Query 000671
Match_columns 1361
No_of_seqs 715 out of 5059
Neff 7.5
Searched_HMMs 46136
Date Mon Apr 1 21:43:46 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 8E-247 2E-251 2332.9 132.5 1152 197-1359 122-1285(1381)
2 PLN03130 ABC transporter C fam 100.0 3E-190 7E-195 1917.2 159.4 1320 22-1359 29-1384(1622)
3 PLN03232 ABC transporter C fam 100.0 1E-185 3E-190 1874.7 159.5 1147 194-1359 223-1381(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 1E-184 2E-189 1868.2 161.0 1331 18-1359 20-1431(1522)
5 TIGR01271 CFTR_protein cystic 100.0 6E-174 1E-178 1757.2 139.3 1150 197-1359 3-1363(1490)
6 PTZ00243 ABC transporter; Prov 100.0 1E-165 3E-170 1674.6 140.3 1160 197-1359 59-1455(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 2E-121 5E-126 1147.1 103.2 1064 267-1359 15-1136(1228)
8 PTZ00265 multidrug resistance 100.0 2E-110 5E-115 1126.1 127.0 1076 274-1359 57-1368(1466)
9 PRK11174 cysteine/glutathione 100.0 1.6E-69 3.4E-74 685.9 73.9 542 269-819 14-584 (588)
10 KOG0058 Peptide exporter, ABC 100.0 7.2E-69 1.6E-73 641.2 64.5 538 270-820 140-705 (716)
11 COG2274 SunT ABC-type bacterio 100.0 3.5E-65 7.7E-70 636.8 72.2 545 267-817 144-706 (709)
12 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.8E-65 8.3E-70 655.7 74.7 542 267-817 126-683 (686)
13 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.9E-65 6.2E-70 659.8 73.3 541 270-816 147-709 (710)
14 TIGR00958 3a01208 Conjugate Tr 100.0 4E-65 8.6E-70 655.0 72.9 535 272-815 156-710 (711)
15 TIGR03375 type_I_sec_LssB type 100.0 2.9E-64 6.2E-69 648.4 74.2 534 268-808 138-689 (694)
16 PRK11176 lipid transporter ATP 100.0 2.5E-63 5.4E-68 629.0 73.8 542 271-818 19-578 (582)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 2.6E-63 5.7E-68 640.9 73.2 536 271-816 150-706 (708)
18 TIGR02203 MsbA_lipidA lipid A 100.0 7.9E-63 1.7E-67 623.6 74.0 542 271-817 8-566 (571)
19 KOG0055 Multidrug/pheromone ex 100.0 1.7E-63 3.7E-68 625.7 64.9 539 269-819 653-1225(1228)
20 PRK10790 putative multidrug tr 100.0 3.8E-62 8.2E-67 618.7 75.2 538 271-819 17-575 (592)
21 TIGR02204 MsbA_rel ABC transpo 100.0 5.7E-62 1.2E-66 616.1 73.8 541 270-817 11-573 (576)
22 PRK11160 cysteine/glutathione 100.0 1.5E-61 3.2E-66 608.8 73.3 540 271-817 10-572 (574)
23 PRK13657 cyclic beta-1,2-gluca 100.0 4.2E-61 9.2E-66 608.3 74.9 535 272-819 14-570 (588)
24 PRK10789 putative multidrug tr 100.0 2.9E-61 6.2E-66 606.1 71.3 526 287-819 5-550 (569)
25 KOG0058 Peptide exporter, ABC 100.0 2.3E-63 5.1E-68 594.0 46.6 467 886-1359 135-614 (716)
26 TIGR01846 type_I_sec_HlyB type 100.0 1.2E-60 2.6E-65 614.3 74.8 543 270-817 132-690 (694)
27 TIGR02868 CydC thiol reductant 100.0 4.1E-61 8.9E-66 601.6 68.6 502 272-779 8-529 (529)
28 COG1132 MdlB ABC-type multidru 100.0 1.2E-60 2.5E-65 601.8 72.7 533 275-819 13-564 (567)
29 TIGR01842 type_I_sec_PrtD type 100.0 1E-60 2.2E-65 599.0 70.5 519 275-807 4-542 (544)
30 TIGR01192 chvA glucan exporter 100.0 1.9E-59 4.1E-64 590.5 74.9 535 272-819 14-570 (585)
31 COG4988 CydD ABC-type transpor 100.0 1.3E-59 2.8E-64 553.3 67.5 527 283-820 6-556 (559)
32 TIGR02857 CydD thiol reductant 100.0 1E-59 2.2E-64 589.1 68.7 505 276-791 2-529 (529)
33 PTZ00265 multidrug resistance 100.0 2.4E-59 5.3E-64 631.7 73.6 543 273-818 821-1464(1466)
34 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-57 2.4E-62 622.7 74.6 471 344-818 1031-1519(1522)
35 KOG0057 Mitochondrial Fe/S clu 100.0 9E-58 1.9E-62 527.6 58.1 520 289-817 42-584 (591)
36 PLN03130 ABC transporter C fam 100.0 6.7E-57 1.5E-61 613.6 74.6 471 344-819 979-1474(1622)
37 PLN03232 ABC transporter C fam 100.0 2.6E-56 5.7E-61 608.5 72.8 471 344-819 976-1471(1495)
38 COG4987 CydC ABC-type transpor 100.0 7.4E-56 1.6E-60 511.7 62.4 473 340-816 80-570 (573)
39 PTZ00243 ABC transporter; Prov 100.0 1.9E-55 4E-60 598.9 74.2 466 352-819 1032-1546(1560)
40 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.3E-54 7.2E-59 540.2 65.1 510 271-799 11-551 (555)
41 COG2274 SunT ABC-type bacterio 100.0 2.3E-55 5E-60 548.8 52.5 468 886-1359 142-619 (709)
42 KOG0056 Heavy metal exporter H 100.0 4E-56 8.7E-61 499.5 39.0 456 355-819 296-774 (790)
43 TIGR01271 CFTR_protein cystic 100.0 2.2E-53 4.9E-58 578.7 73.1 471 344-820 951-1453(1490)
44 COG4618 ArpD ABC-type protease 100.0 1.6E-53 3.4E-58 487.2 55.9 527 267-807 13-560 (580)
45 TIGR02868 CydC thiol reductant 100.0 2.9E-54 6.4E-59 539.8 53.2 413 944-1359 62-480 (529)
46 PRK10522 multidrug transporter 100.0 1.8E-52 4E-57 524.4 64.3 506 267-799 3-530 (547)
47 TIGR00958 3a01208 Conjugate Tr 100.0 1.4E-53 3.1E-58 548.1 52.7 468 886-1359 149-627 (711)
48 COG1132 MdlB ABC-type multidru 100.0 1.7E-53 3.7E-58 536.7 52.1 448 906-1359 20-475 (567)
49 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.5E-52 3.3E-57 539.0 54.6 447 907-1359 143-598 (686)
50 PRK11174 cysteine/glutathione 100.0 2.9E-52 6.3E-57 528.3 53.4 466 886-1359 10-495 (588)
51 TIGR01193 bacteriocin_ABC ABC- 100.0 2E-52 4.3E-57 539.8 52.1 468 885-1359 143-621 (708)
52 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4.1E-52 8.9E-57 537.4 52.9 472 885-1359 141-625 (710)
53 TIGR03375 type_I_sec_LssB type 100.0 2.6E-51 5.5E-56 528.3 54.2 467 886-1359 135-611 (694)
54 PRK10790 putative multidrug tr 100.0 3.7E-51 8E-56 518.4 53.4 447 906-1359 29-486 (592)
55 PRK11160 cysteine/glutathione 100.0 6.9E-51 1.5E-55 512.2 54.8 414 941-1359 66-485 (574)
56 TIGR02857 CydD thiol reductant 100.0 1.3E-50 2.8E-55 507.0 54.0 447 908-1359 11-468 (529)
57 TIGR02203 MsbA_lipidA lipid A 100.0 4.9E-50 1.1E-54 507.1 54.2 449 906-1359 20-479 (571)
58 TIGR01846 type_I_sec_HlyB type 100.0 4.4E-50 9.5E-55 516.5 54.1 468 885-1359 126-603 (694)
59 PRK11176 lipid transporter ATP 100.0 4.9E-50 1.1E-54 507.7 53.4 414 941-1359 71-490 (582)
60 TIGR00954 3a01203 Peroxysomal 100.0 5.9E-49 1.3E-53 499.2 61.3 504 278-793 97-653 (659)
61 TIGR02204 MsbA_rel ABC transpo 100.0 6.2E-49 1.3E-53 497.3 54.4 469 887-1359 7-486 (576)
62 KOG0054 Multidrug resistance-a 100.0 3.5E-48 7.5E-53 499.8 61.1 464 344-817 884-1373(1381)
63 COG5265 ATM1 ABC-type transpor 100.0 1.7E-49 3.7E-54 444.7 38.1 411 400-816 65-495 (497)
64 TIGR01192 chvA glucan exporter 100.0 7E-48 1.5E-52 485.6 54.3 465 888-1359 9-481 (585)
65 PRK10789 putative multidrug tr 100.0 3.4E-48 7.4E-53 487.7 50.1 417 938-1359 39-461 (569)
66 PRK13657 cyclic beta-1,2-gluca 100.0 1.1E-47 2.4E-52 485.9 54.6 452 904-1359 23-481 (588)
67 KOG0056 Heavy metal exporter H 100.0 1.4E-49 3E-54 447.0 29.3 412 938-1360 256-685 (790)
68 TIGR01194 cyc_pep_trnsptr cycl 100.0 8.1E-47 1.8E-51 473.5 53.4 463 887-1359 6-480 (555)
69 TIGR00956 3a01205 Pleiotropic 100.0 5.4E-48 1.2E-52 521.7 45.0 190 610-806 74-299 (1394)
70 PRK09700 D-allose transporter 100.0 1E-47 2.2E-52 478.0 34.8 195 594-802 5-229 (510)
71 PRK10261 glutathione transport 100.0 9.8E-48 2.1E-52 486.2 34.8 206 593-806 11-257 (623)
72 COG1123 ATPase components of v 100.0 1.2E-47 2.6E-52 454.9 33.0 206 594-808 5-245 (539)
73 TIGR01842 type_I_sec_PrtD type 100.0 1.2E-45 2.5E-50 463.0 52.2 439 909-1359 15-464 (544)
74 COG4988 CydD ABC-type transpor 100.0 1.7E-45 3.7E-50 434.0 49.9 418 936-1359 41-466 (559)
75 PRK13549 xylose transporter AT 100.0 2.1E-47 4.6E-52 474.3 35.3 194 594-801 5-226 (506)
76 COG4987 CydC ABC-type transpor 100.0 1.9E-45 4E-50 425.6 46.3 410 943-1358 66-483 (573)
77 TIGR02633 xylG D-xylose ABC tr 100.0 4.5E-47 9.7E-52 471.3 34.7 192 595-799 2-222 (500)
78 PRK15134 microcin C ABC transp 100.0 2.6E-47 5.6E-52 476.0 32.2 204 594-805 5-244 (529)
79 PRK10762 D-ribose transporter 100.0 4.9E-47 1.1E-51 470.5 33.6 193 594-800 4-223 (501)
80 PRK15439 autoinducer 2 ABC tra 100.0 2E-46 4.4E-51 465.3 36.1 198 594-805 11-227 (510)
81 PRK10938 putative molybdenum t 100.0 1.5E-46 3.2E-51 465.5 33.8 197 594-805 3-222 (490)
82 TIGR01257 rim_protein retinal- 100.0 7.4E-44 1.6E-48 478.4 61.8 202 593-807 927-1149(2272)
83 PRK15064 ABC transporter ATP-b 100.0 6.4E-46 1.4E-50 463.6 39.2 197 595-807 2-242 (530)
84 TIGR03269 met_CoM_red_A2 methy 100.0 1.7E-46 3.8E-51 468.0 33.5 193 595-801 1-252 (520)
85 PRK11288 araG L-arabinose tran 100.0 4.3E-46 9.4E-51 462.1 34.6 191 594-798 4-220 (501)
86 PRK11819 putative ABC transpor 100.0 1.9E-45 4.2E-50 460.7 40.1 206 594-807 6-250 (556)
87 PRK10522 multidrug transporter 100.0 4.7E-44 1E-48 448.5 51.6 397 946-1359 59-459 (547)
88 PRK10982 galactose/methyl gala 100.0 9.6E-46 2.1E-50 458.1 35.7 190 598-801 2-217 (491)
89 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.8E-45 1E-49 457.3 39.8 206 594-807 4-248 (552)
90 KOG0057 Mitochondrial Fe/S clu 100.0 5.5E-44 1.2E-48 413.4 43.2 416 936-1359 75-497 (591)
91 PRK14257 phosphate ABC transpo 100.0 3.6E-45 7.8E-50 426.5 25.7 263 528-808 23-314 (329)
92 PRK10636 putative ABC transpor 100.0 6.3E-43 1.4E-47 442.6 41.3 196 595-806 2-235 (638)
93 COG1126 GlnQ ABC-type polar am 100.0 1.9E-44 4.2E-49 374.8 20.9 202 594-809 2-227 (240)
94 PRK11147 ABC transporter ATPas 100.0 2E-42 4.3E-47 439.3 38.8 204 594-807 3-243 (635)
95 COG5265 ATM1 ABC-type transpor 100.0 1E-42 2.3E-47 390.3 27.5 401 956-1360 3-410 (497)
96 PLN03140 ABC transporter G fam 100.0 3.6E-41 7.8E-46 453.2 45.4 197 610-806 178-426 (1470)
97 COG4172 ABC-type uncharacteriz 100.0 2.1E-41 4.4E-46 376.6 30.2 206 593-806 5-246 (534)
98 PLN03073 ABC transporter F fam 100.0 8.3E-41 1.8E-45 423.8 38.5 204 593-806 176-430 (718)
99 COG0488 Uup ATPase components 100.0 1.3E-40 2.8E-45 404.1 37.4 206 594-808 3-241 (530)
100 TIGR00954 3a01203 Peroxysomal 100.0 5.9E-40 1.3E-44 417.0 43.9 459 887-1359 80-592 (659)
101 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.4E-41 7.3E-46 383.4 27.3 222 594-818 2-236 (275)
102 COG1135 AbcC ABC-type metal io 100.0 7E-42 1.5E-46 373.0 20.6 204 595-809 2-233 (339)
103 COG1125 OpuBA ABC-type proline 100.0 6.4E-42 1.4E-46 361.9 18.2 203 595-810 2-228 (309)
104 COG1116 TauB ABC-type nitrate/ 100.0 1.4E-41 3.1E-46 365.3 20.7 190 594-797 3-212 (248)
105 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.9E-41 1.7E-45 365.1 23.7 201 593-808 3-228 (254)
106 COG1120 FepC ABC-type cobalami 100.0 9E-41 1.9E-45 366.8 21.5 201 594-808 2-229 (258)
107 COG1117 PstB ABC-type phosphat 100.0 6.2E-41 1.4E-45 346.4 17.0 206 593-809 6-239 (253)
108 COG3839 MalK ABC-type sugar tr 100.0 2.4E-40 5.2E-45 376.8 22.4 203 594-810 3-226 (338)
109 PRK13409 putative ATPase RIL; 100.0 1E-39 2.2E-44 407.4 27.4 179 599-794 78-287 (590)
110 COG3842 PotA ABC-type spermidi 100.0 2.8E-40 6.1E-45 378.2 20.0 204 593-810 4-229 (352)
111 COG1127 Ttg2A ABC-type transpo 100.0 8.8E-40 1.9E-44 345.3 21.4 205 592-811 6-239 (263)
112 COG1118 CysA ABC-type sulfate/ 100.0 5.4E-40 1.2E-44 357.1 19.5 202 594-809 2-229 (345)
113 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.1E-38 2.3E-43 364.3 30.6 220 589-813 34-253 (282)
114 COG1136 SalX ABC-type antimicr 100.0 2.5E-39 5.4E-44 348.7 23.7 193 595-797 2-221 (226)
115 cd03252 ABCC_Hemolysin The ABC 100.0 9.5E-39 2.1E-43 358.7 27.4 219 595-815 1-233 (237)
116 cd03250 ABCC_MRP_domain1 Domai 100.0 5.8E-39 1.2E-43 352.0 24.8 201 595-795 1-204 (204)
117 COG3638 ABC-type phosphate/pho 100.0 2.9E-39 6.3E-44 340.5 18.8 200 594-806 3-236 (258)
118 COG3840 ThiQ ABC-type thiamine 100.0 5.7E-39 1.2E-43 323.1 18.7 199 595-809 2-221 (231)
119 COG1122 CbiO ABC-type cobalt t 100.0 1E-38 2.2E-43 351.3 22.4 202 594-808 3-229 (235)
120 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.6E-38 7.7E-43 354.2 26.4 215 595-810 1-229 (238)
121 COG3845 ABC-type uncharacteriz 100.0 1.8E-37 3.8E-42 357.6 32.3 192 593-798 3-220 (501)
122 COG1124 DppF ABC-type dipeptid 100.0 2.6E-38 5.6E-43 336.3 22.9 205 594-808 3-232 (252)
123 cd03254 ABCC_Glucan_exporter_l 100.0 5.2E-38 1.1E-42 350.8 26.2 211 594-807 2-226 (229)
124 cd03288 ABCC_SUR2 The SUR doma 100.0 9.3E-38 2E-42 354.5 28.0 222 592-815 17-252 (257)
125 cd03251 ABCC_MsbA MsbA is an e 100.0 7.3E-38 1.6E-42 350.9 26.7 214 595-810 1-228 (234)
126 cd03253 ABCC_ATM1_transporter 100.0 9.7E-38 2.1E-42 350.3 27.4 215 595-812 1-229 (236)
127 TIGR02314 ABC_MetN D-methionin 100.0 2.8E-38 6E-43 369.1 23.5 203 595-808 2-231 (343)
128 PRK11650 ugpC glycerol-3-phosp 100.0 4.8E-38 1E-42 370.2 25.3 203 594-809 3-226 (356)
129 cd03244 ABCC_MRP_domain2 Domai 100.0 1.2E-37 2.6E-42 346.0 25.9 206 594-801 2-220 (221)
130 COG1129 MglA ABC-type sugar tr 100.0 5.8E-37 1.3E-41 362.0 32.9 193 593-799 7-226 (500)
131 COG2884 FtsE Predicted ATPase 100.0 3.5E-38 7.5E-43 320.6 19.2 193 595-800 2-219 (223)
132 PRK13631 cbiO cobalt transport 100.0 1.4E-37 3E-42 361.8 25.6 208 591-808 18-266 (320)
133 PRK11432 fbpC ferric transport 100.0 1.5E-37 3.2E-42 365.0 25.0 203 593-809 5-228 (351)
134 cd03261 ABC_Org_Solvent_Resist 100.0 1.3E-37 2.9E-42 348.9 23.3 200 595-808 1-227 (235)
135 cd03245 ABCC_bacteriocin_expor 100.0 3E-37 6.5E-42 342.6 25.8 205 594-800 2-220 (220)
136 TIGR01186 proV glycine betaine 100.0 9.8E-38 2.1E-42 366.2 21.7 189 610-809 6-221 (363)
137 COG4618 ArpD ABC-type protease 100.0 1.8E-35 4E-40 339.3 39.6 396 942-1359 70-482 (580)
138 PRK13643 cbiO cobalt transport 100.0 2.7E-37 5.8E-42 355.9 24.3 204 595-808 2-234 (288)
139 PRK13650 cbiO cobalt transport 100.0 2.8E-37 6.1E-42 354.3 24.1 204 594-808 4-230 (279)
140 PRK13634 cbiO cobalt transport 100.0 3E-37 6.5E-42 355.8 24.4 204 595-808 3-236 (290)
141 TIGR03265 PhnT2 putative 2-ami 100.0 2.1E-37 4.6E-42 364.3 23.6 202 594-809 4-226 (353)
142 PRK09452 potA putrescine/sperm 100.0 4.3E-37 9.3E-42 363.3 25.2 204 592-809 12-236 (375)
143 PRK13637 cbiO cobalt transport 100.0 3.8E-37 8.3E-42 354.4 24.0 206 594-808 2-235 (287)
144 TIGR03258 PhnT 2-aminoethylpho 100.0 3.6E-37 7.7E-42 362.7 23.5 203 593-809 4-230 (362)
145 cd03296 ABC_CysA_sulfate_impor 100.0 7.1E-37 1.5E-41 343.8 24.5 199 595-807 3-226 (239)
146 PRK10851 sulfate/thiosulfate t 100.0 5.9E-37 1.3E-41 360.6 24.8 201 595-809 3-228 (353)
147 PRK13651 cobalt transporter AT 100.0 7.3E-37 1.6E-41 353.8 24.8 204 595-808 3-255 (305)
148 cd03219 ABC_Mj1267_LivG_branch 100.0 6E-37 1.3E-41 343.9 22.8 199 595-807 1-232 (236)
149 PRK13537 nodulation ABC transp 100.0 7.8E-37 1.7E-41 354.3 24.1 202 593-808 6-228 (306)
150 PRK13646 cbiO cobalt transport 100.0 7.7E-37 1.7E-41 351.9 23.7 205 594-808 2-236 (286)
151 PRK11000 maltose/maltodextrin 100.0 8E-37 1.7E-41 362.3 24.4 202 594-809 3-225 (369)
152 PRK13647 cbiO cobalt transport 100.0 8.9E-37 1.9E-41 349.2 23.8 199 594-805 4-225 (274)
153 cd03290 ABCC_SUR1_N The SUR do 100.0 1.3E-36 2.9E-41 336.8 24.3 198 596-795 2-218 (218)
154 cd03259 ABC_Carb_Solutes_like 100.0 6.7E-37 1.5E-41 338.0 21.5 192 595-800 1-213 (213)
155 cd03226 ABC_cobalt_CbiO_domain 100.0 8.7E-37 1.9E-41 335.0 22.1 188 597-797 2-205 (205)
156 cd03293 ABC_NrtD_SsuB_transpor 100.0 8.5E-37 1.9E-41 338.8 22.2 197 595-802 1-218 (220)
157 PRK11153 metN DL-methionine tr 100.0 1.2E-36 2.6E-41 358.0 24.3 203 595-808 2-231 (343)
158 TIGR00960 3a0501s02 Type II (G 100.0 7.6E-37 1.7E-41 338.3 21.2 190 595-796 2-216 (216)
159 cd03260 ABC_PstB_phosphate_tra 100.0 9.7E-37 2.1E-41 340.1 22.2 197 595-804 1-226 (227)
160 cd03265 ABC_DrrA DrrA is the A 100.0 9.2E-37 2E-41 338.6 21.9 197 595-805 1-219 (220)
161 TIGR02315 ABC_phnC phosphonate 100.0 1.6E-36 3.5E-41 342.0 23.5 198 595-805 2-233 (243)
162 cd03256 ABC_PhnC_transporter A 100.0 1.5E-36 3.2E-41 341.9 23.2 199 595-806 1-233 (241)
163 PRK14250 phosphate ABC transpo 100.0 2.7E-36 5.8E-41 339.3 25.0 202 594-808 3-222 (241)
164 PRK13635 cbiO cobalt transport 100.0 2.7E-36 5.8E-41 346.0 25.4 203 594-808 5-230 (279)
165 cd03268 ABC_BcrA_bacitracin_re 100.0 1.9E-36 4.1E-41 333.2 23.1 192 595-800 1-208 (208)
166 PRK13644 cbiO cobalt transport 100.0 2.6E-36 5.7E-41 345.3 24.7 200 595-807 2-224 (274)
167 PRK11607 potG putrescine trans 100.0 2.2E-36 4.8E-41 357.9 24.8 205 592-810 17-242 (377)
168 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.4E-36 3E-41 336.8 21.4 191 595-796 1-218 (218)
169 cd03258 ABC_MetN_methionine_tr 100.0 2.6E-36 5.6E-41 338.1 23.6 202 595-807 2-230 (233)
170 PRK13641 cbiO cobalt transport 100.0 2.7E-36 5.9E-41 347.5 24.5 204 594-807 2-234 (287)
171 cd03224 ABC_TM1139_LivF_branch 100.0 2.4E-36 5.2E-41 335.8 23.2 198 595-806 1-220 (222)
172 COG4615 PvdE ABC-type sideroph 100.0 1.1E-33 2.4E-38 313.7 43.8 435 342-799 76-529 (546)
173 PRK11629 lolD lipoprotein tran 100.0 2.6E-36 5.7E-41 337.8 23.5 197 594-801 5-228 (233)
174 cd03369 ABCC_NFT1 Domain 2 of 100.0 5E-36 1.1E-40 329.5 25.1 189 593-801 5-206 (207)
175 PRK09536 btuD corrinoid ABC tr 100.0 2.4E-36 5.3E-41 358.6 24.1 201 594-808 3-229 (402)
176 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.7E-36 3.7E-41 346.1 21.9 199 596-808 26-251 (269)
177 cd03266 ABC_NatA_sodium_export 100.0 2.5E-36 5.5E-41 334.7 22.4 195 595-800 2-218 (218)
178 cd03263 ABC_subfamily_A The AB 100.0 3.4E-36 7.4E-41 334.1 23.3 198 595-805 1-219 (220)
179 TIGR01288 nodI ATP-binding ABC 100.0 3.8E-36 8.3E-41 349.0 24.6 201 593-807 3-224 (303)
180 PRK13636 cbiO cobalt transport 100.0 3.6E-36 7.9E-41 345.8 24.2 202 594-808 5-232 (283)
181 PRK13536 nodulation factor exp 100.0 2.8E-36 6E-41 353.1 23.6 202 593-808 40-262 (340)
182 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.7E-36 8.1E-41 337.3 23.6 200 595-808 2-222 (236)
183 PRK14242 phosphate transporter 100.0 3.5E-36 7.6E-41 341.2 23.6 205 593-808 5-238 (253)
184 PRK14269 phosphate ABC transpo 100.0 3.2E-36 6.9E-41 339.9 23.2 204 594-808 2-231 (246)
185 PRK11247 ssuB aliphatic sulfon 100.0 5.2E-36 1.1E-40 338.8 24.9 197 593-803 11-219 (257)
186 COG1131 CcmA ABC-type multidru 100.0 3.7E-36 8.1E-41 345.2 24.1 201 594-807 4-226 (293)
187 cd03248 ABCC_TAP TAP, the Tran 100.0 4.8E-36 1E-40 334.3 24.3 205 591-796 8-226 (226)
188 cd03235 ABC_Metallic_Cations A 100.0 2.5E-36 5.5E-41 333.4 21.8 189 597-800 2-213 (213)
189 cd03218 ABC_YhbG The ABC trans 100.0 3.5E-36 7.5E-41 336.8 22.8 199 595-807 1-222 (232)
190 cd03301 ABC_MalK_N The N-termi 100.0 3E-36 6.5E-41 332.9 21.7 192 595-800 1-213 (213)
191 PRK14273 phosphate ABC transpo 100.0 5.8E-36 1.3E-40 339.5 24.7 205 593-808 6-239 (254)
192 TIGR00972 3a0107s01c2 phosphat 100.0 6.2E-36 1.3E-40 337.9 24.7 203 595-808 2-233 (247)
193 COG4555 NatA ABC-type Na+ tran 100.0 1.4E-36 3E-41 311.1 17.3 201 595-808 2-223 (245)
194 PRK13642 cbiO cobalt transport 100.0 6.6E-36 1.4E-40 342.8 24.8 204 594-808 4-230 (277)
195 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.5E-36 7.5E-41 338.8 22.1 202 595-807 1-225 (242)
196 PRK13649 cbiO cobalt transport 100.0 5.2E-36 1.1E-40 344.6 23.8 205 594-808 2-235 (280)
197 PRK13640 cbiO cobalt transport 100.0 6.2E-36 1.4E-40 343.7 24.3 204 593-808 4-233 (282)
198 PRK15079 oligopeptide ABC tran 100.0 6.1E-36 1.3E-40 349.3 24.4 207 593-809 7-253 (331)
199 PRK13645 cbiO cobalt transport 100.0 6.2E-36 1.3E-40 345.3 24.0 206 593-808 5-241 (289)
200 PRK13632 cbiO cobalt transport 100.0 7E-36 1.5E-40 341.6 24.1 204 593-808 6-232 (271)
201 PRK09493 glnQ glutamine ABC tr 100.0 7.9E-36 1.7E-40 335.6 24.0 200 595-808 2-226 (240)
202 COG4175 ProV ABC-type proline/ 100.0 2E-36 4.4E-41 328.8 18.2 206 594-810 4-257 (386)
203 TIGR02211 LolD_lipo_ex lipopro 100.0 5.9E-36 1.3E-40 332.5 22.2 192 595-797 2-220 (221)
204 TIGR03415 ABC_choXWV_ATP choli 100.0 5.6E-36 1.2E-40 352.8 23.2 188 610-808 37-255 (382)
205 PRK10744 pstB phosphate transp 100.0 9.9E-36 2.2E-40 338.6 24.5 207 591-808 10-245 (260)
206 PRK13633 cobalt transporter AT 100.0 1.1E-35 2.4E-40 341.4 24.9 204 594-808 4-234 (280)
207 PRK10619 histidine/lysine/argi 100.0 8.6E-36 1.9E-40 338.6 23.7 203 592-807 3-241 (257)
208 cd03269 ABC_putative_ATPase Th 100.0 6.4E-36 1.4E-40 329.4 21.9 192 595-800 1-210 (210)
209 PRK11831 putative ABC transpor 100.0 8.9E-36 1.9E-40 340.4 23.6 202 593-808 6-234 (269)
210 TIGR02769 nickel_nikE nickel i 100.0 1.3E-35 2.9E-40 338.3 24.6 207 594-810 2-243 (265)
211 PRK13648 cbiO cobalt transport 100.0 1.3E-35 2.9E-40 339.1 24.3 203 594-808 7-232 (269)
212 PRK10070 glycine betaine trans 100.0 7.7E-36 1.7E-40 354.1 23.1 188 611-809 42-256 (400)
213 PRK11264 putative amino-acid A 100.0 1.1E-35 2.3E-40 336.7 23.0 201 594-808 3-234 (250)
214 PRK11614 livF leucine/isoleuci 100.0 1.8E-35 3.9E-40 332.1 24.7 200 594-807 5-226 (237)
215 PRK11231 fecE iron-dicitrate t 100.0 1.6E-35 3.4E-40 336.1 24.4 199 595-807 3-227 (255)
216 PRK11300 livG leucine/isoleuci 100.0 1.7E-35 3.6E-40 336.1 24.6 200 594-807 5-243 (255)
217 PRK13638 cbiO cobalt transport 100.0 1.6E-35 3.4E-40 338.9 24.4 200 595-808 2-226 (271)
218 TIGR03410 urea_trans_UrtE urea 100.0 1.2E-35 2.5E-40 332.1 22.7 198 595-805 1-219 (230)
219 cd03264 ABC_drug_resistance_li 100.0 1.1E-35 2.4E-40 327.8 22.2 190 595-800 1-211 (211)
220 PRK14235 phosphate transporter 100.0 1.8E-35 4E-40 337.5 24.7 206 591-807 16-251 (267)
221 cd03292 ABC_FtsE_transporter F 100.0 8.6E-36 1.9E-40 329.5 21.3 189 595-796 1-214 (214)
222 PRK13639 cbiO cobalt transport 100.0 1.4E-35 3E-40 339.8 23.6 201 595-808 2-227 (275)
223 cd03225 ABC_cobalt_CbiO_domain 100.0 8.6E-36 1.9E-40 328.7 21.1 187 597-795 2-211 (211)
224 PRK10584 putative ABC transpor 100.0 1.6E-35 3.5E-40 330.5 23.5 196 593-799 5-227 (228)
225 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.6E-35 3.5E-40 326.5 23.2 190 595-800 1-211 (211)
226 PRK13548 hmuV hemin importer A 100.0 2.8E-35 6E-40 334.2 25.6 200 594-807 2-230 (258)
227 TIGR03411 urea_trans_UrtD urea 100.0 1.7E-35 3.8E-40 333.3 23.6 199 594-807 2-231 (242)
228 TIGR02673 FtsE cell division A 100.0 8.8E-36 1.9E-40 329.4 20.8 188 595-795 2-214 (214)
229 PRK13652 cbiO cobalt transport 100.0 2.1E-35 4.7E-40 338.5 24.5 202 594-808 3-228 (277)
230 PRK10253 iron-enterobactin tra 100.0 2.3E-35 4.9E-40 336.5 24.4 203 591-807 4-233 (265)
231 PRK10895 lipopolysaccharide AB 100.0 2.3E-35 5E-40 332.1 24.1 200 594-807 3-226 (241)
232 PRK10575 iron-hydroxamate tran 100.0 2.1E-35 4.6E-40 336.7 24.0 202 592-807 9-237 (265)
233 PRK10247 putative ABC transpor 100.0 1.5E-35 3.2E-40 329.9 22.1 198 593-803 6-223 (225)
234 PRK11124 artP arginine transpo 100.0 2.6E-35 5.6E-40 331.8 24.3 198 595-806 3-229 (242)
235 PRK14259 phosphate ABC transpo 100.0 2.8E-35 6E-40 336.2 24.7 206 592-808 11-254 (269)
236 PRK14268 phosphate ABC transpo 100.0 2E-35 4.3E-40 335.7 23.2 205 593-808 11-243 (258)
237 PRK14237 phosphate transporter 100.0 3E-35 6.5E-40 335.7 24.6 208 590-808 16-252 (267)
238 cd03247 ABCC_cytochrome_bd The 100.0 2.2E-35 4.7E-40 316.5 22.1 166 595-800 1-178 (178)
239 TIGR01188 drrA daunorubicin re 100.0 1.2E-35 2.7E-40 344.5 21.8 188 610-808 6-214 (302)
240 PRK14245 phosphate ABC transpo 100.0 1.7E-35 3.7E-40 334.9 22.4 204 594-808 3-235 (250)
241 cd03257 ABC_NikE_OppD_transpor 100.0 3.1E-35 6.8E-40 328.3 24.1 196 595-800 2-228 (228)
242 PRK10771 thiQ thiamine transpo 100.0 6.6E-35 1.4E-39 326.3 26.8 198 595-808 2-220 (232)
243 TIGR03005 ectoine_ehuA ectoine 100.0 2.5E-35 5.4E-40 334.0 23.4 200 595-808 1-237 (252)
244 TIGR03873 F420-0_ABC_ATP propo 100.0 2.5E-35 5.4E-40 334.7 23.4 199 595-807 2-226 (256)
245 PRK14249 phosphate ABC transpo 100.0 3.4E-35 7.4E-40 332.7 24.4 204 594-808 4-236 (251)
246 PRK11308 dppF dipeptide transp 100.0 3.5E-35 7.5E-40 342.7 25.1 206 594-809 5-246 (327)
247 PRK14274 phosphate ABC transpo 100.0 3.2E-35 6.9E-40 334.4 24.1 204 594-808 12-244 (259)
248 TIGR03522 GldA_ABC_ATP gliding 100.0 2.5E-35 5.3E-40 341.7 23.5 198 595-807 3-221 (301)
249 PRK14270 phosphate ABC transpo 100.0 3.2E-35 6.9E-40 332.9 23.7 204 594-808 4-236 (251)
250 PRK14248 phosphate ABC transpo 100.0 3.2E-35 6.9E-40 335.9 24.0 206 592-808 19-253 (268)
251 PRK14251 phosphate ABC transpo 100.0 2.3E-35 5.1E-40 334.0 22.6 204 594-808 4-236 (251)
252 PRK09984 phosphonate/organopho 100.0 4.6E-35 9.9E-40 333.6 24.8 198 594-805 4-240 (262)
253 PRK14247 phosphate ABC transpo 100.0 3.8E-35 8.2E-40 332.1 23.8 204 594-808 3-235 (250)
254 PRK10908 cell division protein 100.0 3.1E-35 6.7E-40 326.8 22.6 190 595-797 2-216 (222)
255 TIGR03740 galliderm_ABC gallid 100.0 3.5E-35 7.5E-40 326.7 22.9 196 595-804 1-210 (223)
256 PRK14239 phosphate transporter 100.0 3.5E-35 7.5E-40 332.9 23.3 204 594-808 5-237 (252)
257 PRK14240 phosphate transporter 100.0 4.7E-35 1E-39 331.4 24.1 204 594-808 3-235 (250)
258 PRK11248 tauB taurine transpor 100.0 4.3E-35 9.4E-40 331.8 23.7 194 595-802 2-215 (255)
259 COG0410 LivF ABC-type branched 100.0 3.8E-35 8.3E-40 310.3 21.3 206 594-809 3-228 (237)
260 PRK11144 modC molybdate transp 100.0 4.6E-35 1E-39 345.7 24.5 198 595-809 2-220 (352)
261 PRK15112 antimicrobial peptide 100.0 6.5E-35 1.4E-39 332.9 24.6 206 594-809 4-241 (267)
262 TIGR01978 sufC FeS assembly AT 100.0 4.1E-35 8.9E-40 330.6 22.7 198 595-805 1-232 (243)
263 cd03262 ABC_HisP_GlnQ_permease 100.0 2.8E-35 6.2E-40 325.1 20.9 188 595-796 1-213 (213)
264 PRK14243 phosphate transporter 100.0 7.2E-35 1.6E-39 332.0 24.4 204 594-808 10-249 (264)
265 PRK11022 dppD dipeptide transp 100.0 5.8E-35 1.2E-39 341.1 24.0 208 594-809 3-245 (326)
266 PRK14238 phosphate transporter 100.0 7.2E-35 1.6E-39 333.1 24.1 205 593-808 23-256 (271)
267 cd03223 ABCD_peroxisomal_ALDP 100.0 5E-35 1.1E-39 309.6 21.1 161 595-794 1-163 (166)
268 PRK14244 phosphate ABC transpo 100.0 4.9E-35 1.1E-39 331.4 21.9 203 595-808 6-238 (251)
269 PRK09544 znuC high-affinity zi 100.0 1E-34 2.3E-39 327.5 24.5 199 594-807 4-209 (251)
270 PRK14236 phosphate transporter 100.0 9.3E-35 2E-39 332.6 24.4 207 591-808 22-257 (272)
271 PRK14267 phosphate ABC transpo 100.0 6.9E-35 1.5E-39 330.6 23.1 204 594-808 4-238 (253)
272 cd03246 ABCC_Protease_Secretio 100.0 4.9E-35 1.1E-39 312.2 20.5 160 595-796 1-173 (173)
273 TIGR00968 3a0106s01 sulfate AB 100.0 9.8E-35 2.1E-39 325.9 23.7 199 595-807 1-220 (237)
274 TIGR01277 thiQ thiamine ABC tr 100.0 1E-34 2.2E-39 320.6 23.3 190 596-801 2-212 (213)
275 PRK14262 phosphate ABC transpo 100.0 8.2E-35 1.8E-39 329.4 22.7 204 594-808 3-235 (250)
276 cd03300 ABC_PotA_N PotA is an 100.0 7.5E-35 1.6E-39 325.8 22.0 200 595-808 1-221 (232)
277 PRK14256 phosphate ABC transpo 100.0 1.3E-34 2.7E-39 328.2 24.0 205 593-808 3-237 (252)
278 PRK11701 phnK phosphonate C-P 100.0 1.2E-34 2.7E-39 329.3 23.7 202 594-808 6-242 (258)
279 cd03299 ABC_ModC_like Archeal 100.0 1.2E-34 2.6E-39 324.7 23.2 199 595-808 1-220 (235)
280 PRK14253 phosphate ABC transpo 100.0 1.3E-34 2.9E-39 327.5 23.7 203 594-807 3-233 (249)
281 PRK15093 antimicrobial peptide 100.0 1E-34 2.2E-39 340.1 23.5 207 594-808 3-249 (330)
282 PRK15056 manganese/iron transp 100.0 1.6E-34 3.5E-39 330.6 23.8 200 594-807 6-230 (272)
283 PRK14252 phosphate ABC transpo 100.0 1.9E-34 4.2E-39 328.9 24.3 205 592-807 14-249 (265)
284 PRK14261 phosphate ABC transpo 100.0 1.7E-34 3.7E-39 327.3 23.4 204 594-808 6-238 (253)
285 PRK10418 nikD nickel transport 100.0 3.7E-34 8.1E-39 324.5 26.2 204 594-809 4-232 (254)
286 PRK09473 oppD oligopeptide tra 100.0 1.4E-34 3E-39 338.1 23.2 209 593-809 11-253 (330)
287 PRK14254 phosphate ABC transpo 100.0 1.6E-34 3.4E-39 332.2 23.3 206 592-808 37-270 (285)
288 PRK13546 teichoic acids export 100.0 2.9E-34 6.3E-39 325.6 24.9 209 593-812 3-237 (264)
289 PRK14271 phosphate ABC transpo 100.0 2.1E-34 4.6E-39 329.8 23.8 204 594-808 21-252 (276)
290 PRK14260 phosphate ABC transpo 100.0 2.1E-34 4.5E-39 327.6 23.5 204 594-808 7-244 (259)
291 PRK14275 phosphate ABC transpo 100.0 1.7E-34 3.7E-39 332.2 23.1 206 592-808 37-271 (286)
292 PRK14266 phosphate ABC transpo 100.0 1.7E-34 3.6E-39 326.9 22.5 204 594-808 3-235 (250)
293 PRK13547 hmuV hemin importer A 100.0 2.4E-34 5.3E-39 327.9 23.9 199 595-807 2-244 (272)
294 PRK14265 phosphate ABC transpo 100.0 3.6E-34 7.8E-39 327.7 25.0 206 592-808 18-259 (274)
295 COG4178 ABC-type uncharacteriz 100.0 2.8E-31 6E-36 319.4 50.8 437 339-791 107-586 (604)
296 PRK10419 nikE nickel transport 100.0 2.5E-34 5.4E-39 328.1 23.4 209 594-812 3-246 (268)
297 PRK14263 phosphate ABC transpo 100.0 3.2E-34 6.9E-39 325.8 24.0 205 593-808 7-246 (261)
298 TIGR02142 modC_ABC molybdenum 100.0 2.4E-34 5.3E-39 340.1 23.9 195 599-809 4-223 (354)
299 PRK14241 phosphate transporter 100.0 2.7E-34 5.9E-39 326.6 23.1 204 594-808 4-243 (258)
300 PRK14264 phosphate ABC transpo 100.0 3.5E-34 7.5E-39 332.5 24.2 205 593-808 44-290 (305)
301 cd03234 ABCG_White The White s 100.0 2.6E-34 5.6E-39 320.2 22.2 196 594-800 3-226 (226)
302 PRK14272 phosphate ABC transpo 100.0 3.6E-34 7.7E-39 324.7 23.5 204 594-808 4-237 (252)
303 PRK14258 phosphate ABC transpo 100.0 3.6E-34 7.7E-39 325.9 23.2 205 594-808 7-246 (261)
304 PRK14255 phosphate ABC transpo 100.0 4.2E-34 9.1E-39 324.0 23.5 204 594-808 5-237 (252)
305 COG1137 YhbG ABC-type (unclass 100.0 1.6E-35 3.4E-40 303.1 10.4 202 594-809 4-230 (243)
306 TIGR02982 heterocyst_DevA ABC 100.0 3.1E-34 6.8E-39 318.2 21.7 191 595-796 2-219 (220)
307 cd03297 ABC_ModC_molybdenum_tr 100.0 3.1E-34 6.7E-39 317.0 21.4 185 599-800 5-214 (214)
308 cd03213 ABCG_EPDR ABCG transpo 100.0 4.9E-34 1.1E-38 310.0 21.1 174 594-800 3-194 (194)
309 TIGR02323 CP_lyasePhnK phospho 100.0 8.2E-34 1.8E-38 321.8 23.6 202 594-808 3-239 (253)
310 TIGR02770 nickel_nikD nickel i 100.0 6.9E-34 1.5E-38 317.6 22.3 189 612-808 1-216 (230)
311 cd03233 ABC_PDR_domain1 The pl 100.0 7.8E-34 1.7E-38 310.5 21.9 180 594-800 3-202 (202)
312 cd03230 ABC_DR_subfamily_A Thi 100.0 6.9E-34 1.5E-38 303.3 21.0 159 595-796 1-173 (173)
313 PRK13545 tagH teichoic acids e 100.0 1.4E-33 3.1E-38 336.6 25.9 206 593-809 20-234 (549)
314 TIGR01184 ntrCD nitrate transp 100.0 6E-34 1.3E-38 317.9 20.9 182 613-805 1-202 (230)
315 COG4181 Predicted ABC-type tra 100.0 4.1E-34 8.9E-39 285.0 16.3 194 594-798 6-226 (228)
316 cd03232 ABC_PDR_domain2 The pl 100.0 8.8E-34 1.9E-38 307.6 20.2 174 594-800 3-192 (192)
317 COG1123 ATPase components of v 100.0 1.6E-33 3.4E-38 334.9 23.9 215 592-816 278-529 (539)
318 COG4525 TauB ABC-type taurine 100.0 5.3E-34 1.1E-38 290.0 16.7 196 595-802 4-219 (259)
319 TIGR03608 L_ocin_972_ABC putat 100.0 7.7E-34 1.7E-38 312.0 19.5 181 597-791 1-206 (206)
320 PRK14246 phosphate ABC transpo 100.0 2.2E-33 4.7E-38 318.3 23.6 205 593-808 9-242 (257)
321 cd03215 ABC_Carb_Monos_II This 100.0 9.6E-34 2.1E-38 304.8 19.5 160 594-796 4-182 (182)
322 PRK03695 vitamin B12-transport 100.0 2.1E-33 4.7E-38 316.9 23.2 193 596-807 2-222 (248)
323 COG4559 ABC-type hemin transpo 100.0 1E-33 2.2E-38 292.4 18.0 204 595-808 2-231 (259)
324 PRK10261 glutathione transport 100.0 1.8E-33 3.9E-38 356.4 24.6 205 593-808 312-554 (623)
325 cd03229 ABC_Class3 This class 100.0 1.6E-33 3.5E-38 301.9 20.3 160 595-795 1-178 (178)
326 cd03228 ABCC_MRP_Like The MRP 100.0 1.8E-33 4E-38 299.5 20.5 158 595-795 1-171 (171)
327 CHL00131 ycf16 sulfate ABC tra 100.0 4.8E-33 1E-37 315.4 24.6 198 594-804 7-238 (252)
328 COG4598 HisP ABC-type histidin 100.0 4E-34 8.7E-39 286.6 13.8 203 593-809 5-243 (256)
329 cd03267 ABC_NatA_like Similar 100.0 2E-33 4.2E-38 315.0 20.9 180 610-800 34-236 (236)
330 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2E-33 4.3E-38 312.3 20.7 192 595-800 23-224 (224)
331 COG4619 ABC-type uncharacteriz 100.0 5.1E-34 1.1E-38 283.4 13.8 179 609-797 15-213 (223)
332 PRK13538 cytochrome c biogenes 100.0 2.9E-33 6.2E-38 306.8 20.9 183 595-791 2-202 (204)
333 COG0444 DppD ABC-type dipeptid 100.0 2.5E-33 5.4E-38 311.7 20.3 212 595-814 2-251 (316)
334 COG0411 LivG ABC-type branched 100.0 9.3E-34 2E-38 302.0 15.8 202 595-810 5-242 (250)
335 PRK13543 cytochrome c biogenes 100.0 6.9E-33 1.5E-37 306.0 22.5 187 593-793 10-212 (214)
336 PRK09580 sufC cysteine desulfu 100.0 1.1E-32 2.4E-37 311.7 24.5 198 595-805 2-233 (248)
337 cd03231 ABC_CcmA_heme_exporter 100.0 8.3E-33 1.8E-37 302.3 22.2 183 595-791 1-198 (201)
338 PRK13540 cytochrome c biogenes 100.0 5.7E-33 1.2E-37 303.4 20.5 182 595-790 2-198 (200)
339 COG4604 CeuD ABC-type enteroch 100.0 4.4E-34 9.6E-39 291.3 10.2 200 595-808 2-226 (252)
340 PRK15134 microcin C ABC transp 100.0 6E-33 1.3E-37 346.9 22.6 205 593-808 274-516 (529)
341 PRK13549 xylose transporter AT 100.0 3.4E-33 7.5E-38 347.2 19.6 202 594-805 259-492 (506)
342 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.3E-32 2.8E-37 300.5 21.6 172 595-805 1-191 (200)
343 COG4161 ArtP ABC-type arginine 100.0 3.4E-33 7.3E-38 275.0 15.1 199 594-806 2-229 (242)
344 cd03214 ABC_Iron-Siderophores_ 100.0 5.3E-33 1.1E-37 298.5 18.0 177 596-800 1-180 (180)
345 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.3E-32 2.9E-37 309.0 21.7 192 602-806 1-206 (246)
346 TIGR03269 met_CoM_red_A2 methy 100.0 1.1E-32 2.4E-37 344.0 23.3 209 593-807 278-517 (520)
347 TIGR01257 rim_protein retinal- 100.0 1.2E-30 2.7E-35 351.6 43.9 206 591-808 1934-2160(2272)
348 TIGR03771 anch_rpt_ABC anchore 100.0 1.1E-32 2.4E-37 306.2 20.1 179 618-808 1-202 (223)
349 PRK13539 cytochrome c biogenes 100.0 2.2E-32 4.8E-37 300.4 22.1 184 595-793 3-200 (207)
350 TIGR02324 CP_lyasePhnL phospho 100.0 1.4E-32 3E-37 306.0 20.7 187 595-791 2-222 (224)
351 COG4148 ModC ABC-type molybdat 100.0 5.8E-33 1.3E-37 297.0 16.4 184 615-809 16-220 (352)
352 cd03216 ABC_Carb_Monos_I This 100.0 2E-32 4.3E-37 288.9 20.3 160 595-798 1-162 (163)
353 TIGR00955 3a01204 The Eye Pigm 100.0 7.9E-33 1.7E-37 350.1 19.7 191 609-806 37-255 (617)
354 PRK13541 cytochrome c biogenes 100.0 3E-32 6.4E-37 296.6 20.0 179 595-788 2-192 (195)
355 KOG0060 Long-chain acyl-CoA tr 100.0 1.8E-29 3.9E-34 293.7 44.0 452 331-793 135-641 (659)
356 PRK15064 ABC transporter ATP-b 100.0 5.9E-32 1.3E-36 338.0 25.3 200 593-808 318-526 (530)
357 PRK09700 D-allose transporter 100.0 3.1E-32 6.7E-37 339.2 21.0 194 594-802 265-493 (510)
358 TIGR01189 ccmA heme ABC export 100.0 4.9E-32 1.1E-36 295.7 19.4 180 595-789 1-196 (198)
359 TIGR01166 cbiO cobalt transpor 100.0 3.3E-32 7.1E-37 295.1 17.6 161 610-781 5-189 (190)
360 TIGR02633 xylG D-xylose ABC tr 100.0 3E-32 6.5E-37 338.8 19.4 200 594-803 257-488 (500)
361 PLN03211 ABC transporter G-25; 100.0 2.2E-31 4.8E-36 336.5 26.6 191 610-807 81-296 (659)
362 COG4152 ABC-type uncharacteriz 100.0 4.1E-32 8.9E-37 285.8 16.1 205 594-808 2-220 (300)
363 PRK11288 araG L-arabinose tran 100.0 7.2E-32 1.6E-36 335.0 20.9 196 594-806 257-484 (501)
364 PRK10762 D-ribose transporter 100.0 6.5E-32 1.4E-36 335.4 19.6 194 594-805 257-482 (501)
365 PRK15177 Vi polysaccharide exp 100.0 1.4E-31 3.1E-36 294.8 19.9 184 612-807 2-192 (213)
366 COG4608 AppF ABC-type oligopep 100.0 9.4E-32 2E-36 293.3 17.9 194 594-814 4-207 (268)
367 TIGR01187 potA spermidine/putr 100.0 1.7E-31 3.7E-36 312.3 19.3 171 628-809 1-192 (325)
368 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4.6E-31 1E-35 272.4 19.1 141 595-795 1-144 (144)
369 PRK15439 autoinducer 2 ABC tra 100.0 2E-31 4.3E-36 331.3 19.5 195 594-806 268-491 (510)
370 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.3E-31 1.8E-35 328.8 24.9 199 593-807 321-531 (552)
371 PRK11819 putative ABC transpor 100.0 1E-30 2.2E-35 328.0 25.6 200 593-808 323-534 (556)
372 PRK10636 putative ABC transpor 100.0 1.1E-30 2.5E-35 331.0 24.6 199 592-806 310-516 (638)
373 COG4172 ABC-type uncharacteriz 100.0 1.2E-30 2.7E-35 290.9 21.5 207 593-810 275-519 (534)
374 PLN03073 ABC transporter F fam 100.0 1.8E-30 3.9E-35 329.7 25.2 198 593-806 507-713 (718)
375 PRK10535 macrolide transporter 100.0 1.3E-30 2.8E-35 331.4 23.9 202 594-806 4-231 (648)
376 PRK13409 putative ATPase RIL; 100.0 1.1E-30 2.4E-35 326.3 22.4 193 593-801 339-536 (590)
377 PRK11147 ABC transporter ATPas 100.0 1.9E-30 4.2E-35 329.8 25.0 200 592-807 317-528 (635)
378 COG1134 TagH ABC-type polysacc 100.0 3.5E-30 7.7E-35 275.2 20.0 188 609-807 39-236 (249)
379 cd03222 ABC_RNaseL_inhibitor T 100.0 1.6E-30 3.6E-35 275.9 17.3 152 598-804 4-160 (177)
380 PRK10982 galactose/methyl gala 100.0 1.6E-30 3.4E-35 322.5 19.7 196 593-803 249-476 (491)
381 PRK10938 putative molybdenum t 100.0 1.2E-30 2.6E-35 323.6 18.6 194 593-799 259-484 (490)
382 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.4E-30 5.3E-35 291.9 18.2 186 599-799 5-219 (255)
383 TIGR00956 3a01205 Pleiotropic 100.0 3.3E-30 7.2E-35 349.3 22.7 204 594-804 759-990 (1394)
384 KOG0927 Predicted transporter 100.0 1E-29 2.3E-34 293.7 22.3 205 592-807 73-309 (614)
385 cd03238 ABC_UvrA The excision 100.0 5.3E-30 1.1E-34 271.8 17.6 150 609-796 7-166 (176)
386 COG4615 PvdE ABC-type sideroph 100.0 8.1E-27 1.8E-31 259.4 39.6 399 940-1359 53-458 (546)
387 COG1101 PhnK ABC-type uncharac 100.0 7.9E-30 1.7E-34 264.2 14.7 189 609-799 18-230 (263)
388 COG1119 ModF ABC-type molybden 100.0 6E-30 1.3E-34 272.8 12.7 197 591-801 28-256 (257)
389 COG4136 ABC-type uncharacteriz 100.0 5.8E-29 1.3E-33 242.7 14.5 183 595-791 3-207 (213)
390 COG4167 SapF ABC-type antimicr 100.0 5.8E-29 1.2E-33 250.1 14.5 189 611-809 27-241 (267)
391 PLN03140 ABC transporter G fam 100.0 1.6E-28 3.5E-33 331.3 23.6 204 594-804 867-1107(1470)
392 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.1E-28 4.5E-33 257.0 18.8 142 597-795 2-157 (157)
393 COG0488 Uup ATPase components 100.0 4.3E-27 9.4E-32 286.3 26.2 202 591-808 318-526 (530)
394 COG4674 Uncharacterized ABC-ty 99.9 1.9E-27 4E-32 242.7 15.1 201 593-808 4-236 (249)
395 KOG0065 Pleiotropic drug resis 99.9 7.5E-26 1.6E-30 285.9 32.2 191 610-807 128-351 (1391)
396 COG4586 ABC-type uncharacteriz 99.9 6.3E-28 1.4E-32 258.4 11.5 189 609-810 36-249 (325)
397 KOG0061 Transporter, ABC super 99.9 4.4E-27 9.6E-32 294.5 20.0 207 593-806 24-259 (613)
398 cd03270 ABC_UvrA_I The excisio 99.9 6.8E-27 1.5E-31 259.9 18.7 180 609-800 7-226 (226)
399 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.4E-27 3E-32 272.0 11.0 145 1214-1359 1-148 (275)
400 PRK14257 phosphate ABC transpo 99.9 2.4E-27 5.3E-32 276.8 11.9 177 1179-1359 35-235 (329)
401 COG0396 sufC Cysteine desulfur 99.9 6.7E-26 1.5E-30 238.8 21.4 201 594-806 3-232 (251)
402 KOG0062 ATPase component of AB 99.9 3E-26 6.6E-31 263.8 19.6 192 592-806 78-284 (582)
403 cd03271 ABC_UvrA_II The excisi 99.9 5.9E-26 1.3E-30 254.8 17.5 182 611-802 9-261 (261)
404 COG4107 PhnK ABC-type phosphon 99.9 7.9E-26 1.7E-30 225.8 15.5 217 594-816 6-251 (258)
405 COG4133 CcmA ABC-type transpor 99.9 1.3E-25 2.9E-30 229.4 14.8 164 609-783 14-194 (209)
406 PF00005 ABC_tran: ABC transpo 99.9 8.7E-26 1.9E-30 231.4 11.4 123 613-748 1-137 (137)
407 PRK00635 excinuclease ABC subu 99.9 2.7E-24 5.8E-29 286.4 28.6 94 713-806 803-905 (1809)
408 KOG0059 Lipid exporter ABCA1 a 99.9 8E-25 1.7E-29 285.7 18.2 203 593-808 563-788 (885)
409 COG4778 PhnL ABC-type phosphon 99.9 3E-25 6.5E-30 221.3 10.5 190 594-793 4-227 (235)
410 KOG0064 Peroxisomal long-chain 99.9 1.7E-20 3.7E-25 215.5 47.7 443 329-786 168-676 (728)
411 cd03278 ABC_SMC_barmotin Barmo 99.9 1.5E-24 3.3E-29 235.6 13.6 153 614-792 14-189 (197)
412 COG4178 ABC-type uncharacteriz 99.9 1.5E-20 3.3E-25 227.0 40.6 402 937-1359 88-525 (604)
413 KOG0927 Predicted transporter 99.9 1.3E-23 2.7E-28 243.6 11.5 200 592-806 387-595 (614)
414 cd03240 ABC_Rad50 The catalyti 99.9 1.4E-22 3.1E-27 221.5 15.5 155 615-793 15-197 (204)
415 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.5E-22 3.3E-27 223.3 15.7 180 594-796 5-211 (213)
416 cd03369 ABCC_NFT1 Domain 2 of 99.9 1E-22 2.3E-27 223.9 12.2 135 1210-1359 1-135 (207)
417 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.3E-22 5.1E-27 226.8 14.8 176 611-792 16-234 (243)
418 COG1129 MglA ABC-type sugar tr 99.9 7.7E-22 1.7E-26 234.1 17.6 182 612-800 274-483 (500)
419 PRK00349 uvrA excinuclease ABC 99.9 1E-21 2.3E-26 253.0 20.2 98 713-810 824-930 (943)
420 cd03273 ABC_SMC2_euk Eukaryoti 99.9 7.2E-22 1.6E-26 223.7 14.2 172 623-795 25-247 (251)
421 cd03244 ABCC_MRP_domain2 Domai 99.9 3.5E-22 7.7E-27 222.0 11.0 146 1214-1359 1-149 (221)
422 COG1135 AbcC ABC-type metal io 99.9 3.9E-22 8.5E-27 218.8 11.0 137 1216-1360 2-152 (339)
423 cd03288 ABCC_SUR2 The SUR doma 99.9 4E-22 8.7E-27 226.5 11.1 148 1212-1359 16-166 (257)
424 COG4138 BtuD ABC-type cobalami 99.9 1.1E-22 2.4E-27 203.8 4.7 185 612-808 14-222 (248)
425 cd03275 ABC_SMC1_euk Eukaryoti 99.9 7.5E-22 1.6E-26 222.8 11.5 174 618-792 18-232 (247)
426 KOG0066 eIF2-interacting prote 99.9 8.9E-21 1.9E-25 212.2 18.8 200 594-805 264-497 (807)
427 KOG0065 Pleiotropic drug resis 99.9 7.5E-22 1.6E-26 250.0 10.4 202 596-804 789-1018(1391)
428 COG1125 OpuBA ABC-type proline 99.9 6.4E-22 1.4E-26 210.6 7.6 137 1216-1360 2-146 (309)
429 COG1126 GlnQ ABC-type polar am 99.9 1.2E-21 2.6E-26 205.0 9.2 136 1215-1360 2-147 (240)
430 TIGR00630 uvra excinuclease AB 99.8 8.8E-21 1.9E-25 244.0 19.1 93 713-805 822-923 (924)
431 COG3638 ABC-type phosphate/pho 99.8 3.1E-21 6.6E-26 204.5 8.9 136 1215-1359 3-157 (258)
432 PF00664 ABC_membrane: ABC tra 99.8 3.4E-18 7.4E-23 193.4 34.1 259 909-1167 8-275 (275)
433 COG2884 FtsE Predicted ATPase 99.8 3.3E-21 7.1E-26 197.1 8.0 135 1216-1359 2-147 (223)
434 KOG0066 eIF2-interacting prote 99.8 2.4E-20 5.1E-25 208.9 14.5 199 593-806 585-790 (807)
435 KOG0062 ATPase component of AB 99.8 3.2E-20 6.9E-25 214.5 14.5 197 592-802 360-564 (582)
436 cd03274 ABC_SMC4_euk Eukaryoti 99.8 2.3E-21 4.9E-26 213.1 4.9 181 595-793 6-204 (212)
437 COG1122 CbiO ABC-type cobalt t 99.8 2.3E-20 5E-25 206.1 12.0 137 1215-1360 3-149 (235)
438 COG1120 FepC ABC-type cobalami 99.8 1.5E-20 3.1E-25 207.5 10.0 135 1215-1359 2-148 (258)
439 cd03252 ABCC_Hemolysin The ABC 99.8 1.9E-20 4E-25 210.5 10.7 144 1216-1359 1-148 (237)
440 cd03276 ABC_SMC6_euk Eukaryoti 99.8 6E-20 1.3E-24 199.8 14.1 162 612-795 11-192 (198)
441 cd03246 ABCC_Protease_Secretio 99.8 2.3E-20 4.9E-25 199.3 10.0 96 1216-1311 1-96 (173)
442 COG1245 Predicted ATPase, RNas 99.8 9.1E-20 2E-24 207.2 15.1 181 599-793 340-531 (591)
443 cd03248 ABCC_TAP TAP, the Tran 99.8 2E-20 4.4E-25 208.7 9.5 148 1212-1359 8-160 (226)
444 TIGR00960 3a0501s02 Type II (G 99.8 2.1E-20 4.5E-25 207.0 9.4 136 1216-1359 2-148 (216)
445 COG3839 MalK ABC-type sugar tr 99.8 3.1E-20 6.6E-25 212.5 10.5 134 1215-1360 3-144 (338)
446 cd03254 ABCC_Glucan_exporter_l 99.8 2.1E-20 4.6E-25 208.9 9.1 145 1214-1359 1-149 (229)
447 PRK13631 cbiO cobalt transport 99.8 1.3E-20 2.8E-25 219.7 7.2 140 1214-1360 20-187 (320)
448 cd03239 ABC_SMC_head The struc 99.8 7.6E-20 1.7E-24 195.4 12.5 154 614-793 13-172 (178)
449 cd03253 ABCC_ATM1_transporter 99.8 3.4E-20 7.4E-25 208.2 10.0 143 1216-1359 1-147 (236)
450 PRK11629 lolD lipoprotein tran 99.8 5.1E-20 1.1E-24 206.4 10.4 137 1215-1359 5-155 (233)
451 PRK14250 phosphate ABC transpo 99.8 5.3E-20 1.1E-24 207.3 10.3 136 1215-1359 3-141 (241)
452 PRK13650 cbiO cobalt transport 99.8 4.4E-20 9.5E-25 212.2 9.6 137 1215-1359 4-150 (279)
453 cd03245 ABCC_bacteriocin_expor 99.8 6.2E-20 1.3E-24 203.9 10.5 146 1214-1359 1-150 (220)
454 cd03247 ABCC_cytochrome_bd The 99.8 3.4E-20 7.4E-25 198.9 8.0 95 1216-1311 1-95 (178)
455 cd03266 ABC_NatA_sodium_export 99.8 5.7E-20 1.2E-24 203.9 9.9 135 1216-1359 2-146 (218)
456 TIGR02314 ABC_MetN D-methionin 99.8 5.6E-20 1.2E-24 215.4 10.3 136 1216-1359 2-150 (343)
457 COG1117 PstB ABC-type phosphat 99.8 3.7E-20 8E-25 192.8 7.7 138 1214-1359 6-159 (253)
458 cd03250 ABCC_MRP_domain1 Domai 99.8 5.9E-20 1.3E-24 201.6 9.8 131 1216-1359 1-137 (204)
459 PRK13646 cbiO cobalt transport 99.8 5.6E-20 1.2E-24 212.1 9.8 138 1215-1360 2-156 (286)
460 KOG2355 Predicted ABC-type tra 99.8 5.3E-19 1.2E-23 181.9 15.8 200 591-806 10-236 (291)
461 PRK13637 cbiO cobalt transport 99.8 6E-20 1.3E-24 211.8 10.0 138 1216-1359 3-154 (287)
462 cd03251 ABCC_MsbA MsbA is an e 99.8 6E-20 1.3E-24 206.0 9.7 144 1216-1359 1-148 (234)
463 cd03260 ABC_PstB_phosphate_tra 99.8 4.8E-20 1E-24 205.8 8.6 136 1216-1359 1-151 (227)
464 PRK14269 phosphate ABC transpo 99.8 4.7E-20 1E-24 208.4 8.6 139 1215-1359 2-152 (246)
465 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 5.7E-20 1.2E-24 203.9 9.0 136 1216-1359 1-150 (218)
466 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 6.7E-20 1.4E-24 206.1 9.5 144 1216-1359 1-149 (238)
467 PRK13647 cbiO cobalt transport 99.8 7E-20 1.5E-24 209.9 9.4 136 1215-1359 4-148 (274)
468 cd03256 ABC_PhnC_transporter A 99.8 8.6E-20 1.9E-24 205.7 9.4 135 1216-1359 1-154 (241)
469 cd03263 ABC_subfamily_A The AB 99.8 9E-20 1.9E-24 202.6 9.4 135 1216-1359 1-143 (220)
470 COG3842 PotA ABC-type spermidi 99.8 1.5E-19 3.2E-24 208.0 11.3 133 1214-1359 4-146 (352)
471 TIGR00630 uvra excinuclease AB 99.8 2.7E-18 5.8E-23 221.3 24.1 93 713-805 481-581 (924)
472 cd03261 ABC_Org_Solvent_Resist 99.8 1E-19 2.3E-24 204.1 9.7 134 1216-1359 1-146 (235)
473 COG1136 SalX ABC-type antimicr 99.8 1.9E-19 4.2E-24 194.8 11.0 137 1216-1360 2-153 (226)
474 PRK13632 cbiO cobalt transport 99.8 1.5E-19 3.2E-24 207.1 10.4 137 1215-1359 7-152 (271)
475 TIGR02673 FtsE cell division A 99.8 1.4E-19 3E-24 200.3 9.6 135 1216-1359 2-147 (214)
476 PRK14259 phosphate ABC transpo 99.8 1.9E-19 4.1E-24 205.9 10.9 141 1213-1359 11-164 (269)
477 cd03292 ABC_FtsE_transporter F 99.8 8.5E-20 1.8E-24 201.9 7.8 135 1216-1359 1-146 (214)
478 PRK13635 cbiO cobalt transport 99.8 1.4E-19 3.1E-24 207.8 9.7 137 1215-1359 5-150 (279)
479 cd03226 ABC_cobalt_CbiO_domain 99.8 1.5E-19 3.3E-24 198.5 9.4 131 1217-1359 1-136 (205)
480 cd03225 ABC_cobalt_CbiO_domain 99.8 1.1E-19 2.3E-24 200.6 8.2 135 1217-1359 1-144 (211)
481 TIGR02315 ABC_phnC phosphonate 99.8 1.6E-19 3.5E-24 203.7 9.7 135 1216-1359 2-155 (243)
482 cd03268 ABC_BcrA_bacitracin_re 99.8 1.4E-19 3E-24 199.3 8.9 132 1216-1359 1-136 (208)
483 PRK10744 pstB phosphate transp 99.8 1.8E-19 3.8E-24 205.3 10.0 142 1212-1359 10-166 (260)
484 TIGR02211 LolD_lipo_ex lipopro 99.8 2.2E-19 4.8E-24 199.6 10.6 136 1216-1359 2-151 (221)
485 PRK13643 cbiO cobalt transport 99.8 1.7E-19 3.6E-24 208.2 9.6 136 1216-1359 2-154 (288)
486 cd03228 ABCC_MRP_Like The MRP 99.8 2E-19 4.3E-24 191.7 9.4 96 1216-1311 1-96 (171)
487 cd03290 ABCC_SUR1_N The SUR do 99.8 2.3E-19 4.9E-24 199.0 10.2 143 1216-1359 1-150 (218)
488 PF00664 ABC_membrane: ABC tra 99.8 6.3E-16 1.4E-20 174.9 38.4 269 280-549 2-275 (275)
489 COG3845 ABC-type uncharacteriz 99.8 2.5E-18 5.5E-23 199.7 18.8 206 591-804 254-489 (501)
490 cd03295 ABC_OpuCA_Osmoprotecti 99.8 2E-19 4.2E-24 202.8 9.3 137 1216-1359 1-145 (242)
491 PRK10908 cell division protein 99.8 3.4E-19 7.4E-24 198.2 11.0 135 1216-1359 2-147 (222)
492 cd03224 ABC_TM1139_LivF_branch 99.8 1.8E-19 4E-24 200.4 8.8 135 1216-1359 1-142 (222)
493 PRK13636 cbiO cobalt transport 99.8 2.3E-19 5.1E-24 206.6 9.9 136 1215-1359 5-151 (283)
494 cd03230 ABC_DR_subfamily_A Thi 99.8 2E-19 4.4E-24 192.0 8.4 94 1216-1312 1-95 (173)
495 cd03259 ABC_Carb_Solutes_like 99.8 1.9E-19 4.1E-24 198.9 8.3 132 1216-1359 1-140 (213)
496 PRK10247 putative ABC transpor 99.8 3.8E-19 8.3E-24 198.2 10.7 136 1215-1359 7-147 (225)
497 cd03258 ABC_MetN_methionine_tr 99.8 2.5E-19 5.5E-24 200.8 8.9 136 1216-1359 2-150 (233)
498 cd03229 ABC_Class3 This class 99.8 3.2E-19 7E-24 191.3 9.2 96 1216-1313 1-99 (178)
499 PRK11153 metN DL-methionine tr 99.8 2.8E-19 6.1E-24 210.9 9.5 136 1216-1359 2-150 (343)
500 cd03219 ABC_Mj1267_LivG_branch 99.8 3E-19 6.5E-24 200.6 9.1 134 1216-1359 1-153 (236)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.4e-247 Score=2332.89 Aligned_cols=1152 Identities=43% Similarity=0.708 Sum_probs=1058.5
Q ss_pred CCCCccCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 000671 197 QTELGKAGL--LRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNV 274 (1361)
Q Consensus 197 ~~p~~~a~~--~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~ 274 (1361)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.++. ++.|+++++++++
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~---~~~psl~~al~~~ 198 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRS---GKKPSLLRALLRT 198 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccc---cCCcHHHHHHHHH
Confidence 345555555 99999999999999999999999999999999999999999999999876432 2568899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1361)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~ 354 (1361)
||+++++.+++.++.+...|++|++|+.+++|.++++.+.+.||.|+++++++.++++++.+||+|..+++|+|+|++++
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~ 278 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI 278 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999988777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1361)
Q Consensus 355 ~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l~ 434 (1361)
++||+|+|++++.+++++++|+|+|+|++|++|+++++.++|.+|++|+|+++++++||+++|+++++|++++++++|+|
T Consensus 279 ~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 279 SAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTII 514 (1361)
Q Consensus 435 ~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v 514 (1361)
.+++++++++|++.|+.+|+|+++|||+|+|||+|||||||++|.++|+++|++|++++||..+..+++.++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCc
Q 000671 515 SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1361)
Q Consensus 515 ~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1361)
++++|++|++..++.+||++||+++++||+|+.|+.++|+.++.++|++||++|+++||..+|.+++..++.+..+.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 99999999953348999999999999999999999999999999999999999999999999998766654444556678
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCCCCH
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~~ti 674 (1361)
|+++|++|+|+++...+.|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|.+|||||+|||+|+||
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTV 598 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcH
Confidence 99999999999865567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q 000671 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1361)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~ 754 (1361)
||||+||.|||++||++|+++|+|++|++.||+||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|+
T Consensus 599 reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 599 RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCC
Q 000671 755 AATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834 (1361)
Q Consensus 755 ~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1361)
++|||++|+++.+++||+|+|||+++++++||+|++|+||+|.++|+|+|+++.+..|.++..+.........+.+ ...
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 757 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEK-DLE 757 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccccccc-ccc
Confidence 9999999999999999999999999999999999999999999999999999988888887433221111100000 000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCccc-cccccccCccchHHHHhhCcccHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 000671 835 GGAEKVEKGRTARPEEPNGIYPRKESSEG-EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFV 913 (1361)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~l~~~~~~~~~ 913 (1361)
. . ..+ ...+.......+...+. ....+...++.++|+++.|.|+|++|+.|+++.+|+..+++.+++.+..+
T Consensus 758 ~-~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~ 830 (1381)
T KOG0054|consen 758 S-G-ESS-----RESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQ 830 (1381)
T ss_pred c-c-ccc-----cchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 0 0 000 00000000000000000 00111124567788899999999999999998778877777788888899
Q ss_pred HHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 000671 914 GLQAAATYWLAYAIQIPK------ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987 (1361)
Q Consensus 914 ~~~~~~~~wl~~~~~~~~------~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd 987 (1361)
++..+.+||+++|++... ....+|+++|+++++++.++.+++++.+...++++|++||++|+++++|+||+|||
T Consensus 831 ~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd 910 (1381)
T KOG0054|consen 831 VLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD 910 (1381)
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC
Confidence 999999999999997642 34568999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000671 988 STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067 (1361)
Q Consensus 988 ~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~ 1067 (1361)
+||+|||+||||+|++.+|..+|..+..++.++++++++++++++++|+++++++|+.++++++++||++++||+||+++
T Consensus 911 tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLes 990 (1381)
T KOG0054|consen 911 TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLES 990 (1381)
T ss_pred CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q 000671 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY 1147 (1361)
Q Consensus 1068 ~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~vl~~~g~ 1147 (1361)
.+|||+++||+||++|+.|||||++|++|.+++.+++|.+.+++|....++||+++|+|++++++++++++++++...+.
T Consensus 991 itRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~ 1070 (1381)
T KOG0054|consen 991 ITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL 1070 (1381)
T ss_pred cccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887766555
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCC
Q 000671 1148 VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRP 1227 (1361)
Q Consensus 1148 is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~ 1227 (1361)
.+||.+|++++|++++++.++|++|+.+++|++|+|||||.||.++|+|+|+..+..+||++||.+|+|+|+|+++||||
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 88999999999999999999999999999999999999999999999997777666669999999999999999999999
Q ss_pred CCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccch
Q 000671 1228 NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSV 1307 (1361)
Q Consensus 1228 ~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTI 1307 (1361)
++|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||++++|||||++++||||||+||+||+
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTv 1230 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTV 1230 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1308 RTNLDPLGLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1308 R~NLdP~~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|+|||||++|+|+|||+|||+|+-.. .---++|++.-|+|+|.|+||||||.
T Consensus 1231 R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlC 1285 (1381)
T KOG0054|consen 1231 RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLC 1285 (1381)
T ss_pred ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHH
Confidence 99999999999999999999996222 11224999999999999999999984
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-190 Score=1917.17 Aligned_cols=1320 Identities=29% Similarity=0.477 Sum_probs=1077.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCcccc-hhHHHHHHHHHHHHHHHHHH---HHHHHhhhccCCc-
Q 000671 22 GSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKN-HNYGRIRR-ECVSIVVSACCAVVGIAYLG---YCLWNLIAKNDSS- 95 (1361)
Q Consensus 22 ~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~- 95 (1361)
.||||++++++|+|++|+|+++|.+++. +++. +..++.++ .+.+....++..+.....++ .+......+....
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWL-IKKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQTSL 107 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHH-hccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 3999999999999999999999988864 3331 22222222 22222222221111111111 1111111111111
Q ss_pred ch--hHHHHHHHHHHHHHHHHHH---HHh--ccchhHHHHHHHHHH---HHHHHHHHHHHHhhhcccccccchhhhHHHH
Q 000671 96 MS--WLVSTVRGLIWVSLAISLL---VKR--SKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLL 165 (1361)
Q Consensus 96 ~~--~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1361)
.+ ........++|+.+.+.+. .++ .+...+.+++||++. +++.............. ...++..+.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 186 (1622)
T PLN03130 108 PPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFV-LYLYISEVAAQVL 186 (1622)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHHHHHHHHhccc-cceehhHHHHHHH
Confidence 11 1112223455543322222 112 233346678899887 33322222221221110 1224444444443
Q ss_pred HHHHH-hh-cccCCCCCCC------CCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcc
Q 000671 166 LLFSA-FR-NFSHFTSPNR------EDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPE 237 (1361)
Q Consensus 166 ~~~~~-~~-~~~~~~~~~~------~~~~~~~p~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~ 237 (1361)
+.+.. +. ...+...+.. ..+..++|...+.+++||++||++||++|||++|++++|||++|+.+|||+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~ 266 (1622)
T PLN03130 187 FGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTW 266 (1622)
T ss_pred HHHHHHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChh
Confidence 32222 11 1111111110 1123455555667889999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 000671 238 DEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEG 317 (1361)
Q Consensus 238 ~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g 317 (1361)
|+++.+.++|++.|+++.+ +++++++++++++|++.++..++++++.+++.+++|++++.+++++.+++ ..+.|
T Consensus 267 ~~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~-~~~~~ 340 (1622)
T PLN03130 267 DQTETLYRSFQKCWDEELK-----KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE-PAWIG 340 (1622)
T ss_pred hhHHHHHHHHHHHHHHHhc-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHH
Confidence 9999999999999987642 13478999999999999999999999999999999999999999986543 23567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHH
Q 000671 318 LSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397 (1361)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~ 397 (1361)
+.++++++++.++.+++.++|++...++++++|+++...+|+|.++++....++.++|+++|+|++|++++.+++.++|.
