BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000670
(1361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X1D|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1D|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1E|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
pdb|2X1E|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum In Complex 6-Aminopenicillanic Acid
Length = 357
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 492 RGTSDEVESRHGDL------RSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGE 545
+GT E+ HG RSI+ AV ++ T+ TD + L VL + G
Sbjct: 7 QGTPFEIGYEHGSAAKAVIARSIDFAV----DLIRGKTKKTD------EELKQVLSQLGR 56
Query: 546 KLHYSWPSILELLRSVADASEKDL 569
+ WP E +R +A +E+D+
Sbjct: 57 VIEERWPKYYEEIRGIAKGAERDV 80
>pdb|2X1C|A Chain A, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|B Chain B, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|C Chain C, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
pdb|2X1C|D Chain D, The Crystal Structure Of Precursor Acyl Coenzyme
A:isopenicillin N Acyltransferase From Penicillium
Chrysogenum
Length = 357
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 492 RGTSDEVESRHGDL------RSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGE 545
+GT E+ HG RSI+ AV ++ T+ TD + L VL + G
Sbjct: 7 QGTPFEIGYEHGSAAKAVIARSIDFAV----DLIRGKTKKTD------EELKQVLSQLGR 56
Query: 546 KLHYSWPSILELLRSVADASEKDL 569
+ WP E +R +A +E+D+
Sbjct: 57 VIEERWPKYYEEIRGIAKGAERDV 80
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 41/159 (25%)
Query: 783 LVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEV-SLAAINCLQTTV 841
L ++GG+ R ++ F W +H + +++L+ + EV + ++CL T +
Sbjct: 69 LAAMVGGLFRNIKYNLDF----------WRKNVH-MNDNVLHSAFEVGARKVVSCLSTCI 117
Query: 842 LSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFD- 900
T P+ E + P ++ N Y A++M D
Sbjct: 118 FPDKT--TYPID---------ETMIHNGPPHNSNFG--------------YSYAKRMIDV 152
Query: 901 -DRMYGQLLAIIDLAVRQTMI--THDNYEIEFGHVPPVL 936
+R Y Q AV T + HDN+ IE GHV P L
Sbjct: 153 QNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGL 191
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 41/159 (25%)
Query: 783 LVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEV-SLAAINCLQTTV 841
L ++GG+ R ++ F W +H + +++L+ + EV + ++CL T +
Sbjct: 68 LAAMVGGLFRNIKYNLDF----------WRKNVH-MNDNVLHSAFEVGARKVVSCLSTCI 116
Query: 842 LSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFD- 900
T P+ E + P ++ N Y A++M D
Sbjct: 117 FPDKT--TYPID---------ETMIHNGPPHNSNFG--------------YSYAKRMIDV 151
Query: 901 -DRMYGQLLAIIDLAVRQTMI--THDNYEIEFGHVPPVL 936
+R Y Q AV T + HDN+ IE GHV P L
Sbjct: 152 QNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGL 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,200,144
Number of Sequences: 62578
Number of extensions: 1410013
Number of successful extensions: 3361
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3361
Number of HSP's gapped (non-prelim): 7
length of query: 1361
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1250
effective length of database: 8,027,179
effective search space: 10033973750
effective search space used: 10033973750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)