Query 000667
Match_columns 1363
No_of_seqs 94 out of 96
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 15:53:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000667.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_441-444//hhsearch_pdb/000667hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fqi_A Protein DOM3Z, DOM-3 ho 1.0 1 1 72.4 18.4 213 32-336 144-375 (417)
2 4a1s_A PINS, partner of inscut 1.0 1 1 63.2 13.8 207 983-1270 126-332 (411)
3 3ulq_A Response regulator aspa 1.0 1 1 63.0 13.9 184 950-1240 118-303 (383)
4 3q15_A PSP28, response regulat 1.0 1 1 62.8 14.1 184 949-1239 115-299 (378)
5 4a1s_A PINS, partner of inscut 1.0 1 1 62.8 17.2 98 950-1079 63-160 (411)
6 3sf4_A G-protein-signaling mod 1.0 1 1 59.4 17.0 38 986-1023 190-227 (406)
7 3sf4_A G-protein-signaling mod 1.0 1 1 59.3 17.7 54 985-1038 89-142 (406)
8 3ulq_A Response regulator aspa 1.0 1 1 59.1 14.6 46 989-1034 109-154 (383)
9 3q15_A PSP28, response regulat 1.0 1 1 58.5 10.4 187 986-1270 104-290 (378)
10 1qqe_A Vesicular transport pro 1.0 1 1 58.3 11.1 120 933-1077 19-150 (292)
No 1
>3fqi_A Protein DOM3Z, DOM-3 homolog Z; hydrolase, protein binding; HET: EPE; 2.01A {Mus musculus} PDB: 3fqj_A*
Probab=1.00 E-value=1 Score=72.42 Aligned_cols=213 Identities=16% Similarity=0.187 Sum_probs=143.5
Q ss_pred CCEEEECCHHHHHHHHCCCCC-CCCEEEEEEEECCEEEECCCCCCCCCHHHHHCCCCCCHH--HHHHHHHHHHHHHHCCC
Q ss_conf 942785463777675315678-971599999422356422676800000443305783100--12336899877450145
Q 000667 32 DDIDVISPTDILKQIFKIPYS-KARLSISVHRVGQTLVLNYGADVEEGEKLIRRHGNQSKC--ADQSLFLNFAMHSVRME 108 (1363)
Q Consensus 32 deVDVVSdaEnIKkLlKiPYS-Ks~VSmaVHRIG~TLLLDeg~Di~e~ekLfrr~~nq~k~--~~KaLlsKFLy~Si~~~ 108 (1363)
-++|+|+.-.+|.+|+-.||. +....|.|.|+..|+.|.+ ....+. .....+.... ....+-.||=.++....
T Consensus 144 i~aDfVT~Rg~L~kIm~tpye~~~~~~i~v~~~~GtIyl~~---~~~~~~-~~~~~~~~~~~~~~~y~GyKFE~~~T~~~ 219 (417)
T 3fqi_A 144 LAGATVTWRGHLTKLLTTPYERQEGWQLAASRFQGTLYLSE---VETPAA-RAQRLARPPLLRELMYMGYKFEQYMCADK 219 (417)
T ss_dssp GGGCEEEEHHHHHHHHHGGGCCSCCEEEEEEEETTEEEEEE---ECCHHH-HHHHHTCCHHHHHHHHHHHHHHHHHEESS
T ss_pred CCCEEECCHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEEE---CCCHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 23519915689999984703588885999999899999983---483555-43024677367788777998777621389
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 57999999997311147786789899887777601110148988888864334776432111124789998643555578
Q 000667 109 ACDCPPTHQSPSERQANSSVLPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSRKNKRNKNHDPVKKASHVGE 188 (1363)
Q Consensus 109 ~~~~ppth~~~~e~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~P~~~~~~v~e 188 (1363)
... + ++.. .++
T Consensus 220 p~~-~-------------------------------------------------------~~~~-----~~V-------- 230 (417)
T 3fqi_A 220 PGG-S-------------------------------------------------------PDPS-----GEV-------- 230 (417)
T ss_dssp TTC-C-------------------------------------------------------CCTT-----SCE--------
T ss_pred CCC-C-------------------------------------------------------CCCC-----CCC--------
T ss_conf 877-7-------------------------------------------------------6766-----554--------
Q ss_pred CCCCCCHHHCCCCCCCCCCCCEEEEEEECCCCEECCCCCCCCCCCC----C--EEEEEEECCCCCCCCC--------HHH
Q ss_conf 8876600110013668887531676652131000145620003897----5--0489964156523580--------145
Q 000667 189 KPRCSIQESEKHRRVGNDGFLRVLFWQFHNFRMLLGSDLLLFSNEK----Y--VAVSLHLWDVARQVTP--------LTW 254 (1363)
Q Consensus 189 ~~~~~~~~~e~~~~~~~~~F~Rni~WtF~di~MLVGSDlPIFg~~~----~--paVSLrLrD~skpIn~--------lTg 254 (1363)
.++..|--++.=+++++++|+|.-+--+.... . -=|-|+..- ...++ .--
T Consensus 231 --------------n~~~qf~sVvrt~lg~~~ll~~gEVDaid~~~~~~~~~~~yVELKTs~--~~~~~~~~~~f~r~Kl 294 (417)
