Query 000670
Match_columns 1361
No_of_seqs 275 out of 632
Neff 7.2
Searched_HMMs 46136
Date Mon Apr 1 21:41:10 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1848 Uncharacterized conser 100.0 6E-117 1E-121 1081.2 55.0 1229 4-1348 314-1608(1610)
2 PLN03076 ARF guanine nucleotid 100.0 1.4E-86 3.1E-91 877.5 73.4 583 200-868 868-1513(1780)
3 KOG0929 Guanine nucleotide exc 100.0 7.4E-56 1.6E-60 562.1 28.3 536 200-867 760-1321(1514)
4 KOG0928 Pattern-formation prot 100.0 2.6E-34 5.6E-39 358.1 49.9 558 202-863 735-1354(1386)
5 PF09324 DUF1981: Domain of un 99.5 1.7E-14 3.8E-19 134.9 6.3 78 503-580 9-86 (86)
6 KOG1846 Uncharacterized conser 99.4 2.7E-10 6E-15 136.7 36.2 437 371-862 846-1350(1777)
7 PF12783 Sec7_N: Guanine nucle 99.3 2.4E-12 5.2E-17 137.0 9.2 76 21-96 91-168 (168)
8 KOG1848 Uncharacterized conser 98.9 1.2E-07 2.5E-12 121.1 25.8 562 8-629 270-920 (1610)
9 COG5307 SEC7 domain proteins [ 98.9 1.5E-08 3.4E-13 131.0 15.8 509 204-842 491-1011(1024)
10 PLN03076 ARF guanine nucleotid 98.8 0.00049 1.1E-08 95.0 54.4 92 16-108 422-516 (1780)
11 PF01602 Adaptin_N: Adaptin N 93.0 32 0.0007 43.3 30.5 145 424-604 55-201 (526)
12 KOG0929 Guanine nucleotide exc 91.0 0.16 3.6E-06 68.6 3.7 94 15-109 340-435 (1514)
13 KOG1062 Vesicle coat complex A 80.7 1.9E+02 0.0042 37.8 30.6 45 572-620 293-337 (866)
14 PF01602 Adaptin_N: Adaptin N 80.7 1.7E+02 0.0036 36.9 23.3 255 446-843 230-484 (526)
15 PF12348 CLASP_N: CLASP N term 78.9 96 0.0021 34.4 17.6 176 426-630 27-211 (228)
16 PF11864 DUF3384: Domain of un 76.0 80 0.0017 39.5 17.3 139 382-562 207-353 (464)
17 PF02985 HEAT: HEAT repeat; I 74.9 5.5 0.00012 29.8 4.1 28 686-713 2-29 (31)
18 PF14500 MMS19_N: Dos2-interac 68.9 74 0.0016 36.6 13.5 75 526-603 96-171 (262)
19 KOG2171 Karyopherin (importin) 67.5 4.6E+02 0.01 35.9 24.3 162 435-627 28-190 (1075)
20 PF03378 CAS_CSE1: CAS/CSE pro 65.6 3.4E+02 0.0074 33.7 23.6 277 442-826 66-352 (435)
21 PF02985 HEAT: HEAT repeat; I 63.8 15 0.00032 27.4 4.4 29 448-476 1-29 (31)
22 KOG2160 Armadillo/beta-catenin 63.7 1.4E+02 0.003 35.6 14.3 116 442-585 123-243 (342)
23 PF12348 CLASP_N: CLASP N term 63.4 1E+02 0.0022 34.1 13.2 113 440-580 87-204 (228)
24 KOG2023 Nuclear transport rece 62.4 1.1E+02 0.0023 39.1 13.5 132 426-581 151-284 (885)
25 KOG1949 Uncharacterized conser 61.5 1.5E+02 0.0032 38.1 14.5 110 694-844 184-294 (1005)
26 KOG1248 Uncharacterized conser 57.2 3.9E+02 0.0085 36.6 18.1 126 455-603 662-793 (1176)
27 KOG1824 TATA-binding protein-i 56.3 6.6E+02 0.014 33.9 23.8 281 522-861 15-306 (1233)
28 PF12717 Cnd1: non-SMC mitotic 54.4 1.1E+02 0.0024 32.8 11.1 91 440-560 18-109 (178)
29 KOG1824 TATA-binding protein-i 53.2 5.3E+02 0.012 34.7 17.7 220 369-606 435-662 (1233)
30 PF08427 DUF1741: Domain of un 52.4 3E+02 0.0066 31.2 14.2 66 677-742 58-134 (237)
31 PF12719 Cnd3: Nuclear condens 51.1 1E+02 0.0022 36.2 10.8 29 696-724 76-105 (298)
32 KOG2023 Nuclear transport rece 49.8 1.1E+02 0.0023 39.2 10.7 162 442-624 123-284 (885)
33 cd00020 ARM Armadillo/beta-cat 49.0 54 0.0012 31.7 7.0 74 448-544 8-81 (120)
34 KOG1248 Uncharacterized conser 48.9 9.1E+02 0.02 33.4 35.3 332 441-946 91-422 (1176)
35 PF11864 DUF3384: Domain of un 47.3 6.7E+02 0.015 31.4 17.9 40 566-607 190-229 (464)
36 PF12719 Cnd3: Nuclear condens 46.2 4.2E+02 0.009 31.0 15.0 103 446-576 26-137 (298)
37 PF11640 TAN: Telomere-length 44.9 2.1E+02 0.0045 30.1 11.0 123 693-843 13-141 (155)
38 PF12755 Vac14_Fab1_bd: Vacuol 43.6 1.3E+02 0.0028 29.2 8.3 73 591-712 23-95 (97)
39 KOG0166 Karyopherin (importin) 42.9 2.9E+02 0.0064 34.8 13.2 213 450-742 155-375 (514)
40 PF12717 Cnd1: non-SMC mitotic 41.7 3.1E+02 0.0067 29.4 12.0 137 460-630 1-137 (178)
41 PF10521 DUF2454: Protein of u 41.5 6.2E+02 0.013 29.4 16.1 155 679-867 114-275 (282)
42 KOG1993 Nuclear transport rece 39.2 1.1E+03 0.023 31.4 17.2 117 685-847 527-649 (978)
43 PF09324 DUF1981: Domain of un 37.7 71 0.0015 30.2 5.5 53 781-839 33-85 (86)
44 PF05004 IFRD: Interferon-rela 35.9 8E+02 0.017 29.0 18.6 156 780-947 57-214 (309)
45 PF12783 Sec7_N: Guanine nucle 34.9 3.5E+02 0.0077 28.6 11.0 87 390-478 8-104 (168)
46 PF10521 DUF2454: Protein of u 34.3 7.9E+02 0.017 28.5 15.9 67 775-845 85-151 (282)
47 KOG1766 Enhancer of rudimentar 32.1 68 0.0015 30.5 4.1 49 774-822 14-65 (104)
48 PF04826 Arm_2: Armadillo-like 31.9 7E+02 0.015 28.6 13.3 145 452-630 59-210 (254)
49 KOG2171 Karyopherin (importin) 28.8 1.7E+03 0.038 30.7 32.6 383 443-914 385-784 (1075)
50 PLN03200 cellulose synthase-in 28.5 1.5E+03 0.034 33.8 18.1 260 448-841 1529-1804(2102)
51 PF08767 CRM1_C: CRM1 C termin 28.1 9.7E+02 0.021 28.4 14.2 115 513-629 73-198 (319)
52 PF11640 TAN: Telomere-length 27.8 4E+02 0.0087 27.9 9.8 103 527-629 19-141 (155)
53 PF12755 Vac14_Fab1_bd: Vacuol 24.9 1.8E+02 0.0039 28.1 6.0 69 511-581 27-95 (97)
54 smart00802 UME Domain in UVSB 23.5 3.7E+02 0.0081 26.6 7.9 76 525-606 28-103 (107)
55 KOG0946 ER-Golgi vesicle-tethe 23.3 4.4E+02 0.0095 34.7 10.2 97 523-622 34-148 (970)
56 KOG1241 Karyopherin (importin) 22.1 1.9E+03 0.042 29.0 20.5 269 448-840 3-286 (859)
57 PF08064 UME: UME (NUC010) dom 21.7 2.8E+02 0.006 27.3 6.7 77 523-605 26-102 (107)
58 KOG2956 CLIP-associating prote 21.5 9E+02 0.02 30.1 11.9 113 684-840 287-399 (516)
59 PF08767 CRM1_C: CRM1 C termin 21.3 5.2E+02 0.011 30.6 10.2 116 695-846 82-198 (319)
60 PF01133 ER: Enhancer of rudim 20.7 45 0.00098 32.5 0.9 48 775-822 15-65 (102)
No 1
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.4e-117 Score=1081.19 Aligned_cols=1229 Identities=30% Similarity=0.363 Sum_probs=935.9
Q ss_pred ccccccCCCCCCCCchh--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCcchHHHHHHHHHhhhccChHHHHH
Q 000670 4 LRTNVENEGETGEPYFR--RLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEARTLRL 81 (1361)
Q Consensus 4 ~~~~~~~~~~~~~p~F~--~~~~Ri~~~ll~~~~~~L~~E~Ei~LslLi~~ld~d~p~W~RvL~LEv~r~l~~d~~llr~ 81 (1361)
++.|--+-+-.++.+|| .++.|.+.+.+..|.+.+..+|+||++.+.++-+.|.+.|+|.+.+|+.|+++.+++.++.
T Consensus 314 lisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l~~~~~~siv~k~dsi~~ 393 (1610)
T KOG1848|consen 314 LISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFLDFLFLKSIVPKNDSIQI 393 (1610)
T ss_pred HHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHhHHHhhccCCCCchhhHH
Confidence 44455556678888888 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCcchHHHHHHHHHHHHhhhccc-------cchhhhhhhccc-cccccccceEeeeccccccccccccchh
Q 000670 82 LFQNFDMNPKNTNVVEGMVKALARVVSSVQFQ-------ETSEESLSAVAG-MFSSKAKGIEWILDNDASNAAVLVASEA 153 (1361)
Q Consensus 82 i~~~YD~~~~~k~I~~~l~~~l~~~~~~~~~~-------~~~~~s~~~~~g-~~~sk~~gi~~sl~~d~~~~~~~~~~~~ 153 (1361)
+++++|++++.+|+|...+..+.+++....+. +...++.+.++| .+.+|..||+|-.+.|+.....++--+.
T Consensus 394 ~trn~diktk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~k~k~Ie~~~dnds~stavl~~l~~ 473 (1610)
T KOG1848|consen 394 FTRNFDIKTKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTSKEKGIELREDNDSMSTAVLLQLSF 473 (1610)
T ss_pred HHhhcccCcchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchhhhcCceeeccCchHHHHHHHHHHh
Confidence 99999999999999999999999999865322 233334445566 7788889999876655543333322233
Q ss_pred hhHHHHHHHHHHHHHHHhcccccccccCCCCCCCCCCCCCCCccc-chhHHHHHHHHHhhHHHHHHHHhhhhccCCHHHH
Q 000670 154 HSITLAIEGLLGVVFTVATLTDEAVDVGELESPRCDYDPLPKCMG-ETAVLCISMVDSLWLTILDALSLILSRSQGEAII 232 (1361)
Q Consensus 154 ~~i~~~~e~L~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~m~~~~W~~lLaalS~~L~~s~De~~~ 232 (1361)
-.+.++.||+.++.++|+.+...+.+.+....+.....+.....+ ...++...|+.+.|..++++++-.+..+.|+.+.
T Consensus 474 ~~~~li~e~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~~a~~snq~tildalks~l~~st~e~is 553 (1610)
T KOG1848|consen 474 SNKVLIPEGLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIFDAVLSNQSTILDALKSTLPESTDEIIS 553 (1610)
T ss_pred hhhhhccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHHHHHhhccccHHHHhhhhccccccchhh
Confidence 334455566666666666655444333322222211111111112 2455667789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCcccccc-cccCCCCCc---cc-------------------
Q 000670 233 LEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSA-VLQSPGSKR---SE------------------- 289 (1361)
Q Consensus 233 ~~lL~gfq~~a~vag~L~L~~~rDafl~sL~k~t~~~~~~~~~~~~-~~~~pgs~~---~~------------------- 289 (1361)
+.++.+++.++..||+.+-+++..+++..||++....+........ +.++|..++ ++
T Consensus 554 ~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p 633 (1610)
T KOG1848|consen 554 AQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSP 633 (1610)
T ss_pred HHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhhccccCccccccCCcceEEEEeeccceeeEecCCC
Confidence 9999999999999999999999999999999999754322111000 001111110 00
Q ss_pred ----ccccccCCcCCChhHHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHhHHhhcC-CCCCccccccccccccccc---
Q 000670 290 ----SLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHS-PHATTQEVSTASSKLARES--- 361 (1361)
Q Consensus 290 ----~~~~~~~~~~l~~Kni~~lraLlnla~~lG~~L~~SW~~IL~tlq~ld~~~~~-p~~~~~~~~~~~p~~~~~~--- 361 (1361)
+.+-+..++.++.||+++.|+++++++.+-+.++.+|..++.|...+|+..+. |..+.+.+.+..+.-+.+.
T Consensus 634 ~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~~ls~~~~m~p~qt~l~v~t~~~~hp~~p~~~ 713 (1610)
T KOG1848|consen 634 TSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMYTTSSLSQPAYMEPLQTLLAVITSSSVHPIQPLTA 713 (1610)
T ss_pred CCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcchhhcCHHHhhHHHHhcCCCCCCCcchh
Confidence 01112366889999999999999999999999999999999999999998765 5554443333222222211
Q ss_pred -cCccchhhHHHHHHHhHhhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCeeeeHHHHHHHHHhhccc
Q 000670 362 -SGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR 440 (1361)
Q Consensus 362 -~~~~~dl~il~~i~~~LFesS~~L~~~a~~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~N~~R 440 (1361)
..+++|..+++++.+++|++++.++..++..+++||..++.+.+.... ++..|..|
T Consensus 714 ~~~~ynd~~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~-----------------------~~~~sslr 770 (1610)
T KOG1848|consen 714 PRQSYNDDLLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILET-----------------------VCSCSSLR 770 (1610)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh-----------------------hccccccc
Confidence 134678889999999999999999999999999999999988764432 12334568
Q ss_pred chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHh
Q 000670 441 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 520 (1361)
Q Consensus 441 ~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 520 (1361)
....|..+..|+.....++|+..+..|++.|++.+...+++..+...+.+......++..+...+..-+.+++..+...+
T Consensus 771 ~~~~~l~v~~~~~~l~e~snq~~~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~ 850 (1610)
T KOG1848|consen 771 FLDSKLDVSGWSLILKELSNQFKIINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSD 850 (1610)
T ss_pred cccchhhhhHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888877766543444433333333222233333446666666667
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcc---cchhHHHHHHHHHHHHHhccCCCCChhhHHHHH
Q 000670 521 FSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADA---SEKDLITLGFQSLRFIMNDGLSSIPTDCIHECV 597 (1361)
Q Consensus 521 ~~~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~---~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI 597 (1361)
..++.+|+|...+++|.+|+|+.|+.+-+||..||++|+++++. +++++|+.||+||++|++|||++||.+|+..||
T Consensus 851 ~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~li 930 (1610)
T KOG1848|consen 851 NSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLI 930 (1610)
T ss_pred hcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHH
Confidence 78899999999999999999999999999999999999998763 588999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhccccccccCCCCcch
Q 000670 598 DVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVD 677 (1361)
Q Consensus 598 ~tL~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 677 (1361)
|++..|++|++|+||||||||+||+++||+++++. +..++.+..+ ..|...+. .+.+-..
T Consensus 931 dtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~--S~sed~~~~~------------~~e~~~ss------~~~~~~l 990 (1610)
T KOG1848|consen 931 DTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMF--STSEDSCAYN------------SVEDLYSS------MKSKEIL 990 (1610)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhh--ccchhhhhhc------------chhhhccc------ccchhhh
Confidence 99999999999999999999999999999998422 1111111000 01111111 1122245
Q ss_pred hhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccC
Q 000670 678 RDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELG 757 (1361)
Q Consensus 678 ~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~~~~~~ 757 (1361)
++.+|+.||.+|.++|.|+|+||||||+||||||+++||+.|++.+|+.|+|+|++|||+...... .++|+|+++
T Consensus 991 ~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~----~~ewngkei- 1065 (1610)
T KOG1848|consen 991 PEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN----VSEWNGKEI- 1065 (1610)
T ss_pred hhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc----hhhhcchhH-
Confidence 789999999999999999999999999999999999999999999999999999999999886432 367877653
Q ss_pred CCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 000670 758 TRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCL 837 (1361)
Q Consensus 758 ~~~~~~~~~~ihhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~a~~~sL 837 (1361)
||||.||.+++++|++|+|..||..|..+++|.+.|+.+|+|+.+++...+++++.++++||
T Consensus 1066 ------------------qkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~ 1127 (1610)
T KOG1848|consen 1066 ------------------QKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKAL 1127 (1610)
T ss_pred ------------------hhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCChh---HHHHHHHHHHHhhcCCCCCCCCCCccchHHHHHHHHHHHH--HHHhhCCHHHHHHHHHHHH
Q 000670 838 QTTVLSHSTKGNLPVA---YLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYV--QAQKMFDDRMYGQLLAIID 912 (1361)
Q Consensus 838 ~~lL~~~~~~~~~~~~---~~~~~~~~w~~i~~~~~~~~~~~~~~~~qe~l~~f~~ly~--~~~~~~~~~~~~~~l~il~ 912 (1361)
|+++......++++.. ....++..|+.+++.++.+..++.+++.||.+++|+..|+ .+++.+..+.++..+..++
T Consensus 1128 qell~sii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vqs~sk~d~~~~e~~~~slll~~ 1207 (1610)
T KOG1848|consen 1128 QELLFSIIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQSLSKADNFGIEEIKDSLLLVR 1207 (1610)
T ss_pred HHHHHHHhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHHHHHhhcchhHHHHHHHHHHhh
Confidence 9999999988887765 6677788898888877766666678999999999999988 5667888999999999999
Q ss_pred HHHHcccCCCCCCccccCCCCHHHHHHHHhccccCCCcccchhHHHHHHHHHhhcCCCCCCC--CccCCCCCCCCCCCcc
Q 000670 913 LAVRQTMITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPL--QKKEDEEEPPSTSDNI 990 (1361)
Q Consensus 913 ~~~~~p~~~~~~~~~d~~~~s~lQ~~vl~~l~~i~~~~~~~~~~~~~~~~l~~f~~~~~~~~--~~~~~~~~~~~t~~~~ 990 (1361)
.++.||.++. +..|.++ +|+|.+|++.++.+-+++ ...+|..+++.-.-+.+.++.-. ++.. .++. |-.+..
T Consensus 1208 kai~yp~~~~--ft~d~hv-psvq~avls~ld~l~~~~-~~~~~lvLl~~sthltpafdt~l~~~k~~-~~g~-~~~e~~ 1281 (1610)
T KOG1848|consen 1208 KAIFYPESTS--FTLDVHV-PSVQLAVLSLLDLLISDK-FKLNHLVLLLWSTHLTPAFDTRLKITKKL-GPGL-PKEEKT 1281 (1610)
T ss_pred hccccCCCch--hhhhccC-ChHHHHHHhhcchhccCc-cccchhHHHHHhhhhhhhhhhhhhhhhcc-CCCC-chhhhc
Confidence 9999998877 8888877 889999999999998844 45565666666555665555311 1111 0000 000000
Q ss_pred cccccccccCCCCCCCCCCcchhhhhhhccCCccccchhHHHHhhhHHHHHHHhhhcchhhhhhhhHHHHHhhccccccc
Q 000670 991 HDVHVRTKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTR 1070 (1361)
Q Consensus 991 ~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~p~~~~~~~~~~ii~~l~~~~~~k 1070 (1361)
.++...+ | ..-...+.-++++.++-....+++.+.+.++--+++...-+.+++-+.