T Consensus 341 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~ 420 (1622)
T PLN03130 341 YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHT 420 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777888888899999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH
Q 000671 398 TWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK 477 (1361)
Q Consensus 398 ~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~ 477 (1361)
+|.+|+++++++++||..+|+++++|++++++++|++..+++++++.+++.|+.+|+|++.++|+++|||+||+|+||+.
T Consensus 421 l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~ 500 (1622)
T PLN03130 421 LWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENS 500 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 478 FKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALS 557 (1361)
Q Consensus 478 f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~ 557 (1361)
|.+++++.|++|++..++..+..++..+++...|.++++++|++|.+.+ +.+|++.+|+++++++.++.|+..+|..+.
T Consensus 501 ~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~-g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~ 579 (1622)
T PLN03130 501 FQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNLIT 579 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888777777888888888898888776 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHH
Q 000671 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1361)
Q Consensus 558 ~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKS 637 (1361)
.+.++++|++||++||..+|..+... .+.......|+++|++|+|++++++++|+|+||+|++||+++|+||+|||||
T Consensus 580 ~~~~a~~s~~RI~~~L~~~e~~~~~~--~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKS 657 (1622)
T PLN03130 580 QAVNANVSLKRLEELLLAEERVLLPN--PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKT 657 (1622)
T ss_pred HHHHHHHHHHHHHHHHcCcccccccC--CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHH
Confidence 99999999999999998776532111 1111123479999999999865456799999999999999999999999999
Q ss_pred HHHHHHhCCccCCC-cEEEEcCeEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000671 638 SLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 638 TLl~~llg~~~~~~-G~v~~~g~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1361)
||+++|+|+++|.+ |+|.++|+||||+|+||++++||||||+||.++++++|++++++|+|.+|++.+|+||+|+|||+
T Consensus 658 TLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 658 SLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred HHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeE
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1361)
|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||+++.++.||+|++|++|+|
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMI 817 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999887889999999999999999999999999999
Q ss_pred EEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCccccccccccCccchH
Q 000671 797 TQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTED 876 (1361)
Q Consensus 797 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 876 (1361)
+++|++++++++++.|.++...+....+..+ . ......++.+. .. ..+......+ +.....+...+....+.++
T Consensus 818 ~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 891 (1622)
T PLN03130 818 KEEGTYEELSNNGPLFQKLMENAGKMEEYVE-E--NGEEEDDQTSS-KP-VANGNANNLK-KDSSSKKKSKEGKSVLIKQ 891 (1622)
T ss_pred EEeCCHHHHHhcchhHHHHHHhccccccccc-c--ccccccccccc-cc-cccccccccc-ccccccccccccchhhhhH
Confidence 9999999999888888887754321110000 0 00000000000 00 0000000000 0000000000011234567
Q ss_pred HHHhhCcccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHHHHHHHH
Q 000671 877 EEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVY 953 (1361)
Q Consensus 877 e~~~~g~v~~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~---~~~~~~l~iy~~l~~~~~i~~~ 953 (1361)
|+++.|.++|++|+.|+++.++.+.+++++++.+...++..+.++|++.|.+... .....|+++|++++++..++.+
T Consensus 892 e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~ 971 (1622)
T PLN03130 892 EERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTL 971 (1622)
T ss_pred HHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998666555555555666667778889999999986421 2245678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1361)
Q Consensus 954 ~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~ 1033 (1361)
++.++....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++++++++++
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~ 1051 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIV 1051 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHH
Q 000671 1034 TWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH 1113 (1361)
Q Consensus 1034 ~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~ 1113 (1361)
+|..+++++|+.+++++++++|.+++|+++|+++++++|+++|++|+++|++|||||+++++|.+++.+..|.+.+..+.
T Consensus 1052 ~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~ 1131 (1622)
T PLN03130 1052 STISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLV 1131 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000671 1114 TNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY-----VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1361)
Q Consensus 1114 ~~~~~~wl~~rl~~l~~l~~~~~~~~~vl~~~g~-----is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~ 1188 (1361)
....++|++.++++++.+++++.+.+.+.. .+. ..++.+|++++|++.++.++.++++.++++|+.++|+||+.
T Consensus 1132 ~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~ 1210 (1622)
T PLN03130 1132 NMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1210 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877665555443322 221 22688999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 000671 1189 QFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1361)
Q Consensus 1189 e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~e 1268 (1361)
+|++.|+|++...++..+++.||.+|.|+|+||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+||
T Consensus 1211 e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1211 TYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred HHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 99999988765434445667899999999999999999887789999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCC---CCCCcccccCCch
Q 000671 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNS---RNSRIDIDFPTFN 1345 (1361)
Q Consensus 1269 p~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~---~~~~~~~~~~~~~ 1345 (1361)
|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|||||+||++|+-. .+-.-|+|++-++
T Consensus 1291 p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1291 LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999632 1222478999999
Q ss_pred hhhhhcccccccee
Q 000671 1346 KFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1346 ~~~~~~~~~~~~~~ 1359 (1361)
+|.|+|.|||||+.
T Consensus 1371 ~G~nLSgGQrQrla 1384 (1622)
T PLN03130 1371 AGENFSVGQRQLLS 1384 (1622)
T ss_pred CCCCCCHHHHHHHH
Confidence 99999999999974
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-185 Score=1874.73 Aligned_cols=1147 Identities=31% Similarity=0.529 Sum_probs=1001.7
Q ss_pred ccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHH
Q 000671 194 EKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITN 273 (1361)
Q Consensus 194 ~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~ 273 (1361)
+..++||+++|++||++|||++|++++|||++|+.+|||+|+++|+++.+.++|++.|+++.+ .+++++++++++
T Consensus 223 ~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~ 297 (1495)
T PLN03232 223 GENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESR-----RPKPWLLRALNN 297 (1495)
T ss_pred cCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhc-----cCCchHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999987542 135789999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 274 VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSAL 353 (1361)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l 353 (1361)
+|++.++..++++++.+++.+++|++++.+++++++++ +.+.|+.++++++++.++.+++.++|++...+++.++|+.+
T Consensus 298 ~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l 376 (1495)
T PLN03232 298 SLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD-PAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTL 376 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986543 23457888888888888888888899999999999999999
Q ss_pred HHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 354 MVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLL 433 (1361)
Q Consensus 354 ~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l 433 (1361)
...+|+|.++++....++.++|+++|+|++|++++.++..++|.+|..|++++++++++|+.+|+++++|++++++++|+
T Consensus 377 ~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl 456 (1495)
T PLN03232 377 VAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPL 456 (1495)
T ss_pred HHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999998888889999999999999999999899999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 434 NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTI 513 (1361)
Q Consensus 434 ~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~ 513 (1361)
+..+++++++.+++.++.+|+|.+.++|+++|||+||+|+||+.+.+++++.|++|++..++.....++..+++...|.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1495)
T PLN03232 457 QTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVV 536 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887777777777777887
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCC
Q 000671 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDR 593 (1361)
Q Consensus 514 v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~ 593 (1361)
+++++|++|.+.+ +++|++.+|+++++++.+..|+..+|..+..+.++++|++||++||+.+|..++.. .+......
T Consensus 537 ~~~~~fg~~~v~~-~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~ 613 (1495)
T PLN03232 537 VTLVSFGVFVLLG-GDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPLQPGAP 613 (1495)
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCcCCCCC
Confidence 7778888887775 78999999999999999999999999999999999999999999998765321110 11112234
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcE-EEEcCeEEEEecCCcCCCC
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSG 672 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~-v~~~g~iayv~Q~~~i~~~ 672 (1361)
.|+++|++|+|++++++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|. +.++++||||+|+||++++
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~g 693 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccc
Confidence 799999999998654568999999999999999999999999999999999999999975 5678999999999999999
Q ss_pred CHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q 000671 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1361)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~ 752 (1361)
||||||+||.++++++|++++++|+|.+|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||+
T Consensus 694 TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~ 773 (1495)
T PLN03232 694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773 (1495)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCC
Q 000671 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNA 832 (1361)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1361)
+++++++++++.+.+++||+|+|||+++.++.||+|++|++|+|+++|+++|++++++.|.++.+.+.......+ . .
T Consensus 774 ~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~-~-~- 850 (1495)
T PLN03232 774 HVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQE-V-N- 850 (1495)
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccccc-c-c-
Confidence 999999999988777899999999999999999999999999999999999999888888887754332110000 0 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCccccccccccCccchHHHHhhCcccHHHHHHHHHhccchhHHHHHHHHHHHH
Q 000671 833 GQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGF 912 (1361)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~l~~~~~~~~ 912 (1361)
.+.+...... +...... ..+.....+...+....+.++|+++.|.++|++|++|+++.++++.+.+++++.+..
T Consensus 851 --~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~ 924 (1495)
T PLN03232 851 --TNDENILKLG---PTVTIDV-SERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTT 924 (1495)
T ss_pred --cccccccccc---ccccccc-cccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 0000000000 0000000 000000000000011234677888999999999999999877655555555566666
Q ss_pred HHHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 000671 913 VGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDST 989 (1361)
Q Consensus 913 ~~~~~~~~~wl~~~~~~~~---~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~t 989 (1361)
.++..+.++|++.|.+... ....+|+++|++++++..++.+++.++....+.++++++|++++++++++|++|||++
T Consensus 925 ~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~ 1004 (1495)
T PLN03232 925 EVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN 1004 (1495)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC
Confidence 7777889999999986431 2346789999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000671 990 PVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTT 1069 (1361)
Q Consensus 990 p~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~ 1069 (1361)
|+|+|+|||++|++.+|..++..+..++..++.+++++++++++++..+++++|+.+++++++.+|.+++|+++|.++.+
T Consensus 1005 ~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 1084 (1495)
T PLN03232 1005 PTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVT 1084 (1495)
T ss_pred CchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888888888888877777777887777888899999999999999999
Q ss_pred cchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-
Q 000671 1070 KAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYV- 1148 (1361)
Q Consensus 1070 ~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~vl~~~g~i- 1148 (1361)
++|+++|++|+++|++|||+|+++++|.+++.+..|.+.+..+.....++|+..++++++.+++++.+.+.+. ..+.+
T Consensus 1085 ~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~-~~~~~~ 1163 (1495)
T PLN03232 1085 RSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVL-RNGNAE 1163 (1495)
T ss_pred cChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccccc
Confidence 9999999999999999999999999999999999999999999888899999999988876655444433332 22322
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEE
Q 000671 1149 ----APGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224 (1361)
Q Consensus 1149 ----s~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~ 1224 (1361)
.++.+|++++|+.+++.+++++++.++++|+.++|+||+.+|++.|+|++...++..+++.||.+|+|+|+||+|+
T Consensus 1164 ~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~ 1243 (1495)
T PLN03232 1164 NQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLR 1243 (1495)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEE
Confidence 2567889999999999999999999999999999999999999998886543333345667999999999999999
Q ss_pred eCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccc
Q 000671 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304 (1361)
Q Consensus 1225 Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~ 1304 (1361)
|+++.++||||+||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+
T Consensus 1244 Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~ 1323 (1495)
T PLN03232 1244 YRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS 1323 (1495)
T ss_pred ECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeC
Confidence 99887789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCCCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1305 GSVRTNLDPLGLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1305 GTIR~NLdP~~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||||+||||+++++|||||+||++|+-.. +---|+|++-+++|+|+|.|||||+.
T Consensus 1324 gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrla 1381 (1495)
T PLN03232 1324 GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLS 1381 (1495)
T ss_pred ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHH
Confidence 99999999999999999999999996321 22237899999999999999999974
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.1e-184 Score=1868.20 Aligned_cols=1331 Identities=30% Similarity=0.502 Sum_probs=1075.8
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 000671 18 EFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRREC---VSIVVSACCAVVGIAYLGYCLWNLIAKNDS 94 (1361)
Q Consensus 18 ~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1361)
.||| ||||+++++.|+|+.++++++|+.++. +++++ ....++++ .+.....+...+.++.+.+.+|........
T Consensus 20 ~~d~-t~~f~~~~~~~~p~~~~~~~~~~~~~~-l~~~~-~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1522)
T TIGR00957 20 NPDF-TKCFQNTVLAWVPCFYLWVCFPCYFLY-LSRHD-RGYIQMTHLNKTKTALGFLLWIVCWADLFYSFWERSHGRAP 96 (1522)
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHHHHHHHHH-hhccC-CCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3678 999999999999999999999987763 33222 12122222 222222222222222233334432111111
Q ss_pred -cchhHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHH-HHHHHHhhhcc---cccccchhhhHHHHHH
Q 000671 95 -SMSWLVSTVRGLIWVSLAISLLVKRS--KWIRMLITLWWMSFSLLVLA-LNIEILARTYT---INVVYILPLPVNLLLL 167 (1361)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 167 (1361)
.......++..++|+...+....++. ..++..+..||++..++... .+......... ...+....+...+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1522)
T TIGR00957 97 APVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALV 176 (1522)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHH
Confidence 11123334455555433222222222 22345677888876654322 11111111100 0111111112221111
Q ss_pred HHHhhcccCCCCCCCCCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHH
Q 000671 168 FSAFRNFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKF 247 (1361)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f 247 (1361)
+..+..... . +.....++...+.+++||++||++||++|||++|++++|||++|+.+|||+++++++++.++++|
T Consensus 177 ~~~~~~~~~--~---~~~~~~~~~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~ 251 (1522)
T TIGR00957 177 LSQLVLSCF--S---DKSPLFSETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVL 251 (1522)
T ss_pred HHHHHHHhh--c---CCCCccccccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHH
Confidence 111111000 0 00000011011234689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc------------------------------------CCCCCchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000671 248 AYAWDSLVRENN------------------------------------SNNNGNLVRKVITNVYLKENIFIAICALLRTI 291 (1361)
Q Consensus 248 ~~~w~~~~~~~~------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 291 (1361)
++.|+++.++.. ++.++++++++++++||+.++..++++++.++
T Consensus 252 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~ 331 (1522)
T TIGR00957 252 VENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDL 331 (1522)
T ss_pred HHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999997642110 01234679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 000671 292 AVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKK 371 (1361)
Q Consensus 292 ~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~ 371 (1361)
+.+++|++++.+++|+.+++.+.+.|+.++++++++.++.+++.++|+|...++|+++|++|.+.||+|+|+++...+++
T Consensus 332 ~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~ 411 (1522)
T TIGR00957 332 MMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKS 411 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC
Confidence 99999999999999987654455678999999999999999999999999999999999999999999999999998889
Q ss_pred CCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 372 HSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIA 451 (1361)
Q Consensus 372 ~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~ 451 (1361)
.++|+++|+|++|++++.++..++|.+|..|+++++++++||..+|+++++|++++++++|++..+++.++++++++|+.
T Consensus 412 ~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1522)
T TIGR00957 412 STVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKS 491 (1522)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Q 000671 452 QDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTG-SAPL 530 (1361)
Q Consensus 452 ~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~-~~~L 530 (1361)
+|+|++.++|+++|||+||+|+||+.|.+++++.|++|++.+++..+...+..+.++..|.++.+++|++|.+.. ++.+
T Consensus 492 ~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 571 (1522)
T TIGR00957 492 KDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNIL 571 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999988888777777777889888888888887764 4689
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccc-cCCCCcEEEEeeEEEeCCCCC
Q 000671 531 NASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL-QKSDRSVKIQEGNFSWDPELA 609 (1361)
Q Consensus 531 t~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~-~~~~~~i~~~~~~f~~~~~~~ 609 (1361)
+++.+|+++++++.++.|+..+|..+..+.++++|++||++||+.+|.++...+.... +.....|+++|++|+|+++ +
T Consensus 572 ~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~ 650 (1522)
T TIGR00957 572 DAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-L 650 (1522)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-C
Confidence 9999999999999999999999999999999999999999999877654322111111 1122479999999999753 3
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCCCCHHHHhhcCCCCCHHHH
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~ 689 (1361)
+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+||||||+||++++||+|||.||.++++++|
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 730 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYY 730 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHH--Hhc
Q 000671 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM--AAL 767 (1361)
Q Consensus 690 ~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~--~~~ 767 (1361)
++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++||++||||||||||+++++++++.+.. +..
T Consensus 731 ~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~ 810 (1522)
T TIGR00957 731 QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810 (1522)
T ss_pred HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874 456
Q ss_pred CCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHHHhhhhccCCCCCCC--CC--CCCccc--cc
Q 000671 768 EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDN--AG--QGGAEK--VE 841 (1361)
Q Consensus 768 ~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~--~~ 841 (1361)
+++|+|+|||+++.++.||+|++|++|+++++|+++++.++++.+.++...+....+.....+. .. ..+.+. .+
T Consensus 811 ~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1522)
T TIGR00957 811 KNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIE 890 (1522)
T ss_pred cCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999999998877787776543211110000000 00 000000 00
Q ss_pred c--------ccCCCC----CCCCCCCC-CCCCcccc----ccccccCccchHHHHhhCcccHHHHHHHHHhccchhHHHH
Q 000671 842 K--------GRTARP----EEPNGIYP-RKESSEGE----ISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCL 904 (1361)
Q Consensus 842 ~--------~~~~~~----~~~~~~~~-~~~~~~~~----~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~l 904 (1361)
. ...... ........ ....+..+ ...+...++.++|+++.|.|++++|+.|+++.+ +..+++
T Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~ 969 (1522)
T TIGR00957 891 NGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LFITFL 969 (1522)
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcC-HHHHHH
Confidence 0 000000 00000000 00000000 000011234567788899999999999999754 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000671 905 GVLAQSGFVGLQAAATYWLAYAIQIPK-----ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIF 979 (1361)
Q Consensus 905 ~~~~~~~~~~~~~~~~~wl~~~~~~~~-----~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il 979 (1361)
.+++.++..++..+.++|+++|.+... ....+++++|++++++..++.+++.++....+.++++++|++++++++
T Consensus 970 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 1049 (1522)
T TIGR00957 970 SIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKL 1049 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667778899999999986421 123467789999999999999998899999999999999999999999
Q ss_pred cCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 980 KAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATA 1059 (1361)
Q Consensus 980 ~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~s 1059 (1361)
++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|.++++++|+++++++++++|.+++
T Consensus 1050 ~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1522)
T TIGR00957 1050 RSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASS 1129 (1522)
T ss_pred cCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899888888888888889999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1060 RELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF 1139 (1361)
Q Consensus 1060 r~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~ 1139 (1361)
|+++|++.++++|+++|++|+++|++|||||++|++|.+++.+..|.+.++.+.....++|+..++++++.+++++++.+
T Consensus 1130 r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1209 (1522)
T TIGR00957 1130 RQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALF 1209 (1522)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887655544443
Q ss_pred hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEE
Q 000671 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219 (1361)
Q Consensus 1140 ~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~ 1219 (1361)
.+ ...+.+++|.+|++++|+.++..++.++++.++++|+.++|+||+.+|++.|+|++...++..+++.||.+|+|+|+
T Consensus 1210 ~v-~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~ 1288 (1522)
T TIGR00957 1210 AV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFR 1288 (1522)
T ss_pred HH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEE
Confidence 33 23678999999999999999999999999999999999999999999999888865333344566789999999999
Q ss_pred EEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCc
Q 000671 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299 (1361)
Q Consensus 1220 nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQd 1299 (1361)
||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++||||
T Consensus 1289 nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQd 1368 (1522)
T TIGR00957 1289 NYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQD 1368 (1522)
T ss_pred EEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCC
Confidence 99999988777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1300 PTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1300 p~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|+||+||||+||||+++++|||||+||++|+-.. +---|+|++-+++|.|+|.|||||+.
T Consensus 1369 p~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~ 1431 (1522)
T TIGR00957 1369 PVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC 1431 (1522)
T ss_pred CcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHH
Confidence 9999999999999999999999999999996321 11136899999999999999999974
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6e-174 Score=1757.19 Aligned_cols=1150 Identities=27% Similarity=0.442 Sum_probs=988.5
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhh
Q 000671 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYL 276 (1361)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1361)
.+||++||++||++|||++|++++|||++|+.+|||+|+++++++.+.++|++.|+++.+++ .+.++++++++++|+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~L~~~l~~~~~ 79 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASA---KKNPKLLNALRRCFF 79 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhcc---CCCChHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998764321 245789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 277 KENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1361)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~ 355 (1361)
+.++..++++++.+++.+++|++++.+++|++..+. ..+.|+.++++++++.++.+++.++++|...++++++|++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~ 159 (1490)
T TIGR01271 80 WRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFS 159 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999853322 2356888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNV 435 (1361)
Q Consensus 356 ~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l~~ 435 (1361)
+||+|+|+++..+.++.++|+++|+|++|++++.+++.++|.+|..|+++++++++||.++|+++++|++++++++|++.
T Consensus 160 ~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~ 239 (1490)
T TIGR01271 160 LIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQA 239 (1490)
T ss_pred HHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 436 PFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIIS 515 (1361)
Q Consensus 436 ~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~ 515 (1361)
++++.+.++++++|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++.+++..+...+..++++..|.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1490)
T TIGR01271 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVV 319 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887777788888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCc
Q 000671 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVR-MIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1361)
Q Consensus 516 ~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~-~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1361)
+++|++|.+.+ .++++.+||++++|++++.|+. .+|..+..+.++.+|++||++||..+|.++... ......
T Consensus 320 ~~~f~~y~~~~--~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~-----~~~~~~ 392 (1490)
T TIGR01271 320 FLSVVPYALIK--GIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY-----NLTTTE 392 (1490)
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc-----cCCCCc
Confidence 99999888774 3789999999999999999985 799999999999999999999998877643111 112346
Q ss_pred EEEEeeEEEeCCCC-------------------------------CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHH
Q 000671 595 VKIQEGNFSWDPEL-------------------------------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-------------------------------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l 643 (1361)
|+++|++|+|+... .+++|+|+||+|++||+++|+|||||||||||++|
T Consensus 393 i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l 472 (1490)
T TIGR01271 393 VEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472 (1490)
T ss_pred eEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999996310 13689999999999999999999999999999999
Q ss_pred hCCccCCCcEEEEcCeEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 644 LGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 644 lg~~~~~~G~v~~~g~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
+|+++|++|+|.++|+||||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|+||+|++|++|.+||||
T Consensus 473 ~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgG 552 (1490)
T TIGR01271 473 MGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGG 552 (1490)
T ss_pred hCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChH
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||||+||||+|++||+|||||||||||+++++++++.|+....+++|+|+|||+++.++.||+|++|++|++++.|+++
T Consensus 553 qkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~ 632 (1490)
T TIGR01271 553 QRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFS 632 (1490)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999998887777899999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHHHhhh--h------------------ccCCC-----CCCC-----C-CCCCcc--------------
Q 000671 804 ELLLAGTAFEQLVNAHRD--A------------------ITGLG-----PLDN-----A-GQGGAE-------------- 838 (1361)
Q Consensus 804 ~l~~~~~~~~~~~~~~~~--~------------------~~~~~-----~~~~-----~-~~~~~~-------------- 838 (1361)
++...+..+.+....... . ..... +.+. + .....+
T Consensus 633 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1490)
T TIGR01271 633 ELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASA 712 (1490)
T ss_pred HHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 998766555554421100 0 00000 0000 0 000000
Q ss_pred ----------------c-cc-c-ccC---------------CCCCCCC---------CCC------CCC-------C-C-
Q 000671 839 ----------------K-VE-K-GRT---------------ARPEEPN---------GIY------PRK-------E-S- 860 (1361)
Q Consensus 839 ----------------~-~~-~-~~~---------------~~~~~~~---------~~~------~~~-------~-~- 860 (1361)
. .+ . ... ..++... ... ... . .
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1490)
T TIGR01271 713 RKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQL 792 (1490)
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 0 00 0 000 0000000 000 000 0 0
Q ss_pred -----------------cc--------ccc-----cc-----cccCccchHHHHhhCcccHHHHHHHHHhccchhHHHHH
Q 000671 861 -----------------SE--------GEI-----SV-----KGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLG 905 (1361)
Q Consensus 861 -----------------~~--------~~~-----~~-----~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~l~ 905 (1361)
.+ .+. .. +....+.++|+++.|.++|++|+.|+++.+++..++++
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~ 872 (1490)
T TIGR01271 793 QTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIF 872 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHH
Confidence 00 000 00 00012355678889999999999999977665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---------CC-------------chhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 906 VLAQSGFVGLQAAATYWLAYAIQIP---------KI-------------TSGIL-IGVYAGVSTASAVFVYFRSFFAAHL 962 (1361)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~---------~~-------------~~~~~-l~iy~~l~~~~~i~~~~~~~~~~~~ 962 (1361)
+++.++.+++..+.++|+..|.... +. ...+| +++|++++++..++.+++.+++.+.
T Consensus 873 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1490)
T TIGR01271 873 CLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHT 952 (1490)
T ss_pred HHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667788889999998886411 00 11223 4566666666677788899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000671 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042 (1361)
Q Consensus 963 ~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~i 1042 (1361)
+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|.++++++
T Consensus 953 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~ 1032 (1490)
T TIGR01271 953 LLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAI 1032 (1490)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000671 1043 FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLI 1122 (1361)
Q Consensus 1043 p~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1122 (1361)
|+++++++++++|.+++|+++|++..+++|+++|+.|+++|+.|||||+++++|.+++.+..|.+.+.++.....++|+.
T Consensus 1033 ~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1112 (1490)
T TIGR01271 1033 PVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQ 1112 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCC
Q 000671 1123 LRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202 (1361)
Q Consensus 1123 ~rl~~l~~l~~~~~~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~ 1202 (1361)
.++++++.+.++.++++++. ...+++|.+|++++|++++..++.++++.++++|+.++|+||+.+|++.|+|++...+
T Consensus 1113 ~~~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~ 1190 (1490)
T TIGR01271 1113 MRIDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSG 1190 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 99998876654443333222 2346788999999999999999999999999999999999999999998887543211
Q ss_pred --------------CCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 000671 1203 --------------DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1361)
Q Consensus 1203 --------------~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~e 1268 (1361)
...+|+.||.+|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++
T Consensus 1191 ~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~ 1270 (1490)
T TIGR01271 1191 GGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS 1270 (1490)
T ss_pred cccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 113455799999999999999999887889999999999999999999999999999999999998
Q ss_pred CCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC---CCCcccccCCch
Q 000671 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFN 1345 (1361)
Q Consensus 1269 p~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~ 1345 (1361)
.+|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++++-.. +..=|+|++.++
T Consensus 1271 -~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e 1349 (1490)
T TIGR01271 1271 -TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD 1349 (1490)
T ss_pred -CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999996421 222368999999
Q ss_pred hhhhhcccccccee
Q 000671 1346 KFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1346 ~~~~~~~~~~~~~~ 1359 (1361)
.|+|+|.|||||+.
T Consensus 1350 ~G~nLSgGQrQrL~ 1363 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMC 1363 (1490)
T ss_pred CCCcCCHHHHHHHH
Confidence 99999999999974
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.5e-165 Score=1674.64 Aligned_cols=1160 Identities=28% Similarity=0.436 Sum_probs=981.2
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhc-----------------
Q 000671 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENN----------------- 259 (1361)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~----------------- 259 (1361)
+.||++|||+.++++.|++|++.+..|..|+++|+|+...+.|+-+...++.+..++...++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1560)
T PTZ00243 59 PVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDAS 138 (1560)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecccc
Confidence 468999999999999999999999999999999999999999997766666554433221100
Q ss_pred ----------------------------------C---------------------------------------------
Q 000671 260 ----------------------------------S--------------------------------------------- 260 (1361)
Q Consensus 260 ----------------------------------~--------------------------------------------- 260 (1361)
.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1560)
T PTZ00243 139 SRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSSTG 218 (1560)
T ss_pred ccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecccc
Confidence 0
Q ss_pred ---------CCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Q 000671 261 ---------NNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVE 331 (1361)
Q Consensus 261 ---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~ 331 (1361)
+++..+++++++++|++.++..++++++.+++.+++|++++.+++|+++++.....|+.++++++++.+++
T Consensus 219 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~ 298 (1560)
T PTZ00243 219 SVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQ 298 (1560)
T ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 00112589999999999999999999999999999999999999999765545556888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 000671 332 SFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAI 409 (1361)
Q Consensus 332 ~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~--~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~ 409 (1361)
+++.++|+|...+.++++|++|.+.||+|+++++..+.. +.++|+++|+|++|++++.+++.++|.+|.+|+++++++
T Consensus 299 ~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~ 378 (1560)
T PTZ00243 299 SVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSI 378 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999886654 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHH
Q 000671 410 GVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKE 489 (1361)
Q Consensus 410 ~~L~~~lG~~~l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~E 489 (1361)
++||.++||++++|++++++++|++.++++.+.++++++|+.+|+|++.++|+++|||+||+||||+.|.++|++.|++|
T Consensus 379 ~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~E 458 (1560)
T PTZ00243 379 LLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARE 458 (1560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1361)
Q Consensus 490 l~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI 569 (1361)
++.+++..+..++..++++.+|.++.+++|++|++.+ ++||++++||++++|+.++.|+.++|..++.+.++++|++||
T Consensus 459 l~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g-~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 459 LRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLG-HELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888999999999999998886 889999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCch---hhh--------c------------------c-----------------------------ccCC
Q 000671 570 NAFLLDHELNNDD---VRR--------I------------------S-----------------------------LQKS 591 (1361)
Q Consensus 570 ~~fL~~~e~~~~~---~~~--------~------------------~-----------------------------~~~~ 591 (1361)
++||..+|.+... .+. . + ....
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 9999877632100 000 0 0 0001
Q ss_pred CCcEEEEeeEEEeCCC-------------------------------------CCCCcccceeEEecCCeEEEEeCCCCC
Q 000671 592 DRSVKIQEGNFSWDPE-------------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~-------------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~Gs 634 (1361)
...+.++|++|+|+.. .++++|+|+||+|++||+++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 1246677777765310 124589999999999999999999999
Q ss_pred CHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCcccc
Q 000671 635 GKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1361)
Q Consensus 635 GKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig 714 (1361)
||||||++|+|+++|++|+|.++++|||+||+||++++||+|||.|+.++++++|++++++|++++|++.+|+|++|.+|
T Consensus 698 GKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~ 777 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777 (1560)
T ss_pred cHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhc
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCC
Q 000671 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1361)
Q Consensus 715 ~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1361)
++|.+|||||||||+||||+|++||+||||||||+||++++++++++++....+|+|+|++||+++.++.||+|++|++|
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G 857 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDG 857 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999998876666799999999999999999999999999
Q ss_pred eEEEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC-CCccccccccccCcc
Q 000671 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRK-ESSEGEISVKGLTQL 873 (1361)
Q Consensus 795 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 873 (1361)
++.++|+++++.+.+ .+.++........+..+...+......+. .................. .............++
T Consensus 858 ~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 858 RVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDA-APGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935 (1560)
T ss_pred EEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccc-cccccccccccccccccccccccccccccccchh
Confidence 999999999998653 45555433211110000000000000000 000000000000000000 000000000111345
Q ss_pred chHHHHhhCcccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHHHHH
Q 000671 874 TEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK-ITSGILIGVYAGVSTASAVFV 952 (1361)
Q Consensus 874 ~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~~~l~iy~~l~~~~~i~~ 952 (1361)
.++|+++.|.++|++|+.|++..++...+++.+++.+...++....++|++.|.+... .....|+++|+++.++..++.
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~~ 1015 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSV 1015 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHHH
Confidence 6778888999999999999998766555544455555556777888999999986431 234567888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 953 YFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF 1032 (1361)
Q Consensus 953 ~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~ 1032 (1361)
+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++
T Consensus 1016 ~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~ 1095 (1560)
T PTZ00243 1016 PLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSA 1095 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHH
Q 000671 1033 VTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFF 1112 (1361)
Q Consensus 1033 ~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~ 1112 (1361)
.+|.++++++|++++++++.++|.+.+|+++|.++.+++|++++++|+++|+.|||+|+++++|.+++.+..|.+.++.+
T Consensus 1096 ~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~ 1175 (1560)
T PTZ00243 1096 SQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSY 1175 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 99988877888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000671 1113 HTNGVMEWLILRVEALQNLTLFTAALFLV---LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1361)
Q Consensus 1113 ~~~~~~~wl~~rl~~l~~l~~~~~~~~~v---l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e 1189 (1361)
.....++|+..+.++++++.+++++++++ ....+.+++|.++++++|+.++..++.++++.++++|+.++|+|||.+
T Consensus 1176 ~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~ 1255 (1560)
T PTZ00243 1176 LENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLY 1255 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776555444432 223456789999999999999999999999999999999999999999
Q ss_pred hhcC-CCCCCCC-----------------------CCCCCCC---CCCCCcceEEEEEEEEEeCCCCCCccccceEEeeC
Q 000671 1190 FMHI-PPEPPAI-----------------------VEDKRPP---SSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSE 1242 (1361)
Q Consensus 1190 ~~~~-~~E~~~~-----------------------~~~~~~~---~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~ 1242 (1361)
|++. |+|+... .++..++ +.||.+|.|+|+||+|+|+++.++|||||||+|+|
T Consensus 1256 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~ 1335 (1560)
T PTZ00243 1256 YTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAP 1335 (1560)
T ss_pred HHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECC
Confidence 9963 4432110 0011122 23567899999999999998878899999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCCCCCHHHH
Q 000671 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322 (1361)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI 1322 (1361)
|||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+||
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI 1415 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEV 1415 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1323 WKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1323 ~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|+||++|+-.. +---|+|+..++.|.|+|.|||||+.
T Consensus 1416 ~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLa 1455 (1560)
T PTZ00243 1416 WAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMC 1455 (1560)
T ss_pred HHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHH
Confidence 99999996321 22236899999999999999999974
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-121 Score=1147.14 Aligned_cols=1064 Identities=21% Similarity=0.263 Sum_probs=788.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCC--cc---h-HHHHHHHHHHHHHHHHHHH-HHH
Q 000671 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN---RGE--EN---L-QEGLSIVGCLIITKVVESF-TQR 336 (1361)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~---~~~--~~---~-~~g~~~~~~l~~~~~~~~~-~~~ 336 (1361)
+++....+-+.++++..+..+...+.+..+|++...+.+..+ ... .. . ..++.+. .+.+..++.++ ...
T Consensus 15 ~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~-~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 15 FFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFV-YLGVGVFISGFIQVS 93 (1228)
T ss_pred hHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 444444455778888888888999999999998755443221 111 11 1 1122222 22222233333 346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-----HHHHHHHHHHHHHHHHHH
Q 000671 337 HCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-----WFHLTWSLALQLFLAIGV 411 (1361)
Q Consensus 337 ~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-----~~~~~w~~plqi~va~~~ 411 (1361)
+|.+.+.|...|+|..+..++.||...+.+. +++|++++.|+.|+++|+|.+. ++|.+-....-++++++.
T Consensus 94 c~~~~geRq~~riR~~yl~~iLrQdi~~fD~----~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAILRQDIGWFDT----NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccceeec----ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999874 4459999999999999887543 455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHH
Q 000671 412 LFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFK 491 (1361)
Q Consensus 412 L~~~lG~~~l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~ 491 (1361)
.| .+.. +++.+..++......+++.+.+...+.++...+.-++++|++++||+|-.|+-|+...++-.+.=+.-.|
T Consensus 170 ~W-~Ltl---v~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k 245 (1228)
T KOG0055|consen 170 GW-KLTL---VMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALK 245 (1228)
T ss_pred HH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHH
Confidence 33 3333 3333222233334556788888888888888899999999999999999999998765554332222222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 492 W-LSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRIN 570 (1361)
Q Consensus 492 ~-l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~ 570 (1361)
. +|+..+......+.+++.-....+..|.+..++..+..+++.+|+++...-.....|.+..+.+..+.+|+++..+|.
T Consensus 246 ~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~ 325 (1228)
T KOG0055|consen 246 FGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIF 325 (1228)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHH
Confidence 2 222222222222233333333344455554444447899999999988777778889999999999999999999999
Q ss_pred HHhccc-CCCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC
Q 000671 571 AFLLDH-ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 571 ~fL~~~-e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~ 649 (1361)
+-++.. +.++.+.........++.|+++|+.|+|+.+++.++|+|+||+|++|+.+++||+|||||||++++|.|+++|
T Consensus 326 ~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP 405 (1228)
T KOG0055|consen 326 ETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP 405 (1228)
T ss_pred HHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 988643 3333222222334467899999999999999888999999999999999999999999999999999999999
Q ss_pred CCcEEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccC
Q 000671 650 ISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715 (1361)
Q Consensus 650 ~~G~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~ 715 (1361)
++|+|.++| +||.|+|+|.+|+.||+|||.||+| ...++..+++++....+.+..+|+|++|.+||
T Consensus 406 ~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge 485 (1228)
T KOG0055|consen 406 TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGE 485 (1228)
T ss_pred CCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccC
Confidence 999999998 5999999999999999999999996 56888999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCe
Q 000671 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1361)
Q Consensus 716 ~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1361)
+|..|||||||||||||||.+||+||||||||||||++.++.+ ++.++...+|+|.|+|+|+++.+++||+|++|++|+
T Consensus 486 ~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~ 564 (1228)
T KOG0055|consen 486 RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGK 564 (1228)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCE
Confidence 9999999999999999999999999999999999999998865 667788889999999999999999999999999999
Q ss_pred EEEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC-CCccccc--cccccCc
Q 000671 796 ITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRK-ESSEGEI--SVKGLTQ 872 (1361)
Q Consensus 796 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 872 (1361)
|+|.|+|+||++.++.|.++++.+.....+.+.+++++. .++......... ......+.. .....+. ..++...
T Consensus 565 IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~--~~~~~~s~~~s~-~~~~~~~~~~~~~~~~~~~~~e~~~~ 641 (1228)
T KOG0055|consen 565 IVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESL--KEERSRSLKSSS-SSPSLSRGSNRSNLLSVKPEGEDPEE 641 (1228)
T ss_pred EEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccch--hhhhhhcccccc-ccccccCCcccccccccccccccccc
Confidence 999999999999999999999876533221110000000 000000000000 000000000 0000000 0000000
Q ss_pred cchHHHHhhCcccHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-C---CchhHHHHHHHH
Q 000671 873 LTEDEEMEIGDVGWKPFMDYLNVSK-GMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI----P-K---ITSGILIGVYAG 943 (1361)
Q Consensus 873 l~~~e~~~~g~v~~~~y~~y~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~----~-~---~~~~~~l~iy~~ 943 (1361)
...+|+ -.++ +++.++..+ .|..+++++++.++..+..+...+.++...+. + + .....|..+|++
T Consensus 642 ~~~~~~---~~~s---~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~ 715 (1228)
T KOG0055|consen 642 PVSEED---EKVS---FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLG 715 (1228)
T ss_pred cccccc---cccc---HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 000011 1233 444444433 46666677777776666666666666654321 1 1 112347788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHH
Q 000671 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021 (1361)
Q Consensus 944 l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~--tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~ 1021 (1361)
++++..++.+++.+++...|.+..+++|..+|+++++.+++|||. |. |+|.+|+++|...+...+...+..+++++.
T Consensus 716 l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~ 794 (1228)
T KOG0055|consen 716 LGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIA 794 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997 56 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHH
Q 000671 1022 ELLAIIGIMTFVTWQVLVVAI---FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQ 1098 (1361)
Q Consensus 1022 ~~i~~i~v~~~~~~~l~lv~i---p~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~ 1098 (1361)
.+++.+++.++.+|+++++++ |++.+..+.+.+++.. ..+.+............|++++++||++|+.|++|++
T Consensus 795 ~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~---~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~ 871 (1228)
T KOG0055|consen 795 AVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKG---FSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFME 871 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Confidence 999999999999999987765 5554444554444432 2222333333456788999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1099 NYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF----LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWY 1174 (1361)
Q Consensus 1099 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~----~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~ 1174 (1361)
.|.+.++...+..+... .|-++...+-.++..+.-++. .+++..|.+++..+-..+.-...-...+.......
T Consensus 872 ~y~~~l~~p~~~~~~~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~ 948 (1228)
T KOG0055|consen 872 LYKEELEKPRKSSFKRG---LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYA 948 (1228)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999988777665443 333444333333333332222 35667888888876655544444444556667778
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEe--CCCCCCccccceEEeeCCcEEEEEcCC
Q 000671 1175 CYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRT 1252 (1361)
Q Consensus 1175 ~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y--~~~~~~VLk~Isf~I~~GekVgIVGrT 1252 (1361)
.++-++..|+.+|++.++.+++-+...+.. ....+.+|+|+|+||+|+| ||+- +||+|+|++|++||+||+||+|
T Consensus 949 Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~-~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 949 PDISKAKIAAGSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDV-PVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCc-hhhcCCcEEecCCCEEEEECCC
Confidence 899999999999999999877432211111 1112478999999999999 4555 4999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCc-
Q 000671 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTP- 1330 (1361)
Q Consensus 1253 GSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~- 1330 (1361)
||||||++.+|.|||||.+|.|.|||+||++++++.||++|++|.|||.||++||||||... .+.|.+||.+|++.|.
T Consensus 1026 GsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANa 1105 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANA 1105 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999855 2479999999999983
Q ss_pred --CCCCCCcccccCCchhhhhhcccccccee
Q 000671 1331 --NSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1331 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
--.+--=|.|+++++.|-.+|.|||||+.
T Consensus 1106 H~FI~sLP~GyDT~vGerG~QLSGGQKQRIA 1136 (1228)
T KOG0055|consen 1106 HNFISSLPQGYDTRVGERGVQLSGGQKQRIA 1136 (1228)
T ss_pred HHHHhcCcCcccCccCcccCcCCchHHHHHH
Confidence 12233337899999999999999999974
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.3e-110 Score=1126.14 Aligned_cols=1076 Identities=16% Similarity=0.142 Sum_probs=739.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 274 VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSAL 353 (1361)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l 353 (1361)
.+++.+++..++.++..++..+.|+++..+++-+...+ .... ++..+++..++..++...+.+...+++.++-..+
T Consensus 57 ~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 132 (1466)
T PTZ00265 57 SHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-NVND---IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTL 132 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777777777777777776442111 1111 1111111122222222222233344555555555
Q ss_pred HHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000671 354 MVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLI 429 (1361)
Q Consensus 354 ~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~gl~v~~l 429 (1361)
...+|+|.++++..-.+..+.|++.|.++.|++.+.+.+. .+..+...++.++.++++++ |.+.+.+++.++ +
T Consensus 133 R~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~p---l 209 (1466)
T PTZ00265 133 KLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFP---L 209 (1466)
T ss_pred HHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---H
Confidence 5666666666665444456789999999999999887543 34444455555555555444 334333333332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000671 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT-VIYW 508 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~-~~~~ 508 (1361)
++.+...+.+.+++..++..+..++..+.+.|.++|||+||.|+-|+.+.++.++..+.-.+...+.....++.. +...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~ 289 (1466)
T PTZ00265 210 IYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMING 289 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233345567777777888888889999999999999999999999998887776544433333223222222211 1111
Q ss_pred HHHHHHHHHHH-HHHHHhCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000671 509 MSPTIISSVIF-LGCALTGS-------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1361)
Q Consensus 509 ~~p~~v~~~~f-~~~~l~~~-------~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 580 (1361)
+......++.+ +++.+..+ +.++++.+++.+........++..+...+..+.++.+|.+||.+.++.++..+
T Consensus 290 ~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~ 369 (1466)
T PTZ00265 290 FILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVE 369 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 11111222223 33333332 35788888776655444445556666678899999999999999997643221
Q ss_pred chhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc-C-
Q 000671 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G- 658 (1361)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~-g- 658 (1361)
...+....+ ....|+++|++|+|+.+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 370 ~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~ 448 (1466)
T PTZ00265 370 NNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSH 448 (1466)
T ss_pred CCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCc
Confidence 111111111 1237999999999986544579999999999999999999999999999999999999999999994 3
Q ss_pred ------------eEEEEecCCcCCCCCHHHHhhcCCC-------------------------------------------
Q 000671 659 ------------SIAYVSQTSWIQSGSIRDNILYGKP------------------------------------------- 683 (1361)
Q Consensus 659 ------------~iayv~Q~~~i~~~ti~eni~~g~~------------------------------------------- 683 (1361)
+||||+|+|.+|++||+|||.+|..
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 3999999999999999999999741
Q ss_pred ---------------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000671 684 ---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1361)
Q Consensus 684 ---------------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1361)
.++++..++++.+++++.+..+|+|.+|.+|++|.+|||||||||+||||++++|+|+|||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS 608 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS 608 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 23456788888899999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCC---------------------------------
Q 000671 749 AVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGG--------------------------------- 794 (1361)
Q Consensus 749 alD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G--------------------------------- 794 (1361)
+||+++++.+.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1466)
T PTZ00265 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNN 688 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccc
Confidence 9999999998766554433 589999999999999899999999986
Q ss_pred --------------eEEEecChHHHHh-cCchHHHHHHHhhhhccCCC-C-CCCCCCCCcccccccc-CCCCCCCC----
Q 000671 795 --------------QITQSGNYQELLL-AGTAFEQLVNAHRDAITGLG-P-LDNAGQGGAEKVEKGR-TARPEEPN---- 852 (1361)
Q Consensus 795 --------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~---- 852 (1361)
+|+|+|+|+||++ .++.|..+++.+........ . .+.............. ....++..
T Consensus 689 ~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1466)
T PTZ00265 689 NNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSK 768 (1466)
T ss_pred cccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 58889988866432211100 0 0000000000000000 00000000
Q ss_pred -CCCCCCCCccccc------cccccCccchHHHH----hhCcccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Q 000671 853 -GIYPRKESSEGEI------SVKGLTQLTEDEEM----EIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATY 921 (1361)
Q Consensus 853 -~~~~~~~~~~~~~------~~~~~~~l~~~e~~----~~g~v~~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 921 (1361)
............. +.....+...-++. ......+..++++++..... +++++++.++..++.++.++
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 846 (1466)
T PTZ00265 769 HENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD--VTIIALSILVAGGLYPVFAL 846 (1466)
T ss_pred ccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 00000000000000 00011223344444333222 23333334444555566666
Q ss_pred HHHHHhcCC----CC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cChhH
Q 000671 922 WLAYAIQIP----KI--TSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGR 993 (1361)
Q Consensus 922 wl~~~~~~~----~~--~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~--tp~Gr 993 (1361)
.++.+++.. .. ....+..++++++++..++.+++.++..+.+.+...++|.++++++++.|++|||+ +++|+
T Consensus 847 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~ 926 (1466)
T PTZ00265 847 LYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGL 926 (1466)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHH
Confidence 666654321 00 12234556667777888888999999999999999999999999999999999996 89999
Q ss_pred HHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH------
Q 000671 994 ILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIA--TARELIRI------ 1065 (1361)
Q Consensus 994 IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~--~sr~l~rl------ 1065 (1361)
+++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|++++.........+ ..++.++.
T Consensus 927 l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1466)
T PTZ00265 927 LSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPG 1006 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999988989999999999999999999999887766554433222111111 11111111
Q ss_pred -------HhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1066 -------NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL 1138 (1361)
Q Consensus 1066 -------~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~ 1138 (1361)
+.+..+...+.++|+++|++|||+|+.|+++.++|.+..+...+..........++....+++..+..+++.+
T Consensus 1007 ~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1466)
T PTZ00265 1007 TVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYW 1086 (1466)
T ss_pred cccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222445678999999999999999999999999999998887776665555555544445444443333332
Q ss_pred H-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCC-CCCCCCcceE
Q 000671 1139 F-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP-PSSWPFKGRI 1216 (1361)
Q Consensus 1139 ~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~-~~~wp~~G~I 1216 (1361)
+ +.++..|.++.|.+..++.+.+....++..+...+.+++++..|.+|+.++++.+++.+...++..+ +...+.+|.|
T Consensus 1087 ~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I 1166 (1466)
T PTZ00265 1087 FGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKI 1166 (1466)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceE
Confidence 2 4556789999998888776655555567778889999999999999999999876643211111111 0112356899
Q ss_pred EEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC--------------------------
Q 000671 1217 ELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-------------------------- 1269 (1361)
Q Consensus 1217 ~f~nVs~~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep-------------------------- 1269 (1361)
+|+||+|+|+.. ..+||+|+||+|+|||+|||||+||||||||+++|.|||+|
T Consensus 1167 ~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 (1466)
T PTZ00265 1167 EIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDE 1246 (1466)
T ss_pred EEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccc
Confidence 999999999632 23599999999999999999999999999999999999999
Q ss_pred ----------------------------CCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCC-CCCCHH
Q 000671 1270 ----------------------------AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDD 1320 (1361)
Q Consensus 1270 ----------------------------~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~-~~~sDe 1320 (1361)
++|+|+|||+||+++++++||++|++|||||+||+|||||||... .+++||
T Consensus 1247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~e 1326 (1466)
T PTZ00265 1247 EQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRE 1326 (1466)
T ss_pred ccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHH
Confidence 699999999999999999999999999999999999999999755 258999
Q ss_pred HHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1321 EIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1321 eI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||++|++.|+-.. .--=|.|+..+++|.++|.|||||+.
T Consensus 1327 eI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIa 1368 (1466)
T PTZ00265 1327 DVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIA 1368 (1466)
T ss_pred HHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHH
Confidence 9999999985211 11226788889999999999999974
No 9
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-69 Score=685.94 Aligned_cols=542 Identities=21% Similarity=0.255 Sum_probs=419.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1361)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1361)
+...+.+++.++...++.++..++..+.|+++..+++....+..+....+.+++++++..++..++.....+...+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (588)
T PRK11174 14 KQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQH 93 (588)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888999999999999999999886431111112222333344445555566555555667788999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 000671 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGL 424 (1361)
Q Consensus 349 iR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~gl 424 (1361)
+...+...+|+|.++++.....+.++|+++|.++.|++++.++.. .+..++...+.+++++++++ +.+++.+++.+
T Consensus 94 ~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~ 173 (588)
T PRK11174 94 IRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTA 173 (588)
T ss_pred HHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998777788999999999999999998653 45555555555555544443 33333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000671 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRK 500 (1361)
Q Consensus 425 ~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i----~~~R~~El~~l~~~~~~~ 500 (1361)
.+...+...+.+..++.+++.++..++..+.+.|.++|+++||.|+||+.+.++. ++.|+.+.+..+......
T Consensus 174 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (588)
T PRK11174 174 ---PLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSS 250 (588)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233456777888888899999999999999999999999999999876655 555666655444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000671 501 AYGTVIYWMSPTIISSVIFLGCALTGS-------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1361)
Q Consensus 501 ~~~~~~~~~~p~~v~~~~f~~~~l~~~-------~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL 573 (1361)
.+..++... +. +.++.++++.+.+. ..+++..+|.++.+...+..|+..++..+..+.++++|.+||.+++
T Consensus 251 ~~~~~~~~~-~~-~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 251 AVLEFFASI-SI-ALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222221 11 11223334333331 1234445566666777888999999999999999999999999999
Q ss_pred cccCCCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcE
Q 000671 574 LDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1361)
Q Consensus 574 ~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~ 653 (1361)
+.++.++.......+....+.|+++|++|.|.++ +++|+|+||++++||+++|+|+||||||||+++|+|++ |++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 329 ETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred cCCCcccCCCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 8765322111100111123469999999877643 47999999999999999999999999999999999999 89999
Q ss_pred EEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 654 v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
|.++| +|+||||+|++|++||+|||.+|++ .+++++.++++.|+++++++.+|+|++|.|||+|.+
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 99998 5999999999999999999999965 889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
||||||||++||||++++|+|+||||||||||++++++|.+. +....+++|+|+|||+++.++.||+|++|++|+|+++
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~-l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA-LNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 999999999999999999999999999999999999999864 4555689999999999999999999999999999999
Q ss_pred cChHHHHhcCchHHHHHHHh
Q 000671 800 GNYQELLLAGTAFEQLVNAH 819 (1361)
Q Consensus 800 g~~~~l~~~~~~~~~~~~~~ 819 (1361)
|+++|++++++.|.++...+
T Consensus 565 G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 565 GDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred CCHHHHHhcchHHHHHHHHh
Confidence 99999999988888887554
No 10
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-69 Score=641.20 Aligned_cols=538 Identities=20% Similarity=0.305 Sum_probs=425.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc---chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE---NLQEG-LSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1361)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~---~~~~g-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1361)
.+.+..|+.+..+.++.++........|.++..+++-+...++ ..... ..+.++.++..+...+-..++.+...|+
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667778888888888888999999999998886654111 12222 2333333344444444456677788889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 000671 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGE-FPFWFHLTWSLALQLFLAIGVLF---GVVGLGAL 421 (1361)
Q Consensus 346 ~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~-~~~~~~~~w~~plqi~va~~~L~---~~lG~~~l 421 (1361)
..|+|..+...+.++.+...+ ++.+||+++.++.|++-+.+ +..++....-..+|.+.++.+++ +.+....+
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD----~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~ 295 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFD----ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTL 295 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhc----cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 999999988888888888876 45699999999999999988 45567777777788888877665 44444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHH
Q 000671 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK----FKSLIESRREKEFKWLSEAQ 497 (1361)
Q Consensus 422 ~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~----f~~~i~~~R~~El~~l~~~~ 497 (1361)
+.+++++ .+...+++++++..++..++..+-.+..+|.|++||+|+.|+-|+. |.+++++.++.- +|-.
T Consensus 296 i~~P~v~---~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~----~k~a 368 (716)
T KOG0058|consen 296 IVVPIVA---LVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLS----KKEA 368 (716)
T ss_pred HHhcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3333322 2345567777888888888888889999999999999999999965 444444443332 2222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000671 498 LRKAYGTVIYW-MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576 (1361)
Q Consensus 498 ~~~~~~~~~~~-~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~ 576 (1361)
+..++....+. +.-..+..+.|.+-.++..+.+|++...+.+..-..+..++..+....+.++++..+.+|+.+|++.+
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 21111111100 11112222333444444458999999998888888899999999999999999999999999999764
Q ss_pred CCCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEE
Q 000671 577 ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL 656 (1361)
Q Consensus 577 e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~ 656 (1361)
..-+.+ ....+....+.|+|+|++|+|+.+++.++|+|+||+|+|||.+|+|||||+||||+.++|+++|+|++|+|.+
T Consensus 449 P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 449 PRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 332222 1111224678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-------------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 657 YG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 657 ~g-------------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
|| +||+|.|+|.+|++||+|||.||.+ .++|++.++.+.+..++.+..+|+|++|.+||+|..|||
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 98 4999999999999999999999987 568889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecCh
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~ 802 (1361)
||||||||||||++||.|+||||.|||||++.+..+ ++.+....+++|||+++|+++.+++||+|+|+++|+++|.|+|
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV-q~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLV-QEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH-HHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccH
Confidence 999999999999999999999999999999997765 6677777889999999999999999999999999999999999
Q ss_pred HHHHhcC-chHHHHHHHhh
Q 000671 803 QELLLAG-TAFEQLVNAHR 820 (1361)
Q Consensus 803 ~~l~~~~-~~~~~~~~~~~ 820 (1361)
+|+++.. +.|.++++.+.
T Consensus 687 ~eLl~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 687 DELLSKPNGLYAKLVQRQL 705 (716)
T ss_pred HHHhhCcccHHHHHHHHhc
Confidence 9999987 68999987654
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.5e-65 Score=636.79 Aligned_cols=545 Identities=23% Similarity=0.330 Sum_probs=437.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1361)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1361)
.++...+-+++.+.-..+..++..+++++.|++.+.+++.+-.. .....-+.++.++.+..+.+.++...-.+...+++
T Consensus 144 ~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~-~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 144 WFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPD-ASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555777777777888888999999999999999865322 22223334445555555666655433344566789
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 000671 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIG---VLFGVVGLGALPG 423 (1361)
Q Consensus 347 ~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~---~L~~~lG~~~l~g 423 (1361)
.|+...+...+|++.++++..-..++++|++++.+ .|.++|.++... ...+.++.+..+++ +++..-++-+++.
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~--~~l~~iiD~~~~~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTG--SILTLIIDLLFALIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888999999998 489999887652 23344444443333 3444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1361)
Q Consensus 424 l~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1361)
++.+.+.+.+..++.+.+++..++.++...++-+...|.++||++||..+-|+.+..+.++.=.+..+.-.+........
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 55555555566677888888889999999999999999999999999999999988888776666555433333322222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch
Q 000671 504 TVIYWMSPTII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1361)
Q Consensus 504 ~~~~~~~p~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 582 (1361)
.......+.+. .++.+++..++.++.+|.+..++..++...+..|+..+......+.+++++.+|+.+.++.|..++.+
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 22211222222 23344555555558999999999999999999999999999999999999999999999876543322
Q ss_pred hhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----
Q 000671 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1361)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---- 658 (1361)
......++.++.|+++|++|+|+.++ +++|+|+|++|++||.++|+|+||||||||+|+|+|+++|++|+|.++|
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 21223445678999999999999764 4799999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEecCCcCCCCCHHHHhhcCCCC-CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 ---------SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 ---------~iayv~Q~~~i~~~ti~eni~~g~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
+|+||+|++.+|++||+|||.++.|. +.++..++++..+.++++..+|.|++|.+||+|.+||||||||+
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 59999999999999999999999985 45888899999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
+||||++++|+|++|||||||||+++++.+.+.+. ...+|+|+|++||+++.+++||+|+||++|+|+++|+++|+++.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~-~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHH-HHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999999999999988754 45678999999999999999999999999999999999999999
Q ss_pred CchHHHHHH
Q 000671 809 GTAFEQLVN 817 (1361)
Q Consensus 809 ~~~~~~~~~ 817 (1361)
++.|.++..
T Consensus 698 ~g~y~~l~~ 706 (709)
T COG2274 698 GGLYARLYQ 706 (709)
T ss_pred cChHHHHHh
Confidence 988888764
No 12
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.8e-65 Score=655.69 Aligned_cols=542 Identities=23% Similarity=0.274 Sum_probs=421.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1361)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1361)
+++..++.+++.++...++.++..++..+.|+++..+++.+-... ....-+.+++++++..++..++.....+...+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777888888888999999999999999988653221 1122223333444444445555444445667889
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGL 424 (1361)
Q Consensus 347 ~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~--~~~~w~~plqi~va~~~L~~~lG~~~l~gl 424 (1361)
.++...+...+|+|.++++.....+.++|+++|.++ |++.+.++... +..+...++ +++++++++..-++-+++.+
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876556788999999997 88888875432 223333333 33444444443334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504 (1361)
Q Consensus 425 ~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~ 504 (1361)
+++.+...+...+.+..++..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++..+...+.........
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556677888888899999999999999999999999999999998877766655444333333222222221
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh
Q 000671 505 VIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1361)
Q Consensus 505 ~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 583 (1361)
.+......+ ..++.+.+..++.++.+|.+.+++...++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 441 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-
Confidence 111111111 222223333344447899999999999999999999999999999999999999999999765422111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000671 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1361)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----- 658 (1361)
...+....+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 442 -~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 442 -KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519 (686)
T ss_pred -cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence 11111234579999999999754 35799999999999999999999999999999999999999999999988
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
+||||||+|++|++||+|||.++++.+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++|
T Consensus 520 ~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRial 599 (686)
T TIGR03797 520 LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLI 599 (686)
T ss_pred CCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 499999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
|||++++|++++||||||+||+++++++.+.+... ++|+|+|||+++.++.||+|++|++|+|++.|+++|++++++
T Consensus 600 ARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~ 676 (686)
T TIGR03797 600 ARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREG 676 (686)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999998876442 589999999999999999999999999999999999999888
Q ss_pred hHHHHHH
Q 000671 811 AFEQLVN 817 (1361)
Q Consensus 811 ~~~~~~~ 817 (1361)
.|.++.+
T Consensus 677 ~y~~l~~ 683 (686)
T TIGR03797 677 LFAQLAR 683 (686)
T ss_pred HHHHHHH
Confidence 8888764
No 13
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.9e-65 Score=659.81 Aligned_cols=541 Identities=19% Similarity=0.232 Sum_probs=424.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1361)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1361)
..++.+++.++...+..++..++..+.|+++..+++..-... .....+.+++++++..++..++.....+...+++.++
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (710)
T TIGR03796 147 RRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG-RQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKL 225 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777778888888999999999999988543221 1112223333444444555555544556677889999
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1361)
Q Consensus 350 R~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~ 428 (1361)
...+...+|+|.++++.....+.++|+++|.++.| +.+.++.. .+..+....+.+++.+++++..-++-+++.++.+.
T Consensus 226 ~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 304 (710)
T TIGR03796 226 AVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAA 304 (710)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987666678899999999988 67776543 33333444444455555555433333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1361)
Q Consensus 429 l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1361)
+.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++.++++.+...+..........+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (710)
T TIGR03796 305 INVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPT 384 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777788888888999999999999999999999999999999999988887776655444333332222111
Q ss_pred HHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh----
Q 000671 509 MSP-TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV---- 583 (1361)
Q Consensus 509 ~~p-~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~---- 583 (1361)
... ....++.+++..++.++.+|.+.+++.+.++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 385 ~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~ 464 (710)
T TIGR03796 385 LLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAP 464 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccc
Confidence 111 111122222333333478999999999999999999999999999999999999999999997654322111
Q ss_pred h-hccc-cCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---
Q 000671 584 R-RISL-QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1361)
Q Consensus 584 ~-~~~~-~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--- 658 (1361)
. .... +...+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 465 ~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i 543 (710)
T TIGR03796 465 AAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPR 543 (710)
T ss_pred ccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeH
Confidence 0 0111 2234679999999999864 35799999999999999999999999999999999999999999999987
Q ss_pred ----------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 ----------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
+|+||||+|+++++||||||.++.+ .+++++.++++.++++++++.+|+|.+|.+||+|.+||||||||
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQR 623 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQR 623 (710)
T ss_pred HHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHH
Confidence 4999999999999999999998864 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++||||++++|+|+||||||||||+++++++++.+.. .++|+|+|||+++.++.||+|++|++|+|++.|+++|+++
T Consensus 624 iaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 624 LEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999987653 5899999999999999999999999999999999999998
Q ss_pred cCchHHHHH
Q 000671 808 AGTAFEQLV 816 (1361)
Q Consensus 808 ~~~~~~~~~ 816 (1361)
+++.|.+++
T Consensus 701 ~~~~y~~l~ 709 (710)
T TIGR03796 701 VGGAYARLI 709 (710)
T ss_pred cCCcHHHHh
Confidence 888887764
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4e-65 Score=655.00 Aligned_cols=535 Identities=21% Similarity=0.263 Sum_probs=400.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--chHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000671 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE--NLQEGLSIVGCLII-TKVVESFTQRHCFFGSRRSGMR 348 (1361)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~--~~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~r 348 (1361)
.+.+++.++...++.++..++..+.|++...+++.+..... .......+.+++.+ ..++..+....+.+...++..+
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888999999999999999987643221 11111111111111 1122222222233334444444
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1361)
Q Consensus 349 iR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~-~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~ 427 (1361)
+| ..+|+|.++.+....++.++|+++|.++.|++.+.+.. ..+..+....+++++++++++..-...+++.++.+
T Consensus 236 lr----~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~ 311 (711)
T TIGR00958 236 IR----EDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL 311 (711)
T ss_pred HH----HHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44 66677777776554456789999999999999998754 34555666666666666655543222223222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507 (1361)
Q Consensus 428 ~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~ 507 (1361)
.+...+...+.+..++..++.++..++..+...|.++|+++||.|++|+.+.++.++..++-.+..++.....+....+.
T Consensus 312 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (711)
T TIGR00958 312 PLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTT 391 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445567777778888888889999999999999999999999998666555444432222222211111111111
Q ss_pred HHHH--HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhh
Q 000671 508 WMSP--TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1361)
Q Consensus 508 ~~~p--~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 585 (1361)
.... ..+..+.++++... .+.++.+.+.+.+.++..+..|+..++..+..+.+++++.+||.+|++.++..++...
T Consensus 392 ~~~~~~~~~~il~~g~~lv~-~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~- 469 (711)
T TIGR00958 392 SVLGMLIQVLVLYYGGQLVL-TGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT- 469 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC-
Confidence 1111 11112223333333 4789999999999999999999999999999999999999999999976543221111
Q ss_pred ccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------
Q 000671 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1361)
Q Consensus 586 ~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------- 658 (1361)
..+.+..+.|+++|++|+|++++++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 470 ~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~ 549 (711)
T TIGR00958 470 LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD 549 (711)
T ss_pred CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC
Confidence 1112234579999999999865556899999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|+||||+|+++++||||||.+|.+ .+++++.++++.++++++++.+|+|.+|.+||+|.+||||||||++||
T Consensus 550 ~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 550 HHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred HHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence 5999999999999999999999965 678899999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCch
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 811 (1361)
||++++|+|+|||||||+||+++++.+.+ ....+++|+|+|||+++.++.+|+|++|++|+|+++|+|+|++++++.
T Consensus 630 RALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~ 706 (711)
T TIGR00958 630 RALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706 (711)
T ss_pred HHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCc
Confidence 99999999999999999999999999877 223478999999999999999999999999999999999999988777
Q ss_pred HHHH
Q 000671 812 FEQL 815 (1361)
Q Consensus 812 ~~~~ 815 (1361)
|.++
T Consensus 707 y~~l 710 (711)
T TIGR00958 707 YKHL 710 (711)
T ss_pred hHhc
Confidence 7654
No 15
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.9e-64 Score=648.43 Aligned_cols=534 Identities=22% Similarity=0.275 Sum_probs=420.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1361)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1361)
++...+.+++.+....++.++..++.++.|++++.+++..-... .....+.+++++++..++..++.....+...+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667888888888888889999999999999998653221 11222233333333444445544444456678889
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1361)
Q Consensus 348 riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~--~~~~w~~plqi~va~~~L~~~lG~~~l~gl~ 425 (1361)
++...+...+|+|.++++... .+.++|++++.+ .|++.+.++... +..+...+. +++.+++++..-++.+++.++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~ 293 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVPLV 293 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999998765 567899999999 799999886442 233333333 333344444443444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV 505 (1361)
Q Consensus 426 v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~ 505 (1361)
++.+.+.+...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+..........
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (694)
T TIGR03375 294 AIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATN 373 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666788888899999999999999999999999999999999999988888777665554444433332222
Q ss_pred HHHHHHHH-HH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh
Q 000671 506 IYWMSPTI-IS-SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1361)
Q Consensus 506 ~~~~~p~~-v~-~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 583 (1361)
+......+ .. ++.++++.+. ++.+|.+.++..+.++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 374 ~~~~~~~~~~~~il~~g~~~v~-~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 452 (694)
T TIGR03375 374 FAQFIQQLVSVAIVVVGVYLIS-DGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT 452 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 21111111 11 2223334334 478999999999999999999999999999999999999999999998764322111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000671 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1361)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----- 658 (1361)
.....+...+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 453 ~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 453 RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 111112234579999999999754 35799999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
+|+||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|.+|.+||+|.+||||||||++
T Consensus 532 ~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRla 611 (694)
T TIGR03375 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA 611 (694)
T ss_pred CCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 5999999999999999999999986 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||||++++|++++||||||+||+++++++.+.+ ....+++|+|+|||+++.++.||+|++|++|++++.|+++|+++.
T Consensus 612 lARall~~p~iliLDE~Ts~LD~~te~~i~~~l-~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRL-KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999998764 445578999999999999999999999999999999999999753
No 16
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.5e-63 Score=629.00 Aligned_cols=542 Identities=17% Similarity=0.212 Sum_probs=412.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1361)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR 350 (1361)
.++.+++.++...+..++..++..+.|+++..+++........ .....++..+++..++..++.....+...+++.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 97 (582)
T PRK11176 19 TIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR-SVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVV 97 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666777777788888888887755432211 111111222222333333433333345567778888
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1361)
Q Consensus 351 ~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~-~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l 429 (1361)
..+...+|+|.++++...-.+.+.|+++|.++.|++++.+.. ..+..++..++.+++++++++..-++.+++.++++.+
T Consensus 98 ~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l 177 (582)
T PRK11176 98 MTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPI 177 (582)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998777677889999999999999998743 3344555556666666666554433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1361)
...+...+.+.+++..++.++..++..+...|.++|+++||.|++|+.+.++.++.-++-.+...+..........+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (582)
T PRK11176 178 VSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQL 257 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556777788888888899999999999999999999999998777666554443222222222211111111111
Q ss_pred -HHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhcc
Q 000671 510 -SPTII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1361)
Q Consensus 510 -~p~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~ 587 (1361)
..+.. ..+.++++.... +.++.+.+...++++..+..|+..+...+..+.+++.+.+|+.++++.++.++.. ...
T Consensus 258 ~~~~~~~~i~~~g~~~~~~-g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~~ 334 (582)
T PRK11176 258 IASLALAFVLYAASFPSVM-DTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--KRV 334 (582)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--CcC
Confidence 11111 222333343444 6899999988888888899999999999999999999999999999765432211 111
Q ss_pred ccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000671 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1361)
Q Consensus 588 ~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------- 658 (1361)
.++..+.|+++|++|+|+++ +.++|+|+|++|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 335 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 335 IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA 413 (582)
T ss_pred CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHH
Confidence 12233469999999999754 35799999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
.|+|+||+|.++++|++|||.+|.+ +++++++++++.+++.++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 414 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 414 SLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 4899999999999999999999853 7889999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchH
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 812 (1361)
|++++|++++|||||||||+++++.+++.+. ...+++|+|+|||+++.++.||+|++|++|++++.|++++++++++.|
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~-~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y 572 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALD-ELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVY 572 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChH
Confidence 9999999999999999999999999887654 445689999999999999999999999999999999999999998889
Q ss_pred HHHHHH
Q 000671 813 EQLVNA 818 (1361)
Q Consensus 813 ~~~~~~ 818 (1361)
+++...
T Consensus 573 ~~l~~~ 578 (582)
T PRK11176 573 AQLHKM 578 (582)
T ss_pred HHHHHH
Confidence 888754
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.6e-63 Score=640.86 Aligned_cols=536 Identities=24% Similarity=0.285 Sum_probs=410.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1361)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR 350 (1361)
.++.+++.++...+..++..++.++.|+++..+++..-... ....-+.+++++++..++..++.....+...+.+.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 150 LITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777888889999999999999887543221 11111222333333344444444333455667888888
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1361)
Q Consensus 351 ~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~--~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~ 428 (1361)
..+...+|+|.++++....++.++|+++|.++ |++++.++... +..+...+. +++.+++++..-++-+++.++++.
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~~~~ 306 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWI-LVIVGLFLVRQNMLLFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999876666788999999998 99998875432 122223333 333333343322222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 000671 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ----LRKAYGT 504 (1361)
Q Consensus 429 l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~----~~~~~~~ 504 (1361)
+...+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+.-.+.. ....+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556788888888999999999999999999999999999999887777665544333222221 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhh
Q 000671 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1361)
Q Consensus 505 ~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~ 584 (1361)
++....+ +.++.++++.+. ++.+|.+.+++...++..+..|+..+...+..+.+++++.+|+.++++.++..+....
T Consensus 387 ~~~~~~~--i~il~~g~~lv~-~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~ 463 (708)
T TIGR01193 387 VTKLILN--VVILWTGAYLVM-RGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK 463 (708)
T ss_pred HHHHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 2222222 112223334334 4789999999999999999999999999999999999999999999976543221111
Q ss_pred hccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000671 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1361)
Q Consensus 585 ~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------ 658 (1361)
....++..+.|+++|++|+|+++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 464 ~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 541 (708)
T TIGR01193 464 RTELNNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541 (708)
T ss_pred ccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc
Confidence 11112234679999999999743 4799999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEecCCcCCCCCHHHHhhcCC--CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 -------SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 -------~iayv~Q~~~i~~~ti~eni~~g~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
+||||||+|++|++||+|||.++. ..+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++
T Consensus 542 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRia 621 (708)
T TIGR01193 542 DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621 (708)
T ss_pred CHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHH
Confidence 499999999999999999999983 46788999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcC
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||||++++|++++||||||+||+++++++.+.+.. .+++|+|+|||+++.+..||+|++|++|++++.|+++++++++
T Consensus 622 lARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~ 699 (708)
T TIGR01193 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699 (708)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcC
Confidence 99999999999999999999999999999887654 3689999999999999999999999999999999999999888
Q ss_pred chHHHHH
Q 000671 810 TAFEQLV 816 (1361)
Q Consensus 810 ~~~~~~~ 816 (1361)
+.|.+++
T Consensus 700 ~~y~~l~ 706 (708)
T TIGR01193 700 GFYASLI 706 (708)
T ss_pred CcHHHHh
Confidence 8887765
No 18
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=7.9e-63 Score=623.61 Aligned_cols=542 Identities=19% Similarity=0.260 Sum_probs=420.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1361)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR 350 (1361)
+.+.+++.+++..++.++..++....|+++..+++..-... ....-+.+++.+++..++..++.....+...+.+.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 86 (571)
T TIGR02203 8 YVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVV 86 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888899999999999888776432211 11111112222333333344443333345667888888
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1361)
Q Consensus 351 ~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l 429 (1361)
..+...+|+|.++.+....++.+.|++.|.++.|++++.++.. .+..++...+.+++++++++..-++-+++.++++++
T Consensus 87 ~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l 166 (571)
T TIGR02203 87 RDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPV 166 (571)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8888899999999887766778899999999999999987543 344555555556666555554333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1361)
.+.+...+.+..++..++..+..+++.+.++|.++|+++||.++.|+.+.++.++..++..+...+.....+....+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (571)
T TIGR02203 167 LSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQL 246 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445567777888888999999999999999999999999999999887777766665544333332222222221111
Q ss_pred HH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccc
Q 000671 510 SP-TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1361)
Q Consensus 510 ~p-~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~ 588 (1361)
.. +...++.+.+..+..++.+|++.+++.+.++..+..|+..+......+.+++++.+|+.++++.++..+... .+.
T Consensus 247 ~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~ 324 (571)
T TIGR02203 247 IASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RAI 324 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CCC
Confidence 11 112222223333333478999999999999999999999999999999999999999999997654322111 111
Q ss_pred cCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000671 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1361)
Q Consensus 589 ~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------- 658 (1361)
....+.|+++|++|+|++. +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 325 ~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~ 403 (571)
T TIGR02203 325 ERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAS 403 (571)
T ss_pred CCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHH
Confidence 1234579999999999764 35799999999999999999999999999999999999999999999988
Q ss_pred ---eEEEEecCCcCCCCCHHHHhhcCC--CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 659 ---SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 659 ---~iayv~Q~~~i~~~ti~eni~~g~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
.++|+||+|++|++|+||||.++. +.+++++.++++.|+++++++.+|+|.+|.+|++|.+||||||||++||||
T Consensus 404 ~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 404 LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483 (571)
T ss_pred HHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 499999999999999999999986 488999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHH
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 813 (1361)
++++|+|++||||||+||+++++++.+.+. ...+++|+|+|||+.+.++.||+|++|++|++++.|++++++++++.|.
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~-~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~ 562 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALE-RLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYA 562 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHH-HHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHH
Confidence 999999999999999999999999987664 4457899999999999999999999999999999999999998877777
Q ss_pred HHHH
Q 000671 814 QLVN 817 (1361)
Q Consensus 814 ~~~~ 817 (1361)
++.+
T Consensus 563 ~~~~ 566 (571)
T TIGR02203 563 QLHN 566 (571)
T ss_pred HHHH
Confidence 7654
No 19
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-63 Score=625.69 Aligned_cols=539 Identities=23% Similarity=0.317 Sum_probs=407.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCcchH-HHHHHHHH---HHHHHHHHHHHHHHHH-
Q 000671 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNY----SNRGEENLQ-EGLSIVGC---LIITKVVESFTQRHCF- 339 (1361)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~----~~~~~~~~~-~g~~~~~~---l~~~~~~~~~~~~~~~- 339 (1361)
+-+++..++++....+..+...+.+...|.+-..+... ...+++... ....|+.. +.+...+..+ .++|+
T Consensus 653 ~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~-~q~~~f 731 (1228)
T KOG0055|consen 653 WRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNF-LQHYFF 731 (1228)
T ss_pred HHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34555556666666666677777788888765544332 222222111 11112222 2222222222 24444
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-----HHHHHHHHHHHHHHHHHHHH
Q 000671 340 -FGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-----WFHLTWSLALQLFLAIGVLF 413 (1361)
Q Consensus 340 -~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-----~~~~~w~~plqi~va~~~L~ 413 (1361)
..+.++..|+|......+.++...+.+.. +++ |.+.+.+++|+..+...+. .+..+-+...-+++++++-
T Consensus 732 ~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~--~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~- 807 (1228)
T KOG0055|consen 732 GIAGEKLTKRLRSMMFRALLRQEVGWFDDP--ENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYG- 807 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCC--ccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45778899999888777777777777653 456 9999999999987664332 1222222233334444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHH----HHHHHH
Q 000671 414 GVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIE----SRREKE 489 (1361)
Q Consensus 414 ~~lG~~~l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~----~~R~~E 489 (1361)
|.+++.+++-.+++++ ..+...+.+.+..++.++..++-.++++|++.|||+||.|+-|+.|.+... ..++.+
T Consensus 808 W~lalv~la~~Pll~~---~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 808 WRLALVVLATFPLLIL---SGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333 344457788888999999999999999999999999999999988755443 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1361)
Q Consensus 490 l~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI 569 (1361)
.+.-.......++...+ .-...++..+.+..++.++..++..+|.++.++..-...+.+.....+.+..|+.|..+|
T Consensus 885 ~~~~~i~gl~f~~sqs~---~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~i 961 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSL---LFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSI 961 (1228)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 33222222222222111 111223334455566777889999999999888877777777777788899999999999
Q ss_pred HHHhcccC-CCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc
Q 000671 570 NAFLLDHE-LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 570 ~~fL~~~e-~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~ 648 (1361)
.+.++.+. +++++......++-.+.|+++|++|+||.+++.++|+|+||++++|+.+|+|||+||||||.+.+|.++|+
T Consensus 962 F~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd 1041 (1228)
T KOG0055|consen 962 FEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD 1041 (1228)
T ss_pred HHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99998764 54433122223345678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCC-CCCHHHHHHHHHHhcchHHHhcCCCCCCcccc
Q 000671 649 KISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGK-PMDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1361)
Q Consensus 649 ~~~G~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~-~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig 714 (1361)
|++|.|.++| +||.|+|+|.+|+.||||||++|. ..+++++.++++....++.+..||+|++|.+|
T Consensus 1042 p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccC
Confidence 9999999998 599999999999999999999993 46889999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCC
Q 000671 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1361)
Q Consensus 715 ~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1361)
|+|.+||||||||||||||+.+||+||||||.|||||.++++.+ ++.++....|+|.|+|+|+++.+++||.|+|++||
T Consensus 1122 erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvV-QeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G 1200 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVV-QEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNG 1200 (1228)
T ss_pred cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHH-HHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECC
Confidence 99999999999999999999999999999999999999998864 77788888999999999999999999999999999
Q ss_pred eEEEecChHHHHhcCchHHHHHHHh
Q 000671 795 QITQSGNYQELLLAGTAFEQLVNAH 819 (1361)
Q Consensus 795 ~i~~~g~~~~l~~~~~~~~~~~~~~ 819 (1361)
+|+|+|+|++|++.++.|.+++..+
T Consensus 1201 ~VvE~GtH~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1201 KVVEQGTHDELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred EEEecccHHHHHhCCCchHHHhhhc
Confidence 9999999999999999999987644
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.8e-62 Score=618.68 Aligned_cols=538 Identities=18% Similarity=0.251 Sum_probs=407.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG-EENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1361)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~-~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1361)
..+.+++.++...++.++..++..+.|+++..+++..... ..+......++.++++..++..++.....+...+.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (592)
T PRK10790 17 YGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777788888889999999999888854322 111111111222233333444444444445567788888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 000671 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLF---GVVGLGALPGLV 425 (1361)
Q Consensus 350 R~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~-~~~~w~~plqi~va~~~L~---~~lG~~~l~gl~ 425 (1361)
...+...+|+|.++.+.....+.++|+++|.++.|++++.+.... +..+....+.+++++.+++ +.+++..+++++
T Consensus 97 ~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~ 176 (592)
T PRK10790 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFP 176 (592)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998776666778999999999999999875443 2233333333333333332 223333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 000671 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY--G 503 (1361)
Q Consensus 426 v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~--~ 503 (1361)
++ +.+.....+..++..++..+..++-.+..+|.++|+++||.|+.|+.+.++..+..++..+...+.....+. .