T 3fqi_A 231 --------------NTNVAYCSVLRSRLGNHPLLFSGEVDCLNPQAPCTQPPSCYVELKTSK--EMHSPGQWRSFYRHKL 294 (417)
T ss_dssp --------------ETTCEEEEEEEEEETTEEEEEEEECCEECTTCSSCSTTTTEEEEEEEE--CCCSHHHHHHHHHHHH
T ss_pred --------------CCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEE--CCCCHHHHHHHHHHHH
T ss_conf --------------577408999984407722798665402137776778876269999985--4668266532547778
Q ss_pred HHHHHHHHHCCCCCEEEEEE-ECCCEECEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CEEE
Q ss_conf 99999865118880788784-244000015201232122248888999876726798627999999966204799-5489
Q 000667 255 LEAWLDNVMASVPELAICYH-ENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDP-GAYW 332 (1363)
Q Consensus 255 LD~WLDNlMaNVPElamCyH-~nGIVQ~YEliKTeDIp~leg~s~~g~~~FsP~vV~~~A~nIL~FLksNCtkdG-hTYW 332 (1363)
+.+|+..-+.+||.+++.++ .+|+|+..|-+.|++||.+-.. ....++|.+-.+++..+|.||++..+.|+ .+-|
T Consensus 295 lk~W~QSFL~GVp~IivGfRD~~g~l~~ie~~~t~eIp~l~k~---~~~~W~~~vc~~f~~~~L~~Ik~~v~~Dd~~~vy 371 (417)
T 3fqi_A 295 LKWWAQSFLPGVPHVVAGFRNPEGFVCSLKTFPTMEMFENVRN---DREGWNPSVCMNFCAAFLSFAQSTVVQDDPRLVH 371 (417)
T ss_dssp HHHHHHHHTTTCCEEEEEEECTTSEEEEEEEEEGGGGGGGTTT---CTTCCCHHHHHHHHHHHHHHHHHHCCSBCTTEEE
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 9999997504898799999779984999999974343456651---4699998999999999999998643667997799
Q ss_pred EEEE
Q ss_conf 9840
Q 000667 333 LYKS 336 (1363)
Q Consensus 333 L~K~ 336 (1363)
+|.-
T Consensus 372 ~~~~ 375 (417)
T 3fqi_A 372 LFSW 375 (417)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9998
No 2
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=63.16 Aligned_cols=207 Identities=12% Similarity=0.102 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33533234678889989988999999998756326543240200120257999899998555555443226999999999
Q 000667 983 GWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALE 1062 (1363)
Q Consensus 983 GnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle 1062 (1363)
+.+++.+|..++....+.++..+|.+++..++...|....+.++.++|..+...++...... ..+...--...|.+|++
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~-~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRN-PGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHS-TTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHH
T ss_conf 99999999999987899999999999999998710448899999999999998376111333-10011210699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 97999999999999986533123331035661001357888889999999865103520133215654457777664101
Q 000667 1063 TAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTR 1142 (1363)
Q Consensus 1063 ~ak~eY~kAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~tqlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~ 1142 (1363)
. |.++++++.... .+ ...+.+++++|.++...-- ++
T Consensus 205 ~----~~~al~~~~~~~-------------~~-------~~~~~~~~~la~~~~~~g~----~~---------------- 240 (411)
T 4a1s_A 205 F----YQENLKLMRDLG-------------DR-------GAQGRACGNLGNTYYLLGD----FQ---------------- 240 (411)
T ss_dssp H----HHHHHHHHHHHT-------------CH-------HHHHHHHHHHHHHHHHTTC----HH----------------
T ss_pred H----HHHHHHHHHHCC-------------CH-------HHHHHHHHHHHHHHHHCCC----HH----------------
T ss_conf 9----999999999738-------------87-------9999999999999998588----29----------------
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 00101013578999999987621152468798989999851132310143202233588999984246778875669999
Q 000667 1143 KELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAER 1222 (1363)
Q Consensus 1143 eeleK~vIsa~Dai~eAL~lyeslGpL~k~rAA~ah~rLAs~~~d~cLr~le~d~~~e~~~Kk~~~~~q~~kq~asLAe~ 1222 (1363)
+. + +.+++++.++...+. ....+.+++.|| .+++...+.+ . |..
