+|++-.+-+ |+|.++....+.----| |+..|.|+-. -+||=-||+=+-+-|-|.
T Consensus 435 kWT~qAlLAgsD~mKl-----GyVSR~n~Rd~~~HvIL------gtq~~KP~efAsqinLnmdN~WGIlRciiDlcMK~~ 503 (549)
T KOG2479|consen 435 KWTVQALLAGSDQMKL-----GYVSRVNPRDHQNHVIL------GTQQYKPKEFASQINLNMDNAWGILRCIIDLCMKQP 503 (549)
T ss_pred HHHHHHHHcCCcceee-----eeeeccCcccccceeEE------EeeccChHHHHhhhcccccchhhhHHHHHHHHhcCC
Confidence 45 6889999887765 44544432222110000 0112333211 255667999999999765
Q ss_pred CceEEEEeeCCCCeEEeecccCCC
Q 000667 328 PGAYWLYKSAGEDVIRLFDLSVIP 351 (1363)
Q Consensus 328 GhTYWL~K~~~edvVkLYDLTtL~ 351 (1363)
.|.|.|.|+.+..+|+||++..=-
T Consensus 504 dGKYll~KDPnkpiiRlYsvP~~t 527 (549)
T KOG2479|consen 504 DGKYLLVKDPNKPIIRLYSVPPNT 527 (549)
T ss_pred CCcEEEEeCCCCceEEEeeCCCCc
Confidence 899999999999999999987633
No 133
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=26.25 E-value=59 Score=26.79 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=26.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000667 984 WVCNEMGRIRLERKEMEKGEHAFANAINAF 1013 (1363)
Q Consensus 984 nV~NELG~~rle~~~lkKSe~aF~~aI~aF 1013 (1363)
.++..||+.+.....+.+|+.+|+++|+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 367788999999999999999999999864
No 134
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=26.21 E-value=3.8e+02 Score=33.19 Aligned_cols=88 Identities=13% Similarity=-0.039 Sum_probs=57.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccce
Q 000667 943 VVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNI 1022 (1363)
Q Consensus 943 ~~~D~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNi 1022 (1363)
.+.|.|+.|..+.+-|+-.... .+.--+. -.+ .-+..-|.+-+=-+..|-.|.+|+++|.+.=-.-.|.+-.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~--~l~d~~~----kyr--~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSY--GLKDWSL----KYR--AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhc--CcCchhH----HHH--HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 3448888888888877766633 1111111 111 1122334443323467778999999999999999999999
Q ss_pred eheecchhhHHHHHHH
Q 000667 1023 ILINCNLGHGRRALAE 1038 (1363)
Q Consensus 1023 aLInCNLG~lrR~LAe 1038 (1363)
+..-|-+|-.||..++
T Consensus 246 arc~~~~aDIyR~~gd 261 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGD 261 (518)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9777777777776665
No 135
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.92 E-value=1.1e+02 Score=34.85 Aligned_cols=33 Identities=9% Similarity=0.231 Sum_probs=28.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 000667 983 GWVCNEMGRIRLERKEMEKGEHAFANAINAFKE 1015 (1363)
Q Consensus 983 GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~e 1015 (1363)
.+++.-||..++.++.+++|..+|.+.+.-|-.