T Consensus 177 i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 177 AV---LVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222334456666677777778888888999999999999999999999888877655433321111111111 1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch
Q 000671 504 TVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1361)
Q Consensus 504 ~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 582 (1361)
.......-++ +.++.++++ .. .+.++.+.++..+.++..+..|+..++.....+.++++|.+||.++++.++.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~-~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCGLLMLFGF-SA-SGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 1111111111 111122233 22 36799999999999999999999999999999999999999999999765432211
Q ss_pred hhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----
Q 000671 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1361)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---- 658 (1361)
.. .....+.|+++|++|+|+++ .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 332 -~~--~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 332 -DD--RPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred -Cc--cCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 11 11234579999999999753 4699999999999999999999999999999999999999999999987
Q ss_pred ---------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 ---------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 ---------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
+|+||||+|.+|++|++|||.++.+.++++..+++++++++++++.+|+|.+|.+|++|.+||||||||++
T Consensus 407 ~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 407 SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred hCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 39999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcC
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||||++++|+|++||||||+||+++++++.+.+. ...+++|+|+|||+++.++.+|+|++|++|++++.|+++|+++++
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~l~-~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999999977654 445679999999999999999999999999999999999999999
Q ss_pred chHHHHHHHh
Q 000671 810 TAFEQLVNAH 819 (1361)
Q Consensus 810 ~~~~~~~~~~ 819 (1361)
+.|.++.+.+
T Consensus 566 ~~y~~l~~~~ 575 (592)
T PRK10790 566 GRYWQMYQLQ 575 (592)
T ss_pred CHHHHHHHHH
Confidence 9999887654
No 21
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=5.7e-62 Score=616.11 Aligned_cols=541 Identities=21% Similarity=0.268 Sum_probs=411.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNY-SNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1361)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~-~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1361)
.+.+.+++.+....++.++..++.++.|+++..+++. +.+.+. ..-..+++.+++..++..+......+...+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (576)
T TIGR02204 11 PFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS--GLLNRYFAFLLVVALVLALGTAARFYLVTWLGER 88 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777778888889999999999998886 322211 1111122222222233333333444566788889
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 000671 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGL 424 (1361)
Q Consensus 349 iR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~gl 424 (1361)
+...+...+|+|.++.+.....+.+.|+++|.++.|++.+.++.. .+..++...+.+++++++++ +.+++.+++++
T Consensus 89 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 168 (576)
T TIGR02204 89 VVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAV 168 (576)
T ss_pred HHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999877655667889999999999999987643 33343444444444444333 33333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504 (1361)
Q Consensus 425 ~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~ 504 (1361)
++ ...+...+.+.+++..++.++..++..+...|.++|+++||.+++|+.+.++.++..++..+..++.........
T Consensus 169 ~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (576)
T TIGR02204 169 PL---VLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLT 245 (576)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222233467778888888899999999999999999999999999999877776655544433332222211111
Q ss_pred HHH-HHHHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch
Q 000671 505 VIY-WMSPTII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1361)
Q Consensus 505 ~~~-~~~p~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 582 (1361)
.+. .+..... ....++++.... +.++.+.+++...++..+..|+..++..+..+.+++++++||.++++.++..+..
T Consensus 246 ~~~~~~~~~~~~~~~~~g~~~v~~-g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 246 AIVIVLVFGAIVGVLWVGAHDVIA-GKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 111 1111111 222233333343 7899999999999999999999999999999999999999999999765421111
Q ss_pred hhhc-cccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---
Q 000671 583 VRRI-SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1361)
Q Consensus 583 ~~~~-~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--- 658 (1361)
.... ...+..+.|+++|++|+|++++++++|+|+||+++|||.++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i 404 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH
Confidence 1111 111123569999999999864446799999999999999999999999999999999999999999999987
Q ss_pred ----------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 ----------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.++++.+|+|.+|.+|++|.+||||||||
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qr 484 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR 484 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHH
Confidence 4999999999999999999999875 57788999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++||||++++|++++||||||+||+++++.+++.+. ...+++|+|++||+++.++.+|+|++|++|++++.|+++++.+
T Consensus 485 l~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~-~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 485 IAIARAILKDAPILLLDEATSALDAESEQLVQQALE-TLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 999999999999999999999999999998877654 4457899999999999999999999999999999999999998
Q ss_pred cCchHHHHHH
Q 000671 808 AGTAFEQLVN 817 (1361)
Q Consensus 808 ~~~~~~~~~~ 817 (1361)
+++.|.++..
T Consensus 564 ~~~~~~~l~~ 573 (576)
T TIGR02204 564 KGGLYARLAR 573 (576)
T ss_pred cCChHHHHHh
Confidence 8888887654
No 22
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.5e-61 Score=608.84 Aligned_cols=540 Identities=21% Similarity=0.255 Sum_probs=403.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEE--NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1361)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~-~~~~--~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1361)
+.+.+++.+++..++.++..++..+.|.++..+++-.. .+.. .....+..++++++..++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777788888888999999999999887431 2110 00111111222323333444444334456678888
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 000671 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPG 423 (1361)
Q Consensus 348 riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~g 423 (1361)
++...+...+|+|.++++....++.++|++++.++.|++++.++.. .+..+....+.+++++++++ +.+++.++++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988776778899999999999999998654 33444444455544444443 3344433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1361)
Q Consensus 424 l~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1361)
++++.+.+ ...+.+..++..++..+..++..+.+.|.++|+++||.|+.|+.+.++.++..++-.+.-.+.....+..
T Consensus 170 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LLLLLLLL--PLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222 2345666777788888888999999999999999999999999887777665544333222222222211
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Q 000671 504 TV-IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS-MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1361)
Q Consensus 504 ~~-~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~-l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 581 (1361)
.. ...+....+.++.+.+..+.. +.++.+..++.+.+... ...|+..++..+..+.++++|.+||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~~~-g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGGVG-GNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 11 111112222222333333343 67788876665555433 3468888899999999999999999999976532111
Q ss_pred hhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---
Q 000671 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1361)
Q Consensus 582 ~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--- 658 (1361)
.. ........+.|+++|++|+|+++ ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 327 ~~-~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i 404 (574)
T PRK11160 327 PT-TSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPI 404 (574)
T ss_pred Cc-ccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 10 11111234579999999999754 24799999999999999999999999999999999999999999999987
Q ss_pred ----------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 ----------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.|+||||+|+++++|++|||.++.+ .++++..++++.++++++++. |+|.+|.+||+|.+||||||||
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHH
Confidence 3999999999999999999999875 678899999999999999999 9999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++||||++++|++++||||||+||+++++.+.+.+. ...+++|+|++||+++.++.||+|++|++|++++.|+++|+++
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~-~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLA-EHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999887654 4457899999999999999999999999999999999999999
Q ss_pred cCchHHHHHH
Q 000671 808 AGTAFEQLVN 817 (1361)
Q Consensus 808 ~~~~~~~~~~ 817 (1361)
+++.|.++.+
T Consensus 563 ~~g~y~~l~~ 572 (574)
T PRK11160 563 QQGRYYQLKQ 572 (574)
T ss_pred cCcHHHHHHh
Confidence 9998888754
No 23
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.2e-61 Score=608.25 Aligned_cols=535 Identities=18% Similarity=0.254 Sum_probs=403.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1361)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~ 351 (1361)
.+.+++.+....+..++..++..+.|+++..+++.+.... .... ++..+++..++..+......+...++..++|.
T Consensus 14 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 14 LGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DIFP---LLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777888888899999999998888654321 1111 11111111122222222223445677788888
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 000671 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1361)
Q Consensus 352 ~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~gl~v~ 427 (1361)
.+...+|+|.++++.....+.+.|++++.++.|++.+.+... .+.......+..++.+++++ +.+++..++ ++
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~---~~ 166 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVV---LG 166 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 899999999999987766778899999999999998865422 22222222222222222222 223333332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000671 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR----REKEFKWLSEAQLRKAYG 503 (1361)
Q Consensus 428 ~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~----R~~El~~l~~~~~~~~~~ 503 (1361)
++...+...+.+..++.+++.++..++..+...|.++|+++||.|+.|+.+.++..+. ++.+.+..+.........
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345566777888888888999999999999999999999999998766555443 333333222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh
Q 000671 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1361)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 583 (1361)
.+.... ..+.+..++++.+. ++.+|.+.+++++.++..+..|+..+...+..+.+++.+++|+.+++..++..++..
T Consensus 247 ~~~~~~--~~~~~~~~g~~~v~-~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 323 (588)
T PRK13657 247 RAASTI--TMLAILVLGAALVQ-KGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP 323 (588)
T ss_pred HHHHHH--HHHHHHHHHHHHHH-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 111111 11222233444444 478999999999999999999999999999999999999999999987643221111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000671 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1361)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----- 658 (1361)
...+.+..++.|+++|++|+|+++ +++|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~ 401 (588)
T PRK13657 324 GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT 401 (588)
T ss_pred CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhh
Confidence 111111223479999999999743 4699999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
.|+|+||+|+++++|+||||.++++ .++++..++++.+++.+.++.+|+|.+|.+|++|.+||||||||++
T Consensus 402 ~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia 481 (588)
T PRK13657 402 VTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA 481 (588)
T ss_pred CCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH
Confidence 5999999999999999999999965 6788899999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcC
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||||++++|++++||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++++.+
T Consensus 482 lARall~~~~iliLDEpts~LD~~t~~~i~~~l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~ 560 (588)
T PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARG 560 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCC
Confidence 99999999999999999999999999999876643 45689999999999999999999999999999999999999888
Q ss_pred chHHHHHHHh
Q 000671 810 TAFEQLVNAH 819 (1361)
Q Consensus 810 ~~~~~~~~~~ 819 (1361)
+.|.++....
T Consensus 561 ~~y~~l~~~~ 570 (588)
T PRK13657 561 GRFAALLRAQ 570 (588)
T ss_pred ChHHHHHHHh
Confidence 8888887643
No 24
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.9e-61 Score=606.14 Aligned_cols=526 Identities=21% Similarity=0.268 Sum_probs=399.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000671 287 LLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSS 366 (1361)
Q Consensus 287 ~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~ 366 (1361)
++..++..+.|+++..+++............+.+++.+++..++..++.....+...+.+.++...+...+|+|.++++.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 45556677889999998886543211112222333344444444444443333455667888888888999999999887
Q ss_pred ccCCCCCHHHHHHHHHhHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 367 LGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLG-ALPGLVLFLICGLLNVPFAKILQKC 444 (1361)
Q Consensus 367 ~~~~~~~~G~ivNlms~D~~ri~~~~-~~~~~~w~~plqi~va~~~L~~~lG~~-~l~gl~v~~l~~~l~~~~~~~~~~~ 444 (1361)
....+.++|+++|.++.|++.+.... ..+..++..++.+++++++++..++|. +++.++++.+...+...+.+.+.+.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667789999999999999997643 334555555555555544443334442 2333333333333344456666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 445 QSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRRE----KEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFL 520 (1361)
Q Consensus 445 q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~----~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~ 520 (1361)
.++.++..++..+.+.|.++|+++||.|++|+.+.++..+..+ .+.+..+.............. ....++.++
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ 241 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIG---MANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 7777777788889999999999999999999987666655333 333322222111111111111 111112222
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEee
Q 000671 521 GCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEG 600 (1361)
Q Consensus 521 ~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~ 600 (1361)
+..++.++.+|.+.+++.+.++..+..|+..++..+..+.+++++.+||.++++.++..+... .+.+..++.|+++|+
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~--~~~~~~~~~I~~~~v 319 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS--EPVPEGRGELDVNIR 319 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC--CCCCCCCCcEEEEEE
Confidence 333333478999999999999999999999999999999999999999999997653221111 111123457999999
Q ss_pred EEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEecCC
Q 000671 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667 (1361)
Q Consensus 601 ~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~~ 667 (1361)
+|+|+.+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+|
T Consensus 320 ~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 398 (569)
T PRK10789 320 QFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP 398 (569)
T ss_pred EEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC
Confidence 9999854 35799999999999999999999999999999999999999999999987 389999999
Q ss_pred cCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000671 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1361)
Q Consensus 668 ~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1361)
+++++|++|||.++.+ .++++++++++.+++.+++..+|+|.+|.+|++|.+||||||||++||||++++|+++|||||
T Consensus 399 ~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEp 478 (569)
T PRK10789 399 FLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA 478 (569)
T ss_pred eeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 9999999999999864 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHHHh
Q 000671 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1361)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 819 (1361)
||+||+++++++.+.+.. ..+++|+|++||+++.++.+|+|++|++|++++.|++++++++++.|.++.+.+
T Consensus 479 ts~LD~~~~~~i~~~l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 479 LSAVDGRTEHQILHNLRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cccCCHHHHHHHHHHHHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 999999999999876543 457899999999999999999999999999999999999999888888877543
No 25
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-63 Score=593.96 Aligned_cols=467 Identities=23% Similarity=0.295 Sum_probs=390.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CC--chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP----KI--TSGILIGVYAGVSTASAVFVYFRSFFA 959 (1361)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~----~~--~~~~~l~iy~~l~~~~~i~~~~~~~~~ 959 (1361)
++..+.|.+.... .+..+.++.++.....+..|++++..++.- .. .......+..++.++++++.+++.+++
T Consensus 135 ~~rl~~l~~~~~~--~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 135 LKRLLGLLKPEWK--WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHhchhHH--HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666654333 333333333444445666677666544321 10 111234556677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000671 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1361)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1361)
.+.+.+...++|..+|++++|+.++|||.+.+|+|+||+++|...+...++..+...+.+.++.++.++.|++.+|.+.+
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000671 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1361)
Q Consensus 1040 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1361)
+.+..+++...+.++|.+..|++.+..+++-+.......|.+++++|||+|+.|++..++|.+.+++..+...+......
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98888888888899999999999999999999999999999999999999999999999999999887766654444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000671 1120 WLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1361)
Q Consensus 1120 wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~ 1198 (1361)
.+.-..++.+++..+.+... +.++..|.+++|.+..++.|...+...+.++...++++-+++.|.+|++||+|.+|.-+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 44444455555555444444 46677899999999999999999999999999999999999999999999999877654
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEe--CCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 000671 1199 AIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276 (1361)
Q Consensus 1199 ~~~~~~~~~~~wp~~G~I~f~nVs~~Y--~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~I 1276 (1361)
.. +...|. ..+|.|+|+||+|+| ||+. +||||+||+|+|||+||+||||||||||++++|.|||||++|+|++
T Consensus 453 ~~--G~~~p~--~~~G~IeF~~VsFaYP~Rp~~-~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 453 LT--GTLAPD--HLQGVIEFEDVSFAYPTRPDV-PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CC--Cccccc--cccceEEEEEeeeecCCCCCc-hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 32 222222 578999999999999 4444 4999999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhhcCceecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCc---CCCCCCcccccCCchhhhhhcc
Q 000671 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTP---NSRNSRIDIDFPTFNKFCCRII 1352 (1361)
Q Consensus 1277 DGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~---~~~~~~~~~~~~~~~~~~~~~~ 1352 (1361)
||+||++++.+.||++|++|.|||+||+|||||||... ...+||||.+|.++|+ .-.+---|-|+.++|+|+-+|.
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 99999999999999999999999999999999999632 2689999999999984 2234444677888999999999
Q ss_pred cccccee
Q 000671 1353 KTKQLVT 1359 (1361)
Q Consensus 1353 ~~~~~~~ 1359 (1361)
||||++.
T Consensus 608 GQKQRIA 614 (716)
T KOG0058|consen 608 GQKQRIA 614 (716)
T ss_pred hHHHHHH
Confidence 9999974
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-60 Score=614.27 Aligned_cols=543 Identities=21% Similarity=0.232 Sum_probs=414.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1361)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1361)
..++.+++.+....+..++..++.++.|+++..+++.+-... +....+.+++++++..++..++.....+...+++.++
T Consensus 132 ~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (694)
T TIGR01846 132 PAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRI 210 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777778888888899999999999888553211 1122223333334444444554444445666788899
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1361)
Q Consensus 350 R~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~ 428 (1361)
...+...+|+|.++++...-.+.++|+++|.+ .|++.+.++.. .+.......+.+++.+++++..-++-+++.+++++
T Consensus 211 ~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 289 (694)
T TIGR01846 211 DVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLV 289 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987766778999999999 69999987643 22222222222333333333332222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1361)
Q Consensus 429 l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1361)
+...+...+.+.+++..++.++..+++.+.+.|.++|+++||.++.|+.+.++.++.-++..+...+.............
T Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR01846 290 CYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIE 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445667777888888888999999999999999999999999988777766554443333332222222211111
Q ss_pred HHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhcc
Q 000671 509 MSP-TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1361)
Q Consensus 509 ~~p-~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~ 587 (1361)
... ....++.+.+..++..+.+|.+.+.+...+...+..|+..+...+..+.+++++++|+.++++.++..+.. ....
T Consensus 370 ~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~ 448 (694)
T TIGR01846 370 LIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAA 448 (694)
T ss_pred HHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCC
Confidence 111 11122223333333347899999999999999999999999999999999999999999999765432211 1111
Q ss_pred ccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000671 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1361)
Q Consensus 588 ~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------- 658 (1361)
.+..++.|+++|++|+|+++ ++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 449 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 449 LPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA 527 (694)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHH
Confidence 12234679999999999754 34699999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
.|+||||+|.++++|++|||.++.+ .++++..++++.+++.++++.+|+|.+|.+|++|.+||||||||++||||
T Consensus 528 ~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 528 WLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 3899999999999999999999865 67889999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHH
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 813 (1361)
++++|+++|||||||+||+++++.+.+.+.. ..+++|+|++||+++.++.||+|++|++|++++.|++++++++++.|.
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~ 686 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYA 686 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHH
Confidence 9999999999999999999999999876644 457899999999999999999999999999999999999999988898
Q ss_pred HHHH
Q 000671 814 QLVN 817 (1361)
Q Consensus 814 ~~~~ 817 (1361)
++.+
T Consensus 687 ~l~~ 690 (694)
T TIGR01846 687 RLWQ 690 (694)
T ss_pred HHHH
Confidence 8865
No 27
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.1e-61 Score=601.64 Aligned_cols=502 Identities=19% Similarity=0.248 Sum_probs=372.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1361)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~ 351 (1361)
.+.+++.++...++.++..++..+.|+++..+++........... +.++.++++..++..+......+...+.+.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (529)
T TIGR02868 8 LQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYL-SVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLG 86 (529)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777788888889999999999988754322111111 1111111122233333333333455677888888
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 000671 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1361)
Q Consensus 352 ~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~-~~~~w~~plqi~va~~~L~---~~lG~~~l~gl~v~ 427 (1361)
.+...+|+|.++++.....+.++|+++|.++.|++++.+.... +..+....+.+++++++++ +.+++.++++++++
T Consensus 87 ~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~ 166 (529)
T TIGR02868 87 RLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLA 166 (529)
T ss_pred HHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8899999999999887777889999999999999999886543 3333344444444444433 33444433333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507 (1361)
Q Consensus 428 ~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~ 507 (1361)
.++.+ ....+..++..++..+..++..+..+|.++|+++||.|++|+.+.++.++..++..+...+.....+....+.
T Consensus 167 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (529)
T TIGR02868 167 GFVAP--LVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQ 244 (529)
T ss_pred HHHHH--HHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 1223334555666778889999999999999999999999999988887766654444333332222222222
Q ss_pred HHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhh-
Q 000671 508 WMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR- 585 (1361)
Q Consensus 508 ~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~- 585 (1361)
.....+ ...+.+.+..++.++.++.+.+.+.+.+...+..|+..++..+..+.++++|.+|+.++++.++..++....
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 324 (529)
T TIGR02868 245 LLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA 324 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence 111111 112222232333347899999998888889999999999999999999999999999999765432111000
Q ss_pred -ccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000671 586 -ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1361)
Q Consensus 586 -~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------ 658 (1361)
.......+.|+++|++|+|+++ +++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 325 ~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~ 402 (529)
T TIGR02868 325 AGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL 402 (529)
T ss_pred CcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH
Confidence 0011123569999999999754 3699999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+||||||+|++|++||||||.+|.+ .+++++.++++.++++++++.+|+|.+|.|||+|.+||||||||++||
T Consensus 403 ~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 403 QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 7999999999999999999999875 688999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 779 (1361)
||++++|+|++|||||||||+++++.|.+.+. ...+++|+|+|||++
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l~-~~~~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDLL-AALSGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEecCC
Confidence 99999999999999999999999999987664 456789999999985
No 28
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.2e-60 Score=601.77 Aligned_cols=533 Identities=24% Similarity=0.331 Sum_probs=404.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1361)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~ 354 (1361)
++ .+....++.++..++....|.++..+++.......... .+...+++..++..++.....+...+.+.++...+.
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELL---ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 77777788888889999999999988876541111111 111122222222333333334445556678888888
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 000671 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWF-HLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLIC 430 (1361)
Q Consensus 355 ~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~-~~~w~~plqi~va~~~L~---~~lG~~~l~gl~v~~l~ 430 (1361)
..+|+|.++++....+++..|++++.++.|++.+....... ..+-..++.++..+++++ +.+++..+.+++++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~-- 166 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLA-- 166 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--
Confidence 99999999998766677789999999999999998866543 222223333333333333 223333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000671 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG-TVIYWM 509 (1361)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~-~~~~~~ 509 (1361)
.....+.++.++..++..+..++..+.+.|.++|+++||.|+.|+...++.++..++..+.-.+.....+.. ......
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 167 -LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334555677888888888999999999999999999999998765555444333322211111111111 111222
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhcccc
Q 000671 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ 589 (1361)
Q Consensus 510 ~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~ 589 (1361)
..+....+.+.+......+.++.+.+.+.+.++..+..|+..+...+..+.++..|.+|+.++++.++.-.+.... ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~ 323 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CC
Confidence 2222222333333333346799999999999999999999999999999999999999999999875432111110 12
Q ss_pred CCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------
Q 000671 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1361)
Q Consensus 590 ~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------- 658 (1361)
...+.|+++|++|+|++ ++++|+|+||++++||.+|||||+|||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 324 DTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 34467999999999985 34799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 659 --~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+||||||+|++|++||+|||.+|++ .++++..++++.++++++++.+|+|.+|.+||+|.+||||||||++||||++
T Consensus 402 r~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 402 RKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 4999999999999999999999988 6888999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHH
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 815 (1361)
++|+|++||||||+||+++++.|.+.+. ...++||+|+|+|+++.+.+||+|+||++|+|++.|+|+||+++++.|.++
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~-~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l 560 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARL 560 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHH-HHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHH
Confidence 9999999999999999999999987665 344789999999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 000671 816 VNAH 819 (1361)
Q Consensus 816 ~~~~ 819 (1361)
.+.+
T Consensus 561 ~~~~ 564 (567)
T COG1132 561 YQAQ 564 (567)
T ss_pred HHHh
Confidence 8654
No 29
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1e-60 Score=598.99 Aligned_cols=519 Identities=20% Similarity=0.225 Sum_probs=398.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1361)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~ 354 (1361)
+++.++...++.++..++..+.|+++..+++..-... +...-+.+++.+++..++..++.....+...+.+.++...+.
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888999999999999988543211 111222333344444555555555555667788999999999
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 000671 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLA--IGVLFGVVGLGALPGLVLFLIC 430 (1361)
Q Consensus 355 ~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~--~~~~w~~plqi~va--~~~L~~~lG~~~l~gl~v~~l~ 430 (1361)
..+|+|.++++.. ..+...+.+..|++++.+.... +..+...++.++.+ ++.+.+.+++.+++++++++
T Consensus 83 ~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~-- 155 (544)
T TIGR01842 83 QPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVVLV-- 155 (544)
T ss_pred HHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--
Confidence 9999999998752 2345677788999999875432 33334444433322 22223444544444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMS 510 (1361)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~ 510 (1361)
.+.....+..++..++.++..+++.+.++|.++|+++||.|++|+.+.++.++..++..+...+.....+....+....
T Consensus 156 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 156 -GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333456677777888899999999999999999999999999999988887766655444433333222222211111
Q ss_pred HHH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccc
Q 000671 511 PTI--ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1361)
Q Consensus 511 p~~--v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~ 588 (1361)
..+ +..+.++++. ..++.+|++.+++.+.++..+..|+..++..+..+.+++++.+|+.++++.++..++. .+.
T Consensus 235 ~~~~~~~~~~~g~~l-~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~ 310 (544)
T TIGR01842 235 RIVLQSLVLGLGAYL-AIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPL 310 (544)
T ss_pred HHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCC
Confidence 111 1222333333 3347899999999999999999999999999999999999999999999765432211 111
Q ss_pred cCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000671 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1361)
Q Consensus 589 ~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------- 658 (1361)
+..++.++++|++|+|+++ ++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 2233579999999999753 34799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 659 ---~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
.++|+||+|+++++|++|||.++.+ .+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++||||+
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 4999999999999999999986654 788899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+++|+++|||||||+||+++++.+.+.+.....+++|+|++||+++.+..||+|++|++|++++.|+++++++
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999988765444346899999999999988899999999999999999999864
No 30
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.9e-59 Score=590.52 Aligned_cols=535 Identities=18% Similarity=0.240 Sum_probs=403.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1361)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~ 351 (1361)
++.+++.++...++.++..++..+.|+++..+++.....+. . ..++...++..++..+......+...++..++|.
T Consensus 14 l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (585)
T TIGR01192 14 LNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-V---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788888888999999999999999986543221 1 1111111112222233222233456678888898
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 000671 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1361)
Q Consensus 352 ~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~gl~v~ 427 (1361)
.+...+|+|.++++....++.++|++++.++.|++.+.++.. .+.......+.+++++++++ +.+++.+++ ++
T Consensus 90 ~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~---~~ 166 (585)
T TIGR01192 90 TLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMV---LG 166 (585)
T ss_pred HHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 899999999999987766677899999999999999876543 33333444444444433333 223332222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000671 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK----EFKWLSEAQLRKAYG 503 (1361)
Q Consensus 428 ~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~----El~~l~~~~~~~~~~ 503 (1361)
.+...+...+.+..++.+++..+..++..+.+.|.++|+++||.|+.|+.+.++.++..++ +.+..+.........
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334455666777777778888889999999999999999999998877666554433 222222221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh
Q 000671 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1361)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 583 (1361)
.++..... +.+..++++.+. ++.++.+.+++.+.++..+..|+..+...+..+.+++.+++|+.++++.++..++..
T Consensus 247 ~~~~~~~~--~~v~~~g~~~v~-~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 323 (585)
T TIGR01192 247 RMASTISM--MCILVIGTVLVI-KGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPA 323 (585)
T ss_pred HHHHHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCc
Confidence 11111111 112223333333 478999999999999999999999999999999999999999999987643221111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000671 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1361)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----- 658 (1361)
.....+...+.++++|++|+|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 401 (585)
T TIGR01192 324 DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401 (585)
T ss_pred cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence 111111223469999999999753 3689999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.+.+..+|+|.+|.+|++|.+||||||||++
T Consensus 402 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~ 481 (585)
T TIGR01192 402 VTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLA 481 (585)
T ss_pred CCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 4899999999999999999999865 5677888999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcC
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||||++++|++++||||||+||+++++.+.+.+. ...+++|+|++||+++.++.||+|++|++|++++.|+++++.+++
T Consensus 482 lARall~~p~ililDEpts~LD~~~~~~i~~~l~-~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 482 IARAILKNAPILVLDEATSALDVETEARVKNAID-ALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC
Confidence 9999999999999999999999999999876554 445789999999999999999999999999999999999999998
Q ss_pred chHHHHHHHh
Q 000671 810 TAFEQLVNAH 819 (1361)
Q Consensus 810 ~~~~~~~~~~ 819 (1361)
+.|.++...+
T Consensus 561 ~~y~~l~~~~ 570 (585)
T TIGR01192 561 GRFYKLLRRS 570 (585)
T ss_pred ChHHHHHHhC
Confidence 8888887543
No 31
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-59 Score=553.25 Aligned_cols=527 Identities=23% Similarity=0.302 Sum_probs=407.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 283 AICALLRTIAVVVGPLLLYAFVN-YSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1361)
Q Consensus 283 ~~~~~~~~~~~~~~P~ll~~~i~-~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~ 361 (1361)
.++.++..+....+-.++-..++ .+... ....-+.++++++++.++.+++...--...++.+.++|..+...+++|.
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~--~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQ--LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544443 22221 1222233455566666677776655556678899999999999999999
Q ss_pred hcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 362 LKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFH---LTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPF 437 (1361)
Q Consensus 362 L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~---~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l~~~~ 437 (1361)
.++....-+..++|++++++..-++.+..+.. |+. ..-..|+-+.++++...|.-|.-.+..++.+.+++ +.+
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM---ilv 160 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM---ILV 160 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHH
Confidence 99998777778899999999988888776433 332 22335666666666666655544444333333332 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFK----SLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTI 513 (1361)
Q Consensus 438 ~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~----~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~ 513 (1361)
++..++..+++++....=-..--+-|+|+.++|.|+-.+... +.-++.|+.-|+.||-.....+..-++...+ +
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls--i 238 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS--I 238 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 566666677777766666667778899999999999865554 4456788888888876554444433332222 1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhh-ccccCCC
Q 000671 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR-ISLQKSD 592 (1361)
Q Consensus 514 v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~-~~~~~~~ 592 (1361)
...+.+.+..+.+.++++-..+|.++-+---.-.|++.+...+..-.++..+.+.+..|++.+..+.+.... .....+.
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 222334555555524889888888888877778899999999999999999999999999887765432221 1112233
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ 659 (1361)
..+..+|.+|.|++++ ++++|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++| +
T Consensus 319 ~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 4455569999998753 799999999999999999999999999999999999999999999997 4
Q ss_pred EEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 660 iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
++||+|+|.++++|+||||+++++ .+++...++++..++.+.++. |+|-+|.|||+|.+|||||+||++||||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988 668899999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHHH
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 818 (1361)
++|||||||++||+++++.|.+. +....++||+|++||+++.+.++|+|++|++|+++++|+|+++.++++.|.+++.+
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~-l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQA-LQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHH-HHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence 99999999999999999988765 45556789999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 000671 819 HR 820 (1361)
Q Consensus 819 ~~ 820 (1361)
+.
T Consensus 555 q~ 556 (559)
T COG4988 555 QE 556 (559)
T ss_pred Hh
Confidence 43
No 32
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1e-59 Score=589.09 Aligned_cols=505 Identities=22% Similarity=0.281 Sum_probs=385.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 276 LKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1361)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~-~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~ 354 (1361)
|+.++...++.++..++..+.|+++..+++... ... ....-+.+++++++..++..++.....+...+++.++...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888999999999999998653 221 112222233333344444555444445566778888888888
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 000671 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLIC 430 (1361)
Q Consensus 355 ~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~gl~v~~l~ 430 (1361)
..+|+|.++++.....+.++|+++|.++.|++++.++.. .+..+....+.+++++++++ +.+++..+++++++++
T Consensus 81 ~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~- 159 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI- 159 (529)
T ss_pred HHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-
Confidence 999999999877666778999999999999999987543 34555555555544444443 3444443333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000671 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK----EFKWLSEAQLRKAYGTVI 506 (1361)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~----El~~l~~~~~~~~~~~~~ 506 (1361)
+...+.+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++.-++ ..+..+..........++
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 160 --FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345667777778888889999999999999999999999999887777554333 222222211111111111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhc
Q 000671 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1361)
Q Consensus 507 ~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~ 586 (1361)
..... +....++++.+. .+.+|.+.+++.+.+...+..|+..+...+..+.+++++.+|+.++++.++.+.+.. ..
T Consensus 238 ~~~~~--~~~~~~~~~~~~-~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~ 313 (529)
T TIGR02857 238 ATLSV--ALVAVYIGFRLL-AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PV 313 (529)
T ss_pred HHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CC
Confidence 11111 111223444444 468999999999999999999999999999999999999999999997543221111 11
Q ss_pred cccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------
Q 000671 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1361)
Q Consensus 587 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------- 658 (1361)
.....+.|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 314 -~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~ 391 (529)
T TIGR02857 314 -TAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA 391 (529)
T ss_pred -CCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH
Confidence 11123479999999999854 34799999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
+++||+|+|+++++||+|||.++.+ .++++..++++.+++.++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 392 ~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred HHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence 3999999999999999999999865 6788999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEE
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1361)
|++++|++++||||||+||+++++.+++.+. ...+++|+|+|||+++.++.||+|++|
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~-~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALR-ALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999987654 445789999999999999999999985
No 33
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.4e-59 Score=631.72 Aligned_cols=543 Identities=19% Similarity=0.205 Sum_probs=382.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 273 NVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352 (1361)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~ 352 (1361)
+.+++.+++..++.++..++..+.|+++..+++-+-+.......+..+++.+++..++..++.....|...+++.++-..
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 900 (1466)
T PTZ00265 821 FSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577777777778888888888888887633221110111222222222222333333222233445667777777
Q ss_pred HHHHHHHHHhcCCcccC--CCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 353 LMVAVYQKQLKLSSLGR--KKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1361)
Q Consensus 353 l~~~Iy~K~L~ls~~~~--~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l 429 (1361)
+...+|+|.++.+.... .++++|++++.++.|++.+.++.. .+..+...++.+++++++++. +.|- .+++++.+
T Consensus 901 lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~-~~~~--l~l~~~~~ 977 (1466)
T PTZ00265 901 MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFY-FCPI--VAAVLTGT 977 (1466)
T ss_pred HHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHH
Confidence 77788888888775432 357899999999999999887543 233333334444444433332 2221 11111111
Q ss_pred HHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHH
Q 000671 430 CGLLNVPFAKILQKC-QSEF-----------------MIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFK 491 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~-q~~~-----------------m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~ 491 (1361)
...+...+.+..+.. .++. .+..++....++|.++|||+||.|+-|+.+.++.++.-+...+
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~ 1057 (1466)
T PTZ00265 978 YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNK 1057 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 111112222222211 1111 1112344678999999999999999999988877665544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 492 WLSEAQLRKAYGTVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRIN 570 (1361)
Q Consensus 492 ~l~~~~~~~~~~~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~ 570 (1361)
..++.....+....+..+...+ ..++.+++..++..+.++.+.++.++..+.....++..+...+..+.+++++.+|+.
T Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~ 1137 (1466)
T PTZ00265 1058 GQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYY 1137 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222222111111111111 222333344444457899999988887766555678888899999999999999999
Q ss_pred HHhcccC-CCCchhhhcc---ccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCC
Q 000671 571 AFLLDHE-LNNDDVRRIS---LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 571 ~fL~~~e-~~~~~~~~~~---~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~ 646 (1361)
++++.+. .+..+..... .....+.|+++|++|+|+.+++.++|+|+||+|++|+.+||||++|||||||+++|+|+
T Consensus 1138 ~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265 1138 PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred HHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9997542 2111111111 11234579999999999865556899999999999999999999999999999999999
Q ss_pred ccC------------------------------------------------------CCcEEEEcC-------------e
Q 000671 647 IPK------------------------------------------------------ISGTVNLYG-------------S 659 (1361)
Q Consensus 647 ~~~------------------------------------------------------~~G~v~~~g-------------~ 659 (1361)
++| ++|+|.++| .
T Consensus 1218 ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~ 1297 (1466)
T PTZ00265 1218 YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNL 1297 (1466)
T ss_pred CCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhh
Confidence 998 699999988 4
Q ss_pred EEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 660 iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
||||+|+|.+|++||||||.+|.+ .++++++++++.+++++++..||+|.+|.||++|.+|||||||||+||||++++|
T Consensus 1298 i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265 1298 FSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred ccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999975 6788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhhcCeEEEEeC----CeEE-EecChHHHHh-cCch
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEG----GQIT-QSGNYQELLL-AGTA 811 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~----G~i~-~~g~~~~l~~-~~~~ 811 (1361)
+||||||||||||+++++.|.+.+.... .+++|+|+|||+++.++.||+|+||++ |+++ ++|+|+||++ .++.
T Consensus 1378 ~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~ 1457 (1466)
T PTZ00265 1378 KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGV 1457 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCCh
Confidence 9999999999999999999876654433 368999999999999999999999999 9955 8999999998 4888
Q ss_pred HHHHHHH
Q 000671 812 FEQLVNA 818 (1361)
Q Consensus 812 ~~~~~~~ 818 (1361)
|.++++.
T Consensus 1458 Y~~l~~~ 1464 (1466)
T PTZ00265 1458 YKKYVKL 1464 (1466)
T ss_pred HHHHHhh
Confidence 8888753
No 34
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.1e-57 Score=622.69 Aligned_cols=471 Identities=17% Similarity=0.196 Sum_probs=357.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1361)
Q Consensus 344 ~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~ 422 (1361)
..+.+.-..+-..+|++.++.+..--++.++|+|+|.++.|++.+.+... .+..+...++.++.++++++..-.+.+++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~ 1110 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVI 1110 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666677777665555567899999999999999987543 44455556666666655544332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1361)
Q Consensus 423 gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1361)
.++++++...+...+.+..+..++.....++...+..+|.++|+++||.|+||+.|.++..+..+...+...........
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1522)
T TIGR00957 1111 IPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRW 1190 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222333334444445556667778999999999999999999999887766555543332211111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Q 000671 503 -GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1361)
Q Consensus 503 -~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 581 (1361)
...+..+...++ +..+.+.+...+.++++.+..++.+...+..|+..+......+.++.+|.+|+.+|++.++.++.
T Consensus 1191 ~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1268 (1522)
T TIGR00957 1191 LAVRLECVGNCIV--LFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268 (1522)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 111111111111 11122223333679999999999999999999999999999999999999999999965432211
Q ss_pred hhhh-cccc--CCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC
Q 000671 582 DVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1361)
Q Consensus 582 ~~~~-~~~~--~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g 658 (1361)
..+. .+++ +.++.|+++|++|+|+++. +++|+|+||+|++||.+||||++|||||||+++|+|+++|++|+|.++|
T Consensus 1269 ~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG 1347 (1522)
T TIGR00957 1269 QIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347 (1522)
T ss_pred cccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECC
Confidence 1111 1111 2457899999999998653 4799999999999999999999999999999999999999999999998
Q ss_pred -------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
+|+||||+|.+|++||||||....++++++..++++.|++++.++.+|+|.+|++||+|.+||||||
T Consensus 1348 ~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1348 LNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred EEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 4999999999999999999984346888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 805 (1361)
||++||||++++|+|+|||||||+||+++.+.|.+ .++...+++|+|+|+|+++.+..+|+|+||++|+|+|.|+|+||
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~-~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQS-TIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999988765 45556689999999999999999999999999999999999999
Q ss_pred HhcCchHHHHHHH
Q 000671 806 LLAGTAFEQLVNA 818 (1361)
Q Consensus 806 ~~~~~~~~~~~~~ 818 (1361)
+++++.|.++.++
T Consensus 1507 l~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1507 LQQRGIFYSMAKD 1519 (1522)
T ss_pred HhCCCHHHHHHHH
Confidence 9988889888754
No 35
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9e-58 Score=527.59 Aligned_cols=520 Identities=23% Similarity=0.289 Sum_probs=394.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC-cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000671 289 RTIAVVVGPLLLYAFVNYSNRGE-EN--LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLS 365 (1361)
Q Consensus 289 ~~~~~~~~P~ll~~~i~~~~~~~-~~--~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls 365 (1361)
+-.+....|++.+..++-.++.+ .+ .......+.+.++..+..+++.-.-.+....+..++-.....-+|+..+.++
T Consensus 42 aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld 121 (591)
T KOG0057|consen 42 AKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLD 121 (591)
T ss_pred hhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35566778999998888775321 11 1111223334445555555554333344455666676677778888888887
Q ss_pred cccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000671 366 SLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP-GLVLFLICGLLNVPFAKILQK 443 (1361)
Q Consensus 366 ~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~-gl~v~~l~~~l~~~~~~~~~~ 443 (1361)
-....+..+|++.+.|.--...|.++.. .+..+....+++.+....++...|++..+ .+..+.....+...+..+-.+
T Consensus 122 ~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~ 201 (591)
T KOG0057|consen 122 LSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR 201 (591)
T ss_pred HHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH
Confidence 6666667899999999877777776543 23344445577888888899999986432 222223333344445677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 000671 444 CQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIE-SRREKEFKWLSEAQLRKA---YGTVIYWMSPTIISSVIF 519 (1361)
Q Consensus 444 ~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~-~~R~~El~~l~~~~~~~~---~~~~~~~~~p~~v~~~~f 519 (1361)
++++..++.|+..+.+-+.|.|-.+||.|+-|+.-.++.. .+++.|-..++-.+.... ....++. .| .+.+.|
T Consensus 202 fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs-v~--~~~im~ 278 (591)
T KOG0057|consen 202 FRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS-VA--LTFIMV 278 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH-HH--HHHHHH
Confidence 9999999999999999999999999999999987665553 344445333322221111 1111111 11 122223
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEe
Q 000671 520 LGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQE 599 (1361)
Q Consensus 520 ~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~ 599 (1361)
.+..-.....+|.+.....-+++..|+.|+..|......+.|+.+-++-....+..++... ....+....++.|+|+|
T Consensus 279 l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~--~~~~~i~~~~~~I~F~d 356 (591)
T KOG0057|consen 279 LGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ--EAALPIELFGGSIEFDD 356 (591)
T ss_pred HHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh--hccCCcccCCCcEEEEe
Confidence 3222222357899998889999999999999999999999998887776554433222111 00122333456799999
Q ss_pred eEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEecC
Q 000671 600 GNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQT 666 (1361)
Q Consensus 600 ~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~ 666 (1361)
++|+|.++ +++|+++||+|++||.+||+|+|||||||++++|+++++ .+|+|.++| .||||||+
T Consensus 357 V~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd 433 (591)
T KOG0057|consen 357 VHFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQD 433 (591)
T ss_pred eEEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCc
Confidence 99999864 469999999999999999999999999999999999999 999999998 39999999
Q ss_pred CcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 667 SWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 667 ~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
..+||.||.+||.+|.+ ...++..++++..++++-+..+|+|++|.+||+|..|||||||||+||||++.||+|+++||
T Consensus 434 ~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE 513 (591)
T KOG0057|consen 434 SVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE 513 (591)
T ss_pred ccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC
Confidence 99999999999999987 46778888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHH
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 817 (1361)
|||+||.++++.+++.+.. ...+||+|+|.|+++.++++|+|++++||++.+.|+++|+++..+.|.++..
T Consensus 514 aTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 514 ATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred cccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 9999999999999987654 6789999999999999999999999999999999999999997777777653
No 36
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.7e-57 Score=613.57 Aligned_cols=471 Identities=19% Similarity=0.244 Sum_probs=343.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1361)
Q Consensus 344 ~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~ 422 (1361)
+.+.+.-..+...+|++.++.+..--+++.+|+|+|.++.|++.+.+... .+..+....++++.+++++.....+..++
T Consensus 979 ~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~ 1058 (1622)
T PLN03130 979 MSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWA 1058 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566677777777766555678899999999999999987543 44455555555555544433322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1361)
Q Consensus 423 gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1361)
.+++++++..+...+.+..++.++..+..+....+..+|.++|+++||.|++|+.|.+...+..+...+...........
T Consensus 1059 ~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w 1138 (1622)
T PLN03130 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRW 1138 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222233333444444455666777899999999999999999988876665555443322111110001
Q ss_pred HHHHHHHHHHHHHHHH-HHH-HHHhCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000671 503 GTVIYWMSPTIISSVI-FLG-CALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1361)
Q Consensus 503 ~~~~~~~~p~~v~~~~-f~~-~~l~~~~~Lt-----~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 575 (1361)
.... ...+..++. +++ +.+..++..+ +..+-.+++....+..++..+......+.++.+|++|+.+|++.
T Consensus 1139 l~~~---l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~ 1215 (1622)
T PLN03130 1139 LAIR---LETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDL 1215 (1622)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0000 011111111 111 1222222111 23333344445556667777777778888999999999999976
Q ss_pred cCCCCchhh-hcccc--CCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCc
Q 000671 576 HELNNDDVR-RISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1361)
Q Consensus 576 ~e~~~~~~~-~~~~~--~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G 652 (1361)
++..+...+ ..+++ +.++.|+++|++|+|+++ .+++|+|+||+|++||.+||||++|||||||+++|+|+++|++|
T Consensus 1216 ~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G 1294 (1622)
T PLN03130 1216 PSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1294 (1622)
T ss_pred CCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 543221111 11111 234689999999999754 24799999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 653 TVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 653 ~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
+|.++| +|+||||+|.+|++||||||.++.+.++++..++++.|++.+.++.+|+|.+|.|||+|.+
T Consensus 1295 ~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~n 1374 (1622)
T PLN03130 1295 RILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374 (1622)
T ss_pred eEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCC
Confidence 999998 4999999999999999999999888899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
||||||||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+.+||+|+||++|+|+|.
T Consensus 1375 LSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~-I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999987654 5555679999999999999999999999999999999
Q ss_pred cChHHHHhc-CchHHHHHHHh
Q 000671 800 GNYQELLLA-GTAFEQLVNAH 819 (1361)
Q Consensus 800 g~~~~l~~~-~~~~~~~~~~~ 819 (1361)
|+|+||+++ ++.|.++.+..
T Consensus 1454 Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1454 DTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred CCHHHHHhCCCCHHHHHHHHc
Confidence 999999987 57888887654
No 37
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.6e-56 Score=608.46 Aligned_cols=471 Identities=19% Similarity=0.239 Sum_probs=342.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1361)
Q Consensus 344 ~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~ 422 (1361)
+.+.+.-..+...+|++.++.+..--+++++|+++|.++.|++.+.+... .+..+....++++.+++++.....+..++
T Consensus 976 ~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 1055 (1495)
T PLN03232 976 SSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWA 1055 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445566667777665555677899999999999999987543 33344444455555544443332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1361)
Q Consensus 423 gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1361)
.++++++...+.....+..+..++..+..+..-.+..+|.++|+++||.|++|+.|.++.++..+...+...........
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1135 (1495)
T PLN03232 1056 IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRW 1135 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111111222222233344445556667778899999999999999999998877666555444322111111110
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHHhCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000671 503 GTVIYWMSPTIISSV-IFLG-CALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1361)
Q Consensus 503 ~~~~~~~~p~~v~~~-~f~~-~~l~~~~~Lt-----~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 575 (1361)
.... ...+..++ .+++ +.+...+.+. ++.+-.+++....+..|+..+...+..+..+.+|.+||.++++.
T Consensus 1136 l~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~ 1212 (1495)
T PLN03232 1136 LTIR---LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDL 1212 (1495)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0000 00111111 1111 1222212221 22222345555667788999999999999999999999999975
Q ss_pred cCCCCchhhh-cccc--CCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCc
Q 000671 576 HELNNDDVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1361)
Q Consensus 576 ~e~~~~~~~~-~~~~--~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G 652 (1361)
++..+...+. .+++ +..+.|+++|++|+|+++ .+++|+|+||+|++||.+||||++|||||||+++|+|+++|++|
T Consensus 1213 ~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G 1291 (1495)
T PLN03232 1213 PSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG 1291 (1495)
T ss_pred CccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4322211111 1111 234679999999999754 35799999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 653 TVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 653 ~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
+|.++| +|+||||+|.+|++||||||.++.++++++..++++.+++.+.++.+|+|.+|++|++|.+
T Consensus 1292 ~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1371 (1495)
T PLN03232 1292 RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371 (1495)
T ss_pred eEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCC
Confidence 999998 4999999999999999999999888899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
||||||||++||||++++|+|+|||||||+||+++.+.|.+ .++...+++|+|+|||+++.+.+||+|+||++|+|+|.
T Consensus 1372 LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~-~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQR-TIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999998765 45555689999999999999999999999999999999
Q ss_pred cChHHHHhcCc-hHHHHHHHh
Q 000671 800 GNYQELLLAGT-AFEQLVNAH 819 (1361)
Q Consensus 800 g~~~~l~~~~~-~~~~~~~~~ 819 (1361)
|+|+||+++++ .|.++.++.
T Consensus 1451 Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1451 DSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred CCHHHHHhCCCCHHHHHHHHh
Confidence 99999998764 788887653
No 38
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-56 Score=511.68 Aligned_cols=473 Identities=23% Similarity=0.349 Sum_probs=354.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 000671 340 FGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVL--FGVVG 417 (1361)
Q Consensus 340 ~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L--~~~lG 417 (1361)
..+.....|+-+.+.-.+|+|....+.........|++.|.+..|++.++++.......|...+-++.+..+. |.-++
T Consensus 80 lvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~ 159 (573)
T COG4987 80 LVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIP 159 (573)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3455667788889999999999999988777888999999999999999998776666665544443333332 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 418 LGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ 497 (1361)
Q Consensus 418 ~~~l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~ 497 (1361)
.+.+.|+...++.+.+...+.+..++..++..+.+..=-+-..+.+.|....+++|-++.+.+.+++.-+.=.+.-+|.+
T Consensus 160 ~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~ 239 (573)
T COG4987 160 LALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQA 239 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444444555666666666666666666667889999999999999999887766543222111111211
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000671 498 LRKAYGTVI-YWMSPTIISSVIFLGCALTGSAPLNA-STIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1361)
Q Consensus 498 ~~~~~~~~~-~~~~p~~v~~~~f~~~~l~~~~~Lt~-~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 575 (1361)
.......++ ....-.+++...+......+.+..+. ..+...+..|-.+..-...-|.++....|+..|.+|+.+.+.+
T Consensus 240 ~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q 319 (573)
T COG4987 240 RFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQ 319 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccC
Confidence 111111111 11122222212222222222233432 2222222223222211122336778888999999999998876
Q ss_pred cCCCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEE
Q 000671 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1361)
Q Consensus 576 ~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~ 655 (1361)
++....+ +...+ ..+..++++|++|+|+++ +.++|+|+||++++||.+||+|++|||||||++.|.|-++|++|+|.
T Consensus 320 ~~e~~~~-~~~~~-~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~ 396 (573)
T COG4987 320 KPEVTFP-DEQTA-TTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396 (573)
T ss_pred CcccCCC-ccccC-CccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeee
Confidence 5433222 11111 122279999999999976 45799999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 656 ~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.+| .+++++|.+.+|++|+|||+..++| .++|...+++++.+|++-++..|+|.+|.+||.|..||
T Consensus 397 ~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LS 476 (573)
T COG4987 397 LNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLS 476 (573)
T ss_pred ECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCC
Confidence 988 4899999999999999999999987 46788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecC
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1361)
||||||++|||++.+|+++++|||||.|||+.|++++.+.+. ...+|||+|+|||++..++.+|+|++|++|+++++|+
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~-~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF-EHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHH-HHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCC
Confidence 999999999999999999999999999999999999987654 4567999999999999999999999999999999999
Q ss_pred hHHHHhcCchHHHHH
Q 000671 802 YQELLLAGTAFEQLV 816 (1361)
Q Consensus 802 ~~~l~~~~~~~~~~~ 816 (1361)
|++++.+++.|.++.
T Consensus 556 ~~~Ll~~~g~~~~l~ 570 (573)
T COG4987 556 HAELLANNGRYKRLY 570 (573)
T ss_pred HHhhhccccHHHHHh
Confidence 999999888888765
No 39
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.9e-55 Score=598.94 Aligned_cols=466 Identities=15% Similarity=0.180 Sum_probs=348.8
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC 430 (1361)
Q Consensus 352 ~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~ 430 (1361)
.+-..+|++.++.+..-.+++++|+|+|.++.|++.+.+.+. .+..+....+.++.++++++....+..++.++++++.
T Consensus 1032 ~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~ 1111 (1560)
T PTZ00243 1032 NMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLY 1111 (1560)
T ss_pred HHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777666555677899999999999999988543 3445555555555555554433322222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000671 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIYWM 509 (1361)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~-~~~~~~~ 509 (1361)
..+...+.+..+..++.....++.-.+..+|.++|+++||.|++|+.|.++..+.-+...+...+....... ....-..
T Consensus 1112 ~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l 1191 (1560)
T PTZ00243 1112 YRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFL 1191 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333444445555555666777789999999999999999999988777654433332211111111111 1111111
Q ss_pred HHHHHHHH-HHHHH-HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-ch----
Q 000671 510 SPTIISSV-IFLGC-ALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN-DD---- 582 (1361)
Q Consensus 510 ~p~~v~~~-~f~~~-~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~-~~---- 582 (1361)
...++.++ .++.+ ++.+...++++.+..++.+...+..|+..+...+..+.++.+|++||.+|++..+.++ ..
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~ 1271 (1560)
T PTZ00243 1192 SNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEE 1271 (1560)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccc
Confidence 11111111 11221 1223345788887777777788889999999999999999999999999995321110 00
Q ss_pred -------------------hhhc------cccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHH
Q 000671 583 -------------------VRRI------SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1361)
Q Consensus 583 -------------------~~~~------~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKS 637 (1361)
.+.. +.....+.|+|+|++|+|+++ .+++|+|+||+|++||.++|||++|||||
T Consensus 1272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKS 1350 (1560)
T PTZ00243 1272 VDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKS 1350 (1560)
T ss_pred ccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHH
Confidence 0000 001124579999999999764 34699999999999999999999999999
Q ss_pred HHHHHHhCCccCCCcEEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhc
Q 000671 638 SLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINN 704 (1361)
Q Consensus 638 TLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~ 704 (1361)
||+++|+|+++|++|+|.++| .|+||||+|.+|++||||||..+.++++++..++++.|++.+.++.
T Consensus 1351 TLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~ 1430 (1560)
T PTZ00243 1351 TLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVAS 1430 (1560)
T ss_pred HHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhh
Confidence 999999999999999999998 4999999999999999999998777889999999999999999999
Q ss_pred CCCCCCccccCCCCCCChHHHHHHHHHHHHccC-CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHh
Q 000671 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND-ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1361)
Q Consensus 705 l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~-~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 783 (1361)
+|+|.+|.+|++|.+||||||||++||||++++ |+|+|||||||+||+++.+.|.+ .+....+++|+|+|+|+++.+.
T Consensus 1431 lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~-~L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1431 ESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQA-TVMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred CcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHH-HHHHHCCCCEEEEEeccHHHHH
Confidence 999999999999999999999999999999996 89999999999999999999865 4455667899999999999999
Q ss_pred hcCeEEEEeCCeEEEecChHHHHhc-CchHHHHHHHh
Q 000671 784 EVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNAH 819 (1361)
Q Consensus 784 ~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 819 (1361)
+||+|+||++|+|++.|+|+||+++ ++.|.++++..
T Consensus 1510 ~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1510 QYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred hCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999999999999974 77898887653
No 40
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.3e-54 Score=540.16 Aligned_cols=510 Identities=17% Similarity=0.145 Sum_probs=363.2
Q ss_pred HHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 271 ITN-VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1361)
Q Consensus 271 l~~-~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1361)
+++ .+++.++...++.++..++..+.|.++..+++...... . ....+.+++++. ..++.....+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-Q--GSLFSFGGLCLL---ALLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c--hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 455 67778888888888888999999998887765311010 0 111111122222 1222222233456678888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1361)
Q Consensus 350 R~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l 429 (1361)
...+...+|+|.++++.....++++|+++|.++.|++.+.++...+..+....+.++++++++++.-...+++.++++.+
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888999999999887655667899999999999999988665444444444444444444433221112222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 000671 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKSLI----ESRREKEFKWLSEAQLRKAYG 503 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~--~f~~~i----~~~R~~El~~l~~~~~~~~~~ 503 (1361)
.+.+..+..++.++...+..+..++..+.+.|.++|++++|.|+.|+ ...++. ++.|+...+..+.. ....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 241 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIF---IAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHH
Confidence 22223334455666667777788888999999999999999999854 223333 33333222211111 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch-
Q 000671 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD- 582 (1361)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~- 582 (1361)
.+........+.++.+.+. .. +.++.+.+++.+.+...+..|+..+...+..+.++++|.+||.++++.++.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~--~~-~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 242 NFGQLLFFLLIGCALFAAA--MF-ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHHHHHHHHHHHHHHHH--Hh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 1111111111111111111 11 4789999888888899999999999999999999999999999998532111000
Q ss_pred --hhhc-----cccCCCCcEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcE
Q 000671 583 --VRRI-----SLQKSDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1361)
Q Consensus 583 --~~~~-----~~~~~~~~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~ 653 (1361)
.+.. +.....+.|+++|++|+|++++ ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 0000 1112235799999999997532 236999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 654 v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
|.++| .++|++|+|+++++|+++|+ ..+.++++..++++.+++.++++.+|+|++|. .+|
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~L 471 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TAL 471 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccC
Confidence 99987 38999999999999999995 23456778889999999999999999999884 789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
|||||||++||||++++|+++|||||||+||+++++.+.+.+.+.. .+++|+|++||+++.+..||+|++|++|++++.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999987766433 468999999999999999999999999999864
No 41
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.3e-55 Score=548.77 Aligned_cols=468 Identities=24% Similarity=0.325 Sum_probs=396.9
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC--CchhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000671 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PK--ITSGILI-GVYAGVSTASAVFVYFRSFFAA 960 (1361)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~--~~~~~~l-~iy~~l~~~~~i~~~~~~~~~~ 960 (1361)
+..++.++...+. .+.-++++.+..+.+.++.++.....+|. +. .....++ ..+++.++...++.++|.+...
T Consensus 142 ~~~f~~~~~~~~~--~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 142 LSWFIPLLFKYRR--LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred hHhHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555543322 22223334444556666777777666553 11 1222223 3455566778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000671 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1361)
Q Consensus 961 ~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv 1040 (1361)
+.+.+....+-.++++|+++.|++||+++++|++++|+. |++.|.+.+.......+..++..++.+++|++.+|+++++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 7899999998888888888888888899999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000671 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1361)
Q Consensus 1041 ~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1361)
++..++++..+.....+..|+..+..-+..+...++..|++.|+.|||+.+.|+++..+.++..+++.+..+.......|
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88777777776666666666666666667777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000671 1121 LILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1361)
Q Consensus 1121 l~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~ 1199 (1361)
......++..+..+.+.++ +.++..|.+|.|.+..+.+.+..+++|+..+++.+.+++....+.||+.+.++.|+|.+.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 9988888888877666665 456788999999999999999999999999999999999999999999999999998642
Q ss_pred CCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCe
Q 000671 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1361)
Q Consensus 1200 ~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGv 1279 (1361)
++.+...|+.+|+|+|+||+|+|+++.|+||+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+
T Consensus 459 ---~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 459 ---DKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred ---ccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 22244556789999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCc---CCCCCCcccccCCchhhhhhccccc
Q 000671 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTP---NSRNSRIDIDFPTFNKFCCRIIKTK 1355 (1361)
Q Consensus 1280 DI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 1355 (1361)
|++++++++||++|++||||++||+|||||||.-.+ +.+||||++|++.|+ .-.+--.|.|++=+|+|.|+|.|||
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 999999999999999999999999999999996333 478999999999985 3446667888888999999999999
Q ss_pred ccee
Q 000671 1356 QLVT 1359 (1361)
Q Consensus 1356 ~~~~ 1359 (1361)
|++.
T Consensus 616 Qrla 619 (709)
T COG2274 616 QRLA 619 (709)
T ss_pred HHHH
Confidence 9864
No 42
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-56 Score=499.53 Aligned_cols=456 Identities=22% Similarity=0.346 Sum_probs=338.8
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000671 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWF-HLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICG-- 431 (1361)
Q Consensus 355 ~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~-~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~-- 431 (1361)
..+|++...+|-.-.-...+||+...|..-...+. +..++ ..+--..+.+++++ .|..+-.-...|++|++.+.
T Consensus 296 ~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~--vYF~~~Fn~wFgLIVfl~m~lY 372 (790)
T KOG0056|consen 296 TELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM--VYFFIKFNIWFGLIVFLMMLLY 372 (790)
T ss_pred HHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh--hhhhhhHhHHHHHHHHHHHHHH
Confidence 34555555554332223457888877765444433 22221 22222234445554 33333333445555443322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 432 -LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK----FKSLIESRREKEFKWLSEAQLRKAYGTVI 506 (1361)
Q Consensus 432 -~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~----f~~~i~~~R~~El~~l~~~~~~~~~~~~~ 506 (1361)
.+...+...-.++|++....-.+--....+.|-|..+||.|+-|+. +.+.|.+..+.|-|.+....+++.....+
T Consensus 373 ~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~I 452 (790)
T KOG0056|consen 373 CYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGI 452 (790)
T ss_pred hheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2222234444566666554444444456677888999999998864 45556666666655444333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhc
Q 000671 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1361)
Q Consensus 507 ~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~ 586 (1361)
.... +.....+.+|... .+.+|.+...-.....-.|..||+.+......+....+-++|+.+.|++++.-.+...-.
T Consensus 453 i~lg--ll~gsll~aY~Vt-~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~ 529 (790)
T KOG0056|consen 453 IGLG--LLAGSLLCAYRVT-EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAP 529 (790)
T ss_pred hhhH--Hhhhhheeeeeee-eccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCC
Confidence 2111 1122223334333 478888886666777888999999999999999999999999999987654221111112
Q ss_pred cccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------
Q 000671 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1361)
Q Consensus 587 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------- 658 (1361)
+.....+.|+++|++|+|+++ +|+|+||||++++|+.+|+|||+|+||||+++.+.++++..+|.|.++|
T Consensus 530 pl~~~~G~i~fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ 607 (790)
T ss_pred CccccCCeEEEEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH
Confidence 223356889999999999875 6899999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
+||.||||..+||.||..||.|+++ ...|+..++.++.++++.+-.+|+|+.|.+||+|..||||+||||++||
T Consensus 608 ~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 4999999999999999999999998 4567778889999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc-Cch
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTA 811 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~ 811 (1361)
+++++|.|++|||.|||||.++++.| +.++.....++|.|+|.|+++.+-+||.|++++||+|+|.|+|+|+..+ ++.
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~ 766 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGA 766 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCc
Confidence 99999999999999999999999997 5667777789999999999999999999999999999999999999987 788
Q ss_pred HHHHHHHh
Q 000671 812 FEQLVNAH 819 (1361)
Q Consensus 812 ~~~~~~~~ 819 (1361)
|+++.+.+
T Consensus 767 Ya~MWq~q 774 (790)
T KOG0056|consen 767 YADMWQAQ 774 (790)
T ss_pred HHHHHHHH
Confidence 99988654
No 43
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.2e-53 Score=578.66 Aligned_cols=471 Identities=19% Similarity=0.192 Sum_probs=348.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1361)
Q Consensus 344 ~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~ 422 (1361)
+.+.+.-..+...+|++.++.+..-.++..+|+|+|.++.|++.+.+... .+..+....+.+++++++++...++.+++
T Consensus 951 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~ 1030 (1490)
T TIGR01271 951 HTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIA 1030 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666655444567899999999999999987543 34455555555665555555444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000671 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQL-RKA 501 (1361)
Q Consensus 423 gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~-~~~ 501 (1361)
.++++++...+...+.+..+..++.....+....+...|.++|+.+||.|+||+.|.++..+.-+...+....... ...
T Consensus 1031 ~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1110 (1490)
T TIGR01271 1031 AIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRW 1110 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333333344444555555667777888999999999999999999999887776654432211111000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Q 000671 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1361)
Q Consensus 502 ~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 581 (1361)
+...+....-.++..+.+.. ++....+++.+-.++++...+..++..+......+..+.+|.+||.+|++.++..+.
T Consensus 1111 l~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~ 1187 (1490)
T TIGR01271 1111 FQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPR 1187 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 11000000101111111111 111224455555566666667788888888888999999999999999965432211
Q ss_pred hhh--------------h-ccc--cCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHh
Q 000671 582 DVR--------------R-ISL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644 (1361)
Q Consensus 582 ~~~--------------~-~~~--~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ll 644 (1361)
..+ . .++ .+..+.|+++|++|+|+++ .+++|+|+||+|++||.++|||++|||||||+++|+
T Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~ 1266 (1490)
T TIGR01271 1188 PSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL 1266 (1490)
T ss_pred ccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 000 0 000 1234689999999999864 357999999999999999999999999999999999
Q ss_pred CCccCCCcEEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCc
Q 000671 645 GEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711 (1361)
Q Consensus 645 g~~~~~~G~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t 711 (1361)
|+++ .+|+|.++| +++|+||+|.+|++||||||....++++++..++++.|+|.+.+..+|+|.+|
T Consensus 1267 rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt 1345 (1490)
T TIGR01271 1267 RLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDF 1345 (1490)
T ss_pred hhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccc
Confidence 9997 799999988 49999999999999999999877778899999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEE
Q 000671 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1361)
Q Consensus 712 ~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1361)
.||++|.+||||||||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|||+++.+..+|+|++|
T Consensus 1346 ~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~-L~~~~~~~TvI~IaHRl~ti~~~DrIlvL 1424 (1490)
T TIGR01271 1346 VLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT-LKQSFSNCTVILSEHRVEALLECQQFLVI 1424 (1490)
T ss_pred ccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999988655 45556789999999999999999999999
Q ss_pred eCCeEEEecChHHHHhcCchHHHHHHHhh
Q 000671 792 EGGQITQSGNYQELLLAGTAFEQLVNAHR 820 (1361)
Q Consensus 792 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 820 (1361)
++|+|++.|+|++|+++++.|.++.++..
T Consensus 1425 ~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1425 EGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred ECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999988888998886543
No 44
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.6e-53 Score=487.23 Aligned_cols=527 Identities=22% Similarity=0.297 Sum_probs=409.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1361)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1361)
...+....++..++..+++..+-.++....|+.+-..-+-+=. ..+...-..+.+.....++++.++..--.+...|+|
T Consensus 13 ~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~-S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 13 LLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLP-SRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667778888888888888888999877655443211 122222333444444445556666544456678999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF------WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1361)
Q Consensus 347 ~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~------~~~~~w~~plqi~va~~~L~~~lG~~~ 420 (1361)
.++-..|..-||.-+++.....+......+.. .|.+.+..|.. +|...| .|+=++++ +++.-++|+-+
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW-~P~yl~v~-fl~Hp~lG~~a 165 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW-MPLYLAVI-FLFHPWLGLIA 165 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch-HHHHHHHH-HHHHHHHHHHH
Confidence 99999999999998864433222222223333 36666655433 233344 56644443 45667899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500 (1361)
Q Consensus 421 l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~ 500 (1361)
++|.++++.+..+|- +..++--++..+..-+|...++-.+.|..+|+.+|..+...++-.+...+-+++..+..-..
T Consensus 166 ~~ga~iLv~la~ln~---~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNE---RATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999888887777763 44455566777788899999999999999999999999999998888887777666554433
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000671 501 AY-GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1361)
Q Consensus 501 ~~-~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~ 579 (1361)
.. +...-..--.+-+.+.=.+.+++-++.+|++.++.+--+..-.-.|+...-....++..|+.|.+|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 22 21111111111222222233344457899999998877777777899999999999999999999999999754322
Q ss_pred CchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-
Q 000671 580 NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658 (1361)
Q Consensus 580 ~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g- 658 (1361)
.++.+.+.+++.+.++++++.=+ +..+|+++|+||++++||-++|+||+|||||||.++|.|..+|.+|.|.++|
T Consensus 323 ---~~~m~LP~P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga 398 (580)
T COG4618 323 ---AERMPLPAPQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA 398 (580)
T ss_pred ---cCCCCCCCCCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch
Confidence 23345566788999999999654 4467999999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEecCCcCCCCCHHHHhh-cCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ------------SIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ------------~iayv~Q~~~i~~~ti~eni~-~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.|||.||+-.+|.+||.|||. |+.+.|++++-++.+..+.++-+-.+|+|++|.||+.|..||||||
T Consensus 399 ~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 599999999999999999997 6667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|||+||||+|.||.+++||||-|+||..-++.+.+.+.....+|.|+|+|||+++.+..+|+|.+|+||++...|+.+|+
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 99999999999999999999999999999999988777667789999999999999999999999999999999999998
Q ss_pred Hh
Q 000671 806 LL 807 (1361)
Q Consensus 806 ~~ 807 (1361)
++
T Consensus 559 La 560 (580)
T COG4618 559 LA 560 (580)
T ss_pred HH
Confidence 74
No 45
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.9e-54 Score=539.84 Aligned_cols=413 Identities=18% Similarity=0.185 Sum_probs=344.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHH
Q 000671 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023 (1361)
Q Consensus 944 l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~ 1023 (1361)
+.++..++.++..++....+.+...+++.++++++++.|.+||++.++|++++|+++|++.++..+...+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888888899999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHH
Q 000671 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFV-QRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLK 1102 (1361)
Q Consensus 1024 i~~i~v~~~~~~~l~lv~ip~~~~~~~~-~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~ 1102 (1361)
++.++++++.+|.+.++++..++++.++ ..++.+..++..+...+..+.+.+++.|+++|+++||+|+.|+++.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 8888999999999988776655554443 344445556666666677788999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000671 1103 LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI 1181 (1361)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~ 1181 (1361)
..++..+..........+......++..+..+.+.++ +..+..|.+++|.+..++.|+..+..++..+.+.+.++++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVR 301 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877776666655555554454444433333222 344567899999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHH
Q 000671 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261 (1361)
Q Consensus 1182 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~ 1261 (1361)
.|.+|+.++++.++|.+... ...+...+|..|+|+|+||+|+|+++. ++|+|+||+|+|||+|||||+||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 302 AAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999998776543211 111112344567899999999997544 5999999999999999999999999999999
Q ss_pred HHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCc
Q 000671 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRI 1337 (1361)
Q Consensus 1262 ~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~ 1337 (1361)
+|.|+|+|++|+|+|||+||+++ .+++|++|++|||||+||+|||||||...+ +++|||+++|++.|+-.. +--=
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 458 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD 458 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 99999999999999999999999 999999999999999999999999998643 589999999999986321 1223
Q ss_pred ccccCCchhhhhhcccccccee
Q 000671 1338 DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1338 ~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|+|+.-++.|.|+|.||||++.
T Consensus 459 GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 459 GLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred cccchhccccCcCCHHHHHHHH
Confidence 6788889999999999999974
No 46
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.8e-52 Score=524.41 Aligned_cols=506 Identities=16% Similarity=0.166 Sum_probs=348.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 267 VRKVITNVYLKENIFIAICALLRTIAVVVG-PLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1361)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1361)
+++.+++.+++.++...++.++..++..+. |++.+.+++..... ...-+.+++.+++..++..+ ..+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMAVTLG----SQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 455667777888888888888888887764 67777777644221 11111111111122111111 22233445
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1361)
Q Consensus 346 ~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~ 425 (1361)
+.++...+...+|+|.++++.....++++|+++|.++.|++.+..+...+..++...+.++++++++++.-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56666666777888888877655567789999999999999998765556667777777777776666543333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--h----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQS--W----EEKFKSLIESRREKEFKWLSEAQLR 499 (1361)
Q Consensus 426 v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~--w----E~~f~~~i~~~R~~El~~l~~~~~~ 499 (1361)
++.+...+...+.++.++..++.++..+++.+.++|.++|++++++.. . ++.|.+..++.++...+..+ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT----F 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH----H
Confidence 333333445556777788888889999999999999999999997433 2 23334434444433332111 1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000671 500 KAYGTVIYWMSPTIISS-VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHEL 578 (1361)
Q Consensus 500 ~~~~~~~~~~~p~~v~~-~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 578 (1361)
.............++.. ..+.... .+...++...++. .....+..|+..+...+..+.+++++.+|+.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 232 HLSAVNWSNIMMLGAIGLVFYMANS-LGWADTNVAATYS--LTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhcCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 11111110011111111 1111111 1112222222222 222335689999999999999999999999999765432
Q ss_pred CCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC
Q 000671 579 NNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1361)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g 658 (1361)
++.. +. ...+..+.++++|++|+|+.+ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 309 ~~~~-~~-~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 384 (547)
T PRK10522 309 AEFP-RP-QAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (547)
T ss_pred cccc-cc-cccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 2101 11 111112479999999999743 4699999999999999999999999999999999999999999999987
Q ss_pred -------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
+++|++|+|.++++|++|| +...++++.+++++.+++..+++. ++|. .+|.+||||||
T Consensus 385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~ 455 (547)
T PRK10522 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQK 455 (547)
T ss_pred EECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHH
Confidence 4999999999999999999 445667778888888877766542 2221 24789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
||++||||++++|++++||||||+||+++++.+.+.+..... +++|+|+|||+++.+..||+|++|++|++++.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999998877654432 58999999999999999999999999999876
No 47
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.4e-53 Score=548.14 Aligned_cols=468 Identities=20% Similarity=0.207 Sum_probs=373.8
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITS---GILIGVYAGVSTASAVFVYFRSFFAA 960 (1361)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~---~~~l~iy~~l~~~~~i~~~~~~~~~~ 960 (1361)
++.+++|++..+. .+...+++.++...+.+..+++.+..++.- .... ...+.+++++.++..++.+++.+...
T Consensus 149 ~~~l~~~~~~~~~--~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (711)
T TIGR00958 149 LFRLLGLSGRDWP--WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFN 226 (711)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556554332 233344444555566667777776655421 1111 12234455556667778888888899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000671 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1361)
Q Consensus 961 ~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv 1040 (1361)
..+.+...++|.++++++++.|++||+++++|+++||+++|++.++..+...+..++..++.+++.+++++..+|.+.++
T Consensus 227 ~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~ 306 (711)
T TIGR00958 227 YTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMV 306 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000671 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1361)
Q Consensus 1041 ~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1361)
.+..+++..++.+++.+..++..+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+...........
T Consensus 307 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (711)
T TIGR00958 307 TLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAG 386 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777778888899999999999999999999999999999998877665544333332
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000671 1121 LILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1361)
Q Consensus 1121 l~~rl~~l~~l~~~~~-~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~ 1199 (1361)
......++..+..+++ .+.+.++..|.+++|.+..++.|...+..++..+...+.++++...+.+|+.++++.+++.+.
T Consensus 387 ~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 466 (711)
T TIGR00958 387 YLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL 466 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 2222222222222222 222344568999999999999999999999999999999999999999999999987766432
Q ss_pred CCCCCCCCCCCCCcceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcC
Q 000671 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1361)
Q Consensus 1200 ~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDG 1278 (1361)
. . ....++.+|.|+|+||+|+|+.+ .++||+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||
T Consensus 467 ~--~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 542 (711)
T TIGR00958 467 T--G--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542 (711)
T ss_pred C--C--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 1 1 11224567899999999999642 24699999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhhcCceecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccc
Q 000671 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKT 1354 (1361)
Q Consensus 1279 vDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 1354 (1361)
+|+++++.+++|++|++|||||++|+|||||||... .+.+|||+++|++.++-.. +---|+|+..+++|.++|.||
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 622 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622 (711)
T ss_pred EEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence 999999999999999999999999999999999743 3578999999999986321 122267888899999999999
Q ss_pred cccee
Q 000671 1355 KQLVT 1359 (1361)
Q Consensus 1355 ~~~~~ 1359 (1361)
||++.
T Consensus 623 kQRla 627 (711)
T TIGR00958 623 KQRIA 627 (711)
T ss_pred HHHHH
Confidence 99974
No 48
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.7e-53 Score=536.66 Aligned_cols=448 Identities=21% Similarity=0.299 Sum_probs=364.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC--C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000671 906 VLAQSGFVGLQAAATYWLAYAIQIPK--I-TSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982 (1361)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~~--~-~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap 982 (1361)
+++.++...+....+++++..++... . ....+...++++.++..++.++..+...+.+.+...++|.++++++++.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 99 (567)
T COG1132 20 ILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLP 99 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33334445556666666665443321 1 11123334445555667777777788888889999999999999999999
Q ss_pred CccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062 (1361)
Q Consensus 983 ~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l 1062 (1361)
++||+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++.+...+++.+...++.+..++.
T Consensus 100 ~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (567)
T COG1132 100 LSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKL 179 (567)
T ss_pred HHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988866666677888888899999999998888777777777777777777888
Q ss_pred HHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Q 000671 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LV 1141 (1361)
Q Consensus 1063 ~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~v 1141 (1361)
.+......+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+....+... ..
