Query 000670
Match_columns 1361
No_of_seqs 261 out of 632
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 17:26:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000670.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_441-444//hhsearch_pdb/000670hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 1.0 1 1 36.6 21.3 59 523-583 59-117 (588)
2 1u6g_C TIP120 protein, CAND1; 1.0 1 1 36.3 21.9 299 449-845 376-682 (1230)
3 2qk2_A LP04448P; mini spindles 1.0 1 1 35.6 18.1 60 523-582 68-127 (242)
4 1ibr_B P95, importin beta-1 su 1.0 1 1 35.2 20.5 160 443-627 124-290 (462)
5 1b3u_A Protein (protein phosph 1.0 1 1 35.0 22.0 19 525-543 100-118 (588)
6 1qgr_A Protein (importin beta 1.0 1 1 34.9 27.3 13 1273-1285 860-872 (876)
7 2bpt_A Importin beta-1 subunit 1.0 1 1 33.2 28.4 162 444-627 131-297 (861)
8 2bpt_A Importin beta-1 subunit 1.0 1 1 32.7 34.6 30 1319-1348 825-857 (861)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 31.3 29.2 33 443-475 355-387 (852)
10 1ibr_B P95, importin beta-1 su 1.0 1 1 31.1 17.5 16 697-712 187-202 (462)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=36.59 Aligned_cols=59 Identities=20% Similarity=0.130 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 8737899999999999997049875678289999997722036346799999999999940
Q 000670 523 TQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMND 583 (1361)
Q Consensus 523 ~~~~eIr~~iL~~L~~iL~~~g~~L~sGW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~sD 583 (1361)
..+.+||..+.++|..+.+..|.. .-|..++.+|.....+.+...-..+.+++..++..
T Consensus 59 d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~ 117 (588)
T 1b3u_A 59 YDEDEVLLALAEQLGTFTTLVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 117 (588)
T ss_dssp CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 785899999999997787605859--89999899999987476079999999999999997
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=36.33 Aligned_cols=299 Identities=12% Similarity=0.113 Sum_probs=131.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHCCHHHHHCCCCC
Q ss_conf 999999861899779999999999999998401000030000279961232000114688999---72109998503873
Q 000670 449 VGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECA---VISPLRVLYFSTQS 525 (1361)
Q Consensus 449 ~~hli~v~~~~n~~lR~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~---ll~pl~~L~~~~~~ 525 (1361)
...++....+++..+|.-|+.++..++...-...... .. .....+.+.....++.. ++..+... -...+
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~l~~ll~~l~~~-l~~~~ 447 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL-----CD--PDAMEQGETPLTMLQSQVPNIVKALHKQ-MKEKS 447 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-------------------CCCHHHHHHHHTTHHHHHHHHH-TTCSC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-----CC--CCCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCC
T ss_conf 8999987179865799999999999999724243434-----67--5201356455999998746999999998-61377
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 789999999999999704987567828999999772203634--679999999999994039988831499999999997
Q 000670 526 TDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEK--DLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAY 603 (1361)
Q Consensus 526 ~eIr~~iL~~L~~iL~~~g~~L~sGW~~If~IL~~v~~~~~~--~lv~~aF~~LqlI~sDfL~~Lp~~~~~~lIdtL~~F 603 (1361)
..+|...+..+..++..++..+..-++.++..+.....++.. .....+...+..++..+-...-...+..++..+...
T Consensus 448 ~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~ 527 (1230)
T 1u6g_C 448 VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVAC 527 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 87999999999999997611057779999999999974878851689999999999998389887886799999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 70688744158799999997999870457895146653210367886456750234421034444567777211243399
Q 000670 604 SSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLF 683 (1361)
Q Consensus 604 ~~Q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~ 683 (1361)
. ++.+..+...+++.+-.+...+... . . . ... ....+.-
T Consensus 528 l-~d~~~~v~~~al~~l~~l~~~~~~~---~-~-----------~----------------------~~~---~~~~~~~ 566 (1230)
T 1u6g_C 528 V-GDPFYKITSEALLVTQQLVKVIRPL---D-Q-----------P----------------------SSF---DATPYIK 566 (1230)
T ss_dssp H-TCSSHHHHHHHHHHHHHHHHHHCCS---S-S-----------C----------------------CCC---CCHHHHH
T ss_pred H-CCCCHHHHHHHHHHHHHHHHHHCCC---C-C-----------C----------------------CCC---CHHHHHH
T ss_conf 7-1424689999999999999871675---5-5-----------6----------------------532---3278999
Q ss_pred HHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999997620--4897899999999999999860499998799999999589679-863332014771000123347778
Q 000670 684 AVFSLLKKLG--ADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPML-DCASHMAATSSKDEWQGKELGTRG 760 (1361)
Q Consensus 684 ~LL~~L~~L~--~D~R~EVRn~AiqTLfril~s~G~~ls~~~W~~i~~~VlfPLl-d~i~~~~~~~s~~~~~~~~~~~~~ 760 (1361)
.++..+.... .|..++||..|+.++-.+...-|..+.+ .+..++ |++ +.+...