T Consensus 180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 467788899999999999999999999988853
No 136
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=24.48 E-value=98 Score=31.55 Aligned_cols=48 Identities=15% Similarity=0.002 Sum_probs=28.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHH
Q 000667 988 EMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE 1038 (1363)
Q Consensus 988 ELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAe 1038 (1363)
|++..+.....-.+|+..|++|+..= -+...-.=.+.++|..+|.+++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~~~~~~~a~i~lastlr~LG~ 53 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAG---LSGADRRRALIQLASTLRNLGR 53 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHcCC
Confidence 33333333344568888898888741 1222222345578888888877
No 137
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=24.36 E-value=1.3e+03 Score=27.92 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhcccchhhhhcccccccCCC
Q 000667 1056 MYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISV 1135 (1363)
Q Consensus 1056 ~ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~ 1135 (1363)
.|-.-++.||.-+..+++++..++ .+= .-|.-.|++......++.++.-... +|
T Consensus 135 ~~~~~f~dAr~vF~~~~~~l~~A~------------~yf-~ld~~~t~hv~I~qd~S~lYk~Laf----FE--------- 188 (371)
T PF12309_consen 135 KYCLDFDDAREVFLNGQKWLNKAK------------EYF-VLDGFVTDHVQILQDISELYKYLAF----FE--------- 188 (371)
T ss_pred cccCChHHHHHHHHHHHHHHHHHH------------HHc-cccccHHHHHHHHHHHHHHHHHHHh----hc---------
Confidence 444556666666777777777666 111 1122224444444444444333333 22
Q ss_pred CcccchhhhhhhhcccHHHHHHHHHHHhhhcc--hhh---HHHHHHHHHHHhhccccchhhhhccccccCCCCCCCchhh
Q 000667 1136 PCEGRTRKELRKHEVSANDAIREALSLYESMG--DLR---KQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFV 1210 (1363)
Q Consensus 1136 ~~~~~~~eeleK~~Isa~Dai~eAL~lyeslG--pL~---k~rAA~ah~rLAs~~~d~cLr~le~d~~~e~~~Kk~~~~~ 1210 (1363)
.-.+.+--+-|..+ |.++..+......- .++ .++.|.+|.-+. ++-+..++.. .....+.-...+
T Consensus 189 -~~~~r~~kmhkRR~---d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i~----dlk~~~~~~~--~~~~~~~~~~~~ 258 (371)
T PF12309_consen 189 -EDPDRQIKMHKRRA---DLLEPLLKELNPQYYLNLCRQLWFELAEIYSEIM----DLKLEKLDEP--QNDNEPPDDHAL 258 (371)
T ss_pred -CCHHHHHHHHHHHH---HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhh--cccCCCCChHHH
Confidence 01123344566677 88888777665542 222 234444444444 3322333311 011222324456
Q ss_pred HHHHHhhhHHHHHHHHHhhhcCCCC---Cch--------hHHHHHhhccchhhhhccc-cchHH-HHHHHHHH
Q 000667 1211 HRVRQYASLAERNWQKAMDFYGPRS---HPT--------MYLTILMERSDLSFRLSCF-LHSNA-MLETALSC 1270 (1363)
Q Consensus 1211 q~~kq~asLAe~nwqKA~k~Y~p~~---hp~--------~~L~IlmERsAL~~~lst~-~~Snv-mLe~aL~~ 1270 (1363)
..++++..-|-.||++=++-|...+ -|. -||...+..+-||.++-+. ....+ .|+.+|..
T Consensus 259 ~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~ 331 (371)
T PF12309_consen 259 KKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEY 331 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHH
Confidence 6788899999999999999998433 111 3566666677777775333 22233 66666665
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=24.20 E-value=9.4e+02 Score=31.51 Aligned_cols=166 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred hhhhHHHHH--------HHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 000667 988 EMGRIRLER--------KEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQ 1059 (1363)
Q Consensus 988 ELG~~rle~--------~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynk 1059 (1363)
|-|+..+.| .-..++..++.++...-+ |+++.+ ..||+||+..... +.|-.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~~La~i~~~~-----------g~~~e 104 (694)
T PRK15179 46 EAGRELLQQARQVLERHAAVHKPAAALPELLDYVR---RYPHTE-------LFQVLVARALEAA-----------HRSDE 104 (694)
T ss_pred hHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHH---hccccH-------HHHHHHHHHHHHc-----------CCcHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhcccchhhhhcccccccCCCCccc
Q 000667 1060 ALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEG 1139 (1363)
Q Consensus 1060 Ale~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~ 1139 (1363)
|... +..++++ .| +.+.+.+++|+.|.+.-- ++
T Consensus 105 a~~~----l~~~~~~------------------~P--------d~~~a~~~~a~~L~~~~~----~e------------- 137 (694)
T PRK15179 105 GLAV----WRGIHQR------------------FP--------DSSEAFILMLRGVKRQQG----IE------------- 137 (694)