T Consensus 180 ~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (567)
T COG1132 180 SRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGF 259 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999988888888877766655545555555444444444443333332 33
Q ss_pred hhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEE
Q 000671 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1361)
Q Consensus 1142 l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nV 1221 (1361)
.+..+.++.|.+..++.|...+..++..+...+..++....|.||+.++++.+++... ...+ .++..|+|+|+||
T Consensus 260 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~v 334 (567)
T COG1132 260 LVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENV 334 (567)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEE
Confidence 4457789999999999999999999999999999999999999999999987665321 1111 3456789999999
Q ss_pred EEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCccc
Q 000671 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1361)
Q Consensus 1222 s~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~ 1301 (1361)
+|+|+++. +||+|+||+|+|||+||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+
T Consensus 335 sf~y~~~~-~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~ 413 (567)
T COG1132 335 SFSYPGKK-PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPL 413 (567)
T ss_pred EEEcCCCC-ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccce
Confidence 99997643 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCCC-CCHHHHHHHHhhCcCCC-CCCc--ccccCCchhhhhhcccccccee
Q 000671 1302 LFRGSVRTNLDPLGL-YSDDEIWKVSQLTPNSR-NSRI--DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1302 LF~GTIR~NLdP~~~-~sDeeI~~AL~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||+||||+||++.++ +||||+++|+++|+-.. -... |.|+..++.|.++|.||||++.
T Consensus 414 LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 414 LFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 999999999998765 79999999999993111 1111 6788888999999999999975
No 49
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.5e-52 Score=538.99 Aligned_cols=447 Identities=20% Similarity=0.234 Sum_probs=365.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCCc--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000671 907 LAQSGFVGLQAAATYWLAYAIQI--PKIT--S-GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKA 981 (1361)
Q Consensus 907 ~~~~~~~~~~~~~~~wl~~~~~~--~~~~--~-~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~a 981 (1361)
++.++...+.+..++.+...++. +... . ..+...++++.++..++.+++.+.....+.+...+++.+++++++++
T Consensus 143 ~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~ 222 (686)
T TIGR03797 143 AMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRL 222 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444445556666666555442 1111 1 12234455556667788889999999999999999999999999999
Q ss_pred CCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 982 PMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARE 1061 (1361)
Q Consensus 982 p~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~ 1061 (1361)
|++||++.++|++++|++ |++.+++.+...+...+...+.+++.++++++.+|++.++++.+++++..+..++.+..++
T Consensus 223 ~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 301 (686)
T TIGR03797 223 PVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVR 301 (686)
T ss_pred CHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 8999998888777666666666777788888999998887776666655555555555555
Q ss_pred HHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Q 000671 1062 LIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-L 1140 (1361)
Q Consensus 1062 l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~ 1140 (1361)
..+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......|......++..+..+++.++ +
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666778999999999999999999999999999999999888888888777787766666655444333333 3
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEE
Q 000671 1141 VLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQ 1220 (1361)
Q Consensus 1141 vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~n 1220 (1361)
.++..|.++.|.+..+.+++..+..|+..+...+.+++....+.+|+.++++.|+|.+. +..++ .+..|.|+|+|
T Consensus 382 ~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~n 456 (686)
T TIGR03797 382 SLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDR 456 (686)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEE
Confidence 45568999999999999999999999999999999999999999999999987766431 11111 23468999999
Q ss_pred EEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcc
Q 000671 1221 LKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300 (1361)
Q Consensus 1221 Vs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp 1300 (1361)
|+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+|||+|+++++.+++|++|++|||||
T Consensus 457 vsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 536 (686)
T TIGR03797 457 VTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNG 536 (686)
T ss_pred EEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCC
Confidence 99999766667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCCCCCHHHHHHHHhhCcCC---CCCCcccccCCchhhhhhcccccccee
Q 000671 1301 TLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNS---RNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1301 ~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|||||||..+++++|||+|+|++.++-. ..---|+|+.-++.|.|+|.||||++.
T Consensus 537 ~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRia 598 (686)
T TIGR03797 537 RLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLL 598 (686)
T ss_pred ccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 99999999999876668999999999998632 233347788888999999999999974
No 50
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.9e-52 Score=528.35 Aligned_cols=466 Identities=17% Similarity=0.114 Sum_probs=361.2
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC--Cc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI---PK--IT-SGILIGVYAGVSTASAVFVYFRSFFA 959 (1361)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~---~~--~~-~~~~l~iy~~l~~~~~i~~~~~~~~~ 959 (1361)
++.+++|+++.++.. ++.+++.++...+.+..++.+...++. +. .. ...++.+++++.++..++.+++.++.
T Consensus 10 ~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 10 TRWLKQQSKPAKRWL--NLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred hHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667776554432 233333344445555566666554432 11 11 11233445555667778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000671 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1361)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1361)
...+.+...+++.++++++++.|.+||++.++|++++|+++|++.++..+...+..++..++..++.++++++++|.+.+
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 167 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGL 167 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888888888888888889999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000671 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1361)
Q Consensus 1040 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1361)
+++..+++..++..++.+..++..+...+..+.+.+++.|+++|+++||+|++|+++.+++.+..++..+..........
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK11174 168 ILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAF 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666777777777777777788899999999999999999999999999999988887777666555555
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhhhhcCCccCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000671 1120 WLILRVEALQNLTLFTAAL-FLVLIPRGYVAPGLV---------GLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1361)
Q Consensus 1120 wl~~rl~~l~~l~~~~~~~-~~vl~~~g~is~g~~---------gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e 1189 (1361)
+......++..+..+++.+ ++... .|.++.|.+ .+++.++..+..|+..+...+.++.....|.+|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 248 LSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444433322222 22222 255555532 233356677889999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC
Q 000671 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP 1269 (1361)
Q Consensus 1190 ~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep 1269 (1361)
+++.|++.+. ++. .+...+..++|+|+||+|.|.++ ++||+|+||+|+|||++||||+||||||||+++|.|+| |
T Consensus 327 ~l~~~~~~~~--~~~-~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 327 FLETPLAHPQ--QGE-KELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHcCCCcccC--CCc-cccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 9987765321 111 11111235689999999988655 45999999999999999999999999999999999999 9
Q ss_pred CCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCch
Q 000671 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFN 1345 (1361)
Q Consensus 1270 ~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~ 1345 (1361)
++|+|++||+|+++++.+++|++|++|||||+||+|||||||...+ +++|||+++|++.|+-.. +---|+|+..++
T Consensus 402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge 481 (588)
T PRK11174 402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481 (588)
T ss_pred CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccccc
Confidence 9999999999999999999999999999999999999999997553 599999999999985321 222267888999
Q ss_pred hhhhhcccccccee
Q 000671 1346 KFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1346 ~~~~~~~~~~~~~~ 1359 (1361)
.|+++|.||||++.
T Consensus 482 ~G~~LSGGQrQRia 495 (588)
T PRK11174 482 QAAGLSVGQAQRLA 495 (588)
T ss_pred CCCCCCHHHHHHHH
Confidence 99999999999974
No 51
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2e-52 Score=539.78 Aligned_cols=468 Identities=18% Similarity=0.187 Sum_probs=372.2
Q ss_pred cHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCch---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKITS---GILIGVYAGVSTASAVFVYFRSFFA 959 (1361)
Q Consensus 885 ~~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~~---~~~l~iy~~l~~~~~i~~~~~~~~~ 959 (1361)
+++.++.|++..+... ...+++.++..++.++.++++...++. +.... ..+...++++.++..++.+++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 143 SLLKFIPLITRQKKLI--VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777776544332 233333444455666777777766653 11111 1122334445566777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000671 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1361)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1361)
...+.+...+++.++++++++.|++||+++++|++++|++ |.+.+...+...+...+..++.+++.++++++.+|++++
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999998 888888877766666666666777777788889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000671 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1361)
Q Consensus 1040 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1361)
+++..++++..+...+.+..++..+......+...+++.|+++|+.|||+||.|+++.+++.+..++..+..+.......
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777777888888888888899999999999999999999999999998888877776665555444
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000671 1120 WLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1361)
Q Consensus 1120 wl~~rl~~l~~l~~~~~-~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~ 1198 (1361)
+......++..+..+++ .+.+.++..|.+++|.+.++.+++..+..|+..+...+.+++....+++|+.++++.|+|.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 44433333333322222 22234556899999999999999999999999999999999999999999999999887753
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcC
Q 000671 1199 AIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1361)
Q Consensus 1199 ~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDG 1278 (1361)
.. ......++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+|||
T Consensus 460 ~~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 460 NK---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred cc---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 21 1112234567899999999999644 4699999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhhcCceecCcccccccchhhhcCCC--CCCCHHHHHHHHhhCcCC---CCCCcccccCCchhhhhhccc
Q 000671 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKVSQLTPNS---RNSRIDIDFPTFNKFCCRIIK 1353 (1361)
Q Consensus 1279 vDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~--~~~sDeeI~~AL~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 1353 (1361)
+|+++++.+++|++|++|||||+||+|||||||..+ .+++|||+++|++.++-. .+--.|+|+.-++.|.++|.|
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 999999999999999999999999999999999854 358999999999998532 233346788889999999999
Q ss_pred ccccee
Q 000671 1354 TKQLVT 1359 (1361)
Q Consensus 1354 ~~~~~~ 1359 (1361)
|||++.
T Consensus 616 QrQRia 621 (708)
T TIGR01193 616 QKQRIA 621 (708)
T ss_pred HHHHHH
Confidence 999974
No 52
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.1e-52 Score=537.42 Aligned_cols=472 Identities=17% Similarity=0.157 Sum_probs=379.4
Q ss_pred cHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCc-h--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKIT-S--GILIGVYAGVSTASAVFVYFRSFFA 959 (1361)
Q Consensus 885 ~~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~-~--~~~l~iy~~l~~~~~i~~~~~~~~~ 959 (1361)
.++.++.+++..++.. ...+++.++...+.++.++.+...++. +... . ..+...++++.++..++.+++.++.
T Consensus 141 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (710)
T TIGR03796 141 LLRALWRRLRGSRGAL--LYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYL 218 (710)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777776544322 222333334445555666666655442 1111 1 1223344555666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000671 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1361)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1361)
...+.+...+++.++++++++.|++||++.++|++++|++.| +.+...+...+..++..++.+++.++++++.+|++.+
T Consensus 219 ~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 297 (710)
T TIGR03796 219 RRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTL 297 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 6788888877777888888888888899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000671 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1361)
Q Consensus 1040 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1361)
+.+..++++.++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........
T Consensus 298 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (710)
T TIGR03796 298 IGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQ 377 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777777777777776777778889999999999999999999999999999888888777777776677
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000671 1120 WLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1361)
Q Consensus 1120 wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~ 1198 (1361)
|......++..+..+++.++ ++++..|.++.|.+.++++++..+..|+..+...+.+++....+.+|+.++++.|+|.+
T Consensus 378 ~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 457 (710)
T TIGR03796 378 ILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPL 457 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 76666666555444333333 34556899999999999999999999999999999999999999999999998877753
Q ss_pred CCCCC--C-CCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 000671 1199 AIVED--K-RPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275 (1361)
Q Consensus 1199 ~~~~~--~-~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~ 1275 (1361)
..... . .....++.+|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 458 LEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred cccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 21100 0 01111345789999999999987666799999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhc
Q 000671 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRI 1351 (1361)
Q Consensus 1276 IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~ 1351 (1361)
+||+|+++++.+++|++|++|||||+||+|||||||..++ +++|+|+++|++.++-.. +---|+|+.-++.|.|+|
T Consensus 538 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LS 617 (710)
T TIGR03796 538 FDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS 617 (710)
T ss_pred ECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCC
Confidence 9999999999999999999999999999999999998654 589999999999985321 233477888889999999
Q ss_pred ccccccee
Q 000671 1352 IKTKQLVT 1359 (1361)
Q Consensus 1352 ~~~~~~~~ 1359 (1361)
.||||++.
T Consensus 618 GGQrQRia 625 (710)
T TIGR03796 618 GGQRQRLE 625 (710)
T ss_pred HHHHHHHH
Confidence 99999974
No 53
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.6e-51 Score=528.34 Aligned_cols=467 Identities=20% Similarity=0.205 Sum_probs=371.1
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCch--h-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITS--G-ILIGVYAGVSTASAVFVYFRSFFAA 960 (1361)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~--~-~~l~iy~~l~~~~~i~~~~~~~~~~ 960 (1361)
++.++.+++..++.. ...+++.++...+.++.++.+...++.. .... . .+..+++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPLY--RDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666444322 2223333344455566677666655421 1111 1 1222344445567788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000671 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1361)
Q Consensus 961 ~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv 1040 (1361)
+.+.+...+++.++++|+++.|++| ++.++|++++|+ +|++.+...+...+...+..++.+++.++++++++|+++++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 788999999999 79999999888777777777777777778888899998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000671 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1361)
Q Consensus 1041 ~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1361)
.+..++++..+..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..+.....+.+
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666667777777777777778888999999999999999999999999999999998887777776666666
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000671 1121 LILRVEALQNLTLFTAAL-FLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1361)
Q Consensus 1121 l~~rl~~l~~l~~~~~~~-~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~ 1199 (1361)
.....+++..+..+++.+ .+.++..|.+++|.+.++++|...+..|+..+...+.+++...++.+|+.++++.|+|.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 555555554443332222 2344568899999999999999999999999999999999999999999999998776432
Q ss_pred CCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCe
Q 000671 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1361)
Q Consensus 1200 ~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGv 1279 (1361)
. .......+.+|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|.+||+
T Consensus 451 ~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 451 G---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred C---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 1111112356899999999999765567999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCC---CCCCcccccCCchhhhhhccccc
Q 000671 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNS---RNSRIDIDFPTFNKFCCRIIKTK 1355 (1361)
Q Consensus 1280 DI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 1355 (1361)
|+++++++++|+++++|||||++|+|||||||...+ +++|||+++|++.++-. ..---|+|+.-++.|.|+|.|||
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr 607 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence 999999999999999999999999999999998655 38999999999998521 12233677888899999999999
Q ss_pred ccee
Q 000671 1356 QLVT 1359 (1361)
Q Consensus 1356 ~~~~ 1359 (1361)
|++.
T Consensus 608 QRla 611 (694)
T TIGR03375 608 QAVA 611 (694)
T ss_pred HHHH
Confidence 9874
No 54
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.7e-51 Score=518.41 Aligned_cols=447 Identities=20% Similarity=0.270 Sum_probs=353.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CCc--hhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 906 VLAQSGFVGLQAAATYWLAYAIQIP--KIT--SGIL---IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSI 978 (1361)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~--~~~--~~~~---l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~i 978 (1361)
+++.++...+.+..+++++..++.. ... .... +.+++++.++..++.+++.+.....+.+...+++.++++++
T Consensus 29 ~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 108 (592)
T PRK10790 29 VLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAA 108 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666677776665421 111 1111 22244444566677888888999999999999999999999
Q ss_pred hcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 979 FKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIAT 1058 (1361)
Q Consensus 979 l~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~ 1058 (1361)
+++|.+||++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|.+.++.+..+++...+...+.+.
T Consensus 109 ~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~ 188 (592)
T PRK10790 109 LRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY 188 (592)
T ss_pred HcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888888888999988766554444444444445555
Q ss_pred HHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000671 1059 ARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL-ILRVEALQNLTLFTAA 1137 (1361)
Q Consensus 1059 sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~rl~~l~~l~~~~~~ 1137 (1361)
.+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......+. .....++..+..+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (592)
T PRK10790 189 STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLL 268 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556556667788999999999999999999999999999988877666655544443332 2223333332222221
Q ss_pred HHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEE
Q 000671 1138 LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIE 1217 (1361)
Q Consensus 1138 ~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~ 1217 (1361)
+.......|.++.|.+.+++.|+..+..|+..+...+.++++...+.+|+.++++.+++++. .. ..++.+|+|+
T Consensus 269 ~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i~ 342 (592)
T PRK10790 269 MLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQSGRID 342 (592)
T ss_pred HHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeEE
Confidence 11112357889999999999999999999999999999999999999999999986654321 11 1234467899
Q ss_pred EEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceec
Q 000671 1218 LRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIP 1297 (1361)
Q Consensus 1218 f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIp 1297 (1361)
|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+||++++.+++|++|++||
T Consensus 343 ~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~ 421 (592)
T PRK10790 343 IDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421 (592)
T ss_pred EEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEc
Confidence 99999999754 45999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1298 QEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1298 Qdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|||+||+||||+||..++.++|+|+++|++.++-.. .---|+|+.-++.|.++|.||||++.
T Consensus 422 Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 422 QDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred cCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 999999999999999888889999999999986332 12236788888999999999999974
No 55
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.9e-51 Score=512.22 Aligned_cols=414 Identities=17% Similarity=0.138 Sum_probs=345.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHH
Q 000671 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1361)
Q Consensus 941 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~ 1020 (1361)
+.++.++..++.++..++.+..+.+...++|.++++++++.|++||++.++|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667788888889999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHH
Q 000671 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVR-FVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1361)
Q Consensus 1021 ~~~i~~i~v~~~~~~~l~lv~ip~~~~~~-~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~ 1099 (1361)
+.+++.++++++.+|++.++++..+++.. .+..++.+..++..+..++..+.+.+.+.|+++|+++||+|+.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 88999999999999999877654444333 34455666667777777788889999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000671 1100 YLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFT-LTGTQVFLSRWYCYLA 1178 (1361)
Q Consensus 1100 ~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~vl~~~g~is~g~~gl~l~ya~~-l~~~l~~l~~~~~~le 1178 (1361)
+.+..++..+..........+.....+++..+..+++.+++.....|.++.|.+..++.|+.. ...++..+...+.+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~ 305 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLG 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888777777766666666665554433333322223688889988887777644 4467777888899999
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHH
Q 000671 1179 NYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1361)
Q Consensus 1179 ~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKST 1258 (1361)
+...|.+|+.++++.++|.+.. ...++ .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+|||||||
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKST 381 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKST 381 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHH
Confidence 9999999999999877653211 11111 1346789999999999765456999999999999999999999999999
Q ss_pred HHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCC---CC
Q 000671 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNS---RN 1334 (1361)
Q Consensus 1259 L~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~---~~ 1334 (1361)
|+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||+||+|||||||.... +.+|||+++|++.++-. ..
T Consensus 382 L~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~ 461 (574)
T PRK11160 382 LLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED 461 (574)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence 999999999999999999999999999999999999999999999999999997433 58999999999998632 23
Q ss_pred CCcccccCCchhhhhhcccccccee
Q 000671 1335 SRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1335 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
--|+|+.-++.|+++|.||||++.
T Consensus 462 -p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 462 -DKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred -ccccCchhcCCCCCCCHHHHHHHH
Confidence 557899999999999999999974
No 56
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.3e-50 Score=507.02 Aligned_cols=447 Identities=16% Similarity=0.122 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CCc-h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000671 908 AQSGFVGLQAAATYWLAYAIQIP---KIT-S--GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKA 981 (1361)
Q Consensus 908 ~~~~~~~~~~~~~~wl~~~~~~~---~~~-~--~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~a 981 (1361)
+.++..++.+..++.++..++.. ... . ..+++.+++++++..++.+++.++....+.+...+++.++++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~ 90 (529)
T TIGR02857 11 LGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAAL 90 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344445555666655554421 111 1 12344555666777888889999999999999999999999999999
Q ss_pred CCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 982 PMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARE 1061 (1361)
Q Consensus 982 p~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~ 1061 (1361)
|.+||++.++|++++|+++|++.++..+...+..++..++.+++.+++++..+|.+.++++..+++..++..++.+..++
T Consensus 91 ~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~ 170 (529)
T TIGR02857 91 GPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQA 170 (529)
T ss_pred CchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888888888888888888899988776665555544444555555555
Q ss_pred HHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Q 000671 1062 LIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFL 1140 (1361)
Q Consensus 1062 l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~-~~~~ 1140 (1361)
..+......+...+++.|+++|+++||+|+.|+++.+++.+..++..+..........+.....+++..+..+++ .+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (529)
T TIGR02857 171 AARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIG 250 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666778899999999999999999999999999999888877776666666666666565555443332 2233
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEE
Q 000671 1141 VLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQ 1220 (1361)
Q Consensus 1141 vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~n 1220 (1361)
+.+..|.++.|.+.+++.|+..+..|+..+...+..++....+.+|+.++++.+++... .. +...+..|.|+|+|
T Consensus 251 ~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~--~~~~~~~~~i~~~~ 325 (529)
T TIGR02857 251 FRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA--PVTAAPAPSLEFSG 325 (529)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc--CCCCCCCCeEEEEE
Confidence 34447899999999999999999999999999999999999999999999985543211 11 11123347899999
Q ss_pred EEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcc
Q 000671 1221 LKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300 (1361)
Q Consensus 1221 Vs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp 1300 (1361)
|+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||||
T Consensus 326 v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~ 405 (529)
T TIGR02857 326 LSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHP 405 (529)
T ss_pred EEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCC
Confidence 99999765556999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1301 TLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1301 ~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++|+|||||||.... +++|+|+++|++.++-.. +-.-|+|+..++.|.++|.||||++.
T Consensus 406 ~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 406 FLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred cccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 999999999997543 579999999999986322 22236789999999999999999974
No 57
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.9e-50 Score=507.05 Aligned_cols=449 Identities=17% Similarity=0.248 Sum_probs=378.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CC-c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000671 906 VLAQSGFVGLQAAATYWLAYAIQIP--KI-T--SGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFK 980 (1361)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~--~~-~--~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ 980 (1361)
+++.++..++.+..+++++..++.. .. . ...+.++++++.++..++.+++.++....+.+....++..+++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~ 99 (571)
T TIGR02203 20 GVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLG 99 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444455555666665544321 11 1 11223456667777788889999999999999999999999999999
Q ss_pred CCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 981 APMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAR 1060 (1361)
Q Consensus 981 ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr 1060 (1361)
.|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|++.++.+.+.++..++..++.+..+
T Consensus 100 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~ 179 (571)
T TIGR02203 100 LPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLR 179 (571)
T ss_pred CCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888888888888888888888
Q ss_pred HHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000671 1061 ELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF- 1139 (1361)
Q Consensus 1061 ~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~- 1139 (1361)
+..+......++..+++.|+++|+.+||+++.++++.+++.+..+...+..........+.....+++..+...++.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 259 (571)
T TIGR02203 180 RISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIA 259 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999999999999999999888887777777777766666555443333333
Q ss_pred hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEE
Q 000671 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219 (1361)
Q Consensus 1140 ~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~ 1219 (1361)
+..+..|.+++|.+..+++|+..+..|+..+...+..++....+.+|+.++++.++|.+. +..+.. +..|+|+|+
T Consensus 260 ~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~--~~~~~i~~~ 334 (571)
T TIGR02203 260 LFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAIE--RARGDVEFR 334 (571)
T ss_pred HHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCC--CCCCeEEEE
Confidence 345568999999999999999999999999999999999999999999999987666432 111111 245789999
Q ss_pred EEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCc
Q 000671 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299 (1361)
Q Consensus 1220 nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQd 1299 (1361)
||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+++|++|+|++||+|+++++.+++|+++++||||
T Consensus 335 ~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 414 (571)
T TIGR02203 335 NVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQD 414 (571)
T ss_pred EEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccC
Confidence 99999976555799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCC--CCCHHHHHHHHhhCcCC---CCCCcccccCCchhhhhhcccccccee
Q 000671 1300 PTLFRGSVRTNLDPLG--LYSDDEIWKVSQLTPNS---RNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1300 p~LF~GTIR~NLdP~~--~~sDeeI~~AL~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|++|+||||+||.-++ +++|+|+++|++.++-. .+-.-|+|+.-++.|.++|.||||++.
T Consensus 415 ~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 415 VVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred cccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 9999999999997553 68999999999998633 233346888889999999999999864
No 58
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.4e-50 Score=516.49 Aligned_cols=468 Identities=19% Similarity=0.245 Sum_probs=372.0
Q ss_pred cHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCc--h-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KIT--S-GILIGVYAGVSTASAVFVYFRSFFA 959 (1361)
Q Consensus 885 ~~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~--~-~~~l~iy~~l~~~~~i~~~~~~~~~ 959 (1361)
+++.++.+++..++.. ...+++.++...+.++.++.+...++.- ... . ..+...++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~~--~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQF--REVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666443322 2223333344445556666666555421 111 1 1223344555666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000671 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1361)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1361)
...+.+...+++.+++++++++|++||++.++|++++|+ +|++.+.+.+...+..++..++.+++.++++++.+|++++
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999988777766666666666667788899999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000671 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1361)
Q Consensus 1040 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1361)
+++..++++..+..+..+..++..+...+..+...+++.|+++|+.+||+||.|+++.+++.+..++..+..+.......
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666655555555555555555556667888999999999999999999999999999999988888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000671 1120 WLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1361)
Q Consensus 1120 wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~ 1198 (1361)
+.....+++..+..+++.++ +.++..|.++.|.+.++.+++..+..|+..+...+.+++....+.+|+.++++.|+|.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 77766666655544433333 34556899999999999999999999999999999999999999999999998877643
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcC
Q 000671 1199 AIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1361)
Q Consensus 1199 ~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDG 1278 (1361)
.. +..+ ..+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+|||
T Consensus 443 ~~--~~~~--~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAA--LPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCC--CCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21 1111 1123588999999999987666799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCC---CCCCcccccCCchhhhhhcccc
Q 000671 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNS---RNSRIDIDFPTFNKFCCRIIKT 1354 (1361)
Q Consensus 1279 vDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 1354 (1361)
+|+++++.+++|+++++|||||++|+|||||||...+ +++|+++++|++.++-. .+---|+|+..++.|.++|.||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 9999999999999999999999999999999997543 58999999999998632 1223367888899999999999
Q ss_pred cccee
Q 000671 1355 KQLVT 1359 (1361)
Q Consensus 1355 ~~~~~ 1359 (1361)
||++.
T Consensus 599 ~qri~ 603 (694)
T TIGR01846 599 RQRIA 603 (694)
T ss_pred HHHHH
Confidence 99974
No 59
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4.9e-50 Score=507.71 Aligned_cols=414 Identities=17% Similarity=0.232 Sum_probs=353.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHH
Q 000671 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1361)
Q Consensus 941 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~ 1020 (1361)
++++.++..++.+++.++....+.+....++..+++++++.|.++|++...|++++|+++|++.+...+...+..++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777788888888899999999999999999999999999999999999999999999999888888888899
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHH
Q 000671 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY 1100 (1361)
Q Consensus 1021 ~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~ 1100 (1361)
+.+++.++++++.+|.++++++..++++.++..+..+..++..+......+...+++.|.++|+.+||+|+.++++.+++
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHH
Confidence 99999999999999998887776666666666666666677766667778889999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1101 LKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1361)
Q Consensus 1101 ~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~ 1179 (1361)
.+..+...+..........|.....+++..+...++.++ +..+..|.+++|.+.+++++..++..|+..+...+..+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T PRK11176 231 DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887777777777776666655544333332 3445678999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHH
Q 000671 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1361)
Q Consensus 1180 ~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL 1259 (1361)
...+.+|+.++++.++|.+. +.. ...|..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||
T Consensus 311 ~~~~~~ri~~~~~~~~~~~~---~~~--~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTL 385 (582)
T PRK11176 311 GMAACQTLFAILDLEQEKDE---GKR--VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385 (582)
T ss_pred HHHHHHHHHHHhcCCCcCCC---CCc--CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHH
Confidence 99999999999987665321 111 1124457899999999997665679999999999999999999999999999
Q ss_pred HHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCC--CCCCHHHHHHHHhhCcCC---CC
Q 000671 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKVSQLTPNS---RN 1334 (1361)
Q Consensus 1260 ~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~--~~~sDeeI~~AL~~~~~~---~~ 1334 (1361)
+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||++|+||||+||.-. +.++|+|+++|++.++-. .+
T Consensus 386 l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~ 465 (582)
T PRK11176 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK 465 (582)
T ss_pred HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999732 348999999999998522 22
Q ss_pred CCcccccCCchhhhhhcccccccee
Q 000671 1335 SRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1335 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
---|+|+..++.|.++|.||||++.
T Consensus 466 lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 466 MDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred cccccCceeCCCCCcCCHHHHHHHH
Confidence 2336788888999999999999864
No 60
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=5.9e-49 Score=499.21 Aligned_cols=504 Identities=16% Similarity=0.148 Sum_probs=362.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 278 ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQE-GLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1361)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~ 355 (1361)
.++...++.++.+.+....|.+...+++.+.+.+. .... .+.+++++++. ++......|...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~----~~~~~~~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPA----SFINSAIKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888999999999999886543321 1111 11122222222 333333334466677778888888
Q ss_pred HHHHHHhcCCcc----cCCCCCHHHHHHHHHhHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000671 356 AVYQKQLKLSSL----GRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPG-LVLFLI 429 (1361)
Q Consensus 356 ~Iy~K~L~ls~~----~~~~~~~G~ivNlms~D~~ri~~~~-~~~~~~w~~plqi~va~~~L~~~lG~~~l~g-l~v~~l 429 (1361)
.++++.++-... ..++ .+|++.+.++.|++.+.+.. ..+..+...++.++.+++.|+..++|....+ ++.+.+
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777663211 1122 57999999999999998754 3455666777788878888887677654332 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1361)
.+.+...+.+.+.+..++..+..++-....+|.++|+++||+|+-|+...++.++.-++-.+..++.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34445556777788888888889999999999999999999999998877766554444333333332222221111111
Q ss_pred HH----HHHHHHHHHHHHHhCC----CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000671 510 SP----TIISSVIFLGCALTGS----APLNASTIFTV----LATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1361)
Q Consensus 510 ~p----~~v~~~~f~~~~l~~~----~~Lt~~~~Ft~----l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 577 (1361)
.. ..+..+..+..++... +.+|.+..+.. ..++..+..|+..+...+..+.++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111111112122221 46787754432 334667789999999999999999999999999996422
Q ss_pred C-CC-----chhhh-----------------ccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCC
Q 000671 578 L-NN-----DDVRR-----------------ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1361)
Q Consensus 578 ~-~~-----~~~~~-----------------~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~Gs 634 (1361)
. +. ..... .......+.|+++|++|+|+++ +++|+|+||++++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCC
Confidence 1 10 00000 0001123469999999999743 3699999999999999999999999
Q ss_pred CHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCCCCHHHHhhcCC--------CCCHHHHHHHHHHhcchHHHhc
Q 000671 635 GKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKDINN 704 (1361)
Q Consensus 635 GKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~~ti~eni~~g~--------~~~~~~~~~~~~~~~l~~dl~~ 704 (1361)
|||||+++|+|+++|++|+|.+++ +++|+||+|+++++|++|||.++. ..++++..++++.+++.+.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999998864 699999999999999999999874 2456678899999999888877
Q ss_pred CCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh
Q 000671 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1361)
Q Consensus 705 l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~ 784 (1361)
|.|.+|..+ .+.+||||||||++||||++++|++++||||||+||+++++.+.+.+.+ .|+|+|++||+++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHh
Confidence 889889876 5789999999999999999999999999999999999999998775533 38999999999999999
Q ss_pred cCeEEEEeC
Q 000671 785 VDRILVLEG 793 (1361)
Q Consensus 785 ~d~i~~l~~ 793 (1361)
||++++|++
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999973
No 61
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=6.2e-49 Score=497.30 Aligned_cols=469 Identities=20% Similarity=0.232 Sum_probs=369.3
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KIT---SGILIGVYAGVSTASAVFVYFRSFFAAH 961 (1361)
Q Consensus 887 ~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~---~~~~l~iy~~l~~~~~i~~~~~~~~~~~ 961 (1361)
+.+++|++..+... .+.+++.++...+.+..++.+....+.. ... ....+.+++++.++..++.+++.++...
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 7 AALWPFVRPYRGRV--LAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665433222 2233333444455556666665554421 111 1122334445555566677788888899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000671 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVA 1041 (1361)
Q Consensus 962 ~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ 1041 (1361)
.+.+....++..+++++++.|.++|+....|++++|+++|++.++..+...+..++..++.+++.+++++..+|++.+++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888888888999999987776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000671 1042 IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL 1121 (1361)
Q Consensus 1042 ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1361)
+..+++...+..++.+..+...+.....+....+++.|+++|+++||+|+.++++.+++.+..+...+..........|+
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66556555566666677777777777888889999999999999999999999999999999988777766666666666
Q ss_pred HHHHHHHHHHHHHHHH-HHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCC
Q 000671 1122 ILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAI 1200 (1361)
Q Consensus 1122 ~~rl~~l~~l~~~~~~-~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~ 1200 (1361)
......+..+..++.. +.+..+..|.+++|.+..+..|+..+..|+..+...+.++.+...+.+|+.++++.++|.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 5554444333222222 223445678999999999999999999999999999999999999999999999876553211
Q ss_pred CCCCCCCCCCCCcceEEEEEEEEEeCCCC-CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCe
Q 000671 1201 VEDKRPPSSWPFKGRIELRQLKIRYRPNA-PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1361)
Q Consensus 1201 ~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~-~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGv 1279 (1361)
. ...+..+|..+.|+|+||+|+|+++. +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+
T Consensus 325 ~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 325 A--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred C--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 1 11112234567899999999997532 56999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhccccc
Q 000671 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTK 1355 (1361)
Q Consensus 1280 DI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 1355 (1361)
||++++.+++|++++++||||++|+|||||||...+ +.+|+++|++|+.++-.. .---|+|++-++.|+++|.|||
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 999999999999999999999999999999998543 478999999999986432 1123678888889999999999
Q ss_pred ccee
Q 000671 1356 QLVT 1359 (1361)
Q Consensus 1356 ~~~~ 1359 (1361)
|++.
T Consensus 483 Qrl~ 486 (576)
T TIGR02204 483 QRIA 486 (576)
T ss_pred HHHH
Confidence 9874
No 62
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-48 Score=499.80 Aligned_cols=464 Identities=19% Similarity=0.247 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1361)
Q Consensus 344 ~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~ 422 (1361)
..|++.-..|-..++++.++-+-.--+...+|+|.|..|.|++.+++... .+.......++++..+.+.-...-+..++
T Consensus 884 ~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~ 963 (1381)
T KOG0054|consen 884 KGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIA 963 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 34455555555666666666555444567899999999999999987544 33343344444443333332222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 423 GLVLFLICGLLNVPFAKILQKCQSEFM----IAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQL 498 (1361)
Q Consensus 423 gl~v~~l~~~l~~~~~~~~~~~q~~~m----~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~ 498 (1361)
.+++.+++. .+.++..+..++.. ..+.-=.+..+|.++|+-+|+.|+.|+.|.++-...-+.-.+.. .+
T Consensus 964 ~~pl~v~~~----~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~---f~ 1036 (1381)
T KOG0054|consen 964 IIPLGVIYY----FVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAF---FL 1036 (1381)
T ss_pred HHHHHHHHH----HHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHH---HH
Confidence 333333332 23333333333332 22344456789999999999999999999887665544432211 11
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000671 499 RKAYGTV----IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLL 574 (1361)
Q Consensus 499 ~~~~~~~----~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~ 574 (1361)
..+.+-. +-..+-.++..+++.. .+..++..+++.+=-+++.--.+..-+..+-.....+-.-.+|.+|+.+|.+
T Consensus 1037 ~~~a~RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~ 1115 (1381)
T KOG0054|consen 1037 SISANRWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTD 1115 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhc
Confidence 1111111 1011112222222221 2222222778887777777666666666666666677777899999999998
Q ss_pred ccCCCCchhhhc-cc--cCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCC
Q 000671 575 DHELNNDDVRRI-SL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651 (1361)
Q Consensus 575 ~~e~~~~~~~~~-~~--~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~ 651 (1361)
.++..+...+.. ++ -++++.|+|+|.+..|.++. +++|+||||+|++||+++|||++|||||||.++|.++.+|.+
T Consensus 1116 ~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~l-p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~ 1194 (1381)
T KOG0054|consen 1116 IPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNL-PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE 1194 (1381)
T ss_pred CCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCC-cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC
Confidence 443222222111 22 24678999999999998873 589999999999999999999999999999999999999999
Q ss_pred cEEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCC
Q 000671 652 GTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1361)
Q Consensus 652 G~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 718 (1361)
|+|.+|| +++.+||+|.+|+||+|.|+---.++.+++..+++|.|+|.+.++.+|+|-+++|.|+|.
T Consensus 1195 G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~ 1274 (1381)
T KOG0054|consen 1195 GEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGE 1274 (1381)
T ss_pred CeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCc
Confidence 9999998 599999999999999999999878899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEE
Q 000671 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1361)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1361)
|+|=||||-+|||||++++++|++|||+|+++|++|-..| ++.++...+++|||.+.|+++.+.++|||+|||+|+|+|
T Consensus 1275 N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lI-Q~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1275 NFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI-QKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred cCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHH-HHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence 9999999999999999999999999999999999998765 677888889999999999999999999999999999999
Q ss_pred ecChHHHHhcC-chHHHHHH
Q 000671 799 SGNYQELLLAG-TAFEQLVN 817 (1361)
Q Consensus 799 ~g~~~~l~~~~-~~~~~~~~ 817 (1361)
.|+|++|++++ ..|.+++.
T Consensus 1354 fdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1354 FDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred cCChHHHHhCCcchHHHHHH
Confidence 99999999774 45655544
No 63
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-49 Score=444.66 Aligned_cols=411 Identities=23% Similarity=0.321 Sum_probs=319.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHH
Q 000671 400 SLALQLFLAIGVLFGVVGLGALPGLVLFLICGLL-NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF 478 (1361)
Q Consensus 400 ~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l-~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f 478 (1361)
...+++.+..+++|+..||...+..++++++..+ .......-..++++..++..+.-....+.|-+-.++|.|+=|+.+
T Consensus 65 P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e 144 (497)
T COG5265 65 PTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYE 144 (497)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhh
Confidence 3457899999999999998655544444444332 222222223334443344344455678899999999999999887
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 479 KSLIESRREK----EFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPE 554 (1361)
Q Consensus 479 ~~~i~~~R~~----El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~ 554 (1361)
.++-.+..+. ++|......++......++... +... ......-+..+.+|.+...-.-++...+..|+..+..
T Consensus 145 ~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~--l~~~-m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~ 221 (497)
T COG5265 145 AVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTG--LRVM-MTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGF 221 (497)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHH-HhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHH
Confidence 6665544433 3222111111111111111111 0011 1111112234789999988888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCchhhhcccc-CCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCC
Q 000671 555 ALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ-KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVG 633 (1361)
Q Consensus 555 ~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~-~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~G 633 (1361)
....+-|+++..++..+.+..+-...+..+-.+.. ...+.|.|+|++|.|+++ +++|+++||++++|+.++|+|++|
T Consensus 222 ~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG 299 (497)
T COG5265 222 SYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESG 299 (497)
T ss_pred HHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCC
Confidence 99999999999999988775432111111111111 345679999999999875 589999999999999999999999
Q ss_pred CCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcch
Q 000671 634 AGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALD 699 (1361)
Q Consensus 634 sGKSTLl~~llg~~~~~~G~v~~~g~-------------iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~ 699 (1361)
+||||+++.|.+++++++|.|.++|+ ||.|||+..+||.|+..||.+|++ ..+++...+.++.++.
T Consensus 300 ~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~ 379 (497)
T COG5265 300 AGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIH 379 (497)
T ss_pred CcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhh
Confidence 99999999999999999999999983 999999999999999999999988 4577888999999999
Q ss_pred HHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 000671 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1361)
Q Consensus 700 ~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 779 (1361)
+.++.+|+|.+|.|||+|-.|||||||||++||+++.+|+|++|||.|||||.|+++.|-. .++...+|+|.+++.|++
T Consensus 380 ~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~-~l~~~~~~rttlviahrl 458 (497)
T COG5265 380 DFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA-ALREVSAGRTTLVIAHRL 458 (497)
T ss_pred HHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH-HHHHHhCCCeEEEEeehh
Confidence 9999999999999999999999999999999999999999999999999999999999754 456667899999999999
Q ss_pred hHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHH
Q 000671 780 EFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1361)
Q Consensus 780 ~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 816 (1361)
+.+-.||.|+||+||+|+|.|+|++|++.++.|+++.
T Consensus 459 sti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw 495 (497)
T COG5265 459 STIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMW 495 (497)
T ss_pred hhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHh
Confidence 9999999999999999999999999999999988775
No 64
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7e-48 Score=485.61 Aligned_cols=465 Identities=17% Similarity=0.180 Sum_probs=358.1
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 888 PFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKI--TSGILIGVYAGVSTASAVFVYFRSFFAAHLGLK 965 (1361)
Q Consensus 888 ~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~~--~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~ 965 (1361)
.+++|++..+.. +.+.+++.++..++.++.++.++..++.... ....++.+++++.++..+..++..........+
T Consensus 9 ~l~~~l~~~k~~--~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (585)
T TIGR01192 9 RALSYLNVHKNR--VLLIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHG 86 (585)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566544332 2333344444555666667766665542111 111122222233333444444555555566666
Q ss_pred HHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000671 966 ASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAM 1045 (1361)
Q Consensus 966 ~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~ 1045 (1361)
...+++.+++++++++|++||+++++|++++|+++|++.+...+...+..++..++.+++.+++++..+|.++++++.++
T Consensus 87 ~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 166 (585)
T TIGR01192 87 RRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLG 166 (585)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777789999999999999999999999999999999999888877777777777788888888899999988888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000671 1046 VAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRV 1125 (1361)
Q Consensus 1046 ~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl 1125 (1361)
+++.++.+.+.+..++..+......+...+++.|+++|+++||+|+.++++.+++.+..++..+..+.......+.....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888888888888999999999999999999999999999999888877666555444444443333
Q ss_pred HHHHHHHHHHHH-HHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCC
Q 000671 1126 EALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDK 1204 (1361)
Q Consensus 1126 ~~l~~l~~~~~~-~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~ 1204 (1361)
.++..+..+++. +.++++..|.+++|.+.+++.|+..+..++..+...+.++.....+.+|+.++.+.+++.+. ..
T Consensus 247 ~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~ 323 (585)
T TIGR01192 247 RMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PA 323 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---Cc
Confidence 333333322222 22344568899999999999999999999999999999999999999999999876554321 11
Q ss_pred CCCCCC-CCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCC
Q 000671 1205 RPPSSW-PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS 1283 (1361)
Q Consensus 1205 ~~~~~w-p~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~ 1283 (1361)
.++ .+ +.+|.|+|+||+|+|+++. ++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|++||+|+++
T Consensus 324 ~~~-~~~~~~~~i~~~~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 401 (585)
T TIGR01192 324 DAP-ELPNVKGAVEFRHITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401 (585)
T ss_pred cCC-CCCCCCCeEEEEEEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence 111 12 2357899999999997543 59999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1284 MGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1284 i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++.+++|+++++|||||.+|+|||||||.... +.+|+|+++|++.++-.. .---|+|+..+++|.++|.||||++.
T Consensus 402 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~ 481 (585)
T TIGR01192 402 VTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLA 481 (585)
T ss_pred CCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999997542 578999999999875332 11226788888999999999999974
No 65
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.4e-48 Score=487.72 Aligned_cols=417 Identities=17% Similarity=0.215 Sum_probs=339.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHH
Q 000671 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1361)
Q Consensus 938 l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~ 1017 (1361)
+++++++.++..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.++......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444555566677778888888899999999999999999999999999999999999999999999977777777777
Q ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHH
Q 000671 1018 ASGTELLAIIGIM-TFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1361)
Q Consensus 1018 ~~~~~~i~~i~v~-~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f 1096 (1361)
..++..++.++++ ++.+|.+.++.+..+++..++.+.+.+..++..+..+...+.+.+++.|+++|+++||+|+.|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 6665555555555 478898877776666666666676766666666666777788999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1361)
Q Consensus 1097 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~-~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~ 1175 (1361)
.+++.+..++..+..+.......+.......+..+..+++ .+.++++..|.+++|.+..++.|+..+..|+..+...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 278 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFN 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777766655555544443333333222222 222344568999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCc
Q 000671 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1361)
Q Consensus 1176 ~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSG 1255 (1361)
+++...++.+|+.++++.++|.+. .....+ +.+|+|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 279 ~~~~~~~a~~ri~~ll~~~~~~~~--~~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsG 353 (569)
T PRK10789 279 IVERGSAAYSRIRAMLAEAPVVKD--GSEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSG 353 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccC--CCCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCC
Confidence 999999999999999987655321 111111 235789999999999765556999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCcCCC-
Q 000671 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTPNSR- 1333 (1361)
Q Consensus 1256 KSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~~~~- 1333 (1361)
||||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||||+||+||||+||... .+++|+++++|++.++-..
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999754 3589999999999985321
Q ss_pred --CCCcccccCCchhhhhhcccccccee
Q 000671 1334 --NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1334 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+---|+|+..+++|.++|.||||++.
T Consensus 434 i~~lp~gl~t~~~~~g~~LSgGq~qRi~ 461 (569)
T PRK10789 434 ILRLPQGYDTEVGERGVMLSGGQKQRIS 461 (569)
T ss_pred HHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 11236788889999999999999974
No 66
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.1e-47 Score=485.95 Aligned_cols=452 Identities=16% Similarity=0.172 Sum_probs=351.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000671 904 LGVLAQSGFVGLQAAATYWLAYAIQIPKI--TSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKA 981 (1361)
Q Consensus 904 l~~~~~~~~~~~~~~~~~wl~~~~~~~~~--~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~a 981 (1361)
+++++.++..++.+..++++...++.... ....++.+++++.++..+..++......+...+....+..++++++++.
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 23 LLAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444445555666667777666543211 1111223333333444444444444445555566666777999999999
Q ss_pred CCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 982 PMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARE 1061 (1361)
Q Consensus 982 p~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~ 1061 (1361)
|.++|++.+.|++++|+++|++.+...+...+..++..++..++.++++++.+|++.++.+.+++++..+..++.+..++
T Consensus 103 ~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~ 182 (588)
T PRK13657 103 PLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKD 182 (588)
T ss_pred CHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988777777777777777777777888899998887777777777777888888888
Q ss_pred HHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 000671 1062 LIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL-FL 1140 (1361)
Q Consensus 1062 l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~-~~ 1140 (1361)
..+......+...+++.|+++|+++||+|+.++++.+++.+..+...+..........+.....+++..+..+++.+ .+
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999888877776655555555554444443333333222 23
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEE
Q 000671 1141 VLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQ 1220 (1361)
Q Consensus 1141 vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~n 1220 (1361)
..+..|.+++|.+..++.|+..+..++..+...+.++..+..+.+|+.++.+.+++.+.. ++..++. +.+|.|+|+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~~--~~~~~I~~~~ 339 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PGAIDLG--RVKGAVEFDD 339 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCCCCcC--CCCCeEEEEE
Confidence 445689999999999999999999999999999999999999999999998765443211 1111111 2357899999
Q ss_pred EEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcc
Q 000671 1221 LKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300 (1361)
Q Consensus 1221 Vs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp 1300 (1361)
|+|+|+++ +++|+|+||+++|||+|||||+||||||||+++|.|+|+|++|+|+|||+|+++++.+++|++|++|||||
T Consensus 340 vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 418 (588)
T PRK13657 340 VSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA 418 (588)
T ss_pred EEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc
Confidence 99999643 45999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1301 TLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1301 ~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
.||+||||+||.-+. +.+|+|+|+|++.++-.. .---|+|+..++.|.++|.||||++.
T Consensus 419 ~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia 481 (588)
T PRK13657 419 GLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA 481 (588)
T ss_pred ccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH
Confidence 999999999997442 578999999999986321 11225788888899999999999974
No 67
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-49 Score=446.97 Aligned_cols=412 Identities=18% Similarity=0.270 Sum_probs=324.8
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHH
Q 000671 938 IGVYAGVSTA------SAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPF 1011 (1361)
Q Consensus 938 l~iy~~l~~~------~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~ 1011 (1361)
+..|..+.++ ++++.-+|+++...+...+.+.+-.++|+|+....++|+-...+|+++.-+.+..+.+. .+..
T Consensus 256 ~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~y 334 (790)
T KOG0056|consen 256 VFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEY 334 (790)
T ss_pred HHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHH
Confidence 4445555443 35667778888888888899999999999999999999999999998888877777766 4455
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhc
Q 000671 1012 SIVFVAASGTELLAIIGIMT-FVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAF 1090 (1361)
Q Consensus 1012 ~l~~~~~~~~~~i~~i~v~~-~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf 1090 (1361)
.+.++...++.+.++++..+ ..+|++.++++..+.+|.++......--.+.+|....+-..-.+.-.+++-+-.|++-|
T Consensus 335 vVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy 414 (790)
T KOG0056|consen 335 VVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYY 414 (790)
T ss_pred HHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhcc
Confidence 55555555555555544433 46889988888777777664322211112222222222222334567889999999999
Q ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHH
Q 000671 1091 NMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVF 1169 (1361)
Q Consensus 1091 ~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~ 1169 (1361)
++|+...++|.+.++.+++.-++....-..+...-+.+..+..+...++ ++.+..+.++.|...++.+|.+++..|++|
T Consensus 415 ~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~ 494 (790)
T KOG0056|consen 415 NAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNF 494 (790)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHH
Confidence 9999999999999999999888777766666655444444443333333 345567889999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEE
Q 000671 1170 LSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249 (1361)
Q Consensus 1170 l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIV 1249 (1361)
+...+..+|++.+-.||+++.++.++|..+ .+..|| ---.+|.|+|+||+|.|+|+.| ||+||||+++||+.||+|
T Consensus 495 FGT~YR~iQ~nfiDmEnmfdllkee~eVvd--~P~a~p-l~~~~G~i~fsnvtF~Y~p~k~-vl~disF~v~pGktvAlV 570 (790)
T KOG0056|consen 495 FGTYYRSIQKNFIDMENMFDLLKEEPEVVD--LPGAPP-LKVTQGKIEFSNVTFAYDPGKP-VLSDISFTVQPGKTVALV 570 (790)
T ss_pred HHHHHHHHHHhhhhHHHHHHHhhcCchhhc--CCCCCC-ccccCCeEEEEEeEEecCCCCc-eeecceEEecCCcEEEEE
Confidence 999999999999999999999986666422 111122 2235799999999999999876 999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhh
Q 000671 1250 GRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQL 1328 (1361)
Q Consensus 1250 GrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~ 1328 (1361)
||||+||||++++||||||.++|+|+|||+||+.+..++||++||+||||.+||++||-.||.... .++|||+.+|.+.
T Consensus 571 G~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkA 650 (790)
T KOG0056|consen 571 GPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKA 650 (790)
T ss_pred CCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997322 4899999999998
Q ss_pred C---------cCCCCCCcccccCCchhhhhhccccccceec
Q 000671 1329 T---------PNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1329 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1361)
| |++++|.. ||.|--+|.|+||+|.+
T Consensus 651 A~IHdrIl~fPegY~t~V------GERGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 651 AQIHDRILQFPEGYNTRV------GERGLKLSGGEKQRVAI 685 (790)
T ss_pred hhHHHHHhcCchhhhhhh------hhcccccCCcchhhHHH
Confidence 8 57777776 67889999999999964
No 68
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=8.1e-47 Score=473.49 Aligned_cols=463 Identities=15% Similarity=0.103 Sum_probs=338.5
Q ss_pred HHHHHHHH-hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 887 KPFMDYLN-VSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLK 965 (1361)
Q Consensus 887 ~~y~~y~~-~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~ 965 (1361)
+..++|++ ..++. +++.+++.++.....+..++.++.+.+.........+..++++.++..++.++..++....+.+
T Consensus 6 ~~l~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (555)
T TIGR01194 6 GEILALLRSPFPAI--TAFSIALGLAGGLAIIALLASINNAIHEENFLGQGSLFSFGGLCLLALLFRIGADIFPAYAGMH 83 (555)
T ss_pred HHHHHHHhhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455665 33322 2233333334444555566666666543211111122234455666677888888999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000671 966 ASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAM 1045 (1361)
Q Consensus 966 ~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~ 1045 (1361)
...++|.++++++++.|++||++.++|++++|+++|++.++..+.. +..++..++.+++.++++++.+|.+.++++..+
T Consensus 84 ~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~ 162 (555)
T TIGR01194 84 IIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAI 162 (555)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998754 666777777888888889999999988776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000671 1046 VAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVD--RFFQNYLKLVDIDASLFFHTNGVMEWLIL 1123 (1361)
Q Consensus 1046 ~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1123 (1361)
++...+..+..+..++..+......+.+.+++.|.+.|+++||+|+.++ ...+++.+..++..+..............
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
T TIGR01194 163 IIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAEN 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555555555555556666677889999999999999999999954 45666777666665554433322222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCC--
Q 000671 1124 RVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV-- 1201 (1361)
Q Consensus 1124 rl~~l~~l~~~~~~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~-- 1201 (1361)
..+++..+...+..++. ...+.++.|.+..++.|+..+..|+..+...+.++++..+|.+|+.++++.+++++...
T Consensus 243 ~~~~~~~~~~~~~~~~~--~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~ 320 (555)
T TIGR01194 243 FGQLLFFLLIGCALFAA--AMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELEL 320 (555)
T ss_pred HHHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 22222221111111111 12368899999999999999999999999999999999999999999976432221110
Q ss_pred CC-CCC--CCCCCCcceEEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 000671 1202 ED-KRP--PSSWPFKGRIELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275 (1361)
Q Consensus 1202 ~~-~~~--~~~wp~~G~I~f~nVs~~Y~~~---~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~ 1275 (1361)
++ ... .+..+..++|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.
T Consensus 321 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~ 400 (555)
T TIGR01194 321 SDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL 400 (555)
T ss_pred cccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 00 000 0111235789999999999643 23599999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCCCC-CcccccCCchhhhhhcccc
Q 000671 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSRNS-RIDIDFPTFNKFCCRIIKT 1354 (1361)
Q Consensus 1276 IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1354 (1361)
+||+||++++.+++|+++++|||||+||++|+|+|+.| +.+|++++++++.++-.... ....++.+ ..++|.||
T Consensus 401 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t---~~~LSgGq 475 (555)
T TIGR01194 401 LDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFST---TTALSTGQ 475 (555)
T ss_pred ECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCC---cccCCHHH
Confidence 99999999999999999999999999999999999865 57899999999998633211 11112222 27899999
Q ss_pred cccee
Q 000671 1355 KQLVT 1359 (1361)
Q Consensus 1355 ~~~~~ 1359 (1361)
||++.
T Consensus 476 ~qRla 480 (555)
T TIGR01194 476 QKRLA 480 (555)
T ss_pred HHHHH
Confidence 99974
No 69
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.4e-48 Score=521.70 Aligned_cols=190 Identities=21% Similarity=0.281 Sum_probs=155.6
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc----cCCCcEEEEcC------------eEEEEecCCcC-CCC
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI----PKISGTVNLYG------------SIAYVSQTSWI-QSG 672 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~----~~~~G~v~~~g------------~iayv~Q~~~i-~~~ 672 (1361)
+++|+|+|+++++||+++|+|||||||||||++|.|.. +|++|+|.++| .++|++|++.+ .+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46899999999999999999999999999999999996 46899999987 28999998755 567
Q ss_pred CHHHHhhcCCC----------CCHHHH-----HHHHHHhcchHHHhcCCCCCCccccC-CCCCCChHHHHHHHHHHHHcc
Q 000671 673 SIRDNILYGKP----------MDKARY-----DKAIKACALDKDINNFDHGDLTEIGQ-RGLNLSGGQKQRIQLARAVYN 736 (1361)
Q Consensus 673 ti~eni~~g~~----------~~~~~~-----~~~~~~~~l~~dl~~l~~gd~t~ig~-~g~~LSgGQkqRv~lARal~~ 736 (1361)
||+||+.|+.. ..++.+ +.+++..+|.+ --+|.+|+ ....|||||||||+||||++.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-------TRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-------ccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 99999988521 222222 22344444432 23456654 457899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCc-hHHh-hcCeEEEEeCCeEEEecChHHHH
Q 000671 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQV-EFLS-EVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 737 ~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~-~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
+|++++|||||+|||+.++..+.+.+.+... .|+|+|+++||+ +.+. .+|+|++|++|++++.|+.+++.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999877665544 489999999997 4554 58999999999999999998874
No 70
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-47 Score=478.01 Aligned_cols=195 Identities=24% Similarity=0.347 Sum_probs=163.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 3689999999999999999999999999999999999999999999876 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCCC-------C---CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGKP-------M---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~~-------~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
++|++|++.++ +.|++||+.++.. . +. ++..++++.+++... ...+..+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHH
Confidence 89999998664 5699999987531 0 11 223344444444321 235677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 999999999999999999999999999999999988766554568999999999999875 899999999999876653
No 71
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-48 Score=486.22 Aligned_cols=206 Identities=20% Similarity=0.359 Sum_probs=168.8
Q ss_pred CcEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 593 RSVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
..++++|++++|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3689999999996422 24699999999999999999999999999999999999999999987643
Q ss_pred --------------eEEEEecCC--cC-CCCCHHHHhhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccc
Q 000671 659 --------------SIAYVSQTS--WI-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEI 713 (1361)
Q Consensus 659 --------------~iayv~Q~~--~i-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~i 713 (1361)
.||||+|+| -+ ...||+||+.++. ..+. ++..++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 489999998 34 4579999998752 1222 344555666655310 0112
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEE
Q 000671 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVL 791 (1361)
Q Consensus 714 g~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l 791 (1361)
..+..+|||||||||+||||++.+|++|||||||++||+.+++.+.+.+.....+ |+|+|+||||++.+.. ||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 3567899999999999999999999999999999999999999998765554433 8999999999999865 8999999
Q ss_pred eCCeEEEecChHHHH
Q 000671 792 EGGQITQSGNYQELL 806 (1361)
Q Consensus 792 ~~G~i~~~g~~~~l~ 806 (1361)
++|++++.|+++++.
T Consensus 243 ~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 243 YQGEAVETGSVEQIF 257 (623)
T ss_pred eCCeecccCCHHHhh
Confidence 999999999877764
No 72
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-47 Score=454.91 Aligned_cols=206 Identities=25% Similarity=0.396 Sum_probs=169.9
Q ss_pred cEEEEeeEEEeCCCCC-CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC----CcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI----SGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~----~G~v~~~g---------- 658 (1361)
-++++|.+.+|..... .++++|+||++.+||+++|+|.|||||||+.++|+|..++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999876532 25899999999999999999999999999999999999987 89998876
Q ss_pred -------eEEEEecCCc-CCC--CCHHHHhh----cCCCC----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW-IQS--GSIRDNIL----YGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~-i~~--~ti~eni~----~g~~~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.|||++|+|+ .+| .||.+-|. ..... ..++..+.++..+|.+.... ...+..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 4999999985 233 57766664 22222 22344455555665443322 3578899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
||||||||.||+|+..+|+++|+||||+|||+.++++|.+.+.... ..|.++|+||||+..+.+ ||+|+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998766554 358999999999999887 89999999999999
Q ss_pred ecChHHHHhc
Q 000671 799 SGNYQELLLA 808 (1361)
Q Consensus 799 ~g~~~~l~~~ 808 (1361)
.|+.+++.++
T Consensus 236 ~G~~~~i~~~ 245 (539)
T COG1123 236 TGPTEEILSN 245 (539)
T ss_pred ecCHHHHHhc
Confidence 9999998753
No 73
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-45 Score=463.03 Aligned_cols=439 Identities=14% Similarity=0.104 Sum_probs=338.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC--C--Cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000671 909 QSGFVGLQAAATYWLAYAIQIP--K--ITS-GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPM 983 (1361)
Q Consensus 909 ~~~~~~~~~~~~~wl~~~~~~~--~--~~~-~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~ 983 (1361)
.++...+.++.++.+...++.. . ... ..++.+++++.++..++.+++.++....+.+....++.++++++++.|+
T Consensus 15 ~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 94 (544)
T TIGR01842 15 SFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATL 94 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3344455556666666555421 1 111 1233445555566777888888999999999999999999999999998
Q ss_pred ccccccChhHHHHHHhcCHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 984 LFFDSTPVGRILTRLSSDLSILDFDIPF-SIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062 (1361)
Q Consensus 984 ~fFd~tp~GrIlnRfs~Di~~id~~l~~-~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l 1062 (1361)
.. .|..++++++|++.+...+.. .+..++..++.++ .++++++.+|++.++++..+++.+.+..++.+..++.
T Consensus 95 ~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~ 168 (544)
T TIGR01842 95 RR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKP 168 (544)
T ss_pred cC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 43 367789999999999987766 4445555544444 3456788888887766554444444555555555555
Q ss_pred HHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh
Q 000671 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLV 1141 (1361)
Q Consensus 1063 ~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~-~~~~~v 1141 (1361)
.+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+..........+......++..+..++ .++.++
T Consensus 169 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 248 (544)
T TIGR01842 169 LKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAY 248 (544)
T ss_pred HHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677788899999999999999999999999999999888877766655544444443333333332222 222334
Q ss_pred hhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEE
Q 000671 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1361)
Q Consensus 1142 l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nV 1221 (1361)
++..|.+++|.+.+++.|+..+..|+..+...+.+++....+.+|+.++++.++|.+. ....+ +.+|.|+|+||
T Consensus 249 l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v 322 (544)
T TIGR01842 249 LAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENV 322 (544)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEE
Confidence 5568999999999999999999999999999999999999999999999987665321 11111 23578999999
Q ss_pred EEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCccc
Q 000671 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1361)
Q Consensus 1222 s~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~ 1301 (1361)
+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+.+++.+.+|+++++|||||+
T Consensus 323 ~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 402 (544)
T TIGR01842 323 TIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVE 402 (544)
T ss_pred EEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcc
Confidence 99997655569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1302 LFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1302 LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+|+||+||||..++ +++|+|+++|++.++-.. .-.-|+|+..++.|.++|.||||++.
T Consensus 403 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~ 464 (544)
T TIGR01842 403 LFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIA 464 (544)
T ss_pred cccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHH
Confidence 99999999998554 489999999999885321 11225688888999999999999974
No 74
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-45 Score=434.03 Aligned_cols=418 Identities=17% Similarity=0.146 Sum_probs=351.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHH
Q 000671 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1361)
Q Consensus 936 ~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~ 1015 (1361)
.+++..++..++..+..+.+.....+.+.++...+|+++++++.+.+..|-...|+|+....++.-++.++..+...+..
T Consensus 41 ~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq 120 (559)
T COG4988 41 PLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhccc
Q 000671 1016 VAASGTELLAIIGIMTFVTWQVLVVA---IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNM 1092 (1361)
Q Consensus 1016 ~~~~~~~~i~~i~v~~~~~~~l~lv~---ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~ 1092 (1361)
++.+.+.-+..++.+++.+|...++. .|+++++.++ ....++...+..-.+...+.+||-+.+.|+.|+|+|++
T Consensus 121 ~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~ 197 (559)
T COG4988 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGR 197 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcc
Confidence 99998888888899999999876554 4555555443 33344444455556677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcC-CccCHHHHHHHHHHHHHHHHHHHHH
Q 000671 1093 VDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFL-VLIPR-GYVAPGLVGLSLSYAFTLTGTQVFL 1170 (1361)
Q Consensus 1093 e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~-vl~~~-g~is~g~~gl~l~ya~~l~~~l~~l 1170 (1361)
.+...++..+...+..+..+...+..---+..+|++..+.+..+++.+ ..+.. |.++....-+++..+-.+..|+..+
T Consensus 198 ~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~l 277 (559)
T COG4988 198 TEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDL 277 (559)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHH
Confidence 999999998888888887777666666666778888888776666653 33344 7888877778888899999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEc
Q 000671 1171 SRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVG 1250 (1361)
Q Consensus 1171 ~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVG 1250 (1361)
...|..-.++..+.|.+..+++.|.+.+.. .......|-...+|+.+|++++|+++. ++++|+||+++|||++||||
T Consensus 278 Gs~fH~~~~g~aa~d~i~~~l~~~~~~~~~--~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG 354 (559)
T COG4988 278 GSFFHAAAAGEAAADKLFTLLESPVATPGS--GEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVG 354 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcCCCCCCCC--ccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEEC
Confidence 999999999999999999999877664421 111123343445777889999997665 69999999999999999999
Q ss_pred CCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhC
Q 000671 1251 RTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLT 1329 (1361)
Q Consensus 1251 rTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~ 1329 (1361)
+||||||||+++|.||.+|++|+|.+||+|.++++.+++|+++++|||+|++|+|||||||.-++ ..|||||++|++++
T Consensus 355 ~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a 434 (559)
T COG4988 355 ASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQA 434 (559)
T ss_pred CCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999996444 37999999999999
Q ss_pred cCCCCC--CcccccCCchhhhhhcccccccee
Q 000671 1330 PNSRNS--RIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1330 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+-..-. .-|+|+.-+|+|.++|.||+|+|.
T Consensus 435 ~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRla 466 (559)
T COG4988 435 GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLA 466 (559)
T ss_pred cHHHhhcCCCcccchhccCCCCCCHHHHHHHH
Confidence 633222 568999999999999999999985
No 75
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-47 Score=474.28 Aligned_cols=194 Identities=24% Similarity=0.378 Sum_probs=162.0
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC--CCcEEEEcC-------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~--~~G~v~~~g------------- 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 5899999999963 3699999999999999999999999999999999999996 899999876
Q ss_pred -eEEEEecCCcCC-CCCHHHHhhcCCC------CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 -~iayv~Q~~~i~-~~ti~eni~~g~~------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.++ +.|++||+.++.. .+. ++.+++++..++... ...+..+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-----------PATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHHHH
Confidence 289999998665 5699999998642 122 223344444433211 23567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|++||||++.+|+++||||||++||+.....+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 9999999999999999999999999999999987766554568999999999999876 89999999999987653
No 76
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-45 Score=425.58 Aligned_cols=410 Identities=18% Similarity=0.205 Sum_probs=335.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHH
Q 000671 943 GVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022 (1361)
Q Consensus 943 ~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~ 1022 (1361)
++++...+..|+..++.+....++-.++|.++|+++...+..-..+-..|+++||+..|++.+|...-..+...+..+..
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 55678888899999999999999999999999999999999999999999999999999999999988888888877777
Q ss_pred HHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHH
Q 000671 1023 LLAIIGIMTFVTWQVLVVA-IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1361)
Q Consensus 1023 ~i~~i~v~~~~~~~l~lv~-ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~ 1101 (1361)
.+++.+.+.+++|++.+.. +.++.....+...+.+.+|...+.-...++.+.++|.|-+.|....+.||+++++.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 7777777777888775543 444444555666667777888887788899999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000671 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLS-RWYCYLAN 1179 (1361)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~-~~~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~-~~~~~le~ 1179 (1361)
+.-+...+..........|-...+.++..+.++ ..++.+.....|..+.-.+.+++.-++....++.-+. ..+.++.+
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhH
Confidence 999999999999999999999888888776655 3333344344565553333333333344455555555 56688999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcc-eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHH
Q 000671 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKG-RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1361)
Q Consensus 1180 ~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G-~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKST 1258 (1361)
...|.+|+.+..+.++|.... +.. -|..| .++++||+|+|+.+.++||+|+||++++||||||+|||||||||
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~--~~~----~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFP--DEQ----TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred HHHHHHHHhhhccCCcccCCC--ccc----cCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 999999999988777765432 111 12222 89999999999888888999999999999999999999999999
Q ss_pred HHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCcCCC---C
Q 000671 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTPNSR---N 1334 (1361)
Q Consensus 1259 L~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~~~~---~ 1334 (1361)
++++|.|-|+|++|+|+.+|+|++.++-+++|+.|++++|.+.||+||+|+||.-- .+.||||+|+||++++-+. +
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999522 2489999999999985222 2
Q ss_pred CCcccccCCchhhhhhccccccce
Q 000671 1335 SRIDIDFPTFNKFCCRIIKTKQLV 1358 (1361)
Q Consensus 1335 ~~~~~~~~~~~~~~~~~~~~~~~~ 1358 (1361)
.-=|+++.-+++|-.+|.||||+.
T Consensus 460 ~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred ChhhhhchhccCCCcCCchHHHHH
Confidence 222556666778888888999975
No 77
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.5e-47 Score=471.33 Aligned_cols=192 Identities=22% Similarity=0.401 Sum_probs=158.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC--CCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~--~~G~v~~~g-------------- 658 (1361)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 688999999963 3699999999999999999999999999999999999987 799999876
Q ss_pred eEEEEecCCcCC-CCCHHHHhhcCCCC-------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 SIAYVSQTSWIQ-SGSIRDNILYGKPM-------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ~iayv~Q~~~i~-~~ti~eni~~g~~~-------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.++ +.|++||+.++... +. ++.+++++.+++.... ...+..+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 389999998664 56999999886421 11 1233444444432111 01346789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEe
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1361)
|++||||++.+|+++||||||++||+...+.+.+.+.+...+|+|+|++||+++++.. ||+|++|++|+++..
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 9999999999999999999999999999999988665554568999999999999876 899999999998754
No 78
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.6e-47 Score=476.05 Aligned_cols=204 Identities=20% Similarity=0.363 Sum_probs=165.6
Q ss_pred cEEEEeeEEEeCCC-CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000671 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g--------- 658 (1361)
-++++|++++|+.. ...++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999642 124699999999999999999999999999999999999986 799998765
Q ss_pred --------eEEEEecCCc--C-CCCCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 659 --------SIAYVSQTSW--I-QSGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 659 --------~iayv~Q~~~--i-~~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
.+||++|+|. + ...|++||+.++. ..+ .++.+++++.+++.+... ....+..+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3899999984 3 3469999986421 122 234556666666642110 11256789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
|||||||||+||||++.+|+++||||||++||+...+.+.+.+.+...+ |+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999998766554443 8999999999999875 8999999999999
Q ss_pred EecChHHH
Q 000671 798 QSGNYQEL 805 (1361)
Q Consensus 798 ~~g~~~~l 805 (1361)
+.|+++++
T Consensus 237 ~~g~~~~~ 244 (529)
T PRK15134 237 EQNRAATL 244 (529)
T ss_pred EeCCHHHH
Confidence 88876554
No 79
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.9e-47 Score=470.52 Aligned_cols=193 Identities=21% Similarity=0.348 Sum_probs=161.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4889999999963 3689999999999999999999999999999999999999999999876 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCCC-------CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGKP-------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~~-------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
++|++|++.++ +.|++||+.++.. .+. ++..++++.+++... ...+..+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHH
Confidence 89999997654 5799999998642 122 223344444444321 125667899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++|||++.+.. ||+|++|++|++++.|
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999987665554568899999999999876 8999999999998654
No 80
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2e-46 Score=465.26 Aligned_cols=198 Identities=24% Similarity=0.417 Sum_probs=169.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5899999999974 3589999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCCCCC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGKPMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~~~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+||++|++.++ +.|++||+.++.... +++..++++..++.... ..+..+||||||||++||||++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-----------DSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 89999998765 569999999875322 23455566666654322 2566789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999988766554568999999999999865 899999999999988776553
No 81
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.5e-46 Score=465.55 Aligned_cols=197 Identities=23% Similarity=0.326 Sum_probs=167.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
-++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3789999999964 3589999999999999999999999999999999999999999998765 27
Q ss_pred EEEecCCcC---------CCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTSWI---------QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~~i---------~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|++.. +..|++||+.++.. ++++.+++++..++.+..+ .+..+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHHHH
Confidence 999998642 14689999876532 3456677788777754333 46678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
||++.+|+++||||||++||+...+.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999988776555568999999999999876 899999999999988765553
No 82
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.4e-44 Score=478.43 Aligned_cols=202 Identities=24% Similarity=0.354 Sum_probs=174.3
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~i 660 (1361)
..|+++|+++.|+++ ++++++|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++| .+
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 468999999999632 25699999999999999999999999999999999999999999999987 38
Q ss_pred EEEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
|||||++.++ ..|++|||.|+.. .. +++.++.++.++|.+.. .++..+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 9999998765 5699999987421 22 23456667776665433 2567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|++.+|+++||||||||||+..++.+++.+.+. .+|+|+|++||+++.+.. ||||++|++|+++..|+.+++.+
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999876554 568999999999999876 89999999999999999999864
No 83
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-46 Score=463.60 Aligned_cols=197 Identities=20% Similarity=0.368 Sum_probs=161.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCC-C
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ-S 671 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~-~ 671 (1361)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| +|+|++|++.++ +
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 689999999963 3699999999999999999999999999999999999999999999976 699999997654 5
Q ss_pred CCHHHHhhcCCC-C--------------------------------------CHHHHHHHHHHhcchHHHhcCCCCCCcc
Q 000671 672 GSIRDNILYGKP-M--------------------------------------DKARYDKAIKACALDKDINNFDHGDLTE 712 (1361)
Q Consensus 672 ~ti~eni~~g~~-~--------------------------------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ 712 (1361)
.|++||+.++.. . .+++..++++.+++....
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---------- 148 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ---------- 148 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH----------
Confidence 699999987531 0 001222233333332111
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEE
Q 000671 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1361)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1361)
......+||||||||++||||++.+|+++||||||++||+...+.+.+.+. ..++|+|+|||+++.+.. ||+|++|
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHDRHFLNSVCTHMADL 225 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhcceEEEE
Confidence 123567899999999999999999999999999999999999999877543 247899999999999876 8999999
Q ss_pred eCCeEE-EecChHHHHh
Q 000671 792 EGGQIT-QSGNYQELLL 807 (1361)
Q Consensus 792 ~~G~i~-~~g~~~~l~~ 807 (1361)
++|+++ +.|+++++++
T Consensus 226 ~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 226 DYGELRVYPGNYDEYMT 242 (530)
T ss_pred eCCEEEEecCCHHHHHH
Confidence 999994 7898888753
No 84
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.7e-46 Score=468.00 Aligned_cols=193 Identities=26% Similarity=0.401 Sum_probs=160.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc--cCCCcEEEEc---------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLY--------------- 657 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~--~~~~G~v~~~--------------- 657 (1361)
++++|++++|+. .++|+|+||++.+||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 468999999963 36999999999999999999999999999999999997 7999999875
Q ss_pred --------C-----------------------eEEEEecC-CcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhc
Q 000671 658 --------G-----------------------SIAYVSQT-SWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACA 697 (1361)
Q Consensus 658 --------g-----------------------~iayv~Q~-~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~ 697 (1361)
| .++|++|+ +.++ ..|++||+.++.. .+ .++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 28999997 4544 5699999987421 22 234566677777
Q ss_pred chHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEc
Q 000671 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVT 776 (1361)
Q Consensus 698 l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvt 776 (1361)
+...++ .+..+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+.+... .|+|+|+||
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 754332 45678999999999999999999999999999999999999999876655434 489999999
Q ss_pred cCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 777 HQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 777 H~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
||++.+.. ||+|++|++|++++.|+
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~ 252 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGT 252 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecC
Confidence 99999875 89999999999876543
No 85
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-46 Score=462.06 Aligned_cols=191 Identities=23% Similarity=0.354 Sum_probs=161.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 5889999999964 3599999999999999999999999999999999999999999998875 3
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCC------CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKP------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
|+|++|++.++. .|++||+.++.. .+. ++..++++.+++... ...+..+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHHHH
Confidence 899999987654 699999998631 121 234445555544321 1256779999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999988766554568999999999999866 89999999999874
No 86
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.9e-45 Score=460.74 Aligned_cols=206 Identities=27% Similarity=0.366 Sum_probs=162.1
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCC
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~ 671 (1361)
-++++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .|||++|+|.+++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5899999999962 24699999999999999999999999999999999999999999999864 6999999998764
Q ss_pred -CCHHHHhhcCCC-C----------------CHH-------HHHHH---HHHh-------cchHHHhcCCCCCCccccCC
Q 000671 672 -GSIRDNILYGKP-M----------------DKA-------RYDKA---IKAC-------ALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 672 -~ti~eni~~g~~-~----------------~~~-------~~~~~---~~~~-------~l~~dl~~l~~gd~t~ig~~ 716 (1361)
.|++||+.++.. + ..+ .+.++ ++.+ .+..-++.+.-. ....+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP---PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC---cccCc
Confidence 599999987531 0 000 00000 0000 011112222211 12456
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
..+|||||||||+||||++.+|+++||||||++||+...+++.+.+. .. +.|+|+|||+++++.. ||+|++|++|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~-~~--~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLH-DY--PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHH-hC--CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 78999999999999999999999999999999999999999876543 32 3599999999999876 79999999999
Q ss_pred EE-EecChHHHHh
Q 000671 796 IT-QSGNYQELLL 807 (1361)
Q Consensus 796 i~-~~g~~~~l~~ 807 (1361)
++ +.|+++++.+
T Consensus 238 i~~~~g~~~~~~~ 250 (556)
T PRK11819 238 GIPWEGNYSSWLE 250 (556)
T ss_pred EEEecCCHHHHHH
Confidence 86 7888887653
No 87
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.7e-44 Score=448.53 Aligned_cols=397 Identities=14% Similarity=0.103 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHH
Q 000671 946 TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1361)
Q Consensus 946 ~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~ 1025 (1361)
++..++.+++.++....+.+...+++.++++++++.|++||+++++|++++|+++|++.+...+. .+..++..++.+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 59 LLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33345667788888889999999999999999999999999999999999999999999987654 46667778888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccH---HHHHHHHHH
Q 000671 1026 IIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV---DRFFQNYLK 1102 (1361)
Q Consensus 1026 ~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e---~~f~~~~~~ 1102 (1361)
.++++++++|.++++++..+++..++..++.+..++..+..++..+...+++.|.++|+.+|+ ++.+ +.+.+++.+
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 888999999999888777777766666666666666666666778889999999999999995 5543 456777777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000671 1103 LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLI-PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI 1181 (1361)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~vl~-~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~ 1181 (1361)
..++..+.................++.. +..+++.+.. ..+..+.+.++++..+.+.+..|+..+...+.+++...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMML---GAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666555443322221111111111111 1111111111 01122334444455555567789999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHH
Q 000671 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261 (1361)
Q Consensus 1182 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~ 1261 (1361)
.+.+|+.++.+.++|++. ++..+. |..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||++
T Consensus 294 ~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred HHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999999998765543211 111111 223689999999999743 45999999999999999999999999999999
Q ss_pred HHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCCCCCccccc
Q 000671 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSRNSRIDIDF 1341 (1361)
Q Consensus 1262 ~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~~~~~~~~~ 1341 (1361)
+|.|+|+|++|+|++||+|+++++.+++|+++++|||||++|+||+++| . ...+|++++++++.++.+.....+.+.
T Consensus 368 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~--~~~~~~~~~~~~~~~~l~~~~~~~~~~ 444 (547)
T PRK10522 368 LLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-G--KPANPALVEKWLERLKMAHKLELEDGR 444 (547)
T ss_pred HHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc-c--CchHHHHHHHHHHHcCCchhhhccccC
Confidence 9999999999999999999999999999999999999999999999999 3 357899999999998654433322111
Q ss_pred CCchhhhhhcccccccee
Q 000671 1342 PTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1342 ~~~~~~~~~~~~~~~~~~ 1359 (1361)
..|.++|.||||++.