T Consensus 567 ~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~-~~~~~l-----~~L~~~l~~e------------------ 622 (1230)
T 1u6g_C 567 DLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGS-DLPNTL-----QIFLERLKNE------------------ 622 (1230)
T ss_dssp HHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCT-HHHHHH-----HHHHHHTTSS------------------
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHH-----HHHHHHHCCC------------------
T ss_conf 9999999987326998899999999999999982703244-388999-----9999884453------------------
Q ss_pred CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 86411111456632235399999999999999999530011265634999999999999998099057999999999999
Q 000670 761 GKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTT 840 (1361)
Q Consensus 761 ~~~~~~lv~hsr~~~~k~W~ET~vlaL~gl~~lf~~~~~~l~~~~~F~~~W~~LL~~l~~~~~~~~~eis~a~~~sL~~l 840 (1361)
.++.-++..+..+...-+ ..++......++..+.+.+......+-..+..++..+
T Consensus 623 --------------------~~r~~~~~al~~i~~~~~-----~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l 677 (1230)
T 1u6g_C 623 --------------------ITRLTTVKALTLIAGSPL-----KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 677 (1230)
T ss_dssp --------------------SHHHHHHHHHHHHTTCSS-----CCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf --------------------059999999999981856-----4436888999999999999867888999999999999
Q ss_pred HHHHC
Q ss_conf 85215
Q 000670 841 VLSHS 845 (1361)
Q Consensus 841 L~~~~ 845 (1361)
+....
T Consensus 678 ~~~~~ 682 (1230)
T 1u6g_C 678 IKNYS 682 (1230)
T ss_dssp HHHCC
T ss_pred HHCCC
T ss_conf 96043
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=35.55 Aligned_cols=60 Identities=10% Similarity=0.007 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 873789999999999999704987567828999999772203634679999999999994
Q 000670 523 TQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMN 582 (1361)
Q Consensus 523 ~~~~eIr~~iL~~L~~iL~~~g~~L~sGW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~s 582 (1361)
..+..|+...+.++..+....|..+..-+..++..|-....++....-..+..++.-++.
T Consensus 68 d~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 898999999999999999998661798999999999999768988999999999999997
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=35.15 Aligned_cols=160 Identities=12% Similarity=0.130 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 13999999999986189--9779999999999999998401000030000279961232000114688999721099985
Q 000670 443 PLWDQVVGHFLELADNS--NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 520 (1361)
Q Consensus 443 ~iW~~i~~hli~v~~~~--n~~lR~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 520 (1361)
.-|+-+...++....++ +..+|..|..+|..++...-.. . ....++ .++..+....
T Consensus 124 ~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~-~--------------------~~~~~~-~ll~~l~~~l 181 (462)
T 1ibr_B 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE-Q--------------------LQDKSN-EILTAIIQGM 181 (462)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGG-G--------------------TGGGHH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCH-H--------------------HHHHHH-HHHHHHHHHH
T ss_conf 02699999999986267887899999999999999818715-3--------------------476799-9999999986
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH-H
Q ss_conf 038-7378999999999999970498756782---8999999772203634679999999999994039988831499-9
Q 000670 521 FST-QSTDVRAGTLKILLHVLERCGEKLHYSW---PSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIH-E 595 (1361)
Q Consensus 521 ~~~-~~~eIr~~iL~~L~~iL~~~g~~L~sGW---~~If~IL~~v~~~~~~~lv~~aF~~LqlI~sDfL~~Lp~~~~~-~ 595 (1361)
... .+.+||...++++..+++-..+.. ..| ..++.++.......+.+.-..+++++..++..+...+. +.+. .
T Consensus 182 ~~~~~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-~~~~~~ 259 (462)
T 1ibr_B 182 RKEEPSNNVKLAATNALLNSLEFTKANF-DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME-TYMGPA 259 (462)
T ss_dssp STTCCCHHHHHHHHHHHHHHTTTTHHHH-TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT-TTTTTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 7999989999999999999999999843-23678989999999853799789999999999999999899999-888889
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999997706887441587999999979998
Q 000670 596 CVDVTGAYSSQKTELNISLTAVGLLWTTTDFI 627 (1361)
Q Consensus 596 lIdtL~~F~~Q~~dlNISLtAi~llW~isD~L 627 (1361)
++..+..... +.+.++...+++++-.+++..