T Consensus 241 ----~A-~---~~~~~al~~~~~~~~--~~~~~~~~~~la----~~~~~~g~~~---------------~-------A~~ 284 (411)
T 4a1s_A 241 ----AA-I---EHHQERLRIAREFGD--RAAERRANSNLG----NSHIFLGQFE---------------D-------AAE 284 (411)
T ss_dssp ----HH-H---HHHHHHHHHHHHHTC--HHHHHHHHHHHH----HHHHTTTCHH---------------H-------HHH
T ss_pred ----HH-H---HHHHHHHHHHHHCCC--CHHHHHHHHHHH----HHHHHCCCHH---------------H-------HHH
T ss_conf ----99-9---999999999985199--678999999999----9999876899---------------9-------999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999985230889991247898751000243520253049999999998
Q 000667 1223 NWQKAMDFYGPRSHPTMYLTILMERSDLSFRLSCFLHSNAMLETALSC 1270 (1363)
Q Consensus 1223 nyqKA~k~Y~p~~hp~~~L~IlmERsAL~~~lst~~~SnvmLe~aL~~ 1270 (1363)
.+++|++.+.....+.....++...+.++......-.....++.++..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999876987999999999999999818899999999999999
No 3
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=62.99 Aligned_cols=184 Identities=15% Similarity=0.172 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEHEECC
Q ss_conf 788989999999996249998415689999874335332346788899899889999999987563265-4324020012
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD-YTNIILINCN 1028 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkrlGnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D-~tNiaLInCN 1028 (1363)
+...|+++|+.|+..+...+ ... ..+.+++.||..++......+|..+|.+|+..|+...+ ..+.+.++.|
T Consensus 118 ~~~~A~~~~~~al~~~~~~~-~~~-------~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 118 EYLSAIKFFKKAESKLIFVK-DRI-------EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp CHHHHHHHHHHHHTTGGGCC-CHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCC-CHH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999999999986099-899-------9999999999999980887999999999999998676643779989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 02579998999985555554432269999999999799999999999998653312333103566100135788888999
Q 000667 1029 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTY 1108 (1363)
Q Consensus 1029 LG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~kAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~tqlA~Ty 1108 (1363)
+|..++.+ +.|.+|++. |.+||++..... .+ ...+.+|
T Consensus 190 lg~~~~~~------------------g~~~~A~~~----~~~al~~~~~~~-------------~~-------~~~~~~~ 227 (383)
T 3ulq_A 190 FATNFLDL------------------KQYEDAISH----FQKAYSMAEAEK-------------QP-------QLMGRTL 227 (383)
T ss_dssp HHHHHHHT------------------TCHHHHHHH----HHHHHHHHHHTT-------------CH-------HHHHHHH
T ss_pred HHHHHHHH------------------CCHHHHHHH----HHHHHHHHHHCC-------------CH-------HHHHHHH
T ss_conf 99999985------------------489999999----999999998749-------------82-------7899999
Q ss_pred HHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCCCC
Q ss_conf 999986510352013321565445777766410100101013578999999987621152-4687989899998511323
Q 000667 1109 LRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGD-LRKQEAAYAYFQLACYQRD 1187 (1363)
Q Consensus 1109 l~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~vIsa~Dai~eAL~lyeslGp-L~k~rAA~ah~rLAs~~~d 1187 (1363)
++||.++...-- + ++. + +.+++|+.+++..+. ... +.+++.|| .