T Consensus 445 ---~~G~~LSgGq~qRl~ 459 (547)
T PRK10522 445 ---ISNLKLSKGQKKRLA 459 (547)
T ss_pred ---CCCCCCCHHHHHHHH
Confidence 248999999999974
No 88
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-46 Score=458.14 Aligned_cols=190 Identities=26% Similarity=0.342 Sum_probs=157.9
Q ss_pred EeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eEEEE
Q 000671 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SIAYV 663 (1361)
Q Consensus 598 ~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~iayv 663 (1361)
+|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 ~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 678888863 3699999999999999999999999999999999999999999999876 38999
Q ss_pred ecCCcC-CCCCHHHHhhcCCC------CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 664 SQTSWI-QSGSIRDNILYGKP------MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 664 ~Q~~~i-~~~ti~eni~~g~~------~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
+|++.+ .+.|++||+.++.. .+.+ +.+++++.+++.. ....+..+|||||||||+|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHHHH
Confidence 999865 46799999987631 1221 2233344333321 123567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999988766554568999999999999865 89999999999987654
No 89
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.8e-45 Score=457.26 Aligned_cols=206 Identities=26% Similarity=0.351 Sum_probs=165.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCC-
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ- 670 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~- 670 (1361)
-++++|++++|+.+ +++|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.+++ .|||++|+|+++
T Consensus 4 ~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 48899999999622 3699999999999999999999999999999999999999999999874 699999999875
Q ss_pred CCCHHHHhhcCCCC-------------------C--------HHHHHHHHHHhcch-------HHHhcCCCCCCccccCC
Q 000671 671 SGSIRDNILYGKPM-------------------D--------KARYDKAIKACALD-------KDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 671 ~~ti~eni~~g~~~-------------------~--------~~~~~~~~~~~~l~-------~dl~~l~~gd~t~ig~~ 716 (1361)
+.|++|||.++... + .+++.++++.++.. .-++.+... ....+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP---PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC---cccCc
Confidence 56999999875310 1 01233344444432 112222211 12456
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
..+||||||||++||||++.+|+++||||||++||+.+.+++.+.+.. . ++|+|+|||+++++.. ||++++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-Y--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 789999999999999999999999999999999999999998875433 2 3599999999999876 79999999999
Q ss_pred EE-EecChHHHHh
Q 000671 796 IT-QSGNYQELLL 807 (1361)
Q Consensus 796 i~-~~g~~~~l~~ 807 (1361)
++ ..|+++++.+
T Consensus 236 i~~~~g~~~~~~~ 248 (552)
T TIGR03719 236 GIPWEGNYSSWLE 248 (552)
T ss_pred EEEecCCHHHHHH
Confidence 76 7788887753
No 90
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-44 Score=413.42 Aligned_cols=416 Identities=20% Similarity=0.268 Sum_probs=315.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHH
Q 000671 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1361)
Q Consensus 936 ~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~ 1015 (1361)
..+..|.+..+++.+|..++.++++.+..++-++...+.|++.+.+.++||.+..+|.+.+++.+-...|...+...+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 45667888889999999999999999999999999999999999999999999999999888888888888777777777
Q ss_pred HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccchHHHHHHHHhcchHHHHhcccH
Q 000671 1016 VAASGTELLAIIGIMTF-VTWQVLVVAIFAMVAVRFVQRYYIATARE-LIRINGTTKAPVMNYTAETSQGVVTIRAFNMV 1093 (1361)
Q Consensus 1016 ~~~~~~~~i~~i~v~~~-~~~~l~lv~ip~~~~~~~~~~~y~~~sr~-l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e 1093 (1361)
++..++.+....+.+.+ ..+.+.++.+..+..|..+ ..+...-|. .++....+.....+..-|++.+-.+||+||.|
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~-Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAF-TIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhee-EEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 76666665555444433 3445544444444333221 111111222 22333445555677889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCccCHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1094 DRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFL-VLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSR 1172 (1361)
Q Consensus 1094 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~-vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~ 1172 (1361)
++..++|+..+.+..+...........+.+.-..+.++....+..++ --+..+.++.|.+.+..+...++..+++.+..
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~ 313 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGS 313 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHH
Confidence 99999999999888777666555444444433333322222222211 11245688999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCC
Q 000671 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252 (1361)
Q Consensus 1173 ~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrT 1252 (1361)
.+.++-+++.-.+-.+...+.... ..+...|.. +..|.|+|+||+|.|.|+. +||||+||+|++||||||||++
T Consensus 314 vyr~~~q~l~Dm~~~~~l~~~~~~---i~~~~~~i~--~~~~~I~F~dV~f~y~~k~-~iL~gvsf~I~kGekVaIvG~n 387 (591)
T KOG0057|consen 314 VYRELRQALTDMRTLFILLEVDED---IQEAALPIE--LFGGSIEFDDVHFSYGPKR-KVLKGVSFTIPKGEKVAIVGSN 387 (591)
T ss_pred HHHHHHHHHHhHHHHHhhhhhhhh---hhhccCCcc--cCCCcEEEEeeEEEeCCCC-ceecceeEEecCCCEEEEECCC
Confidence 999998888777666543321111 111111221 3457899999999998765 4999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcC
Q 000671 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPN 1331 (1361)
Q Consensus 1253 GSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~ 1331 (1361)
||||||++++|+||+| .+|+|+|||+||++++++.||+.||+||||..||++||-+||...+ ..+|||+.+++|+++-
T Consensus 388 GsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~ 466 (591)
T KOG0057|consen 388 GSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGL 466 (591)
T ss_pred CCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCc
Confidence 9999999999999999 9999999999999999999999999999999999999999997443 4899999999999841
Q ss_pred -CCCCCc--ccccCCchhhhhhcccccccee
Q 000671 1332 -SRNSRI--DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1332 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
..-.+. |-++.-+|-||-+|.||||+|.
T Consensus 467 hd~i~~l~~GY~T~VGerG~~LSGGekQrvs 497 (591)
T KOG0057|consen 467 HDVISRLPDGYQTLVGERGLMLSGGEKQRVS 497 (591)
T ss_pred HHHHHhccccchhhHhhcccccccchHHHHH
Confidence 111122 3345568999999999999985
No 91
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-45 Score=426.48 Aligned_cols=263 Identities=25% Similarity=0.361 Sum_probs=222.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEeeEEEeCCC
Q 000671 528 APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPE 607 (1361)
Q Consensus 528 ~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~ 607 (1361)
++++|+.+|+++++|+.+..++..+|..... .+|++.|+..+|.+...+.. ..+.++.|+++|++++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 6799999999999999999999988876543 56999999877754321111 12344689999999999753
Q ss_pred CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------------eEEEEecCC
Q 000671 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------------SIAYVSQTS 667 (1361)
Q Consensus 608 ~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g---------------~iayv~Q~~ 667 (1361)
..++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| .++|+||+|
T Consensus 94 -~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 94 -TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred -CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 3569999999999999999999999999999999999996 5799987654 599999999
Q ss_pred cCCCCCHHHHhhcCCCC---C-HH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000671 668 WIQSGSIRDNILYGKPM---D-KA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 668 ~i~~~ti~eni~~g~~~---~-~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1361)
|++++|++|||.|+..+ + ++ .+.++++.|++..+++ +.+++++.+||||||||++||||++++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999986432 1 22 3677888888866553 56789999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|+||||||+|||+++.+++. +++....+++|+|++||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 246 IlLLDEPts~LD~~~~~~i~-~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKIE-ELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999965 455666668999999999999987 999999999999999999998754
No 92
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-43 Score=442.56 Aligned_cols=196 Identities=23% Similarity=0.355 Sum_probs=155.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCCC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~~ 672 (1361)
|.++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.....
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 689999999964 3699999999999999999999999999999999999999999999987 58999997544445
Q ss_pred CHHHHhhcCCC-C---------------------------------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCC
Q 000671 673 SIRDNILYGKP-M---------------------------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1361)
Q Consensus 673 ti~eni~~g~~-~---------------------------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 718 (1361)
|+.+++.-+.. + .+.+..++++.+++.. .....+..
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~ 148 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN----------EQLERPVS 148 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc----------hhhcCchh
Confidence 66665542110 0 0112222222222211 01235678
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
+|||||||||+||||++.+||++||||||++||+.+..++.+.+.. . +.|+|+||||++++.. ||+|++|++|++.
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~-~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS-Y--QGTLILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 8999999999999999999999999999999999999998765433 2 5699999999999976 8999999999996
Q ss_pred -EecChHHHH
Q 000671 798 -QSGNYQELL 806 (1361)
Q Consensus 798 -~~g~~~~l~ 806 (1361)
+.|+|++..
T Consensus 226 ~~~g~~~~~~ 235 (638)
T PRK10636 226 EYTGNYSSFE 235 (638)
T ss_pred EecCCHHHHH
Confidence 578887765
No 93
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-44 Score=374.80 Aligned_cols=202 Identities=26% Similarity=0.424 Sum_probs=178.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
-|+++|++.+|.. ..+|+|||++|++||.++|+|||||||||||++|.|+.+|++|+|.++| +
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4889999999985 3599999999999999999999999999999999999999999999998 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
+|+|+|+..+| ..||.|||..+. ..+ +++..+.++..+|.+..+. .+..|||||||||+|
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-----------yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA-----------YPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-----------CccccCcHHHHHHHH
Confidence 78999998876 569999999862 222 3445567777888776664 456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||||.-+|+++|+|||||||||+...++.+.......+|.|.|+|||++.+.++ ||||+.|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999987766667789999999999999988 7999999999999999999998654
No 94
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2e-42 Score=439.26 Aligned_cols=204 Identities=24% Similarity=0.370 Sum_probs=155.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--EEEEecCCcC-C
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWI-Q 670 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--iayv~Q~~~i-~ 670 (1361)
.++++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|. ++|++|.+.. .
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 3789999999964 36999999999999999999999999999999999999999999999874 7999998643 3
Q ss_pred CCCHHHHhhcCCCC-------------------CHH---HHHHH---HHH-------hcchHHHhcCCCCCCccccCCCC
Q 000671 671 SGSIRDNILYGKPM-------------------DKA---RYDKA---IKA-------CALDKDINNFDHGDLTEIGQRGL 718 (1361)
Q Consensus 671 ~~ti~eni~~g~~~-------------------~~~---~~~~~---~~~-------~~l~~dl~~l~~gd~t~ig~~g~ 718 (1361)
.+++.+++..+... ..+ .+..+ ++. .....-++.+... ...+..
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~----~~~~~~ 155 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD----PDAALS 155 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC----CCCchh
Confidence 46787776432100 000 00000 000 0011112222111 135678
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
+|||||||||+||||++.+|+++||||||++||+.+.+++.+.+.. . +.|+|+||||.+++.. ||+|++|++|+++
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~-~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT-F--QGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh-C--CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999998765543 2 3599999999999976 8999999999997
Q ss_pred -EecChHHHHh
Q 000671 798 -QSGNYQELLL 807 (1361)
Q Consensus 798 -~~g~~~~l~~ 807 (1361)
+.|+|+++..
T Consensus 233 ~~~g~~~~~~~ 243 (635)
T PRK11147 233 SYPGNYDQYLL 243 (635)
T ss_pred EecCCHHHHHH
Confidence 5688877653
No 95
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-42 Score=390.25 Aligned_cols=401 Identities=16% Similarity=0.217 Sum_probs=326.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 000671 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT-FVT 1034 (1361)
Q Consensus 956 ~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~-~~~ 1034 (1361)
..++...+..+.+.+--+.|.|++.+.+.|+-+..+|.+..-...-...|+..+-+.+...+..++.+...++++. ..+
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 3455666777888888889999999999999887777554444444444455555666666666666666555554 468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHH
Q 000671 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1361)
Q Consensus 1035 ~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~ 1114 (1361)
|+++++.+..+++|.++.......--..+|...++.+..++...+++-+-.|++.||.|+.+..+|.+.++.+.++....
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99988888888777776544444444566777777888889999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC
Q 000671 1115 NGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193 (1361)
Q Consensus 1115 ~~~~~wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~ 1193 (1361)
...-.||++.-..+.+......... +.-+..|.++.|.+.....|..+++.|++.+...+.++.++....|+.++.++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 8888898877666554443333332 223457899999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCC-CcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 000671 1194 PPEPPAIVEDKRPPSSWP-FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272 (1361)
Q Consensus 1194 ~~E~~~~~~~~~~~~~wp-~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G 1272 (1361)
+.|.. +....|+-|| ..|.|.|+||+|.|.|..| +|+|+||++++|+||||||++|+||||+.++|+||||+++|
T Consensus 243 ~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 243 EAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred chhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 77643 2333455675 4689999999999998875 99999999999999999999999999999999999999999
Q ss_pred EEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhh
Q 000671 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFC 1348 (1361)
Q Consensus 1273 ~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~ 1348 (1361)
+|.|||.||+++..+.||+.||+||||.+||+.||..|+...+ ..||||+++|++.++-.- .---|.|+.-+|-|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 9999999999999999999999999999999999999997443 489999999999984222 122256777788999
Q ss_pred hhccccccceec
Q 000671 1349 CRIIKTKQLVTV 1360 (1361)
Q Consensus 1349 ~~~~~~~~~~~~ 1360 (1361)
-+|.|+||+|.+
T Consensus 399 klSggekqrvai 410 (497)
T COG5265 399 KLSGGEKQRVAI 410 (497)
T ss_pred eccCchHHHHHH
Confidence 999999999864
No 96
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.6e-41 Score=453.15 Aligned_cols=197 Identities=23% Similarity=0.330 Sum_probs=156.4
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC---CcEEEEcC----------eEEEEecCCcC-CCCCHH
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG----------SIAYVSQTSWI-QSGSIR 675 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~---~G~v~~~g----------~iayv~Q~~~i-~~~ti~ 675 (1361)
..+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+ .+.||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 45899999999999999999999999999999999999998 99999987 38999999754 567999
Q ss_pred HHhhcCCC-------CC-------HH---------HHHHHHHHhc---------chHHHhc--CCCCCCccccCC-CCCC
Q 000671 676 DNILYGKP-------MD-------KA---------RYDKAIKACA---------LDKDINN--FDHGDLTEIGQR-GLNL 720 (1361)
Q Consensus 676 eni~~g~~-------~~-------~~---------~~~~~~~~~~---------l~~dl~~--l~~gd~t~ig~~-g~~L 720 (1361)
||+.|+.. ++ ++ +++..++++. .+.-++. +.+-.+|.+|++ ...|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99988421 10 01 1111111111 1112233 333346777654 4789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCch-H-HhhcCeEEEEeCCeEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVE-F-LSEVDRILVLEGGQIT 797 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~-~-l~~~d~i~~l~~G~i~ 797 (1361)
||||||||+|||+++.+|++++|||||+|||+.++.++.+.+.+... .|+|+|+++|++. . ...+|+|++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 99999999999999999999999999999999999999876655443 5899999999973 4 4558999999999999
Q ss_pred EecChHHHH
Q 000671 798 QSGNYQELL 806 (1361)
Q Consensus 798 ~~g~~~~l~ 806 (1361)
+.|+.+++.
T Consensus 418 y~G~~~~~~ 426 (1470)
T PLN03140 418 YQGPRDHIL 426 (1470)
T ss_pred EeCCHHHHH
Confidence 999999876
No 97
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-41 Score=376.57 Aligned_cols=206 Identities=23% Similarity=0.430 Sum_probs=166.0
Q ss_pred CcEEEEeeEEEeCCC-CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000671 593 RSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g-------- 658 (1361)
.-+.++|.+.++... ....++++|||++.+||.+|+||.+|||||-..++++|+++. -+|+|.++|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 357888888777532 345789999999999999999999999999999999999975 478998876
Q ss_pred ---------eEEEEecCCcC-CC--CCHHHHh----hcCCCCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCC
Q 000671 659 ---------SIAYVSQTSWI-QS--GSIRDNI----LYGKPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1361)
Q Consensus 659 ---------~iayv~Q~~~i-~~--~ti~eni----~~g~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 718 (1361)
+|++++|+|-- .| .||..-| ...+... +++..+.++..++.+--. .+...++
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCc
Confidence 59999999953 23 3665444 3433332 345566666666643222 2346778
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
+|||||||||.||.||..+||++|-||||.|||..++.+|.+.+..... .|-.++++|||+..+++ ||||+||.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999876654433 48899999999999987 799999999999
Q ss_pred EEecChHHHH
Q 000671 797 TQSGNYQELL 806 (1361)
Q Consensus 797 ~~~g~~~~l~ 806 (1361)
+|.|+.+++.
T Consensus 237 vE~~~t~~lF 246 (534)
T COG4172 237 VETGTTETLF 246 (534)
T ss_pred eecCcHHHHh
Confidence 9998877665
No 98
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=8.3e-41 Score=423.84 Aligned_cols=204 Identities=23% Similarity=0.309 Sum_probs=147.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCCC
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~~ 672 (1361)
..|.++|++++|+. .++|+|+||+|++|++++|+|+|||||||||++|+|+.. .| +--+|+|+|++|++.-.+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g-~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG-IPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC-CCCCCEEEEEeccCCCCCC
Confidence 46999999999964 359999999999999999999999999999999999741 13 2224578889987543344
Q ss_pred CHHHHhhcC-------------------------------------CCCC--HHHHHHHHHHhcch----------HHHh
Q 000671 673 SIRDNILYG-------------------------------------KPMD--KARYDKAIKACALD----------KDIN 703 (1361)
Q Consensus 673 ti~eni~~g-------------------------------------~~~~--~~~~~~~~~~~~l~----------~dl~ 703 (1361)
|+.|.++-. .+.+ .+++.++.+..++. .-+.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 554332110 0000 02233333322221 1111
Q ss_pred cCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHh
Q 000671 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1361)
Q Consensus 704 ~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 783 (1361)
.+...+ .....+..+||||||||++||||++.+|+++||||||++||+....++.+.+.. . ++|+|+||||++++.
T Consensus 330 ~lgl~~-~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~--~~tviivsHd~~~l~ 405 (718)
T PLN03073 330 GLSFTP-EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK-W--PKTFIVVSHAREFLN 405 (718)
T ss_pred HCCCCh-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH-c--CCEEEEEECCHHHHH
Confidence 121110 012245678999999999999999999999999999999999999998765533 2 679999999999998
Q ss_pred h-cCeEEEEeCCeEE-EecChHHHH
Q 000671 784 E-VDRILVLEGGQIT-QSGNYQELL 806 (1361)
Q Consensus 784 ~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1361)
. ||+|++|++|++. +.|+++++.
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHHHH
Confidence 7 8999999999996 688877754
No 99
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.3e-40 Score=404.12 Aligned_cols=206 Identities=28% Similarity=0.420 Sum_probs=165.0
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCC-
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ- 670 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~- 670 (1361)
.|.++|++++|+. +++|+|+|+++.+|++++|||+|||||||||++|.|+..|++|+|...+ ++||++|++...
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 4789999999953 5799999999999999999999999999999999999999999999987 799999998776
Q ss_pred CCCHHHHhhcCCCCC---HHHHHHHHH------------------H-------hcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 671 SGSIRDNILYGKPMD---KARYDKAIK------------------A-------CALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 671 ~~ti~eni~~g~~~~---~~~~~~~~~------------------~-------~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
..||+|.+.-+...- ..+++.+.. . ......+..+...+. ..+..+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~---~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE---DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc---cCchhhcCH
Confidence 559999998764311 111121111 0 111222333322221 356688999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-Eec
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSG 800 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g 800 (1361)
|||.||+|||||..+||+|||||||++||..+.+++-+.+. ..+| |+|+||||.+||.. |++|+.+++|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~--~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK--RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH--hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 99999999999999999999999999999999999865443 3456 99999999999988 7999999999885 788
Q ss_pred ChHHHHhc
Q 000671 801 NYQELLLA 808 (1361)
Q Consensus 801 ~~~~l~~~ 808 (1361)
+|+...+.
T Consensus 234 ny~~~~~~ 241 (530)
T COG0488 234 NYSSYLEQ 241 (530)
T ss_pred CHHHHHHH
Confidence 88887643
No 100
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=5.9e-40 Score=416.97 Aligned_cols=459 Identities=9% Similarity=-0.032 Sum_probs=350.5
Q ss_pred HHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCchh------HHHHHHHHHHHHHHHHHHHH
Q 000671 887 KPFMDYLNVSKG---MSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITSG------ILIGVYAGVSTASAVFVYFR 955 (1361)
Q Consensus 887 ~~y~~y~~~~~g---~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~~------~~l~iy~~l~~~~~i~~~~~ 955 (1361)
..+++|+++.+. +..+++.+++.++...+.+..+++.+..++.. ..... .++.+++++.++..+..++.
T Consensus 80 ~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~ 159 (659)
T TIGR00954 80 DFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLL 159 (659)
T ss_pred HHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566654443 23444555555666677778888877766531 11111 12223344445556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 000671 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF-VT 1034 (1361)
Q Consensus 956 ~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~-~~ 1034 (1361)
..+......+..+++|++.+++....++.|||+ ++|++++|+++|++.+...+...+..++..++.+++.++++.. .+
T Consensus 160 ~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~ 238 (659)
T TIGR00954 160 KELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALG 238 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777888888999999999988999999997 8899999999999999999999999999999998888887775 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHH
Q 000671 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1361)
Q Consensus 1035 ~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~ 1114 (1361)
|.+.++++...++..++.+++.+..+++.+..+...+...+.++|.++|+++||+|+.|+.+.+++.+..++..+.....
T Consensus 239 ~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~ 318 (659)
T TIGR00954 239 SVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLI 318 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888899999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHH-h-hhhc----CCccCHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 000671 1115 NGVMEWLILRVEALQNLT--LFTAALF-L-VLIP----RGYVAPGLV-GLSLSY---AFTLTGTQVFLSRWYCYLANYII 1182 (1361)
Q Consensus 1115 ~~~~~wl~~rl~~l~~l~--~~~~~~~-~-vl~~----~g~is~g~~-gl~l~y---a~~l~~~l~~l~~~~~~le~~~~ 1182 (1361)
.....++....+++.... .+...+. . ++.. .|.++.|.. +.+++| ..++..++..+...+.+++...+
T Consensus 319 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~ 398 (659)
T TIGR00954 319 IKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAG 398 (659)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 878888877777665421 1111111 1 2222 267888764 335555 56778999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCC------CCCCCC--------C------CCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeC
Q 000671 1183 SVERIKQFMHIPPEPPA------IVEDKR--------P------PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSE 1242 (1361)
Q Consensus 1183 sveRi~e~~~~~~E~~~------~~~~~~--------~------~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~ 1242 (1361)
+.+|+.++++.++|... ..++.. + .......|.|+|+||+++|+++ +++|+|+||+|++
T Consensus 399 ~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~ 477 (659)
T TIGR00954 399 FTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPS 477 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECC
Confidence 99999999975433110 000000 0 0000134679999999999644 3599999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCC-C-------
Q 000671 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP-L------- 1314 (1361)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP-~------- 1314 (1361)
||++||||++|||||||+++|.|+++|++|+|.+|+ |+++++|||||.+|++|+|+||.. .
T Consensus 478 Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 546 (659)
T TIGR00954 478 GNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKR 546 (659)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhc
Confidence 999999999999999999999999999999999875 789999999999999999999962 1
Q ss_pred CCCCHHHHHHHHhhCcCC--CCCCcccccCCchhhhhhcccccccee
Q 000671 1315 GLYSDDEIWKVSQLTPNS--RNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1315 ~~~sDeeI~~AL~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
.+.++++++++++.++-. .+...|.|+... .+-++|.||||++.
T Consensus 547 ~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~-~~~~LSgGqkQRl~ 592 (659)
T TIGR00954 547 RGLSDKDLEQILDNVQLTHILEREGGWSAVQD-WMDVLSGGEKQRIA 592 (659)
T ss_pred cCCCHHHHHHHHHHcCCHHHHhhcCCcccccc-cccCCCHHHHHHHH
Confidence 236789999999998532 223445666654 45689999999975
No 101
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.4e-41 Score=383.44 Aligned_cols=222 Identities=27% Similarity=0.364 Sum_probs=202.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.|+++|++++|+.+ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| .|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999743 2469999999999999999999999999999999999998 799999987 48
Q ss_pred EEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 661 ayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
+|+||+|+++++|++||+....++.++++.++++.+++...++.+|++.+|.+++.|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999974445677888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHHH
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 818 (1361)
+||||||++||+.+.+.+.+.+. ...+++|+|+|||+++.+..||+|++|++|++++.|+++++.+++..|.+++..
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~-~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLK-QAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHH-HhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 99999999999999998876554 345689999999999999889999999999999999999999877777777654
No 102
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-42 Score=372.97 Aligned_cols=204 Identities=27% Similarity=0.396 Sum_probs=177.9
Q ss_pred EEEEeeEEEeCCC--CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~--~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
|+++++++.|... ....+|+|+||+|++||+.+|+|.||+|||||+++|.++.+|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999863 235689999999999999999999999999999999999999999999998
Q ss_pred --eEEEEecCCcCCC-CCHHHHhhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 --SIAYVSQTSWIQS-GSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 --~iayv~Q~~~i~~-~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
+||+++|++.+++ .||.|||.|..+. + ++|..+.++..+|.+..+ ..+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~-----------~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD-----------RYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------cCchhcCcchhhHH
Confidence 4999999998876 7999999997542 2 234555666666664333 56789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHH
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
+|||||+.+|+|+|.|||||||||++.+.|.+.+.+... -|-|+++|||.++.++. |||+.||++|+++|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999887655433 48999999999999987 8999999999999999999998
Q ss_pred hcC
Q 000671 807 LAG 809 (1361)
Q Consensus 807 ~~~ 809 (1361)
.++
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 765
No 103
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-42 Score=361.91 Aligned_cols=203 Identities=30% Similarity=0.406 Sum_probs=176.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
|+++|+++.|.+ ..+++|+||+|++||+++++|||||||||+|++|.++++|++|+|.++| +||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 789999999984 4699999999999999999999999999999999999999999999998 599
Q ss_pred EEecCCcC-CCCCHHHHhhcCC---CCCH----HHHHHHHHHhcchH-HHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 662 YVSQTSWI-QSGSIRDNILYGK---PMDK----ARYDKAIKACALDK-DINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 662 yv~Q~~~i-~~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~-dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
||-|+.-+ ++.||.|||.+-- .+++ ++.++.++..+|++ ++. .+.+.+|||||+|||.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~----------~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYA----------DRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHh----------hcCchhcCcchhhHHHHHH
Confidence 99999765 5779999998742 2444 45667777778864 232 2567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHH-hhcCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
||+.+|+|+|+||||+||||-+++.+-+++..... -++|+|+||||+++. +-+|||.+|++|+|++.++|++++.+..
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999998777665443 389999999999875 5599999999999999999999997653
No 104
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=365.26 Aligned_cols=190 Identities=33% Similarity=0.453 Sum_probs=166.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEec
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------~iayv~Q 665 (1361)
.+.+++++.+|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++| .+|||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5789999999985 4699999999999999999999999999999999999999999999987 5899999
Q ss_pred CCcC-CCCCHHHHhhcCCCCC-------HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 666 TSWI-QSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 666 ~~~i-~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
++-+ +..||+||+.||.+.. .++.++.++.++|...-+ ..+.+|||||||||+||||++.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~-----------~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFED-----------KYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhh-----------cCccccChHHHHHHHHHHHHhcC
Confidence 9765 5789999999986531 346777888888876554 45678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHh-hcCeEEEEeC--CeEE
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEG--GQIT 797 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~--G~i~ 797 (1361)
|+++||||||+|||+.|+.++.+.+.+.+. .++|+++||||+++.- -+|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999888877654 4799999999998854 5899999998 4453
No 105
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-41 Score=365.11 Aligned_cols=201 Identities=32% Similarity=0.528 Sum_probs=176.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------~iay 662 (1361)
..|+++|++++|+++ ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 358999999999854 499999999999999999999999999999999999999999999875 5999
Q ss_pred EecC---CcCCCCCHHHHhhcCCCC-----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 663 VSQT---SWIQSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 663 v~Q~---~~i~~~ti~eni~~g~~~-----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
|||. .|-|..||+|-+..|... |.+..+++++..++.+..+ .+..+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHHHH
Confidence 9996 467899999999987432 3477888999998874332 55678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
-|||||+++||+++|||||+|+|+++++.+++.+.+...+|+||++||||++.+.. +|+|+.|+ +++...|++++...
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999999999999999999999998766665669999999999998765 89999985 57888999999875
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 4
No 106
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=9e-41 Score=366.80 Aligned_cols=201 Identities=26% Similarity=0.412 Sum_probs=177.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++|+|+. +++++|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999984 4799999999999999999999999999999999999999999999998 59
Q ss_pred EEEecCCcC-CCCCHHHHhhcCCC-----------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 661 AYVSQTSWI-QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 661 ayv~Q~~~i-~~~ti~eni~~g~~-----------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
||+||++.. ++.||+|-+.+|+. .|.+...++++.+++.+..+ +...+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-----------r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-----------RPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-----------CcccccChhHHHHH
Confidence 999999754 67799999999852 13345677788888876543 45678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHH-hhcCeEEEEeCCeEEEecChHHHH
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
.|||||+++|++++||||||+||...+-++++.+.+.. .+|+|+|+|+||++.. +.||++++|++|+++.+|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999998877665 4589999999999985 569999999999999999999987
Q ss_pred hc
Q 000671 807 LA 808 (1361)
Q Consensus 807 ~~ 808 (1361)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 53
No 107
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-41 Score=346.44 Aligned_cols=206 Identities=27% Similarity=0.400 Sum_probs=180.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCC-----cEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~-----G~v~~~g--------- 658 (1361)
..++++|+++.|.. ..+|+|||++|++++++|++||+||||||||+++.++.+..+ |+|.++|
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 46899999999984 459999999999999999999999999999999999988765 8998887
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
+||+|+|.|.-|..||+|||.||... . ++..++.++.++|.+..+. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 49999999999999999999998432 1 3457777888888876653 23467888999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||+|||||+.-+|+|+|||||||||||.+..+|- +++..+.++-|+|+|||+++...+ +|+...+.+|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIE-eLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIE-ELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHH-HHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 9999999999999999999999999999999974 566666788899999999998877 69999999999999999999
Q ss_pred HHhcC
Q 000671 805 LLLAG 809 (1361)
Q Consensus 805 l~~~~ 809 (1361)
+..+.
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87653
No 108
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-40 Score=376.82 Aligned_cols=203 Identities=32% Similarity=0.423 Sum_probs=180.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iay 662 (1361)
.|+++|++++|.+.. +++|+|++|++||+++++|||||||||||++|+|+.+|++|+|.++| .||+
T Consensus 3 ~i~l~~v~K~yg~~~---~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCce---eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 589999999997531 89999999999999999999999999999999999999999999988 4999
Q ss_pred EecCCcC-CCCCHHHHhhcCCCCC-------HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWI-QSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i-~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
|+|+.-+ +.+||+|||.||.... +++++++.+..+++..++ .++.+||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHHHHHHHH
Confidence 9999766 5679999999986542 567888888899988877 46678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHh-hcCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
.++|+++|||||+|+||++.+..+..++.+... -+.|+|+||||..++. -+|||+||++|+|.+.|++.|+.++..
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 999999999999999999999998877665443 3789999999987765 589999999999999999999986543
No 109
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1e-39 Score=407.39 Aligned_cols=179 Identities=23% Similarity=0.335 Sum_probs=148.8
Q ss_pred eeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEE-----------EcC---------
Q 000671 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG--------- 658 (1361)
Q Consensus 599 ~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~-----------~~g--------- 658 (1361)
+.++.|..+ ..+|++++ .+++||+++|+||||||||||+++|+|+++|++|+|. ++|
T Consensus 78 ~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 478888643 36899999 9999999999999999999999999999999999996 544
Q ss_pred ------eEEEEec----CCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 ------SIAYVSQ----TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 ------~iayv~Q----~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
.++|.+| .|.++.+|++||+.+.. ..++.+++++..++....+ .+..+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENILD-----------RDISELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 2455554 56667789999997521 2345677777777754432 46678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCC
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1361)
+||||++++|++|+||||||+||+....++++.+..... |+|+|++||+++.+.. +|+|++|++|
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999876655545 8999999999999876 7999999763
No 110
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-40 Score=378.16 Aligned_cols=204 Identities=30% Similarity=0.435 Sum_probs=180.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~ia 661 (1361)
..++++|++.+|. +..+++|+||+|++||+++++|||||||||+|++|+|+..|++|+|.++| .|+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999998 35799999999999999999999999999999999999999999999998 499
Q ss_pred EEecCCcCC-CCCHHHHhhcCCCC----C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 662 YVSQTSWIQ-SGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 662 yv~Q~~~i~-~~ti~eni~~g~~~----~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
+|+|+.-+| +.||+|||.||... . ++++.++++..+|....+ +++.+|||||||||+|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-----------R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-----------RKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-----------hChhhhChHHHHHHHHHH
Confidence 999997665 67999999999761 2 237778888888876443 677899999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchH-HhhcCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
||..+|+++|||||+||||.+.++++-.++.+... .|.|.|+||||.+. +..+|||+||++|+|.+.|+++|+.....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 99999999999999999999999998877766543 48999999999976 56689999999999999999999987653
No 111
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.8e-40 Score=345.27 Aligned_cols=205 Identities=27% Similarity=0.405 Sum_probs=177.5
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
+..|+++++++++.+ +.+++|+||+|++||+++|+|+|||||||||++|.|+++|++|+|.+.|
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 457999999999974 4699999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEecCCcCCC-CCHHHHhhcCC----CCCHHHH----HHHHHHhcchHH-HhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ---SIAYVSQTSWIQS-GSIRDNILYGK----PMDKARY----DKAIKACALDKD-INNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ---~iayv~Q~~~i~~-~ti~eni~~g~----~~~~~~~----~~~~~~~~l~~d-l~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
++|+++|+.-+|. .||+||+.|.. ..+++.+ ...+++++|..+ .+. .+.+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----------~PsELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL-----------YPSELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh-----------CchhhcchHH
Confidence 4999999988774 69999999953 2444443 345778888877 454 4568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc--CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
+|++||||+..||+++++|||||||||.+...+ ++++..+. -+-|+|+||||++.+.. ||+|+++.||+|+..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999999875 45554433 37899999999998876 799999999999999999
Q ss_pred HHHHhcCch
Q 000671 803 QELLLAGTA 811 (1361)
Q Consensus 803 ~~l~~~~~~ 811 (1361)
+|+.+.+..
T Consensus 231 ~el~~sd~P 239 (263)
T COG1127 231 EELLASDDP 239 (263)
T ss_pred HHHHhCCCH
Confidence 999886653
No 112
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-40 Score=357.08 Aligned_cols=202 Identities=31% Similarity=0.431 Sum_probs=176.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.|.++|.+..|+. .++++|||++|+.||++++.|||||||||||++|+|+..|++|.|.++| +
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4778888888874 4689999999999999999999999999999999999999999999987 4
Q ss_pred EEEEecCCcC-CCCCHHHHhhcCCCC---------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 660 IAYVSQTSWI-QSGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 660 iayv~Q~~~i-~~~ti~eni~~g~~~---------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
||||+|+.-+ +.+||.|||.||.+. .+.+..+.++.|+|+.--+ ..+..|||||||||+
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHHHH
Confidence 9999999766 467999999999732 2456777788888864433 467799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHh-hcCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||+..+|++||||||++|||++..+.+-..+.+...+ |.|+++||||.++.. .||||++|++|+|.+.|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999987766655444 889999999998865 589999999999999999999976
Q ss_pred cC
Q 000671 808 AG 809 (1361)
Q Consensus 808 ~~ 809 (1361)
..
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 54
No 113
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-38 Score=364.31 Aligned_cols=220 Identities=40% Similarity=0.707 Sum_probs=197.3
Q ss_pred cCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCc
Q 000671 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668 (1361)
Q Consensus 589 ~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~ 668 (1361)
+.....++++|+++.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.|+|++|+++
T Consensus 34 ~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~ 108 (282)
T cd03291 34 SSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSW 108 (282)
T ss_pred CCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccc
Confidence 3455679999999962 35999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000671 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1361)
Q Consensus 669 i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1361)
+++.|++||+.++......++.+.++++++.+.++.++.+.++.+++++.+||||||||++||||++++|+++||||||+
T Consensus 109 l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~ 188 (282)
T cd03291 109 IMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (282)
T ss_pred ccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 98899999999876555556777888889988899999998888999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHH
Q 000671 749 AVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1361)
Q Consensus 749 alD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 813 (1361)
+||+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|++++.|+++++......+.
T Consensus 189 gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 253 (282)
T cd03291 189 YLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS 253 (282)
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHH
Confidence 99999999888766554456889999999999998899999999999999999999876544333
No 114
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.5e-39 Score=348.72 Aligned_cols=193 Identities=28% Similarity=0.412 Sum_probs=165.0
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|++..|..+. ..++|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56889999887542 24689999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCc-CCCCCHHHHhhcC----CCC---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 --SIAYVSQTSW-IQSGSIRDNILYG----KPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 --~iayv~Q~~~-i~~~ti~eni~~g----~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
.||||+|+.. +++.|++|||.++ ... ..++.++.++..+|.+.... .++.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~----------~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK----------KKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhcc----------CCchhcCHHHHHHH
Confidence 3999999965 5788999999853 211 13455666666677654431 45779999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEE
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1361)
|||||++.+|++++.||||.+||.++++.+++.+..... .|+|+|+||||.+....|||++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999987766544 489999999999999999999999999954
No 115
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=9.5e-39 Score=358.68 Aligned_cols=219 Identities=31% Similarity=0.469 Sum_probs=193.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|+++.|+.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999643 24699999999999999999999999999999999999999999999987 389
Q ss_pred EEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 662 yv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
|++|++++++.|++||+.++.. ...++..+.++..++.+.++.+|.|..+..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999988999999998653 344555666777788888888888888878889999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHH
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 815 (1361)
+||||||++||+...+.+.+.+... .+|+|+|++||+++.+..||++++|++|++++.|+++++.++.+.+..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 9999999999999999988766544 4689999999999999889999999999999999999988776555543
No 116
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.8e-39 Score=351.98 Aligned_cols=201 Identities=56% Similarity=0.983 Sum_probs=183.9
Q ss_pred EEEEeeEEEeCCCCC--CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCCC
Q 000671 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~~ 672 (1361)
++++|+++.|++... .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+|+|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999975321 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q 000671 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1361)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~ 752 (1361)
|++||+.++..+++++..++.+.+++.+.+..+|.|.+|.+++++.+||||||||++||||++++|++++|||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999877766677888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEccCchHHhhcCeEEEEeCCe
Q 000671 753 HTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1361)
Q Consensus 753 ~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1361)
+..+.+++.++... .+++|+|++||+++.+..+|++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999887665433 45799999999999988899999999985
No 117
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-39 Score=340.46 Aligned_cols=200 Identities=30% Similarity=0.436 Sum_probs=173.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
.|+++|++..|+.+ +.+|+||||+|++||+++|+|++||||||||++|.|+.+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 58999999999853 5799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEecCCcC-CCCCHHHHhhcCCC------------CCHHH---HHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 -SIAYVSQTSWI-QSGSIRDNILYGKP------------MDKAR---YDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 -~iayv~Q~~~i-~~~ti~eni~~g~~------------~~~~~---~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
+|||++|++.+ ...||.+|++.|+- +.++. .-++++..++.+... .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 49999999875 67899999987641 23333 334555556655433 5678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEe
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1361)
|||+|||+|||||+++|+++|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|++++..+ ||||+-|++|+|++.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999998877654 468999999999999765 899999999999999
Q ss_pred cChHHHH
Q 000671 800 GNYQELL 806 (1361)
Q Consensus 800 g~~~~l~ 806 (1361)
|+.+|+.
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999864
No 118
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.7e-39 Score=323.09 Aligned_cols=199 Identities=29% Similarity=0.437 Sum_probs=175.0
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
+.++++.|+|...+ =..+++|++||+++|+||+||||||||++|.|+..|.+|+|.++| .++++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 56788999997532 357899999999999999999999999999999999999999998 39999
Q ss_pred ecCCcCCC-CCHHHHhhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQS-GSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~~-~ti~eni~~g~~-------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|+..+|. .||.+||.+|.. .+.++++.++...+|...++.+|. +|||||||||+|||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 99999886 499999999853 345678888899999988887764 79999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
++.+|+|||||||||||.-+.++...+.... .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999998876555443 357899999999998876 8999999999999999999987543
No 119
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-38 Score=351.32 Aligned_cols=202 Identities=28% Similarity=0.482 Sum_probs=181.0
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++|+|+++ .++|+|+|++|++||.++|+|+||||||||++++.|+++|++|.|.++| +
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999876 5799999999999999999999999999999999999999999998876 3
Q ss_pred EEEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
+|||+|+| .++..||.|.+.||.. .+ +++.+++++.|++....+ ..+.+|||||||||+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-----------r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-----------RPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-----------CCccccCCcceeeHHh
Confidence 99999999 5789999999999853 33 356778888899887654 4567999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|.+|..+|++++||||||+||+...+.+.+.+.+...+ |+|+|++|||++.+.. ||++++|++|+++.+|+++++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999998877666555 6899999999999877 999999999999999999888754
No 120
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.6e-38 Score=354.25 Aligned_cols=215 Identities=32% Similarity=0.503 Sum_probs=190.4
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|+++.|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753335699999999999999999999999999999999999999999999877 399
Q ss_pred EEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 662 yv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
|++|++.+++.|++||+.++.. ...++..+.++.+++.+.++.+|.|..+..+.+..+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998888899999998754 334556667777888888888988888888888999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
+||||||++||+...+.+.+.+.... +|+|+|++||+++.+..||++++|++|++++.|+.+++.....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 229 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG 229 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcCh
Confidence 99999999999999999887665544 7899999999999988899999999999999999888865443
No 121
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=357.60 Aligned_cols=192 Identities=27% Similarity=0.421 Sum_probs=171.0
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~------------- 659 (1361)
..+++++.+..|+ ...+++||||+|++||+.|++|.||+|||||+++|.|.++|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999998 356899999999999999999999999999999999999999999999983
Q ss_pred -EEEEecCCcC-CCCCHHHHhhcCCCC------C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 660 -IAYVSQTSWI-QSGSIRDNILYGKPM------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 660 -iayv~Q~~~i-~~~ti~eni~~g~~~------~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
||+|.|++-+ .+.||.|||..|.+- + .++.++..+..++.-|.+ ++..+||=|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcchhHH
Confidence 9999999865 677999999998752 2 345666677777765554 5677899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|.|-+|||++|+++|||||||-|-|...+++|+.+.+...+|+|||++||.++++.. ||++-||+.|+++.
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999999999877777789999999999999876 89999999999763
No 122
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-38 Score=336.35 Aligned_cols=205 Identities=25% Similarity=0.416 Sum_probs=177.4
Q ss_pred cEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
.++++|.++.|+... ..++++||||+|.+||.++|+|++|||||||.++|+|+.+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 578999999998642 12489999999999999999999999999999999999999999999988
Q ss_pred eEEEEecCCc--C-CCCCHHHHhhcCC-----CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSW--I-QSGSIRDNILYGK-----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~--i-~~~ti~eni~~g~-----~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.|-+|+|+|. + +..||++-|.-+. +..+++..++++..+|.+.... +++.+|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~----------R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD----------RRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHh----------cCchhcChhHHHHHHH
Confidence 3889999985 2 5569998876432 2234567888999998766542 5677899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||||..+|+++|+|||||+||+.++..|++.+.+... .+-|.|+||||+..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999987665433 46799999999999987 899999999999999999998865
No 123
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-38 Score=350.83 Aligned_cols=211 Identities=30% Similarity=0.504 Sum_probs=190.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+.+ .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 58899999999632 3589999999999999999999999999999999999999999999876 38
Q ss_pred EEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000671 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 661 ayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1361)
+|++|++++++.|++||+.++.+ ...++..+.++.+++...++.+|.|..+.++.+..+||||||||++||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999888899999998754 34566777888889998899999888888889999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++||||||++||+.+.+.+.+.+... .+++|+|++||+++.++.||++++|++|++++.|+.+++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999988766544 46899999999999988899999999999999999888764
No 124
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9.3e-38 Score=354.48 Aligned_cols=222 Identities=27% Similarity=0.393 Sum_probs=196.9
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
.+.++++|++++|+.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4579999999999753 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 659 ~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
.++|++|+|++++.|++||+........+++.++++..++.+.++.+|.|.++.+++++.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999765444556677888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcC-chHHHH
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG-TAFEQL 815 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~ 815 (1361)
++++|||||++||+++.+.+++.+.. ..+++|+|++||+++.+..||+|++|++|++++.|+++++.+.. +.+.++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999888765543 45689999999999999889999999999999999999987653 234443
No 125
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-38 Score=350.87 Aligned_cols=214 Identities=32% Similarity=0.540 Sum_probs=190.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999643 23689999999999999999999999999999999999999999999876 389
Q ss_pred EEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 662 yv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
|++|++++++.|++||+.++.. ...+.+.+.++.+.+.+.++.++.|..+..+.++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988999999998754 345567777788888888999988888888889999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
+||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+..||++++|++|++++.|+++++.....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 9999999999999999987765443 46899999999999998899999999999999999988876543
No 126
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-38 Score=350.31 Aligned_cols=215 Identities=33% Similarity=0.560 Sum_probs=191.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|++++|+.+ .++++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999642 3589999999999999999999999999999999999999999999987 289
Q ss_pred EEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 662 yv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
|++|++++++.|++||+.++.. ...+...+.++.+++.+.++.++.|.++.++.++.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998753 344556677788889888899999989988899999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchH
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 812 (1361)
+||||||++||+++.+.+.+.+.... +++|+|++||+++.+..||++++|++|++++.|+.+++......+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~ 229 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLY 229 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHH
Confidence 99999999999999999887665443 489999999999999889999999999999999998887654443
No 127
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.8e-38 Score=369.08 Aligned_cols=203 Identities=25% Similarity=0.355 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
|+++|++++|+.+. ..++|+|+||+|++||+++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996422 24699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCC-CCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 -~iayv~Q~~~i~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
+|||++|++.++ +.|++||+.++.. .++ ++..++++..+|.+..+ ..+.+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 389999998876 5799999988532 222 34455666666654332 566799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++|||||||+||+.+.+.+.+.+.+...+ |.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999999999999998766654443 8999999999999876 89999999999999999999976
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
No 128
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-38 Score=370.18 Aligned_cols=203 Identities=31% Similarity=0.449 Sum_probs=176.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iay 662 (1361)
.++++|++++|+. +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 3789999999942 24699999999999999999999999999999999999999999999987 3999
Q ss_pred EecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
|+|++.++ +.||+|||.|+.. .+ .++.+++++.++|....+ .++.+|||||||||+||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-----------RKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 99999887 5799999998743 22 234567777777765444 45679999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
+.+|+++|||||||+||+.+++.+.+.+.+...+ |.|+|+||||++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999998876654443 8999999999998754 8999999999999999999997654
No 129
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-37 Score=345.96 Aligned_cols=206 Identities=28% Similarity=0.436 Sum_probs=187.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+.. +.++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 47899999999743 24699999999999999999999999999999999999999999999876 38
Q ss_pred EEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 661 ayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
+|++|++.+++.|++||+.+......++..+.++..++.+.+..++.|..+..++++.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999988999999987666667778888899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecC
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1361)
++|||||++||+.+.+.+.+.+.+ ..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999998776554 345789999999999998899999999999998775
No 130
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-37 Score=361.96 Aligned_cols=193 Identities=27% Similarity=0.390 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~------------- 659 (1361)
.-++++|++++|+. .++|+|+||++.+||+++++|.||+|||||+|.|.|.++|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 35889999999985 47999999999999999999999999999999999999999999999983
Q ss_pred -EEEEecCCcC-CCCCHHHHhhcCCCC-------CHHH----HHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 660 -IAYVSQTSWI-QSGSIRDNILYGKPM-------DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 660 -iayv~Q~~~i-~~~ti~eni~~g~~~-------~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
|+.|.|+..+ ++.||.|||-+|++. |..+ .+++++..++..| ...+..+||+||||
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-----------~~~~v~~LsiaqrQ 152 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-----------PDTLVGDLSIAQRQ 152 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-----------hhhhhhhCCHHHHH
Confidence 9999999765 788999999888652 2222 2233333333211 23566789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEe
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1361)
-|+||||+..++++++||||||+|+.+..+++|+.+.+...+|.++|+|||+++++.. ||||.||+||+.+..
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 9999999999999999999999999999999998877777789999999999999876 899999999998854
No 131
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.5e-38 Score=320.56 Aligned_cols=193 Identities=24% Similarity=0.398 Sum_probs=173.8
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
|+|+|++..|+.. .++|+|+||+|++||++-|+|||||||||||++|.++.+|+.|+|.++|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999975 5799999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCc-CCCCCHHHHhhcCCCC-------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSW-IQSGSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~-i~~~ti~eni~~g~~~-------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
+||+|+|+.- +.+.||.||+.|.... -+++..++++..+|......+|. .|||||||||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 5999999975 5788999999996432 24567788999999988887764 799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhc-CeEEEEeCCeEEEec
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~~g 800 (1361)
|||+..+|+++|-||||-+|||..+..|++...+....|.||+++|||.+.+... .+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999987666667899999999999999886 899999999998643
No 132
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=361.81 Aligned_cols=208 Identities=23% Similarity=0.387 Sum_probs=174.7
Q ss_pred CCCcEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000671 591 SDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------- 658 (1361)
.+..|+++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345699999999997432 24699999999999999999999999999999999999999999998864
Q ss_pred -------------------eEEEEecCC--cCCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCC
Q 000671 659 -------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDL 710 (1361)
Q Consensus 659 -------------------~iayv~Q~~--~i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~ 710 (1361)
.|+||+|+| .+++.|++|||.|+.. .+. ++..+.++.+++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------- 168 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDS--------- 168 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChh---------
Confidence 279999998 6788899999998732 222 233444555554322
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHh-hcCeEE
Q 000671 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRIL 789 (1361)
Q Consensus 711 t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~ 789 (1361)
..++++.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||+|+
T Consensus 169 -~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 169 -YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred -HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 134678899999999999999999999999999999999999999998766554456899999999999875 599999
Q ss_pred EEeCCeEEEecChHHHHhc
Q 000671 790 VLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 790 ~l~~G~i~~~g~~~~l~~~ 808 (1361)
+|++|++++.|+++++...
T Consensus 248 vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999998754
No 133
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=364.96 Aligned_cols=203 Identities=27% Similarity=0.356 Sum_probs=174.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~ia 661 (1361)
..++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| +||
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 36899999999963 4589999999999999999999999999999999999999999999987 499
Q ss_pred EEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 662 YVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 662 yv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
||+|++.++ +.||+|||.|+.. .+ +++.+++++..++....+ .++.+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-----------r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHH
Confidence 999999876 5699999999743 22 234556666666653322 5677999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
++.+|+++|||||||+||+..++.+.+.+.....+ ++|+|+||||.+.+.. ||+|++|++|+|++.|+++++..+.
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999988766554433 8999999999998755 8999999999999999999997654
No 134
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=348.88 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 3699999999999999999999999999999999999999999998876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
.++|++|++.+++ .|++||+.++.. .+. ++..++++.+++.... ..+..+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 2899999987765 599999987522 222 2344556666554332 2456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999876655444 48999999999998876 89999999999999999988764
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
No 135
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3e-37 Score=342.59 Aligned_cols=205 Identities=39% Similarity=0.607 Sum_probs=183.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|+++.|+.. ..++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 47899999999642 24699999999999999999999999999999999999999999999877 38
Q ss_pred EEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000671 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 661 ayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1361)
+|++|++++++.|++||+.++.. .++++..+.++.+++.+.++..|.|..|.+.++..+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999998888899999988644 34556778888999998899999999999888999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEec
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 800 (1361)
++||||||++||+.+.+.+++.+... .+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQL-LGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999988766544 3348999999999988779999999999998654
No 136
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=9.8e-38 Score=366.24 Aligned_cols=189 Identities=26% Similarity=0.361 Sum_probs=164.3
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEecCCcCCC-
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS- 671 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------------~iayv~Q~~~i~~- 671 (1361)
+++++|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| .++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 4689999999999999999999999999999999999999999999877 4999999999876
Q ss_pred CCHHHHhhcCCCC---CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000671 672 GSIRDNILYGKPM---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1361)
Q Consensus 672 ~ti~eni~~g~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1361)
.||+|||.|+.++ +. ++..++++.++|.... ++++.+|||||||||+||||++.+|+++|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999999986432 22 3345556666664433 3667799999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 745 DPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 745 ep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
|||||||+.+++.+.+.+..... .++|+|+||||++++.. ||+|++|++|++++.|+++++..+.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999999999988776544 48999999999998655 8999999999999999999998653
No 137
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=339.26 Aligned_cols=396 Identities=16% Similarity=0.206 Sum_probs=286.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHH
Q 000671 942 AGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021 (1361)
Q Consensus 942 ~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~ 1021 (1361)
..+.++.+++.++|+.++.+.+.+.-+.+....|...+++|..--...+....+ +|.+++..++...-...+...-
T Consensus 70 l~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaP 145 (580)
T COG4618 70 LGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAP 145 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCc
Confidence 344566778889999999999999999999999999988877654333333443 4888888776542221111111
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHH
Q 000671 1022 ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1361)
Q Consensus 1022 ~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~ 1101 (1361)
..-.-+++++.+.|++.++++.-.++.+.+..+--...|+--+..++..+.-.++..-+..+..+|+|.|...+..++..
T Consensus 146 W~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~ 225 (580)
T COG4618 146 WMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWG 225 (580)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHH
Confidence 12223345555666665554433333332222222233333334444455567788889999999999998766555544
Q ss_pred HHH----HHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1102 KLV----DIDASLFFHTNGV---MEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWY 1174 (1361)
Q Consensus 1102 ~~~----d~~~~~~~~~~~~---~~wl~~rl~~l~~l~~~~~~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~ 1174 (1361)
+.. +.+.++....... .+-+-..++ ..+.++.++++.+|.+|+|.....--.+.....|+-..+..|
T Consensus 226 ~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQ------s~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~W 299 (580)
T COG4618 226 RFNAAYLSAQERASDRNGAFGALSRALRMALQ------SAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANW 299 (580)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHH
Confidence 443 3333333222221 122211111 123344467778999999988776666667778999999999
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCC
Q 000671 1175 CYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254 (1361)
Q Consensus 1175 ~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGS 1254 (1361)
.++-.+..|-.|+.+.++..++... .-+.|. .+|.+..|++++.=++...++|+||||+++|||-+||||||||
T Consensus 300 kq~~~Ar~s~~Rl~~lL~~~p~~~~---~m~LP~---P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgS 373 (580)
T COG4618 300 KQFVAARQSYKRLNELLAELPAAAE---RMPLPA---PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGS 373 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccC---CCCCCC---CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCc
Confidence 9999999999999999986555432 112222 3799999999986555556899999999999999999999999
Q ss_pred cHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhC----
Q 000671 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLT---- 1329 (1361)
Q Consensus 1255 GKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~---- 1329 (1361)
|||||.++|.+.+.|.+|+|.+||-|+++.+.++|=++|||.|||--||+|||+|||.-|+ +.++|.|.+|.+.+
T Consensus 374 GKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHe 453 (580)
T COG4618 374 GKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHE 453 (580)
T ss_pred cHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHH
Confidence 9999999999999999999999999999999999999999999999999999999999888 67788899999998
Q ss_pred -----cCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1330 -----PNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1330 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|++++|.| +++|..+|.||||++.
T Consensus 454 lIl~lP~GYdT~i------G~~G~~LSgGQRQRIa 482 (580)
T COG4618 454 LILRLPQGYDTRI------GEGGATLSGGQRQRIA 482 (580)
T ss_pred HHHhCcCCccCcc------CCCCCCCCchHHHHHH
Confidence 46666666 5678889999999874
No 138
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-37 Score=355.86 Aligned_cols=204 Identities=21% Similarity=0.395 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCC--CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
|+++|++|+|+.+.. +++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 689999999974321 3599999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ---~iayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|+| .+++.|+.||+.|+.. .+ ++++.++++..++..++. .+.+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW----------EKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc----------cCCcccCCHHHHH
Confidence 279999998 6778899999998742 22 234566666666643322 2567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999887655444468999999999998865 999999999999999999998
Q ss_pred Hhc
Q 000671 806 LLA 808 (1361)
Q Consensus 806 ~~~ 808 (1361)
..+
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 653
No 139
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-37 Score=354.26 Aligned_cols=204 Identities=25% Similarity=0.392 Sum_probs=175.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48899999999753234699999999999999999999999999999999999999999999887 38
Q ss_pred EEEecCCc--CCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~~--i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+|. ++..||+|||.|+.. .+ .++..++++.+++....+ ..+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 567899999998732 22 245667777777765443 45678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999988766554443 8999999999999877999999999999999999988654
No 140
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-37 Score=355.78 Aligned_cols=204 Identities=23% Similarity=0.375 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 14699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEecCC--cCCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ---~iayv~Q~~--~i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.|+|++|+| .+++.|++|||.|+.. .+. ++.+++++.++|..++. ..++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 289999998 5778899999998632 222 34566777777754332 2467789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... .|.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999998876655434 38999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
No 141
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.1e-37 Score=364.26 Aligned_cols=202 Identities=30% Similarity=0.397 Sum_probs=175.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iay 662 (1361)
.++++|++++|+. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .+||
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 5899999999974 3589999999999999999999999999999999999999999999987 3999
Q ss_pred EecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
|+|++-++ ..||+|||.|+.. .+ .++.+++++..+|.+.++ .++.+|||||||||+||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 99999876 5799999998743 22 235566666666654333 56789999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
+.+|+++|||||||+||+..++++.+.+.+...+ +.|+|+||||.+.+.. ||+|++|++|++++.|+++++.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999998776654443 8999999999998755 8999999999999999999998754
No 142
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.3e-37 Score=363.29 Aligned_cols=204 Identities=27% Similarity=0.365 Sum_probs=176.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eE
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~i 660 (1361)
...++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .+
T Consensus 12 ~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 12 SPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 345899999999974 3589999999999999999999999999999999999999999999987 39
Q ss_pred EEEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
||++|++.++ ..||+|||.|+.. .+ .++.+++++..++...++ .++.+|||||||||+|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-----------RKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHHHH
Confidence 9999998776 5699999998743 22 234566677777765444 456789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHh-hcCeEEEEeCCeEEEecChHHHHhcC
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||+.+|+++|||||||+||++.++.+.+.+..... .|.|+|+||||.+.+. .+|+|++|++|+|++.|+++++..+.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999998877665444 3899999999999865 48999999999999999999998754
No 143
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=354.36 Aligned_cols=206 Identities=26% Similarity=0.412 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997532 14699999999999999999999999999999999999999999998876
Q ss_pred --eEEEEecCC--cCCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 --SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 --~iayv~Q~~--~i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.+||+||+| .+++.|++|||.|+.. .++ ++..++++.++|.. .+....++.+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 389999998 5678899999998632 232 24456666666641 011235678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999876655444 38999999999999864 999999999999999999988
Q ss_pred Hhc
Q 000671 806 LLA 808 (1361)
Q Consensus 806 ~~~ 808 (1361)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 653
No 144
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.6e-37 Score=362.75 Aligned_cols=203 Identities=28% Similarity=0.412 Sum_probs=175.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCC--cEEEEcC-----------e
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS--GTVNLYG-----------S 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~--G~v~~~g-----------~ 659 (1361)
+.++++|++++|+. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++| .
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999974 358999999999999999999999999999999999999999 9999987 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
|+||+|++.++ ..||+|||.|+.. .+ +++.+++++..+|.+..+ .++.+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-----------HLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-----------CChhhCCHHHHHHHHHH
Confidence 99999999876 5699999998642 22 234566677666654433 56679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC--CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||++.+|+++|||||||+||+..++++.+.+.+...+ |.|+|+||||++++.. ||+|++|++|++++.|+++++..+
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998876654444 7899999999998765 899999999999999999999865
Q ss_pred C
Q 000671 809 G 809 (1361)
Q Consensus 809 ~ 809 (1361)
.
T Consensus 230 p 230 (362)
T TIGR03258 230 P 230 (362)
T ss_pred c
Confidence 4
No 145
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-37 Score=343.81 Aligned_cols=199 Identities=31% Similarity=0.417 Sum_probs=169.4
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 789999999964 3699999999999999999999999999999999999999999999876 38999
Q ss_pred ecCCcCC-CCCHHHHhhcCCCC-------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 664 SQTSWIQ-SGSIRDNILYGKPM-------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 664 ~Q~~~i~-~~ti~eni~~g~~~-------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|+|.++ +.|++||+.++... +. ++.++.++.+++.... ..++.+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHH
Confidence 9999876 46999999876321 11 2344555666654332 256678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||++.+|+++||||||++||+++.+.+.+.+.....+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999999999988765554443 7899999999998765 89999999999999999988764
No 146
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.9e-37 Score=360.55 Aligned_cols=201 Identities=32% Similarity=0.443 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|+. .++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++| .++|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 789999999964 3589999999999999999999999999999999999999999999987 49999
Q ss_pred ecCCcCCC-CCHHHHhhcCCCC-------C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 664 SQTSWIQS-GSIRDNILYGKPM-------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 664 ~Q~~~i~~-~ti~eni~~g~~~-------~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++.++. .|++|||.|+... + .++..++++..++.+..+ .++.+|||||||||+||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRVALA 148 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHHH
Confidence 99998765 6999999987431 2 234555666666643332 56779999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||++.+|+++|||||||+||+..++.+.+.+.+...+ ++|+|+||||++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999998766654444 7899999999998765 8999999999999999999997653
No 147
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-37 Score=353.76 Aligned_cols=204 Identities=25% Similarity=0.423 Sum_probs=172.6
Q ss_pred EEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997532 13699999999999999999999999999999999999999999998853
Q ss_pred -----------------------eEEEEecCC--cCCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCC
Q 000671 659 -----------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFD 706 (1361)
Q Consensus 659 -----------------------~iayv~Q~~--~i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~ 706 (1361)
.|||++|+| .++..||+|||.|+.. .++ ++..++++.++|..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 279999986 4677899999998742 222 3456666666664322
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-c
Q 000671 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-V 785 (1361)
Q Consensus 707 ~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~ 785 (1361)
...++.+||||||||++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++|||++.+.. |
T Consensus 159 ------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 159 ------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 125678999999999999999999999999999999999999999887665544568999999999998755 8
Q ss_pred CeEEEEeCCeEEEecChHHHHhc
Q 000671 786 DRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 786 d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|+|++|++|++++.|+++++..+
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998654
No 148
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6e-37 Score=343.91 Aligned_cols=199 Identities=22% Similarity=0.352 Sum_probs=167.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~i 660 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468899999963 3599999999999999999999999999999999999999999998876 28
Q ss_pred EEEecCCcCCC-CCHHHHhhcCCCC-------------C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 661 AYVSQTSWIQS-GSIRDNILYGKPM-------------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 661 ayv~Q~~~i~~-~ti~eni~~g~~~-------------~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
+|++|++.++. .|++||+.++... + .++..++++.+++.. ..+.++.+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCH
Confidence 99999987765 5999999875321 0 112334444444432 23467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|++++|||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999988766544478999999999999876 89999999999999999
Q ss_pred hHHHHh
Q 000671 802 YQELLL 807 (1361)
Q Consensus 802 ~~~l~~ 807 (1361)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 888753
No 149
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=7.8e-37 Score=354.27 Aligned_cols=202 Identities=24% Similarity=0.391 Sum_probs=172.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~i 660 (1361)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46899999999964 4699999999999999999999999999999999999999999999976 49
Q ss_pred EEEecCCcCC-CCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
||+||++.++ +.|++||+.|... .+. ++.+++++.+++....+ .+..+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-----------AKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CchhhCCHHHHHHHHHHH
Confidence 9999998775 5799999985221 121 23445566665543322 455689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|++++|++++|||||+|||+..++.+++.+.+...+|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999988765554568999999999999976 899999999999999999998643
No 150
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-37 Score=351.90 Aligned_cols=205 Identities=21% Similarity=0.411 Sum_probs=171.8
Q ss_pred cEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
.++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 24699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEecCC--cCCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ----~iayv~Q~~--~i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.|||++|+| .+++.|++|||.|+.. .+. ++..++++.++|..+. ....+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 379999997 5677899999998632 232 2344555555554222 1256789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999998876555443 48999999999998865 8999999999999999999
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++...
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 88653
No 151
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-37 Score=362.27 Aligned_cols=202 Identities=26% Similarity=0.387 Sum_probs=174.5
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iay 662 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++| .|+|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4789999999964 3589999999999999999999999999999999999999999999877 3999
Q ss_pred EecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++|++.++ +.|++|||.|+.. .+ .++.+++++.+++...++ .+..+|||||||||+||||+
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 99998876 5699999998643 22 234566777777754433 45678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
+.+|+++||||||++||+..++.+.+.+.+...+ ++|+|+||||++.+.. ||+|++|++|++++.|+++++....
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999988766554443 8999999999998765 8999999999999999999987643
No 152
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-37 Score=349.19 Aligned_cols=199 Identities=29% Similarity=0.460 Sum_probs=172.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48899999999632 3699999999999999999999999999999999999999999999877 38
Q ss_pred EEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+| .++..|++||+.|+.. .+ .+++.++++.+++.+..+ ....+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRD-----------KPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CChhhCCHHHHHHHHHH
Confidence 9999998 5778899999998632 22 235667777777765443 45568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999987666554458999999999999865 899999999999999998754
No 153
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.3e-36 Score=336.78 Aligned_cols=198 Identities=42% Similarity=0.792 Sum_probs=178.2
Q ss_pred EEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------
Q 000671 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1361)
Q Consensus 596 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------------- 658 (1361)
.+.|++|+|+.+ .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999854 4699999999999999999999999999999999999999999998854
Q ss_pred eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 659 ~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
.++|++|+|.+++.|++||+.++.+.+.++..++++++++.+.++.+|.|++|.++.++.+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 38999999998889999999987666666778889999998888889999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHH-HHHHh-cCCcEEEEEccCchHHhhcCeEEEEeCCe
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNE-CVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~-~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1361)
+++||||||++||+.+.+.+.+. ++... .+++|+|++||+.+.++.+|++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988773 44443 34789999999999998899999999884
No 154
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-37 Score=338.02 Aligned_cols=192 Identities=30% Similarity=0.416 Sum_probs=163.3
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999964 3699999999999999999999999999999999999999999999876 38999
Q ss_pred ecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++.++ +.|++||+.++.. .+ .++..++++.+++.+.++ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHHh
Confidence 9998765 5799999987532 12 234556666666654433 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999876655444 48999999999998866 8999999999998765
No 155
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.7e-37 Score=335.01 Aligned_cols=188 Identities=34% Similarity=0.503 Sum_probs=162.4
Q ss_pred EEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEEecC
Q 000671 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVSQT 666 (1361)
Q Consensus 597 ~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------~iayv~Q~ 666 (1361)
++|++++|+.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 67899999642 4689999999999999999999999999999999999999999999887 48999999
Q ss_pred C--cCCCCCHHHHhhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000671 667 S--WIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1361)
Q Consensus 667 ~--~i~~~ti~eni~~g~~---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1361)
| .+++.|++||+.++.+ .+.++..++++.+++.+.++ ....+||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 7 4567899999988643 22356777888888765433 455689999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 742 lLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999887665544568999999999999875 8999999999874
No 156
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-37 Score=338.84 Aligned_cols=197 Identities=31% Similarity=0.422 Sum_probs=166.6
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEec
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------~iayv~Q 665 (1361)
++++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999997421 14699999999999999999999999999999999999999999999877 4899999
Q ss_pred CCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 666 ~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
++.++. .|++||+.++.. .+ .++..+.++.+++.+.++ .+..+||||||||++||||++++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHcC
Confidence 988765 799999987532 11 234566777777754443 45578999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEe--CCeEEEecCh
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 802 (1361)
|+++||||||++||+.+.+.+++.+.+... .++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999877655433 48999999999998765 89999999 7999988764
No 157
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=357.97 Aligned_cols=203 Identities=27% Similarity=0.374 Sum_probs=172.3
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999997321 34699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCCC-CCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 -~iayv~Q~~~i~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
.|+|++|++.++. .|++||+.++.. .+. ++..+.++..++.+..+ .++.+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 3999999988764 799999987532 222 23445566655543322 466789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999877665444 38999999999999876 89999999999999999999876
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
No 158
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=7.6e-37 Score=338.31 Aligned_cols=190 Identities=24% Similarity=0.411 Sum_probs=161.8
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6889999999643 23699999999999999999999999999999999999999999998876
Q ss_pred eEEEEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|++.++ +.|++||+.++.. .+ +++..++++.+++.+..+ ....+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 389999998776 4699999987521 11 245566777777754433 4556899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999987665544458999999999999876 899999999975
No 159
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=9.7e-37 Score=340.13 Aligned_cols=197 Identities=31% Similarity=0.442 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc-----cCCCcEEEEcC-----------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-----PKISGTVNLYG----------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~-----~~~~G~v~~~g----------- 658 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999964 36999999999999999999999999999999999999 99999998876
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.+++.|++||+.++.. . . +++..++++.+++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 3899999998778899999987532 1 1 2345566666666544332110 5789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
|++||||++.+|+++||||||++||+.+.+.+++.+.+...+ +|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999998766554444 899999999998765 89999999999999988654
No 160
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-37 Score=338.57 Aligned_cols=197 Identities=21% Similarity=0.367 Sum_probs=168.4
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999964 3699999999999999999999999999999999999999999999876 3899
Q ss_pred EecCCcCCC-CCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~~-~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++|++.++. .|++||+.++. ..+ .++.++.++.+++.+..+ .+..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999987654 69999998742 121 234566777777754433 45678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
+.+|+++||||||++||+++.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999988766655444 8899999999999876 899999999999999887664
No 161
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.6e-36 Score=341.98 Aligned_cols=198 Identities=31% Similarity=0.439 Sum_probs=167.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999962 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEecCCcCC-CCCHHHHhhcCCC---------------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 659 ~iayv~Q~~~i~-~~ti~eni~~g~~---------------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
.++|++|++.++ +.|++||+.++.. .+.++..++++.+++...++ .++.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCH
Confidence 289999998766 4799999987531 01234455666666654332 56779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999998876655433 37899999999999865 8999999999999999
Q ss_pred ChHHH
Q 000671 801 NYQEL 805 (1361)
Q Consensus 801 ~~~~l 805 (1361)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98886
No 162
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-36 Score=341.86 Aligned_cols=199 Identities=31% Similarity=0.425 Sum_probs=167.3
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+.+ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4689999999642 4699999999999999999999999999999999999999999998876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCCC------------C---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGKP------------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~~------------~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
.++|++|++.++. .|++||+.++.. . +.++..++++.+++... ...++.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 3899999987654 799999986531 1 12234445555555432 2356789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999876655443 48999999999999885 8999999999999999
Q ss_pred ChHHHH
Q 000671 801 NYQELL 806 (1361)
Q Consensus 801 ~~~~l~ 806 (1361)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988863
No 163
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=339.34 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=173.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4789999999963 3689999999999999999999999999999999999999999999876 38
Q ss_pred EEEecCCcCCCCCHHHHhhcCCCC---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 661 AYVSQTSWIQSGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 661 ayv~Q~~~i~~~ti~eni~~g~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
+|++|++.+++.|++||+.++... ..++..+.++.+++..++. .+.+.+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA----------TRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999988888999999876432 2345566777777643321 246778999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999998876655444 48999999999999875 899999999999999999988754
No 164
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=345.99 Aligned_cols=203 Identities=24% Similarity=0.422 Sum_probs=175.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|+++.|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 58999999999642 34699999999999999999999999999999999999999999999887 38
Q ss_pred EEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+| .+++.|++|||.++.. .. .++..++++.++|...++ .+..+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-----------REPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 4677899999988632 22 234566777777765554 45568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||++.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998766654444 8999999999999888999999999999999999888654
No 165
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.9e-36 Score=333.18 Aligned_cols=192 Identities=22% Similarity=0.347 Sum_probs=167.0
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999963 4699999999999999999999999999999999999999999999977 38999
Q ss_pred ecCCcCC-CCCHHHHhhcCC---CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000671 664 SQTSWIQ-SGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 664 ~Q~~~i~-~~ti~eni~~g~---~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1361)
+|++.++ +.|++||+.++. ..++++.+++++..++.+.++ .++.+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 679999997753 234566777788887765443 4567899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999887665544468999999999999875 8999999999998764
No 166
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-36 Score=345.32 Aligned_cols=200 Identities=26% Similarity=0.447 Sum_probs=171.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~i 660 (1361)
++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6789999999632 3599999999999999999999999999999999999999999998876 28
Q ss_pred EEEecCCc--CCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~~--i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+|. +++.|++|||.++.. .+ .++.+++++.+++....+ ..+.+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999985 567899999988632 22 234556666666654433 45678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||++.+|+++||||||++||+.+...+++.+.....+|+|+|++||+++.++.||+|++|++|++++.|+.+++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999988776554446899999999999998899999999999999999988764
No 167
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=357.94 Aligned_cols=205 Identities=26% Similarity=0.365 Sum_probs=175.3
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eE
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~i 660 (1361)
...++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .|
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346999999999964 3589999999999999999999999999999999999999999999987 38
Q ss_pred EEEecCCcCCC-CCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
||++|++-++. .||+|||.|+.. .++ ++..++++..++....+ .++.+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 99999988764 699999998742 222 34455666666654332 566799999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
|++.+|+++|||||||+||+..++.+.+.+.+... .|.|+|+||||.+.+.. +|+|++|++|++++.|+++++..+..
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 99999999999999999999999998876655443 48999999999998655 89999999999999999999986543
No 168
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.4e-36 Score=336.82 Aligned_cols=191 Identities=28% Similarity=0.417 Sum_probs=160.6
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997421 14699999999999999999999999999999999999999999998765
Q ss_pred --eEEEEecCCcCCC-CCHHHHhhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 --SIAYVSQTSWIQS-GSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 --~iayv~Q~~~i~~-~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
.++|++|++.++. .|++||+.++..+ + ++++.++++.+++.+.++ .++.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 3899999987765 5999999885321 1 234556666666654332 55678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeE
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1361)
+||||++.+|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999998876655444 48999999999998877899999999974
No 169
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-36 Score=338.09 Aligned_cols=202 Identities=26% Similarity=0.406 Sum_probs=169.9
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999997431 12699999999999999999999999999999999999999999998875
Q ss_pred -eEEEEecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 -~iayv~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
.++|++|++.++. .|++||+.++.. .+ .++..+.++..++.+.++ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 3899999998775 699999987522 22 223455566666643332 456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999988766554444 8999999999999876 89999999999999999887753
No 170
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=347.53 Aligned_cols=204 Identities=24% Similarity=0.415 Sum_probs=171.5
Q ss_pred cEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
.++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 14699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ----~iayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|+| .+++.|++|||.++.. .. .++.+++++.+++..++. ..+..+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI----------SKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh----------hCCcccCCHHHH
Confidence 279999997 4667899999987531 22 224456666666642221 256779999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887665444468999999999999865 89999999999999999998
Q ss_pred HHh
Q 000671 805 LLL 807 (1361)
Q Consensus 805 l~~ 807 (1361)
+..
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 764
No 171
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.4e-36 Score=335.83 Aligned_cols=198 Identities=30% Similarity=0.471 Sum_probs=165.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~i 660 (1361)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999964 3689999999999999999999999999999999999999999998876 28
Q ss_pred EEEecCCcCCC-CCHHHHhhcCCCCC-----HHHHHHHHHHh-cchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 661 AYVSQTSWIQS-GSIRDNILYGKPMD-----KARYDKAIKAC-ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 661 ayv~Q~~~i~~-~ti~eni~~g~~~~-----~~~~~~~~~~~-~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
+|++|++.++. .|++||+.++.... .++..++++.+ .+.. ....++.+||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE-----------RRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhh-----------hhhCchhhCCHHHHHHHHHHHH
Confidence 99999987765 59999998764321 12233344433 1221 1235678999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHH
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999887665544468999999999998766 8999999999999999887764
No 172
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=313.70 Aligned_cols=435 Identities=15% Similarity=0.181 Sum_probs=294.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 342 SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1361)
Q Consensus 342 ~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l 421 (1361)
.+..-.++|..++..|..--+ ..-.+.+++.+..-++.|+..|.-.+..+..+-.+.+-+..++..|+.+-+...+
T Consensus 76 gq~~I~klr~~~~~kil~tpl----erier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~ 151 (546)
T COG4615 76 GQHFIYKLRSEFIKKILDTPL----ERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFL 151 (546)
T ss_pred HHHHHHHHHHHHHHHHhcCHH----HHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444666666655543222 2122345678899999999999866666666555555555666667666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHH-HHHHHHHHHHHHHHHHHH
Q 000671 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKS-LIESRREKEFKWLSEAQL 498 (1361)
Q Consensus 422 ~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~--~f~~-~i~~~R~~El~~l~~~~~ 498 (1361)
..++.+++.+..+....+...++..+..+..|+-.+..+.++.|-|.+|+..=.. .+.+ .+...++.|- ...+
T Consensus 152 l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~ 227 (546)
T COG4615 152 LTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIR 227 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhh
Confidence 6666666766777776666677777777888999999999999999998875322 1222 2222333221 1111
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000671 499 RKAYG-TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1361)
Q Consensus 499 ~~~~~-~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 577 (1361)
...+. ....|..-.+.+++-...|......-=+...+.|.....-.++.|+.+....++.+.+|.++++||.++=..|+
T Consensus 228 ~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~ 307 (546)
T COG4615 228 ANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPY 307 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCc
Confidence 12221 12233322222222211111111000112234443344555799999999999999999999999999854443
Q ss_pred CCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc
Q 000671 578 LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657 (1361)
Q Consensus 578 ~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~ 657 (1361)
... ..+....++-..++++|+.|+|.+.. .-+..||++|++||++-|+|.||||||||++.+.|+++|++|+|.++
T Consensus 308 ~a~--~~~~q~~p~~~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ld 383 (546)
T COG4615 308 KAD--FPRPQAFPDWKTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (546)
T ss_pred ccc--CCCCCcCCcccceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeEC
Confidence 221 11111112345799999999998653 67899999999999999999999999999999999999999999999
Q ss_pred Ce-------------EEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 658 GS-------------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 658 g~-------------iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
|+ ++-|+-|-|+|+.++ -+.. -.++..++.++..++....+ +.+|..+ ...||-|
T Consensus 384 g~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStG 452 (546)
T COG4615 384 GKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTG 452 (546)
T ss_pred CccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccc
Confidence 84 222333333333221 1122 34566666777666654433 3344332 3579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
||.|+++--|+..+.|||++||=-+.-||+-++..++..+-.. .+|||++.+|||-.+...|||++.|++|+++|.