T Consensus 1282 ~das~et---------------l---------~~~s~~t~rna~nkv~~~g~~~l~a~a~~~i~~f~ev~~rlkr~~~t~ 1337 (1610)
T KOG1848|consen 1282 IDASLET---------------L---------ICLSKKTFRNAENKVENHGLDFLNAGAMQHIFEFLEVPMRLKRRCPTA 1337 (1610)
T ss_pred ccchhhh---------------h---------HHhhHHHhhhchhhhchhhHHHHhhhHHHHHHhhHHHHHHHHHHcccc
Confidence 0000000 0 000112333777777777666777666655554444444444333333
Q ss_pred -CCCCCCccHHHHHHHHHHHHHHhHHHHhhhcccc-----ccCChHHHHHhHHHHHHHhhhhhccCCC-C--CCCCCCCC
Q 000670 1071 -RDNPDSSLWRLAVEGFNHILVDDVTKLAANFWQD-----MKISRPARLRVWKEVADVYEIFLVGYCG-R--ALPSNSLS 1141 (1361)
Q Consensus 1071 -y~~~~~~lWk~At~~~l~il~~~l~~~~~~~~~~-----~~~~~~~~~~~W~~vvd~~~~~l~~~~~-~--~~~~~~~~ 1141 (1361)
+.+|+.|+|++|..+|++..-.+........... +.+...+...+|++.-|+.++++.++|+ + +..+..++
T Consensus 1338 ~r~npe~piwvlas~cF~~l~~~~fk~l~~~~~~~laet~l~lflt~~it~~rinpevd~~~~~~~cd~e~~~~ksl~l~ 1417 (1610)
T KOG1848|consen 1338 SRVNPELPIWVLASKCFVRLMINCFKDLKGSDAIELAETMLCLFLTVEITNSRINPEVDYEYVWSLCDFENSSLKSLHLL 1417 (1610)
T ss_pred cccCCCCceeeeeHhhHHhhHHHHHHHhccccccchhhhhhheeeEEEeeeeeeCcchhhhhhhhhcccccchhhhhhhc
Confidence 6667899999999999999988876654431100 0122234456788888889999988887 3 23344556
Q ss_pred hhhccccchhhhhHHHHHhhhcccCCCCCCChHHHHhhHHHhhhcccCCCCCCccccccCccc--hhhhHHHHHHHHHhh
Q 000670 1142 AVALSGADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAH--CSKFSLACLHKLFSL 1219 (1361)
Q Consensus 1142 ~~~~~~~dE~~di~~~~~l~~~i~~~~~~~p~~~~~~l~~l~~~~~~r~~~~~~~t~~~~~~~--r~r~s~~c~d~Lf~l 1219 (1361)
+...+ .+|.+++++++.++++++.+..|.|.+..+|+.+++++++.| ++.++.+.+..|++ |-|.+|.||+.||+.
T Consensus 1418 a~~~l-~ne~led~~i~~~~d~~l~~~~d~prn~l~rlistl~r~sqk-~ss~~fs~~~~~~hn~Rf~la~~Cf~~ll~d 1495 (1610)
T KOG1848|consen 1418 AKPHL-QNECLEDEVIQYYIDLCLGSFYDQPRNTLDRLISTLNRDSQK-ASSNFFSSTESPVHNRRFRLAVDCFSILLDD 1495 (1610)
T ss_pred cchhh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHh-hhccCccccccCccChhHHHHHHHHHHHHHh
Confidence 66778 899999999999999999999999999999999999999988 66666665555554 555677799999987
Q ss_pred hcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCChhHHHHHHHHHHHHHhcccCcccccCCCCCc
Q 000670 1220 SSSDNEASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKIHPDTASALPLHP 1299 (1361)
Q Consensus 1220 ~s~~~~~~~~~~~~~~la~~a~p~Ll~Rc~~~L~~yi~D~~lrG~~P~Pr~r~~El~~vL~~l~~L~~~~~~~~~~~~~~ 1299 (1361)
+.. ..+..|..++++++|+|+.||+.+|+||++||...|+.|+|+.|..||+++|++|..|.... +..|
T Consensus 1496 s~s-----~~~ntr~~vsk~~~p~L~aRc~~~Lsry~~Des~~G~lplpksr~~Eiit~lq~l~~l~~~L------~~np 1564 (1610)
T KOG1848|consen 1496 SNS-----SYENTREKVSKTIRPILQARCCWSLSRYVADESVSGYLPLPKSREMEIITVLQCLNNLPSLL------YSNP 1564 (1610)
T ss_pred cch-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHhhcc------ccCc
Confidence 753 12348999999999999999999999999999999999999999999999999999999883 1222
Q ss_pred ccccccccCcCCCcccchhhhhhchhhheecchhHHHHHHHHH--HHHHhh
Q 000670 1300 VLKSGLAMDENSDKRPHLLVLFPSFCELVISREARVRELVQVL--LRLITK 1348 (1361)
Q Consensus 1300 ~~~~~~~~~~~~~~~~hL~~lyP~l~~~~~~~~~~v~~ll~~~--l~~vg~ 1348 (1361)
.+ .+..++.||..|+|.+|+.++++.+++....|.+ .+.+.+
T Consensus 1565 ~l-------~n~~~~~hl~~lsPs~~~~~p~~h~~~~l~~qvL~~i~~~~t 1608 (1610)
T KOG1848|consen 1565 IL-------YNLRKAYHLTNLSPSATSLNPAIHGQLTLKNQVLNAILGFTT 1608 (1610)
T ss_pred hh-------hhHHHHHHHHhccHHHHhhhhhhhcccHHHHHHHHHHHhhhc
Confidence 21 1267899999999999999988877766555543 444443
No 2
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=1.4e-86 Score=877.45 Aligned_cols=583 Identities=22% Similarity=0.341 Sum_probs=472.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCccccccc
Q 000670 200 TAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAV 279 (1361)
Q Consensus 200 ~~~~~~~m~~~~W~~lLaalS~~L~~s~De~~~~~lL~gfq~~a~vag~L~L~~~rDafl~sL~k~t~~~~~~~~~~~~~ 279 (1361)
+..++++||+.+|+|+|||+|..|+.++|+++++.||+||+.++|+||.+||+++||+|+++|||||.+..
T Consensus 868 ~~~~~~~mfe~~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~--------- 938 (1780)
T PLN03076 868 DVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHS--------- 938 (1780)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCC---------
Confidence 45578999999999999999999999999999999999999999999999999999999999999998741
Q ss_pred ccCCCCCcccccccccCCcCCChhHHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHhHHhhcCCCCCc------------
Q 000670 280 LQSPGSKRSESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATT------------ 347 (1361)
Q Consensus 280 ~~~pgs~~~~~~~~~~~~~~l~~Kni~~lraLlnla~~lG~~L~~SW~~IL~tlq~ld~~~~~p~~~~------------ 347 (1361)
| ..++.||++|+|+||+||+..||+|++||++||+|+++++++...+....
T Consensus 939 ---~--------------~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~ 1001 (1780)
T PLN03076 939 ---P--------------ADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNE 1001 (1780)
T ss_pred ---h--------------hhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhcccccc
Confidence 1 12789999999999999999999999999999999999999864221100
Q ss_pred -----cccccccccccc------------------cc-------cCc--cchh-------hHH----HHHHHhHhhhccC
Q 000670 348 -----QEVSTASSKLAR------------------ES-------SGQ--YSDF-------NVL----SSLNSQLFESSAL 384 (1361)
Q Consensus 348 -----~~~~~~~p~~~~------------------~~-------~~~--~~dl-------~il----~~i~~~LFesS~~ 384 (1361)
+......|...+ ++ .+. .+++ .++ ...++++|++|++
T Consensus 1002 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~ 1081 (1780)
T PLN03076 1002 SDKSKQAKSPILPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQK 1081 (1780)
T ss_pred cccccccccccccccccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhccc
Confidence 000001111100 00 000 0111 111 1235999999999
Q ss_pred CChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCeeeeHHHHHHHHHhhccc----chhhHHHHHHHHHHHhcCCC
Q 000670 385 MHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----VEPLWDQVVGHFLELADNSN 460 (1361)
Q Consensus 385 L~~~a~~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~N~~R----~~~iW~~l~~hli~v~~~~n 460 (1361)
|+++||++|++|||++|.++++.+. .|++|+|+||+||+++||+| |..+|+.+.+||++++||+|
T Consensus 1082 L~~eai~~fv~AL~~vS~eEl~~~~-----------~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n 1150 (1780)
T PLN03076 1082 LNSEAIIDFVKALCKVSMEELRSPS-----------DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSEN 1150 (1780)
T ss_pred CCHHHHHHHHHHHHHhhHHHHccCC-----------CCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999987642 46899999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHH
Q 000670 461 QHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVL 540 (1361)
Q Consensus 461 ~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~eIr~~iL~~L~~iL 540 (1361)
..+|.+|+|+|+|+.+++++.+ +..++.||+.||+||+.++..+.+.+||++|++|+.+|+
T Consensus 1151 ~~va~fAidsLrQLs~kfle~e-------------------EL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI 1211 (1780)
T PLN03076 1151 LSIAIFAMDSLRQLSMKFLERE-------------------ELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMV 1211 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcchh-------------------hhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 9999999999999999999653 234678999999999999999999999999999999999
Q ss_pred HhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCC---hhhHHHHHHHHHHHHhcCCCcchhHHHH
Q 000670 541 ERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIP---TDCIHECVDVTGAYSSQKTELNISLTAV 617 (1361)
Q Consensus 541 ~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp---~~~~~~lI~tL~~F~~q~~dlNISLtAi 617 (1361)
++++++|++||++||++|+.++.++++.+|+.||+++++|++||++.+| .+||.+||+||.+|++|+.++||||+||
T Consensus 1212 ~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI 1291 (1780)
T PLN03076 1212 LSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAI 1291 (1780)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHH
Confidence 9999999999999999999999999999999999999999999999776 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhccccccccCCCCcchhhhhHHHHHHHHHhhccCCC
Q 000670 618 GLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADER 697 (1361)
Q Consensus 618 ~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R 697 (1361)
++||.|++++.+..... . .+........+.. .......+ ... ......+...+|+|||.+|.++|.|+|
T Consensus 1292 ~lL~~~~~~La~~~~~~-~-~~~~~~~~~~~~s-~~~~~~~~-~~~-------~~~~~~~~~~lW~pLL~~Ls~l~~D~R 1360 (1780)
T PLN03076 1292 AFLRFCATKLAEGDLGS-S-SRNKDKEAPPSSP-QSGKDGKQ-ESG-------EFTDKDDHLYFWFPLLAGLSELSFDPR 1360 (1780)
T ss_pred HHHHHHHHHHHhccccc-c-ccccccccccccc-cccccccc-ccc-------ccccchhHHHHHHHHHHHHHHHhcCCc
Confidence 99999999998642110 0 0000000000000 00000000 000 001123345899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCCCCCccchhhcccccchhhh
Q 000670 698 PEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQK 777 (1361)
Q Consensus 698 ~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~ihhsr~~~~k 777 (1361)
+|||++|++|||+||.+||+.|++++|+.||++||||||+.++.........++++.+++. .| .+.+.+
T Consensus 1361 lEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~----------~~-~~~e~~ 1429 (1780)
T PLN03076 1361 PEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDG----------DQ-GELDQD 1429 (1780)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc----------cc-cchhhh
Confidence 9999999999999999999999999999999999999999998543332212222222211 11 135678
Q ss_pred hHH-HHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhcCCCCCChhHHH
Q 000670 778 QWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLN 856 (1361)
Q Consensus 778 ~W~-ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~a~~~sL~~lL~~~~~~~~~~~~~~~ 856 (1361)
+|. ||++++++|+++||.+||+.|. .+-..+|+.+..|++++++.++..+.+||++++..++.++ .++.|+
T Consensus 1430 ~Wl~eT~~~AL~~lvdLft~fFd~L~------~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F--~~~~W~ 1501 (1780)
T PLN03076 1430 AWLYETCTLALQLVVDLFVKFYPTVN------PLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLF--SDEKWL 1501 (1780)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccC--CHHHHH
Confidence 996 9999999999999999998774 2556789999999999999999999999999999999887 489999
Q ss_pred HHHHHHHHhhcC
Q 000670 857 SVLDVYEYALQK 868 (1361)
Q Consensus 857 ~~~~~w~~i~~~ 868 (1361)
.+.+...+++..
T Consensus 1502 ~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1502 EVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHH
Confidence 999988876653
No 3
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-56 Score=562.12 Aligned_cols=536 Identities=22% Similarity=0.349 Sum_probs=453.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCccccccc
Q 000670 200 TAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAV 279 (1361)
Q Consensus 200 ~~~~~~~m~~~~W~~lLaalS~~L~~s~De~~~~~lL~gfq~~a~vag~L~L~~~rDafl~sL~k~t~~~~~~~~~~~~~ 279 (1361)
++.++++||+.+|.|.++|++..|..++|......|++||+...|+++.++++..||||+++|.+||.++..
T Consensus 760 h~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~cl~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~-------- 831 (1514)
T KOG0929|consen 760 HLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANLCLDGFRLAISIASIFSMELGRDAFVQALARFTNLHAP-------- 831 (1514)
T ss_pred cceeeeccccccccchhhhhchhhhcCCccccccccccchhheeeehhhhcCCccccHHHHHHHHHHhccCH--------
Confidence 566889999999999999999999999999999999999999999999999999999999999999987411
Q ss_pred ccCCCCCcccccccccCCcCCChhHHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHhHHhhcCCCCCccc---------c
Q 000670 280 LQSPGSKRSESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQE---------V 350 (1361)
Q Consensus 280 ~~~pgs~~~~~~~~~~~~~~l~~Kni~~lraLlnla~~lG~~L~~SW~~IL~tlq~ld~~~~~p~~~~~~---------~ 350 (1361)
..+..||+.++|+++.||+..||+|+.+|+.|+.|+.+++++...+...+.. .
T Consensus 832 ------------------~e~k~kNi~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~qli~sg~~~~~~~~~~s~~~ 893 (1514)
T KOG0929|consen 832 ------------------SEMKQKNIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHTQLIGSGSPPNKLPFVVSQRE 893 (1514)
T ss_pred ------------------HHHhHhhHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHHHHhcCCCCcccCcchhhhch
Confidence 1278999999999999999999999999999999999999985433221110 0
Q ss_pred cccccc--c---ccc----ccCccchhhHHHHHHHhHhhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCC
Q 000670 351 STASSK--L---ARE----SSGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIG 421 (1361)
Q Consensus 351 ~~~~p~--~---~~~----~~~~~~dl~il~~i~~~LFesS~~L~~~a~~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~ 421 (1361)
....|+ . +.. ..+....+..+-++ +++|++|..++.+++++|++|||++|.+++..+. .
T Consensus 894 ~~~~~~~~~~~~~~~s~~e~~~~~~s~s~vi~~-d~Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s~~-----------~ 961 (1514)
T KOG0929|consen 894 DYKKPGGSYDSSGDGSRIENVGEKSSVSVVIQM-DRIFTSSQRLDSEAIVDFVKALCKVSMDELLSPS-----------T 961 (1514)
T ss_pred hccCCcccccccccccchhccccchhHHHHHHh-hhhhcccccCCchHHHHHHHHHHHHHHHHhcCCC-----------C
Confidence 001110 0 000 00111233334444 8999999999999999999999999999987642 4
Q ss_pred CeeeeHHHHHHHHHhhccc----chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchh
Q 000670 422 SISFSVERMISILVNNLHR----VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDE 497 (1361)
Q Consensus 422 ~~~F~L~kL~eva~~N~~R----~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~ 497 (1361)
|++|+++|++||+.+||.| |..+|..+.+||..+++++|..+..+|+|+|+|+.+++++++
T Consensus 962 PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~vg~~~n~~vaifa~DslRQlsmkfle~~--------------- 1026 (1514)
T KOG0929|consen 962 PRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVSVGCNSNESVAIFALDSLRQLSMKFLERS--------------- 1026 (1514)
T ss_pred CCeeecccceeeeccccccchhhHHHHHHHhhhhhhccccCCCCceEEEehhhhHHhhhhhcchh---------------
Confidence 7899999999999999999 799999999999999999999999999999999999998764
Q ss_pred hhhhhhhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHH
Q 000670 498 VESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSL 577 (1361)
Q Consensus 498 ~~~~~~~~~~lq~~ll~pl~~L~~~~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L 577 (1361)
+..++.||+.+++||+.++..+.+++||++|++|+. +++++||+.||.|+..++.+..+.++..+|+.+
T Consensus 1027 ----el~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v 1095 (1514)
T KOG0929|consen 1027 ----ELDNFRFQKDFLRPFEHIMKRSSSAEIRELVVRCIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFETV 1095 (1514)
T ss_pred ----hhhhhhHHHhhcCcchHHhhccCcchhHHHHHhhhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHH
Confidence 345789999999999999999999999999999998 789999999999999999999999999999999
Q ss_pred HHHHhccCCCC-Ch--hhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccC
Q 000670 578 RFIMNDGLSSI-PT--DCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMD 654 (1361)
Q Consensus 578 qlI~~dfL~~L-p~--~~~~~lI~tL~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~ 654 (1361)
.-|..+++... |. ++|.+|+.|+.+|+++....|+++.||.++|.|..++..+ . . . ++-. .
T Consensus 1096 ~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~-~-~-~-~~~~------------~ 1159 (1514)
T KOG0929|consen 1096 SKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEG-V-Y-N-EKLK------------V 1159 (1514)
T ss_pred HHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccc-c-c-h-hhcc------------c
Confidence 99999999764 43 7999999999999999999999999999999999999975 1 1 0 0000 0
Q ss_pred cchhhhhhccccccccCCCCcchhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHh
Q 000670 655 GEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFP 734 (1361)
Q Consensus 655 ~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~~~VLFP 734 (1361)
+. .. ....|...|+|+|.++..++.|.|++||+.|++.+|.|+..||+.|+.++|+.+|. ++||
T Consensus 1160 ~~--------------~~-~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fp 1223 (1514)
T KOG0929|consen 1160 GK--------------DS-EFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFP 1223 (1514)
T ss_pred cc--------------cc-ccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heee
Confidence 00 00 12347789999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHhhhhhhccCCcccccccccCCCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHHHhhhcccccccchHHHHHH
Q 000670 735 MLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWES 813 (1361)
Q Consensus 735 LL~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~ihhsr~~~~k~W~-ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~ 813 (1361)
+|+.+...... +...+|. +|+++|++.++.||.+||+.+. .+-..
T Consensus 1224 IF~~~~~~~~~----------------------------~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~------~lL~~ 1269 (1514)
T KOG0929|consen 1224 IFDNVKLDEDE----------------------------SEKDEWLSTTCNHALQALVDLFTQFFKQLN------NLLPK 1269 (1514)
T ss_pred cccccCcccch----------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 99999643111 1223598 9999999999999999999875 24567
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhhc
Q 000670 814 LLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQ 867 (1361)
Q Consensus 814 lL~~l~~~~~~~~~els~a~~~sL~~lL~~~~~~~~~~~~~~~~~~~~w~~i~~ 867 (1361)
++..+..|+++++..++.++.+||.+++..++.++ .++.|+.+.+....+..
T Consensus 1270 ~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~f--se~~Wde~~~~~~e~~~ 1321 (1514)
T KOG0929|consen 1270 VLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKF--SEEDWDEICNCILEAFK 1321 (1514)
T ss_pred HHHHHHHHhcCcchhhHHhHHHHHHHHHHhccccc--CHhhHHHHHHHHHHHHH
Confidence 88899999999999999999999999999988777 47788877776654443
No 4
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-34 Score=358.10 Aligned_cols=558 Identities=20% Similarity=0.284 Sum_probs=398.0
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCCccccccccc
Q 000670 202 VLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVLQ 281 (1361)
Q Consensus 202 ~~~~~m~~~~W~~lLaalS~~L~~s~De~~~~~lL~gfq~~a~vag~L~L~~~rDafl~sL~k~t~~~~~~~~~~~~~~~ 281 (1361)
.+.++||..+|+|+.||++++|+.+.++++++.|+.|+++++.++..+|+.++.|..+.+|||||.+.+...
T Consensus 735 ~~drdlF~~v~gp~iaals~vFd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~-------- 806 (1386)
T KOG0928|consen 735 VYDRDLFAMVWGPIIAALSYVFDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSS-------- 806 (1386)
T ss_pred hhhHHHHHHHccchHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCcc--------
Confidence 468999999999999999999999999999999999999999999999999999999999999998742221
Q ss_pred CCCCCcccccccccCCcCCChhHHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHhHHhhcCCCCCc------------cc
Q 000670 282 SPGSKRSESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATT------------QE 349 (1361)
Q Consensus 282 ~pgs~~~~~~~~~~~~~~l~~Kni~~lraLlnla~~lG~~L~~SW~~IL~tlq~ld~~~~~p~~~~------------~~ 349 (1361)
+| +. ....++-+.|...+.+|++-+++..|+.++.+|+.|++++.++.+....|.... +.