T Consensus 228 ~~lg~~y~~~g~----~--------------------~~A-~---~~~~~al~~~~~~~~~~~~---~~~~~~l~----~ 272 (383)
T 3ulq_A 228 YNIGLCKNSQSQ----Y--------------------EDA-I---PYFKRAIAVFEESNILPSL---PQAYFLIT----Q 272 (383)
T ss_dssp HHHHHHHHHTTC----H--------------------HHH-H---HHHHHHHHHHHHTTCGGGH---HHHHHHHH----H
T ss_pred HHHHHHHHHCCC----H--------------------HHH-H---HHHHHHHHHHHHHCCCHHH---HHHHHHHH----H
T ss_conf 999999987799----9--------------------999-9---9999999989861655139---99999999----9
Q ss_pred CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 10143202233588999984246778875669999999985230889991247
Q 000667 1188 CFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTMY 1240 (1363)
Q Consensus 1188 ~cLr~le~d~~~e~~~Kk~~~~~q~~kq~asLAe~nyqKA~k~Y~p~~hp~~~ 1240 (1363)
++.+..+.+ . |..++++|+++......|...
T Consensus 273 ~~~~~g~~~---------------~-------A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 273 IHYKLGKID---------------K-------AHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHTTCHH---------------H-------HHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHH---------------H-------HHHHHHHHHHHHHHCCCHHHH
T ss_conf 998879979---------------9-------999999999999885999999
No 4
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=62.83 Aligned_cols=184 Identities=15% Similarity=0.100 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEHEEC
Q ss_conf 7788989999999996249998415689999874335332346788899899889999999987563265-432402001
Q 000667 949 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD-YTNIILINC 1027 (1363)
Q Consensus 949 ~NL~~AieCYeeAl~al~~lp~~~ae~~svlkrlGnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D-~tNiaLInC 1027 (1363)
.+...|+++|++|+..+...+ .. ...+++++.||..+.....+.+|..+|.+|+..|+...+ ..+++.++.
T Consensus 115 g~~~~A~~~~~~al~~~~~~~-~~-------~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 115 KEYVEAIGYYREAEKELPFVS-DD-------IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp TCHHHHHHHHHHHHTTGGGCC-CH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCC-CH-------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 789999999999999986588-91-------8999999999999998199099999999999999867883066999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 20257999899998555555443226999999999979999999999999865331233310356610013578888899
Q 000667 1028 NLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHT 1107 (1363)
Q Consensus 1028 NLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~kAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~tqlA~T 1107 (1363)
|||..+..+ +.|.+|++. |.+||++..... .+ ...+.+
T Consensus 187 ~lg~~y~~~------------------~~~~~A~~~----~~~al~~~~~~~-------------~~-------~~~~~~ 224 (378)
T 3q15_A 187 VIAGNYDDF------------------KHYDKALPH----LEAALELAMDIQ-------------ND-------RFIAIS 224 (378)
T ss_dssp HHHHHHHHT------------------TCHHHHHHH----HHHHHHHHHHTT-------------CH-------HHHHHH
T ss_pred HHHHHHHHH------------------CCHHHHHHH----HHHHHHHHHHCC-------------CH-------HHHHHH
T ss_conf 999999985------------------789999999----999999999869-------------87-------789999
Q ss_pred HHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999865103520133215654457777664101001010135789999999876211524687989899998511323
Q 000667 1108 YLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRD 1187 (1363)
Q Consensus 1108 yl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eeleK~vIsa~Dai~eAL~lyeslGpL~k~rAA~ah~rLAs~~~d 1187 (1363)
+.+||.++...-- + ++. + +.+++|+.+++..+.... +.+++.|| .