T ss_pred HHHH----HHHHHhh------------------CC--------CcHHHHHHHHHHHHHhcc----HH-------------
Q ss_pred chhhhhhhhcccHHHHHHHHHHHhhhc--chhhHHHHHHHHHHHhhccccchhhhhccccccCCCCCCCchhhHHHHHhh
Q 000667 1140 RTRKELRKHEVSANDAIREALSLYESM--GDLRKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYA 1217 (1363)
Q Consensus 1140 ~~~eeleK~~Isa~Dai~eAL~lyesl--GpL~k~rAA~ah~rLAs~~~d~cLr~le~d~~~e~~~Kk~~~~~q~~kq~a 1217 (1363)
||+.+|=.+++.+ . |.+|+.+| -++..+-+.++
T Consensus 138 --------------eA~~~~~~~l~~~p~~-------~~~~~~~a----~~l~~~g~~~~-------------------- 172 (694)
T PRK15179 138 --------------AGRAEIELYFSGGSSS-------AREILLEA----KSWDEIGQSEQ-------------------- 172 (694)
T ss_pred --------------HHHHHHHHHhhcCCCC-------HHHHHHHH----HHHHHhcchHH--------------------
Q ss_pred hHHHHHHHHHhhhcCCCCCchhHHHHHhhccchhhhhccccchHHHHHHHHHHHHcc
Q 000667 1218 SLAERNWQKAMDFYGPRSHPTMYLTILMERSDLSFRLSCFLHSNAMLETALSCLLEG 1274 (1363)
Q Consensus 1218 sLAe~nwqKA~k~Y~p~~hp~~~L~IlmERsAL~~~lst~~~SnvmLe~aL~~mLe~ 1274 (1363)
|+..|++|.. .|| .+=.+++.++-+........-...+++-|+...=.|
T Consensus 173 --A~~~y~~~~~-----~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 173 --ADACFERLSR-----QHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred --HHHHHHHHHh-----cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
No 139
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=24.01 E-value=80 Score=34.06 Aligned_cols=44 Identities=11% Similarity=0.005 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHH
Q 000667 989 MGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE 1038 (1363)
Q Consensus 989 LG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAe 1038 (1363)
||..+=.++++.+|+.+|..|+..= +|-.-.++|+|-.+..++.
T Consensus 75 LG~~~Q~~g~~~~AI~aY~~A~~L~------~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 75 LGECCQAQKHWGEAIYAYGRAAQIK------IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHHcCC
Confidence 4444444455666666666666542 2444455555555555544
No 140
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=22.61 E-value=77 Score=23.95 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=19.9
Q ss_pred hhhhhhHhhhhchHHHHHHHHHH
Q 000667 648 SYLALGQAYKEDGQLHQALKTVE 670 (1363)
Q Consensus 648 sylalg~ayked~ql~~~lk~ve 670 (1363)
.++.||++|-.-|++.+|+.+.+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46789999999999999998865
No 141
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=22.16 E-value=1.3e+03 Score=27.00 Aligned_cols=50 Identities=12% Similarity=0.176 Sum_probs=37.3
Q ss_pred CchhhHHHHHHHhhhhhhhhhhHH--HHHHHHHHHHHHHHHHHHHhhhcccc
Q 000667 970 TVSAELQSVLKKKGWVCNEMGRIR--LERKEMEKGEHAFANAINAFKEVSDY 1019 (1363)
Q Consensus 970 ~~~ae~~svlkr~GnV~NELG~~r--le~~~lkKSe~aF~~aI~aF~eV~D~ 1019 (1363)
.-.-|+.+|+=.+|=++-.+|... -..+.++.|..+|.+|..+|+.+.+.
T Consensus 101 ~~~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~ 152 (377)
T PF03097_consen 101 SLAFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLREN 152 (377)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 334466666666666666666653 23588999999999999999999988
No 142
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=21.94 E-value=83 Score=26.96 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=20.6
Q ss_pred hhhhhhhHhhhhchHHHHHHHHHHHH
Q 000667 647 ESYLALGQAYKEDGQLHQALKTVELA 672 (1363)
Q Consensus 647 esylalg~ayked~ql~~~lk~vela 672 (1363)
+.++.||++|.+.||+.+|.++++-.
T Consensus 26 ~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 26 EARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55677999999999999999987743
No 143
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=21.89 E-value=1.2e+02 Score=23.35 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=22.7
Q ss_pred hhhhhhHhhhhchHHHHHHHHHHHHHhhh
Q 000667 648 SYLALGQAYKEDGQLHQALKTVELACSVY 676 (1363)
Q Consensus 648 sylalg~ayked~ql~~~lk~velac~vy 676 (1363)
++..||.+|..-|++.+|++..+-+=.+|
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 67789999999999999998776654444
No 144
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=21.54 E-value=8.7e+02 Score=27.52 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhh-------hcccccceeheecchhhHHHHHHH
Q 000667 997 KEMEKGEHAFANAINAFK-------EVSDYTNIILINCNLGHGRRALAE 1038 (1363)
Q Consensus 997 ~~lkKSe~aF~~aI~aF~-------eV~D~tNiaLInCNLG~lrR~LAe 1038 (1363)
+.+..|...|..+|..|. ...|..+|+=.....|.+.+.+..