T Consensus 807 ~~-----ee---l~~~fged~ka~~At~tvf~~~n~~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~~~~~~ 878 (1386)
T KOG0928|consen 807 TP-----EE---LVLAFGEDTKARMATLTVFFGANKFGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPELLKLNK 878 (1386)
T ss_pred Cc-----hH---HHHHhcccchhHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccccccCC
Confidence 00 00 001244578999999999999999999999999999999999988776554310 00
Q ss_pred ccccccc--ccc--cccC-------------------cc-chh-------hHHHHH-HHhHhhhccCCChHHHHHHHHHH
Q 000670 350 VSTASSK--LAR--ESSG-------------------QY-SDF-------NVLSSL-NSQLFESSALMHISAVKSLLSAL 397 (1361)
Q Consensus 350 ~~~~~p~--~~~--~~~~-------------------~~-~dl-------~il~~i-~~~LFesS~~L~~~a~~~fv~AL 397 (1361)
.+.+.+. ..+ .++| +. .++ +.+... .+++|+.++.+..+++.+++++|
T Consensus 879 ~~~~~~~~~~~k~~~ss~Lls~fs~~Ls~d~e~~~~~Ptee~l~~~~~a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sl 958 (1386)
T KOG0928|consen 879 LPVPQQEISINKPRKSSGLLSRFSSYLSGDEEEERPCPTEEELSASKKALECIKECHIDQIFTKSKFLQAKSLLTLLKSL 958 (1386)
T ss_pred CCCCccccCcccccccchHHHHHHHhcCCcccccCCCCcHHHHhhhHHHhhHHHhcCHHHHhhhcccccHHHHHHHHHHH
Confidence 0000000 001 1110 00 112 112221 46799999999999999999999
Q ss_pred HHhhHHhhcCCCCCCCCCCCCCCCCeeeeHHHHHHHHHhhcccchhhHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHH
Q 000670 398 HQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNS---NQHLRNIALDALDQS 474 (1361)
Q Consensus 398 c~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~N~~R~~~iW~~l~~hli~v~~~~---n~~lr~~Avd~L~~l 474 (1361)
...+... +...+.+..|+++.|+.|.+.|.+|+..+|..+.+|+..++..+ ...+.+.|+-.+.++
T Consensus 959 i~~s~~~-----------s~~de~s~~F~lElli~I~l~nrdri~l~w~~~~e~ll~~~~~~~~~~~~lvek~v~gl~rv 1027 (1386)
T KOG0928|consen 959 IAASNDL-----------SMEDEESAVFCLELLIAITLSNRDRILLSWFAVYEHLLGLLIQTLMGSPLLVEKAVSGLLRV 1027 (1386)
T ss_pred HHhcCCc-----------cCcccchHHHHHHHHHHHHhccccceEeeehhhHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Confidence 9887543 11234567999999999999999999999999999999988764 578889999999999
Q ss_pred HHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCcc--CChH
Q 000670 475 ICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLH--YSWP 552 (1361)
Q Consensus 475 i~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~eIr~~iL~~L~~iL~~~g~~L~--sgW~ 552 (1361)
+.+.+..+.|- . +....+++.++.- .....-..-+++-..+.+++..+..+++ .||.
T Consensus 1028 ~~rll~yk~~l---------~------d~l~~sl~~ll~L------~~ki~d~~~~ki~i~~~~lv~~n~~~v~~~~~w~ 1086 (1386)
T KOG0928|consen 1028 VNRLLPYKEFL---------S------DELLDSLRILLKL------DPKILDAFLDKIAIFVSKLVKANAANVHSKDGWA 1086 (1386)
T ss_pred HHHHhhhhhhh---------h------HHHhhhHHHHHhh------cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHH
Confidence 88877643322 0 1122344422211 1111225566777788888888777774 6999
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHccc
Q 000670 553 SILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKT-ELNISLTAVGLLWTTTDFIAKGL 631 (1361)
Q Consensus 553 ~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL~~F~~q~~-dlNISLtAi~llW~isD~L~~~~ 631 (1361)
++|..|..++. +++.--.+|..+-..+.|-.+ ++++.|..||+|...|+...- ...-++..++..-.-+..+.+.
T Consensus 1087 ~~~slL~~~~~--h~~a~~~~~~~~l~~m~e~~h-l~~~~fe~~v~~~~~fve~~~~~~~~~l~~lde~s~sg~~~~kw- 1162 (1386)
T KOG0928|consen 1087 LLFSLLELTAR--HPEADFLKFYRLLSKMSEASH-LTPDNFELYVDCGSTFVEARVGQIMRSLSLLDEMSSSGEVLDKW- 1162 (1386)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHhhcccc-CChHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccccchhHH-
Confidence 99999999887 444444556555555556655 556789999999999998631 1111111111110000000000
Q ss_pred CCCchhhhhhhhcccCCCccccCcchhhhhhccccccccCCCCcchhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 000670 632 VHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQT 711 (1361)
Q Consensus 632 ~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfri 711 (1361)
....|+.. .++.. ..........+|+++++.+.++|.|.|.+|||.|++.|+|+
T Consensus 1163 ---~~~~~~~~----------~~~~~-------------~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~ 1216 (1386)
T KOG0928|consen 1163 ---EIEAKNAT----------ESGDE-------------SKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRI 1216 (1386)
T ss_pred ---HHHHhhhh----------ccccc-------------ccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHH
Confidence 00000000 00000 00111223359999999999999999999999999999998
Q ss_pred HHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCCCCCccchhhcccccchhhhhHHHHHHHHHHHHH
Q 000670 712 LGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIA 791 (1361)
Q Consensus 712 l~s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~ihhsr~~~~k~W~ET~vlaL~gl~ 791 (1361)
+.+-++.|.+..|..||..|+||+++.+.+.....+.. .+ .+++|.+++.+.++
T Consensus 1217 ~~~~~q~l~~~~~~~Cf~~vlfpll~~l~~~l~~~~~~----------------------~~----~me~t~~~~~~Ll~ 1270 (1386)
T KOG0928|consen 1217 IGALDQGLAHSYWNPCFDLVLFPLLTDLLELLSDASEK----------------------GN----EMEVTLLLATKLLS 1270 (1386)
T ss_pred HHhhhcccchHHHHHHHHHHhHHHHHHHHHHhcccccc----------------------cc----hHHHHHHHHhhhhH
Confidence 77889999999999999999999999998654321110 11 47799999999999
Q ss_pred HHHHhhhcccccccchHHHHHHHHHHHHHHHcCCh-----hHHHHHHHHHHHHHHhhhcCCCCCC-------hhHHHHHH
Q 000670 792 RLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS-----KEVSLAAINCLQTTVLSHSTKGNLP-------VAYLNSVL 859 (1361)
Q Consensus 792 ~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~-----~els~a~~~sL~~lL~~~~~~~~~~-------~~~~~~~~ 859 (1361)
++|.+++..+.+.+.|..+|..+|+++++++..+. ..+..++.+.+++++..|...+-+. ...|+..|
T Consensus 1271 k~~L~~lq~ls~~~~f~~Lwl~~ld~m~~l~~~~~~e~~~~~l~e~~pe~l~~~~~~m~~~ei~~~~~~~~~~~~w~~tw 1350 (1386)
T KOG0928|consen 1271 KVFLQELQDLSSLSMFSTLWLGVLDRMEKLMRGKTSEETSDKLNEIVPELLKNMLLVMKLQEIILDKDEIGKDSLWEITW 1350 (1386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhhhhhhhhhhhhhhhccccccCcccccccchHHHHH
Confidence 99999999999989999999999999999997543 6689999999999999998665432 23677666
Q ss_pred HHHH
Q 000670 860 DVYE 863 (1361)
Q Consensus 860 ~~w~ 863 (1361)
.--.
T Consensus 1351 ~~~~ 1354 (1386)
T KOG0928|consen 1351 ERLN 1354 (1386)
T ss_pred HHHH
Confidence 5443
No 5
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.51 E-value=1.7e-14 Score=134.93 Aligned_cols=78 Identities=26% Similarity=0.480 Sum_probs=74.1
Q ss_pred hhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 000670 503 GDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 580 (1361)
Q Consensus 503 ~~~~~lq~~ll~pl~~L~~~~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI 580 (1361)
..++.||+.+|+||+.++.++++.|||+++|+|+.++++++|++|++||++||++|+.++.+.++++++.||+++++|
T Consensus 9 l~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 9 LSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred ccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 446789999999999999999999999999999999999999999999999999999999988999999999999976
No 6
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.7e-10 Score=136.69 Aligned_cols=437 Identities=16% Similarity=0.211 Sum_probs=270.7
Q ss_pred HHHHHHhHhhh-ccCCChHHHHHHHHHHHHhhHHhhcCCCCC------CCCC---CCCCCCCeeeeHHHHHHHH---Hhh
Q 000670 371 LSSLNSQLFES-SALMHISAVKSLLSALHQLSHQCMIGTSSS------FGPT---SSQKIGSISFSVERMISIL---VNN 437 (1361)
Q Consensus 371 l~~i~~~LFes-S~~L~~~a~~~fv~ALc~lS~e~l~~~~~~------~~~~---~~~~~~~~~F~L~kL~eva---~~N 437 (1361)
+.+-.+|+|+. +..|.--|+..|.-++.+.|...+..+-.. ..|+ +.++ ......|.|+.+.. +..
T Consensus 846 LiakaDRffedacdeLcLmALgdfcvaiikaSenqlFhsvTaqkdihLaaPgevkstqd-rksalhLfRigdaiirilrh 924 (1777)
T KOG1846|consen 846 LIAKADRFFEDACDELCLMALGDFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQD-RKSALHLFRIGDAIIRILRH 924 (1777)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHHHHhhhcceeeeeccceeeEeecCcccccchh-hHHHHHHHHHHHHHHHHHHh
Confidence 44445899996 568999999999999999998765442110 0111 1111 11134566777732 222
Q ss_pred ccc----chhhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHH
Q 000670 438 LHR----VEPLWDQVVGHFLEL-ADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAV 512 (1361)
Q Consensus 438 ~~R----~~~iW~~l~~hli~v-~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~l 512 (1361)
..| ...+|+.+..||+++ +||....+...|+.++.+++.+.|.. +.+.++++ |...+
T Consensus 925 kaRPLlHqMfcwpLVaaHfVeasaCdkErhvSqiAaSaiadilTelLtd-----wnEpPgfh-------------FNeaL 986 (1777)
T KOG1846|consen 925 KARPLLHQMFCWPLVAAHFVEASACDKERHVSQIAASAIADILTELLTD-----WNEPPGFH-------------FNEAL 986 (1777)
T ss_pred cccchhHHHHHHhhhhHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHhc-----cCCCCCcc-------------hhHhh
Confidence 235 367899999999999 78888888899999999988887732 44555543 44466
Q ss_pred hccHHHHhcc-CCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchh----H---------HHHHHHHHH
Q 000670 513 ISPLRVLYFS-TQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKD----L---------ITLGFQSLR 578 (1361)
Q Consensus 513 l~pl~~L~~~-~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~----l---------v~~aF~~Lq 578 (1361)
+.||+..+.. +++.|++++.+..+.++++.+.+.|.+||+.+|+-|.+|...+..+ + -.-+|++++
T Consensus 987 fgPFeramclElCdEdtkdQflsSigeLVescadkIgSGWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfe 1066 (1777)
T KOG1846|consen 987 FGPFERAMCLELCDEDTKDQFLSSIGELVESCADKIGSGWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFE 1066 (1777)
T ss_pred hchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHH
Confidence 7788876554 6888999999999999999999999999999999999997532111 1 124677666
Q ss_pred HHHh-ccCCCCChhhHHHHHHHHHHHHhcCC-----------------CcchhHHHHHHHHHHHHHHHcccC--CCchhh
Q 000670 579 FIMN-DGLSSIPTDCIHECVDVTGAYSSQKT-----------------ELNISLTAVGLLWTTTDFIAKGLV--HGISEE 638 (1361)
Q Consensus 579 lI~~-dfL~~Lp~~~~~~lI~tL~~F~~q~~-----------------dlNISLtAi~llW~isD~L~~~~~--~~~~~~ 638 (1361)
-..+ |..+.+ .+....||-|+.+|.+.-. ..+++|.|+.++.+|+..+..-.. +++.
T Consensus 1067 afLniDnipVf-anaalecimClmkflkgleevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPi-- 1143 (1777)
T KOG1846|consen 1067 AFLNIDNIPVF-ANAALECIMCLMKFLKGLEEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPI-- 1143 (1777)
T ss_pred HHhccCchHhH-HHHHHHHHHHHHHHHhcccccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchh--
Confidence 3332 322222 3678899999999998654 245789999999999988875421 1100
Q ss_pred hhhh-hcccCCC---ccccCcchhhhhhccccccccCCCCcchhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 000670 639 KEAA-NQDLCSV---PKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGS 714 (1361)
Q Consensus 639 k~~~-~~~~~s~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~s 714 (1361)
-..+ -.+.... ...++..-.|..-..++-. .........-++|+.++..+.....+.-|.-+.--+..+|+.|..
T Consensus 1144 fhlghladLprkcldqsamdeDgIEsphgpfpvl-edfdddiagiElfiiflEQicaallncppnhQknlLDlifeLLrD 1222 (1777)
T KOG1846|consen 1144 FHLGHLADLPRKCLDQSAMDEDGIESPHGPFPVL-EDFDDDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRD 1222 (1777)
T ss_pred hhhhhhhcchHHHHhhhhcccCCccCCCCCcccc-ccccccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHH
Confidence 0000 0000000 0000000001100000000 000011223479999999988866666677777888899998864
Q ss_pred cc-CCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCCCCCccchhhcccccchhhhhHHH---HHHHHHHHH
Q 000670 715 HG-QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDE---TLVLVLGGI 790 (1361)
Q Consensus 715 ~g-~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~ihhsr~~~~k~W~E---T~vlaL~gl 790 (1361)
-. .-|.+.+=-.|.-.+|+|.+.....-. +.+..-|+- -...+++.-
T Consensus 1223 iskkPlGadfGgvamsaliLPvmqkWiRRl-----------------------------dkdesywdmakaifKhaIGac 1273 (1777)
T KOG1846|consen 1223 ISKKPLGADFGGVAMSALILPVMQKWIRRL-----------------------------DKDESYWDMAKAIFKHAIGAC 1273 (1777)
T ss_pred hccCCCCCCCccchhhHHHHHHHHHHHHHh-----------------------------chhhhhHHHHHHHHHHHHhHH
Confidence 22 223333334788889999998775321 112245662 345677777
Q ss_pred HHHHHhhhcccccccchH--------HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHH
Q 000670 791 ARLLRSFFPFLANLSNFW--------TGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVY 862 (1361)
Q Consensus 791 ~~lf~~~~~~L~~~~~F~--------~~W~~lL~~l~~~~~~~~~els~a~~~sL~~lL~~~~~~~~~~~~~~~~~~~~w 862 (1361)
+.+...+...... +++. .+-...+.+...|....-..+..++.+|.+-+|...++++ +++.|+.+..+.
T Consensus 1274 celVidhielekh-SswddRlerdIcalikdcfefdkaCaaaPaefiliagcsciryvlvtagpkF--seemWniaccaL 1350 (1777)
T KOG1846|consen 1274 CELVIDHIELEKH-SSWDDRLERDICALIKDCFEFDKACAAAPAEFILIAGCSCIRYVLVTAGPKF--SEEMWNIACCAL 1350 (1777)
T ss_pred HHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHhhcchheeeeeccCccc--cHHHHHHHHHHH
Confidence 7777777764432 2222 2233344444455555556677788888887776656555 578887665444
No 7
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.34 E-value=2.4e-12 Score=137.03 Aligned_cols=76 Identities=34% Similarity=0.534 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-hhcCCC-cchHHHHHHHHHhhhccChHHHHHHHHhccCCCCCcchH
Q 000670 21 RLVLRSVAHIIRLYSSSLITECEVFLSMLVK-VTFLDL-PLWHRILVLEILRGFCVEARTLRLLFQNFDMNPKNTNVV 96 (1361)
Q Consensus 21 ~~~~Ri~~~ll~~~~~~L~~E~Ei~LslLi~-~ld~d~-p~W~RvL~LEv~r~l~~d~~llr~i~~~YD~~~~~k~I~ 96 (1361)
.+.+|++++|+++|.+.|+.|+|+|++.+++ +++++. |.|||+++||+++++|+||+++..||.+||++.+++|||
T Consensus 91 ~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYDCd~~~~nif 168 (168)
T PF12783_consen 91 SRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVNYDCDLNSKNIF 168 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHcCCCCCCCCCC
Confidence 4699999999999999999999999999999 788887 679999999999999999999999999999999999997
No 8
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.2e-07 Score=121.06 Aligned_cols=562 Identities=16% Similarity=0.113 Sum_probs=288.0
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCcchHHHHHHHHHhhhccChHHHHHHHHhc
Q 000670 8 VENEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT-FLDLPLWHRILVLEILRGFCVEARTLRLLFQNF 86 (1361)
Q Consensus 8 ~~~~~~~~~p~F~~~~~Ri~~~ll~~~~~~L~~E~Ei~LslLi~~l-d~d~p~W~RvL~LEv~r~l~~d~~llr~i~~~Y 86 (1361)
+++.+..--|+|-|.++|.+.++.+-+.+....+||+++..+--++ ......|++.+..+++..++.++.++-.+|..|
T Consensus 270 a~ll~~~~~Py~~Rl~~~sv~~i~~l~~~ea~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~ 349 (1610)
T KOG1848|consen 270 AELLALNVVPYAERLLLRSVDLIQKLACHEAVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLS 349 (1610)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecc
Confidence 3556666678888778999999999999988888888776555543 233466999999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHHHHhhhccccchhhhhhhccccccccccceEeee---ccccccccccccchhhhHHHHHHHH
Q 000670 87 DMNPKNTNVVEGMVKALARVVSSVQFQETSEESLSAVAGMFSSKAKGIEWIL---DNDASNAAVLVASEAHSITLAIEGL 163 (1361)
Q Consensus 87 D~~~~~k~I~~~l~~~l~~~~~~~~~~~~~~~s~~~~~g~~~sk~~gi~~sl---~~d~~~~~~~~~~~~~~i~~~~e~L 163 (1361)
+.-+.++.++.-+-......--. .. -..... .+-+..|+.-+.|-- +-++..+.++++..+|.+...+.+|
T Consensus 350 i~v~~~v~la~~lk~~s~~~~~~----p~-~l~~~~-~~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy~~l 423 (1610)
T KOG1848|consen 350 IGVPVAVFLASLLKFDSMDLELW----PR-FLDFLF-LKSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVYKEL 423 (1610)
T ss_pred cCcchhhhHHHHhhhhhcCcccC----cc-HhHHHh-hccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHHHHH
Confidence 99988776554433322111100 00 001111 222223333222211 1112224445555555555566556
Q ss_pred HHHHH-HHhccccc-ccccCCCCCCCCC--CCCCCCcccc-------hhHHHHHHHHHhhHHHHHHHHhhhhccCCHHHH
Q 000670 164 LGVVF-TVATLTDE-AVDVGELESPRCD--YDPLPKCMGE-------TAVLCISMVDSLWLTILDALSLILSRSQGEAII 232 (1361)
Q Consensus 164 ~~~i~-~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~m~~~~W~~lLaalS~~L~~s~De~~~ 232 (1361)
++-++ .+.+...+ ..+.|..+-...+ .+-..+..+. ....-+..+..-|-...-+.| ++
T Consensus 424 v~ti~nsi~e~l~k~s~esg~~eFt~k~k~Ie~~~dnds~stavl~~l~~~~~~li~e~~~ss~~avS----------t~ 493 (1610)
T KOG1848|consen 424 VGTISNSIQEMLNKSSIESGGSEFTSKEKGIELREDNDSMSTAVLLQLSFSNKVLIPEGLYSSRMAVS----------TL 493 (1610)
T ss_pred HHhhhHHHHHHHHHhHHhhcCccchhhhcCceeeccCchHHHHHHHHHHhhhhhhccccchhhhHHHH----------HH
Confidence 54333 22222111 1112211100000 0000111111 011112233333433333344 45
Q ss_pred HHHHHHHHHHHHHHhhc----------CCchhHHHHHHHHHHHhcCC------CCCcccc-c-ccc-------cCCCCCc
Q 000670 233 LEILKGYQAFTQACGVL----------HAVEPLNSFLASLCKFTINI------PNESDRR-S-AVL-------QSPGSKR 287 (1361)
Q Consensus 233 ~~lL~gfq~~a~vag~L----------~L~~~rDafl~sL~k~t~~~------~~~~~~~-~-~~~-------~~pgs~~ 287 (1361)
+....++++..+-++.+ ++..++|+-+. .+.+.++ +.+.... . .+. +.+|...