T Consensus 453 QkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 453 QKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999999999999999999998776443 469999999999999999999999999999864
No 173
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-36 Score=337.85 Aligned_cols=197 Identities=24% Similarity=0.350 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
.++++|++++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 14699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEecCCcCCC-CCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 ---SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 ---~iayv~Q~~~i~~-~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.++|++|++.++. .|++||+.++. ..+ +++..++++.+++.+.+ .+++.+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 3899999987765 59999998742 122 23455666666664332 25667899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEecC
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999998876655433 5899999999999998889999999999998765
No 174
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5e-36 Score=329.50 Aligned_cols=189 Identities=25% Similarity=0.471 Sum_probs=164.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ 659 (1361)
+.++++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999753 23699999999999999999999999999999999999999999999876 4
Q ss_pred EEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000671 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 660 iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1361)
|+|++|+|.+++.|++||+.+...++.++..+.++ +++++.+||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999988899999998755444333322222 235778999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecC
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1361)
++||||||++||+...+.+.+.+... .+++|+|++||+++.+..+|++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999988765544 46899999999999988899999999999998775
No 175
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.4e-36 Score=358.62 Aligned_cols=201 Identities=24% Similarity=0.433 Sum_probs=174.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| ++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4789999999974 4699999999999999999999999999999999999999999999987 39
Q ss_pred EEEecCCcC-CCCCHHHHhhcCCC-----C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 661 AYVSQTSWI-QSGSIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 661 ayv~Q~~~i-~~~ti~eni~~g~~-----~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
||++|++.+ ++.|++||+.++.. + +.++.+++++..++.+..+ ....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 999999876 68899999988641 1 1335566777777754332 45678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+|||||+++|+++||||||++||+..+..+.+.+.+...+++|+|++||+++.+.+ ||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999887665544468999999999999865 89999999999999999999875
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
No 176
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-36 Score=346.13 Aligned_cols=199 Identities=29% Similarity=0.388 Sum_probs=167.9
Q ss_pred EEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------
Q 000671 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1361)
Q Consensus 596 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------------- 658 (1361)
.++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 34566666653 3589999999999999999999999999999999999999999998865
Q ss_pred eEEEEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|++.++ +.|++||+.++.. .+ .++..++++.+++.+.++ ....+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-----------KYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CCcccCCHHHHHHHHH
Confidence 389999999876 5799999987521 22 234566777777765444 4456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999998876655433 48999999999998765 899999999999999999998754
No 177
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.5e-36 Score=334.65 Aligned_cols=195 Identities=21% Similarity=0.357 Sum_probs=165.0
Q ss_pred EEEEeeEEEeCCCCC-CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEE
Q 000671 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~ia 661 (1361)
++++|++++|+.... .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 678999999975311 2699999999999999999999999999999999999999999999876 389
Q ss_pred EEecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 662 yv~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
|++|++.++. .|++||+.+... .+ .++..++++..++.+.++ +++.+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHHH
Confidence 9999997766 599999976321 11 234556677776654333 5677899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999887665554568999999999998875 8999999999998754
No 178
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.4e-36 Score=334.12 Aligned_cols=198 Identities=24% Similarity=0.433 Sum_probs=168.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|+++.|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999642 24699999999999999999999999999999999999999999999876 3899
Q ss_pred EecCCcCC-CCCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++|++.++ +.|++||+.++. ... .++.+++++.+++.+.++ ....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99998776 679999998642 122 234566777777754332 45678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
+.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999988765543 346899999999999876 899999999999999988764
No 179
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.8e-36 Score=349.00 Aligned_cols=201 Identities=26% Similarity=0.396 Sum_probs=171.0
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~i 660 (1361)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 46899999999964 3599999999999999999999999999999999999999999999876 49
Q ss_pred EEEecCCcCC-CCCHHHHhhcC-C--CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQ-SGSIRDNILYG-K--PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~-~~ti~eni~~g-~--~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
||+||++.++ +.|++||+.+. . ..+. ++.+++++.+++.+.. ..+..+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999998776 57999999742 1 1222 2334455555554332 2456789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999987766554568999999999999876 89999999999999999998864
No 180
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-36 Score=345.78 Aligned_cols=202 Identities=26% Similarity=0.449 Sum_probs=173.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSDG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 58999999999632 4699999999999999999999999999999999999999999999876
Q ss_pred eEEEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 ~iayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
.++|++|+| .+++.|++||+.++.. +. .++..++++.+++....+ .++.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHH
Confidence 289999998 4678899999987521 22 234566677777754332 567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999988766554443 8999999999999875 99999999999999999999865
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 181
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.8e-36 Score=353.06 Aligned_cols=202 Identities=26% Similarity=0.406 Sum_probs=172.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~i 660 (1361)
..|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 46999999999974 3599999999999999999999999999999999999999999999987 39
Q ss_pred EEEecCCcCC-CCCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~-~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
||+||++.++ +.|++||+.+.. ..+ .++.+++++.++|.+.. ..+..+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHHH
Confidence 9999998774 679999997521 112 12334455555554322 2556789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|++++|+++||||||+|||+.+.+.+++.+.+...+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999988776555568999999999999876 899999999999999999998643
No 182
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.7e-36 Score=337.30 Aligned_cols=200 Identities=23% Similarity=0.384 Sum_probs=169.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 678999999963 3699999999999999999999999999999999999999999999876 3899
Q ss_pred EecCCcC-CCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWI-QSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i-~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++|++.+ ++.|++||+.++.. ... ++..+.++..++... ...++.+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999876 57899999986532 222 233444555555432 2356789999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
+.+|+++||||||++||+.+.+.+.+.+.+... +|+|+|++||+++.+..||++++|++|++++.|+++++..+
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999876655443 58999999999999888999999999999999999888654
No 183
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-36 Score=341.21 Aligned_cols=205 Identities=24% Similarity=0.394 Sum_probs=172.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g--------- 658 (1361)
..++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 46899999999964 359999999999999999999999999999999999864 5899998865
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
.++|++|++.+++.|++||+.++.. . . .++.++.++.+++.+.+.. ..++.+.+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHH
Confidence 3899999998888899999987521 1 1 2345556666666433221 2346778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765544 457899999999999865 8999999999999999998
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88643
No 184
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=339.91 Aligned_cols=204 Identities=25% Similarity=0.352 Sum_probs=173.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc---CCCcEEEEcC------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG------------ 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~---~~~G~v~~~g------------ 658 (1361)
.|+++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 368999999999999999999999999999999999974 6899999876
Q ss_pred -eEEEEecCCcCCCCCHHHHhhcCCCC---------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 -SIAYVSQTSWIQSGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 -~iayv~Q~~~i~~~ti~eni~~g~~~---------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
.++|++|++.+++.|++||+.++... .+++..++++.+++.+.+..+ ..+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 38999999998889999999875211 122456677777775544321 2356789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999987755443 458999999999998865 89999999999999999998864
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
No 185
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-36 Score=338.80 Aligned_cols=197 Identities=28% Similarity=0.326 Sum_probs=169.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEe
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------~iayv~ 664 (1361)
..++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999964 3699999999999999999999999999999999999999999999876 489999
Q ss_pred cCCcCCC-CCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000671 665 QTSWIQS-GSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1361)
Q Consensus 665 Q~~~i~~-~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1361)
|++.++. .|++||+.++.. ..+++..++++.+++...++ .++.+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9987765 799999988642 12345667777777754432 5667999999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 743 FDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999998876655433 47999999999999865 8999999999999887654
No 186
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.7e-36 Score=345.25 Aligned_cols=201 Identities=26% Similarity=0.439 Sum_probs=177.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~ia 661 (1361)
.++++|++..|.. +..+|+|+||+|++||+++++||||||||||+++|+|+.+|++|+|.+.| +||
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4788999999973 24699999999999999999999999999999999999999999999988 499
Q ss_pred EEecCCcC-CCCCHHHHhhcC-----CC--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 662 YVSQTSWI-QSGSIRDNILYG-----KP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 662 yv~Q~~~i-~~~ti~eni~~g-----~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
|+||+|.+ .+.|++||+.|- .+ .++++.+++++..+|.++. ..+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999875 567999999873 22 3356788899988887632 25678899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCC-cEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|.++|++++|||||+||||..+..+++.+.....++ +||+++||.++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999988776666666 799999999999887 89999999999999999988754
No 187
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=4.8e-36 Score=334.31 Aligned_cols=205 Identities=29% Similarity=0.439 Sum_probs=176.1
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
..+.++++|++++|+.....++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34679999999999753334699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 000671 659 -SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1361)
Q Consensus 659 -~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1361)
.++|++|++.+++.|++||+.++.. .....+.+..+...+.+.++.++.|..+.+++++.+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 3899999998888999999998643 22233334444556677788887776677888899999999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeE
Q 000671 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1361)
Q Consensus 737 ~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1361)
+|+++||||||++||+++.+.+.+.+.. ..+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYD-WPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH-HcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999998876554 3456899999999999988999999999974
No 188
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.5e-36 Score=333.41 Aligned_cols=189 Identities=37% Similarity=0.572 Sum_probs=160.8
Q ss_pred EEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEecCCc
Q 000671 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQTSW 668 (1361)
Q Consensus 597 ~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------~iayv~Q~~~ 668 (1361)
++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 6789999964 3589999999999999999999999999999999999999999999987 3999999986
Q ss_pred C---CCCCHHHHhhcCCCC-----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 669 I---QSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 669 i---~~~ti~eni~~g~~~-----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
+ ++.|++||+.++... .+++.+++++.+++.+.++ .+..+||||||||++||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHH
Confidence 5 457999999875321 1235667777777765443 35678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
+.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999887666544478999999999999876 8999999886 55543
No 189
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.5e-36 Score=336.84 Aligned_cols=199 Identities=23% Similarity=0.401 Sum_probs=167.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~i 660 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999964 3599999999999999999999999999999999999999999998875 28
Q ss_pred EEEecCCcCCC-CCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
+|++|++.++. .|++||+.++.+ ... ++.++.++..++.+.. ...+.+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR-----------KSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHH
Confidence 99999987765 599999987532 111 2334555555554322 3567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999887665544468999999999988765 89999999999999999888753
No 190
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3e-36 Score=332.85 Aligned_cols=192 Identities=30% Similarity=0.430 Sum_probs=163.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999974 3689999999999999999999999999999999999999999999876 38999
Q ss_pred ecCCcCC-CCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++.++ +.|++||+.++.. ... ++..++++..++.+.++ ..+.+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 9999876 5699999987521 222 23445566666654333 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
.+|++++|||||++||+++.+.+.+.+..... +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999876655444 48999999999998876 8999999999998765
No 191
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=339.50 Aligned_cols=205 Identities=28% Similarity=0.392 Sum_probs=171.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g--------- 658 (1361)
..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 46899999999964 3589999999999999999999999999999999999987 489998765
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
.++|++|++.+++.|++|||.++.. .+ .++..++++.+++...+.. ....++.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD-------KLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHH-------HHhCCcccCCHHH
Confidence 3899999998888999999988632 12 1234455565555322211 1235678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765544 457899999999999865 8999999999999999999
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++..+
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 88643
No 192
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6.2e-36 Score=337.86 Aligned_cols=203 Identities=29% Similarity=0.416 Sum_probs=170.3
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC-----CcEEEEcC-----------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG----------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~-----~G~v~~~g----------- 658 (1361)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 689999999974 35899999999999999999999999999999999999998 99998865
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|+||++.+++.|++||+.++.. .+ .++..++++..++.++++ .....++.+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 3899999998888999999987521 11 123455666666653221 1133567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988755443 345899999999998865 899999999999999999888
Q ss_pred Hhc
Q 000671 806 LLA 808 (1361)
Q Consensus 806 ~~~ 808 (1361)
...
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 643
No 193
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=311.12 Aligned_cols=201 Identities=25% Similarity=0.347 Sum_probs=174.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
+++++++.+|++. ..+++|+||++++||+++|.|+||+||||+|+.|.+++.|++|.|.++| +||.
T Consensus 2 l~v~~l~K~y~~~--v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH--HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 5778899999762 4589999999999999999999999999999999999999999999987 5888
Q ss_pred EecC-CcCCCCCHHHHhhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQT-SWIQSGSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~-~~i~~~ti~eni~~g~~-------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++.+ +.....|+||||.|... .-+.+..++.+..++.+-++ .+..++|-||||||+||||+
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 8855 44557899999986321 22567778888888877665 57788999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
.+||++++||||+||||..+.+.+.+.+......|+++|++||.++.++. ||+|+++++|+++..|+.+++.++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999998776655555679999999999999985 999999999999999999998754
No 194
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-36 Score=342.77 Aligned_cols=204 Identities=25% Similarity=0.393 Sum_probs=174.4
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48899999999754334699999999999999999999999999999999999999999999876 38
Q ss_pred EEEecCCc--CCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~~--i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+|. +++.|+.|||.++.. ... ++++++++.+++....+ .++..||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999983 677899999987521 222 34456667777654332 45678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999988766544444 8999999999999888999999999999999999988754
No 195
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-36 Score=338.85 Aligned_cols=202 Identities=28% Similarity=0.397 Sum_probs=168.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999752 3589999999999999999999999999999999999999999999876 389
Q ss_pred EEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 662 YVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 662 yv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
|++|+|.++ ..|++||+.++.. .+ .++..++++..++... ....+++.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHH
Confidence 999999876 4799999987532 22 2234455555555420 01235678999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++.+|++++|||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999998876665444 38999999999998765 89999999999999999888754
No 196
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-36 Score=344.62 Aligned_cols=205 Identities=20% Similarity=0.353 Sum_probs=170.6
Q ss_pred cEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
.++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999997432 13699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEecCC--cCCCCCHHHHhhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ----~iayv~Q~~--~i~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.|+|++|+| .+++.|++||+.++.. .+.+ +.+++++..++..+. ...++.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 289999997 5677899999987531 2222 234445555553221 1356788999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887765544458999999999999865 89999999999999999988
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 7653
No 197
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-36 Score=343.67 Aligned_cols=204 Identities=22% Similarity=0.350 Sum_probs=174.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCC---cEEEEcC-----------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS---GTVNLYG----------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~---G~v~~~g----------- 658 (1361)
..++++|+++.|+.. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 468999999999643 2469999999999999999999999999999999999999988 8998876
Q ss_pred --eEEEEecCCc--CCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 --~iayv~Q~~~--i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.+||++|+|. +++.|++|||.|+.. .+. ++..++++.+++.+..+ ....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHH
Confidence 3899999984 568899999988632 222 34566777777765443 4567999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999876655444 389999999999998779999999999999999998886
Q ss_pred hc
Q 000671 807 LA 808 (1361)
Q Consensus 807 ~~ 808 (1361)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 53
No 198
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=6.1e-36 Score=349.29 Aligned_cols=207 Identities=24% Similarity=0.374 Sum_probs=173.3
Q ss_pred CcEEEEeeEEEeCCCC----------CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----
Q 000671 593 RSVKIQEGNFSWDPEL----------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~----------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---- 658 (1361)
..++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4689999999996421 24689999999999999999999999999999999999999999998876
Q ss_pred ------------eEEEEecCCc--C-CCCCHHHHhhcCC-----CCCH----HHHHHHHHHhcchHHHhcCCCCCCcccc
Q 000671 659 ------------SIAYVSQTSW--I-QSGSIRDNILYGK-----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIG 714 (1361)
Q Consensus 659 ------------~iayv~Q~~~--i-~~~ti~eni~~g~-----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig 714 (1361)
+|+||+|+|. + ...||.|||.++. ..++ ++..+.++.+++.++. ..
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------IN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------hc
Confidence 4999999983 4 4679999997531 1332 2344566666664322 23
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEe
Q 000671 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE 792 (1361)
Q Consensus 715 ~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~ 792 (1361)
..+.+|||||||||+||||++.+|+++|+||||+|||+.+++.+.+.+..... .+.|+|+||||++.+.. ||+|++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 56789999999999999999999999999999999999999999876655443 38899999999999976 89999999
Q ss_pred CCeEEEecChHHHHhcC
Q 000671 793 GGQITQSGNYQELLLAG 809 (1361)
Q Consensus 793 ~G~i~~~g~~~~l~~~~ 809 (1361)
+|+|++.|+.+++..+.
T Consensus 237 ~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 237 LGHAVELGTYDEVYHNP 253 (331)
T ss_pred CCEEEEEcCHHHHHcCC
Confidence 99999999999998653
No 199
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-36 Score=345.30 Aligned_cols=206 Identities=23% Similarity=0.378 Sum_probs=169.2
Q ss_pred CcEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 593 RSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
+.++++|++++|+.+. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999997532 13599999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEecCCc--CCCCCHHHHhhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 ------SIAYVSQTSW--IQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 ------~iayv~Q~~~--i~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.|+|++|+|. +++.|++||+.|+.. ...+ +..+.++.+++..+. ....+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~----------~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDY----------VKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hcCChhhCCHH
Confidence 3899999984 567799999988632 2221 223344444442111 23567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
||||++||||++.+|+++||||||++||+.+.+.+++.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999998876654433 48999999999998765 89999999999999999
Q ss_pred hHHHHhc
Q 000671 802 YQELLLA 808 (1361)
Q Consensus 802 ~~~l~~~ 808 (1361)
++++.+.
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9887643
No 200
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-36 Score=341.64 Aligned_cols=204 Identities=25% Similarity=0.412 Sum_probs=173.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ 659 (1361)
..++++|++++|+.+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 358999999999632 24699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEecCC--cCCCCCHHHHhhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~--~i~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
++|++|+| .+++.|++||+.++.. ++.+ +..++++..++...++ .++.+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHH
Confidence 89999998 4567899999987531 2322 3455667777765443 4567999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+..||++++|++|++.+.|+.+++...
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998776654444 5899999999998878999999999999999998887653
No 201
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.9e-36 Score=335.61 Aligned_cols=200 Identities=26% Similarity=0.421 Sum_probs=169.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------~ 659 (1361)
++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 678999999963 3689999999999999999999999999999999999999999998876 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
++|++|++.++ ..|++||+.++. ..+. ++..++++..++.+.++ .++.+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhhcCHHHHHHHHH
Confidence 89999998766 579999998753 1222 23445556555543332 4567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|++++|||||++||+++.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999887655444468999999999999876 899999999999999999887643
No 202
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-36 Score=328.80 Aligned_cols=206 Identities=27% Similarity=0.413 Sum_probs=175.0
Q ss_pred cEEEEeeEEEeCCCC---------------------CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCc
Q 000671 594 SVKIQEGNFSWDPEL---------------------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~---------------------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G 652 (1361)
.|+++|++.-+..++ ...-++|+||+|+.||+.+|.|-+|||||||++++.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 577777777665431 11247899999999999999999999999999999999999999
Q ss_pred EEEEcC-----------------eEEEEecCC-cCCCCCHHHHhhcCCCCC-------HHHHHHHHHHhcchHHHhcCCC
Q 000671 653 TVNLYG-----------------SIAYVSQTS-WIQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDH 707 (1361)
Q Consensus 653 ~v~~~g-----------------~iayv~Q~~-~i~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~dl~~l~~ 707 (1361)
+|.++| ++++|+|+- .+++.||.||+.||.+.. +++..++++..+|...-+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~---- 159 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD---- 159 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh----
Confidence 999988 499999995 457789999999997632 345566777778876554
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHH-hhc
Q 000671 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEV 785 (1361)
Q Consensus 708 gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~ 785 (1361)
..+.+||||+||||.||||+..+|||+|+|||||||||-.+..+-+++++... -+||+|+||||+++. +-.
T Consensus 160 -------~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 160 -------KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -------cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 45668999999999999999999999999999999999999998888776543 379999999999885 457
Q ss_pred CeEEEEeCCeEEEecChHHHHhcCc
Q 000671 786 DRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 786 d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
|||.+|+||+|++.|+++|+..++.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCcc
Confidence 9999999999999999999987653
No 203
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=5.9e-36 Score=332.46 Aligned_cols=192 Identities=28% Similarity=0.427 Sum_probs=161.2
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999996422 24699999999999999999999999999999999999999999998865
Q ss_pred --eEEEEecCCcCC-CCCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 --SIAYVSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 --~iayv~Q~~~i~-~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
.++|++|++.++ +.|++||+.++. .++ .++..++++.+++...++ ..+.+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 389999998776 569999998742 122 223455666666643332 45678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEE
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1361)
+||||++.+|+++||||||++||+++.+.+.+.+..... .++|+|++||+++.+..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999998876654433 478999999999998889999999999985
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.6e-36 Score=352.78 Aligned_cols=188 Identities=33% Similarity=0.481 Sum_probs=163.2
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------------eEEEEecCCc
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------------SIAYVSQTSW 668 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------------~iayv~Q~~~ 668 (1361)
..+++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .++|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 3579999999999999999999999999999999999999999999876 3999999998
Q ss_pred CCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 669 IQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 669 i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
+++ .|++||+.++.. .+ .++..++++..+|....+ ..+.+||||||||++||||++.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-----------~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-----------KKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 875 799999998642 22 234556677777654433 45678999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
+||||||||||+.+.+.+.+.+..... .++|+|++|||++++.. +|+|++|++|++++.|+++++..+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999887766544 38999999999998755 899999999999999999999765
No 205
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-36 Score=338.58 Aligned_cols=207 Identities=28% Similarity=0.410 Sum_probs=173.8
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------- 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g------- 658 (1361)
..+.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 10 ~~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 10 APSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CCceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 3457999999999964 369999999999999999999999999999999999986 5899998865
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
.++|++|++.++..|++||+.++.. .+. ++.+++++..++..++. ..+++++.+|||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 159 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSG 159 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCH
Confidence 3899999998888999999987532 222 34455666666543322 123467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. +|++++|++|++++.|+
T Consensus 160 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGN 238 (260)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999988765544 457899999999999865 89999999999999999
Q ss_pred hHHHHhc
Q 000671 802 YQELLLA 808 (1361)
Q Consensus 802 ~~~l~~~ 808 (1361)
.+++...
T Consensus 239 ~~~~~~~ 245 (260)
T PRK10744 239 TDTIFTK 245 (260)
T ss_pred HHHHHhC
Confidence 9988653
No 206
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=341.43 Aligned_cols=204 Identities=24% Similarity=0.376 Sum_probs=175.1
Q ss_pred cEEEEeeEEEeCCCC---CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 594 SVKIQEGNFSWDPEL---AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~---~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
-++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 488999999997431 24699999999999999999999999999999999999999999998876
Q ss_pred --eEEEEecCCc--CCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 --~iayv~Q~~~--i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.++|++|+|. ++..|+.||+.|+.. .+ +++.+++++.++|.+.++ ....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-----------HAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHH
Confidence 3899999984 566799999998632 22 245667777778765544 4567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|.|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999998876554433 489999999999998789999999999999999999986
Q ss_pred hc
Q 000671 807 LA 808 (1361)
Q Consensus 807 ~~ 808 (1361)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
No 207
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=8.6e-36 Score=338.64 Aligned_cols=203 Identities=26% Similarity=0.414 Sum_probs=171.6
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
++.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 356999999999974 3699999999999999999999999999999999999999999998776
Q ss_pred -------------eEEEEecCCcCCC-CCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000671 659 -------------SIAYVSQTSWIQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 659 -------------~iayv~Q~~~i~~-~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1361)
.++|+||++.++. .|++||+.++. ..+ +++..++++..++...+. ...
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCC
Confidence 3899999998775 69999997642 122 223445555555543221 256
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 78999999999999999999999999999999999999999987665544468999999999999986 89999999999
Q ss_pred EEEecChHHHHh
Q 000671 796 ITQSGNYQELLL 807 (1361)
Q Consensus 796 i~~~g~~~~l~~ 807 (1361)
+++.|+++++..
T Consensus 230 i~~~~~~~~~~~ 241 (257)
T PRK10619 230 IEEEGAPEQLFG 241 (257)
T ss_pred EEEeCCHHHhhh
Confidence 999999988764
No 208
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-36 Score=329.44 Aligned_cols=192 Identities=28% Similarity=0.449 Sum_probs=163.0
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEec
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------~iayv~Q 665 (1361)
++++|+++.|+. .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999963 3699999999999999999999999999999999999999999999987 4999999
Q ss_pred CCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 666 ~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
++.++. .|++||+.+... .. .++..+.++..++..... .+..+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHHhcC
Confidence 987765 699999976421 11 234455666666654332 46678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999987765544468899999999999865 8999999999998754
No 209
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8.9e-36 Score=340.42 Aligned_cols=202 Identities=23% Similarity=0.324 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 36899999999963 4689999999999999999999999999999999999999999998876
Q ss_pred --eEEEEecCCcCCC-CCHHHHhhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 --SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 --~iayv~Q~~~i~~-~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.++|++|++.+++ .|++||+.++. ..+. ++..+.++.+++....+ .+..+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 3899999998775 59999998642 1222 23344555555543222 4567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999988766554433 7999999999999876 899999999999999999998
Q ss_pred Hhc
Q 000671 806 LLA 808 (1361)
Q Consensus 806 ~~~ 808 (1361)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
No 210
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.3e-35 Score=338.32 Aligned_cols=207 Identities=25% Similarity=0.354 Sum_probs=170.7
Q ss_pred cEEEEeeEEEeCCC------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000671 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------- 658 (1361)
.++++|++++|+.. .+.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999642 135699999999999999999999999999999999999999999998876
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~--i-~~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.++|++|+|. + ...|++||+.++. .++ .++..++++..++..++ ...++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhhC
Confidence 3999999973 3 3579999996532 122 23445555555553211 23567899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+.+... .|+|+|++||+++.+.. ||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999988876655444 38999999999999875 89999999999999
Q ss_pred ecChHHHHhcCc
Q 000671 799 SGNYQELLLAGT 810 (1361)
Q Consensus 799 ~g~~~~l~~~~~ 810 (1361)
.|+++++.....
T Consensus 232 ~g~~~~~~~~~~ 243 (265)
T TIGR02769 232 ECDVAQLLSFKH 243 (265)
T ss_pred ECCHHHHcCCCC
Confidence 999999876433
No 211
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=339.14 Aligned_cols=203 Identities=22% Similarity=0.337 Sum_probs=171.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999753 24589999999999999999999999999999999999999999999987 38
Q ss_pred EEEecCCc--CCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~~--i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+|. +++.|+++|+.++.. ... ++..++++..++.+..+ .++.+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999985 566799999988632 222 23344555555543322 46679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||++.+|+++||||||++||+.+.+.+++.+..... .++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999876655433 37999999999999878999999999999999999988654
No 212
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-36 Score=354.15 Aligned_cols=188 Identities=27% Similarity=0.412 Sum_probs=162.1
Q ss_pred CcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEecCCcCC-CC
Q 000671 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQ-SG 672 (1361)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------------~iayv~Q~~~i~-~~ 672 (1361)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| +++|++|++.++ +.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 379999999999999999999999999999999999999999998875 389999998876 46
Q ss_pred CHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 673 SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 673 ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
|++||+.++.. ++ .++..++++.++|....+ ..+.+||||||||++||||++.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-----------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-----------SYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632 22 234556677777754433 4567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 746 PFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 9999999999999877665443 48999999999998765 8999999999999999999987653
No 213
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.1e-35 Score=336.74 Aligned_cols=201 Identities=27% Similarity=0.432 Sum_probs=168.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3789999999964 3599999999999999999999999999999999999999999997754
Q ss_pred ------eEEEEecCCcCC-CCCHHHHhhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 ------SIAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 ------~iayv~Q~~~i~-~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++.++ +.|++||+.++. ..+. ++..+.++..++... ...++.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 389999998776 479999997642 1221 234445555554322 23567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999887655444458999999999999876 899999999999999999
Q ss_pred HHHHhc
Q 000671 803 QELLLA 808 (1361)
Q Consensus 803 ~~l~~~ 808 (1361)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 988643
No 214
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-35 Score=332.09 Aligned_cols=200 Identities=23% Similarity=0.352 Sum_probs=166.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999963 4699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCCC-CHH----HHHHHHHHh-cchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKPM-DKA----RYDKAIKAC-ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~~-~~~----~~~~~~~~~-~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
++|++|++.++. .|++||+.++... +.+ +..++++.. .+.+. ...++.+||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHER-----------RIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH-----------HhCchhhCCHHHHHHHHHHH
Confidence 899999987765 5999999886421 212 222223322 12111 12466789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999887666544568999999999998765 89999999999999999998864
No 215
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=336.05 Aligned_cols=199 Identities=26% Similarity=0.397 Sum_probs=170.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 3699999999999999999999999999999999999999999999876 389
Q ss_pred EEecCCcCCC-CCHHHHhhcCCC-----C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 662 YVSQTSWIQS-GSIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 662 yv~Q~~~i~~-~ti~eni~~g~~-----~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
|++|++.++. .|+.||+.++.. + +.++..++++.+++....+ .++..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 9999987765 499999988631 1 1234555666666654333 466789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999887665544468999999999999875 89999999999999999988764
No 216
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=336.13 Aligned_cols=200 Identities=21% Similarity=0.337 Sum_probs=168.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999963 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCC----------------CC------HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKP----------------MD------KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~----------------~~------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1361)
++|++|++.++. .|++||+.++.. .. .++..+.++..++... ...+
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH-----------ANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh-----------hhCC
Confidence 789999998765 599999997521 00 1123334444444322 3367
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCC
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGG 794 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1361)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999998766655444 7899999999999866 8999999999
Q ss_pred eEEEecChHHHHh
Q 000671 795 QITQSGNYQELLL 807 (1361)
Q Consensus 795 ~i~~~g~~~~l~~ 807 (1361)
++++.|+.+++..
T Consensus 231 ~i~~~~~~~~~~~ 243 (255)
T PRK11300 231 TPLANGTPEEIRN 243 (255)
T ss_pred eEEecCCHHHHhh
Confidence 9999999888754
No 217
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=338.87 Aligned_cols=200 Identities=26% Similarity=0.370 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------~ 659 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 678999999963 3699999999999999999999999999999999999999999998865 3
Q ss_pred EEEEecCCc--CCCCCHHHHhhcCC---CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTSW--IQSGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~~--i~~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
++|++|++. ++..|+.||+.++. ..+. ++..++++.+++....+ ..+.+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 899999975 46678999998742 1222 23445666666643322 4567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999887665544468999999999999865 899999999999999999887653
No 218
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-35 Score=332.14 Aligned_cols=198 Identities=29% Similarity=0.470 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~i 660 (1361)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999974 3699999999999999999999999999999999999999999999876 38
Q ss_pred EEEecCCcCCC-CCHHHHhhcCCCC---C-HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 661 AYVSQTSWIQS-GSIRDNILYGKPM---D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 661 ayv~Q~~~i~~-~ti~eni~~g~~~---~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++|++.++. .|++||+.++... . .+.+.++++..+...+ ...++..+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~----------~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKE----------MLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHH----------HhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999987765 5999999875321 1 2233444544432111 123567899999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
++|+++||||||++||+.+.+++.+.+..... .++|+|++||+++.+.. ||+|+++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999998876655444 37999999999999886 899999999999999998887
No 219
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=327.84 Aligned_cols=190 Identities=26% Similarity=0.398 Sum_probs=161.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|+++.|+. .++++|+||++++| +++|+||||||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999964 36999999999999 9999999999999999999999999999999877 3899
Q ss_pred EecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++|++.++. .|++||+.+... .+ +++.+++++.+++.+..+ ..+.+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 999998765 599999986321 11 234566777777764433 45678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
+++|+++||||||++||+.+.+.+.+.+.+.. +++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887655443 46899999999999875 8999999999998764
No 220
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=337.47 Aligned_cols=206 Identities=23% Similarity=0.378 Sum_probs=173.0
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC-------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG------- 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g------- 658 (1361)
.+..|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 4557999999999963 3699999999999999999999999999999999999974 899998876
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCC---C--C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~---~--~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.++|++|+|.+++.|++||+.++.. . . .++..++++.+++.+++. +..++.+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 3899999998887899999987531 1 1 233455666666644322 12246678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-hcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999987765443 457899999999999865 8999999999999999
Q ss_pred ChHHHHh
Q 000671 801 NYQELLL 807 (1361)
Q Consensus 801 ~~~~l~~ 807 (1361)
+.+++..
T Consensus 245 ~~~~~~~ 251 (267)
T PRK14235 245 DTEKMFT 251 (267)
T ss_pred CHHHHHh
Confidence 9988864
No 221
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=8.6e-36 Score=329.49 Aligned_cols=189 Identities=26% Similarity=0.409 Sum_probs=160.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+.+ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999643 3699999999999999999999999999999999999999999998876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|++.++. .|++||+.++.. .+ +++..+.++.+++...++ ....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHH
Confidence 3899999987765 699999987531 12 234556677777654433 3456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
|||++.+|+++||||||++||+++.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999887665544468999999999999886 899999999974
No 222
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-35 Score=339.75 Aligned_cols=201 Identities=25% Similarity=0.447 Sum_probs=170.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------~ 659 (1361)
++++|++++|+.+ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6799999999632 3589999999999999999999999999999999999999999998876 2
Q ss_pred EEEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
|+|++|+| .+++.|++||+.++.. .. .++..++++.+++....+ .++.+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 89999997 5677899999987531 22 134455666666643222 4567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999987765544458999999999999875 899999999999999999988653
No 223
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.6e-36 Score=328.73 Aligned_cols=187 Identities=31% Similarity=0.497 Sum_probs=158.6
Q ss_pred EEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEE
Q 000671 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYV 663 (1361)
Q Consensus 597 ~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv 663 (1361)
++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 ~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 67899999642 24689999999999999999999999999999999999999999999876 38999
Q ss_pred ecCCc--CCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 664 SQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 664 ~Q~~~--i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
+|++. +++.|++||+.++.. .+ .++..+.++..++.+.++ ++..+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 99983 577899999987522 22 223455666666654433 45678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
+.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999988766554458999999999999987 89999999985
No 224
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.6e-35 Score=330.49 Aligned_cols=196 Identities=28% Similarity=0.379 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEeCCCCC-CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 593 RSVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
..++++|++++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 35899999999975322 3589999999999999999999999999999999999999999998865
Q ss_pred ----eEEEEecCCcCCC-CCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ----SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~-~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.++. .|++||+.++. ..+ .++..++++.+++.+.++ .+..+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHH
Confidence 3899999987765 69999998642 111 335566777777765443 455689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
|++||||++.+|+++||||||++||+...+.+.+.+.+... .++|+|++||+++.+..+|++++|++|++++.
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998876655444 37899999999999888999999999999753
No 225
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-35 Score=326.53 Aligned_cols=190 Identities=29% Similarity=0.442 Sum_probs=161.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
|+++|++++|+.. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 4689999999642 2 399999999999999999999999999999999999999999987 38999
Q ss_pred ecCCcCCC-CCHHHHhhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQS-GSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~~-~ti~eni~~g~~-------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++.++. .|++||+.++.. .++++..++++.+++.+..+ ....+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-----------RLPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 99998775 599999987532 12335667777777765444 345689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
.+|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999998876655433 48999999999999876 8999999999998654
No 226
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-35 Score=334.25 Aligned_cols=200 Identities=29% Similarity=0.385 Sum_probs=171.0
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+. .++|+|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999974 3599999999999999999999999999999999999999999999877 28
Q ss_pred EEEecCCcC-CCCCHHHHhhcCCC-C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWI-QSGSIRDNILYGKP-M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i-~~~ti~eni~~g~~-~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
+|++|++.+ ++.|++||+.++.. . .+++.+++++..++....+ ....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHH
Confidence 999999876 67899999987532 1 1234556666666654333 456799999999999999
Q ss_pred HHc------cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 733 AVY------NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 733 al~------~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
|++ .+|+++||||||++||+.+.+.+.+.+.... .+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999887665544 458999999999999875 89999999999999999988
Q ss_pred HHh
Q 000671 805 LLL 807 (1361)
Q Consensus 805 l~~ 807 (1361)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
No 227
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.7e-35 Score=333.32 Aligned_cols=199 Identities=21% Similarity=0.340 Sum_probs=168.1
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
-++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999964 3699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCCC---------------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKPM---------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~~---------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
++|++|++.+++ .|++||+.++... ++++..+.++..++... ...+..+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-----------ADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHH
Confidence 899999988776 5999999875321 12233444444444322 23567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 999999999999999999999999999999999988765543 447899999999999876 899999999999999999
Q ss_pred HHHHh
Q 000671 803 QELLL 807 (1361)
Q Consensus 803 ~~l~~ 807 (1361)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 88764
No 228
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=8.8e-36 Score=329.38 Aligned_cols=188 Identities=23% Similarity=0.421 Sum_probs=160.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+. +.++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 678999999952 24699999999999999999999999999999999999999999998765
Q ss_pred eEEEEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|+|.++ ..|++||+.++.. .+ +++.++.++..++.+.++ ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-----------AFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 389999999876 4799999987521 22 235566777777754443 3456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
|||++.+|+++||||||++||+.+...+.+.+.....+++|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999987766544468999999999999876 89999999985
No 229
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-35 Score=338.53 Aligned_cols=202 Identities=27% Similarity=0.422 Sum_probs=172.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+.+ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999643 3589999999999999999999999999999999999999999999876 38
Q ss_pred EEEecCCc--CCCCCHHHHhhcCC---CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTSW--IQSGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~~--i~~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+|. +++.|++||+.++. ..++ +++++.++.+++.+.+. ..+..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999973 56789999998753 2333 24566677777765443 45678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||++.+|+++||||||++||+.+.+.+.+.+.....+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999988766554443 8999999999999865 899999999999999999998753
No 230
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=336.46 Aligned_cols=203 Identities=22% Similarity=0.307 Sum_probs=173.3
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
+...++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (265)
T PRK10253 4 SVARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80 (265)
T ss_pred cccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 3457999999999974 3599999999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCC-CCCHHHHhhcCC-C-------CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -SIAYVSQTSWIQ-SGSIRDNILYGK-P-------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -~iayv~Q~~~i~-~~ti~eni~~g~-~-------~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.++ +.|++||+.++. + .. .++..++++..++.+..+ .++.+||||||
T Consensus 81 ~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~ 149 (265)
T PRK10253 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQR 149 (265)
T ss_pred hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHH
Confidence 389999998765 579999998752 1 11 234556666666654332 56789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999877655444 48899999999998765 8999999999999999998
Q ss_pred HHHh
Q 000671 804 ELLL 807 (1361)
Q Consensus 804 ~l~~ 807 (1361)
++..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 8764
No 231
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=332.05 Aligned_cols=200 Identities=21% Similarity=0.375 Sum_probs=168.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 3699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
++|++|++.++. .|++||+.+... .+. ++..+.++..++... ...+..+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHH
Confidence 899999987765 699999987532 121 234445555544322 235678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999999876654444468999999999988765 89999999999999999988764
No 232
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-35 Score=336.68 Aligned_cols=202 Identities=25% Similarity=0.355 Sum_probs=172.2
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
+..++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 9 DTTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred CceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 346999999999963 3699999999999999999999999999999999999999999999887
Q ss_pred eEEEEecCCcC-CCCCHHHHhhcCCC--------C---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 SIAYVSQTSWI-QSGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ~iayv~Q~~~i-~~~ti~eni~~g~~--------~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++-+ +..|++||+.++.. . ..++..++++.+++...++ ....+|||||||
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~q 154 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSGGERQ 154 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCHHHHH
Confidence 38999999755 55699999987521 1 1234566777777754433 455689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999998876655443 38999999999999865 89999999999999999988
Q ss_pred HHh
Q 000671 805 LLL 807 (1361)
Q Consensus 805 l~~ 807 (1361)
+..
T Consensus 235 ~~~ 237 (265)
T PRK10575 235 LMR 237 (265)
T ss_pred hcC
Confidence 764
No 233
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.5e-35 Score=329.87 Aligned_cols=198 Identities=23% Similarity=0.336 Sum_probs=166.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ 659 (1361)
..++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 6 ~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 46899999999963 3699999999999999999999999999999999999999999999886 3
Q ss_pred EEEEecCCcCCCCCHHHHhhcCCC-----CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 660 IAYVSQTSWIQSGSIRDNILYGKP-----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 660 iayv~Q~~~i~~~ti~eni~~g~~-----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++|++|++.+++.|++||+.++.. .++++..+.++.+++.++ ....++.+||||||||++||||+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT----------ILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChH----------HhcCCcccCCHHHHHHHHHHHHH
Confidence 899999999888899999986421 123344556666655321 12366789999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEe-CCeEEEecChH
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLE-GGQITQSGNYQ 803 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~-~G~i~~~g~~~ 803 (1361)
+++|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999988776554433 4889999999999998899999994 66667777764
No 234
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-35 Score=331.83 Aligned_cols=198 Identities=28% Similarity=0.390 Sum_probs=166.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999964 3699999999999999999999999999999999999999999998865
Q ss_pred ---eEEEEecCCcCCC-CCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ---SIAYVSQTSWIQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ---~iayv~Q~~~i~~-~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.++. .|++||+.++. ... .++..+.++..++...+ ...+.+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA-----------DRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHH
Confidence 3899999997764 69999997421 111 22344455555554333 3456799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999887655444458999999999999876 899999999999999998876
Q ss_pred H
Q 000671 806 L 806 (1361)
Q Consensus 806 ~ 806 (1361)
.
T Consensus 229 ~ 229 (242)
T PRK11124 229 T 229 (242)
T ss_pred c
Confidence 4
No 235
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=336.17 Aligned_cols=206 Identities=22% Similarity=0.362 Sum_probs=171.3
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g-------- 658 (1361)
+..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 346999999999964 358999999999999999999999999999999999987 5899998865
Q ss_pred -------eEEEEecCCcCCCCCHHHHhhcCCCC---C---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -------SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -------~iayv~Q~~~i~~~ti~eni~~g~~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.++..|++||+.++... + +++..++++.+++...++ .....++.+||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHH
Confidence 38999999988778999999986432 1 233445555555533222 123466789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeC-----------
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG----------- 793 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~----------- 793 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. ||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999999999988765443 457899999999998865 899999996
Q ss_pred CeEEEecChHHHHhc
Q 000671 794 GQITQSGNYQELLLA 808 (1361)
Q Consensus 794 G~i~~~g~~~~l~~~ 808 (1361)
|++++.|+.+++.+.
T Consensus 240 g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 240 GYLVEFNETKKIFNS 254 (269)
T ss_pred ceEEEeCCHHHHHhC
Confidence 678999999998653
No 236
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=335.71 Aligned_cols=205 Identities=26% Similarity=0.379 Sum_probs=170.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g--------- 658 (1361)
..++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36899999999963 3689999999999999999999999999999999999975 799998765
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. .+.+ +..++++.+++..++. ....+++.+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 3899999998888999999987531 2222 2344555555532221 123467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988765544 457999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+.++
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8643
No 237
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=335.70 Aligned_cols=208 Identities=23% Similarity=0.358 Sum_probs=175.0
Q ss_pred CCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC------
Q 000671 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------ 658 (1361)
Q Consensus 590 ~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g------ 658 (1361)
.....++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|.|+++ |++|+|.++|
T Consensus 16 ~~~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 16 EEEIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CCCeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 34457999999999963 469999999999999999999999999999999999986 5899998775
Q ss_pred ---------eEEEEecCCcCCCCCHHHHhhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 ---------~iayv~Q~~~i~~~ti~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.++|++|++.++..|++||+.++.. .+ +++..++++.+++.+++. +..++.+.+||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS 165 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLS 165 (267)
T ss_pred cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCC
Confidence 3899999998888899999987532 11 233455666666654332 12346788999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
||||||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999988765544 457899999999999865 8999999999999999
Q ss_pred ChHHHHhc
Q 000671 801 NYQELLLA 808 (1361)
Q Consensus 801 ~~~~l~~~ 808 (1361)
+++++...
T Consensus 245 ~~~~~~~~ 252 (267)
T PRK14237 245 KTRNIFTN 252 (267)
T ss_pred CHHHHhcC
Confidence 99988653
No 238
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.2e-35 Score=316.47 Aligned_cols=166 Identities=34% Similarity=0.593 Sum_probs=151.4
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~------------iay 662 (1361)
++++|++++|+.. +.++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999753 236999999999999999999999999999999999999999999999872 899
Q ss_pred EecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000671 663 VSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1361)
Q Consensus 663 v~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1361)
++|+|++++.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998889999998 45799999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEec
Q 000671 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1361)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 800 (1361)
|||||++||+++.+.+++.+.+. .+++|+|++||+++.++.+|++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999988766544 4689999999999999889999999999998754
No 239
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.2e-35 Score=344.54 Aligned_cols=188 Identities=23% Similarity=0.382 Sum_probs=162.6
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEEEecCCcCCC-CCHHH
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVSQTSWIQS-GSIRD 676 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iayv~Q~~~i~~-~ti~e 676 (1361)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+||+||++.++. .|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4689999999999999999999999999999999999999999999987 3899999987764 69999
Q ss_pred HhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000671 677 NILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1361)
Q Consensus 677 ni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~sa 749 (1361)
|+.+... .. .++.+++++.+++....+ .+..+||||||||++||||++++|++++|||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9986421 11 234666777777754433 46678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 750 lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999987665554568999999999999876 899999999999999999988643
No 240
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=334.93 Aligned_cols=204 Identities=25% Similarity=0.427 Sum_probs=170.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCC---ccC--CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---IPK--ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~---~~~--~~G~v~~~g---------- 658 (1361)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+ .++ ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5889999999964 3589999999999999999999999999999999997 454 589998765
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|+||++.+++.|++||+.++.. .+ +++.+++++.+++.++++ +...+++.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 3899999998888899999987532 11 223455666666643332 123467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999988766554 457999999999999865 89999999999999999999
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+.++
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8654
No 241
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.1e-35 Score=328.25 Aligned_cols=196 Identities=26% Similarity=0.395 Sum_probs=159.2
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68899999996431 12689999999999999999999999999999999999999999998865
Q ss_pred -eEEEEecCCc--C-CCCCHHHHhhcCCC-----CCHHHH----HHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -SIAYVSQTSW--I-QSGSIRDNILYGKP-----MDKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -~iayv~Q~~~--i-~~~ti~eni~~g~~-----~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++. + .+.|++||+.++.. .+++.. .+.++.+++.. .....++.+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 3899999983 3 46799999976421 111111 13334444421 123366789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999988766554444 8999999999999875 8999999999998754
No 242
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-35 Score=326.32 Aligned_cols=198 Identities=27% Similarity=0.436 Sum_probs=169.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|+.. ..|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 6799999999632 2399999999999999999999999999999999999999999887 38999
Q ss_pred ecCCcCCC-CCHHHHhhcCCC----CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQS-GSIRDNILYGKP----MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~~-~ti~eni~~g~~----~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++.++. .|++||+.++.. .. +++..++++..++.+.++ ....+||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-----------RLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 99987765 599999987531 11 334666777777765544 345689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
++|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999998876655444 38899999999999876 899999999999999999988754
No 243
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.5e-35 Score=333.97 Aligned_cols=200 Identities=28% Similarity=0.423 Sum_probs=169.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
|+++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999964 3699999999999999999999999999999999999999999998765
Q ss_pred ----------eEEEEecCCcCC-CCCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 659 ----------SIAYVSQTSWIQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 659 ----------~iayv~Q~~~i~-~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
.++|++|++.++ ..|++||+.++. ..+ .++..+.++..++.+.+ .+.+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-----------DHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------hcChhh
Confidence 389999998776 579999998742 122 23345556666664433 256678
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
||||||||++||||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+.. +|++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999988766554443 8999999999999865 8999999999999
Q ss_pred EecChHHHHhc
Q 000671 798 QSGNYQELLLA 808 (1361)
Q Consensus 798 ~~g~~~~l~~~ 808 (1361)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999988654
No 244
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.5e-35 Score=334.68 Aligned_cols=199 Identities=27% Similarity=0.409 Sum_probs=169.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 678999999964 3699999999999999999999999999999999999999999999877 389
Q ss_pred EEecCCc-CCCCCHHHHhhcCCC-C----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 662 YVSQTSW-IQSGSIRDNILYGKP-M----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 662 yv~Q~~~-i~~~ti~eni~~g~~-~----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
|++|++. .+..|++||+.++.. . +.++..++++.+++.+..+ .++.+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-----------RDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHH
Confidence 9999985 467899999987531 0 1124455666666643322 567789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999887665544458899999999999965 89999999999999999988754
No 245
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-35 Score=332.65 Aligned_cols=204 Identities=28% Similarity=0.395 Sum_probs=170.0
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~-----~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5889999999964 35999999999999999999999999999999999999987 69997754
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCCC----CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++... .+ ++.+++++..++.+.++ .....++.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 39999999998888999999886321 11 22333444444433222 123467889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999987755443 468999999999999876 79999999999999999988
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 8643
No 246
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-35 Score=342.74 Aligned_cols=206 Identities=20% Similarity=0.313 Sum_probs=172.7
Q ss_pred cEEEEeeEEEeCCCC-------CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------
Q 000671 594 SVKIQEGNFSWDPEL-------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------- 658 (1361)
.++++|++++|+... ...+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 589999999996421 24689999999999999999999999999999999999999999998876
Q ss_pred --------eEEEEecCCc--C-CCCCHHHHhhcC----CCCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 659 --------SIAYVSQTSW--I-QSGSIRDNILYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 659 --------~iayv~Q~~~--i-~~~ti~eni~~g----~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
+|+|++|+|. + ...|+.+|+..+ .... .++..++++.++|.++. ....+.+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH----------YDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH----------hcCCCcc
Confidence 4999999983 3 446999998642 1122 23456667777774322 1246779
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
|||||||||+||||++.+|+++|+||||++||+.+.+++.+.+.+... .|.|+|+||||++.+.. ||+|++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999887665444 48999999999999976 8999999999999
Q ss_pred EecChHHHHhcC
Q 000671 798 QSGNYQELLLAG 809 (1361)
Q Consensus 798 ~~g~~~~l~~~~ 809 (1361)
+.|+.+++.++.
T Consensus 235 e~g~~~~~~~~p 246 (327)
T PRK11308 235 EKGTKEQIFNNP 246 (327)
T ss_pred EECCHHHHhcCC
Confidence 999999998753
No 247
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-35 Score=334.39 Aligned_cols=204 Identities=27% Similarity=0.419 Sum_probs=169.5
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~--~---~~G~v~~~g---------- 658 (1361)
.++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999964 369999999999999999999999999999999999987 3 589998765
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCCC----CHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++... +++ +..++++..++.+.+. .....++.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 38999999988888999999875321 211 2334455555543221 123467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+++.+.+.+.+.. ..+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999998765544 3457899999999999875 89999999999999999999
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+..+
T Consensus 241 ~~~~ 244 (259)
T PRK14274 241 MFSN 244 (259)
T ss_pred HhhC
Confidence 8654
No 248
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.5e-35 Score=341.71 Aligned_cols=198 Identities=24% Similarity=0.391 Sum_probs=171.0
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+||
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 789999999963 4699999999999999999999999999999999999999999999877 3999
Q ss_pred EecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
+||++.++. .|++||+.+... .+ .++.+++++..++.+.. ..+..+||||||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHHH
Confidence 999998764 599999975321 22 23456666666665433 256789999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+++|++++|||||++||+...+.+++.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999998766544 457999999999999876 89999999999999999999865
No 249
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-35 Score=332.91 Aligned_cols=204 Identities=27% Similarity=0.376 Sum_probs=172.0
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
-++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4789999999963 3589999999999999999999999999999999999875 799998865
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCCC----C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~~----~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.|+... + .+++.++++.+++.+++.. ....++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 38999999998889999999875321 1 1344566777766443322 12357789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~-~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL-KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999987755443 446899999999999876 89999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
No 250
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-35 Score=335.92 Aligned_cols=206 Identities=22% Similarity=0.329 Sum_probs=169.8
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g-------- 658 (1361)
+..++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 19 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 19 EHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 346899999999964 369999999999999999999999999999999999864 6899998765
Q ss_pred -------eEEEEecCCcCCCCCHHHHhhcCCCC----C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 -------SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 -------~iayv~Q~~~i~~~ti~eni~~g~~~----~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++.+++.|++||+.++... . +++..+.++.+++..++. ...+.++.+||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 168 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGG 168 (268)
T ss_pred cHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHH
Confidence 38999999998888999999875321 1 122334444444432211 1234678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 247 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999987755443 446899999999998765 899999999999999999
Q ss_pred HHHHhc
Q 000671 803 QELLLA 808 (1361)
Q Consensus 803 ~~l~~~ 808 (1361)
+++..+
T Consensus 248 ~~~~~~ 253 (268)
T PRK14248 248 EQIFTS 253 (268)
T ss_pred HHHHhC
Confidence 888654
No 251
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=334.04 Aligned_cols=204 Identities=27% Similarity=0.435 Sum_probs=170.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4889999999964 369999999999999999999999999999999999997 4799998766
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++..+.. .....++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCHHHH
Confidence 2899999998888999999987532 1 11 23445556555532111 112357789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++++|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. +|+|++|++|++++.|+.++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-HcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 457899999999999876 89999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8643
No 252
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.6e-35 Score=333.64 Aligned_cols=198 Identities=27% Similarity=0.440 Sum_probs=167.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC---CcEEEEcC------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG------------ 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~---~G~v~~~g------------ 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 5889999999963 46899999999999999999999999999999999999986 49998776
Q ss_pred ------eEEEEecCCcCCC-CCHHHHhhcCCC------------CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000671 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP------------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~-~ti~eni~~g~~------------~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1361)
.++|++|++.++. .|++||+.++.. .. +++.+++++..++...++ .+
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----------QR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----------CC
Confidence 2799999987665 699999987531 01 234555666666654332 46
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCC
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1361)
+.+||||||||++||||++.+|+++||||||++||+++.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999998876655443 48999999999998765 8999999999
Q ss_pred eEEEecChHHH
Q 000671 795 QITQSGNYQEL 805 (1361)
Q Consensus 795 ~i~~~g~~~~l 805 (1361)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999986
No 253
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=332.15 Aligned_cols=204 Identities=29% Similarity=0.381 Sum_probs=169.5
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4789999999964 3589999999999999999999999999999999999974 799998876
Q ss_pred ---eEEEEecCCcC-CCCCHHHHhhcCCCC-----CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ---SIAYVSQTSWI-QSGSIRDNILYGKPM-----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ---~iayv~Q~~~i-~~~ti~eni~~g~~~-----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.|||++|++.+ ++.|++||+.++... .. ++..++++.+++.+.+. ......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 38999999864 578999999875321 11 23445556665533221 112356789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999999988766554 457999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8643
No 254
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.1e-35 Score=326.83 Aligned_cols=190 Identities=24% Similarity=0.354 Sum_probs=160.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|+++.|+.+ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 6889999999432 4699999999999999999999999999999999999999999998876
Q ss_pred eEEEEecCCcC-CCCCHHHHhhcCC---CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWI-QSGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i-~~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|+|.+ ++.|++||+.++. ..+. ++.++.++..++.+.++ ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 38999999875 6789999998752 1222 23445556666554333 4567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||+|++|++|+++
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999887655544458899999999999876 7999999999986
No 255
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.5e-35 Score=326.66 Aligned_cols=196 Identities=21% Similarity=0.302 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEec
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------~iayv~Q 665 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999964 3689999999999999999999999999999999999999999999876 4899999
Q ss_pred CCcCC-CCCHHHHhhcCC---CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000671 666 TSWIQ-SGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1361)
Q Consensus 666 ~~~i~-~~ti~eni~~g~---~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1361)
++.++ +.|++||+.++. ..++++..+.++..++.+..+ .++.+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98765 479999997642 234566777788777765433 456789999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 742 lLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
+|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999887665544468899999999999865 89999999999999998654
No 256
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=332.92 Aligned_cols=204 Identities=26% Similarity=0.398 Sum_probs=169.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc--cC---CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PK---ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~--~~---~~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+. +| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 5899999999974 36999999999999999999999999999999999985 36 589998865
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++...+. +..++++.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 3899999999888999999986521 1 11 23344555555543222 123467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL-KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH-hhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988765543 456899999999998765 89999999999999999999
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8654
No 257
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=331.41 Aligned_cols=204 Identities=28% Similarity=0.427 Sum_probs=169.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|+++.|+. .++++|+||+|++||+++|+|+||||||||+++|+|+.++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5889999999974 3699999999999999999999999999999999998763 699998875
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. . + +++..++++.+++.+++.. ...+.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 3899999998878999999987532 1 1 2234445555555433321 23467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987655443 457899999999998866 89999999999999999988
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 7643
No 258
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-35 Score=331.76 Aligned_cols=194 Identities=26% Similarity=0.416 Sum_probs=164.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEecC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQT 666 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------~iayv~Q~ 666 (1361)
++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 678999999964 3699999999999999999999999999999999999999999999877 38999999
Q ss_pred CcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 667 SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 667 ~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
+.++. .|++||+.++.. .. .++..++++.+++...++ .++.+||||||||++||||++.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 87765 699999987521 22 234566677766654333 456789999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEe--CCeEEEecCh
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 802 (1361)
+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999998876655433 48999999999999866 89999998 5999987654
No 259
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-35 Score=310.29 Aligned_cols=206 Identities=29% Similarity=0.443 Sum_probs=171.1
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
-++++|++-.|.. .++|+++||++++||+++++|+||+||||||++|.|..++.+|+|.++| .
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4688999999975 4699999999999999999999999999999999999999999999988 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCCCCCHH-HHHH--HHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGKPMDKA-RYDK--AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~~~~~~-~~~~--~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
|+||||...+| +.||+||+..|....+. +..+ .-+...+-+.+.. ....++.+|||||+|-++|||||+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lke-------r~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKE-------RRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHH-------HhcCcccCCChHHHHHHHHHHHHh
Confidence 99999998876 67999999987432211 1111 1112222232222 234788999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHH-hhcCeEEEEeCCeEEEecChHHHHhcC
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
++|++++||||+.||-|...++||+.+.+...+ +-||++|.++..+. +-+||.+||++|+|+.+|+.+++.++.
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999999877665544 67999999999985 458999999999999999999998654
No 260
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-35 Score=345.73 Aligned_cols=198 Identities=28% Similarity=0.428 Sum_probs=170.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
+++ |++++|+.. .+ |+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 455 788888642 23 89999999999999999999999999999999999999998765
Q ss_pred -eEEEEecCCcCC-CCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 659 -~iayv~Q~~~i~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
.++|++|++.++ +.|++||+.|+.. ...++.+++++.+++.+.++ .++.+|||||||||+||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-----------RYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHHHHH
Confidence 389999999876 4699999998743 33456777888887765443 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
.+|+++||||||++||+...+.+.+.+.....+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999988776554444 7899999999998765 8999999999999999999998654
No 261
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=6.5e-35 Score=332.94 Aligned_cols=206 Identities=19% Similarity=0.314 Sum_probs=171.0
Q ss_pred cEEEEeeEEEeCCC------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000671 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------- 658 (1361)
.++++|++++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 58999999999631 124699999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEecCCc--C-CCCCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 ----SIAYVSQTSW--I-QSGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 ----~iayv~Q~~~--i-~~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++. + ...|+.+|+.++. ... .++..++++.+++..+.. .....+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA----------SYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH----------hcCchhcCHH
Confidence 3899999974 3 3459999987532 122 234556677777743221 1345789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999998876665444 38899999999999886 89999999999999999
Q ss_pred hHHHHhcC
Q 000671 802 YQELLLAG 809 (1361)
Q Consensus 802 ~~~l~~~~ 809 (1361)
++++....
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99987653
No 262
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4.1e-35 Score=330.57 Aligned_cols=198 Identities=22% Similarity=0.271 Sum_probs=163.0
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc--cCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~--~~~~G~v~~~g-------------- 658 (1361)
++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 468999999963 36899999999999999999999999999999999995 79999999876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCCC----------CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCC-CCCh
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGKP----------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLSG 722 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~~----------~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~LSg 722 (1361)
.++|++|++.++. .|++||+.+... .+ .++..++++.+++..++. ..+.. +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFL----------NRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhc----------ccccccCcCH
Confidence 1899999987754 599999976321 11 123444555555543221 13333 5999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh--cCeEEEEeCCeEEEec
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~g 800 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999887665544468999999999999876 7999999999999999
Q ss_pred ChHHH
Q 000671 801 NYQEL 805 (1361)
Q Consensus 801 ~~~~l 805 (1361)
+++++
T Consensus 228 ~~~~~ 232 (243)
T TIGR01978 228 DVELA 232 (243)
T ss_pred CHHHh
Confidence 88765
No 263
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.8e-35 Score=325.09 Aligned_cols=188 Identities=29% Similarity=0.437 Sum_probs=159.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------~ 659 (1361)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999964 3699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
++|++|++.++. .|++||+.++. ..+. ++..++++.+++...++ .+..+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-----------AYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------hCccccCHHHHHHHHH
Confidence 899999998764 79999998752 2222 23455566666654333 4567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999887665544468999999999999876 899999999975
No 264
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-35 Score=331.99 Aligned_cols=204 Identities=27% Similarity=0.394 Sum_probs=171.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999964 368999999999999999999999999999999999976 4799998865
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCCC---C---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.++|++|++.+++.|++||+.++... . +++..++++.+++..++.. ..+.++.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 38999999988878999999876421 1 2344555666666544432 1346788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEe---------CCeEE
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE---------GGQIT 797 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~i~ 797 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999987655443 446899999999999876 89999998 89999
Q ss_pred EecChHHHHhc
Q 000671 798 QSGNYQELLLA 808 (1361)
Q Consensus 798 ~~g~~~~l~~~ 808 (1361)
+.|+.+++...
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999998654
No 265
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-35 Score=341.06 Aligned_cols=208 Identities=20% Similarity=0.350 Sum_probs=170.4
Q ss_pred cEEEEeeEEEeCCCCC-CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc----CCCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~----~~~G~v~~~g---------- 658 (1361)
.++++|++++|+.+.. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999975322 358999999999999999999999999999999999997 4899999877
Q ss_pred -------eEEEEecCCc---CCCCCHHHHhhcC----CCCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW---IQSGSIRDNILYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~---i~~~ti~eni~~g----~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.|+|++|+|. ....|+.+++... .... .++..+.++..+|.+.. ...+..+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence 2899999984 2446887766432 1112 23455666666664211 1134677899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
||||||||+||||++.+|+++|+||||++||+.++..+.+.+..... .|.|+|+||||++.+.. ||+|++|++|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887665443 48999999999999865 89999999999999
Q ss_pred ecChHHHHhcC
Q 000671 799 SGNYQELLLAG 809 (1361)
Q Consensus 799 ~g~~~~l~~~~ 809 (1361)
.|+.+++.++.
T Consensus 235 ~g~~~~~~~~p 245 (326)
T PRK11022 235 TGKAHDIFRAP 245 (326)
T ss_pred ECCHHHHhhCC
Confidence 99999998653
No 266
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-35 Score=333.11 Aligned_cols=205 Identities=24% Similarity=0.370 Sum_probs=169.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g--------- 658 (1361)
..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 36999999999974 358999999999999999999999999999999999987 6999998876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC---C-CHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~---~-~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
.+||++|++.++..|++||+.++.. . +++ +..+.++..++..++. ....+++.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 3899999998888899999987531 1 111 1233333333322222 12346788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||++||||++.+|+++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE-LKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH-HHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999998875544 3457899999999999875 8999999999999999999
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++..+
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 88654
No 267
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=5e-35 Score=309.62 Aligned_cols=161 Identities=26% Similarity=0.441 Sum_probs=146.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCCC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~~ 672 (1361)
|+++|++++|+.+ +++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999643 4699999999999999999999999999999999999999999999987 79999999998889
Q ss_pred CHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q 000671 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1361)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~ 752 (1361)
|++||+.++ ++.+||||||||++||||++++|++++|||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999864 2468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCC
Q 000671 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1361)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1361)
++.+.+.+.+.+. ++|+|++||+.+....||++++|++|
T Consensus 125 ~~~~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 125 ESEDRLYQLLKEL---GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHHHh---CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 9999987755432 58999999999887779999999876
No 268
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-35 Score=331.39 Aligned_cols=203 Identities=27% Similarity=0.404 Sum_probs=168.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-----------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG----------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g----------- 658 (1361)
-+++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468899999963 468999999999999999999999999999999999986 4799998866
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC---C--CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M--DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~---~--~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. . +. ++..++++..++.+++. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 3899999998888899999987521 1 11 22344555555543221 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987655443 468999999999999876 89999999999999999988
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 8654
No 269
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1e-34 Score=327.47 Aligned_cols=199 Identities=26% Similarity=0.398 Sum_probs=172.5
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCC
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~ 671 (1361)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 4889999999974 3699999999999999999999999999999999999999999999987 5999999986643
Q ss_pred ---CCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000671 672 ---GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1361)
Q Consensus 672 ---~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1361)
.|+++|+.+.....+++..++++.+++.+.++ .+..+||||||||++||||++.+|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 48999987654445667788888888865543 4567899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 749 AVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 749 alD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+||+.+.+.+++.+.....+ ++|+|++||+++.+.. ||+|++|++ ++++.|+++++.+
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999988766554444 8999999999999865 899999965 7999999998864
No 270
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-35 Score=332.57 Aligned_cols=207 Identities=24% Similarity=0.391 Sum_probs=172.5
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------- 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g------- 658 (1361)
....++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 22 ~~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 22 EQTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CCcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3456999999999964 369999999999999999999999999999999999987 4899998765
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
.++|++|++.+++.|++||+.++.. . . +++..++++.+++.+++. +..++++.+|||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 171 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSG 171 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCH
Confidence 4899999998887899999987522 1 1 123455555555544332 123567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|++++|||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-KSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999987765544 357899999999999765 89999999999999999
Q ss_pred hHHHHhc
Q 000671 802 YQELLLA 808 (1361)
Q Consensus 802 ~~~l~~~ 808 (1361)
++++...
T Consensus 251 ~~~~~~~ 257 (272)
T PRK14236 251 TDTLFTS 257 (272)
T ss_pred HHHHhcC
Confidence 9887643
No 271
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-35 Score=330.60 Aligned_cols=204 Identities=26% Similarity=0.373 Sum_probs=168.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4789999999964 3599999999999999999999999999999999999987 499998765
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhhcCCC---C--CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M--DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~-~ti~eni~~g~~---~--~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++.++. .|++||+.++.. . .. ++..++++..++..++.. ....++.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHH
Confidence 3899999998775 599999987521 1 12 223444554444332211 234677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988766544 456899999999999765 899999999999999999
Q ss_pred HHHHhc
Q 000671 803 QELLLA 808 (1361)
Q Consensus 803 ~~l~~~ 808 (1361)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14267 233 RKVFEN 238 (253)
T ss_pred HHHHhC
Confidence 988653
No 272
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.9e-35 Score=312.18 Aligned_cols=160 Identities=38% Similarity=0.598 Sum_probs=146.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999743 24699999999999999999999999999999999999999999999876 489
Q ss_pred EEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000671 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1361)
Q Consensus 662 yv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1361)
|++|++++++.|++||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999998 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeE
Q 000671 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1361)
Q Consensus 742 lLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1361)
||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999987765544468999999999999888999999999974
No 273
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=9.8e-35 Score=325.86 Aligned_cols=199 Identities=33% Similarity=0.444 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|+. +++|+|+||++.+||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 468999999974 3699999999999999999999999999999999999999999998875 48999
Q ss_pred ecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
||+|.++. .|++||+.++.. .+ .++..++++..++.+..+ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99998775 599999987542 12 223445555555543332 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++|++++|||||++||+++.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999988766544444 7999999999999876 89999999999999999998864
No 274
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1e-34 Score=320.57 Aligned_cols=190 Identities=25% Similarity=0.419 Sum_probs=162.4
Q ss_pred EEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEEe
Q 000671 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVS 664 (1361)
Q Consensus 596 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv~ 664 (1361)
+++|+++.|+. .++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 2 ~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (213)
T TIGR01277 2 ALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF 76 (213)
T ss_pred eEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEe
Confidence 68999999962 46799999999999999999999999999999999999999999876 389999
Q ss_pred cCCcCCC-CCHHHHhhcCC-C-C-----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 000671 665 QTSWIQS-GSIRDNILYGK-P-M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1361)
Q Consensus 665 Q~~~i~~-~ti~eni~~g~-~-~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1361)
|+|.++. .|++||+.++. + . ++++.+++++.+++.+..+ ....+||||||||++||||++.
T Consensus 77 q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-----------RLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred ccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhh-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 9998765 69999998642 1 1 1335666777777764443 3456899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 737 ~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
+|++++|||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999998876665444 37899999999999875 89999999999998874
No 275
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-35 Score=329.42 Aligned_cols=204 Identities=26% Similarity=0.382 Sum_probs=169.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4789999999963 3689999999999999999999999999999999999874 899998865
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.++..|++||+.++.. . .+ ++.++.++..++..++. ...++++.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 3999999998888999999987521 1 11 12334445455543322 123467889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL-SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999987665543 457899999999998765 89999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14262 232 IVER 235 (250)
T ss_pred HHhC
Confidence 8653
No 276
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-35 Score=325.80 Aligned_cols=200 Identities=31% Similarity=0.418 Sum_probs=170.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
+.++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 468999999974 3699999999999999999999999999999999999999999999876 48999
Q ss_pred ecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++..+. .|++||+.++.. .+ ++++.++++..++.+.++ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-----------RKPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99998774 599999986531 12 234556666666654443 455789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
.+|+++||||||++||+.+.+.+.+.+.....+ ++|+|++||+++.++. ||++++|++|++.+.|+.+++...
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999988766544333 8999999999999876 899999999999999998887643
No 277
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=328.21 Aligned_cols=205 Identities=24% Similarity=0.369 Sum_probs=170.3
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~--~---~~G~v~~~g--------- 658 (1361)
+.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46899999999973 369999999999999999999999999999999999986 3 689998876
Q ss_pred ------eEEEEecCCcCCC-CCHHHHhhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++.++. .|++||+.++.. .+. ++..+.++.+++...+.. ..+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 2899999988766 699999986421 121 334556666666443321 123567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL-KEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999987765443 456899999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000671 803 QELLLA 808 (1361)
Q Consensus 803 ~~l~~~ 808 (1361)
+++...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 988654
No 278
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.2e-34 Score=329.31 Aligned_cols=202 Identities=23% Similarity=0.326 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 5899999999964 3699999999999999999999999999999999999999999998765
Q ss_pred -------eEEEEecCCc---CCCCCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW---IQSGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~---i~~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.++|++|++. ..+.|++|||.+.. ..+ .++..++++.+++.. +..++++.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~L 152 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTF 152 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccC
Confidence 2899999984 23568999986421 111 112233344444321 2234678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+ |.|+|++||+++.+.. ||+|++|++|++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999988766544333 8899999999999975 89999999999999
Q ss_pred ecChHHHHhc
Q 000671 799 SGNYQELLLA 808 (1361)
Q Consensus 799 ~g~~~~l~~~ 808 (1361)
.|+++++..+
T Consensus 233 ~~~~~~~~~~ 242 (258)
T PRK11701 233 SGLTDQVLDD 242 (258)
T ss_pred eCCHHHHhcC
Confidence 9999988644
No 279
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-34 Score=324.70 Aligned_cols=199 Identities=31% Similarity=0.454 Sum_probs=170.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|+++.|.. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 468899999963 279999999999999999999999999999999999999999999987 48999
Q ss_pred ecCCcCC-CCCHHHHhhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQ-SGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~-~~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++.++ ..|++||+.++... + .++..+.++.+++.+.++ ++..+||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHHHH
Confidence 9998776 57999999875321 1 223456677777765544 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
.+|++++|||||++||+.+.+++.+.+..... +++|+|++||+++.++. +|++++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999998876655433 38999999999999876 899999999999999999887653
No 280
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=327.50 Aligned_cols=203 Identities=25% Similarity=0.381 Sum_probs=169.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999973 4699999999999999999999999999999999999986 599998866
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC---CC-H----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---MD-K----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~---~~-~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.++..|++||+.++.. .. + ++..+.++..++.+++. +....++.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 2899999998888999999987532 11 1 23344455555544332 1234677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-KKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988755443 446899999999999876 899999999999999998887
Q ss_pred Hh
Q 000671 806 LL 807 (1361)
Q Consensus 806 ~~ 807 (1361)
..
T Consensus 232 ~~ 233 (249)
T PRK14253 232 FS 233 (249)
T ss_pred Hc
Confidence 54
No 281
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=340.12 Aligned_cols=207 Identities=19% Similarity=0.295 Sum_probs=170.6
Q ss_pred cEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc----CCCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~----~~~G~v~~~g---------- 658 (1361)
.++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ +++|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 478999999996432 2468999999999999999999999999999999999986 5899999876
Q ss_pred -------eEEEEecCCcC---CCCCHHHHhhcCC---C-----C-----CHHHHHHHHHHhcchHHHhcCCCCCCccccC
Q 000671 659 -------SIAYVSQTSWI---QSGSIRDNILYGK---P-----M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQ 715 (1361)
Q Consensus 659 -------~iayv~Q~~~i---~~~ti~eni~~g~---~-----~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~ 715 (1361)
.|+|++|+|.. ...||.+|+.+.. . . ..++..+.++..+|.+..+ ...+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 39999999852 3569999996421 0 0 1234556667766653111 1235
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeC
Q 000671 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG 793 (1361)
Q Consensus 716 ~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1361)
.+.+|||||||||+||||++.+|+++|+||||++||+.+++++.+.+..... .|.|+|+||||++.+.. ||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 6789999999999999999999999999999999999999999877665444 38999999999999976 899999999
Q ss_pred CeEEEecChHHHHhc
Q 000671 794 GQITQSGNYQELLLA 808 (1361)
Q Consensus 794 G~i~~~g~~~~l~~~ 808 (1361)
|+|++.|+.+++..+
T Consensus 235 G~ive~g~~~~i~~~ 249 (330)
T PRK15093 235 GQTVETAPSKELVTT 249 (330)
T ss_pred CEEEEECCHHHHHhC
Confidence 999999999998764
No 282
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=330.58 Aligned_cols=200 Identities=26% Similarity=0.419 Sum_probs=167.5
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYV 663 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------~iayv 663 (1361)
.++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 58999999999632 4699999999999999999999999999999999999999999999887 39999
Q ss_pred ecCCcC---CCCCHHHHhhcCCC-----------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 664 SQTSWI---QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 664 ~Q~~~i---~~~ti~eni~~g~~-----------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
+|++.+ ...++++|+.++.. .++++..++++..++....+ .+..+||||||||++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----------RQIGELSGGQKKRVF 152 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHH
Confidence 999854 34579999875421 01234455666666654332 456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+++++ +|++++.|+++++..
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999999999999999999999999887665544468999999999998765 8999777 899999999988753
No 283
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=328.92 Aligned_cols=205 Identities=27% Similarity=0.399 Sum_probs=172.8
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g-------- 658 (1361)
.+.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 356999999999974 3699999999999999999999999999999999999875 799998754
Q ss_pred ---------eEEEEecCCcCCCCCHHHHhhcCCC---C-----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP---M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 ---------~iayv~Q~~~i~~~ti~eni~~g~~---~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.++|++|++.++..|++||+.++.. . .+++..++++.+++.+++. +..++.+.+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3899999999888899999987531 1 1244556666666654333 12346778999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
||||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999988765543 446899999999999865 8999999999999999
Q ss_pred ChHHHHh
Q 000671 801 NYQELLL 807 (1361)
Q Consensus 801 ~~~~l~~ 807 (1361)
+.+++..
T Consensus 243 ~~~~~~~ 249 (265)
T PRK14252 243 ATDTIFI 249 (265)
T ss_pred CHHHHHh
Confidence 9988764
No 284
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=327.27 Aligned_cols=204 Identities=25% Similarity=0.346 Sum_probs=169.4
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+.++ ++|+|.++|
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 3699999999999999999999999999999999998753 489998765
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCCC----CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++... +. ++..++++.+++.+++. +..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 38999999988888999999986321 11 12334445555533332 234577889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~-~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL-KKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 9999999999999999999999999999999987655443 446899999999999875 89999999999999999988
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 235 ~~~~ 238 (253)
T PRK14261 235 IFEN 238 (253)
T ss_pred HHhC
Confidence 7643
No 285
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.7e-34 Score=324.52 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=170.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC----CCcEEEEcC-----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG----------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~----~~G~v~~~g----------- 658 (1361)
.++++|++++| . .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 58999999999 2 3689999999999999999999999999999999999999 999998876
Q ss_pred eEEEEecCCc-CC--CCCHHHHhhc-----CCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSW-IQ--SGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~-i~--~~ti~eni~~-----g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|++. .+ ..|+.+|+.+ +....++++.+.++.+++.+. .+.+++.+.+||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 3999999984 33 3588888754 323334566777777666431 123446778999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+.+++...
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999998876655433 47899999999999865 899999999999999999998754
Q ss_pred C
Q 000671 809 G 809 (1361)
Q Consensus 809 ~ 809 (1361)
.
T Consensus 232 ~ 232 (254)
T PRK10418 232 P 232 (254)
T ss_pred C
Confidence 3
No 286
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.4e-34 Score=338.13 Aligned_cols=209 Identities=18% Similarity=0.360 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEeCCC-CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC---CcEEEEcC----------
Q 000671 593 RSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG---------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~---~G~v~~~g---------- 658 (1361)
..++++|++++|... ....+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 468999999999643 2346899999999999999999999999999999999999986 99998876
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHhhcC----CCCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW--I-QSGSIRDNILYG----KPMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~--i-~~~ti~eni~~g----~~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.|+|++|+|. + +..|+.+|+... ...+. ++..+.++..++ +++. ..++..+.+|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~L 162 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEF 162 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccC
Confidence 3999999983 3 456898887542 12222 233344444443 2221 2245778999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
||||||||+||||++.+|+++|+||||+|||+.++..+.+.+..... .|.|+|+||||++.+.. ||+|++|++|+|++
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999876655433 38899999999999875 89999999999999
Q ss_pred ecChHHHHhcC
Q 000671 799 SGNYQELLLAG 809 (1361)
Q Consensus 799 ~g~~~~l~~~~ 809 (1361)
.|+.+++.++.