T Consensus 33 k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~ 81 (207)
T cd07602 33 KNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVED 81 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999 355666777555555555555544
No 145
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=21.40 E-value=1.1e+02 Score=23.31 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=23.1
Q ss_pred hhhhhhhHhhhhchHHHHHHHHHHHHHhh
Q 000667 647 ESYLALGQAYKEDGQLHQALKTVELACSV 675 (1363)
Q Consensus 647 esylalg~ayked~ql~~~lk~velac~v 675 (1363)
+.|..+|.+|..-|++.+|++..+-|-.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46888999999999999999887766543
No 146
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=21.39 E-value=2.4e+02 Score=34.62 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhcccc
Q 000667 1059 QALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDT 1120 (1363)
Q Consensus 1059 kAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ 1120 (1363)
+|-+.|...-.+||+||..+. +.-.|..| -++|.+|..||-|+..++.
T Consensus 325 ~aq~~a~~l~~~Al~yL~kA~----------d~ddPetW----v~vAEa~I~LGNL~d~eS~ 372 (404)
T PF12753_consen 325 EAQKIAQELIKKALEYLKKAQ----------DEDDPETW----VDVAEAMIDLGNLYDNESK 372 (404)
T ss_dssp C-STTHHHHHHHHHHHHHHHH----------HS--TTHH----HHHHHHHHHHHHH-SSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh----------ccCChhHH----HHHHHHHhhhhcccccchH
Confidence 455555666999999999988 34466677 4679999999999987776
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=21.21 E-value=3e+02 Score=29.90 Aligned_cols=46 Identities=17% Similarity=0.006 Sum_probs=24.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeheecchhhHHHHHHH
Q 000667 987 NEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE 1038 (1363)
Q Consensus 987 NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAe 1038 (1363)
+.+|...+++..++.|+..|.-.... || +.+.-+-|||-.++.+.+
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp-~~~~y~~gLG~~~Q~~g~ 84 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIY-----DA-WSFDYWFRLGECCQAQKH 84 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----Cc-ccHHHHHHHHHHHHHHhh
Confidence 44555555666666666666654432 22 223344455555555554
No 148
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.78 E-value=1.2e+03 Score=26.18 Aligned_cols=149 Identities=15% Similarity=0.225 Sum_probs=81.0
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH---------------HHHHH
Q 000667 946 DAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHA---------------FANAI 1010 (1363)
Q Consensus 946 D~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~a---------------F~~aI 1010 (1363)
|.-.++..|.+-+-.++..+....+......+.+++-+++..||+.++.. ++..+++. +.++=
T Consensus 30 dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~--L~~q~~~~l~~~L~~F~k~dl~~vke~k 107 (200)
T cd07638 30 DAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTI--LFDQAQRSIKAQLQTFVKEDLRKFKDAK 107 (200)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45556667777777777777545556667778999999999999998642 22223222 33334
Q ss_pred HHhhhcccccceehe-ecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 000667 1011 NAFKEVSDYTNIILI-NCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEA 1089 (1363)
Q Consensus 1011 ~aF~eV~D~tNiaLI-nCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~~~ 1089 (1363)
+.|.++++..=.||. |.++-+.+..-.++-...+ ..-.+++..+.+.|--+|+.+-++|+ .
T Consensus 108 k~FdK~s~~~~~aL~K~~~~~k~k~~e~eEa~~~l----------~~~r~~F~~~~ldYv~~ln~vq~kKk--------f 169 (200)
T cd07638 108 KQFDKVSEEKENALVKNAQVQRNKQHEVEEATNIL----------TATRKCFRHIALDYVLQINVLQSKRR--------S 169 (200)
T ss_pred HHHHHHhHHHHHHHHHhccCCcCchHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 444444432111111 1111010000001111110 23447788888999999999999992 1
Q ss_pred ccccccchhhHHHHHHHHHHHHHHhhhc
Q 000667 1090 GSVSNSLRMEVHTQFAHTYLRLGMLLAR 1117 (1363)
Q Consensus 1090 ~~~~~~LwdeV~~qlA~Tyl~LG~LLqd 1117 (1363)
+.+-| ++. +.+=-.|||..|.-|..