T Consensus 494 ~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~~a~~s--nq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~ 571 (1610)
T KOG1848|consen 494 LKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIFDAVLS--NQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCS 571 (1610)
T ss_pred HHHHHHHHHHhhhhhhhccCCccccceeehhHHHHHhh--ccccHHHHhhhhccccccchhhHHHHhchHHHHhcccccc
Confidence 55556666666666655 44455544111 0111110 0000000 0 000 0011110
Q ss_pred cc-cc---cc-ccCCcCCChhHHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHhHHhhcCCCCCcc--cccccccccccc
Q 000670 288 SE-SL---VD-QKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQ--EVSTASSKLARE 360 (1361)
Q Consensus 288 ~~-~~---~~-~~~~~~l~~Kni~~lraLlnla~~lG~~L~~SW~~IL~tlq~ld~~~~~p~~~~~--~~~~~~p~~~~~ 360 (1361)
+. .. +. -.....+.+|-+.-+|+|...+...|...+++|++-|+||+|+++++++|.+..- ..+...+.+++
T Consensus 572 Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~- 650 (1610)
T KOG1848|consen 572 ADEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTN- 650 (1610)
T ss_pred chhHHHHHHHhhCCcccCCccHHHHHhhccccCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCcccccc-
Confidence 00 00 00 0134568999999999999999999999999999999999999999987654211 01112233333
Q ss_pred ccCccchhhHHHHHHHhHhhhccCCChHHHHHHHHHHHHhhHH-hh--cCCC----CCCCCCCCCC-CCC-----eeeeH
Q 000670 361 SSGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQ-CM--IGTS----SSFGPTSSQK-IGS-----ISFSV 427 (1361)
Q Consensus 361 ~~~~~~dl~il~~i~~~LFesS~~L~~~a~~~fv~ALc~lS~e-~l--~~~~----~~~~~~~~~~-~~~-----~~F~L 427 (1361)
+|+....+....+|+....|.++-+.-+.... .++.- .| .+.. +..+.++.+. ..+ ..+.+
T Consensus 651 -----snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~-~ls~~~~m~p~qt~l~v~t~~~~hp~~p~~~~~~~ynd~~~l 724 (1610)
T KOG1848|consen 651 -----SNVQASRSFSTLMDYELVSYKNSWSLLMYTTS-SLSQPAYMEPLQTLLAVITSSSVHPIQPLTAPRQSYNDDLLL 724 (1610)
T ss_pred -----chHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HhcchhhcCHHHhhHHHHhcCCCCCCCcchhhHHHHHHHHHH
Confidence 37776777777889999999988765544432 22211 11 1100 0111122111 011 13567
Q ss_pred HHHHHHHHhhcc-c-----chhhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHH---HHHHhcchhccccccccCCCc
Q 000670 428 ERMISILVNNLH-R-----VEPLWDQVVGHFLELADN---SNQHLRNIALDALDQS---ICAVLGSEKFQDSASRQRGTS 495 (1361)
Q Consensus 428 ~kL~eva~~N~~-R-----~~~iW~~l~~hli~v~~~---~n~~lr~~Avd~L~~l---i~~~l~~~~f~~~~~~~~~~~ 495 (1361)
.++.+-+..|.. | ...+|..+.-+....+.. .+..+|.+-....... +.+.++.. |
T Consensus 725 ssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~sslr~~~~~l~v~~~~~~l~e~snq-~----------- 792 (1610)
T KOG1848|consen 725 SSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSCSSLRFLDSKLDVSGWSLILKELSNQ-F----------- 792 (1610)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhHHHHHHHHhhhH-H-----------
Confidence 777776655443 2 478899888777666544 3555655543333322 22222110 0
Q ss_pred hhhhhhhhhhhHHHHHHhccHH--------------HHhccCCc--HHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHH
Q 000670 496 DEVESRHGDLRSIECAVISPLR--------------VLYFSTQS--TDVRAGTLKILLHVLERCGEKLHYSWPSILELLR 559 (1361)
Q Consensus 496 ~~~~~~~~~~~~lq~~ll~pl~--------------~L~~~~~~--~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~ 559 (1361)
.....-.+++...+..+.... +.+..+.+ .++-.+..-.+..+...+++...+.|+.+++||+
T Consensus 793 -~~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~sile 871 (1610)
T KOG1848|consen 793 -KIINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILE 871 (1610)
T ss_pred -HHHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHh
Confidence 000011123333333332222 01111111 2555566677888888889998999999999999
Q ss_pred HhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHH-HHHHHHc
Q 000670 560 SVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWT-TTDFIAK 629 (1361)
Q Consensus 560 ~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL~~F~~q~~dlNISLtAi~llW~-isD~L~~ 629 (1361)
+++. -++ +. .....+.++.+..|+.++ +.||.--+-.-|.. ++|||+.
T Consensus 872 t~ge----~ll---------------~~--w~sV~eml~s~~d~~~ek-ek~ivrlgf~~lrlIssDfLqS 920 (1610)
T KOG1848|consen 872 TVGE----HLL---------------HG--WQSVFEMLRSATDFGSEK-EKKIVRLGFSCLRLISSDFLQS 920 (1610)
T ss_pred ccch----hhc---------------cc--cHHHHHHHHHHhhccchh-hhhHHHhhhhhhhhhhhcchhc
Confidence 8864 121 11 122333444556666655 44444334444443 4578775
No 9
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=98.89 E-value=1.5e-08 Score=130.96 Aligned_cols=509 Identities=17% Similarity=0.154 Sum_probs=332.2
Q ss_pred HHHHHHHhhHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhcCCCCC-cccccccccC
Q 000670 204 CISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNE-SDRRSAVLQS 282 (1361)
Q Consensus 204 ~~~m~~~~W~~lLaalS~~L~~s~De~~~~~lL~gfq~~a~vag~L~L~~~rDafl~sL~k~t~~~~~~-~~~~~~~~~~ 282 (1361)
-+.+|+..|+.+++++...+....++-+....+.+.+++..+|..+.+..|||+|+.++++++.++... ++... ...
T Consensus 491 ~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~ia~~f~~n~p~~~~~~~~s~~t~l~~~S~~~~~~--~~~ 568 (1024)
T COG5307 491 DATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTRIAANFDFNDPRDAFLESLSEFTTLINSSVSEGPY--LFI 568 (1024)
T ss_pred hHhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccchhhcceecchhHHHHHHhhccCCccccCcccccc--ccC
Confidence 346777777777777777777777777777788889999999999999999999999999999875322 00000 000
Q ss_pred CCCCc--ccccccccCCcCCChhHHHHHHHHHHHHHhhcC--cc-cCCHHHHHHHHHHhHHhhcCCCCCccccccccccc
Q 000670 283 PGSKR--SESLVDQKDNIVLTPKNVQALRTLFNIAHRLHN--VL-GPSWVLVLETLAALDRAIHSPHATTQEVSTASSKL 357 (1361)
Q Consensus 283 pgs~~--~~~~~~~~~~~~l~~Kni~~lraLlnla~~lG~--~L-~~SW~~IL~tlq~ld~~~~~p~~~~~~~~~~~p~~ 357 (1361)
+.... ..+..+.....+-.-++..+.-.++.+....|+ .+ ...|.++-..-..+........... ..|..
T Consensus 569 ~~~d~~~~is~~~~~~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~~~~~~~~~~~l~~~~~~-----~~~~~ 643 (1024)
T COG5307 569 PSEDSLLSISVLELAARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIENKSLKLYLSSLIEDGKH-----FSPSI 643 (1024)
T ss_pred ccccccchhhHHHHHHHhcccchhhcchhHHhHHhhccccccccchhhhhhhhhhHhhhhhhhhcCCCcc-----ccccc
Confidence 00000 000000001122233778888888888777766 33 4477776555444433222111000 00111
Q ss_pred cccccCccchhhHHHHHHHhHhhhccCCCh-HHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCeeeeHHHHHHHHHh
Q 000670 358 ARESSGQYSDFNVLSSLNSQLFESSALMHI-SAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVN 436 (1361)
Q Consensus 358 ~~~~~~~~~dl~il~~i~~~LFesS~~L~~-~a~~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~ 436 (1361)
.+... ..-+....++++...+.++. .++..++++++.... + .| .+++.++++..
T Consensus 644 ~~~~~-----~~~~~~~~~~i~~~~s~~s~~~~~l~~~k~~~~~d~-----~------------~~---~~q~~v~~s~~ 698 (1024)
T COG5307 644 VKKLG-----SPELPKLNPDISSGKSKLSVWSAVLSVFKAILSSDL-----P------------SP---PLQKEVDISKK 698 (1024)
T ss_pred ccccc-----CccccccCcccccccccccccchHHHHHHHHHhccC-----C------------CC---CcHHhhhHHhh
Confidence 00000 00111223567777777777 788999999987110 0 12 78899999999
Q ss_pred hcccc---hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHh
Q 000670 437 NLHRV---EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVI 513 (1361)
Q Consensus 437 N~~R~---~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll 513 (1361)
|++++ ..+|..+....-.+..+.+..+..++.+..+++.+.+.+.+ +.....|+..++
T Consensus 699 n~~~i~~~~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~ie-------------------e~~~~~f~~~~~ 759 (1024)
T COG5307 699 NVDIIKSESKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIE-------------------ELSDFGFQIALL 759 (1024)
T ss_pred hhhhhhhhhHHHhhcccchhhccccccccchhcccchhhhhccccCChh-------------------hhcchhHHHHHh
Confidence 99984 56999999999999999999999999999999887665432 223456788888
Q ss_pred ccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhH
Q 000670 514 SPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCI 593 (1361)
Q Consensus 514 ~pl~~L~~~~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~ 593 (1361)
.|+.........+.|++..+.|..+++++....+.+| +++|+++........ ++..++.+.. .|.+ .-+.++|
T Consensus 760 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~~~---~~~~~s~~~~--~e~v-~s~~n~f 832 (1024)
T COG5307 760 LPFEYSVEVSLVVAVKELVIGCSDNLLTEAASSIASG-KTIFEISAYEDLSST---LRYILSSLSN--DELV-LSQENLF 832 (1024)
T ss_pred ccccccccccceeeeeeeehhhHHHHHHHHHHhhhcc-ccceeeeecccccch---hhhHHHHhcc--hhhh-hChhhHH
Confidence 8888776667778999999999999999999999999 999999876543111 3444443322 1222 2334777
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhccccccccCCC
Q 000670 594 HECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSI 673 (1361)
Q Consensus 594 ~~lI~tL~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~ 673 (1361)
...+-+-......+.++-+.+.++.++.........+ ...+. .. ..
T Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-k~~~~-----------------------~~----------~~ 878 (1024)
T COG5307 833 IELLSSKNEGKQNDKNLELRLHSVDYLRFLLPNVENW-KNLSS-----------------------VL----------SA 878 (1024)
T ss_pred HHHHhhhHHHHHhccchhhhhccHHHHHHHhHHHHHH-HHHHH-----------------------HH----------Hh
Confidence 7777777777777778888888887776555444432 10000 00 00
Q ss_pred CcchhhhhHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCccccc
Q 000670 674 GMVDRDKLLFAVFSLLKKLGA-DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQ 752 (1361)
Q Consensus 674 ~~~~~~~LW~~LL~~L~~L~~-D~R~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~ 752 (1361)
. ......|++.|.++.++.. -.-.++ |..+..+++.+..++|+.+.+.-++|++....-....
T Consensus 879 ~-~~~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~------- 942 (1024)
T COG5307 879 N-SNFSKDIFSYLEKYVKIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSD------- 942 (1024)
T ss_pred h-hhhhHHHHHHHHHHHHhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCccc-------
Confidence 0 1124789999999888663 344555 8899999999999999999999999988765422111
Q ss_pred ccccCCCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHH
Q 000670 753 GKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSL 831 (1361)
Q Consensus 753 ~~~~~~~~~~~~~~~ihhsr~~~~k~W~-ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~ 831 (1361)
+. ++. ++...-.|. .+.+.++...+-+|...++.+. ...| .+.+...| .+.-.++..
T Consensus 943 --~~--------~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~-----~~~~--~~~l~~~c-~~~~~~~~~ 1000 (1024)
T COG5307 943 --KT--------NLD----NDEIELVWASTDLLAALKEFIELFNSIFEKLE-----ILAG--KLILLHQC-LNNCDQLGL 1000 (1024)
T ss_pred --cc--------ccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH--HHHHHHhh-cCcHhhhhh
Confidence 00 011 234456787 7788899999999999998764 1234 44445555 445577888
Q ss_pred HHHHHHHHHHh
Q 000670 832 AAINCLQTTVL 842 (1361)
Q Consensus 832 a~~~sL~~lL~ 842 (1361)
.+++++++++-
T Consensus 1001 ~~~~~~~~~~~ 1011 (1024)
T COG5307 1001 GAIETLEEILW 1011 (1024)
T ss_pred hhHHHHhhhhH
Confidence 88888887653
No 10
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.79 E-value=0.00049 Score=95.01 Aligned_cols=92 Identities=25% Similarity=0.460 Sum_probs=83.6
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHhhcCC-Cc-chHHHHHHHHHhhhccChHHHHHHHHhccCCCCC
Q 000670 16 EPYFRRLVLRSVAHIIRLYSSSLITECEVFLSML-VKVTFLD-LP-LWHRILVLEILRGFCVEARTLRLLFQNFDMNPKN 92 (1361)
Q Consensus 16 ~p~F~~~~~Ri~~~ll~~~~~~L~~E~Ei~LslL-i~~ld~d-~p-~W~RvL~LEv~r~l~~d~~llr~i~~~YD~~~~~ 92 (1361)
.|-|- ..+||++.|+.+|...|+.|.|||++.+ .++++.. .+ .=||.++||++..||.||+++-.||-+|||+.+.
T Consensus 422 ~~vf~-lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~lc~dp~~lveiyvNYDCD~~~ 500 (1780)
T PLN03076 422 MIIFQ-LSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNS 500 (1780)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCccHHHHHHhccCCCCCC
Confidence 34477 4899999999999999999999999985 6688764 34 6999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHh
Q 000670 93 TNVVEGMVKALARVVS 108 (1361)
Q Consensus 93 k~I~~~l~~~l~~~~~ 108 (1361)
.|||+++++.|.+.++
T Consensus 501 ~NifE~lv~~Lsk~a~ 516 (1780)
T PLN03076 501 SNIFERMVNGLLKTAQ 516 (1780)
T ss_pred chHHHHHHHHHHHHhc
Confidence 9999999999999887
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.01 E-value=32 Score=43.32 Aligned_cols=145 Identities=15% Similarity=0.184 Sum_probs=99.8
Q ss_pred eeeHHHHHHHHHhhccc-chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhh
Q 000670 424 SFSVERMISILVNNLHR-VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRH 502 (1361)
Q Consensus 424 ~F~L~kL~eva~~N~~R-~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~ 502 (1361)
.+.+.|++-++...+.. .....-.+++++.+=..|+|+.+|..|..+|..+....+
T Consensus 55 ~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~----------------------- 111 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEM----------------------- 111 (526)
T ss_dssp SHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHH-----------------------
T ss_pred CHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccch-----------------------
Confidence 57888898887776664 567899999999999999999999999999988653211
Q ss_pred hhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHH-H
Q 000670 503 GDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI-M 581 (1361)
Q Consensus 503 ~~~~~lq~~ll~pl~~L~~~~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI-~ 581 (1361)
.+ .+..++..+. ..+++.||+..+-|+.++.+.+.+.+..+| +..|.....+.+...+..|...+.-| +
T Consensus 112 -----~~-~l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 181 (526)
T PF01602_consen 112 -----AE-PLIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEIKC 181 (526)
T ss_dssp -----HH-HHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHHHC
T ss_pred -----hh-HHHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHHcc
Confidence 11 2333444443 356789999999999999999888776554 44554444556667778888888777 3
Q ss_pred hccCCCCChhhHHHHHHHHHHHH
Q 000670 582 NDGLSSIPTDCIHECVDVTGAYS 604 (1361)
Q Consensus 582 ~dfL~~Lp~~~~~~lI~tL~~F~ 604 (1361)
++.... +.+..++..|.+..
T Consensus 182 ~~~~~~---~~~~~~~~~L~~~l 201 (526)
T PF01602_consen 182 NDDSYK---SLIPKLIRILCQLL 201 (526)
T ss_dssp THHHHT---THHHHHHHHHHHHH
T ss_pred Ccchhh---hhHHHHHHHhhhcc
Confidence 222100 23445555555444
No 12
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.05 E-value=0.16 Score=68.59 Aligned_cols=94 Identities=22% Similarity=0.408 Sum_probs=79.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh-cCCC-cchHHHHHHHHHhhhccChHHHHHHHHhccCCCCC
Q 000670 15 GEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT-FLDL-PLWHRILVLEILRGFCVEARTLRLLFQNFDMNPKN 92 (1361)
Q Consensus 15 ~~p~F~~~~~Ri~~~ll~~~~~~L~~E~Ei~LslLi~~l-d~d~-p~W~RvL~LEv~r~l~~d~~llr~i~~~YD~~~~~ 92 (1361)
-++-|- +-+=|...|+..|..-++.|.|||.+.++.-+ +... +.=|+-.++-++.++|.||..+-.||.+||+..+.
T Consensus 340 ~~~vfe-~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~s~~qk~~~l~~~~~ic~d~q~~Vdi~vnydcd~~~ 418 (1514)
T KOG0929|consen 340 VPMVFE-LSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTSSFQQKMMVLRILTRICADPQTLVDIYVNYDCDSNS 418 (1514)
T ss_pred chHHHH-HHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCCcccchhHHHHHHhhhcCCCccccccccCCccccCC
Confidence 334454 24458899999999999999999999998854 4322 45677778888999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhh
Q 000670 93 TNVVEGMVKALARVVSS 109 (1361)
Q Consensus 93 k~I~~~l~~~l~~~~~~ 109 (1361)
.|||+.+++.+.+.++.
T Consensus 419 ~nifer~v~~ltk~a~g 435 (1514)
T KOG0929|consen 419 QNIFERLVNGLSKIAQG 435 (1514)
T ss_pred ccHHHHHHhhHHHhhcC
Confidence 99999999999998875
No 13
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.74 E-value=1.9e+02 Score=37.75 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 000670 572 LGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLL 620 (1361)
Q Consensus 572 ~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL~~F~~q~~dlNISLtAi~ll 620 (1361)
+=|+|++-|++=... ..-...-|++|++|..++ |-||-.-|+..|
T Consensus 293 ILYE~V~TI~~I~~~---~~LrvlainiLgkFL~n~-d~NirYvaLn~L 337 (866)
T KOG1062|consen 293 ILYECVRTIMDIRSN---SGLRVLAINILGKFLLNR-DNNIRYVALNML 337 (866)
T ss_pred HHHHHHHHHHhccCC---chHHHHHHHHHHHHhcCC-ccceeeeehhhH
Confidence 458888888752211 233567899999999987 888876666554
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=80.66 E-value=1.7e+02 Score=36.91 Aligned_cols=255 Identities=16% Similarity=0.167 Sum_probs=148.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhccCCc
Q 000670 446 DQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQS 525 (1361)
Q Consensus 446 ~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~ 525 (1361)
..+.+.+.....+.+..++..|+..+..+.. .+ ..++ .+..++..+.. +.+
T Consensus 230 ~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~------------------~~---------~~~~-~~~~~L~~lL~-s~~ 280 (526)
T PF01602_consen 230 NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP------------------SP---------ELLQ-KAINPLIKLLS-SSD 280 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------------------SH---------HHHH-HHHHHHHHHHT-SSS
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhhc------------------ch---------HHHH-hhHHHHHHHhh-ccc
Confidence 4677777777777788888888888774311 00 0222 34566777755 678
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHh
Q 000670 526 TDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSS 605 (1361)
Q Consensus 526 ~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL~~F~~ 605 (1361)
.++|-.+|++|.++...+...+. ....++..+. .+.+..+...+.+.+..+++ .+++..+++.|.+|++
T Consensus 281 ~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~---~~~d~~Ir~~~l~lL~~l~~-------~~n~~~Il~eL~~~l~ 349 (526)
T PF01602_consen 281 PNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL---YDDDPSIRKKALDLLYKLAN-------ESNVKEILDELLKYLS 349 (526)
T ss_dssp HHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH---CSSSHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred chhehhHHHHHHHhhcccchhhh-hhhhhhheec---CCCChhHHHHHHHHHhhccc-------ccchhhHHHHHHHHHH
Confidence 89999999999999988755555 4444443333 23456688889998888875 4678899999999995
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhccccccccCCCCcchhhhhHHHH
Q 000670 606 QKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAV 685 (1361)
Q Consensus 606 q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~L 685 (1361)
...|..+.-.++.-+-.++..... +.-| .
T Consensus 350 ~~~d~~~~~~~i~~I~~la~~~~~-------------------------------------------------~~~~--~ 378 (526)
T PF01602_consen 350 ELSDPDFRRELIKAIGDLAEKFPP-------------------------------------------------DAEW--Y 378 (526)
T ss_dssp HC--HHHHHHHHHHHHHHHHHHGS-------------------------------------------------SHHH--H
T ss_pred hccchhhhhhHHHHHHHHHhccCc-------------------------------------------------hHHH--H
Confidence 443444443444333222221110 1123 2
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCCCCCccch
Q 000670 686 FSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVH 765 (1361)
Q Consensus 686 L~~L~~L~~D~R~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~~~~~~~~~~~~~~ 765 (1361)
+..+.++.......|++.+++.+.+++..+... .. .++..+++.+...