T Consensus 243 ~g~~~~i~~~p 253 (330)
T PRK09473 243 YGNARDVFYQP 253 (330)
T ss_pred ECCHHHHHhCC
Confidence 99999998653
No 287
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=332.16 Aligned_cols=206 Identities=28% Similarity=0.448 Sum_probs=170.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g-------- 658 (1361)
+..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 345899999999964 369999999999999999999999999999999999987 6899998865
Q ss_pred -------eEEEEecCCcCCCCCHHHHhhcCCC---CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -------~iayv~Q~~~i~~~ti~eni~~g~~---~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.++..|++||+.++.. .. .++.+++++..++...+.. ..++++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHH
Confidence 3899999998887899999987421 11 2345556666665432221 23467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEE-EEeCCeEEEecChH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRIL-VLEGGQITQSGNYQ 803 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~-~l~~G~i~~~g~~~ 803 (1361)
||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|+++ +|++|+|++.|+++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~-~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL-AEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 9999999999999999999999999999999988765544 345899999999999876 89975 57999999999998
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++..+
T Consensus 266 ~~~~~ 270 (285)
T PRK14254 266 KIFEN 270 (285)
T ss_pred HHHhC
Confidence 87643
No 288
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-34 Score=325.58 Aligned_cols=209 Identities=21% Similarity=0.287 Sum_probs=172.2
Q ss_pred CcEEEEeeEEEeCCC-----------------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEE
Q 000671 593 RSVKIQEGNFSWDPE-----------------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~-----------------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~ 655 (1361)
..|+++|++..|+.. ...++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 357788887777542 224589999999999999999999999999999999999999999999
Q ss_pred EcCeEEEEecCCcCC-CCCHHHHhhcCC---CCCHHHH----HHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 656 LYGSIAYVSQTSWIQ-SGSIRDNILYGK---PMDKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 656 ~~g~iayv~Q~~~i~-~~ti~eni~~g~---~~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
++|.++|++|++.+. ..|++||+.++. .++.+.. .++++..++.+.+ ...+.+||||||||
T Consensus 83 ~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qr 151 (264)
T PRK13546 83 RNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQPVKKYSSGMRAK 151 (264)
T ss_pred ECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCCcccCCHHHHHH
Confidence 999999999998765 569999997642 2333322 2334444443322 35677999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
++||||++++|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999887765544568999999999999876 8999999999999999999988
Q ss_pred hcCchH
Q 000671 807 LAGTAF 812 (1361)
Q Consensus 807 ~~~~~~ 812 (1361)
.....|
T Consensus 232 ~~~~~~ 237 (264)
T PRK13546 232 PKYEAF 237 (264)
T ss_pred HHhHHH
Confidence 754433
No 289
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=329.78 Aligned_cols=204 Identities=24% Similarity=0.323 Sum_probs=170.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5799999999974 3699999999999999999999999999999999999985 699998866
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC----CCHHH----HHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP----MDKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~----~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.+++.|++||+.++.. ...+. ..+.++.+++...+ .+.+.+.+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHH
Confidence 3899999998888999999987532 22222 23344555543222 12234678899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL-ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988765443 345899999999999876 899999999999999999998
Q ss_pred Hhc
Q 000671 806 LLA 808 (1361)
Q Consensus 806 ~~~ 808 (1361)
.+.
T Consensus 250 ~~~ 252 (276)
T PRK14271 250 FSS 252 (276)
T ss_pred HhC
Confidence 754
No 290
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-34 Score=327.61 Aligned_cols=204 Identities=25% Similarity=0.399 Sum_probs=171.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 6899999999964 3589999999999999999999999999999999999885 489998865
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. ++ .++..++++.+++.+++... ....+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 3899999998888999999987521 12 23345666666665433321 2367789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEe-----CCeEEEe
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE-----GGQITQS 799 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~-----~G~i~~~ 799 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL-RSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999999999999988766544 446899999999999876 89999997 5999999
Q ss_pred cChHHHHhc
Q 000671 800 GNYQELLLA 808 (1361)
Q Consensus 800 g~~~~l~~~ 808 (1361)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998643
No 291
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=332.21 Aligned_cols=206 Identities=28% Similarity=0.380 Sum_probs=169.2
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g-------- 658 (1361)
+..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|+|.++|
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 346899999999964 358999999999999999999999999999999999864 4999998865
Q ss_pred -------eEEEEecCCcCCCCCHHHHhhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 -------~iayv~Q~~~i~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++.+++.|++||+.++.. . +. ++..++++..++...+.. ...+++.+||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG 186 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNALGLSGG 186 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh-------HhhCChhhCCHH
Confidence 3899999998887899999987532 1 11 223344444444321111 123677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~-~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-LRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999998875544 3446899999999999875 899999999999999999
Q ss_pred HHHHhc
Q 000671 803 QELLLA 808 (1361)
Q Consensus 803 ~~l~~~ 808 (1361)
+++..+
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 988654
No 292
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=326.92 Aligned_cols=204 Identities=27% Similarity=0.412 Sum_probs=172.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g---------- 658 (1361)
.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 469999999999999999999999999999999999864 4899998766
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|+||++++++.|++||+.++.. .++ +++.+.++.+++.+++..+ .++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 3899999999888899999987521 122 3455667777776544321 2366789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 457899999999999876 79999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14266 232 IFIN 235 (250)
T ss_pred HHhC
Confidence 8644
No 293
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-34 Score=327.91 Aligned_cols=199 Identities=27% Similarity=0.353 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC--------CcEEEEcC--------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--------SGTVNLYG-------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~--------~G~v~~~g-------- 658 (1361)
++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 678999999964 36999999999999999999999999999999999999998 99999887
Q ss_pred -----eEEEEecCCc-CCCCCHHHHhhcCCC-C----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 -----SIAYVSQTSW-IQSGSIRDNILYGKP-M----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 -----~iayv~Q~~~-i~~~ti~eni~~g~~-~----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.++|++|++. ++..|++||+.++.. . +.++.+++++..++... .+....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-----------VGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCC
Confidence 2799999975 567899999987531 1 11234555555555432 335678999
Q ss_pred hHHHHHHHHHHHHc---------cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEE
Q 000671 722 GGQKQRIQLARAVY---------NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILV 790 (1361)
Q Consensus 722 gGQkqRv~lARal~---------~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~ 790 (1361)
||||||++||||++ .+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+.. ||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 599999999999999999999998766654444 7999999999999865 899999
Q ss_pred EeCCeEEEecChHHHHh
Q 000671 791 LEGGQITQSGNYQELLL 807 (1361)
Q Consensus 791 l~~G~i~~~g~~~~l~~ 807 (1361)
|++|++++.|+.+++..
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999988754
No 294
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-34 Score=327.71 Aligned_cols=206 Identities=24% Similarity=0.361 Sum_probs=171.2
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g-------- 658 (1361)
+..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+.++ ++|+|.++|
T Consensus 18 ~~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 18 HSVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 347999999999974 3589999999999999999999999999999999999863 689998765
Q ss_pred -------eEEEEecCCcCCCCCHHHHhhcCCC---CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -------~iayv~Q~~~i~~~ti~eni~~g~~---~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. +. ++...+.++.+++...+.. ...+.+.+||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHH
Confidence 4899999998887899999987532 11 2233445555665433321 23467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEe---------CCe
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE---------GGQ 795 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~ 795 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|+ +|+
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~ 246 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-KEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGK 246 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCce
Confidence 9999999999999999999999999999999988765544 457899999999999875 89999997 899
Q ss_pred EEEecChHHHHhc
Q 000671 796 ITQSGNYQELLLA 808 (1361)
Q Consensus 796 i~~~g~~~~l~~~ 808 (1361)
+++.|+.+++..+
T Consensus 247 ~~~~g~~~~~~~~ 259 (274)
T PRK14265 247 LVEFSPTEQMFGS 259 (274)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999998654
No 295
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.8e-31 Score=319.44 Aligned_cols=437 Identities=18% Similarity=0.259 Sum_probs=302.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC-----CCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHH
Q 000671 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKK-----HSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVL 412 (1361)
Q Consensus 339 ~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~-----~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L 412 (1361)
.|..+++.++.|..|+.....|=|.-...-+-. +..-..=..+..|+..+.+... ....+....++++.-..+|
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999988755321110 1111123577888877766432 2333444445555555667
Q ss_pred HHHHHHHH---------HHHHH--HHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhchHH
Q 000671 413 FGVVGLGA---------LPGLV--LFLICGLLNVPFAKILQ----KCQS-EFMIAQDERLRSTSEILNNMKIIKLQSWEE 476 (1361)
Q Consensus 413 ~~~lG~~~---------l~gl~--v~~l~~~l~~~~~~~~~----~~q~-~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~ 476 (1361)
|...|.-+ ++|.. ++++.+++...++-++. +... +....-|-|-.++ .+..+...|-+|.-|+
T Consensus 187 w~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lv-rv~enaE~IAly~GE~ 265 (604)
T COG4178 187 WSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLV-RVRENAEAIALYRGEK 265 (604)
T ss_pred HHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH-HHHhhHHHHHHhcCcH
Confidence 75554221 22222 22223333333332222 2211 1222234455443 4667888899999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Q 000671 477 KFKSLIESRREKEFKWLSEAQL----RKAYGTVIYW---MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549 (1361)
Q Consensus 477 ~f~~~i~~~R~~El~~l~~~~~----~~~~~~~~~~---~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl 549 (1361)
.-.+++++.=..=++..++... ...++....+ ..|.++.+-- ++ .+.++-+...++-..|+.+...+
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~-----~f-~g~i~~G~lmqa~~aF~~v~ssl 339 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPR-----YF-SGQITFGGLMQAVGAFGQVHSSL 339 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHh-----hh-cCcChHHHHHHHHHHHHHHHHHH
Confidence 6655554422221222121110 0111111111 2222222211 22 36899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC---CCCc---h-hhhc--cccCCCCcEEEEeeEEEeCCCCCCCcccceeEEe
Q 000671 550 RMIPEALSIMIQVKVSFDRINAFLLDHE---LNND---D-VRRI--SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620 (1361)
Q Consensus 550 ~~lp~~i~~~~~a~vS~~RI~~fL~~~e---~~~~---~-~~~~--~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i 620 (1361)
+.+-..+..+.+=+.++.|+.+|-.+=| .++. + ..+. .... +..|.++|++..-+.+. +.+++.|+++
T Consensus 340 swfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~nl~l~~p~~~--~ll~~l~~~v 416 (604)
T COG4178 340 SWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNA-DHGITLENLSLRTPDGQ--TLLSELNFEV 416 (604)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccc-cceeEEeeeeEECCCCC--eeeccceeee
Confidence 9999999999999999999999974322 1110 0 0000 0111 57899999999987653 7899999999
Q ss_pred cCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCCCCHHHHhhcCCC---CCHHHHHHHHHH
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKA 695 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~~ti~eni~~g~~---~~~~~~~~~~~~ 695 (1361)
++||.+.|.|+||||||||+++|.|+.|--+|+|.... .+-|+||.|.++.+|.||-|.+... ++++.+.+++.+
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~ 496 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999998873 4899999999999999999999753 678999999999
Q ss_pred hcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEE
Q 000671 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775 (1361)
Q Consensus 696 ~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilv 775 (1361)
|+|.+-.+.+.+-+. -...||+|||||+++||.++++|++++|||.|||||+.++..+++.+ +..+.+.|+|-|
T Consensus 497 vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l-~~~lp~~tvISV 570 (604)
T COG4178 497 VGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL-KEELPDATVISV 570 (604)
T ss_pred cCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHH-HhhCCCCEEEEe
Confidence 999988888765443 34689999999999999999999999999999999999999998754 555688999999
Q ss_pred ccCchHHhhcCeEEEE
Q 000671 776 THQVEFLSEVDRILVL 791 (1361)
Q Consensus 776 tH~~~~l~~~d~i~~l 791 (1361)
.|+.......++.+-+
T Consensus 571 ~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 571 GHRPTLWNFHSRQLEL 586 (604)
T ss_pred ccchhhHHHHhhheee
Confidence 9998877666655544
No 296
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.5e-34 Score=328.12 Aligned_cols=209 Identities=25% Similarity=0.373 Sum_probs=170.9
Q ss_pred cEEEEeeEEEeCCC------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000671 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------- 658 (1361)
.++++|+++.|+.. .++++++|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999731 125699999999999999999999999999999999999999999998876
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHhhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~--i-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.++|++|++. + .+.|++||+.+.. ..+. ++.++.++.+++..++ .+.++.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSV----------LDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhH----------hhCCCccC
Confidence 3899999983 3 4579999986531 1121 2345566655553221 23567899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999998876554443 38899999999999976 89999999999999
Q ss_pred ecChHHHHhcCchH
Q 000671 799 SGNYQELLLAGTAF 812 (1361)
Q Consensus 799 ~g~~~~l~~~~~~~ 812 (1361)
.|+++++......+
T Consensus 233 ~g~~~~~~~~~~~~ 246 (268)
T PRK10419 233 TQPVGDKLTFSSPA 246 (268)
T ss_pred eCChhhccCCCCHH
Confidence 99999987544433
No 297
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-34 Score=325.83 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=174.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g--------- 658 (1361)
..+.+++.++.|.+ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 7 ~~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 7 IVMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred ceEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 46788899999864 3699999999999999999999999999999999999986 799998876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC---CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~---~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.+++.|++||+.++.. +. .++..++++..++..++.. ..++++.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~q 156 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQ 156 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 2899999999888999999988642 11 2456667777776554432 124677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEe--------CCeEE
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE--------GGQIT 797 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~--------~G~i~ 797 (1361)
|++||||++++|++++|||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999999998766554 457899999999998865 89999996 89999
Q ss_pred EecChHHHHhc
Q 000671 798 QSGNYQELLLA 808 (1361)
Q Consensus 798 ~~g~~~~l~~~ 808 (1361)
+.|+.+++.+.
T Consensus 236 ~~g~~~~~~~~ 246 (261)
T PRK14263 236 EMGPTAQIFQN 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998753
No 298
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.4e-34 Score=340.12 Aligned_cols=195 Identities=24% Similarity=0.389 Sum_probs=165.7
Q ss_pred eeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEE
Q 000671 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1361)
Q Consensus 599 ~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------------~ia 661 (1361)
|++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 4 ~l~~~~~~~----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 678888632 35 99999999999999999999999999999999999999998765 289
Q ss_pred EEecCCcCCC-CCHHHHhhcCCCC-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 662 YVSQTSWIQS-GSIRDNILYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 662 yv~Q~~~i~~-~ti~eni~~g~~~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
|++|++.++. .|++||+.|+... . .++.+++++..++...++ .++.+||||||||++||||++
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-----------RLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 9999998765 6999999986431 1 234566666666654333 566799999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
.+|+++||||||++||+...+.+.+.+.....+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 999999999999999999999998876655444 8999999999999865 8999999999999999999987653
No 299
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=326.55 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=167.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 5889999999964 3589999999999999999999999999999999999974 799998865
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
.++|++|++.++. .|++||+.++.. ... ++..++++..++...+. ......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 3899999987765 699999986421 111 23445555555532221 12236678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEe------CCeEE
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE------GGQIT 797 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~------~G~i~ 797 (1361)
|||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|+ +|+|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 99999999999999999999999999999999987665444 456899999999999865 89999996 89999
Q ss_pred EecChHHHHhc
Q 000671 798 QSGNYQELLLA 808 (1361)
Q Consensus 798 ~~g~~~~l~~~ 808 (1361)
+.|+++++...
T Consensus 233 ~~~~~~~~~~~ 243 (258)
T PRK14241 233 EIDDTEKIFSN 243 (258)
T ss_pred ecCCHHHHHhC
Confidence 99999988653
No 300
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=332.50 Aligned_cols=205 Identities=27% Similarity=0.445 Sum_probs=171.0
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g--------- 658 (1361)
..+.++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999974 369999999999999999999999999999999999986 6899998865
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCCC--------------------CHHHHHHHHHHhcchHHHhcCCCCCCcc
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM--------------------DKARYDKAIKACALDKDINNFDHGDLTE 712 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~~--------------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ 712 (1361)
.++|++|++.+++.|++||+.++... ..++..++++.+++..++. +.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 38999999998888999999975311 0223455556565543332 23
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeE-EE
Q 000671 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRI-LV 790 (1361)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i-~~ 790 (1361)
.++++.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++ ++
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~-~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL-AEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 45678899999999999999999999999999999999999999987765543 345899999999999876 8997 56
Q ss_pred EeCCeEEEecChHHHHhc
Q 000671 791 LEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 791 l~~G~i~~~g~~~~l~~~ 808 (1361)
|++|++++.|+++++.+.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 799999999999988643
No 301
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.6e-34 Score=320.24 Aligned_cols=196 Identities=30% Similarity=0.445 Sum_probs=159.0
Q ss_pred cEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc---CCCcEEEEcC----------e
Q 000671 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~---~~~G~v~~~g----------~ 659 (1361)
.+.++|+++.++... .+++++|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++| .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 357899999997542 3579999999999999999999999999999999999999 9999999877 3
Q ss_pred EEEEecCCcCCCC-CHHHHhhcCCCC------CHH----HHHH-HHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 660 IAYVSQTSWIQSG-SIRDNILYGKPM------DKA----RYDK-AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 660 iayv~Q~~~i~~~-ti~eni~~g~~~------~~~----~~~~-~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
++|++|++.+++. |++||+.++... .++ +..+ .++.+++.. ...+...+||||||||
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qr 151 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGERRR 151 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHHHH
Confidence 9999999987764 999999874211 111 1111 222222221 1224668999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCc-hHHh-hcCeEEEEeCCeEEEec
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV-EFLS-EVDRILVLEGGQITQSG 800 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~-~~l~-~~d~i~~l~~G~i~~~g 800 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||++ +.+. .||++++|++|++++.|
T Consensus 152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999998876655444688999999998 4554 58999999999998765
No 302
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-34 Score=324.65 Aligned_cols=204 Identities=26% Similarity=0.382 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~-----~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 36999999999999999999999999999999999999864 89998865
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhhcCCC---C-CHHH----HHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M-DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~-~ti~eni~~g~~---~-~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
.++|++|++.++. .|++||+.++.. . .++. ..+.++..++...+.. .....+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKD-------RLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhh-------hhcCCcccCCHHH
Confidence 3899999988766 699999986432 1 2222 2223333333222211 1235678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-KKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765443 457999999999999886 8999999999999999999
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14272 233 QLFTN 237 (252)
T ss_pred HHHhC
Confidence 88654
No 303
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-34 Score=325.90 Aligned_cols=205 Identities=25% Similarity=0.408 Sum_probs=171.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~-----~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|
T Consensus 7 ~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 6899999999964 35899999999999999999999999999999999999985 79887654
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. . . .++..++++..++...+.. ..++.+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 3899999988877999999986421 1 1 1234556666665433321 23467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeC-----CeEEE
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG-----GQITQ 798 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~-----G~i~~ 798 (1361)
||++||||++++|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 999999999999999999999999999999998876655433 48999999999999876 899999999 99999
Q ss_pred ecChHHHHhc
Q 000671 799 SGNYQELLLA 808 (1361)
Q Consensus 799 ~g~~~~l~~~ 808 (1361)
.|+++++.+.
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999998654
No 304
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-34 Score=324.02 Aligned_cols=204 Identities=27% Similarity=0.429 Sum_probs=167.4
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~--~---~~G~v~~~g---------- 658 (1361)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 5889999999974 369999999999999999999999999999999999865 4 589998765
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. . .+ ++..+.++.+++...+. ......+.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 3899999998888999999987521 1 11 22333444444432221 123466789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+++.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 346899999999999875 89999999999999999888
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
...+
T Consensus 234 ~~~~ 237 (252)
T PRK14255 234 MFLN 237 (252)
T ss_pred HhcC
Confidence 7644
No 305
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=303.09 Aligned_cols=202 Identities=23% Similarity=0.378 Sum_probs=168.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.+..+|...+|.. +++.+++||++++||+|++.||||+||||.+.++.|+.+|++|+|.+++ .
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4677888888975 4699999999999999999999999999999999999999999999987 3
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCCC---CHH------HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKPM---DKA------RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~~---~~~------~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
|||+||+|.+|. .||+|||..-.++ +.+ +.++.++...+..-- ..++.+||||||+|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr-----------~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-----------DSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh-----------cCcccccccchHHHHH
Confidence 999999999985 5999999754332 111 223344444333221 2678999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCch-HHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE-FLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||||..+|+.+||||||+|+||.....|-+.+.....+|--|+++-|++. .+.-|||.+++.+|++..+|+++|+.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999986544444457889999999986 4777999999999999999999999865
Q ss_pred C
Q 000671 809 G 809 (1361)
Q Consensus 809 ~ 809 (1361)
.
T Consensus 230 ~ 230 (243)
T COG1137 230 E 230 (243)
T ss_pred h
Confidence 3
No 306
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.1e-34 Score=318.24 Aligned_cols=191 Identities=27% Similarity=0.420 Sum_probs=162.0
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|+++.|+++. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996432 24699999999999999999999999999999999999999999998875
Q ss_pred -eEEEEecCCcCCC-CCHHHHhhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 -~iayv~Q~~~i~~-~ti~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
.++|++|++.++. .|+.||+.++.. .+ .+++.++++.+++.+.++ ..+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-----------YYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence 3899999997765 799999987532 22 234566777777765444 45568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeE
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1361)
+||||++.+|+++|||||+++||+.+++.+.+.+..... +++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999998876554433 48999999999997767999999999986
No 307
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-34 Score=317.00 Aligned_cols=185 Identities=31% Similarity=0.439 Sum_probs=156.7
Q ss_pred eeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEE
Q 000671 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1361)
Q Consensus 599 ~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------------~ia 661 (1361)
|++++|++. .+ |+||++++ |+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 5 ~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 788888753 23 99999999 99999999999999999999999999999998865 389
Q ss_pred EEecCCcCC-CCCHHHHhhcCCCC-----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 662 YVSQTSWIQ-SGSIRDNILYGKPM-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 662 yv~Q~~~i~-~~ti~eni~~g~~~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
|++|++.++ +.|++||+.++... ++++..+.++..++....+ .++.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHHHHh
Confidence 999999876 56999999875421 1234566666666654332 567899999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
.+|++++|||||++||+.+.+.+++.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999988766554444 8899999999999865 8999999999998765
No 308
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.9e-34 Score=310.05 Aligned_cols=174 Identities=26% Similarity=0.428 Sum_probs=151.3
Q ss_pred cEEEEeeEEEeCCC---CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc--cCCCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPE---LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~---~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~--~~~~G~v~~~g---------- 658 (1361)
.++++|++++|+.. ...++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 48899999999752 1246999999999999999999999999999999999999 99999998876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
.++|++|++.++. .|++||+.++... . .||||||||++||||++.+
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------~---------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL------------------R---------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh------------------c---------------cCCHHHHHHHHHHHHHHcC
Confidence 4899999987764 6999999753210 0 7999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCch-HHhh-cCeEEEEeCCeEEEec
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE-FLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~l~~-~d~i~~l~~G~i~~~g 800 (1361)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++ .+.. +|++++|++|++++.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999988766554446899999999996 5654 8999999999998654
No 309
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=8.2e-34 Score=321.83 Aligned_cols=202 Identities=24% Similarity=0.320 Sum_probs=165.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
.++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 5889999999964 3589999999999999999999999999999999999999999998864
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHhhcC-----CC-CC--HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW--I-QSGSIRDNILYG-----KP-MD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~--i-~~~ti~eni~~g-----~~-~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.++|++|++. + ...|+.+|+.+. .. .. .++..+.++..++.. +.....+.+|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~L 149 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAF 149 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhc
Confidence 2799999974 2 346889998542 11 11 122333344333321 2234677899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+..... .+.|+|++||+++.+.. +|++++|++|++++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998876655443 48999999999999875 89999999999999
Q ss_pred ecChHHHHhc
Q 000671 799 SGNYQELLLA 808 (1361)
Q Consensus 799 ~g~~~~l~~~ 808 (1361)
.|+.+++..+
T Consensus 230 ~~~~~~~~~~ 239 (253)
T TIGR02323 230 SGLTDQVLDD 239 (253)
T ss_pred ECCHHHHhcC
Confidence 9999888643
No 310
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.9e-34 Score=317.59 Aligned_cols=189 Identities=24% Similarity=0.371 Sum_probs=157.1
Q ss_pred cccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC----CCcEEEEcC-----------eEEEEecCCc-CC--CCC
Q 000671 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG-----------SIAYVSQTSW-IQ--SGS 673 (1361)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~----~~G~v~~~g-----------~iayv~Q~~~-i~--~~t 673 (1361)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++. .+ ..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999876 4999999985 23 369
Q ss_pred HHHHhhcCCC----CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000671 674 IRDNILYGKP----MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1361)
Q Consensus 674 i~eni~~g~~----~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1361)
++||+.+... .. .+++.+.++.+++.+ + .+.....+.+||||||||++||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999865321 11 234556666666641 1 0123466789999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|++||+.+.+.+.+.+.+... .++|+|++||+++.+.. +|++++|++|++.+.|+++++...
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999998876655444 37899999999999875 899999999999999999998754
No 311
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-34 Score=310.45 Aligned_cols=180 Identities=22% Similarity=0.308 Sum_probs=151.3
Q ss_pred cEEEEeeEEEeCCC-CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc---CCCcEEEEcC-----------
Q 000671 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~---~~~G~v~~~g----------- 658 (1361)
.+.++|++|.|+.. .+.++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 36899999999864 34579999999999999999999999999999999999999 8999998876
Q ss_pred -eEEEEecCCcCCC-CCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1361)
Q Consensus 659 -~iayv~Q~~~i~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1361)
.++|++|++.++. .|++||+.++.... ..++...||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 3899999987665 69999998753210 124567899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcc-CchHHh-hcCeEEEEeCCeEEEec
Q 000671 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTH-QVEFLS-EVDRILVLEGGQITQSG 800 (1361)
Q Consensus 737 ~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH-~~~~l~-~~d~i~~l~~G~i~~~g 800 (1361)
+|+++||||||++||+.+++.+.+.+.....+ +.|+|+++| +.+.+. .||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999988766554443 567666655 556665 58999999999998754
No 312
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-34 Score=303.29 Aligned_cols=159 Identities=28% Similarity=0.500 Sum_probs=144.4
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE
Confidence 468899999964 3589999999999999999999999999999999999999999998876 3899
Q ss_pred EecCCcCCC-CCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000671 663 VSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1361)
Q Consensus 663 v~Q~~~i~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1361)
++|++.++. .|++||+. ||||||||++||||++.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 999988765 59999984 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 742 lLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
||||||++||+.+.+.+.+.+.....+|.|+|++||+.+++.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999988766555568899999999999885 899999999974
No 313
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=336.63 Aligned_cols=206 Identities=22% Similarity=0.240 Sum_probs=172.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcC-CC
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QS 671 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i-~~ 671 (1361)
..++++|++|.|+.+...++|+|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|.-.++++.+.+ ..
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~ 99 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCC
Confidence 35889999999976544579999999999999999999999999999999999999999999999976666666544 45
Q ss_pred CCHHHHhhcCC---CCCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000671 672 GSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1361)
Q Consensus 672 ~ti~eni~~g~---~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1361)
.|++||+.++. ..+.+ +..++++.+++.+.++ .++.+||||||||++||||++.+|+++|||
T Consensus 100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 69999997642 22222 2345666666654443 456789999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 745 ep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
|||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++....
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 9999999999999887665544468999999999999876 8999999999999999999987643
No 314
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=6e-34 Score=317.89 Aligned_cols=182 Identities=35% Similarity=0.459 Sum_probs=153.6
Q ss_pred ccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEecCCcCCC-CCHHHHhhcCC-
Q 000671 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQS-GSIRDNILYGK- 682 (1361)
Q Consensus 613 L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--------iayv~Q~~~i~~-~ti~eni~~g~- 682 (1361)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. .+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999873 589999987765 79999998641
Q ss_pred ----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q 000671 683 ----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1361)
Q Consensus 683 ----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~ 754 (1361)
..++ ++..+.++.+++.+.++ ..+.+||||||||++||||++.+|+++||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 1222 23456667666654333 4567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 755 AATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 755 ~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
.+.+.+.+.+... .|+|+|++||+++.+.. ||+|++|++|++++.|+..++
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999876655444 38899999999998865 899999999999988765443
No 315
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.1e-34 Score=284.95 Aligned_cols=194 Identities=27% Similarity=0.417 Sum_probs=167.2
Q ss_pred cEEEEeeEEEeCCC-CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
.|++++++.+-... .+..+|++++|.|++||.++||||+||||||||..+.|+.+|++|+|.+.|
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 46777777666543 235689999999999999999999999999999999999999999999866
Q ss_pred ---eEEEEecCC-cCCCCCHHHHhhcCCCCC-------HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 ---SIAYVSQTS-WIQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 ---~iayv~Q~~-~i~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
++|+|+|.. .|+|.|..||+....+.. .+...+.+++.+|.+-+... +.+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~Hy-----------P~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHY-----------PAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccC-----------ccccCchHHHH
Confidence 599999985 568999999998754321 23466778888887666544 56899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhhcCeEEEEeCCeEEE
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1361)
|+||||+..+|+|++-||||-+||..++++|.+.++... ..|.|.|+||||......|||++-|++|+|++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999998877654 36899999999999999999999999999975
No 316
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-34 Score=307.64 Aligned_cols=174 Identities=22% Similarity=0.335 Sum_probs=150.6
Q ss_pred cEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc--cCCCcEEEEcC---------eEE
Q 000671 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------SIA 661 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~--~~~~G~v~~~g---------~ia 661 (1361)
.++++|+++.|++.. +.++|+|+||++++||+++|+|+||||||||+++|+|.. +|++|+|.++| .++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 578999999997521 246999999999999999999999999999999999986 48999999876 489
Q ss_pred EEecCCcCCC-CCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 662 YVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 662 yv~Q~~~i~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
|++|++.++. .|++||+.++.. ++ +||||||||++||||++.+|++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 9999987655 699999986320 00 7999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchH-H-hhcCeEEEEeC-CeEEEec
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEG-GQITQSG 800 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~-G~i~~~g 800 (1361)
++|||||++||+.+.+.+++.+.....+++|+|++||+++. + ..||++++|++ |++++.|
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999988665544458999999999984 4 55899999999 9998765
No 317
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=334.86 Aligned_cols=215 Identities=21% Similarity=0.371 Sum_probs=179.8
Q ss_pred CCcEEEEeeEEEeCCC--------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000671 592 DRSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~--------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----- 658 (1361)
+..++++|++..|... ....+++||||++++||+++|||+||||||||.++|+|+.+|++|+|.++|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 3457799999999842 234689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEecCCcC---CCCCHHHHhhcCC----CC----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCC
Q 000671 659 ----------SIAYVSQTSWI---QSGSIRDNILYGK----PM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1361)
Q Consensus 659 ----------~iayv~Q~~~i---~~~ti~eni~~g~----~~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 717 (1361)
++-+++|+|.- +..||+++|.... .. .+++..+.++..+|.+++ ...++
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~----------l~ryP 427 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF----------LDRYP 427 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHH----------HhcCc
Confidence 47899999853 5679999996432 11 123566668888887542 23678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 718 ~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
.+|||||||||+|||||..+|+++++|||+||||+.++.++.+.+.+...+ |-|.|+||||+.++++ ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 899999999999999999999999999999999999999999876655443 8899999999999987 89999999999
Q ss_pred EEEecChHHHHhcC-chHHHHH
Q 000671 796 ITQSGNYQELLLAG-TAFEQLV 816 (1361)
Q Consensus 796 i~~~g~~~~l~~~~-~~~~~~~ 816 (1361)
|+|.|+.+++.+.. ..|.+.+
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHHH
Confidence 99999999988763 3454433
No 318
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-34 Score=289.96 Aligned_cols=196 Identities=27% Similarity=0.393 Sum_probs=161.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEecC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQT 666 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--------iayv~Q~ 666 (1361)
..+++.+.+|+..+ .++|+|+|++|.+||+++++||+||||||||+.++|+++|..|+|.++|+ -|.|+|+
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 34567888888654 56999999999999999999999999999999999999999999999874 7999999
Q ss_pred CcC-CCCCHHHHhhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 667 SWI-QSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 667 ~~i-~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
+-+ +..++.||+.||.. .++. ...+.+...+|.+. + .....+||||||||+.|||||..+|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~-------~----~~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGA-------E----HKYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccc-------c----ccceEeecchHHHHHHHHHHhhcCc
Confidence 754 67899999999864 3332 23333444444321 1 1456789999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHH-hhcCeEEEEe--CCeEEEecCh
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLE--GGQITQSGNY 802 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~--~G~i~~~g~~ 802 (1361)
+.++||||++|||+-+++++-+.++..+. .||.+++|||++++. --+++++||. .|+|++.-++
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 99999999999999999998766666554 599999999999875 4589999996 6899876443
No 319
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=7.7e-34 Score=312.00 Aligned_cols=181 Identities=28% Similarity=0.412 Sum_probs=152.6
Q ss_pred EEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------e
Q 000671 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------S 659 (1361)
Q Consensus 597 ~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------------~ 659 (1361)
++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4688999963 3699999999999999999999999999999999999999999998765 3
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
++|++|++.++. .|++||+.++.. .. .+++.++++..++....+ .+..+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-----------QKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-----------CChhhCCHHHHHHHHHH
Confidence 899999998765 799999987432 11 234556666666654332 45678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEE
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1361)
||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+..||++++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999998876655444589999999999988779999875
No 320
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=318.25 Aligned_cols=205 Identities=22% Similarity=0.334 Sum_probs=167.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
..+.++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 46899999999964 3689999999999999999999999999999999999999997765543
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhhcCCC---C-CHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~-~ti~eni~~g~~---~-~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
.++|++|+|.++. .|++||+.++.. . .++ +..++++..++.+.+. ...++.+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHH
Confidence 3899999998775 599999987521 1 222 2334444444432110 12345778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||++||||++++|++++|||||++||+.+.+.+.+.+.+. .++.|+|++||+++++.. ||++++|++|++++.|+.+
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL-KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999987665433 456899999999999865 8999999999999999999
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++.+.
T Consensus 238 ~~~~~ 242 (257)
T PRK14246 238 EIFTS 242 (257)
T ss_pred HHHhC
Confidence 88754
No 321
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.6e-34 Score=304.77 Aligned_cols=160 Identities=29% Similarity=0.488 Sum_probs=144.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++| +++|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48899999987 79999999999999999999999999999999999999999998876 4
Q ss_pred EEEEecCC----cCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 660 IAYVSQTS----WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 660 iayv~Q~~----~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
++|++|++ ..++.|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 89999985 3456899999987421 9999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999887665544458999999999998877 899999999974
No 322
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.1e-33 Score=316.93 Aligned_cols=193 Identities=25% Similarity=0.406 Sum_probs=161.4
Q ss_pred EEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEE
Q 000671 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAY 662 (1361)
Q Consensus 596 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iay 662 (1361)
+++|+++. .+|+|+||++++||+++|+|+||||||||+++|+|..++ +|+|.++| .++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 45666663 179999999999999999999999999999999999864 99999876 2899
Q ss_pred EecCCc-CCCCCHHHHhhcCCCC--C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 663 VSQTSW-IQSGSIRDNILYGKPM--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 663 v~Q~~~-i~~~ti~eni~~g~~~--~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
++|++. .++.|++||+.++... + .++.+++++.+++.+.++ ..+..||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-----------RSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHh
Confidence 999974 5678999999986432 1 234566777776654332 456789999999999999999
Q ss_pred c-------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 736 N-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 736 ~-------~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+ +|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 8 679999999999999999999887665544468999999999998765 89999999999999999988754
No 323
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-33 Score=292.38 Aligned_cols=204 Identities=28% Similarity=0.417 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
|+.+|++++-.. +.+|++++|++++||.++|+||||+||||||++|.||+.|++|++.++| .-|
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 567888887654 4589999999999999999999999999999999999999999999988 368
Q ss_pred EEecCCcC-CCCCHHHHhhcCCC-C----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 662 YVSQTSWI-QSGSIRDNILYGKP-M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 662 yv~Q~~~i-~~~ti~eni~~g~~-~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
.+||+..+ |.-||+|-+.+|.- . +.++-.++.++|-...|+..+.. ....+||||+||||.|||.|.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-------R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-------RDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-------cchhhcCchHHHHHHHHHHHH
Confidence 99999765 89999999999852 2 11122333333333334444433 334579999999999999998
Q ss_pred c------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 736 N------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 736 ~------~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
+ ++++++||||||+||...+.++++.......+|..|+.|-||++.... ||+|++|.+||++..|++++.+..
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 6 456999999999999999999998877777788999999999998765 899999999999999999998754
No 324
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=356.36 Aligned_cols=205 Identities=20% Similarity=0.303 Sum_probs=173.0
Q ss_pred CcEEEEeeEEEeCCC--------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000671 593 RSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~--------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------ 658 (1361)
..++++|+++.|+.. ....+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 358999999999631 123689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEecCCc--C-CCCCHHHHhhcCC---CC-C----HHHHHHHHHHhcchH-HHhcCCCCCCccccCC
Q 000671 659 ----------SIAYVSQTSW--I-QSGSIRDNILYGK---PM-D----KARYDKAIKACALDK-DINNFDHGDLTEIGQR 716 (1361)
Q Consensus 659 ----------~iayv~Q~~~--i-~~~ti~eni~~g~---~~-~----~~~~~~~~~~~~l~~-dl~~l~~gd~t~ig~~ 716 (1361)
.|+|++|+|. + .+.||.||+.++. .. . .++..++++.++|.. ..+ ..
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-----------~~ 460 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW-----------RY 460 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh-----------CC
Confidence 3899999983 4 4679999997632 11 1 134566777777743 222 45
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCC
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGG 794 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1361)
..+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|+||||++.+.. ||+|++|++|
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G 540 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG 540 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6789999999999999999999999999999999999999998776554443 8999999999999876 8999999999
Q ss_pred eEEEecChHHHHhc
Q 000671 795 QITQSGNYQELLLA 808 (1361)
Q Consensus 795 ~i~~~g~~~~l~~~ 808 (1361)
+|++.|+.+++..+
T Consensus 541 ~iv~~g~~~~i~~~ 554 (623)
T PRK10261 541 QIVEIGPRRAVFEN 554 (623)
T ss_pred EEEEecCHHHHhcC
Confidence 99999999998754
No 325
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-33 Score=301.90 Aligned_cols=160 Identities=34% Similarity=0.464 Sum_probs=144.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------~ 659 (1361)
++++|++++|+. .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999964 3699999999999999999999999999999999999999999998765 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
++|++|+|.++ +.|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 89999998776 56999998764 9999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
++++|||||++||+.+...+++.+.....+ ++|+|++||+++.+.. +|++++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999998776655445 7899999999999985 89999999985
No 326
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-33 Score=299.45 Aligned_cols=158 Identities=39% Similarity=0.646 Sum_probs=144.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|+++.|+.. ..++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999753 23689999999999999999999999999999999999999999999877 389
Q ss_pred EEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000671 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1361)
Q Consensus 662 yv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1361)
|++|++.+++.|++||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999998 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCe
Q 000671 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1361)
Q Consensus 742 lLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1361)
||||||++||+.+.+.+.+.+... .+++|+|++||+++.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999988765543 45799999999999998899999999985
No 327
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.8e-33 Score=315.42 Aligned_cols=198 Identities=22% Similarity=0.313 Sum_probs=162.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCC--ccCCCcEEEEcC-------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~--~~~~~G~v~~~g------------- 658 (1361)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 5899999999963 3599999999999999999999999999999999998 579999998865
Q ss_pred -eEEEEecCCcCCC-CCHHHHhhcCCC----------CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCC-CCC
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYGKP----------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLS 721 (1361)
Q Consensus 659 -~iayv~Q~~~i~~-~ti~eni~~g~~----------~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~LS 721 (1361)
.++|++|++.++. .|+++|+.++.. .+ .+++.++++.+++.+.. .+.... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSF----------LSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhh----------hccccccCCC
Confidence 2789999987765 589999876421 01 12234455555553211 223444 599
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh--cCeEEEEeCCeEEEe
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~ 799 (1361)
||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999887665544468999999999999875 799999999999999
Q ss_pred cChHH
Q 000671 800 GNYQE 804 (1361)
Q Consensus 800 g~~~~ 804 (1361)
|+++.
T Consensus 234 ~~~~~ 238 (252)
T CHL00131 234 GDAEL 238 (252)
T ss_pred cChhh
Confidence 98874
No 328
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-34 Score=286.59 Aligned_cols=203 Identities=24% Similarity=0.398 Sum_probs=173.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
..++++|....|... .+|+++|++.++|+.+.|+|.+||||||+|++|.=+..|..|.|.++|
T Consensus 5 ~~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 468888999998753 489999999999999999999999999999999999999999999876
Q ss_pred ------------eEEEEecCCcCC-CCCHHHHhhc------CCCCC--HHHHHHHHHHhcchHHHhcCCCCCCccccCCC
Q 000671 659 ------------SIAYVSQTSWIQ-SGSIRDNILY------GKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1361)
Q Consensus 659 ------------~iayv~Q~~~i~-~~ti~eni~~------g~~~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 717 (1361)
+.++|+|+-.++ .+||.||+.- |.+-+ .++.+..+...++.+.-+ ..+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-----------~YP 150 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-----------AYP 150 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-----------cCc
Confidence 379999998775 4699999964 33222 244555666677765443 456
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 718 ~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
..|||||+||++|||||..+|+++|+|||||||||+-.-++.+.+.....+|+|.++|||.+.+.++ +.+|+.+++|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 7899999999999999999999999999999999999888876555566789999999999999998 599999999999
Q ss_pred EEecChHHHHhcC
Q 000671 797 TQSGNYQELLLAG 809 (1361)
Q Consensus 797 ~~~g~~~~l~~~~ 809 (1361)
.++|+|+++..+.
T Consensus 231 EE~G~P~qvf~nP 243 (256)
T COG4598 231 EEEGPPEQVFGNP 243 (256)
T ss_pred cccCChHHHhcCC
Confidence 9999999998654
No 329
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2e-33 Score=315.02 Aligned_cols=180 Identities=24% Similarity=0.368 Sum_probs=148.9
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEEEe-cCCcC-CCCCHH
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVS-QTSWI-QSGSIR 675 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iayv~-Q~~~i-~~~ti~ 675 (1361)
.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++ |++.+ ...|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 4699999999999999999999999999999999999999999998876 489998 55555 467999
Q ss_pred HHhhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000671 676 DNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1361)
Q Consensus 676 eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1361)
||+.+... .+.+ +..++++.+++.+..+ .+..+||||||||++||||++.+|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLD-----------TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99976422 2222 2344455555543322 4567899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 749 AVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 749 alD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
+||+.+.+.+.+.+..... +++|+|++||+++++.. ||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999876655433 37899999999999876 8999999999998754
No 330
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2e-33 Score=312.33 Aligned_cols=192 Identities=28% Similarity=0.336 Sum_probs=155.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEec-CCcC-CCC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ-TSWI-QSG 672 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q-~~~i-~~~ 672 (1361)
+.++|.+..|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|...+..+ ...+ .+.
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 556677777754 46999999999999999999999999999999999999999999999997544333 3333 467
Q ss_pred CHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 673 SIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 673 ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
|++||+.++.. .+. ++..++++..++.+.+ .....+||||||||++||||++++|+++||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-----------DLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999986532 122 2234444444443332 24567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
||++||+.+.+.+++.+.....+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999888766554567899999999999875 8999999999998764
No 331
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-34 Score=283.40 Aligned_cols=179 Identities=26% Similarity=0.381 Sum_probs=157.4
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEecCCcCCCCCHH
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIR 675 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~~~i~~~ti~ 675 (1361)
+.++|+|+||++.+||..+|+||+|||||||++++.-+..|++|++.+.| +|+||.|.|-+|.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 45799999999999999999999999999999999999999999999988 49999999999999999
Q ss_pred HHhhcCC-----CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCc
Q 000671 676 DNILYGK-----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1361)
Q Consensus 676 eni~~g~-----~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~sal 750 (1361)
||+.|.. ..|.+.....++..++.. +.+.++..+||||+|||++|+|-|.--|+|+|||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9999963 356666666666655543 3345788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHh-cCCcEEEEEccCchH-HhhcCeEEEEeCCeEE
Q 000671 751 DAHTAATLFNECVMAA-LEKKTVILVTHQVEF-LSEVDRILVLEGGQIT 797 (1361)
Q Consensus 751 D~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~ 797 (1361)
|+++++.|-+.+.+.. .++..++.||||.+. ++++|+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999876665554 467899999999987 7889999999999764
No 332
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.9e-33 Score=306.79 Aligned_cols=183 Identities=25% Similarity=0.296 Sum_probs=157.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 678999999964 3589999999999999999999999999999999999999999999876 3899
Q ss_pred EecCCcCC-CCCHHHHhhcCCC----CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
++|++.++ +.|++||+.++.+ .++++++++++.+++....+ .+..+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 99998765 4799999987543 23456777888888865433 45678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhc-CeEEEE
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVL 791 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l 791 (1361)
|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++++..+ +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999998876554444688999999999999876 777766
No 333
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-33 Score=311.68 Aligned_cols=212 Identities=23% Similarity=0.401 Sum_probs=170.1
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-C----CCcEEEEcC----------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-K----ISGTVNLYG---------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-~----~~G~v~~~g---------- 658 (1361)
++++|.+.+|.... ...+++||||++++||+++|||.|||||||+.++|+|+++ + .+|+|.++|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57888888887542 3579999999999999999999999999999999999998 3 578998876
Q ss_pred -------eEEEEecCCcC---CCCCHHHHh----hcCCCC-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 659 -------SIAYVSQTSWI---QSGSIRDNI----LYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 659 -------~iayv~Q~~~i---~~~ti~eni----~~g~~~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
.|||++|+|-- +-.||.+-+ ...... . .++..+.++..++.+.-+ .+...+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~--------~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPER--------RLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHH--------HHhhCCcc
Confidence 49999999842 334666554 322222 1 234556666666653211 22356789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
|||||||||.||.|+..+|+++|.||||+|||..++.+|.+.+.+... .|.|+|+||||+..+.+ ||+|+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999887665443 58999999999999876 8999999999999
Q ss_pred EecChHHHHhcCc-hHHH
Q 000671 798 QSGNYQELLLAGT-AFEQ 814 (1361)
Q Consensus 798 ~~g~~~~l~~~~~-~~~~ 814 (1361)
|.|+.+++.++.. .|.+
T Consensus 234 E~g~~~~i~~~P~HPYT~ 251 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTR 251 (316)
T ss_pred EeCCHHHHhcCCCChHHH
Confidence 9999999987653 3443
No 334
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-34 Score=302.03 Aligned_cols=202 Identities=23% Similarity=0.353 Sum_probs=170.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------------E
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------I 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--------------i 660 (1361)
.++++++.+|.. -.+++|+||++++||+++++|||||||||++++|.|.++|++|+|.++|. |
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 567889998874 46899999999999999999999999999999999999999999999883 8
Q ss_pred EEEecCCcCC-CCCHHHHhhcCCC-------------C--C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 661 AYVSQTSWIQ-SGSIRDNILYGKP-------------M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 661 ayv~Q~~~i~-~~ti~eni~~g~~-------------~--~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
+--+|.+-+| +.||.||++.+.. + + .++..+.++.++|.+..+ +...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~-----------~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELAD-----------RPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhc-----------chhhcC
Confidence 8889998775 6799999987521 1 1 123344555555544332 567799
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|+|||+|+.|||||+.+|+++|||||.+|+.+....++.+.+.+... .|.|+++|.||++.+.. ||||+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999876655544 46899999999999866 89999999999999
Q ss_pred ecChHHHHhcCc
Q 000671 799 SGNYQELLLAGT 810 (1361)
Q Consensus 799 ~g~~~~l~~~~~ 810 (1361)
+|+|+|+.++..
T Consensus 231 eG~P~eV~~dp~ 242 (250)
T COG0411 231 EGTPEEVRNNPR 242 (250)
T ss_pred cCCHHHHhcCHH
Confidence 999999986643
No 335
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.9e-33 Score=306.01 Aligned_cols=187 Identities=22% Similarity=0.298 Sum_probs=156.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------~iay 662 (1361)
..++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .++|
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 10 PLLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred ceEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 46899999999964 3589999999999999999999999999999999999999999999987 2899
Q ss_pred EecCCcCCC-CCHHHHhhcCCCC----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 663 VSQTSWIQS-GSIRDNILYGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 663 v~Q~~~i~~-~ti~eni~~g~~~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
++|++.++. .|++||+.++... .+++.++.++..++.+.. ..+..+||||||||++||||++.+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-----------DTLVRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-----------cCChhhCCHHHHHHHHHHHHHhcC
Confidence 999987665 4999999764321 223344555555543222 256678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeC
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG 793 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1361)
|++++|||||++||+...+.+.+.+.....+++|+|++||+++.+.. +|++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999887665555568999999999999876 799999864
No 336
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.1e-32 Score=311.69 Aligned_cols=198 Identities=24% Similarity=0.309 Sum_probs=155.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc--cCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~--~~~~G~v~~~g-------------- 658 (1361)
++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+. +|++|+|.++|
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 689999999974 35999999999999999999999999999999999995 69999998876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCC-------C---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCC-CCCCh
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGK-------P---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRG-LNLSG 722 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~-------~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g-~~LSg 722 (1361)
.++|++|++.++. .|..+++.+.. . .+ .++.++.++..++ +.+..+ ... .+|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~---~~~~~~LS~ 148 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-------PEDLLT---RSVNVGFSG 148 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC-------Chhhcc---cCCCCCCCH
Confidence 2999999986543 35555543211 0 01 1122233333333 222222 223 37999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh--cCeEEEEeCCeEEEec
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~g 800 (1361)
|||||++||||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|+|++|++|++++.|
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999877554443457999999999999876 7999999999999999
Q ss_pred ChHHH
Q 000671 801 NYQEL 805 (1361)
Q Consensus 801 ~~~~l 805 (1361)
+++..
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 98754
No 337
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.3e-33 Score=302.35 Aligned_cols=183 Identities=25% Similarity=0.367 Sum_probs=156.8
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 468999999964 3589999999999999999999999999999999999999999998876 4899
Q ss_pred EecCCcCC-CCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
++|++.++ +.|++||+.+..+ .++++.+++++..++....+ ....+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998764 6899999987643 34567778888887764432 35678999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEE
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1361)
+||||||++||+...+.+.+.+.....+++|+|++||+...+.. +|+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999887665544468999999999887665 6998876
No 338
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.7e-33 Score=303.44 Aligned_cols=182 Identities=24% Similarity=0.328 Sum_probs=153.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 678999999964 3699999999999999999999999999999999999999999999876 4899
Q ss_pred EecCCcCC-CCCHHHHhhcCCC--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1361)
++|++.++ +.|++||+.++.. .++.+..+.++..++.+.. ..+..+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-----------DYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-----------hCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99998774 6899999998632 1233455566655553221 24456899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEE
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 790 (1361)
+++|||||++||+.+.+.+.+.+.....+++|+|++||+.+.+.++|.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999887666544568999999999999999987553
No 339
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-34 Score=291.28 Aligned_cols=200 Identities=29% Similarity=0.449 Sum_probs=173.8
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
|+++|++.+|++ +.+++|+|++|++|.+++++||||+||||||+++.+++++++|+|.++| +++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 678999999975 4699999999999999999999999999999999999999999999998 377
Q ss_pred EEecCCcCC-CCCHHHHhhcCC-CC--------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 662 YVSQTSWIQ-SGSIRDNILYGK-PM--------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 662 yv~Q~~~i~-~~ti~eni~~g~-~~--------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
..-|+..+. ..||||-+.||+ || |...++++++-..|++ ++ + +.-.+||||||||.-+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~-l~---d-------ryLd~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED-LS---D-------RYLDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-hH---H-------HhHHhcccchhhhhhhh
Confidence 788887764 569999999985 33 3456677777766643 22 1 33457999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
..+.++.|.++||||+++||.+....+++.+.+...+ |||+|+|-||.++.+. +|+|+-|+||+++.+|+++|++..
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 9999999999999999999999999999877665543 8999999999999976 799999999999999999999864
No 340
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6e-33 Score=346.91 Aligned_cols=205 Identities=19% Similarity=0.326 Sum_probs=169.6
Q ss_pred CcEEEEeeEEEeCCC--------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000671 593 RSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~--------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------ 658 (1361)
..++++|++++|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 358999999999631 12468999999999999999999999999999999999985 899999876
Q ss_pred ----------eEEEEecCCc--C-CCCCHHHHhhcCCC-----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000671 659 ----------SIAYVSQTSW--I-QSGSIRDNILYGKP-----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 659 ----------~iayv~Q~~~--i-~~~ti~eni~~g~~-----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1361)
.++|++|++. + .+.|++||+.++.. .+ +++..++++..++..+. ...+
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPET----------RHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHH----------HhcC
Confidence 2899999972 4 45799999987421 12 23445566666664221 1246
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCC
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGG 794 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1361)
..+|||||||||+||||++.+|+++||||||++||+.+.+.+++.+.+...+ |+|+|+||||++.+.. ||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 6789999999999999999999999999999999999999998876655443 8999999999999875 8999999999
Q ss_pred eEEEecChHHHHhc
Q 000671 795 QITQSGNYQELLLA 808 (1361)
Q Consensus 795 ~i~~~g~~~~l~~~ 808 (1361)
++++.|+.+++.+.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999988653
No 341
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-33 Score=347.22 Aligned_cols=202 Identities=19% Similarity=0.313 Sum_probs=166.4
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-CCCcEEEEcC--------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-KISGTVNLYG-------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-~~~G~v~~~g-------------- 658 (1361)
.++++|+++.|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5899999999853223468999999999999999999999999999999999998 5999999876
Q ss_pred eEEEEecCC---cC-CCCCHHHHhhcCCC--C------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 659 SIAYVSQTS---WI-QSGSIRDNILYGKP--M------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 659 ~iayv~Q~~---~i-~~~ti~eni~~g~~--~------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
.++|++|++ .+ .+.|+.||+.++.. + +. ++.++.++.+++..+ ....+..+|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 408 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTA----------SPELAIARLSG 408 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCC----------CcccccccCCH
Confidence 289999996 34 46799999987521 1 11 233445555544211 12356789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++.+.. ||++++|++|+++..|+
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999987766554568999999999999876 89999999999999998
Q ss_pred hHHH
Q 000671 802 YQEL 805 (1361)
Q Consensus 802 ~~~l 805 (1361)
.+++
T Consensus 489 ~~~~ 492 (506)
T PRK13549 489 NHNL 492 (506)
T ss_pred cccC
Confidence 7765
No 342
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.3e-32 Score=300.45 Aligned_cols=172 Identities=28% Similarity=0.379 Sum_probs=148.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCC--ccCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~--~~~~~G~v~~~g-------------- 658 (1361)
++++|++++|+. .++++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999973 3699999999999999999999999999999999999 579999999876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
.++|++|+|.+++ .++++|+ . ....+||||||||++||||++.+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcC
Confidence 2999999987765 4666655 0 11247999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHh--hcCeEEEEeCCeEEEecChHHH
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS--EVDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~--~~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|++++|||||++||+.+.+.+++.+.+...+++|+|++||+++.+. .+|++++|++|++.+.|+ .++
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~-~~~ 191 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KEL 191 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEcc-HHH
Confidence 9999999999999999999988766654445899999999999987 589999999999999984 444
No 343
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-33 Score=275.03 Aligned_cols=199 Identities=30% Similarity=0.425 Sum_probs=168.1
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
+|.+++.+|.|... .+|-||+|+.+.||.+.+.||+|+|||||++.+.=+.-|.+|+..+.|
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 58899999999854 589999999999999999999999999999999888889999998865
Q ss_pred ----eEEEEecCCcCC-CCCHHHHhhc------CCCCC--HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ----SIAYVSQTSWIQ-SGSIRDNILY------GKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ----~iayv~Q~~~i~-~~ti~eni~~------g~~~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
++|+|+|+..++ ..||.||+.- |.+.+ ..+..+.++...|.+..+.+ +..|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~-----------plhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRY-----------PLHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccC-----------ceecccchh
Confidence 499999997764 5699999864 22222 23445566666666554444 458999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
|||+||||++.+|+++++||||+||||+...++.+.+.+....|.|-++|||.++..++ |.+++.|++|+|+|.|+.+-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999999887655555579999999999999987 79999999999999998776
Q ss_pred HH
Q 000671 805 LL 806 (1361)
Q Consensus 805 l~ 806 (1361)
..
T Consensus 228 ft 229 (242)
T COG4161 228 FT 229 (242)
T ss_pred cc
Confidence 54
No 344
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.3e-33 Score=298.48 Aligned_cols=177 Identities=29% Similarity=0.462 Sum_probs=142.2
Q ss_pred EEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-EEEEecCCcCCCCCH
Q 000671 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGSI 674 (1361)
Q Consensus 596 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~-iayv~Q~~~i~~~ti 674 (1361)
+++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++|. +. + ......
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~---~---~~~~~~ 71 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA---S---LSPKEL 71 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC---c---CCHHHH
Confidence 46899999964 36999999999999999999999999999999999999999999999873 10 0 000011
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q 000671 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1361)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~ 754 (1361)
+..+.+ ..++++.+++.+.++ .++.+||||||||++||||++.+|+++||||||++||+.+
T Consensus 72 ~~~i~~--------~~q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 132 (180)
T cd03214 72 ARKIAY--------VPQALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132 (180)
T ss_pred HHHHhH--------HHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 222221 111667777765443 4567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 755 AATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 755 ~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 133 ~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 133 QIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99988765544344 7899999999999855 8999999999998653
No 345
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.3e-32 Score=309.00 Aligned_cols=192 Identities=23% Similarity=0.340 Sum_probs=157.7
Q ss_pred EEeCCCCCCCcccceeEEec-----CCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-eEEEEecCCc-CCCCCH
Q 000671 602 FSWDPELAIPTLRGVNLDIK-----WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSW-IQSGSI 674 (1361)
Q Consensus 602 f~~~~~~~~~~L~~i~l~i~-----~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-~iayv~Q~~~-i~~~ti 674 (1361)
|+|+.. ...++|++|+++ +||+++|+|+||||||||+++|+|+++|++|+|.++| .|+|++|++. .++.|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 567643 347888988887 6899999999999999999999999999999999999 8999999986 468899
Q ss_pred HHHhhcCCC-C--CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q 000671 675 RDNILYGKP-M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1361)
Q Consensus 675 ~eni~~g~~-~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD 751 (1361)
+||+.+... . ...+..++++.+++...++ .+..+||||||||++||||++.+|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999975422 1 2234566777777754332 4667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEE--EecChHHHH
Q 000671 752 AHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT--QSGNYQELL 806 (1361)
Q Consensus 752 ~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~--~~g~~~~l~ 806 (1361)
+.+...+.+.+..... .++|+|+|||+++.+.. ||+|++|+++..+ ..++++++.
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999998876554433 48999999999999886 8999999775444 556666654
No 346
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.1e-32 Score=344.04 Aligned_cols=209 Identities=22% Similarity=0.371 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEeCC--CCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc-C-----------
Q 000671 593 RSVKIQEGNFSWDP--ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G----------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~--~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~-g----------- 658 (1361)
..++++|++++|+. +...++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++ |
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 35999999999963 122469999999999999999999999999999999999999999999984 3
Q ss_pred --------eEEEEecCCcCC-CCCHHHHhhcCCC--CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 --------SIAYVSQTSWIQ-SGSIRDNILYGKP--MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 --------~iayv~Q~~~i~-~~ti~eni~~g~~--~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
+++|++|++.++ +.|++||+.++.. .. +++..++++.+++...- .......+..+||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHH
Confidence 289999998665 4699999986321 11 12344555555553200 000123567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
||||++||||++.+|+++||||||++||+...+.+.+.+..... .|+|+|++|||++++.. ||++++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999877655444 38999999999999876 89999999999999999
Q ss_pred hHHHHh
Q 000671 802 YQELLL 807 (1361)
Q Consensus 802 ~~~l~~ 807 (1361)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888753
No 347
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.2e-30 Score=351.64 Aligned_cols=206 Identities=19% Similarity=0.294 Sum_probs=176.8
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
.+..++++|+++.|+.+ ++++++|+||+|++||+++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 1934 ~~~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred CCceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhh
Confidence 34579999999999742 24699999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCcCC-CCCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i~-~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.||||||++.++ +.|++||+.+.. ... +++.+++++.++|.+..+ ++..+||||||||++|
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNKRKLST 2081 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHH
Confidence 389999997665 679999997631 122 233456677777765433 5667899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|++++|||||+|||+..++.+++.+.+...+|+|+|++||+++.+.. ||||++|++|+++..|+++++..+
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999998766555568999999999999876 899999999999999999998654
No 348
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.1e-32 Score=306.21 Aligned_cols=179 Identities=31% Similarity=0.469 Sum_probs=150.7
Q ss_pred EEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEecCCcC---CCCCHHHHhhcCCC---
Q 000671 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWI---QSGSIRDNILYGKP--- 683 (1361)
Q Consensus 618 l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--------iayv~Q~~~i---~~~ti~eni~~g~~--- 683 (1361)
|++++||+++|+|+||||||||+++|.|.++|++|+|.++|. ++|++|++.+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999999883 9999999854 35799999987521
Q ss_pred --C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q 000671 684 --M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1361)
Q Consensus 684 --~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~ 755 (1361)
+ +.++..++++.+++.+.. ..+..+||||||||++||||++.+|++++|||||++||+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 123345556666664322 245678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 756 ATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 756 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
+.+.+.+.....+++|+|++||+++.+.. ||+++++ +|++++.|+++++.++
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 99988766554568999999999998865 8999999 8999999999988653
No 349
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-32 Score=300.37 Aligned_cols=184 Identities=23% Similarity=0.300 Sum_probs=157.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEEe
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVS 664 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------~iayv~ 664 (1361)
++++|+++.|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 789999999964 3589999999999999999999999999999999999999999999887 379999
Q ss_pred cCCcC-CCCCHHHHhhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 665 QTSWI-QSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 665 Q~~~i-~~~ti~eni~~g~~---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
|++.+ .+.|++||+.+... .++++..++++..++....+ .+..+||||||||++||||++++|++
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 88654 57899999976432 23455677888888765332 34568999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeC
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1361)
++|||||++||+.+.+.+.+.+.+...+++|+|++||+++.++. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999987665544568999999999999988 99988754
No 350
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.4e-32 Score=306.00 Aligned_cols=187 Identities=24% Similarity=0.347 Sum_probs=152.4
Q ss_pred EEEEeeEEEeCCC----CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc--C----------
Q 000671 595 VKIQEGNFSWDPE----LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~----~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~--g---------- 658 (1361)
++++|++++|+.. ...++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6789999999631 12468999999999999999999999999999999999999999999886 3
Q ss_pred ---------eEEEEecCCcCC-CCCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 ---------SIAYVSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 ---------~iayv~Q~~~i~-~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.++|++|++.++ +.|++||+.++. ..+ .++..++++..++..+.. ..++.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCcccCC
Confidence 389999998765 569999997631 122 123344455555433221 14577899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEE
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1361)
||||||++||||++.+|++++|||||++||+++.+.+.+.+.....+|+|+|++||+.+++.. ||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999887665544468999999999998864 8999876
No 351
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-33 Score=296.95 Aligned_cols=184 Identities=26% Similarity=0.440 Sum_probs=162.8
Q ss_pred ceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEecCCcCC-CCCHHH
Q 000671 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQ-SGSIRD 676 (1361)
Q Consensus 615 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------------~iayv~Q~~~i~-~~ti~e 676 (1361)
++||+.+.-.++||-|++|||||||+++|.|+.+|++|.|.++| +||||+|+.-+| ..|||.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 67888888789999999999999999999999999999999988 499999999876 569999
Q ss_pred HhhcCCCCC-HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q 000671 677 NILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1361)
Q Consensus 677 ni~~g~~~~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~ 755 (1361)
|+.||.... ...++++++..++..-++. .+.+||||+||||+|+|||..+|+++|||||+|+||...+
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R-----------~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDR-----------YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhh-----------CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998754 6678899999998888775 4568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 756 ATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 756 ~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
+++.-.+-+...+ +-.++.|||.++++.+ ||+|++|++|++...|..+++..+.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9987655443333 5689999999998755 9999999999999999999988653
No 352
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-32 Score=288.88 Aligned_cols=160 Identities=26% Similarity=0.424 Sum_probs=131.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-EEEEecCCcCCCCC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGS 673 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~-iayv~Q~~~i~~~t 673 (1361)
++++|++++|+. .++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|. +. ..+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~---------~~~ 68 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS---------FAS 68 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC---------cCC
Confidence 468999999964 36999999999999999999999999999999999999999999999873 11 000
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHH
Q 000671 674 IRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753 (1361)
Q Consensus 674 i~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~ 753 (1361)
.++ .+. ...+. . ..||||||||++||||++++|++++|||||++||+.
T Consensus 69 ~~~-----------~~~---~~i~~------~------------~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~ 116 (163)
T cd03216 69 PRD-----------ARR---AGIAM------V------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPA 116 (163)
T ss_pred HHH-----------HHh---cCeEE------E------------EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 000 000 00000 0 019999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 754 TAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 754 ~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++++
T Consensus 117 ~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 117 EVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999987665554568999999999998876 89999999999875
No 353
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=7.9e-33 Score=350.15 Aligned_cols=191 Identities=29% Similarity=0.406 Sum_probs=162.5
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC---CcEEEEcCe----------EEEEecCCcCC-CCCH
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYGS----------IAYVSQTSWIQ-SGSI 674 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~---~G~v~~~g~----------iayv~Q~~~i~-~~ti 674 (1361)
++++|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|. +|||+|+++++ +.||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 567999999999999999999999999999999999999874 899999883 69999999887 5699
Q ss_pred HHHhhcCCCC------CHH----HHHHHHHHhcchHHHhcCCCCCCccccCC--CCCCChHHHHHHHHHHHHccCCCEEE
Q 000671 675 RDNILYGKPM------DKA----RYDKAIKACALDKDINNFDHGDLTEIGQR--GLNLSGGQKQRIQLARAVYNDADIYL 742 (1361)
Q Consensus 675 ~eni~~g~~~------~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~--g~~LSgGQkqRv~lARal~~~~~ill 742 (1361)
+|||.|+... .++ +.+++++..+| ++..+|.+|+. +..||||||||++||||++.+|++++
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vll 189 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL-------RKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLF 189 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCc-------hhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEE
Confidence 9999986432 111 22333333332 33457889984 57899999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCch-H-HhhcCeEEEEeCCeEEEecChHHHH
Q 000671 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE-F-LSEVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~-l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
|||||||||++++.++.+.+.+...+|+|+|+++|+++ . .+.+|++++|++|++++.|+++++.
T Consensus 190 lDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 190 CDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred eeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999887776667999999999985 4 4668999999999999999999875
No 354
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-32 Score=296.62 Aligned_cols=179 Identities=19% Similarity=0.271 Sum_probs=151.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEec
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------~iayv~Q 665 (1361)
++++|++++|+. +.++ ++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 678999999963 2345 59999999999999999999999999999999999999999987 2899999
Q ss_pred CCcC-CCCCHHHHhhcCCCC--CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000671 666 TSWI-QSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1361)
Q Consensus 666 ~~~i-~~~ti~eni~~g~~~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1361)
++.+ ++.|++||+.++... ..++..++++.+++.+..+ +++.+||||||||++||||++++|++++
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8754 678999999875432 2445666777777754433 4677999999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeE
Q 000671 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788 (1361)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 788 (1361)
|||||++||+.+.+.+.+.+.....+++|+|++||+++.++.+|-+
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 9999999999999988776543445689999999999999998865
No 355
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.8e-29 Score=293.67 Aligned_cols=452 Identities=17% Similarity=0.204 Sum_probs=293.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHH---HHHHhHHHHHhcHH-HHHHHHHHHHHHHH
Q 000671 331 ESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIV---NYIAVDAYRMGEFP-FWFHLTWSLALQLF 406 (1361)
Q Consensus 331 ~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~iv---Nlms~D~~ri~~~~-~~~~~~w~~plqi~ 406 (1361)
.+.......|...-+..|.|.-++.-+|++=++-..--+-.+..+.|. -+++.|++++.... .....+-.+|+.++
T Consensus 135 ~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~ 214 (659)
T KOG0060|consen 135 ISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLV 214 (659)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeee
Confidence 344455566778889999999999999998876321100001111122 36788998876532 33345556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHH
Q 000671 407 LAIGVLFGVVGLGALPGLVL-FLICGLLN----VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSL 481 (1361)
Q Consensus 407 va~~~L~~~lG~~~l~gl~v-~~l~~~l~----~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~ 481 (1361)
.-.+.+|...||-..+.+.. +++...+| .|+.+++...|+. .-|-|-+. +++..|-..|-+|+-+..-...
T Consensus 215 ~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qekl---EGdfRy~h-~rlr~NaE~iAFY~g~~~E~~~ 290 (659)
T KOG0060|consen 215 YYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKL---EGDFRYKH-SRLRVNAEEIAFYRGGQVEHQR 290 (659)
T ss_pred hhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHh---hcchhhhe-eeeeecchhhhhhccCchHHHH
Confidence 77777777666533222111 11122222 2334444333332 23444433 2445566778888887655544
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHH-HHHHHHhCCCCCCHHHHHHHHH----HHHHHHHHH
Q 000671 482 IESRREKEFKWLSEAQLRKA----YGTVIYWMS---PTIISSVI-FLGCALTGSAPLNASTIFTVLA----TLRSMGEPV 549 (1361)
Q Consensus 482 i~~~R~~El~~l~~~~~~~~----~~~~~~~~~---p~~v~~~~-f~~~~l~~~~~Lt~~~~Ft~l~----lf~~l~~pl 549 (1361)
+++.=+.=++++++....+. +..++-+.. +.++.... |.+. . ...++++..++-++ .+.-+...+
T Consensus 291 ~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h--~-y~~~s~aEL~~~i~~na~~~i~Li~~f 367 (659)
T KOG0060|consen 291 TDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGH--V-YDDLSPAELSGLISNNAFVFIYLISAF 367 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccc--c-cCCcCHHHHHHHHhhhHHHHHHHHHHH
Confidence 44333333333333221111 111111111 11111111 1111 1 14577777665543 234444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cCCC-------------Cchhhh-------ccccCCCCcEEEEeeEEEeCCCC
Q 000671 550 RMIPEALSIMIQVKVSFDRINAFLLD-HELN-------------NDDVRR-------ISLQKSDRSVKIQEGNFSWDPEL 608 (1361)
Q Consensus 550 ~~lp~~i~~~~~a~vS~~RI~~fL~~-~e~~-------------~~~~~~-------~~~~~~~~~i~~~~~~f~~~~~~ 608 (1361)
..+...-..+.+-..-..||.++++. ++.. .+...+ .....+++.|++++++++-|++
T Consensus 368 ~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~- 446 (659)
T KOG0060|consen 368 GRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN- 446 (659)
T ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-
Confidence 55555555555555567788887641 1100 000000 0112345789999999998876
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc--C---eEEEEecCCcCCCCCHHHHhhcCC-
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---SIAYVSQTSWIQSGSIRDNILYGK- 682 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~--g---~iayv~Q~~~i~~~ti~eni~~g~- 682 (1361)
...+.+|+||+|+.|+-+.|+||||||||||++.+.|+.+..+|++... | .+-|+||.|...-||.||-+.+..
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 4567888999999999999999999999999999999999999999764 3 499999999999999999999972
Q ss_pred -------CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q 000671 683 -------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1361)
Q Consensus 683 -------~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~ 755 (1361)
..++++..+.++..+|..-++....=|+..+-+-...||+|||||++.||-+|++|++-+|||.|||||..++
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE 606 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE 606 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence 2457789999999999877776554444445567789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeC
Q 000671 756 ATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1361)
Q Consensus 756 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1361)
..+++.|.+ .|.|.|-|.|+.+.-+.=|.++-|+.
T Consensus 607 ~~~Yr~~r~---~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 607 GALYRKCRE---MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHH---cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 999987653 58899999999998888899999976
No 356
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-32 Score=338.03 Aligned_cols=200 Identities=24% Similarity=0.371 Sum_probs=169.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCc--
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-- 668 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~-- 668 (1361)
..++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+||++|++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 46999999999964 3589999999999999999999999999999999999999999999987 6999999974
Q ss_pred CC-CCCHHHHhhcCC--CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 669 IQ-SGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 669 i~-~~ti~eni~~g~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
++ +.|++||+.+.. ..++++.+++++.+++..+.. ..++.+||||||||++||||++.+|+++||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI----------KKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh----------cCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 33 479999986521 223456677777777742221 25678999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-EecChHHHHhc
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELLLA 808 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 808 (1361)
||++||+.+.+.+.+.+.. . +.|+|+||||++++.. ||++++|++|+++ +.|+++++.+.
T Consensus 465 Pt~~LD~~~~~~l~~~l~~-~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 465 PTNHMDMESIESLNMALEK-Y--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCCCCHHHHHHHHHHHHH-C--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999998875543 2 4599999999999876 8999999999998 88998887643
No 357
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-32 Score=339.24 Aligned_cols=194 Identities=20% Similarity=0.375 Sum_probs=159.5
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 589999998652 379999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCC----cCCCCCHHHHhhcCCCC------------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 660 IAYVSQTS----WIQSGSIRDNILYGKPM------------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 660 iayv~Q~~----~i~~~ti~eni~~g~~~------------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
++|++|++ .+.+.|++||+.++... .. ++.+++++..++.. + .......+
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~ 409 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC--------H--SVNQNITE 409 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC--------C--CccCcccc
Confidence 89999984 33467999999876321 11 12233344433321 1 12356788
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++.+.. ||++++|++|++++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999987665554568999999999998765 89999999999998
Q ss_pred ecCh
Q 000671 799 SGNY 802 (1361)
Q Consensus 799 ~g~~ 802 (1361)
.++.
T Consensus 490 ~~~~ 493 (510)
T PRK09700 490 ILTN 493 (510)
T ss_pred EecC
Confidence 7755
No 358
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.98 E-value=4.9e-32 Score=295.70 Aligned_cols=180 Identities=25% Similarity=0.315 Sum_probs=149.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 468899999964 3689999999999999999999999999999999999999999999877 3899
Q ss_pred EecCCcCC-CCCHHHHhhcCCCC---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
++|++.++ +.|++||+.+.... ++++..++++..++.+.++ .+..+||||||||++||||++.+|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 99998765 47999999765321 2345677777777765443 456789999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEE
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1361)
++++|||||++||+.+.+.+.+.+.....+|+|+|++||+...+.. ++++
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 9999999999999999998877665544568999999998854332 4443
No 359
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.98 E-value=3.3e-32 Score=295.13 Aligned_cols=161 Identities=27% Similarity=0.416 Sum_probs=136.0
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------eEEEEecCC--cCCCC
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------SIAYVSQTS--WIQSG 672 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------~iayv~Q~~--~i~~~ 672 (1361)
.++|+|+||+|++||+++|+||||||||||+++|+|..+|++|+|.++| .++|++|+| .+++.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 4689999999999999999999999999999999999999999998865 389999998 46778
Q ss_pred CHHHHhhcCC---CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 673 SIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 673 ti~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
|++||+.++. ..+. ++..++++..++.+..+ ++..+||||||||++||||++.+|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-----------RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999998752 1222 24455666666654333 4567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchH
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~ 781 (1361)
||++||+.+.+.+.+.+.....+|+|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999887765554568999999999864
No 360
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.98 E-value=3e-32 Score=338.75 Aligned_cols=200 Identities=21% Similarity=0.289 Sum_probs=162.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-CCcEEEEcC--------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG-------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-~~G~v~~~g-------------- 658 (1361)
.++++|++++|+.+.+..+|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 58999999988432124589999999999999999999999999999999999985 899999876
Q ss_pred eEEEEecCC----cCCCCCHHHHhhcCCC--------CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 659 SIAYVSQTS----WIQSGSIRDNILYGKP--------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 659 ~iayv~Q~~----~i~~~ti~eni~~g~~--------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
+++|++|++ .+.+.|++||+.++.. .+. ++.+++++.+++..+ ....+...|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA----------SPFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC----------CccCccccCCH
Confidence 289999996 3456799999987521 111 223444555444211 12256678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++++.. ||++++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999887665555568999999999999876 89999999999998765
Q ss_pred hH
Q 000671 802 YQ 803 (1361)
Q Consensus 802 ~~ 803 (1361)
.+
T Consensus 487 ~~ 488 (500)
T TIGR02633 487 NH 488 (500)
T ss_pred cc
Confidence 43
No 361
>PLN03211 ABC transporter G-25; Provisional
Probab=99.98 E-value=2.2e-31 Score=336.51 Aligned_cols=191 Identities=26% Similarity=0.363 Sum_probs=160.4
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC--CcEEEEcC---------eEEEEecCCcCC-CCCHHHH
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--SGTVNLYG---------SIAYVSQTSWIQ-SGSIRDN 677 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~--~G~v~~~g---------~iayv~Q~~~i~-~~ti~en 677 (1361)
+++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++| ++|||+|++.++ +.||+||
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 46999999999999999999999999999999999999885 89999988 389999998876 5699999
Q ss_pred hhcCC------CCCHH----HHHHHHHHhcchHHHhcCCCCCCccccCC-CCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000671 678 ILYGK------PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1361)
Q Consensus 678 i~~g~------~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~-g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1361)
+.|.. ..+++ +.+++++..+|. +..+|.+|++ +..||||||||++||||++++|+|++||||
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 98742 12222 234444444443 2335667654 678999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchH-H-hhcCeEEEEeCCeEEEecChHHHHh
Q 000671 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|+|||+.++.++.+.+.+...+|+|+|++||+++. + +.+|+|++|++|++++.|+.+++.+
T Consensus 234 tsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 234 TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999988766555579999999999974 4 4589999999999999999998863
No 362
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=4.1e-32 Score=285.79 Aligned_cols=205 Identities=23% Similarity=0.391 Sum_probs=174.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEe
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVS 664 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------~iayv~ 664 (1361)
.+++++++.+|.+ ..+++|+||++++|++.+++|+||+||||.+++|+|+++|++|+|.++| +|||.|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 4789999999975 4689999999999999999999999999999999999999999999998 799999
Q ss_pred cCCcC-CCCCHHHHhhcCC---CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 665 QTSWI-QSGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 665 Q~~~i-~~~ti~eni~~g~---~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
.+.-+ +..||.|-+.|-. .++++..++-++ ..++.+.-.+. -.++..+||.|.+|+|.+--|++++|++
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~-----~wLer~~i~~~--~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQ-----AWLERLEIVGK--KTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHH-----HHHHhcccccc--ccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 99765 6789999998742 244444333322 23333322221 1367889999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
++||||||||||.+.+.+-+.++....+|+|||++||+++.++. ||+++.|++|+.+-.|+.+++.++
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 99999999999999998888777777889999999999999987 999999999999999999998764
No 363
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7.2e-32 Score=335.00 Aligned_cols=196 Identities=22% Similarity=0.344 Sum_probs=161.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5788888742 389999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCC----cCCCCCHHHHhhcCCCC---------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 660 IAYVSQTS----WIQSGSIRDNILYGKPM---------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 660 iayv~Q~~----~i~~~ti~eni~~g~~~---------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
++|++|++ .+.+.|+.||+.++... +. ++.++.++.+++..+ ....+..+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTP----------SREQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccC----------CccCccccCCH
Confidence 79999997 34568999999875310 11 223444444444211 12356789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|.|+|++|||++++.. ||++++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999987665555568999999999999865 89999999999999998
Q ss_pred hHHHH
Q 000671 802 YQELL 806 (1361)
Q Consensus 802 ~~~l~ 806 (1361)
.++..