T Consensus 260 l~~~~~~~~~-~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 260 LFAITIEAMK-SDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp HHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999982-886099999999999999988
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=35.02 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHHHHHC
Q ss_conf 3789999999999999704
Q 000670 525 STDVRAGTLKILLHVLERC 543 (1361)
Q Consensus 525 ~~eIr~~iL~~L~~iL~~~ 543 (1361)
+.+||+...+++.++.+..
T Consensus 100 ~~~vR~~a~~~L~~l~~~~ 118 (588)
T 1b3u_A 100 ETVVRDKAVESLRAISHEH 118 (588)
T ss_dssp CHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 0799999999999999979
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=34.87 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999998740
Q 000670 1273 EEIIFILQELARL 1285 (1361)
Q Consensus 1273 ~El~~vL~~l~~L 1285 (1361)
..-.|.+..+.+|
T Consensus 860 ~~a~~a~~~~~~~ 872 (876)
T 1qgr_A 860 TLARWATKELRKL 872 (876)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999975
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=33.19 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCC
Q ss_conf 3999999999986189-977999999999999999840100003000027996123200011468899972109998503
Q 000670 444 LWDQVVGHFLELADNS-NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFS 522 (1361)
Q Consensus 444 iW~~i~~hli~v~~~~-n~~lR~~Avd~L~~li~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~ 522 (1361)
-|+-+...+.....++ +..+|..|...|..++... ..+ . + ......+ .++..+......
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~-~~~---------------~-~--~~~~~~~-~ll~~l~~~l~~ 190 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA-DPQ---------------S-Q--ALVSSSN-NILIAIVQGAQS 190 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS-STT---------------S-S--TTGGGHH-HHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CHH---------------H-H--HHHHHHH-HHHHHHHHHHCC
T ss_conf 549999999998726897899999999999999727-843---------------5-6--7898899-999999984157
Q ss_pred C-CCHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHH
Q ss_conf 8-7378999999999999970498756--7828999999772203634679999999999994039988831499-9999
Q 000670 523 T-QSTDVRAGTLKILLHVLERCGEKLH--YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIH-ECVD 598 (1361)
Q Consensus 523 ~-~~~eIr~~iL~~L~~iL~~~g~~L~--sGW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~sDfL~~Lp~~~~~-~lId 598 (1361)
. .+.+||..+++++..+++..++.+. ..|..++..+.......+...-..+++++..++..+...+. +.+. .++.
T Consensus 191 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~~l~~ 269 (861)
T 2bpt_A 191 TETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK-PYMEQALYA 269 (861)
T ss_dssp TCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCH-HHHHHTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 9998789999999999999999987067668999999999986599889999999999999999889999-988999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99997706887441587999999979998
Q 000670 599 VTGAYSSQKTELNISLTAVGLLWTTTDFI 627 (1361)
Q Consensus 599 tL~~F~~Q~~dlNISLtAi~llW~isD~L 627 (1361)
.+.... ++.+..+...++.++..+.+..
T Consensus 270 ~~~~~~-~~~~~~vr~~a~~~l~~l~~~~ 297 (861)
T 2bpt_A 270 LTIATM-KSPNDKVASMTVEFWSTICEEE 297 (861)
T ss_dssp HHHHHT-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999987-3772789999999999999878
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=32.65 Aligned_cols=30 Identities=0% Similarity=-0.125 Sum_probs=14.5
Q ss_pred HHHHCHHHHEE---CCHHHHHHHHHHHHHHHHH
Q ss_conf 22110220111---3504899999999999864
Q 000670 1319 VLFPSFCELVI---SREARVRELVQVLLRLITK 1348 (1361)
Q Consensus 1319 ~lyP~l~~~~~---~~~~~v~~ll~~~l~~vg~ 1348 (1361)
.++|.|+++.- +.+.+++...+=+++.+.+
T Consensus 825 ~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 825 DWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 799999998853557887789999999999998
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=31.34 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 139999999999861899779999999999999
Q 000670 443 PLWDQVVGHFLELADNSNQHLRNIALDALDQSI 475 (1361)
Q Consensus 443 ~iW~~i~~hli~v~~~~n~~lR~~Avd~L~~li 475 (1361)
.+-+.+..++.....+++..+|.-|+.+|..++
T Consensus 355 ~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~ 387 (852)
T 4fdd_A 355 ELLPHILPLLKELLFHHEWVVKESGILVLGAIA 387 (852)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 789999999999855998899999999999998
No 10
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=31.07 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 7899999999999999
Q 000670 697 RPEVRNSAIRTLFQTL 712 (1361)
Q Consensus 697 R~EVRn~AiqTLfril 712 (1361)
.++||..|+.++..++
T Consensus 187 ~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 187 SNNVKLAATNALLNSL 202 (462)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 8999999999999999
Done!