T Consensus 379 v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~-~~--------~~l~~L~~~l~~~----------------------- 426 (526)
T PF01602_consen 379 VDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL-RE--------KILKKLIELLEDI----------------------- 426 (526)
T ss_dssp HHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT-HH--------HHHHHHHHHHTSS-----------------------
T ss_pred HHHHHHhhhhccccccchHHHHHHHHhhcChhh-hH--------HHHHHHHHHHHHh-----------------------
Confidence 244444444455666777777777777654322 11 1133333333210
Q ss_pred hhcccccchhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhh
Q 000670 766 MLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLS 843 (1361)
Q Consensus 766 ~~ihhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~a~~~sL~~lL~~ 843 (1361)
.++ + ++..++-++..|-+..... .....++..+.+.+...+.++-..++.++.++...
T Consensus 427 ------~~~------~----~~~~~~wilGEy~~~~~~~----~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 427 ------SSP------E----ALAAAIWILGEYGELIENT----ESAPDILRSLIENFIEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp ------SSH------H----HHHHHHHHHHHHCHHHTTT----THHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred ------hHH------H----HHHHHHhhhcccCCccccc----ccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhh
Confidence 000 1 3455566666666544331 13456777777777777777888888888777654
No 15
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=78.89 E-value=96 Score=34.40 Aligned_cols=176 Identities=14% Similarity=0.179 Sum_probs=101.9
Q ss_pred eHHHHHHHHHhh--cccchhhHHHHH---HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhh
Q 000670 426 SVERMISILVNN--LHRVEPLWDQVV---GHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVES 500 (1361)
Q Consensus 426 ~L~kL~eva~~N--~~R~~~iW~~l~---~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~ 500 (1361)
.+++|..++..| .+....+++.+. .-+.....+.+..+...|...+..++... +.
T Consensus 27 al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l-~~------------------- 86 (228)
T PF12348_consen 27 ALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL-GS------------------- 86 (228)
T ss_dssp HHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH-GG-------------------
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hH-------------------
Confidence 566677777666 223466666666 33334444456788888999888887632 11
Q ss_pred hhhhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 000670 501 RHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 580 (1361)
Q Consensus 501 ~~~~~~~lq~~ll~pl~~L~~~~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI 580 (1361)
.+..+-..++.++.... .....-|++..-+||..|++.++ .+=+.++.++......+++.+-..+.+.+..+
T Consensus 87 ---~~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 87 ---HFEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp ---GGHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 01122113444444442 34456899999999999999876 11155588888877766766667788888888
Q ss_pred HhccC---CCCCh-hhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcc
Q 000670 581 MNDGL---SSIPT-DCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKG 630 (1361)
Q Consensus 581 ~~dfL---~~Lp~-~~~~~lI~tL~~F~~q~~dlNISLtAi~llW~isD~L~~~ 630 (1361)
+..+- ..+.. ..+..++.++.++..-. +..+--.|-..||.+......+
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHh
Confidence 87665 22322 23577888888887643 6677777889999887776643
No 16
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=76.03 E-value=80 Score=39.50 Aligned_cols=139 Identities=14% Similarity=0.183 Sum_probs=78.5
Q ss_pred ccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCeeeeHHHHHHHHHhhcccchhhHHHHHHHHHHHhc--CC
Q 000670 382 SALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELAD--NS 459 (1361)
Q Consensus 382 S~~L~~~a~~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~N~~R~~~iW~~l~~hli~v~~--~~ 459 (1361)
-..+|++++..+|..||..-... .+.+-.==++.|+-+ ...+......+..+.. ++
T Consensus 207 y~~iP~~sl~~~i~vLCsi~~~~---------------------~l~~~~w~~m~nL~~-S~~g~~~i~~L~~iL~~~~~ 264 (464)
T PF11864_consen 207 YGDIPSESLSPCIEVLCSIVNSV---------------------SLCKPSWRTMRNLLK-SHLGHSAIRTLCDILRSPDP 264 (464)
T ss_pred cCcCChHHHHHHHHHHhhHhccc---------------------ccchhHHHHHHHHHc-CccHHHHHHHHHHHHcccCc
Confidence 57999999999999999762111 001111114555555 3344556666667662 22
Q ss_pred ----CHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhccCCcHHHHHHHHHH
Q 000670 460 ----NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKI 535 (1361)
Q Consensus 460 ----n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~eIr~~iL~~ 535 (1361)
+.++--=|+..|+.++.+. +.+++. ....... .++..|...+. ..+.-|--.|+..
T Consensus 265 ~~~~~~~~lRGAv~~l~~ll~~~-~~~~~~-----------------~l~~~~~-~vl~sl~~al~-~~~~~v~~eIl~~ 324 (464)
T PF11864_consen 265 QNKRDINVLRGAVFFLRMLLWGS-GEQGYP-----------------SLPFSPS-SVLPSLLNALK-SNSPRVDYEILLL 324 (464)
T ss_pred cccccHHHHhhHHHHHHHHHhcc-ccCCcc-----------------eecccHH-HHHHHHHHHHh-CCCCeehHHHHHH
Confidence 3444446888888766532 101100 0001111 12333333322 2333455677888
Q ss_pred HHHHH-HhcCCCc-cCChHHHHHHHHHhh
Q 000670 536 LLHVL-ERCGEKL-HYSWPSILELLRSVA 562 (1361)
Q Consensus 536 L~~iL-~~~g~~L-~sgW~~If~IL~~v~ 562 (1361)
+..++ .+++..+ ...|..+++|+..+.
T Consensus 325 i~~ll~~~~~~~l~~~~W~~~~~i~~~~~ 353 (464)
T PF11864_consen 325 INRLLDGKYGRELSEEDWDIILDIIEEIF 353 (464)
T ss_pred HHHHHhHhhhhhhcccCchHHHHHHHHHH
Confidence 88899 8888876 579999999998753
No 17
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=74.93 E-value=5.5 Score=29.78 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=22.0
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 000670 686 FSLLKKLGADERPEVRNSAIRTLFQTLG 713 (1361)
Q Consensus 686 L~~L~~L~~D~R~EVRn~AiqTLfril~ 713 (1361)
+-.+.++..|+-++||..|+++|-++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3445677889999999999999987764
No 18
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=68.90 E-value=74 Score=36.62 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcc-CChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHH
Q 000670 526 TDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAY 603 (1361)
Q Consensus 526 ~eIr~~iL~~L~~iL~~~g~~L~-sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL~~F 603 (1361)
...|..+++.+..+++++.+.++ .|=.-|..++..+.+++++..+-.+|+.++.|+..|- + .+...++.|++..|
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~-~~~~e~lFd~~~cY 171 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I-SEFAEDLFDVFSCY 171 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c-chhHHHHHHHhhhe
Confidence 37799999999999999887774 4667777999998888899999999999999998775 2 34455555555544
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.55 E-value=4.6e+02 Score=35.88 Aligned_cols=162 Identities=12% Similarity=0.207 Sum_probs=96.1
Q ss_pred HhhcccchhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHh
Q 000670 435 VNNLHRVEPLWDQVVGHFLELADN-SNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVI 513 (1361)
Q Consensus 435 ~~N~~R~~~iW~~l~~hli~v~~~-~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll 513 (1361)
+.|..|-.. +..-|..+..+ .++.+|..|+.-+|+++.+.-.+ .+ . .-|..++
T Consensus 28 l~~~~~~~~----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~--------l~----~----------e~~~sik 81 (1075)
T KOG2171|consen 28 LETLAKTEP----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSR--------LS----A----------EVQQSIK 81 (1075)
T ss_pred HHHhhcccc----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhc--------CC----H----------HHHHHHH
Confidence 444445444 44445555554 48999999999999998874321 11 0 1111233
Q ss_pred ccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhH
Q 000670 514 SPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCI 593 (1361)
Q Consensus 514 ~pl~~L~~~~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~ 593 (1361)
+.+.......+..-||..+-+.+.+|-.+-..- +|+-++..|-......+..+=..||-+|.-+...|=..+. ..+
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~-~~~ 157 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ-PHL 157 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc-hhH
Confidence 333344455667788888888888886654443 8999998887666666777888899888777655543332 123
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Q 000670 594 HECVDVTGAYSSQKTELNISLTAVGLLWTTTDFI 627 (1361)
Q Consensus 594 ~~lI~tL~~F~~q~~dlNISLtAi~llW~isD~L 627 (1361)
.++...+.+-. ++...+|-.+|+.-+-.+..++
T Consensus 158 ~~l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~~~ 190 (1075)
T KOG2171|consen 158 DDLLRLFSQTM-TDPSSPVRVAAVRALGAFAEYL 190 (1075)
T ss_pred HHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHh
Confidence 33333333322 3334447666665554444444
No 20
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=65.58 E-value=3.4e+02 Score=33.70 Aligned_cols=277 Identities=13% Similarity=0.117 Sum_probs=138.8
Q ss_pred hhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHh
Q 000670 442 EPLWDQVVGHFLELADNS-NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 520 (1361)
Q Consensus 442 ~~iW~~l~~hli~v~~~~-n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 520 (1361)
..+=+.++.-+..++.+| |+..--|--+++.-++....+. +......||..++-||..+.
T Consensus 66 ~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~-------------------~~~~v~~~E~~L~P~f~~IL 126 (435)
T PF03378_consen 66 VEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA-------------------DPEAVSQFEEALFPPFQEIL 126 (435)
T ss_dssp HHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG-------------------GHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC-------------------ChhHHHHHHHHHHHHHHHHH
Confidence 445566777777788887 8999999888888877633211 01223467877877777765
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcC-CCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHH
Q 000670 521 FSTQSTDVRAGTLKILLHVLERCG-EKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDV 599 (1361)
Q Consensus 521 ~~~~~~eIr~~iL~~L~~iL~~~g-~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~t 599 (1361)
... -.|.---+++-|..+++.+. ..+......+|..|-+..- =.- ..+++.++..
T Consensus 127 q~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~l----------------------We~-~gniPalvrL 182 (435)
T PF03378_consen 127 QQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPAL----------------------WER-RGNIPALVRL 182 (435)
T ss_dssp HTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGG----------------------GGS-TTTHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcch----------------------hcc-CCCcCcHHHH
Confidence 432 12555666777778888776 5554455555544433321 011 1356677777
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhccccccccCCCCcchhh
Q 000670 600 TGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRD 679 (1361)
Q Consensus 600 L~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 679 (1361)
|..|.+.....-.+-.-+.-++.+-..|-.... . + ..+..- -+......+. .... .-..
T Consensus 183 L~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~---~-D-~~gF~L------------L~~iv~~~p~---~~l~-~yl~ 241 (435)
T PF03378_consen 183 LQAYIKKDPSFIVANNQLEPILGVFQKLIASKA---N-D-HYGFDL------------LESIVENLPP---EALE-PYLK 241 (435)
T ss_dssp HHHHHHHHGGG----S-CHHHHHHHHHHHT-TT---C-H-HHHHHH------------HHHHHHHS-H---HHHG-GGHH
T ss_pred HHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC---c-c-hHHHHH------------HHHHHHHCCH---HHHH-HHHH
Confidence 777776543322222334444555555554211 0 0 000000 0000000000 0000 1234
Q ss_pred hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccc
Q 000670 680 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG--------QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEW 751 (1361)
Q Consensus 680 ~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~s~g--------~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~ 751 (1361)
.+|..+|.+|.+- .-....++=+..+.-....|| +...+..|..++.+++.|-++++...
T Consensus 242 ~I~~lll~RLq~s---kT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~--------- 309 (435)
T PF03378_consen 242 QIFTLLLTRLQSS---KTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP--------- 309 (435)
T ss_dssp HHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH---------
T ss_pred HHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc---------
Confidence 6888888888752 222333333333232333455 35567788888888888877665311
Q ss_pred cccccCCCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCCh
Q 000670 752 QGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS 826 (1361)
Q Consensus 752 ~~~~~~~~~~~~~~~~ihhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~ 826 (1361)
.| +.++.=|+++++..- +.+. ++..+.|..+++.+-+++....
T Consensus 310 ----------------------------~e-rKi~~vGltkLL~es-~~~~--~~~~~~w~~ll~~Ll~ll~~p~ 352 (435)
T PF03378_consen 310 ----------------------------IE-RKICAVGLTKLLCES-PAFL--SEYSQLWPPLLEALLKLLERPP 352 (435)
T ss_dssp ----------------------------HH-HHHHHHHHHHHHHSS-TTHH--HH-CHHHHHHHHHHHHHHHTTS
T ss_pred ----------------------------ch-hhHHHHHHHHHHhcc-Hhhh--hHHHHHHHHHHHHHHHHHcCCc
Confidence 12 234455777777532 1121 1145689999998888776544
No 21
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=63.82 E-value=15 Score=27.44 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000670 448 VVGHFLELADNSNQHLRNIALDALDQSIC 476 (1361)
Q Consensus 448 l~~hli~v~~~~n~~lr~~Avd~L~~li~ 476 (1361)
+..+|.+..+++++.+|..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45788899999999999999999998764
No 22
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.74 E-value=1.4e+02 Score=35.61 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhc
Q 000670 442 EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 521 (1361)
Q Consensus 442 ~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~ 521 (1361)
..+|..+.. ...|++..+|.+|++++...+.+.. ..|...+|.-++..+..+..
T Consensus 123 ~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP----------------------~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 123 LGGLVPLLG----YLENSDAELRELAARVIGTAVQNNP----------------------KSQEQVIELGALSKLLKILS 176 (342)
T ss_pred ccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCH----------------------HHHHHHHHcccHHHHHHHHc
Confidence 567988887 4578899999999999998665321 12334555556677777777
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCc-----cCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccC
Q 000670 522 STQSTDVRAGTLKILLHVLERCGEKL-----HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGL 585 (1361)
Q Consensus 522 ~~~~~eIr~~iL~~L~~iL~~~g~~L-----~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL 585 (1361)
.+...++|..+|-.+..+|.++-.-. -.||..+..++..-.. +..+.+.++.-+..+.....
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~--~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNT--SVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCc--chHHHHHHHHHHHHHHHhhh
Confidence 88888999999999999998764332 2799999999876432 44577777777776665443
No 23
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=63.38 E-value=1e+02 Score=34.14 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=68.0
Q ss_pred cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHH
Q 000670 440 RVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVL 519 (1361)
Q Consensus 440 R~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L 519 (1361)
+.+..=+.+...++..+.+++..+|..|..+|..++...- .....+. +...-
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---------------------------~~~~~~~-~~l~~ 138 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---------------------------YSPKILL-EILSQ 138 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----------------------------H--HHHH-HHHHH
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---------------------------cHHHHHH-HHHHH
Confidence 3556667888899999999999999999999998765210 0000111 11112
Q ss_pred hccCCcHHHHHHHHHHHHHHHHhcC---CCccCC--hHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 000670 520 YFSTQSTDVRAGTLKILLHVLERCG---EKLHYS--WPSILELLRSVADASEKDLITLGFQSLRFI 580 (1361)
Q Consensus 520 ~~~~~~~eIr~~iL~~L~~iL~~~g---~~L~sg--W~~If~IL~~v~~~~~~~lv~~aF~~LqlI 580 (1361)
...+.+..+|...++++..+++.++ ..+..+ .+.+...|...-.+.+.++=..|.+++..+
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 2467788999999999999999999 566544 366777776665555555444455544444
No 24
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.37 E-value=1.1e+02 Score=39.10 Aligned_cols=132 Identities=14% Similarity=0.202 Sum_probs=88.9
Q ss_pred eHHHHHHHHHhhccc--chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhh
Q 000670 426 SVERMISILVNNLHR--VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHG 503 (1361)
Q Consensus 426 ~L~kL~eva~~N~~R--~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~ 503 (1361)
+|+|+.|=.-.-+++ ..+--+.+..-|++...|+++.+|..|+.+++|.+.. .. + .
T Consensus 151 AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~--~~--------------q------a 208 (885)
T KOG2023|consen 151 ALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII--QT--------------Q------A 208 (885)
T ss_pred HHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec--Cc--------------H------H
Confidence 677777754444444 2455578889999999999999999999999997651 00 0 1
Q ss_pred hhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 000670 504 DLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIM 581 (1361)
Q Consensus 504 ~~~~lq~~ll~pl~~L~~~~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~ 581 (1361)
....+. .|+.-+-.+ .+..+.+||+++=..+-.+++-+.+.+...=+.|.+-+-...++.++++.-.|.+-.--++
T Consensus 209 l~~~iD-~Fle~lFal-anD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 209 LYVHID-KFLEILFAL-ANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHH-HHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 111222 122222233 4677889999999999999999999999888888876655555556554444444443343
No 25
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.50 E-value=1.5e+02 Score=38.11 Aligned_cols=110 Identities=14% Similarity=0.187 Sum_probs=77.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCCCCCccchhhcccccc
Q 000670 694 ADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRN 773 (1361)
Q Consensus 694 ~D~R~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~ihhsr~ 773 (1361)
.-+..+||..|...||..+---|..+..+.-+.++.+- |..+.++.+. +
T Consensus 184 ~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d------------~------------------ 232 (1005)
T KOG1949|consen 184 KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLED------------P------------------ 232 (1005)
T ss_pred ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcC------------C------------------
Confidence 34678999999999999998888888888888877654 3444444321 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHhhh
Q 000670 774 TAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSI-LNGSKEVSLAAINCLQTTVLSH 844 (1361)
Q Consensus 774 ~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~-~~~~~els~a~~~sL~~lL~~~ 844 (1361)
.-.-+..+..|++++|..|+..+-. ..-..+|.++..-+ .....+|-.++++++..++-..
T Consensus 233 -----~p~VRS~a~~gv~k~~s~fWe~iP~-----~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 233 -----YPMVRSTAILGVCKITSKFWEMIPP-----TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred -----CchHHHHHHHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc
Confidence 1134557889999999999987742 24455666655444 4445688899999998877543
No 26
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.25 E-value=3.9e+02 Score=36.64 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=70.6
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhccCCcHHHHHHHHH
Q 000670 455 LADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLK 534 (1361)
Q Consensus 455 v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~eIr~~iL~ 534 (1361)
.-++.+..++.+|-+.|..++.. -.-+.+ .+.....+++.++.++... ..-++..-+.
T Consensus 662 ~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~----------------~~q~i~~I~n~L~ds~qs~-----~~~~~~~rl~ 719 (1176)
T KOG1248|consen 662 FENSSSTKVQKKAYRLLEELSSS-PSGEGL----------------VEQRIDDIFNSLLDSFQSS-----SSPAQASRLK 719 (1176)
T ss_pred hhccccHHHHHHHHHHHHHHhcC-CchhhH----------------HHHHHHHHHHHHHHHHhcc-----chHHHHHHHH
Confidence 34555778888888888876542 000000 0112334455566665433 3467888899
Q ss_pred HHHHHHHhcC-CCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHH--hccCCCC---ChhhHHHHHHHHHHH
Q 000670 535 ILLHVLERCG-EKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIM--NDGLSSI---PTDCIHECVDVTGAY 603 (1361)
Q Consensus 535 ~L~~iL~~~g-~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~--~dfL~~L---p~~~~~~lI~tL~~F 603 (1361)
||+.|++.++ +....==+.|-++|-.. .+.+...=+.||+||..|+ .-++.-. +.+.+...|..++.=
T Consensus 720 ~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isag 793 (1176)
T KOG1248|consen 720 CLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAG 793 (1176)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhh
Confidence 9999999887 11111122333444333 4455667889999999999 4443322 133445555554443
No 27
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=56.28 E-value=6.6e+02 Score=33.93 Aligned_cols=281 Identities=15% Similarity=0.106 Sum_probs=149.1
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcc-CChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 000670 522 STQSTDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 600 (1361)
Q Consensus 522 ~~~~~eIr~~iL~~L~~iL~~~g~~L~-sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL 600 (1361)
.+.+-|+|.+...-|..=||.-.-+|. .+-+-+..+|-..-.+++.+.-..|-.|+-.+++ -++.+.+...|+.|
T Consensus 15 tssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvs----Kvke~~le~~ve~L 90 (1233)
T KOG1824|consen 15 TSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVS----KVKEDQLETIVENL 90 (1233)
T ss_pred cCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHh----hchHHHHHHHHHHH
Confidence 456778888888888888887655554 4566666666555555666788999999998884 57888999999998
Q ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHcccCC-CchhhhhhhhcccCCCccccCcc--------hhhhhhccccccccC
Q 000670 601 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVH-GISEEKEAANQDLCSVPKQMDGE--------KREEKTLSNLDDQNH 671 (1361)
Q Consensus 601 ~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~-~~~~~k~~~~~~~~s~~~~~~~~--------~~e~~~~~~~~~~~~ 671 (1361)
..=.-...+.-.-++|+++.-.++.--...... .....+.-...-...+..+.+.. ..++..+.+ +
T Consensus 91 ~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~-----g 165 (1233)
T KOG1824|consen 91 CSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF-----G 165 (1233)
T ss_pred hhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh-----c
Confidence 876444445555566777754433221100000 00000000000000000000000 001111111 0
Q ss_pred CCCcchhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccc
Q 000670 672 SIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEW 751 (1361)
Q Consensus 672 ~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~ 751 (1361)
.. .+ ..=..++.++.-.-.-+|..||+.||..|=... .+|. . ..+.+++=-+++.+...