T Consensus 170 e~le~-ll~--~m~a~~tff~qG~el~~ 194 (200)
T cd07638 170 EILKS-MLS--FMYAHLTFFHQGYDLFS 194 (200)
T ss_pred HHHHH-HHH--HHHHHHHHHHhHHHHHH
Confidence 11211 232 23444578888865543
No 149
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=20.56 E-value=3.1e+02 Score=37.28 Aligned_cols=142 Identities=24% Similarity=0.295 Sum_probs=87.7
Q ss_pred eeccCCCCCChhHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000667 937 KYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEV 1016 (1363)
Q Consensus 937 kyL~~~~~~D~E~NL~~AieCYeeAl~al~~lp~~~ae~~svlkr~GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV 1016 (1363)
.||.-|..+- .+|+-=..|++.+...|.-.......++|++-+=.=|.|+.--...-+|=+..|..+|.+|+++
T Consensus 581 ~Wl~~Pl~~~------~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~k~i~~f~rvLegfk~~ 654 (1125)
T KOG0217|consen 581 TWLMAPLCDK------EDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNKKKIADFIRVLEGFKEI 654 (1125)
T ss_pred HHhhCcCCCH------HHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccchhHHHHHHHHHHHHHHH
Confidence 5888776553 3456666677777665665667777788888777667666544455677788999999999987
Q ss_pred ccccceeheecch-hhHHHHHHHHHHh------hhhhhhhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHhhh
Q 000667 1017 SDYTNIILINCNL-GHGRRALAEEMVS------KVESLKIHTIFQNMYKQALETA--------KLEYCESLRYYRAAKLQ 1081 (1363)
Q Consensus 1017 ~D~tNiaLInCNL-G~lrR~LAee~~s------k~~~~ke~~~~~~~ynkAle~a--------k~eY~eAL~yyg~~K~~ 1081 (1363)
.+--- .+++--. |-+.|.+.+-..+ .+.+|... -.-.+|.+.+ -.||.+|++..+..+.+
T Consensus 655 ~~~~~-~~~~v~~~~~~~~~is~~~~~~p~~~~~i~~~~~a----f~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~ 729 (1125)
T KOG0217|consen 655 NKLLG-SLINVLKEGEGLRLISELLESMPNLSEEIENWTEA----FDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENE 729 (1125)
T ss_pred HHHHH-HHHHHHHhhHHHHHHHHHhcCcchhhHHHHHHHHH----HHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHH
Confidence 65321 1122222 5555555553322 22222221 1111333332 35799999999999988
Q ss_pred hhhhhhhh
Q 000667 1082 LNSLVEEA 1089 (1363)
Q Consensus 1082 l~~~~~~~ 1089 (1363)
|.+..++.
T Consensus 730 L~~~L~~~ 737 (1125)
T KOG0217|consen 730 LLAYLEEY 737 (1125)
T ss_pred HHHHHHHH
Confidence 88776654
No 150
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=20.50 E-value=5.4e+02 Score=29.13 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhh-------hcccccceeheecchhhHHHHHHH
Q 000667 997 KEMEKGEHAFANAINAFK-------EVSDYTNIILINCNLGHGRRALAE 1038 (1363)
Q Consensus 997 ~~lkKSe~aF~~aI~aF~-------eV~D~tNiaLInCNLG~lrR~LAe 1038 (1363)
+.+..|...|+.+|..|. .+.|...|+=.....|.+.+.+..