T Consensus 225 ~~~lg~~y~~~~~----~--------------------~~A-~---~~~~~al~~~~~~~~~~~---~~~~~~la----~ 269 (378)
T 3q15_A 225 LLNIANSYDRSGD----D--------------------QMA-V---EHFQKAAKVSREKVPDLL---PKVLFGLS----W 269 (378)
T ss_dssp HHHHHHHHHHHTC----H--------------------HHH-H---HHHHHHHHHHHHHCGGGH---HHHHHHHH----H
T ss_pred HHHHHHHHHHCCC----H--------------------HHH-H---HHHHHHHHHHHHHCCHHH---HHHHHHHH----H
T ss_conf 9989999987899----9--------------------999-9---999999998876088569---99999999----9
Q ss_pred CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 1014320223358899998424677887566999999998523088999124
Q 000667 1188 CFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTM 1239 (1363)
Q Consensus 1188 ~cLr~le~d~~~e~~~Kk~~~~~q~~kq~asLAe~nyqKA~k~Y~p~~hp~~ 1239 (1363)
++.+..+.+ . |...+++|+++......+..
T Consensus 270 ~~~~~g~~~---------------~-------A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 270 TLCKAGQTQ---------------K-------AFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHTTCHH---------------H-------HHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHCCCHH---------------H-------HHHHHHHHHHHHHHCCCHHH
T ss_conf 999889989---------------9-------99999999999988389889
No 5
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=62.82 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEECCH
Q ss_conf 78898999999999624999841568999987433533234678889989988999999998756326543240200120
Q 000667 950 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1029 (1363)
Q Consensus 950 NL~~AieCYeeAl~al~~lp~~~ae~~svlkrlGnV~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNL 1029 (1363)
+...|+.+|++|+..- |.... ..+++++.+|..++....+.+++.+|.+++..++...|....+.++.++
T Consensus 63 ~~~~A~~~~~~al~~~---~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 63 DCRAGVAFFQAAIQAG---TEDLR-------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp CHHHHHHHHHHHHHHC---CSCHH-------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC---CCCHH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 5999999999998746---45846-------8999999999999987899999999999999998715736799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25799989999855555544322699999999997999999999999986
Q 000667 1030 GHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAK 1079 (1363)
Q Consensus 1030 G~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~kAL~yyg~~K 1079 (1363)
|..+... +.|.+|++. |.++++++....
T Consensus 133 ~~~~~~~------------------g~~~~A~~~----~~~al~~~~~~~ 160 (411)
T 4a1s_A 133 GNTLKVM------------------GRFDEAAIC----CERHLTLARQLG 160 (411)
T ss_dssp HHHHHHT------------------TCHHHHHHH----HHHHHHHHHHHT
T ss_pred HHHHHHC------------------CCHHHHHHH----HHHHHHHHHHHH
T ss_conf 9999987------------------899999999----999999998710
No 6
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=59.36 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 33234678889989988999999998756326543240
Q 000667 986 CNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNII 1023 (1363)
Q Consensus 986 ~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNia 1023 (1363)
++.+|..++....+.++..+|.+++..+....++...+
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 227 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999983689999999999999998627858999
No 7
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=59.26 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEECCHHHHHHHHHH
Q ss_conf 533234678889989988999999998756326543240200120257999899
Q 000667 985 VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAE 1038 (1363)
Q Consensus 985 V~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAe 1038 (1363)
+++.+|..+.....+.++..+|.+++..+....|+...+.++.++|..+...++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999999884799999999999999998653210068999999999997397
No 8
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=59.12 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEECCHHHHHH
Q ss_conf 3467888998998899999999875632654324020012025799
Q 000667 989 MGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRR 1034 (1363)
Q Consensus 989 LG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR 1034 (1363)
+|..++....+.+|..+|.+|+..++.+.|....+.++.++|..+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~ 154 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY 154 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999998669999999999999998609989999999999999999
No 9
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=58.45 Aligned_cols=187 Identities=13% Similarity=0.111 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33234678889989988999999998756326543240200120257999899998555555443226999999999979
Q 000667 986 CNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAK 1065 (1363)
Q Consensus 986 ~NELG~~rle~~~lkKSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak 1065 (1363)
+.-+|..++.+..+.+|..+|.+|+..++.+.|....+-++.|||..+..++ .|.+|++.