T Consensus 166 ~l-l~---~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la-~~~~---~----~ly~~li~~Ll~~L~~~--------- 224 (1233)
T KOG1824|consen 166 TL-LP---NFHLSILKCLLPQLQSPRLAVRKKAITALGHLA-SSCN---R----DLYVELIEHLLKGLSNR--------- 224 (1233)
T ss_pred cc-Cc---chHHHHHHHHhhcccChHHHHHHHHHHHHHHHH-HhcC---H----HHHHHHHHHHHhccCCC---------
Confidence 00 01 123345666666667899999999997754433 3332 2 33444454555555211
Q ss_pred cccccCCCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHH
Q 000670 752 QGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSL 831 (1361)
Q Consensus 752 ~~~~~~~~~~~~~~~~ihhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~ 831 (1361)
++-.-.-|.+.+++.+++--.+.|. .+-+| .-..+.+|-+ .+..+.+|+-+
T Consensus 225 -----------------------~q~~~~rt~Iq~l~~i~r~ag~r~~---~h~~~--ivp~v~~y~~-~~e~~dDELrE 275 (1233)
T KOG1824|consen 225 -----------------------TQMSATRTYIQCLAAICRQAGHRFG---SHLDK--IVPLVADYCN-KIEEDDDELRE 275 (1233)
T ss_pred -----------------------CchHHHHHHHHHHHHHHHHhcchhh---cccch--hhHHHHHHhc-ccccCcHHHHH
Confidence 0111225677777777766555553 22222 2223444433 23677789999
Q ss_pred HHHHHHHHHHhhhc-CCCCCChhHHHHHHHH
Q 000670 832 AAINCLQTTVLSHS-TKGNLPVAYLNSVLDV 861 (1361)
Q Consensus 832 a~~~sL~~lL~~~~-~~~~~~~~~~~~~~~~ 861 (1361)
..+..|.-+|.... +....-+++.+.+.+-
T Consensus 276 ~~lQale~fl~rcp~ei~p~~pei~~l~l~y 306 (1233)
T KOG1824|consen 276 YCLQALESFLRRCPKEILPHVPEIINLCLSY 306 (1233)
T ss_pred HHHHHHHHHHHhChhhhcccchHHHHHHHHH
Confidence 99999998887643 2222234444444443
No 28
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=54.42 E-value=1.1e+02 Score=32.81 Aligned_cols=91 Identities=15% Similarity=0.225 Sum_probs=59.0
Q ss_pred cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHH
Q 000670 440 RVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVL 519 (1361)
Q Consensus 440 R~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L 519 (1361)
|...+=+....++.....++++.+|..|+-.|.+|+.+-.-+ ...+ .|. -+..+
T Consensus 18 r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-------------------~k~~--l~~-----~~l~~ 71 (178)
T PF12717_consen 18 RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-------------------VKGQ--LFS-----RILKL 71 (178)
T ss_pred hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-------------------ehhh--hhH-----HHHHH
Confidence 445556677888888899999999999999999998732211 0000 111 11111
Q ss_pred hccCCcHHHHHHHHHHHHHHHHh-cCCCccCChHHHHHHHHH
Q 000670 520 YFSTQSTDVRAGTLKILLHVLER-CGEKLHYSWPSILELLRS 560 (1361)
Q Consensus 520 ~~~~~~~eIr~~iL~~L~~iL~~-~g~~L~sgW~~If~IL~~ 560 (1361)
-...+.+||.....++.++... .++.+ +..+-++|..
T Consensus 72 -l~D~~~~Ir~~A~~~~~e~~~~~~~~~i---~~~~~e~i~~ 109 (178)
T PF12717_consen 72 -LVDENPEIRSLARSFFSELLKKRNPNII---YNNFPELISS 109 (178)
T ss_pred -HcCCCHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHH
Confidence 1456789999999999999888 44444 3344444443
No 29
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=53.19 E-value=5.3e+02 Score=34.71 Aligned_cols=220 Identities=13% Similarity=0.098 Sum_probs=126.6
Q ss_pred hHHHHHHHhHhhhccCCChHHHHHHHHHHHHhhHHhhcCCCCCCCCCCC---CCCCC----eeeeHHHHHH-HHHhhccc
Q 000670 369 NVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSS---QKIGS----ISFSVERMIS-ILVNNLHR 440 (1361)
Q Consensus 369 ~il~~i~~~LFesS~~L~~~a~~~fv~ALc~lS~e~l~~~~~~~~~~~~---~~~~~----~~F~L~kL~e-va~~N~~R 440 (1361)
.++.++..++=+.|.. ....-..++..|.......+...-...-|+-. ++..+ +.-.|.++.. ++..+-.+
T Consensus 435 ~iVkai~~qlr~ks~k-t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~ 513 (1233)
T KOG1824|consen 435 LIVKAIQKQLREKSVK-TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEV 513 (1233)
T ss_pred HHHHHHHHHHhhcccc-chhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhh
Confidence 3677776666655555 33344456666776665544333221111100 00010 1112222222 23444455
Q ss_pred chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHh
Q 000670 441 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 520 (1361)
Q Consensus 441 ~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 520 (1361)
.+..-..++.-......++-..+.--|.-+.-+++. ++.+-+ .+.... ....+..++-..+..+.
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvk-virpl~------~~~~~d--------~~~~v~~m~~~tl~rL~ 578 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVK-VIRPLQ------PPSSFD--------ASPYVKTMYDCTLQRLK 578 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHH-HhcccC------CCccCC--------CChhHHHHHHHHHHHHh
Confidence 666666777777777777767777777777777665 342210 000000 00111212222334455
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 000670 521 FSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 600 (1361)
Q Consensus 521 ~~~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL 600 (1361)
....+-|||+..+.|+.+++-.+|+.++.--+.++.|+----+ ++..--.|+..+.+|..--+.---...+...+.-+
T Consensus 579 a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 579 ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 6677889999999999999999999999999999988854332 33444578999999986555421134577888888
Q ss_pred HHHHhc
Q 000670 601 GAYSSQ 606 (1361)
Q Consensus 601 ~~F~~q 606 (1361)
..|++-
T Consensus 657 ~~flrK 662 (1233)
T KOG1824|consen 657 ASFLRK 662 (1233)
T ss_pred HHHHHH
Confidence 888874
No 30
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=52.45 E-value=3e+02 Score=31.22 Aligned_cols=66 Identities=27% Similarity=0.356 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHHHHhhccCC-----CHHHHHHHH--HHHHHHHHhccCCC--CHHHHHHHHHHhHH--hHHHhhhhh
Q 000670 677 DRDKLLFAVFSLLKKLGADE-----RPEVRNSAI--RTLFQTLGSHGQKL--SESMWEDCLWNYVF--PMLDCASHM 742 (1361)
Q Consensus 677 ~~~~LW~~LL~~L~~L~~D~-----R~EVRn~Ai--qTLfril~s~g~~L--s~~~W~~~~~~VLF--PLL~~l~~~ 742 (1361)
.|..||..|+..+.=+++.. .+.|-.-+. -.+|..+-+||+.| +|+.-+..|.+++- +.|+++...
T Consensus 58 ~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~ 134 (237)
T PF08427_consen 58 HWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDM 134 (237)
T ss_pred cHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHH
Confidence 59999999998887776432 234443333 34577777899987 78899999999886 778877654
No 31
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=51.09 E-value=1e+02 Score=36.17 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcc-CCCCHHHH
Q 000670 696 ERPEVRNSAIRTLFQTLGSHG-QKLSESMW 724 (1361)
Q Consensus 696 ~R~EVRn~AiqTLfril~s~g-~~Ls~~~W 724 (1361)
...+||..|++.+|+++..|| ..++...+
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 389999999999999999999 44555444
No 32
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.76 E-value=1.1e+02 Score=39.17 Aligned_cols=162 Identities=15% Similarity=0.207 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhc
Q 000670 442 EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 521 (1361)
Q Consensus 442 ~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~ 521 (1361)
-.-|+-+-..|.++..+++.+.-+-|..+|..+....- ++- + .+...+.+. .++-.|... .
T Consensus 123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa---~~l-------------d-s~~~~rpl~-~mipkfl~f-~ 183 (885)
T KOG2023|consen 123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA---QFL-------------D-SDVLTRPLN-IMIPKFLQF-F 183 (885)
T ss_pred cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH---HHH-------------h-hhcccCchH-HhHHHHHHH-H
Confidence 45689999999999999887788888888887654211 000 0 012234444 233333344 3
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHH
Q 000670 522 STQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTG 601 (1361)
Q Consensus 522 ~~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL~ 601 (1361)
.++++.||...+.|+.+++-...+.+--.=...++.|-..+.+.++.+-+.-...|-++..-....+- ..+...|+-.-
T Consensus 184 ~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~-phl~~IveyML 262 (885)
T KOG2023|consen 184 KHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV-PHLDNIVEYML 262 (885)
T ss_pred hCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc-cchHHHHHHHH
Confidence 56699999999999999998888777767777777776666655555555566666655543333322 12333443322
Q ss_pred HHHhcCCCcchhHHHHHHHHHHH
Q 000670 602 AYSSQKTELNISLTAVGLLWTTT 624 (1361)
Q Consensus 602 ~F~~q~~dlNISLtAi~llW~is 624 (1361)
...|+.|.|++|.|.++.-.++
T Consensus 263 -~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 263 -QRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred -HHccCcchhHHHHHHHHHHHHh
Confidence 2457789999999998754444
No 33
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=49.03 E-value=54 Score=31.65 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhccCCcHH
Q 000670 448 VVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTD 527 (1361)
Q Consensus 448 l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~e 527 (1361)
+..++++...+++..+|..|+.+|..+.... ++ ......+..++..+..++. +.+.+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-----------------~~-----~~~~~~~~~~i~~l~~~l~-~~~~~ 64 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN-----------------ND-----NIQAVVEAGGLPALVQLLK-SEDEE 64 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-----------------HH-----HHHHHHHCCChHHHHHHHh-CCCHH
Confidence 4567888888889999999999999876421 00 0001111123344444433 35789
Q ss_pred HHHHHHHHHHHHHHhcC
Q 000670 528 VRAGTLKILLHVLERCG 544 (1361)
Q Consensus 528 Ir~~iL~~L~~iL~~~g 544 (1361)
+++..+.+|.++.+...
T Consensus 65 v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 65 VVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHHHHHHHHHHccCcH
Confidence 99999999999976543
No 34
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.95 E-value=9.1e+02 Score=33.41 Aligned_cols=332 Identities=14% Similarity=0.101 Sum_probs=175.9
Q ss_pred chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHh
Q 000670 441 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 520 (1361)
Q Consensus 441 ~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 520 (1361)
...+-+.+...+. +.+.|..++..++.+|..++.+ +....++ ....++.++ .+-. +
T Consensus 91 Fs~~~~~l~~~~~--~~stn~svlr~~iscL~~lLra----Qd~~aW~---------------~~~t~~~~~--~il~-~ 146 (1176)
T KOG1248|consen 91 FSDTLNILAPFLT--AESTNGSVLRLAISCLEDLLRA----QDASAWS---------------YSSTKTELF--GILA-F 146 (1176)
T ss_pred HHHHHHHHHHHHh--hhcccchHHHHHHHHHHHHHHH----cchhhhc---------------cccHHHHHH--HHHH-H
Confidence 4555556665555 6678999999999999998763 1111111 111122111 0001 1
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 000670 521 FSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 600 (1361)
Q Consensus 521 ~~~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL 600 (1361)
.....+-||...+++++.+|.+..--.. ..|+..+..|+.||++|-.... +.+
T Consensus 147 ~~h~~pkvRk~a~~~i~~VL~~p~~~~~---------------~~HpA~~~vak~cl~~~e~~~~---~a~--------- 199 (1176)
T KOG1248|consen 147 AAHKKPKVRKAAQRGIAAVLKGPPFAPD---------------AEHPASLSVAKFCLALIESKLG---SAE--------- 199 (1176)
T ss_pred HhcCchHHHHHHHHHHHHHHcCCCCCcc---------------ccchHHHHHHHHHHHHHHhhhc---hHH---------
Confidence 2345679999999999999986432222 2377899999999999976433 111
Q ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhccccccccCCCCcchhhh
Q 000670 601 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDK 680 (1361)
Q Consensus 601 ~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 680 (1361)
| -+-+..|-.+-|-+... . ..
T Consensus 200 ----------~--t~v~~~L~Ll~~~~~~~-p----------------------------------------------~~ 220 (1176)
T KOG1248|consen 200 ----------N--TTVLRSLMLLRDVLSTF-P----------------------------------------------RP 220 (1176)
T ss_pred ----------H--HHHHHHHHHHHHhhccC-C----------------------------------------------HH
Confidence 1 11122222222222211 0 00
Q ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCCCC
Q 000670 681 LLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRG 760 (1361)
Q Consensus 681 LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~~~~~~~~~ 760 (1361)
+.-.+=..+.++.+-.-..|+-.+.|+|.+.+..|-..++.+.-..+ |..+... .++..
T Consensus 221 li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~l--------L~al~~l-~ps~~------------ 279 (1176)
T KOG1248|consen 221 LIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARL--------LTALMTL-SPSEN------------ 279 (1176)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHH--------HHHHHHh-CCCcc------------
Confidence 11111122334446677899999999999999998877776444322 2222211 11100
Q ss_pred CccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 000670 761 GKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTT 840 (1361)
Q Consensus 761 ~~~~~~~ihhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~a~~~sL~~l 840 (1361)
+..-...|..- +++.-..|...-.. -.| ..-.+++..+.++..++..++..++..|+.++
T Consensus 280 -----------D~~~t~~W~~v----~~~~~~~la~~q~~----~~~-~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~i 339 (1176)
T KOG1248|consen 280 -----------DDLLTVAWLKV----LNEAHDILATLQEE----KAL-QALPRLFSLFFTILESLIEELVQAASQSLKEI 339 (1176)
T ss_pred -----------chHHHHHHHHH----HHHHHHHHHHhCHH----HHH-HhhhhhhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 11112445432 22222223222211 111 12345666677777889999999999999999
Q ss_pred HhhhcCCCCCChhHHHHHHHHHHHhhcCCCCCCCCCCccchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHcccC
Q 000670 841 VLSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMI 920 (1361)
Q Consensus 841 L~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~~~~~~~~qe~l~~f~~ly~~~~~~~~~~~~~~~l~il~~~~~~p~~ 920 (1361)
+..... +.+..-...++...+ ++. ..+.-++++.+-.+|..-....+. .+.+.|..|... +
T Consensus 340 l~~sv~---~~~~~c~~~~~~~l~-------~kf---~~~~~~ilqi~s~~fek~G~~s~~-~l~~~L~~l~~l-r---- 400 (1176)
T KOG1248|consen 340 LKESVT---VIDALCSKQLHSLLD-------YKF---HAVWRFILQILSALFEKCGELSGP-ELTKTLEGLCDL-R---- 400 (1176)
T ss_pred hcccCc---ccHHHHHHHHHHHHc-------chH---HHHHHHHHHHHHHHHHHhhhhcCH-HHHHHHHHHHHh-h----
Confidence 865444 112222221222211 110 134567777777888754444443 344444444331 1
Q ss_pred CCCCCccccCCCCHHHHHHHHhcccc
Q 000670 921 THDNYEIEFGHVPPVLRTILEILPLL 946 (1361)
Q Consensus 921 ~~~~~~~d~~~~s~lQ~~vl~~l~~i 946 (1361)
+..|..+...++..|-.++..+
T Consensus 401 ----~~~d~~~~~~ld~~IGSAV~Am 422 (1176)
T KOG1248|consen 401 ----ASPDFFHKLQLDQCIGSAVRAM 422 (1176)
T ss_pred ----cCCCCccHHHHHHHHHHHHHhh
Confidence 3334445558888888877655
No 35
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=47.25 E-value=6.7e+02 Score=31.39 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhcC
Q 000670 566 EKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQK 607 (1361)
Q Consensus 566 ~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL~~F~~q~ 607 (1361)
.++.++.+++.+.-|+. ...+|.+++..||.+|..-....
T Consensus 190 ~~~di~~~L~vldaii~--y~~iP~~sl~~~i~vLCsi~~~~ 229 (464)
T PF11864_consen 190 SEDDIEACLSVLDAIIT--YGDIPSESLSPCIEVLCSIVNSV 229 (464)
T ss_pred cHHHHHHHHHHHHHHHH--cCcCChHHHHHHHHHHhhHhccc
Confidence 45677899999998886 67799999999999999886655
No 36
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=46.19 E-value=4.2e+02 Score=30.98 Aligned_cols=103 Identities=19% Similarity=0.248 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhccCCc
Q 000670 446 DQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQS 525 (1361)
Q Consensus 446 ~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~ 525 (1361)
..+.+.++-...|++..+|+.|+.+|--... +.++ .....+. .| ...+. ..+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L--ld~~--------------------~a~~~l~-l~----~~~~~-~~~ 77 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCL--LDKE--------------------LAKEHLP-LF----LQALQ-KDD 77 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--hChH--------------------HHHHHHH-HH----HHHHH-hCC
Confidence 3444444567888999999999999986543 2210 0111222 12 22222 237
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCChH---------HHHHHHHHhhcccchhHHHHHHHH
Q 000670 526 TDVRAGTLKILLHVLERCGEKLHYSWP---------SILELLRSVADASEKDLITLGFQS 576 (1361)
Q Consensus 526 ~eIr~~iL~~L~~iL~~~g~~L~sgW~---------~If~IL~~v~~~~~~~lv~~aF~~ 576 (1361)
.+|+...++++..++-.||...-..+. .+.+++.......+.++-..+-+.
T Consensus 78 ~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EG 137 (298)
T PF12719_consen 78 EEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEG 137 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 899999999999999999977754443 355555544443333333333333
No 37
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=44.89 E-value=2.1e+02 Score=30.08 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=69.1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCCCCCccchhhccc
Q 000670 693 GADERPEVRNSAIRTLFQTLGSHG--QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHH 770 (1361)
Q Consensus 693 ~~D~R~EVRn~AiqTLfril~s~g--~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~ihh 770 (1361)
....+.-=|+.|++.|-+++.... ..++...|+.+| +.||..++.-........+ ...
T Consensus 13 L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~if-eaL~~~i~~Ek~~y~~~~~-------~~~------------ 72 (155)
T PF11640_consen 13 LSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIF-EALFRCIEKEKEAYSRKKS-------SSA------------ 72 (155)
T ss_pred HhccccchHHHHHHHHHHHHcCccccccCCcchHHHHH-HHHHHHHHHHHHHHhcCCC-------ccc------------
Confidence 344566679999999999998654 889999998876 5567666654432210000 000
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhH----HHHHHHHHHHHHHhh
Q 000670 771 SRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKE----VSLAAINCLQTTVLS 843 (1361)
Q Consensus 771 sr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~e----ls~a~~~sL~~lL~~ 843 (1361)
+.-+....=.+.+.-++..++......+.. +.-..|++++-+.+.....+ ++.--.++|+.+|..
T Consensus 73 s~~~~~~~RL~~~a~~lR~~ve~~~~~~k~--------kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~ 141 (155)
T PF11640_consen 73 STATTAESRLSSCASALRLFVEKSNSRLKR--------KTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSY 141 (155)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccc--------chHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCC
Confidence 000000111234444455555444444432 23466888888888766544 444555666666543
No 38
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=43.56 E-value=1.3e+02 Score=29.18 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhcccccccc
Q 000670 591 DCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQN 670 (1361)
Q Consensus 591 ~~~~~lI~tL~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~ 670 (1361)
+++..++.-+-+. -.+.|..+-.-|...+.+++...+...