T Consensus 33 k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~ 81 (207)
T cd07636 33 KNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLED 81 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999 677777788555566666665555
No 151
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=20.15 E-value=9.2e+02 Score=27.61 Aligned_cols=134 Identities=17% Similarity=0.117 Sum_probs=78.7
Q ss_pred HHhhhcccccceeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhh
Q 000667 1011 NAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALET----AKLEYCESLRYYRAAKLQLNSLV 1086 (1363)
Q Consensus 1011 ~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~----ak~eY~eAL~yyg~~K~~l~~~~ 1086 (1363)
..-++.++...++-..-..|..+.-+|+.........+. .|+..++. -=.+|.++.+-+..++..+.+.+
T Consensus 75 ~~G~~lg~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~------~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K 148 (223)
T cd07615 75 RYGRELGEESTFGNALLDVGESMKQMAEVKDSLDINVKQ------NFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKK 148 (223)
T ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666655556666666666655554444332 33333332 12247777777777774444433
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHhhhcccchhhhhcccccccCCCCcccchhhhhhhhcccHHHHHHHHHHHhhhc
Q 000667 1087 EEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESM 1166 (1363)
Q Consensus 1087 ~~~~~~~~~LwdeV~~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~~Isa~Dai~eAL~lyesl 1166 (1363)
...+.. + -+.+ +....|-+.|..+|...-..+.+.+
T Consensus 149 ~r~~k~---------------------------~-~eE~----------------~~A~~kfees~E~a~~~M~n~le~e 184 (223)
T cd07615 149 KRQGKI---------------------------P-DEEI----------------RQAVEKFEESKELAERSMFNFLEND 184 (223)
T ss_pred HcCCCC---------------------------c-HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 221110 0 1011 1222444557778888888899998
Q ss_pred chhhHHHHHHHHHHHhhccccchhhhhccc
Q 000667 1167 GDLRKQEAAYAYFQLACYQRDCFLKFLESD 1196 (1363)
Q Consensus 1167 GpL~k~rAA~ah~rLAs~~~d~cLr~le~d 1196 (1363)
.+..++=++++..||- ||..|+.+|+.-
T Consensus 185 ~e~~~~L~~lv~AQl~--Yh~~a~eiL~~l 212 (223)
T cd07615 185 VEQVSQLSVLIEAALD--YHRQSTEILEDL 212 (223)
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 8888888999999998 666668777654
No 152
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=20.08 E-value=2.1e+02 Score=36.77 Aligned_cols=27 Identities=4% Similarity=0.023 Sum_probs=20.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000667 986 CNEMGRIRLERKEMEKGEHAFANAINA 1012 (1363)
Q Consensus 986 ~NELG~~rle~~~lkKSe~aF~~aI~a 1012 (1363)
..-++..++....+.+|+.+|++++..
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344556666678888999999998866
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.06 E-value=1.5e+03 Score=27.03 Aligned_cols=179 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred eeheecchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccchhhHH
Q 000667 1022 IILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVH 1101 (1363)
Q Consensus 1022 iaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~eAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~ 1101 (1363)
||.+.|+---+-..|=.....+-...+.-...+.+..+|.+. |.+|++||..-= .-.|
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~----~~~A~e~y~~lL-----------~ddp------- 117 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN----YKEAIEYYESLL-----------EDDP------- 117 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc----hhhHHHHHHHHh-----------ccCc-------
Q ss_pred HHHHHHHHHHHHhhhcccchhhhhcccccccCCCCcccchhhhhhhhcccHHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Q 000667 1102 TQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQL 1181 (1363)
Q Consensus 1102 ~qlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~~Isa~Dai~eAL~lyeslGpL~k~rAA~ah~rL 1181 (1363)
|+.+.---.+|.+.+.--+ .++++ ..-+.-+.-..=-||-.+.-.+|=++|..-| |||++=.+
T Consensus 118 t~~v~~KRKlAilka~GK~-l~aIk--------------~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~k--A~fClEE~ 180 (289)
T KOG3060|consen 118 TDTVIRKRKLAILKAQGKN-LEAIK--------------ELNEYLDKFMNDQEAWHELAEIYLSEGDFEK--AAFCLEEL 180 (289)
T ss_pred chhHHHHHHHHHHHHcCCc-HHHHH--------------HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHH--HHHHHHHH
Q ss_pred hhccccchhhhhccccccCCCCCCCchhhHHHHHhhhHHHHHHHHHhhhcCCCCCchhHHHHHhhccch
Q 000667 1182 ACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTMYLTILMERSDL 1250 (1363)
Q Consensus 1182 As~~~d~cLr~le~d~~~e~~~Kk~~~~~q~~kq~asLAe~nwqKA~k~Y~p~~hp~~~L~IlmERsAL 1250 (1363)
-+.+-...+=|+-..+ =-+-|.-..---+|.+||.+|+++=+ ..-...+-|.+--++|
T Consensus 181 ll~~P~n~l~f~rlae---------~~Yt~gg~eN~~~arkyy~~alkl~~--~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAE---------VLYTQGGAENLELARKYYERALKLNP--KNLRALFGIYLCGSAL 238 (289)
T ss_pred HHcCCCcHHHHHHHHH---------HHHHHhhHHHHHHHHHHHHHHHHhCh--HhHHHHHHHHHHHHHH
Done!