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~------------------~~~~A~~~-- 163 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK------------------QTHVSMYH-- 163 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT------------------CHHHHHHH--
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC------------------CCHHHHHH--
T ss_conf 9999999999778999999999999998658891899999999999999819------------------90999999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999999999986533123331035661001357888889999999865103520133215654457777664101001
Q 000667 1066 LEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKEL 1145 (1363)
Q Consensus 1066 ~eY~kAL~yyg~~K~~l~~~~~~~~~~~~~LwdeV~tqlA~Tyl~LG~LLqd~~~ls~~~e~~~~~~~~~~~~~~~~eel 1145 (1363)
|.+||+++.... .++ ...+.++++||..+.+.-. ++
T Consensus 164 --~~~al~~~~~~~------------~~~-------~~~~~~~~~lg~~y~~~~~----~~------------------- 199 (378)
T 3q15_A 164 --ILQALDIYQNHP------------LYS-------IRTIQSLFVIAGNYDDFKH----YD------------------- 199 (378)
T ss_dssp --HHHHHHHHHTST------------TCH-------HHHHHHHHHHHHHHHHTTC----HH-------------------
T ss_pred --HHHHHHHHHHCC------------CCH-------HHHHHHHHHHHHHHHHHCC----HH-------------------
T ss_conf --999999998678------------830-------6699999999999998578----99-------------------
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 01013578999999987621152468798989999851132310143202233588999984246778875669999999
Q 000667 1146 RKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQ 1225 (1363)
Q Consensus 1146 eK~vIsa~Dai~eAL~lyeslGpL~k~rAA~ah~rLAs~~~d~cLr~le~d~~~e~~~Kk~~~~~q~~kq~asLAe~nyq 1225 (1363)
+. + +.+++||.++...+... ..+.+++.|| .++....+.+. |..+++
T Consensus 200 -~A-~---~~~~~al~~~~~~~~~~--~~~~~~~~lg----~~y~~~~~~~~----------------------A~~~~~ 246 (378)
T 3q15_A 200 -KA-L---PHLEAALELAMDIQNDR--FIAISLLNIA----NSYDRSGDDQM----------------------AVEHFQ 246 (378)
T ss_dssp -HH-H---HHHHHHHHHHHHTTCHH--HHHHHHHHHH----HHHHHHTCHHH----------------------HHHHHH
T ss_pred -HH-H---HHHHHHHHHHHHCCCHH--HHHHHHHHHH----HHHHHCCCHHH----------------------HHHHHH
T ss_conf -99-9---99999999999869877--8999999899----99987899999----------------------999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 985230889991247898751000243520253049999999998
Q 000667 1226 KAMDFYGPRSHPTMYLTILMERSDLSFRLSCFLHSNAMLETALSC 1270 (1363)
Q Consensus 1226 KA~k~Y~p~~hp~~~L~IlmERsAL~~~lst~~~SnvmLe~aL~~ 1270 (1363)
+|++++....+|.. ..++...+.++..+.........++.++..
T Consensus 247 ~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 247 KAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99998876088569-999999999999889989999999999999
No 10
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=58.33 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=59.6
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH---HHHHH---HH------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6631533587778846778898999999999624999841---56899---99------874335332346788899899
Q 000667 933 GGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVS---AELQS---VL------KKKGWVCNEMGRIRLERKEME 1000 (1363)
Q Consensus 933 GgiFkyL~~~~~~D~E~NL~~AieCYeeAl~al~~lp~~~---ae~~s---vl------krlGnV~NELG~~rle~~~lk 1000 (1363)
+|.|.|++. . ...+...|+++|+.|..++.....+. ..+.. +. ...+++++.+|..+.....+.
T Consensus 19 ~~~~~~~~~-~---~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 19 SGFMKLFSG-S---DSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp CTHHHHHSC-C---SHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCCHHCCC-C---CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 886300689-9---976699999999999999998689999999999999999981999999999999999998779999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999999998756326543240200120257999899998555555443226999999999979999999999999
Q 000667 1001 KGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRA 1077 (1363)
Q Consensus 1001 KSe~aF~~aI~aF~eV~D~tNiaLInCNLG~lrR~LAee~~sk~~~~ke~~~~~~~ynkAle~ak~eY~kAL~yyg~ 1077 (1363)
++..+|.+||..+....|+...+-.+.|+|..+... . +.|.+|++. |.+||+++..
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~------l-----------g~~~~A~~~----~~~Al~~~~~ 150 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND------L-----------HDYAKAIDC----YELAGEWYAQ 150 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------T-----------CCHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------H-----------CCHHHHHHH----HHHHHHHHHH
T ss_conf 999999999999998698899999999999999986------2-----------479999999----9999999884
Done!