T Consensus 23 ~~l~~Il~pVL~~-~~D~d~rVRy~AcEaL~ni~k~~~~~~--------------------------------------- 62 (97)
T PF12755_consen 23 KYLDEILPPVLKC-FDDQDSRVRYYACEALYNISKVARGEI--------------------------------------- 62 (97)
T ss_pred HHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 3344444443322 234578888889999998876665320
Q ss_pred CCCCcchhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 000670 671 HSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTL 712 (1361)
Q Consensus 671 ~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril 712 (1361)
-...-.+|..|.+++.|+.+.||++| +.|=|.|
T Consensus 63 --------l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 63 --------LPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred --------HHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 01233366888899999999999999 5555544
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.93 E-value=2.9e+02 Score=34.78 Aligned_cols=213 Identities=15% Similarity=0.202 Sum_probs=116.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhccCCcHHHH
Q 000670 450 GHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVR 529 (1361)
Q Consensus 450 ~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~eIr 529 (1361)
..|+.+..+++..++++|+-+|..++... .. -....+..-.+.|+..++..+...-++
T Consensus 155 p~fi~Ll~s~~~~v~eQavWALgNIagds------------------~~----~Rd~vl~~g~l~pLl~~l~~~~~~~~l 212 (514)
T KOG0166|consen 155 PIFIQLLSSPSADVREQAVWALGNIAGDS------------------PD----CRDYVLSCGALDPLLRLLNKSDKLSML 212 (514)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhccccCC------------------hH----HHHHHHhhcchHHHHHHhccccchHHH
Confidence 44899999999999999999999876421 11 112445555667777765554444677
Q ss_pred HHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhc---ccchhHHHHHHHHHHHHHhccCCC----CChhhHHHHHHHHHH
Q 000670 530 AGTLKILLHVLERCGEKLHYSWPSILELLRSVAD---ASEKDLITLGFQSLRFIMNDGLSS----IPTDCIHECVDVTGA 602 (1361)
Q Consensus 530 ~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~---~~~~~lv~~aF~~LqlI~~dfL~~----Lp~~~~~~lI~tL~~ 602 (1361)
+.+.=+|.++..... =.--|..|=.+|..... ..++.+..-|.-.+..+.+.--.. +.......+|++|..
T Consensus 213 Rn~tW~LsNlcrgk~--P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~ 290 (514)
T KOG0166|consen 213 RNATWTLSNLCRGKN--PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH 290 (514)
T ss_pred HHHHHHHHHHHcCCC--CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC
Confidence 778888888765432 23456665555544432 234445555555555444221111 112334455555544
Q ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhccccccccCCCCcchhhhhH
Q 000670 603 YSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLL 682 (1361)
Q Consensus 603 F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW 682 (1361)
.-- ++-..|+..+ +. +.. ++. .++. .-.+.-
T Consensus 291 ~~~-----~v~~PaLRai---GN-Ivt----G~d-----------------------~QTq------------~vi~~~- 321 (514)
T KOG0166|consen 291 SSP-----KVVTPALRAI---GN-IVT----GSD-----------------------EQTQ------------VVINSG- 321 (514)
T ss_pred CCc-----ccccHHHhhc---cc-eee----ccH-----------------------HHHH------------HHHhcC-
Confidence 332 2222222211 11 111 100 0000 001111
Q ss_pred HHHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhh
Q 000670 683 FAVFSLLKKLGA-DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHM 742 (1361)
Q Consensus 683 ~~LL~~L~~L~~-D~R~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~ 742 (1361)
+|..|..+-. .+..-+|+.|.=|+-+|-. |. .+.=+.++..=++|.+-++.+.
T Consensus 322 --~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~---~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 322 --ALPVLSNLLSSSPKESIKKEACWTISNITA--GN---QEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred --hHHHHHHHhccCcchhHHHHHHHHHHHhhc--CC---HHHHHHHHHcccHHHHHHHHhc
Confidence 3455566555 4444499999999888876 54 3345678888888988887643
No 40
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=41.73 E-value=3.1e+02 Score=29.38 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhccCCcHHHHHHHHHHHHHH
Q 000670 460 NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHV 539 (1361)
Q Consensus 460 n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~eIr~~iL~~L~~i 539 (1361)
|+.+|..|+.++.+++.++-. ..+..+ |...-.-...++.||+..+.+|.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--------------------------~ve~~~--~~l~~~L~D~~~~VR~~al~~Ls~L 52 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--------------------------LVEPYL--PNLYKCLRDEDPLVRKTALLVLSHL 52 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--------------------------HHHhHH--HHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 578999999999999875310 011000 1111112456889999999999999
Q ss_pred HHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHHhcCCCcchhHHHHHH
Q 000670 540 LERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGL 619 (1361)
Q Consensus 540 L~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL~~F~~q~~dlNISLtAi~l 619 (1361)
+.+. .++..=..++.++.... +.++.+...|=.++.-+...--+.. -...+++++..|.....+..+.-....-
T Consensus 53 i~~d--~ik~k~~l~~~~l~~l~-D~~~~Ir~~A~~~~~e~~~~~~~~~---i~~~~~e~i~~l~~~~~~~~~~~~~~~~ 126 (178)
T PF12717_consen 53 ILED--MIKVKGQLFSRILKLLV-DENPEIRSLARSFFSELLKKRNPNI---IYNNFPELISSLNNCYEHPVYGPLSREK 126 (178)
T ss_pred HHcC--ceeehhhhhHHHHHHHc-CCCHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHhCccccccccccCHHH
Confidence 9863 33322122256666554 4556666666666665554321222 2344555555555543222121122344
Q ss_pred HHHHHHHHHcc
Q 000670 620 LWTTTDFIAKG 630 (1361)
Q Consensus 620 lW~isD~L~~~ 630 (1361)
.+.+-+|+-+.
T Consensus 127 ~~~I~~fll~~ 137 (178)
T PF12717_consen 127 RKKIYKFLLDF 137 (178)
T ss_pred HHHHHHHHHHH
Confidence 55666666654
No 41
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=41.54 E-value=6.2e+02 Score=29.37 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc-CC---CCHHHHHHHHHHhHHhHHHhhhhhhccCCccccccc
Q 000670 679 DKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG-QK---LSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGK 754 (1361)
Q Consensus 679 ~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~s~g-~~---Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~~~ 754 (1361)
...|-.++-.+-.+.-|..+++|-.+++.|..++..-. .. |..--...+|.+.++|.+-.+-.
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~------------- 180 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPP------------- 180 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCC-------------
Confidence 35566666777788899999999999999999997432 22 22222334444444444443310
Q ss_pred ccCCCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhccc--ccccchHHHHHH-HHHHHHHHHcCChhHHHH
Q 000670 755 ELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFL--ANLSNFWTGWES-LLHFVKNSILNGSKEVSL 831 (1361)
Q Consensus 755 ~~~~~~~~~~~~~ihhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L--~~~~~F~~~W~~-lL~~l~~~~~~~~~els~ 831 (1361)
-+...+...-...+...+.+++..-+..= .....+.+...+ +|..+..........+..
T Consensus 181 ------------------~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~ 242 (282)
T PF10521_consen 181 ------------------ITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRT 242 (282)
T ss_pred ------------------CCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHH
Confidence 01112333444445555555554433111 111222333222 444333333334588889
Q ss_pred HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHhhc
Q 000670 832 AAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQ 867 (1361)
Q Consensus 832 a~~~sL~~lL~~~~~~~~~~~~~~~~~~~~w~~i~~ 867 (1361)
+.++.+..++..++.. .-...+..+-++..+..
T Consensus 243 ~ll~~l~~~i~~lGi~---~~~hL~rii~~l~~~l~ 275 (282)
T PF10521_consen 243 VLLQQLPPIIDELGIS---SVKHLQRIIPVLSQILE 275 (282)
T ss_pred HHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHhc
Confidence 9999999998876642 23455555555554433
No 42
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.23 E-value=1.1e+03 Score=31.45 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=73.5
Q ss_pred HHHHHHhhccCC-CHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH---HHhHHhHHHhhhhhhccCCcccccccccCCCC
Q 000670 685 VFSLLKKLGADE-RPEVRNSAIRTLFQTLGSHGQKLSESMWEDCL---WNYVFPMLDCASHMAATSSKDEWQGKELGTRG 760 (1361)
Q Consensus 685 LL~~L~~L~~D~-R~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~---~~VLFPLL~~l~~~~~~~s~~~~~~~~~~~~~ 760 (1361)
++..+.++-.|+ ..-||=.|++||-=.++.. .|+++.....+ +..+|.|+..+.+
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~--nF~~dsFlp~lenlf~~lfkll~~~~e------------------- 585 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW--NFSEDSFLPYLENLFVLLFKLLKAVEE------------------- 585 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhc--cCChhhhhhhHHHHHHHHHHHHHHHhh-------------------
Confidence 455667777886 8899999999987777743 34444444333 3344445544421
Q ss_pred CccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHH
Q 000670 761 GKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILN--GSKEVSLAAINCLQ 838 (1361)
Q Consensus 761 ~~~~~~~ihhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~--~~~els~a~~~sL~ 838 (1361)
-||++.+|+.++.+..+-=+.+.. .=..+++|+..+... +..-+..|.+..|.
T Consensus 586 -------------------~Dtk~~VL~~ls~lI~r~~e~I~P------~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~ 640 (978)
T KOG1993|consen 586 -------------------CDTKTSVLNLLSTLIERVSEHIAP------YASTIVQYLPLLWEESEEEPLLRCALLATLR 640 (978)
T ss_pred -------------------hhhHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHhhhccCcHHHHHHHHHHH
Confidence 167888888888887655554431 223456666666542 33446778888888
Q ss_pred HHHhhhcCC
Q 000670 839 TTVLSHSTK 847 (1361)
Q Consensus 839 ~lL~~~~~~ 847 (1361)
+++...+..
T Consensus 641 ~lV~alg~q 649 (978)
T KOG1993|consen 641 NLVNALGAQ 649 (978)
T ss_pred HHHHHhccC
Confidence 888776643
No 43
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=37.69 E-value=71 Score=30.19 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 000670 781 ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 839 (1361)
Q Consensus 781 ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~a~~~sL~~ 839 (1361)
+.+-+++..+..+...+.+.|. ..|..+++.+......++.++...|+.+++.
T Consensus 33 ~vre~il~ci~qil~~~~~~i~------SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 33 DVRELILECILQILQSRGENIK------SGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH------hccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 7888899999999988887664 4699999999999998899999999999875
No 44
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=35.86 E-value=8e+02 Score=28.98 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhcCCCCCChhHHHHHH
Q 000670 780 DETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVL 859 (1361)
Q Consensus 780 ~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~a~~~sL~~lL~~~~~~~~~~~~~~~~~~ 859 (1361)
.+|+.-+|.++.++|.+++.. +...+-..+|++.+.++++.+..+=...+.+.+.=+....+... -..++++.+.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~----d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~-~~~ei~~~~~ 131 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLP----DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE-DSEEIFEELK 131 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc-cHHHHHHHHH
Confidence 379999999999999888741 22345678899999999988775333345555544444433222 2457777777
Q ss_pred HHHHHhhcCCCCCCCCCCccchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHcccCCCCCCccccCC--CCHHHH
Q 000670 860 DVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFGH--VPPVLR 937 (1361)
Q Consensus 860 ~~w~~i~~~~~~~~~~~~~~~~qe~l~~f~~ly~~~~~~~~~~~~~~~l~il~~~~~~p~~~~~~~~~d~~~--~s~lQ~ 937 (1361)
.+..+++.-... ..+..+.++.++.-+--. ..-+.+.++..+..|.......++..+...+.+.. -+++..
T Consensus 132 ~~L~~~l~d~s~-----~~~~R~~~~~aLai~~fv--~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 132 PVLKRILTDSSA-----SPKARAACLEALAICTFV--GGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHhCCcc-----chHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 777665543211 123446666665554221 23456777766666663322112222212222222 367888
Q ss_pred HHHHhccccC
Q 000670 938 TILEILPLLS 947 (1361)
Q Consensus 938 ~vl~~l~~i~ 947 (1361)
+.|++-.++-
T Consensus 205 aAL~aW~lLl 214 (309)
T PF05004_consen 205 AALSAWALLL 214 (309)
T ss_pred HHHHHHHHHH
Confidence 8888855443
No 45
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=34.88 E-value=3.5e+02 Score=28.57 Aligned_cols=87 Identities=20% Similarity=0.075 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCeeeeHHHHHHHHHhhccc----------chhhHHHHHHHHHHHhcCC
Q 000670 390 VKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----------VEPLWDQVVGHFLELADNS 459 (1361)
Q Consensus 390 ~~~fv~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~N~~R----------~~~iW~~l~~hli~v~~~~ 459 (1361)
...+++.||.++......... .........++.|+|+-+..+-..+-+. ...+.+.+..++...+.++
T Consensus 8 a~~vf~~Lc~L~~~~~~~~~~--~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~ 85 (168)
T PF12783_consen 8 AFLVFRDLCSLSSKPSDPGNS--PDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS 85 (168)
T ss_pred HHHHHHHHHHHhCCCCCCCCC--cchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 345678899998543221110 0000122344577776555543222111 3567899999999999988
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 000670 460 NQHLRNIALDALDQSICAV 478 (1361)
Q Consensus 460 n~~lr~~Avd~L~~li~~~ 478 (1361)
+..+-..+...+..++.++
T Consensus 86 ~~~i~~~slri~~~l~~~~ 104 (168)
T PF12783_consen 86 DFPIFSRSLRIFLTLLSRF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8899899999999888754
No 46
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=34.31 E-value=7.9e+02 Score=28.49 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=45.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhc
Q 000670 775 AQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHS 845 (1361)
Q Consensus 775 ~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~a~~~sL~~lL~~~~ 845 (1361)
+.+.|...-..+..-+.-+...+ .+.+...+.|-.++=.+-.++...+.++-..|+.+|+.++....
T Consensus 85 ~~~~WK~~~~~~~~~l~w~v~~~----~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 85 QRQPWKSNPGLASHVLSWIVLSQ----LDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred ccCCcccCCcccHHHHHHHHHhc----CCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 45788865543322222222212 22355667888888888888888899999999999999997654
No 47
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=32.07 E-value=68 Score=30.54 Aligned_cols=49 Identities=12% Similarity=0.302 Sum_probs=34.0
Q ss_pred hhhhhHH--HHHHHHHHHHHHHHHhhhccccc-ccchHHHHHHHHHHHHHHH
Q 000670 774 TAQKQWD--ETLVLVLGGIARLLRSFFPFLAN-LSNFWTGWESLLHFVKNSI 822 (1361)
Q Consensus 774 ~~~k~W~--ET~vlaL~gl~~lf~~~~~~L~~-~~~F~~~W~~lL~~l~~~~ 822 (1361)
.+...|- |+..-++.|++++|..|+..... .....---..|.+|++.+.
T Consensus 14 ~esRT~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~ 65 (104)
T KOG1766|consen 14 PESRTWGDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLA 65 (104)
T ss_pred cccccccchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHh
Confidence 3346676 89999999999999999987632 2222222456778777654
No 48
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=31.85 E-value=7e+02 Score=28.64 Aligned_cols=145 Identities=21% Similarity=0.255 Sum_probs=82.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhccCCcHHHHHH
Q 000670 452 FLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAG 531 (1361)
Q Consensus 452 li~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~eIr~~ 531 (1361)
+..+..+|++.+|.+|..+|..+.... +.+ ...+..+-.-.+.+.+...+.+++..
T Consensus 59 I~~lL~~p~~~vr~~AL~aL~Nls~~~-----------------en~-------~~Ik~~i~~Vc~~~~s~~lns~~Q~a 114 (254)
T PF04826_consen 59 IGSLLNDPNPSVREKALNALNNLSVND-----------------ENQ-------EQIKMYIPQVCEETVSSPLNSEVQLA 114 (254)
T ss_pred HHHHcCCCChHHHHHHHHHHHhcCCCh-----------------hhH-------HHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 345667789999999999999764310 000 01121121222333445567788888
Q ss_pred HHHHHHHH-HHhcCCCc-cCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHH--HHHHHHh--
Q 000670 532 TLKILLHV-LERCGEKL-HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVD--VTGAYSS-- 605 (1361)
Q Consensus 532 iL~~L~~i-L~~~g~~L-~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~--tL~~F~~-- 605 (1361)
.|+.|.++ +....+.+ ..+=+.+|.+|..-. + ..=+++|+.+++ |+.=| +...+++. ++..|..
T Consensus 115 gLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~---~----~~k~~vLk~L~n--LS~np-~~~~~Ll~~q~~~~~~~Lf 184 (254)
T PF04826_consen 115 GLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGS---E----KTKVQVLKVLVN--LSENP-DMTRELLSAQVLSSFLSLF 184 (254)
T ss_pred HHHHHHccCCCcchhhhHHhhHHHHHHHHHcCC---h----HHHHHHHHHHHH--hccCH-HHHHHHHhccchhHHHHHH
Confidence 88888887 22223333 344445555554321 1 233778887764 33222 22333332 2444443
Q ss_pred -cCCCcchhHHHHHHHHHHHHHHHcc
Q 000670 606 -QKTELNISLTAVGLLWTTTDFIAKG 630 (1361)
Q Consensus 606 -q~~dlNISLtAi~llW~isD~L~~~ 630 (1361)
.+.+-++-+.++.+|-++++.+++.
T Consensus 185 ~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 185 NSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred ccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 3346778889999999999998864
No 49
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.78 E-value=1.7e+03 Score=30.73 Aligned_cols=383 Identities=16% Similarity=0.118 Sum_probs=195.2
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhcc
Q 000670 443 PLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFS 522 (1361)
Q Consensus 443 ~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~ 522 (1361)
..-+.|.++.+...++|++.||--|..++-|+...+- . + .+. ..+..+.--+..++..
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-p---------------~-----iqk-~~~e~l~~aL~~~ld~ 442 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-P---------------E-----IQK-KHHERLPPALIALLDS 442 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-H---------------H-----HHH-HHHHhccHHHHHHhcc
Confidence 3456777788888899999999999999999876442 1 1 111 1221222223345567
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCCccCC-hHHHHH-HHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHH
Q 000670 523 TQSTDVRAGTLKILLHVLERCGEKLHYS-WPSILE-LLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 600 (1361)
Q Consensus 523 ~~~~eIr~~iL~~L~~iL~~~g~~L~sg-W~~If~-IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL 600 (1361)
..++.|+.-.-.++-+..+.+...+-.. -+.+++ .+........+.+...+-.++--|...-=..+ ...|..++..|
T Consensus 443 ~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F-~pY~d~~Mp~L 521 (1075)
T KOG2171|consen 443 TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKF-IPYFDRLMPLL 521 (1075)
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhh-HhHHHHHHHHH
Confidence 7777888777777777777766544322 333444 33332222222222333333333332110000 14678888889
Q ss_pred HHHHhcCCCc---chhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhccccccccCCCCcch
Q 000670 601 GAYSSQKTEL---NISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVD 677 (1361)
Q Consensus 601 ~~F~~q~~dl---NISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 677 (1361)
.+|..+..+- +...+++..+-.++--+.+. +. ..
T Consensus 522 ~~~L~n~~~~d~r~LrgktmEcisli~~AVGke--------~F-----------------------------------~~ 558 (1075)
T KOG2171|consen 522 KNFLQNADDKDLRELRGKTMECLSLIARAVGKE--------KF-----------------------------------LP 558 (1075)
T ss_pred HHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh--------hh-----------------------------------hH
Confidence 9988876532 22223333333322222211 00 00
Q ss_pred hhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccc--
Q 000670 678 RDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKE-- 755 (1361)
Q Consensus 678 ~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~~~~-- 755 (1361)
...-.+.++..+..=+.|.|...|..-++..-|+-..+|..|.+ ++..|+-|++..........-.++....+
T Consensus 559 ~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p-----~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~ 633 (1075)
T KOG2171|consen 559 LAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAP-----FLPVVMPPLLKTARLDPDVALSDEEDEEEEQ 633 (1075)
T ss_pred hHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHh-----HHHHHhHHHHHhhccCCcccCcCchhhhhcc
Confidence 11122233333332256777778898898888888899998887 57788888888776321110001100000
Q ss_pred -c-----CCCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHH
Q 000670 756 -L-----GTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEV 829 (1361)
Q Consensus 756 -~-----~~~~~~~~~~~ihhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~el 829 (1361)
. ..-+|+ .++.|+-+ --.=.+|...+|..++....-.|..- ..-|..+.-.. +-..-...|
T Consensus 634 ~~~~~e~~~~~~~-e~~~I~Ts----vl~eK~~A~~~Lv~~a~~lk~~F~pY------ve~v~~l~v~~--l~f~fhdgV 700 (1075)
T KOG2171|consen 634 DLDGWEVVELGDK-ENIGIRTS----VLDEKETACEALGEYAKELKEAFAPY------VEQVVELMVPL--LKFYFHDGV 700 (1075)
T ss_pred ccccchhhccCCc-eeeeeeeh----hHHHHHHHHHHHHHHHHhhhhhhhhH------HHHHHHHHHHH--HHhhhhhHH
Confidence 0 001222 13444322 11112666677777776665555321 12244311111 111233567
Q ss_pred HHHHHHHHHHHHhhhcC-CCCCChhHHHHHHHHHHH-hhc-CCCCCCCCCCccchHHHHHHHHHHHHHH-HhhCCHHHHH
Q 000670 830 SLAAINCLQTTVLSHST-KGNLPVAYLNSVLDVYEY-ALQ-KSPNYSDNAAGKVKQEILHGLGELYVQA-QKMFDDRMYG 905 (1361)
Q Consensus 830 s~a~~~sL~~lL~~~~~-~~~~~~~~~~~~~~~w~~-i~~-~~~~~~~~~~~~~~qe~l~~f~~ly~~~-~~~~~~~~~~ 905 (1361)
-.|+.+++-+++..... .+. .+......|..... ... ...++ ......+.+.+|....+.. ...+..+.++
T Consensus 701 R~aa~~~~p~ll~~~~~A~~~-~p~~l~~l~~~~~~~l~~~l~~E~----e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~ 775 (1075)
T KOG2171|consen 701 RKAAAESMPQLLTCALKACQG-GPEYLKQLWEAIRPALIKALEEEP----ETEVLSEILESFAECIEVMGDNCLNEDGLE 775 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHhcCcccCCcHHHH
Confidence 77788877777755432 111 12344434433221 111 11122 1245678888999888743 3566777777
Q ss_pred HHHHHHHHH
Q 000670 906 QLLAIIDLA 914 (1361)
Q Consensus 906 ~~l~il~~~ 914 (1361)
.++..+...
T Consensus 776 ~~~~~~~~~ 784 (1075)
T KOG2171|consen 776 ALLGGLLAQ 784 (1075)
T ss_pred HHHHHHHHH
Confidence 666655544
No 50
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=28.45 E-value=1.5e+03 Score=33.80 Aligned_cols=260 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhc-----cHHHHhcc
Q 000670 448 VVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVIS-----PLRVLYFS 522 (1361)
Q Consensus 448 l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~-----pl~~L~~~ 522 (1361)
..+.|+....++++.+.+-|++.|.-++. +..+|..+.. |+..+ -.
T Consensus 1529 ~i~~Li~lL~s~~~~vqe~aa~ll~~l~~----------------------------~~~~~~~~~~~~aI~pLv~~-l~ 1579 (2102)
T PLN03200 1529 AIEPLIPLLESPSQAVQQLAAELLSHLLA----------------------------EEHFQQDITTQNAVVPLVRL-AG 1579 (2102)
T ss_pred hHHHHHHHHcCCcHHHHHHHHHHHHHHhc----------------------------chHHhhhhhcccchHHHHHH-hc
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCCccCCh----------HHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhh
Q 000670 523 TQSTDVRAGTLKILLHVLERCGEKLHYSW----------PSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDC 592 (1361)
Q Consensus 523 ~~~~eIr~~iL~~L~~iL~~~g~~L~sgW----------~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~ 592 (1361)
......|+...++| +++...| ..+..++..+.-...-.|+..|+.+|.-+ +..=...+
T Consensus 1580 ~~~~~~~~~A~~aL--------~~~~~~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~----~~~~~~~~ 1647 (2102)
T PLN03200 1580 IGILSLQQRAVKAL--------ESISLSWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNI----LRFSSEYY 1647 (2102)
T ss_pred CCChhHHHHHHHHH--------HHhhcccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHH----hccCceeE
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhccccccccCC
Q 000670 593 IHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHS 672 (1361)
Q Consensus 593 ~~~lI~tL~~F~~q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~ 672 (1361)
|..-|-+|.+..+.+ +...-..|+.++-.+..-=.+-..
T Consensus 1648 ~~v~~~~lvkl~~s~-~e~~~~~a~~~l~~~~~~d~~~~~---------------------------------------- 1686 (2102)
T PLN03200 1648 FEVPVAVLVKLLRST-SESTVVVALNALLVLERDDSSSAE---------------------------------------- 1686 (2102)
T ss_pred EEeeHHHHHHHHhcc-chhHHHHHHHHHHHHHhcchhHHH----------------------------------------
Q ss_pred CCcchhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccc
Q 000670 673 IGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSH-GQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEW 751 (1361)
Q Consensus 673 ~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~s~-g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~ 751 (1361)
.-++.|||+.|.+.+.+| +.-.....-+.+|+++=..-...-+....+-+
T Consensus 1687 -------------------------~~~~~g~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 1737 (2102)
T PLN03200 1687 -------------------------QMAESGAIEALLELLRSHQCEEAAARLLEALFNNVKVREMKATKYAIAPLS---- 1737 (2102)
T ss_pred -------------------------HHHHhhhHHHHHHHHHhccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHH----
Q ss_pred cccccCCCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHH
Q 000670 752 QGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSL 831 (1361)
Q Consensus 752 ~~~~~~~~~~~~~~~~ihhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~ 831 (1361)
+++..+- .+-..-+.++--.++++| ..+.|....++..+-..++..++. +..+|...
T Consensus 1738 -------------~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 1794 (2102)
T PLN03200 1738 -------------QYLLDPQ-----TRSQQARLLAALALGDLF--QHEGLARSTDAVSACRALVSLLED---QPTEEMKM 1794 (2102)
T ss_pred -------------HHhcCcc-----cccHHHHHHHHHHhccch--hhhhhhhccCcHHHHHHHHHHhcc---CchHHHHH
Q ss_pred HHHHHHHHHH
Q 000670 832 AAINCLQTTV 841 (1361)
Q Consensus 832 a~~~sL~~lL 841 (1361)
.++-+||+++
T Consensus 1795 ~~~~~~~~~~ 1804 (2102)
T PLN03200 1795 VAICALQNLV 1804 (2102)
T ss_pred HHHHHHHHHH
No 51
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=28.07 E-value=9.7e+02 Score=28.38 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=73.5
Q ss_pred hccHHHHhccCCcHHHHH-HHHHHHHHHHHhcCCCccCChHHHHHHH-HHhh----c--ccchhHHHHHHHHHHHHHhcc
Q 000670 513 ISPLRVLYFSTQSTDVRA-GTLKILLHVLERCGEKLHYSWPSILELL-RSVA----D--ASEKDLITLGFQSLRFIMNDG 584 (1361)
Q Consensus 513 l~pl~~L~~~~~~~eIr~-~iL~~L~~iL~~~g~~L~sgW~~If~IL-~~v~----~--~~~~~lv~~aF~~LqlI~~df 584 (1361)
+.++..-|..+ .++.|+ .+|.++..++.+-++.+...=+.|++.+ ..+- + ...++.-..=|.-++-|+...
T Consensus 73 ~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~ 151 (319)
T PF08767_consen 73 LDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHC 151 (319)
T ss_dssp HHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHh
Confidence 33333445443 333333 4677888888887877776666666433 2221 1 123455556667777777754
Q ss_pred C---CCCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHc
Q 000670 585 L---SSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAK 629 (1361)
Q Consensus 585 L---~~Lp~~~~~~lI~tL~~F~~q~~dlNISLtAi~llW~isD~L~~ 629 (1361)
+ -.+|++.|..+++++ .++-+..+-+|+-+++..+-.+-+.+.+
T Consensus 152 f~~l~~lp~~~f~~~idsi-~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 152 FPALLQLPPEQFKLVIDSI-VWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp THHHHHS-HHHHHHHHHHH-HHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4 358999999999999 6777777999999988888766666664
No 52
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=27.83 E-value=4e+02 Score=27.94 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHhcC--CCc-cCChHHHHHHHHHhhc-cc----------c------hhHHHHHHHHHHHHHhccCC
Q 000670 527 DVRAGTLKILLHVLERCG--EKL-HYSWPSILELLRSVAD-AS----------E------KDLITLGFQSLRFIMNDGLS 586 (1361)
Q Consensus 527 eIr~~iL~~L~~iL~~~g--~~L-~sgW~~If~IL~~v~~-~~----------~------~~lv~~aF~~LqlI~~dfL~ 586 (1361)
.=|...|+-|.+++.... ..+ ..+|..||+.|-.... ++ . +.=...+-.+|++++.-...
T Consensus 19 keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~~lR~~ve~~~~ 98 (155)
T PF11640_consen 19 KERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCASALRLFVEKSNS 98 (155)
T ss_pred chHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446677777888887654 555 4699999977744322 10 0 11255677889999998888
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHc
Q 000670 587 SIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAK 629 (1361)
Q Consensus 587 ~Lp~~~~~~lI~tL~~F~~q~~dlNISLtAi~llW~isD~L~~ 629 (1361)
.++...+..+|+.+..-.....+--..--+..+...+.+.|..
T Consensus 99 ~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~ 141 (155)
T PF11640_consen 99 RLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSY 141 (155)
T ss_pred hcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCC
Confidence 9998888888888888877664333333455666666555553
No 53
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=24.86 E-value=1.8e+02 Score=28.15 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=50.3
Q ss_pred HHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 000670 511 AVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIM 581 (1361)
Q Consensus 511 ~ll~pl~~L~~~~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~ 581 (1361)
.++.|+... ...++..||....|+|.+|....+..+-.--..||+.|.....+.++ -|+.|-+.|.-..
T Consensus 27 ~Il~pVL~~-~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~-~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKC-FDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE-NVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-hHHHHHHHHHHHh
Confidence 355565544 45678899999999999999887776666778888888776665553 4777777665443
No 54
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=23.47 E-value=3.7e+02 Score=26.58 Aligned_cols=76 Identities=13% Similarity=0.232 Sum_probs=61.2
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHHHH
Q 000670 525 STDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYS 604 (1361)
Q Consensus 525 ~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL~~F~ 604 (1361)
...-|++.+..+..+++-.|..+.+.=+-|...|.++-. .+++-..||+|....+ ..|+.+.+..+++......
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i----~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLI----KTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHH
Confidence 446699999999999999999999999999999998765 5568889999887554 4577788888887766554
Q ss_pred hc
Q 000670 605 SQ 606 (1361)
Q Consensus 605 ~q 606 (1361)
-|
T Consensus 102 ~~ 103 (107)
T smart00802 102 LP 103 (107)
T ss_pred HH
Confidence 43
No 55
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.32 E-value=4.4e+02 Score=34.71 Aligned_cols=97 Identities=11% Similarity=0.199 Sum_probs=63.3
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCCc-cCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHh-cc-CCCCC----------
Q 000670 523 TQSTDVRAGTLKILLHVLERCGEKL-HYSWPSILELLRSVADASEKDLITLGFQSLRFIMN-DG-LSSIP---------- 589 (1361)
Q Consensus 523 ~~~~eIr~~iL~~L~~iL~~~g~~L-~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~-df-L~~Lp---------- 589 (1361)
+.-.|=|+-.+.+|+.+-..|.... .+|-+.++..|..=.. +++++..+.+++--+++ |- -....
T Consensus 34 sTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~ 111 (970)
T KOG0946|consen 34 STLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGL 111 (970)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHH
Confidence 3445677788888888877776655 4788888888865433 56788888887764443 21 11111
Q ss_pred --hhhH---HHHHHHHHHHHhcCCCcchhHHHHHHHHH
Q 000670 590 --TDCI---HECVDVTGAYSSQKTELNISLTAVGLLWT 622 (1361)
Q Consensus 590 --~~~~---~~lI~tL~~F~~q~~dlNISLtAi~llW~ 622 (1361)
.+.| .+.|.++..|..+. |+-+-+.||.++-.
T Consensus 112 ~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsa 148 (970)
T KOG0946|consen 112 WIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSA 148 (970)
T ss_pred HHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHH
Confidence 0111 25677777777775 88888889888743
No 56
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.11 E-value=1.9e+03 Score=29.03 Aligned_cols=269 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhHHHHHHhccHHHHhccCCcHH
Q 000670 448 VVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTD 527 (1361)
Q Consensus 448 l~~hli~v~~~~n~~lr~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~e 527 (1361)
+..-+.. ..+|++..|..|-+.|.++.. ..|..-+..--++|...+...+
T Consensus 3 ~~~~le~-tlSpD~n~~~~Ae~~l~~~~~-----------------------------~nf~~F~~~Ls~vl~n~~~~~~ 52 (859)
T KOG1241|consen 3 LLELLEK-TLSPDQNVRKRAEKQLEQAQS-----------------------------QNFPQFLVLLSEVLANDNSSDV 52 (859)
T ss_pred HHHHHHH-HcCCCcchHHHHHHHHHHHHh-----------------------------ccHHHHHHHHHHHHhccCCcHH
Q ss_pred HHHHHHHHHHHHHHhcCCCcc----CCh--------HHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHH
Q 000670 528 VRAGTLKILLHVLERCGEKLH----YSW--------PSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHE 595 (1361)
Q Consensus 528 Ir~~iL~~L~~iL~~~g~~L~----sgW--------~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~ 595 (1361)
+|...==.||+-|..+.+..+ +-| ..|=..+..+-...++..-..|=+|+-.|.. -.||.+..+.
T Consensus 53 ~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~---~ElP~n~wp~ 129 (859)
T KOG1241|consen 53 ARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIAC---IELPQNQWPE 129 (859)
T ss_pred HHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHH---hhCchhhCHH
Q ss_pred HHHHHHHHHhcCCCc---chhHHHHHHHHHHHHHHHcccCCCchhhhhhhhcccCCCccccCcchhhhhhccccccccCC
Q 000670 596 CVDVTGAYSSQKTEL---NISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHS 672 (1361)
Q Consensus 596 lI~tL~~F~~q~~dl---NISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~ 672 (1361)
+|.++.+=+.+..-. .=+|.|+|+ +-+.......+.+
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGy-------ice~i~pevl~~~--------------------------------- 169 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGY-------ICEDIDPEVLEQQ--------------------------------- 169 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHH-------HHccCCHHHHHHH---------------------------------
Q ss_pred CCcchhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCccccc
Q 000670 673 IGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQ 752 (1361)
Q Consensus 673 ~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~ 752 (1361)
.+.....+..+. ....+-..||=+|...|...|.--+..|..+.=...+-+|+- +-++
T Consensus 170 -----sN~iLtaIv~gm--rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvc---------------Eatq 227 (859)
T KOG1241|consen 170 -----SNDILTAIVQGM--RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVC---------------EATQ 227 (859)
T ss_pred -----HhHHHHHHHhhc--cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeee---------------eccc
Q ss_pred ccccCCCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHHH
Q 000670 753 GKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLA 832 (1361)
Q Consensus 753 ~~~~~~~~~~~~~~~ihhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~a 832 (1361)
..+. +-++-|++.++|+..-||+.+. .-.=..++..--..|++++++|+..
T Consensus 228 ~~d~------------------------~i~~aa~~ClvkIm~LyY~~m~-----~yM~~alfaitl~amks~~deValQ 278 (859)
T KOG1241|consen 228 SPDE------------------------EIQVAAFQCLVKIMSLYYEFME-----PYMEQALFAITLAAMKSDNDEVALQ 278 (859)
T ss_pred CCcH------------------------HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCcHHHHHH
Q ss_pred HHHHHHHH
Q 000670 833 AINCLQTT 840 (1361)
Q Consensus 833 ~~~sL~~l 840 (1361)
+++.-.++
T Consensus 279 aiEFWsti 286 (859)
T KOG1241|consen 279 AIEFWSTI 286 (859)
T ss_pred HHHHHHHH
No 57
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=21.65 E-value=2.8e+02 Score=27.33 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCCccCChHHHHHHHHHhhcccchhHHHHHHHHHHHHHhccCCCCChhhHHHHHHHHHH
Q 000670 523 TQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGA 602 (1361)
Q Consensus 523 ~~~~eIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~dfL~~Lp~~~~~~lI~tL~~ 602 (1361)
.....-|.+.+.++..++.-.|.++.+.=+-|...|.++-. .+++-..||+|-... +..|+.+.+..+++....
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~--~~~l~~~al~~W~~f----i~~L~~~~l~~ll~~~~~ 99 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALE--IPELREEALSCWNCF----IKTLDEEDLGPLLDQIFA 99 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC--ChhhHHHHHHHHHHH----HHHCCHHHHHHHHHHHHH
Confidence 55668899999999999999999999999999999998866 446888888887644 456777888888777665
Q ss_pred HHh
Q 000670 603 YSS 605 (1361)
Q Consensus 603 F~~ 605 (1361)
..-
T Consensus 100 ~l~ 102 (107)
T PF08064_consen 100 ILL 102 (107)
T ss_pred HHH
Confidence 443
No 58
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=21.53 E-value=9e+02 Score=30.13 Aligned_cols=113 Identities=22% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCCCCCcc
Q 000670 684 AVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKA 763 (1361)
Q Consensus 684 ~LL~~L~~L~~D~R~EVRn~AiqTLfril~s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~~~~~~~~~~~~ 763 (1361)
.+...|..+..++|.+=|++|++-|..++. -+.|+- |+.+|.++|.-+|+.+........++
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~--e~sfsv--Weq~f~~iL~~l~EvL~d~~~~~~k~-------------- 348 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLC--EGSFSV--WEQHFAEILLLLLEVLSDSEDEIIKK-------------- 348 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHH--ccchhH--HHHHHHHHHHHHHHHHccchhhHHHH--------------
Q ss_pred chhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Q 000670 764 VHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTT 840 (1361)
Q Consensus 764 ~~~~ihhsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~a~~~sL~~l 840 (1361)
++|.-+.++..+.=..| |+..=..+-..++..-......+..|+--|+..+
T Consensus 349 ---------------------laLrvL~~ml~~Q~~~l-----~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~l 399 (516)
T KOG2956|consen 349 ---------------------LALRVLREMLTNQPARL-----FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTL 399 (516)
T ss_pred ---------------------HHHHHHHHHHHhchHhh-----hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
No 59
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.29 E-value=5.2e+02 Score=30.63 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHhHHhHHHhhhhhhccCCcccccccccCCCCCccchhhcccccc
Q 000670 695 DERPEVRNSAIRTLFQTLG-SHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRN 773 (1361)
Q Consensus 695 D~R~EVRn~AiqTLfril~-s~g~~Ls~~~W~~~~~~VLFPLL~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~ihhsr~ 773 (1361)
+.-|+.|..-+=.++.++- ..|+.+.+. -..++..|+-|.++=+.+. .
T Consensus 82 ~~~p~~r~~evL~l~~~ii~kl~~~~~~~-v~~I~~~vf~~Tl~MI~~d----------~-------------------- 130 (319)
T PF08767_consen 82 NSVPDAREPEVLSLMATIINKLGELIQPQ-VPQILEAVFECTLPMINKD----------F-------------------- 130 (319)
T ss_dssp HS-GGGS-HHHHHHHHHHHHHHGGGCCCC-HHHHHHHHHHHHHHHHSST----------S--------------------
T ss_pred cCCccccChhHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHhh----------h--------------------
Confidence 3567777776666666554 556655542 3456666666666544210 0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhcC
Q 000670 774 TAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHST 846 (1361)
Q Consensus 774 ~~~k~W~ET~vlaL~gl~~lf~~~~~~L~~~~~F~~~W~~lL~~l~~~~~~~~~els~a~~~sL~~lL~~~~~ 846 (1361)
.+.-|-++--.+.+..+...+|+.+..++ .+.+..+++.+...++....+++..+++.+.+++.....
T Consensus 131 ---~~yPe~r~~ff~LL~~i~~~~f~~l~~lp--~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 131 ---EEYPEHRVNFFKLLRAINEHCFPALLQLP--PEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp ---SSSHHHHHHHHHHHHHHHHHHTHHHHHS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhChHHHHHHHHHHHHHHHHhHHHHHcCC--HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 11224555555666666666777665553 245677899999999999999999999999999976554
No 60
>PF01133 ER: Enhancer of rudimentary; InterPro: IPR000781 The Drosophila protein 'enhancer of rudimentary' (gene (e(r)) is a small protein of 104 residues whose function is not yet clear. From an evolutionary point of view, it is highly conserved [] and has been found to exist in probably all multicellular eukaryotic organisms. It has been proposed that this protein plays a role in the cell cycle.; GO: 0007049 cell cycle; PDB: 1W9G_A 2NML_A 1WWQ_A 1WZ7_B.
Probab=20.71 E-value=45 Score=32.49 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=31.1
Q ss_pred hhhhHH--HHHHHHHHHHHHHHHhhhccccc-ccchHHHHHHHHHHHHHHH
Q 000670 775 AQKQWD--ETLVLVLGGIARLLRSFFPFLAN-LSNFWTGWESLLHFVKNSI 822 (1361)
Q Consensus 775 ~~k~W~--ET~vlaL~gl~~lf~~~~~~L~~-~~~F~~~W~~lL~~l~~~~ 822 (1361)
+..-|. ||...++.|++++|-.++..... ...-.---..|.+|++.+.
T Consensus 15 ~sRTy~DyeSv~~cmegIC~~YE~~LK~~nP~~~~ItYdIs~Lf~fID~l~ 65 (102)
T PF01133_consen 15 ESRTYSDYESVNECMEGICKIYEEHLKRKNPNSPSITYDISDLFDFIDSLA 65 (102)
T ss_dssp CC-EEEEESSHHHHHHHHHHHHHHHHHHHSTT-SS----HHHHHHHHHHSS
T ss_pred CcceeechhhHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHhhhh
Confidence 334554 89999999999999999876532 2222223467788887753
Done!