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 87654
No 364
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.98 E-value=6.5e-32 Score=335.40 Aligned_cols=194 Identities=23% Similarity=0.406 Sum_probs=160.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 588888873 369999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCC---cC-CCCCHHHHhhcCCC---------CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 660 IAYVSQTS---WI-QSGSIRDNILYGKP---------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 660 iayv~Q~~---~i-~~~ti~eni~~g~~---------~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
+||++|+| .+ .+.|++||+.++.. .+ +++.+++++.+++..+ ...+++.+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP----------SMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCC----------CccCchhhCCH
Confidence 89999997 33 56799999987421 11 1223344444444210 12366789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++.+.. ||+|++|++|+++..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999988766655568999999999999876 89999999999999998
Q ss_pred hHHH
Q 000671 802 YQEL 805 (1361)
Q Consensus 802 ~~~l 805 (1361)
.+++
T Consensus 479 ~~~~ 482 (501)
T PRK10762 479 REQA 482 (501)
T ss_pred cccC
Confidence 7765
No 365
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=1.4e-31 Score=294.81 Aligned_cols=184 Identities=18% Similarity=0.224 Sum_probs=149.0
Q ss_pred cccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEE-EcCeEEEEecCCcCCC-CCHHHHhhcCC---CCCH
Q 000671 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-LYGSIAYVSQTSWIQS-GSIRDNILYGK---PMDK 686 (1361)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~-~~g~iayv~Q~~~i~~-~ti~eni~~g~---~~~~ 686 (1361)
+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|. ++|....+.|++.+++ .|++||+.+.. ..+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999999997 7776444566666654 69999998642 2333
Q ss_pred HHHHHHH-HHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHH
Q 000671 687 ARYDKAI-KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765 (1361)
Q Consensus 687 ~~~~~~~-~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~ 765 (1361)
++..+.+ +..++... ...+...||||||||++||||++.+|+++|||||++++|+.+.+.+.+.+.+.
T Consensus 82 ~~~~~~~~~~~~l~~~-----------~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~ 150 (213)
T PRK15177 82 DEFSHFCYQLTQLEQC-----------YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ 150 (213)
T ss_pred HHHHHHHHHHhChhHH-----------hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 3333222 22222221 12456789999999999999999999999999999999999999887765443
Q ss_pred hcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 766 ALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 766 ~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
.+++|+|++||+++.+.. ||++++|++|++++.|+.++..+
T Consensus 151 -~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 151 -LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred -hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 356799999999999865 89999999999999999888753
No 366
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=9.4e-32 Score=293.29 Aligned_cols=194 Identities=25% Similarity=0.333 Sum_probs=162.2
Q ss_pred cEEEEeeEEEeCCCC------CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeE-EEEecC
Q 000671 594 SVKIQEGNFSWDPEL------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-AYVSQT 666 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~i-ayv~Q~ 666 (1361)
-++++|.+..|+... ...+++||||+|++||.++|||.|||||||+-++|+|+++|++|+|.++|+= .-..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 467888888887532 1468999999999999999999999999999999999999999999998841 1111
Q ss_pred CcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000671 667 SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1361)
Q Consensus 667 ~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1361)
.....+++.+.++..++.++.. ...+++|||||+|||+||||+.-+|+++++|||
T Consensus 82 ---------------~~~~~~~v~elL~~Vgl~~~~~----------~ryPhelSGGQrQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 82 ---------------KEERRERVLELLEKVGLPEEFL----------YRYPHELSGGQRQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred ---------------hhHHHHHHHHHHHHhCCCHHHh----------hcCCcccCchhhhhHHHHHHHhhCCcEEEecCc
Confidence 2223456888899988877543 256789999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcCc-hHHH
Q 000671 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT-AFEQ 814 (1361)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~-~~~~ 814 (1361)
+|+||..++.+|.+.+..... .|-|.+++|||++.+++ +|+|.||..|+|+|.|+.+++..+.. .|.+
T Consensus 137 vSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk 207 (268)
T COG4608 137 VSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTK 207 (268)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHH
Confidence 999999999999876554433 48899999999999988 79999999999999999999987543 3443
No 367
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=1.7e-31 Score=312.31 Aligned_cols=171 Identities=30% Similarity=0.411 Sum_probs=145.2
Q ss_pred EeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEEecCCcCCC-CCHHHHhhcCCC---CC----HHH
Q 000671 628 VCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KAR 688 (1361)
Q Consensus 628 ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv~Q~~~i~~-~ti~eni~~g~~---~~----~~~ 688 (1361)
|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .|++||+.|+.. .+ .++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999999999999987 3899999988764 699999998642 22 234
Q ss_pred HHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-
Q 000671 689 YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767 (1361)
Q Consensus 689 ~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~- 767 (1361)
.+++++.+++....+ .+..+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+...
T Consensus 81 ~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 81 VLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 556666666643332 45678999999999999999999999999999999999999999877665444
Q ss_pred CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 768 EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 768 ~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
.|+|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 150 ~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 150 LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 38999999999998765 8999999999999999999997653
No 368
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=4.6e-31 Score=272.41 Aligned_cols=141 Identities=32% Similarity=0.511 Sum_probs=129.4
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCCC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~~ 672 (1361)
++++|+++.|++ .++++|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------- 70 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------- 70 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------
Confidence 468899999964 2599999999999999999999999999999999999999999999998 5899998
Q ss_pred CHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q 000671 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1361)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~ 752 (1361)
||||||||++||||++++|++++||||+++||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
.+.+.+.+.+. .. ++|+|++||+++.+.. +|++++|++|+
T Consensus 104 ~~~~~l~~~l~-~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALEEALK-EY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHH-Hc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999876543 32 4799999999999876 79999999985
No 369
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=2e-31 Score=331.30 Aligned_cols=195 Identities=19% Similarity=0.360 Sum_probs=159.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++. .+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 588888873 159999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCC----cCCCCCHHHHhhcC----CCC--CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 660 IAYVSQTS----WIQSGSIRDNILYG----KPM--DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 660 iayv~Q~~----~i~~~ti~eni~~g----~~~--~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
++|+||++ ...+.|+.||+... ... .. ++.+++++.+++.. .....+..+||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~k 409 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF----------NHAEQAARTLSGGNQ 409 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC----------CCccCccccCCcHHH
Confidence 89999985 33456999998532 011 11 12334444444421 012356789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++++.. ||++++|++|+++..|+.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999988766554568999999999999876 89999999999999998876
Q ss_pred HH
Q 000671 805 LL 806 (1361)
Q Consensus 805 l~ 806 (1361)
+.
T Consensus 490 ~~ 491 (510)
T PRK15439 490 IN 491 (510)
T ss_pred CC
Confidence 54
No 370
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=8.3e-31 Score=328.82 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=163.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCc-C
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-I 669 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~-i 669 (1361)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.+++ .|||++|++. +
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 397 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 397 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcccc
Confidence 46999999999964 3699999999999999999999999999999999999999999999865 5999999963 4
Q ss_pred -CCCCHHHHhhcCCCC---C--HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 000671 670 -QSGSIRDNILYGKPM---D--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1361)
Q Consensus 670 -~~~ti~eni~~g~~~---~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1361)
.+.|++||+.++... . +.+.+++++.+++..+. ...+..+||||||||++||||++.+|+++||
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred CCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 457999999886431 1 22334555555553221 1246678999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeC-CeEE-EecChHHHHh
Q 000671 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLL 807 (1361)
Q Consensus 744 Dep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-G~i~-~~g~~~~l~~ 807 (1361)
||||++||+.+.+.+.+.+... . .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 468 DEPt~~LD~~~~~~l~~~l~~~--~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 468 DEPTNDLDVETLRALEEALLEF--A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred eCCCCCCCHHHHHHHHHHHHHC--C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999988755432 3 499999999999876 899999987 5876 6788877653
No 371
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=1e-30 Score=327.98 Aligned_cols=200 Identities=22% Similarity=0.342 Sum_probs=165.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCC-cC
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-WI 669 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~-~i 669 (1361)
..++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.+++ +|||+||++ .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 399 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 399 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhc
Confidence 46999999999964 3599999999999999999999999999999999999999999999865 599999996 44
Q ss_pred -CCCCHHHHhhcCCCC-----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 000671 670 -QSGSIRDNILYGKPM-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1361)
Q Consensus 670 -~~~ti~eni~~g~~~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1361)
.+.|++||+.++... .+.+.++.++..++..+. ...+..+||||||||++||||++.+|+++||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 456999999876321 122334455555553211 1256778999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeC-CeEE-EecChHHHHhc
Q 000671 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLLA 808 (1361)
Q Consensus 744 Dep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-G~i~-~~g~~~~l~~~ 808 (1361)
||||++||+.+.+.+.+.+.. . + .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+.
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~-~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLE-F-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHh-C-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999998875543 2 3 499999999999876 899999986 7876 58998887654
No 372
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=331.01 Aligned_cols=199 Identities=20% Similarity=0.379 Sum_probs=165.9
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCC--
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~-- 667 (1361)
+..|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+.+ ++||++|++
T Consensus 310 ~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~ 386 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386 (638)
T ss_pred CceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchh
Confidence 446999999999964 3699999999999999999999999999999999999999999999864 699999975
Q ss_pred cC-CCCCHHHHhhc-CCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 668 WI-QSGSIRDNILY-GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 668 ~i-~~~ti~eni~~-g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
.+ .+.|+.+++.. ......++..++++.+++..+.. ..+..+|||||||||+||||++++|+++||||
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~----------~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKV----------TEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHh----------cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 23 34588888742 22223455667777777643211 24667899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-EecChHHHH
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1361)
||++||+.+...+.+.+.. . . .|+|+||||++++.. ||+|++|++|+++ +.|+++++.
T Consensus 457 Pt~~LD~~~~~~l~~~L~~-~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 457 PTNHLDLDMRQALTEALID-F-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCCHHHHHHHHHHHHH-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999998765543 3 3 499999999999876 8999999999997 789999874
No 373
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=290.91 Aligned_cols=207 Identities=22% Similarity=0.380 Sum_probs=173.2
Q ss_pred CcEEEEeeEEEeCCCC--------CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000671 593 RSVKIQEGNFSWDPEL--------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~--------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------ 658 (1361)
..++.+|+...|+-+. ...+.+++||++++||.++|||.+|||||||-.+|++++++. |+|.+.|
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 4567778777775331 234789999999999999999999999999999999999887 9999887
Q ss_pred ----------eEEEEecCCc---CCCCCHHHHhhcCCCC------C---HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000671 659 ----------SIAYVSQTSW---IQSGSIRDNILYGKPM------D---KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 659 ----------~iayv~Q~~~---i~~~ti~eni~~g~~~------~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1361)
++-.|+|+|+ -+.+||.+-|.-|... + +++..++++..+|+.... ...
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RY 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRY 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcC
Confidence 4889999996 2568999998766321 2 345566677778876543 367
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCC
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1361)
+.+.||||||||+||||+.-+|++++|||||||||..++.++.+.+..... .|-+-+++|||+..++. ||+|+||++|
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 789999999999999999999999999999999999999999886654433 47799999999999987 8999999999
Q ss_pred eEEEecChHHHHhcCc
Q 000671 795 QITQSGNYQELLLAGT 810 (1361)
Q Consensus 795 ~i~~~g~~~~l~~~~~ 810 (1361)
+|+|+|+.+++.++..
T Consensus 504 kiVE~G~~~~if~~P~ 519 (534)
T COG4172 504 KIVEQGPTEAVFANPQ 519 (534)
T ss_pred EEeeeCCHHHHhcCCC
Confidence 9999999999987653
No 374
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.8e-30 Score=329.73 Aligned_cols=198 Identities=25% Similarity=0.406 Sum_probs=164.3
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCC
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ 670 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~ 670 (1361)
..++++|++++|+.+ .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ +|||++|++. .
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~ 583 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-D 583 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-c
Confidence 469999999999642 3589999999999999999999999999999999999999999999876 5999999873 3
Q ss_pred CCCHHHHhhc-----CCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 671 SGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 671 ~~ti~eni~~-----g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
..++.+|... .....+++++++++.+++..+.. ..++.+||||||||++||||++.+|+++||||
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3455555431 11234667788888888864432 14567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-EecChHHHH
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1361)
||++||+.+...+.+.+... + .|+|+||||++++.. ||++++|++|+++ ..|+++++.
T Consensus 654 PT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 654 PSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999887654332 3 499999999999876 8999999999998 788887753
No 375
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=331.41 Aligned_cols=202 Identities=25% Similarity=0.388 Sum_probs=170.9
Q ss_pred cEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
.++++|+++.|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|++.++|
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 488999999996422 24689999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 ---SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 ---~iayv~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.++|++|++.+++ .|+.||+.++.. .. +++..+.++.+++.+.++ .++.+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~-----------~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE-----------YQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhc-----------CCcccCCHHHHHH
Confidence 3799999998764 699999986421 11 224455666666654333 4567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
++||||++++|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++.+..||++++|++|+++++|+.++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999999999999998876654444689999999999998889999999999999999988764
No 376
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.1e-30 Score=326.33 Aligned_cols=193 Identities=23% Similarity=0.315 Sum_probs=164.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcC-CC
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QS 671 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i-~~ 671 (1361)
..++++|++++|+. ..|+++|++|++||+++|+|+||||||||+++|+|+++|++|+|.++-+++|+||++.. ++
T Consensus 339 ~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~ 414 (590)
T PRK13409 339 TLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYD 414 (590)
T ss_pred eEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCC
Confidence 35899999999963 25999999999999999999999999999999999999999999887789999999754 67
Q ss_pred CCHHHHhhcCCC-CC-HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000671 672 GSIRDNILYGKP-MD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1361)
Q Consensus 672 ~ti~eni~~g~~-~~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~sa 749 (1361)
.||+||+.++.. +. +...+++++..++.+..+ ....+|||||||||+||||+.++|++|||||||++
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~ 483 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 899999987532 22 334567777777764333 56678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 750 VDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 750 lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
||+.+...+.+.+.+... +++|+|+||||++++.. ||++++|++ ++...|+
T Consensus 484 LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 484 LDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999876655444 48999999999999876 899999965 7777776
No 377
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.9e-30 Score=329.79 Aligned_cols=200 Identities=24% Similarity=0.376 Sum_probs=164.0
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCC--
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~-- 667 (1361)
+..++++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++. .|||++|++
T Consensus 317 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~ 393 (635)
T PRK11147 317 KIVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE 393 (635)
T ss_pred CceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccc
Confidence 346899999999964 3599999999999999999999999999999999999999999999843 599999985
Q ss_pred cCCCCCHHHHhhcCCC-C--C--HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000671 668 WIQSGSIRDNILYGKP-M--D--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1361)
Q Consensus 668 ~i~~~ti~eni~~g~~-~--~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1361)
...+.|+.||+.++.+ . + ..+..+.++.+++..+. ...+..+||||||||++||||++.+|+++|
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKR----------AMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHH----------HhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3356799999987532 1 2 23344555555553221 124567899999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEe-CCeEE-EecChHHHHh
Q 000671 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE-GGQIT-QSGNYQELLL 807 (1361)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~-~G~i~-~~g~~~~l~~ 807 (1361)
|||||++||+.+.+.+.+.+ ... +.|+|+||||++++.. ||+|++|+ +|++. +.|+|++.++
T Consensus 464 LDEPt~~LD~~~~~~l~~~l-~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELL-DSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHH-HhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999998876543 332 4599999999999876 89999998 89987 5789988753
No 378
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.5e-30 Score=275.20 Aligned_cols=188 Identities=27% Similarity=0.361 Sum_probs=165.2
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecC--CcCCCCCHHHHhhc-----C
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT--SWIQSGSIRDNILY-----G 681 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~--~~i~~~ti~eni~~-----g 681 (1361)
...+|+||||++.+||.++|+|+|||||||||+.|.|.++|++|+|.++|+|++.-.- ..-++.|-||||.+ |
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 3468999999999999999999999999999999999999999999999999976654 34467799999975 2
Q ss_pred C--CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHH
Q 000671 682 K--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759 (1361)
Q Consensus 682 ~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~ 759 (1361)
. ..-+++++++++-..|.+.++ .+..+.|-|++.|++.|-|...+|||||+||.++.-|+.-.++-.
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~-----------~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFID-----------QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhh-----------CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 2 233567888888888887765 467899999999999999999999999999999999999888766
Q ss_pred HHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 760 NECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 760 ~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+.+.+...+++|+|+||||++.+++ ||++++|++|+|...|++++..+
T Consensus 188 ~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 6655555788999999999999987 99999999999999999999874
No 379
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.6e-30 Score=275.86 Aligned_cols=152 Identities=25% Similarity=0.303 Sum_probs=132.5
Q ss_pred EeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-eEEEEecCCcCCCCCHHH
Q 000671 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQSGSIRD 676 (1361)
Q Consensus 598 ~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-~iayv~Q~~~i~~~ti~e 676 (1361)
.|++++|+. .+++++ ++++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------- 71 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC--------
Confidence 477888864 357888 499999999999999999999999999999999999999998 5899998652
Q ss_pred HhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHH
Q 000671 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756 (1361)
Q Consensus 677 ni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~ 756 (1361)
||||||||++||||++.+|++++|||||++||+.+.+
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-cEEEEEccCchHHhh-cCeEEEEeCCeEEEe--cChHH
Q 000671 757 TLFNECVMAALEK-KTVILVTHQVEFLSE-VDRILVLEGGQITQS--GNYQE 804 (1361)
Q Consensus 757 ~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~--g~~~~ 804 (1361)
.+.+.+.....++ +|+|++||+++.+.. ||++++|+++..+.+ |.+..
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 9887665544454 899999999999885 899999998766543 54443
No 380
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=322.47 Aligned_cols=196 Identities=21% Similarity=0.340 Sum_probs=156.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~------------- 659 (1361)
..|+++|+++.+ .++|+|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++|.
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 368999999873 24899999999999999999999999999999999999999999999861
Q ss_pred -EEEEecCCc----CCCCCHHHHhhcC-----CC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 660 -IAYVSQTSW----IQSGSIRDNILYG-----KP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 660 -iayv~Q~~~----i~~~ti~eni~~g-----~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
++|++|++- +.+.|+.+|+.+. .. .+. ++.++.++..++. +. ....+..+||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------~~-~~~~~~~~LS 393 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK---------TP-GHRTQIGSLS 393 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCcc---------CC-CcccccccCC
Confidence 899999852 3456777774321 11 111 1222333333321 11 1246778999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
||||||++||||+..+|+|+||||||++||+.+.+.+++.+.....+|+|+|++|||++++.. ||++++|++|+++..+
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999987665545568999999999999865 8999999999999877
Q ss_pred ChH
Q 000671 801 NYQ 803 (1361)
Q Consensus 801 ~~~ 803 (1361)
+.+
T Consensus 474 ~~~ 476 (491)
T PRK10982 474 DTK 476 (491)
T ss_pred ccc
Confidence 654
No 381
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=1.2e-30 Score=323.58 Aligned_cols=194 Identities=24% Similarity=0.374 Sum_probs=158.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-CCcEEEEcC-------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-~~G~v~~~g------------- 658 (1361)
..++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 46999999999964 3589999999999999999999999999999999998876 699998865
Q ss_pred -eEEEEecCCcC-C--CCCHHHHhhcCC----C----CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 -SIAYVSQTSWI-Q--SGSIRDNILYGK----P----MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 -~iayv~Q~~~i-~--~~ti~eni~~g~----~----~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++.+ + ..++++++.++. . .. +++.+++++.+++..+.. ..++.+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgG 405 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA----------DAPFHSLSWG 405 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc----------cCchhhCCHH
Confidence 28999999754 2 247777775431 0 11 234566677776654221 2466789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCC-cEEEEEccCchHHhh--cCeEEEEeCCeEEEe
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~ 799 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.....++ .|+|++|||++++.. +|++++|++|+|++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999987766554455 469999999999874 699999999998764
No 382
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2.4e-30 Score=291.85 Aligned_cols=186 Identities=23% Similarity=0.290 Sum_probs=149.7
Q ss_pred eeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEE-----------EcC---------
Q 000671 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG--------- 658 (1361)
Q Consensus 599 ~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~-----------~~g--------- 658 (1361)
+++++|+.+ .++|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|
T Consensus 5 ~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 5 EPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred CcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 678888643 35899999 4999999999999999999999999999999999995 434
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|++..++.++.+|+.+... ..+++..++++.+++.+.. ..++.+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVL-----------DRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 2688899876666677777665321 1234566777777664322 35677999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEe
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1361)
|||++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|+ |++.+.
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 999999999999999999999999999887665444458999999999999885 89999995 556543
No 383
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=3.3e-30 Score=349.26 Aligned_cols=204 Identities=22% Similarity=0.332 Sum_probs=172.0
Q ss_pred cEEEEeeEEEeCCC-CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc---CCCcEEEEcC---------eE
Q 000671 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG---------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~---~~~G~v~~~g---------~i 660 (1361)
.++++|++++++.+ ..+++|+|+|+++++||+++|+|||||||||||++|+|..+ +++|+|.++| .+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 47899999999632 23579999999999999999999999999999999999997 6889999988 38
Q ss_pred EEEecCCc-CCCCCHHHHhhcCC------CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 661 AYVSQTSW-IQSGSIRDNILYGK------PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 661 ayv~Q~~~-i~~~ti~eni~~g~------~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
|||+|++. +++.||+||+.|+. ..++ ++.+++++..+|.+. .++.+|+.+.+||||||||++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-------ADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------CCCeeCCCCCCCCHHHhhHHH
Confidence 99999864 56789999999752 1222 234566666666432 356788888899999999999
Q ss_pred HHHHHccCCC-EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHH--hhcCeEEEEeCC-eEEEecChHH
Q 000671 730 LARAVYNDAD-IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL--SEVDRILVLEGG-QITQSGNYQE 804 (1361)
Q Consensus 730 lARal~~~~~-illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l--~~~d~i~~l~~G-~i~~~g~~~~ 804 (1361)
||||++.+|+ +++|||||||||+.++..+.+.+.+...+|+|+|++|||++.. ..+|++++|++| ++++.|+.++
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9999999997 9999999999999999999887766656799999999999863 568999999987 9999998743
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=1e-29 Score=293.69 Aligned_cols=205 Identities=23% Similarity=0.400 Sum_probs=143.1
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCC
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS 671 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~ 671 (1361)
...|.++|.++++.. .+.++|..|++.+|+.++|+|+|||||||+|++|.|-..|..-++. +...+++.---.
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d----~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID----FYLLSREIEPSE 145 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc----hhhhcccCCCch
Confidence 357999999999874 4689999999999999999999999999999999998888655442 233333321111
Q ss_pred C-CHHHHhhcCCCCCHHHHHHHHH----Hhc---ch------------------HHHhc--CCCC-CCccccCCCCCCCh
Q 000671 672 G-SIRDNILYGKPMDKARYDKAIK----ACA---LD------------------KDINN--FDHG-DLTEIGQRGLNLSG 722 (1361)
Q Consensus 672 ~-ti~eni~~g~~~~~~~~~~~~~----~~~---l~------------------~dl~~--l~~g-d~t~ig~~g~~LSg 722 (1361)
. +++.-+.+.. -...+++...+ +|. .+ ..... ...| ......++..+|||
T Consensus 146 ~~av~~v~~~~~-~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 146 KQAVQAVVMETD-HERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSG 224 (614)
T ss_pred HHHHHHHhhhhH-HHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCc
Confidence 2 2332222211 01111111111 110 00 00000 0011 11223466789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCc-EEEEEccCchHHhh-cCeEEEEeCCe-EEEe
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSE-VDRILVLEGGQ-ITQS 799 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~-tvilvtH~~~~l~~-~d~i~~l~~G~-i~~~ 799 (1361)
|||.|++|||||..+|+++||||||++||..+..++-+.+.+ .++ ++++++|..++++. |.+|+-|++++ +.+.
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k---~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAK---YDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHh---ccCceEEEEecchhhhhhHhhhhheecccceeeec
Confidence 999999999999999999999999999999999998654432 244 89999999999997 89999999999 6789
Q ss_pred cChHHHHh
Q 000671 800 GNYQELLL 807 (1361)
Q Consensus 800 g~~~~l~~ 807 (1361)
|+|+++..
T Consensus 302 Gnydqy~~ 309 (614)
T KOG0927|consen 302 GNYDQYVK 309 (614)
T ss_pred CCHHHHhh
Confidence 99988764
No 385
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=5.3e-30 Score=271.76 Aligned_cols=150 Identities=26% Similarity=0.421 Sum_probs=123.7
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEecCCcCCCCCHHHHhhc
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQSGSIRDNILY 680 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--------iayv~Q~~~i~~~ti~eni~~ 680 (1361)
..++|+|+||++++|++++|+|||||||||||+++++ ++|++.+.|. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH---------------
Confidence 3578999999999999999999999999999999974 6899887764 444443
Q ss_pred CCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCcCHHHHHHH
Q 000671 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND--ADIYLFDDPFSAVDAHTAATL 758 (1361)
Q Consensus 681 g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~--~~illLDep~salD~~~~~~i 758 (1361)
.++++..++.. . ..++++.+||||||||++||||++.+ |+++||||||++||+...+.+
T Consensus 68 ---------~~~l~~~~L~~---------~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l 128 (176)
T cd03238 68 ---------LQFLIDVGLGY---------L-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL 128 (176)
T ss_pred ---------HHHHHHcCCCc---------c-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH
Confidence 23444444321 1 13467889999999999999999999 999999999999999999998
Q ss_pred HHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeE
Q 000671 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1361)
Q Consensus 759 ~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1361)
.+.+.....+|+|+|++||+++.+..||++++|++|+.
T Consensus 129 ~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 129 LEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 87665544468999999999999888999999977654
No 386
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.1e-27 Score=259.38 Aligned_cols=399 Identities=18% Similarity=0.196 Sum_probs=267.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHH
Q 000671 940 VYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAAS 1019 (1361)
Q Consensus 940 iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~ 1019 (1361)
.++++..+..+...+.......+|.+...+++.++.++++.+|+.-+++-..||++.++++|+.+|...+ ..+..+.+.
T Consensus 53 ~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~-s~lp~~~qa 131 (546)
T COG4615 53 EFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPELVQA 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehH-hhhHHHHHH
Confidence 3444444444455566677788899999999999999999999999999999999999999999998433 334556777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHH
Q 000671 1020 GTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1361)
Q Consensus 1020 ~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~ 1099 (1361)
.+..+++.+.+++.+|++.++.+..+++..+.+.+.++..-+-.+...++...+.++++-.++|.+..+..+...+....
T Consensus 132 ~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~ 211 (546)
T COG4615 132 IILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHN 211 (546)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHh
Confidence 77888999999999999877776666655554443333333333334455667889999999999998877654433322
Q ss_pred HHHHHHHH--h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCccCHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1100 YLKLVDID--A----SLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIP-RGYVAPGLVGLSLSYAFTLTGTQVFLSR 1172 (1361)
Q Consensus 1100 ~~~~~d~~--~----~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~vl~~-~g~is~g~~gl~l~ya~~l~~~l~~l~~ 1172 (1361)
..-.-|.+ . +..........|-.+.+-.+..+. .++.. .+--+...+.....-.+-+-+|+..++.
T Consensus 212 ~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlv-------f~lal~~~w~st~~a~tivlvlLflr~pL~s~vg 284 (546)
T COG4615 212 NLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLV-------FWLALSLGWASTNVAATIVLVLLFLRTPLLSAVG 284 (546)
T ss_pred hhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHh
Confidence 21111111 1 111111123445443321111111 11110 1101111111122223445688999999
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCC
Q 000671 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252 (1361)
Q Consensus 1173 ~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrT 1252 (1361)
..-.+-++-+|.+||.++..-|+.+ ......+-++| -.||++||.|+|.++. -=+.-||++|+.||.|=|+|.+
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a--~~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKA--DFPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCccc--cCCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCC
Confidence 9999999999999999876522211 11111222235 3699999999998764 3577899999999999999999
Q ss_pred CCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCC
Q 000671 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNS 1332 (1361)
Q Consensus 1253 GSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~ 1332 (1361)
||||||++++|.|+|.|++|+|++||.+++.=++++.|+-++-|.-|-+||+.++ .|.+..+.+.|..-|++-.-.
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel~ 434 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELA 434 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999876 344457777776655543221
Q ss_pred CCCCcccccCCchhhhhhcccccccee
Q 000671 1333 RNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
..+.......+- -.+|-|||.++.
T Consensus 435 ~ktsl~d~~fs~---~kLStGQkKRlA 458 (546)
T COG4615 435 HKTSLNDGRFSN---LKLSTGQKKRLA 458 (546)
T ss_pred hhhcccCCcccc---cccccchHHHHH
Confidence 222221111111 136778887753
No 387
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=7.9e-30 Score=264.16 Aligned_cols=189 Identities=29% Similarity=0.397 Sum_probs=154.7
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEecCCc---CCCC
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSW---IQSG 672 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~~~---i~~~ 672 (1361)
++++|+++|++|++|+++.|+|.||+|||||+++|.|.++|++|+|.++| .++=|+|+|- ..+.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 46799999999999999999999999999999999999999999999988 2778999995 4678
Q ss_pred CHHHHhhcCC----C--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000671 673 SIRDNILYGK----P--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1361)
Q Consensus 673 ti~eni~~g~----~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1361)
||.||+.... . +....-.+ ......+.+..++.|-...++.+..-|||||||-++|+.|..+.|+|++|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~--~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNER--RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHH--HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 9999997531 1 11100000 01112234566677776677788888999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHH-hhcCeEEEEeCCeEEEe
Q 000671 747 FSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFL-SEVDRILVLEGGQITQS 799 (1361)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~ 799 (1361)
|+||||+++..+++.-.+...+ +-|.++|||+++.. ..-+|.++|++|+|+.+
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999998876555444 56999999999874 55799999999999964
No 388
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6e-30 Score=272.76 Aligned_cols=197 Identities=23% Similarity=0.386 Sum_probs=161.6
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
.+.-|+++|+++.|.. +++|+|||++|++||..+|+|+|||||||||+.+.|+.+|.+|.+.+-|
T Consensus 28 ~~~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 28 NEPLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CcceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 3456999999999975 4699999999999999999999999999999999999999999998765
Q ss_pred --eEEEEecC---CcCCCCCHHHHhhcCC---------CCCHHHHH---HHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 --SIAYVSQT---SWIQSGSIRDNILYGK---------PMDKARYD---KAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 --~iayv~Q~---~~i~~~ti~eni~~g~---------~~~~~~~~---~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
+||||+-+ -...+.+++|-|+-|. +++++.++ ..++.+++.. + .++.-.+||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-l----------a~r~~~~LS 173 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-L----------ADRPFGSLS 173 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-h----------ccCchhhcC
Confidence 48999853 2334668888887431 34444443 3444454443 1 225567899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC--CcEEEEEccCchHHhhc-CeEEEEeCCeEEE
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEV-DRILVLEGGQITQ 798 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~ 798 (1361)
-|||||+-||||++.+|.++|||||+++||...++.+.+.+...... +.|+|+|||+.+.++.| ++++.+++|+++.
T Consensus 174 ~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 174 QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 99999999999999999999999999999999998888776655443 78999999999998875 9999999999998
Q ss_pred ecC
Q 000671 799 SGN 801 (1361)
Q Consensus 799 ~g~ 801 (1361)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
No 389
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=5.8e-29 Score=242.72 Aligned_cols=183 Identities=23% Similarity=0.356 Sum_probs=152.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC---CcEEEEcC-----------eE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG-----------SI 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~---~G~v~~~g-----------~i 660 (1361)
..++|++..-+. .-.|-|+|++|.+||++-+.||+|||||||++-+.|.+.+. +|++.+++ ++
T Consensus 3 l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 3 LCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred eeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 457788866543 45899999999999999999999999999999999998864 79998876 59
Q ss_pred EEEecCCcCCCC-CHHHHhhcCCCCC------HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 661 AYVSQTSWIQSG-SIRDNILYGKPMD------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 661 ayv~Q~~~i~~~-ti~eni~~g~~~~------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
|+.+|++|+|.. +|-+|++|..|-+ +...+.+++..+|...+.+. +.+||||||.||+|-|+
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----------P~tlSGGQrARvaL~R~ 148 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQD-----------PATLSGGQRARVALLRA 148 (213)
T ss_pred eeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcC-----------hhhcCcchHHHHHHHHH
Confidence 999999999865 9999999986632 23345677778887766644 45899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEE
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVL 791 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l 791 (1361)
+++.|+.++||||||.||..-+.+..+.++.... .|-.+|+||||.+.++.-.||+.|
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999988887666665543 588999999999988854666554
No 390
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=5.8e-29 Score=250.15 Aligned_cols=189 Identities=23% Similarity=0.351 Sum_probs=156.5
Q ss_pred CcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEecCCcC-CCC--CH
Q 000671 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWI-QSG--SI 674 (1361)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~~~i-~~~--ti 674 (1361)
.+.+.+||++++|+..+|+|.||||||||.++|.|.++|++|+|.++| .|-+++|+|.- +|- .|
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 478999999999999999999999999999999999999999999987 48999999853 332 12
Q ss_pred HHHhhcC----CCCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000671 675 RDNILYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1361)
Q Consensus 675 ~eni~~g----~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1361)
-.-+-+. ..++ .+++.+.++..+|.+|-.. -++..||-||||||+|||||.-+|+|++.||.
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan----------~~~~~la~~QKQRVaLARALIL~P~iIIaDeA 176 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN----------YYPHMLAPGQKQRVALARALILRPKIIIADEA 176 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccc----------cchhhcCchhHHHHHHHHHHhcCCcEEEehhh
Confidence 1111121 1222 3455667777777666443 35678999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 747 FSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
+.+||...+.++.+..+... ..|-.-|.|+.++..+++ +|.|+||++|+++|.|+..+++...
T Consensus 177 l~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred hhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 99999999999987666543 348899999999999998 7999999999999999999998754
No 391
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=1.6e-28 Score=331.33 Aligned_cols=204 Identities=24% Similarity=0.371 Sum_probs=168.1
Q ss_pred cEEEEeeEEEeCCC----------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc--CCCcEEEEcC---
Q 000671 594 SVKIQEGNFSWDPE----------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYG--- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~----------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~--~~~G~v~~~g--- 658 (1361)
.+.++|+++..+.. ....+|+|+|+++++|++++|+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58899999887532 12369999999999999999999999999999999999976 3789999987
Q ss_pred -------eEEEEecCCcC-CCCCHHHHhhcCC------CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCC-CC
Q 000671 659 -------SIAYVSQTSWI-QSGSIRDNILYGK------PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG-LN 719 (1361)
Q Consensus 659 -------~iayv~Q~~~i-~~~ti~eni~~g~------~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g-~~ 719 (1361)
.+|||+|++.+ .+.||+||+.|+. ..+. ++.+++++..+|.+.. ++.+|..+ ..
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~~~~ 1019 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPGVTG 1019 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCCCCC
Confidence 28999999755 5679999998742 1222 2356677777775432 34555444 68
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchH-H-hhcCeEEEEeC-CeE
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEG-GQI 796 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~-G~i 796 (1361)
||||||||++|||+|+.+|++++|||||||||+.++..+.+.+.+...+|+|+|++||+++. + ..+|++++|++ |++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999988776665678999999999984 3 56899999986 899
Q ss_pred EEecChHH
Q 000671 797 TQSGNYQE 804 (1361)
Q Consensus 797 ~~~g~~~~ 804 (1361)
++.|+..+
T Consensus 1100 v~~G~~~~ 1107 (1470)
T PLN03140 1100 IYSGPLGR 1107 (1470)
T ss_pred EEECCccc
Confidence 99998653
No 392
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.1e-28 Score=257.02 Aligned_cols=142 Identities=39% Similarity=0.606 Sum_probs=126.8
Q ss_pred EEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEE
Q 000671 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYV 663 (1361)
Q Consensus 597 ~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~-------------iayv 663 (1361)
++|++|.|+.. ++++++|+++++|++++|+|+||||||||+++|.|++++.+|+|.++|. ++|+
T Consensus 2 ~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 67899999643 5899999999999999999999999999999999999999999999873 3444
Q ss_pred ecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 000671 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1361)
Q Consensus 664 ~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1361)
+| ||||||||++||||++.+|++++|
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44 999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 744 Dep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
||||++||+.+...+.+.+.....+++|+|++||++++++. +|++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999877665444446899999999999988 59999999875
No 393
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=4.3e-27 Score=286.29 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=171.7
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCC-
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS- 667 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~- 667 (1361)
.+..++++|++++|+.+ +++++++||.|.+|+.++|+||||+||||||+.|+|...|.+|+|.+.. ++||.+|+.
T Consensus 318 g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~ 395 (530)
T COG0488 318 GKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD 395 (530)
T ss_pred CCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh
Confidence 45679999999999764 5799999999999999999999999999999999999999999998765 599999985
Q ss_pred -cCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 668 -WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 668 -~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
+..+.|+.|++.-..+ ..+..++..+..+.+..+-.. .+...||||||.|+.||+.+.++|.+|||||
T Consensus 396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~----------~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQE----------KPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHh----------CchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 3456699999987654 346778888888888765442 5677899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEe-cChHHHHhc
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS-GNYQELLLA 808 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~-g~~~~l~~~ 808 (1361)
||++||..+...+-+.+. . -.-|+|+||||.+++.. |++|+.+++ ++... |+|++..+.
T Consensus 466 PTNhLDi~s~~aLe~aL~-~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 466 PTNHLDIESLEALEEALL-D--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCccCCHHHHHHHHHHHH-h--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999999988754332 1 13499999999999988 799999999 66654 898887653
No 394
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=242.66 Aligned_cols=201 Identities=21% Similarity=0.343 Sum_probs=167.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
..++++|++.+++. -.+|+|+||++.+||+-+|+||||+||||++-.|.|-.+|+.|+|.++|
T Consensus 4 ~iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr 80 (249)
T COG4674 4 IILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80 (249)
T ss_pred ceEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHH
Confidence 35788999999874 4689999999999999999999999999999999999999999999988
Q ss_pred -eEEEEecCCcCC-CCCHHHHhhcCCC---------------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 -~iayv~Q~~~i~-~~ti~eni~~g~~---------------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.||-=+|.|-+| +.||+||+..... ..++++++++...+|.+.-. .....||
T Consensus 81 ~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-----------~~A~~LS 149 (249)
T COG4674 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-----------RLAALLS 149 (249)
T ss_pred hccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-----------hhhhhhc
Confidence 277789999876 6699999864321 22346777777777654322 3456899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
-||||++.|+.-+.++|++++||||.+|+-.......- ++++...+++++++|.||+++++. ||+|-||+.|.+...|
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecc
Confidence 99999999999999999999999999999444444433 455666678899999999999987 8999999999999999
Q ss_pred ChHHHHhc
Q 000671 801 NYQELLLA 808 (1361)
Q Consensus 801 ~~~~l~~~ 808 (1361)
+.+++.++
T Consensus 229 sld~v~~d 236 (249)
T COG4674 229 SLDEVQND 236 (249)
T ss_pred cHHHhhcC
Confidence 99998654
No 395
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=7.5e-26 Score=285.86 Aligned_cols=191 Identities=24% Similarity=0.358 Sum_probs=154.1
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC---CCcEEEEcC----------eEEEEecCCc-CCCCCHH
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG----------SIAYVSQTSW-IQSGSIR 675 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~---~~G~v~~~g----------~iayv~Q~~~-i~~~ti~ 675 (1361)
..+|+|++.-+++|+.+.+.||.||||||||+++.|..+. ..|+|..+| .++|++|+-+ +...|||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4689999999999999999999999999999999999864 356888876 5999999865 5678999
Q ss_pred HHhhcCC-------CCC---HHHHH-----HHHHHhcchHHHhcCCCCCCccccCCC-CCCChHHHHHHHHHHHHccCCC
Q 000671 676 DNILYGK-------PMD---KARYD-----KAIKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 676 eni~~g~-------~~~---~~~~~-----~~~~~~~l~~dl~~l~~gd~t~ig~~g-~~LSgGQkqRv~lARal~~~~~ 739 (1361)
|-+.|.. .++ +.+|. .+++..+ |.+..+|.+|... ...|||||.||++|-++..++.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilG-------L~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~ 280 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILG-------LDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS 280 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhC-------chhhccceecccccccccCcccceeeeeeeeecCcc
Confidence 9998842 122 22222 2223333 4455677888665 5799999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCch--HHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVE--FLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~--~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++.+||+|.|||..++-++.+.+.... .-+.|.++.-|+.. .....|.|.+|.+|+++++|+.++.+.
T Consensus 281 ~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 281 ILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999988876554433 34778999989875 356689999999999999999998863
No 396
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=6.3e-28 Score=258.38 Aligned_cols=189 Identities=23% Similarity=0.325 Sum_probs=148.9
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEEEec---C-CcCCCC
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQ---T-SWIQSG 672 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~------------iayv~Q---~-~~i~~~ 672 (1361)
..++.+||||+||+|++++.+|+||+||||+||+|.|.+.|++|.|.++|. ++||.- + -|-.+
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech-
Confidence 346899999999999999999999999999999999999999999999983 555541 2 23222
Q ss_pred CHHHHhhcC---CCCCHHHH----HHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 673 SIRDNILYG---KPMDKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 673 ti~eni~~g---~~~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
+.|-+.-. .+...++| +...+..+++..+. .+...||-|||.|+.||.||+++|+|++|||
T Consensus 115 -~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk-----------~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE 182 (325)
T COG4586 115 -ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK-----------WPVRKLSLGQRMRAELAAALLHPPKVLFLDE 182 (325)
T ss_pred -hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhh-----------hhhhhccchHHHHHHHHHHhcCCCcEEEecC
Confidence 33322211 12233333 34444444544443 5678999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 746 PFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
||-+||..++..|.+.+.... .++.||+++||+++-+.. ||||+.|++|++++.|+.+++.++-+
T Consensus 183 pTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 183 PTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999877655433 358899999999998876 99999999999999999999876543
No 397
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=4.4e-27 Score=294.46 Aligned_cols=207 Identities=27% Similarity=0.428 Sum_probs=175.6
Q ss_pred CcEEEEeeEEEeCCC--CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC---CCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~--~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~---~~G~v~~~g--------- 658 (1361)
..+.++|.+.+-+.+ ..+.+|+|||.++++||+.||.||+||||||||++|+|-.+. .+|+|.++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 457788888776554 246799999999999999999999999999999999999874 799999999
Q ss_pred -eEEEEecCCc-CCCCCHHHHhhcC------CCCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCC-CCCCChHHH
Q 000671 659 -SIAYVSQTSW-IQSGSIRDNILYG------KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQR-GLNLSGGQK 725 (1361)
Q Consensus 659 -~iayv~Q~~~-i~~~ti~eni~~g------~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~-g~~LSgGQk 725 (1361)
..|||.|+.. +.+.||+|++.|. ...+ +++++++++..+|. +. .+|.||.. ...+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~------~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KC------ADTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hh------ccceecCCCCCccccchh
Confidence 3899999865 5678999999874 2122 45677777777776 33 35666643 358999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchH--HhhcCeEEEEeCCeEEEecChH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF--LSEVDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~--l~~~d~i~~l~~G~i~~~g~~~ 803 (1361)
+||++|.-+..||.|++|||||||||+.++.++.+.+.+...+|||||++-|+++. ....|++++|.+|++++.|+++
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 99999999999999999999999999999999998877777789999999999964 4668999999999999999998
Q ss_pred HHH
Q 000671 804 ELL 806 (1361)
Q Consensus 804 ~l~ 806 (1361)
++.
T Consensus 257 ~~~ 259 (613)
T KOG0061|consen 257 ELL 259 (613)
T ss_pred HHH
Confidence 775
No 398
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=6.8e-27 Score=259.95 Aligned_cols=180 Identities=22% Similarity=0.290 Sum_probs=124.1
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHH-HHHhC--------------------CccCCCcEEEEcC-eEEEEecC
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL-YAILG--------------------EIPKISGTVNLYG-SIAYVSQT 666 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl-~~llg--------------------~~~~~~G~v~~~g-~iayv~Q~ 666 (1361)
+.++|+|+||++++||+++|+|+||||||||+ ..+.+ ...|..+. +.| ..++..|+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 84 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS--IEGLSPAIAIDQ 84 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc--ccCCCceEEecC
Confidence 35689999999999999999999999999996 33221 11111111 112 23444444
Q ss_pred CcC-C--CCCHH---HHhhc-CCCCC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 000671 667 SWI-Q--SGSIR---DNILY-GKPMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1361)
Q Consensus 667 ~~i-~--~~ti~---eni~~-g~~~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1361)
+.. . ..++. +...+ ...+. .....+.++.+++.+. ....++.+||||||||++||||++.
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 85 KTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL----------TLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcc----------cccCccCcCCHHHHHHHHHHHHHHh
Confidence 431 1 12322 21111 10011 1111233333333211 1346788999999999999999999
Q ss_pred CC--CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEE------eCCeEEEec
Q 000671 737 DA--DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL------EGGQITQSG 800 (1361)
Q Consensus 737 ~~--~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l------~~G~i~~~g 800 (1361)
+| +++||||||++||+.+.+.+.+.+.....+|.|+|++||+++.+..||++++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 59999999999999999999887665545689999999999998889999999 999999876
No 399
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=1.4e-27 Score=272.02 Aligned_cols=145 Identities=39% Similarity=0.660 Sum_probs=131.2
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
|+|+|+||+++|+++.+++|+|+||+|++||++|||||||||||||+++|+|+++ .+|+|+|||+|+.+++++++|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 6899999999997656679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred ceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC--CCC-cccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR--NSR-IDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++|||+|.+|++|+++||+|++..+++++|++++.++-.. +.. -++|+.-.+.|.++|.||||+|.
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~ 148 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMC 148 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 9999999999999999999998889999999999885321 222 25677777889999999999985
No 400
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.4e-27 Score=276.81 Aligned_cols=177 Identities=18% Similarity=0.236 Sum_probs=140.8
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCCC------C---CCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEE
Q 000671 1179 NYIISVERIKQFMHIPPEPPAIVE------D---KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249 (1361)
Q Consensus 1179 ~~~~sveRi~e~~~~~~E~~~~~~------~---~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIV 1249 (1361)
..+++++|+.+|+..+.|.....+ . ...+..||..|.|+|+|++++|+++.+++|+|+||+|++||++|||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 456778888888877665432111 1 0113469999999999999999765567999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcccC-----CCCcEEEEcCeeCC--CCChHHHhhcCceecCcccccccchhhhcC--C-CCCCCH
Q 000671 1250 GRTGSGKTTLISALFRLVE-----PAGGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--P-LGLYSD 1319 (1361)
Q Consensus 1250 GrTGSGKSTL~~~L~R~~e-----p~~G~I~IDGvDI~--~i~l~~LR~~isiIpQdp~LF~GTIR~NLd--P-~~~~sD 1319 (1361)
||||||||||+++|+|+++ |.+|+|.|||+||+ ++++.++|+++++|||+|.+|++|+|+||+ | +..++|
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 567789999999999999999999999998 4 334666
Q ss_pred HHH-----HHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1320 DEI-----WKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1320 eeI-----~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++. .++++.++-.. +++..-.+.+-++|.||||+|.
T Consensus 195 ~~~~~~~~~~~l~~~~L~~----~l~~~~~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 195 RKILEKIVEKSLKSAALWD----EVKDDLDKAGNALSGGQQQRLC 235 (329)
T ss_pred HHHHHHHHHHHHHHcCCcc----hhhhhhhCCcccCCHHHHHHHH
Confidence 665 44566665210 2334456789999999999974
No 401
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.7e-26 Score=238.77 Aligned_cols=201 Identities=24% Similarity=0.338 Sum_probs=164.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCC--ccCCCcEEEEcCe------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYGS------------ 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~--~~~~~G~v~~~g~------------ 659 (1361)
-++++|.+.+-..+ +++|+++||+|++||+.+|.||||||||||.++|+|. |++++|+|.++|.
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 36788888877542 4699999999999999999999999999999999998 4789999999982
Q ss_pred --EEEEecCCc-CCCCCHHHHhhcCC----CC---C---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 660 --IAYVSQTSW-IQSGSIRDNILYGK----PM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 660 --iayv~Q~~~-i~~~ti~eni~~g~----~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
|...+|.|. +..-|+.+-+.-+. .. . .++.++.++..++++++..- .+ ...+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R------~v---N~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER------YV---NEGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc------cc---CCCcCcchHH
Confidence 888999986 55568888876431 11 1 33455566666776644321 11 2469999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhc--CeEEEEeCCeEEEecChHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV--DRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~--d~i~~l~~G~i~~~g~~~~ 804 (1361)
|..|+.+++.+|++.+||||-||||...-+.+.+.+.....++.+++++||.-..+... |++.+|-+|+|+.+|.+ +
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 99999999999999999999999999999988766555556799999999999999875 99999999999999998 6
Q ss_pred HH
Q 000671 805 LL 806 (1361)
Q Consensus 805 l~ 806 (1361)
+.
T Consensus 231 l~ 232 (251)
T COG0396 231 LA 232 (251)
T ss_pred HH
Confidence 64
No 402
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3e-26 Score=263.84 Aligned_cols=192 Identities=27% Similarity=0.412 Sum_probs=139.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEE-------cCeEEEEe
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL-------YGSIAYVS 664 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~-------~g~iayv~ 664 (1361)
..+|.++|.+.+|.. +..|++-++++..|-.+++||+||+||||||++|.. |+|.. .|.--..-
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~ 148 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL 148 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH
Confidence 356888888888874 468999999999999999999999999999999987 33321 11111111
Q ss_pred cCCcCCCCCHHHHhhcCC-CC----C-HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 665 QTSWIQSGSIRDNILYGK-PM----D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 665 Q~~~i~~~ti~eni~~g~-~~----~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
|+- +...+-+.-.+.-. .. . ++-|.+++.-.+..++....| ..+||||-|-|++||||+..+|
T Consensus 149 ~~~-l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAlf~~p 217 (582)
T KOG0062|consen 149 QSV-LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARALFAKP 217 (582)
T ss_pred hhh-hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHHhcCC
Confidence 111 12223333332211 11 1 233555777778888777644 4579999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-EecChHHHH
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1361)
|||||||||+.||.....++-+.+. . .+.|+|+|+||..||.. |..|+.+++-++- +.|++++..
T Consensus 218 DlLLLDEPTNhLDv~av~WLe~yL~-t--~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 218 DLLLLDEPTNHLDVVAVAWLENYLQ-T--WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred CEEeecCCcccchhHHHHHHHHHHh-h--CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 9999999999999999999755432 2 24799999999999988 7888888886664 566666554
No 403
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=5.9e-26 Score=254.84 Aligned_cols=182 Identities=24% Similarity=0.368 Sum_probs=130.8
Q ss_pred CcccceeEEecCCeEEEEeCCCCCCHHHHHHHHh--------CCc--cCCCcEEEE----cCeEEEEecCC---------
Q 000671 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEI--PKISGTVNL----YGSIAYVSQTS--------- 667 (1361)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ll--------g~~--~~~~G~v~~----~g~iayv~Q~~--------- 667 (1361)
..|+|+|++||.|.+++|+|.+|||||||++.++ +.. .|..++... -..+-+|.|.|
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999999663 111 122121110 01233333333
Q ss_pred --------------------------------------cCCCCCHHHHhhcCCCCC-HHHHHHHHHHhcchHHHhcCCCC
Q 000671 668 --------------------------------------WIQSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHG 708 (1361)
Q Consensus 668 --------------------------------------~i~~~ti~eni~~g~~~~-~~~~~~~~~~~~l~~dl~~l~~g 708 (1361)
.+.+.|+.||+.|...+. .++..+.++.++|.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~--------- 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLG--------- 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCc---------
Confidence 234556666655432211 12223333333332
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhc
Q 000671 709 DLTEIGQRGLNLSGGQKQRIQLARAVYND---ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV 785 (1361)
Q Consensus 709 d~t~ig~~g~~LSgGQkqRv~lARal~~~---~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~ 785 (1361)
+. ..+++..+||||||||++||||+.++ |++++|||||++||++..+.+.+.+.+...+|.|+|++||+++++..|
T Consensus 160 ~l-~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 160 YI-KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred hh-hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 21 23577889999999999999999996 799999999999999999999876655555689999999999999889
Q ss_pred CeEEEE------eCCeEEEecCh
Q 000671 786 DRILVL------EGGQITQSGNY 802 (1361)
Q Consensus 786 d~i~~l------~~G~i~~~g~~ 802 (1361)
|++++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999874
No 404
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=7.9e-26 Score=225.83 Aligned_cols=217 Identities=24% Similarity=0.334 Sum_probs=163.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
-+++.+.+..|.+. ...+|+||++.|||..+|||.+||||||||++|.+-+.|+.|+|..+.
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 46788899999764 368999999999999999999999999999999999999999998742
Q ss_pred -------eEEEEecCCcC---CCCCHHHHhhcC-CCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 -------SIAYVSQTSWI---QSGSIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 -------~iayv~Q~~~i---~~~ti~eni~~g-~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.-|+|-|+|-- ...|.-.||--- ...-...|-++-... .+.++..+ =|.+.|.+.+.+.|||++||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a--~~WL~~VE-I~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEA--QDWLEEVE-IDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHH--HHHHHhcc-cCcccccCcccccchHHHHH
Confidence 37999999842 222333444110 001112222221111 11222211 24456778899999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
+.|||-+...|+++++||||-+||..++..+.+.+..... -+-.+|+||||+...+- +||..||++|+++|+|-.+.+
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccc
Confidence 9999999999999999999999999999999875543332 37799999999999886 899999999999999998888
Q ss_pred HhcCc-hHHHHH
Q 000671 806 LLAGT-AFEQLV 816 (1361)
Q Consensus 806 ~~~~~-~~~~~~ 816 (1361)
+++.. .|.+++
T Consensus 240 LDDP~hPYTQLL 251 (258)
T COG4107 240 LDDPHHPYTQLL 251 (258)
T ss_pred ccCCCCchHHHH
Confidence 76543 455554
No 405
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-25 Score=229.37 Aligned_cols=164 Identities=24% Similarity=0.352 Sum_probs=135.3
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEEEecCCcC-CCCCHH
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQTSWI-QSGSIR 675 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~------------iayv~Q~~~i-~~~ti~ 675 (1361)
+..++.++||++.+||.+.|.|||||||||||++|.|+++|++|+|.++|. .-|+.-+|-+ ...|+.
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 357899999999999999999999999999999999999999999999862 3455555555 467999
Q ss_pred HHhhcCCC----CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q 000671 676 DNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1361)
Q Consensus 676 eni~~g~~----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD 751 (1361)
||+.|-.+ -+.+...++++..+|.. ++.+ +...||-|||+||+|||-..+.+++.|||||+++||
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dl----------p~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLD 162 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDL----------PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHcCccc-cccc----------chhhcchhHHHHHHHHHHHcCCCCceeecCcccccC
Confidence 99998543 34577888999888863 3333 446799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccCchHHh
Q 000671 752 AHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1361)
Q Consensus 752 ~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 783 (1361)
.+....+-........+|-.||++||+.--+.
T Consensus 163 k~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 163 KEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 99988654433345567889999999875543
No 406
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.93 E-value=8.7e-26 Score=231.39 Aligned_cols=123 Identities=37% Similarity=0.603 Sum_probs=109.5
Q ss_pred ccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEecCCcCCC-CCHHHHh
Q 000671 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQS-GSIRDNI 678 (1361)
Q Consensus 613 L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~~~i~~-~ti~eni 678 (1361)
|+|+|+++++|++++|+|+||||||||+++|.|.++|++|+|.++| .++|++|++.+++ .|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999987 4999999987765 579999
Q ss_pred hcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000671 679 LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1361)
Q Consensus 679 ~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1361)
..+++++++++.+++... ..+.++.++.+||||||||++||||++++|++++||||||
T Consensus 80 -----~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLEDL-------LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGGG-------TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----cccccccccccccccccc-------cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 345678888888877652 2346778889999999999999999999999999999996
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=2.7e-24 Score=286.39 Aligned_cols=94 Identities=27% Similarity=0.477 Sum_probs=83.6
Q ss_pred ccCCCCCCChHHHHHHHHHHHHc---cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEE
Q 000671 713 IGQRGLNLSGGQKQRIQLARAVY---NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1361)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~---~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1361)
.++...+||||||||++||||++ .+|++|||||||++||++..+.+++.+.+...+|+|+|++||+++.+..+|+++
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 35778899999999999999998 699999999999999999999998776655557899999999999997799999
Q ss_pred EEe------CCeEEEecChHHHH
Q 000671 790 VLE------GGQITQSGNYQELL 806 (1361)
Q Consensus 790 ~l~------~G~i~~~g~~~~l~ 806 (1361)
+|+ +|+++..|+++++.
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHH
Confidence 996 78999988887764
No 408
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=8e-25 Score=285.74 Aligned_cols=203 Identities=22% Similarity=0.341 Sum_probs=175.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
.++..+|.+..|+.... +.+++++.|++||+.++.|+|||||||++++|.|+.+|++|++.++|
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 57889999999986543 89999999999999999999999999999999999999999999866
Q ss_pred eEEEEecCCcC-CCCCHHHHhhcC-----CCC-C-HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWI-QSGSIRDNILYG-----KPM-D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i-~~~ti~eni~~g-----~~~-~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.+|||||+.-+ ...|.||++.+- .+. | ++..++.+++.+|.+..+ .+..++|||+|+|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-----------~~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-----------KQVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-----------cchhhCCCcchhhHHH
Confidence 39999998554 577999999762 221 1 234666777777766554 3467899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|-|+..+|++++||||++|+||+.++++++.+.....+++.+|++||.+++.+. |||+.+|.+|++...|+++++..+
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999998766555566799999999999987 899999999999999999999754
No 409
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3e-25 Score=221.29 Aligned_cols=190 Identities=24% Similarity=0.368 Sum_probs=147.4
Q ss_pred cEEEEeeEEEeCC----CCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------
Q 000671 594 SVKIQEGNFSWDP----ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~----~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------- 658 (1361)
.+.++|++.++.- +-.-|+++|+||+++.||++++-||+|+||||||++|-|.|.|++|+|.+.-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 3556666655532 1234789999999999999999999999999999999999999999998742
Q ss_pred ----------eEEEEecCC-cCCCCCHHHHhh-----cCCCCC--HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 ----------SIAYVSQTS-WIQSGSIRDNIL-----YGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 ----------~iayv~Q~~-~i~~~ti~eni~-----~g~~~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.||||+|.- .++.-+..|-+. .|-+-+ .++..+.+....+-+.+=.| .+.+.
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L----------aPaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL----------APATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC----------CCccc
Confidence 499999973 455555555443 233322 23344455555555554443 35789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeC
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG 793 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1361)
|||++|||.|||+++.|-+|+||||||++||+.+.+.+.+.+.....+|..+|=+-||-+.=+. |||++.|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999887766666789999999999877665 799887743
No 410
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.91 E-value=1.7e-20 Score=215.50 Aligned_cols=443 Identities=17% Similarity=0.243 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHH---HHHHHHhHHHHHhcHHHHHHHHHHHH-HH
Q 000671 329 VVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGE---IVNYIAVDAYRMGEFPFWFHLTWSLA-LQ 404 (1361)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~---ivNlms~D~~ri~~~~~~~~~~w~~p-lq 404 (1361)
+=.++.+..-.|...+++...|+-|+.-+|++=+.-...=+-....|. .=|-++.|+..+.+....+..-..-| +.
T Consensus 168 iPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lD 247 (728)
T KOG0064|consen 168 IPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLD 247 (728)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 334555556667788999999999999999988753211000011122 23568889988877554443333334 56
Q ss_pred HHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHh
Q 000671 405 LFLAIGVLFGVV---GLGA--LPGLVLFLICGLLNVPFAKILQKCQSEF-------MIAQDERLRSTSEILNNMKIIKLQ 472 (1361)
Q Consensus 405 i~va~~~L~~~l---G~~~--l~gl~v~~l~~~l~~~~~~~~~~~q~~~-------m~~~D~R~~~~~E~L~~Ik~IK~~ 472 (1361)
++++.+-|.... |.+. ++|+++. +. ++.++.++-+. ...+..--.+=+.+++|-..|-+|
T Consensus 248 l~l~s~~L~~s~~s~g~~~~~~~~lvv~-----lT---a~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy 319 (728)
T KOG0064|consen 248 LILISFTLLDSATSVGAAGITLAGLVVY-----LT---AFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFY 319 (728)
T ss_pred HHHHHHHHHhhhccccccchhhhhhHHH-----HH---HHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhh
Confidence 666665555443 2221 2222221 11 22222222111 111112223556788888899999
Q ss_pred chHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHHHHhC-CCCCC-----HHHHHH
Q 000671 473 SWEEKFKSLIESRREKEF---KWLSEAQL----RKAYGTVIYWMSPT--IISSVIFLGCALTG-SAPLN-----ASTIFT 537 (1361)
Q Consensus 473 ~wE~~f~~~i~~~R~~El---~~l~~~~~----~~~~~~~~~~~~p~--~v~~~~f~~~~l~~-~~~Lt-----~~~~Ft 537 (1361)
+-.+.-.+++++.=+.=. ..+.+... .-.+..=-.|.+.- ++++-.+......+ ..++. -...|+
T Consensus 320 ~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~ 399 (728)
T KOG0064|consen 320 GGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFI 399 (728)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHH
Confidence 887655555544332211 11111100 00000000111100 00000000000000 00111 112232
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCC-----C----chh---------hhcccc-----CCC
Q 000671 538 V-LATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD-HELN-----N----DDV---------RRISLQ-----KSD 592 (1361)
Q Consensus 538 ~-l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~-~e~~-----~----~~~---------~~~~~~-----~~~ 592 (1361)
+ =-+.-.....+..+-.....+.|-..--.|+.+.++- +|.. . +.. +..+.+ ...
T Consensus 400 t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~ 479 (728)
T KOG0064|consen 400 TNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNF 479 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcc
Confidence 2 2233333444555555555555555556676644321 1100 0 000 000000 012
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc--CeEEEEecCCcCC
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--GSIAYVSQTSWIQ 670 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~--g~iayv~Q~~~i~ 670 (1361)
..|.++|+-.--|+. ..+...++|+|++|....|+||||||||||.+.|.|+.|...|..... .+|-|+||.|..-
T Consensus 480 ~gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms 557 (728)
T KOG0064|consen 480 NGIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMS 557 (728)
T ss_pred cceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccC
Confidence 357888887766654 347899999999999999999999999999999999999999988775 3699999999988
Q ss_pred CCCHHHHhhcCC--------CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000671 671 SGSIRDNILYGK--------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1361)
Q Consensus 671 ~~ti~eni~~g~--------~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1361)
-+|.||-|.+.. .+.++...+.++...|+.-++. ..|.+. +-+--..||||+|||+++||..|++|+.-+
T Consensus 558 ~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~da-~~dWkd~LsgGekQR~~mARm~yHrPkyal 635 (728)
T KOG0064|consen 558 GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRPKYAL 635 (728)
T ss_pred cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChhh-hccHHhhccchHHHHHHHHHHHhcCcchhh
Confidence 899999999863 3556677788888888755443 333221 223335699999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcC
Q 000671 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVD 786 (1361)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d 786 (1361)
|||.|||+-++++..||+.+. .-|-+.|-+||+++..+.-.
T Consensus 636 LDEcTsAvsidvE~~i~~~ak---~~gi~llsithrpslwk~h~ 676 (728)
T KOG0064|consen 636 LDECTSAVSIDVEGKIFQAAK---DAGISLLSITHRPSLWKYHT 676 (728)
T ss_pred hhhhhcccccchHHHHHHHHH---hcCceEEEeecCccHHHHHH
Confidence 999999999999999998653 24789999999998776433
No 411
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=1.5e-24 Score=235.64 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=121.2
Q ss_pred cceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCc---------EEEEc----------CeEEEEecCCcCCCCCH
Q 000671 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG---------TVNLY----------GSIAYVSQTSWIQSGSI 674 (1361)
Q Consensus 614 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G---------~v~~~----------g~iayv~Q~~~i~~~ti 674 (1361)
+++++++++| +++|+||||||||||+++|.|.+++..| ++... .+|+|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7789999999 9999999999999999999998866533 34332 2689999999877
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCc
Q 000671 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAV 750 (1361)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~----~~~~illLDep~sal 750 (1361)
|+.. ..++.+++++. .+ ....+..+||||||||++|||++. .+|++++||||+++|
T Consensus 89 -----~~~~-~~~~~~~~l~~----~~----------~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----PG----------KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----CC----------ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 3221 23445555554 11 112567789999999999999986 567999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEe
Q 000671 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1361)
Q Consensus 751 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1361)
|+.....+.+.+.+ ..++.|+|++||+++.+..||+++.|.
T Consensus 149 D~~~~~~l~~~l~~-~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 149 DDANVERFARLLKE-FSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred CHHHHHHHHHHHHH-hccCCEEEEEECCHHHHhhcceEEEEE
Confidence 99999998875544 345789999999999988899999985
No 412
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.90 E-value=1.5e-20 Score=227.03 Aligned_cols=402 Identities=16% Similarity=0.144 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChh------HHHHHHhcCHHHHHhhhH
Q 000671 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVG------RILTRLSSDLSILDFDIP 1010 (1361)
Q Consensus 937 ~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~G------rIlnRfs~Di~~id~~l~ 1010 (1361)
.+.+|..+..+..+....+.++......+....|=+.+.++-+.-- .||-....| ..=.|+..|+...-...-
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 3566777777777777777777777777777777777777777666 555444443 233678888876655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000671 1011 FSIVFVAASGTELLAIIGIMTF---------------VTWQVLVVAI----FAMVAVRFVQRYYIATARELIRINGTTKA 1071 (1361)
Q Consensus 1011 ~~l~~~~~~~~~~i~~i~v~~~---------------~~~~l~lv~i----p~~~~~~~~~~~y~~~sr~l~rl~~~~~s 1071 (1361)
.....++.++++++.-.+++.- +...+..+++ ...++..++.+...+-.-+-.+.|++-|.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 4444455555554444433321 1111111111 11122234445555555555666666665
Q ss_pred hHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCccCH
Q 000671 1072 PVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAP 1150 (1361)
Q Consensus 1072 pl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~ 1150 (1361)
-+. -.-+....|-.|+-|+...++..+..+.-.+.+......+.++...-...+-+.+++-.+. +-....|.++-
T Consensus 247 ~Lv----rv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~ 322 (604)
T COG4178 247 SLV----RVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITF 322 (604)
T ss_pred HHH----HHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChH
Confidence 432 2334556677888777666665555554444433333333333322222222222111111 22234789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc------CCCCCCCCCCCCCCCCCCCCcceEEEEEEEEE
Q 000671 1151 GLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH------IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224 (1361)
Q Consensus 1151 g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~------~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~ 1224 (1361)
|.+..+.+-..++...+.|++..+..+..-.++..|+.++.+ .++|.+.... .+....-..+..|+|+|++.+
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~ 401 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSLR 401 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeEE
Confidence 999999998899999999999999999999999999999863 2222211100 000000001468999999999
Q ss_pred eCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccc
Q 000671 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304 (1361)
Q Consensus 1225 Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~ 1304 (1361)
-+++. ..|++++|+|+|||.+-|.|+||||||||+++|.|+++-.+|+|.+-. -+++-++||.|++=.
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~ 469 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQ 469 (604)
T ss_pred CCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCC
Confidence 87665 589999999999999999999999999999999999999999988751 146789999999999
Q ss_pred cchhhhcC-CCCC--CCHHHHHHHHhhCcCCC-CCCcccccCCchhhhhhcccccccee
Q 000671 1305 GSVRTNLD-PLGL--YSDDEIWKVSQLTPNSR-NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1305 GTIR~NLd-P~~~--~sDeeI~~AL~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||+||=|. |... ++|+|+.++|.+|+-+. -++++.... =.--+|.||||++.
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~---W~~vLS~GEqQRla 525 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR---WDRVLSGGEQQRLA 525 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc---HhhhcChhHHHHHH
Confidence 99999984 5443 89999999999997433 223322111 33468999999875
No 413
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.89 E-value=1.3e-23 Score=243.61 Aligned_cols=200 Identities=23% Similarity=0.345 Sum_probs=168.2
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc--CeEEEEecCC--
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--GSIAYVSQTS-- 667 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~--g~iayv~Q~~-- 667 (1361)
...|.++|++|.|+.++ -+++++||-|..++.+++|||||+||||||+++.|++.|..|.|.-. ..+++-.|+-
T Consensus 387 ~pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE 464 (614)
T ss_pred CCeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh
Confidence 35789999999998764 68999999999999999999999999999999999999999999654 3577777763
Q ss_pred -cCCCCCHHHHhh--cCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000671 668 -WIQSGSIRDNIL--YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1361)
Q Consensus 668 -~i~~~ti~eni~--~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1361)
.-...+.-|+++ |......+.++.++..|+|..|.+.. ...+||+|||.||..||..+..|.+++||
T Consensus 465 ~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~----------p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV----------PMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc----------chhhcccccchhHHHHHHHhcCCcEEEec
Confidence 335678888886 33335678899999999999877643 45689999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-EecChHHHH
Q 000671 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1361)
Q Consensus 745 ep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1361)
|||++||..+...+-+ .++.. ..++|+||||..++.+ +++|.+.+||.+. ..|++....
T Consensus 535 EPtnhLDi~tid~lae-aiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 535 EPTNHLDIETIDALAE-AINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CCCcCCCchhHHHHHH-HHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999887654 33332 3489999999999988 7999999998886 677776654
No 414
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.88 E-value=1.4e-22 Score=221.51 Aligned_cols=155 Identities=21% Similarity=0.295 Sum_probs=123.6
Q ss_pred ceeEEecCCeEEEEeCCCCCCHHHHHHHH----hCCccCCCcEEEE----------cCeEEEEecCC-c----C-CCCCH
Q 000671 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAI----LGEIPKISGTVNL----------YGSIAYVSQTS-W----I-QSGSI 674 (1361)
Q Consensus 615 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~l----lg~~~~~~G~v~~----------~g~iayv~Q~~-~----i-~~~ti 674 (1361)
..++++.+| +++|+||||||||||+.+| .|..++.+|.+.. ...|++++|++ + + .+.|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 345677788 9999999999999999999 4999988875531 12699999988 2 2 23499
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH------HHHHHHHccCCCEEEEeCCCC
Q 000671 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR------IQLARAVYNDADIYLFDDPFS 748 (1361)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR------v~lARal~~~~~illLDep~s 748 (1361)
.||+.++. +++.++.+ .+.+.+||+||||| ++||||+..+|++++||||++
T Consensus 94 ~~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~ 150 (204)
T cd03240 94 LENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTT 150 (204)
T ss_pred hhceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcc
Confidence 99998752 22222222 35677999999996 789999999999999999999
Q ss_pred CcCHHHHH-HHHHHHHHHhcC-CcEEEEEccCchHHhhcCeEEEEeC
Q 000671 749 AVDAHTAA-TLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEG 793 (1361)
Q Consensus 749 alD~~~~~-~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1361)
+||+...+ .+.+.+.....+ ++|+|++||+++.+..||+++.|++
T Consensus 151 ~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 151 NLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred ccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999 887766544334 7899999999998888999999964
No 415
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.88 E-value=1.5e-22 Score=223.33 Aligned_cols=180 Identities=17% Similarity=0.224 Sum_probs=126.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEec-CCeEEEEeCCCCCCHHHHHHHHhCCc-cCCCcEEEE------------cCe
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIK-WAQKIAVCGSVGAGKSSLLYAILGEI-PKISGTVNL------------YGS 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~-~G~~~~ivG~~GsGKSTLl~~llg~~-~~~~G~v~~------------~g~ 659 (1361)
.|+++|.. +|... ++++|+.. +|++++|+||||||||||+++|.+.+ .+..+.... ...
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEE
Confidence 46777766 55422 46677654 58999999999999999999999543 333333321 125
Q ss_pred EEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHH--HHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc-
Q 000671 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAI--KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN- 736 (1361)
Q Consensus 660 iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~--~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~- 736 (1361)
|++++|++.......| +. ..+.+.+.+.+ +...+. +.+..++.+||||||||++||||++.
T Consensus 78 v~~~f~~~~~~~~~~r----~~-gl~~~~~~~~~~l~~g~l~-----------~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 78 VSFTFQLGGKKYRVER----SR-GLDYDQFTRIVLLPQGEFD-----------RFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEECCeEEEEEE----ec-CCCHHHHHHhhhhhhcchH-----------HHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 8889888743221111 11 23443333321 212222 23346778999999999999999984
Q ss_pred ---------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 737 ---------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 737 ---------~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
+|++++|||||++||+...+.+.+.+.....+++|+|++||+++.+.. +|+++++++|..
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 679999999999999999999876554443458899999999999876 699999999854
No 416
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1e-22 Score=223.87 Aligned_cols=135 Identities=47% Similarity=0.842 Sum_probs=120.3
Q ss_pred CCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHH
Q 000671 1210 WPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289 (1361)
Q Consensus 1210 wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~L 1289 (1361)
||..|.++++|++++|.....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999996533359999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1290 RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1290 R~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|++++++||+|.+|++|+++|+..+..++++++.++++ ++ .+.-.+|.||||+|.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~-----------~~----~~~~~LS~G~~qrv~ 135 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-----------VS----EGGLNLSQGQRQLLC 135 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh-----------cc----CCCCcCCHHHHHHHH
Confidence 99999999999999999999998665567777777776 12 245578999999874
No 417
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=2.3e-22 Score=226.79 Aligned_cols=176 Identities=22% Similarity=0.264 Sum_probs=115.4
Q ss_pred CcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCC----------------ccCCCcEEEEcCeEEEEecCCcCC----
Q 000671 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE----------------IPKISGTVNLYGSIAYVSQTSWIQ---- 670 (1361)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~----------------~~~~~G~v~~~g~iayv~Q~~~i~---- 670 (1361)
.++++++ |++++|+||||||||||+++|.+. ..+.+|.....+.|.+++|++.-+
T Consensus 16 ~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~ 90 (243)
T cd03272 16 TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID 90 (243)
T ss_pred cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC
Confidence 4667765 889999999999999999999843 333334211222344444443110
Q ss_pred --CCCHH-------HHhhcC-CCCCHHHHHHHHHHhcchHHHh--cCCCCCCc-------cccCCCCCCChHHHHHHHHH
Q 000671 671 --SGSIR-------DNILYG-KPMDKARYDKAIKACALDKDIN--NFDHGDLT-------EIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 671 --~~ti~-------eni~~g-~~~~~~~~~~~~~~~~l~~dl~--~l~~gd~t-------~ig~~g~~LSgGQkqRv~lA 731 (1361)
+.+++ +++.+. .....+.+...++.+++..+-. ..+.|..+ ..++++.+||||||||++||
T Consensus 91 ~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la 170 (243)
T cd03272 91 KEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALA 170 (243)
T ss_pred CCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHH
Confidence 11111 222221 1234445555555554432100 01222211 23467889999999999999
Q ss_pred HHHc----cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEe
Q 000671 732 RAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1361)
Q Consensus 732 Ral~----~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1361)
||++ .+|++++|||||++||+...+.+.+.+.+ ..+++|+|++||+.+....||++++|+
T Consensus 171 ~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~-~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 171 LIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE-LSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 9996 36899999999999999999999876544 345788999999988777799999995
No 418
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.87 E-value=7.7e-22 Score=234.07 Aligned_cols=182 Identities=27% Similarity=0.416 Sum_probs=149.1
Q ss_pred cccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------------EEEEecCC----cCCCCC
Q 000671 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------IAYVSQTS----WIQSGS 673 (1361)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--------------iayv~Q~~----~i~~~t 673 (1361)
.++|+||++.+||+++|.|-.|||+|-|+++|.|.-++.+|+|.++|+ |+|||.+- .+...+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 478999999999999999999999999999999999999999999984 99999873 467889
Q ss_pred HHHHhhcCC--------CCCHHHHHHHHHHhcchHHHhc-CCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000671 674 IRDNILYGK--------PMDKARYDKAIKACALDKDINN-FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1361)
Q Consensus 674 i~eni~~g~--------~~~~~~~~~~~~~~~l~~dl~~-l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1361)
|++||.+.. ..+..+-++..+. ...+++. .+. ......+||||.+|+|.|||.|+.+|+++|||
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~--~~~~l~Ik~~s-----~~~~v~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIKTPS-----PEQPIGTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHH--HHHhcCcccCC-----ccchhhcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 999997751 1222222222222 1122221 122 12456789999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHh-hcCeEEEEeCCeEEEec
Q 000671 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1361)
Q Consensus 745 ep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 800 (1361)
|||.|+|.-+..+||+.+.+...+|+++|++|.++.++- .||||+||++|+|+..=
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~ 483 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGEL 483 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999887777889999999999998865 59999999999998643
No 419
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.87 E-value=1e-21 Score=252.97 Aligned_cols=98 Identities=26% Similarity=0.494 Sum_probs=88.6
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEE
Q 000671 713 IGQRGLNLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1361)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~~~---~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1361)
++.+..+||||||||+.|||++.++| ++|||||||++||++..+.+.+.+.+...+|+|+|++||+++.+..||+|+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 46788999999999999999999999 999999999999999999988765554456899999999999998899999
Q ss_pred EE------eCCeEEEecChHHHHhcCc
Q 000671 790 VL------EGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 790 ~l------~~G~i~~~g~~~~l~~~~~ 810 (1361)
+| ++|+|++.|+++++.+...
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99 7999999999999986543
No 420
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=7.2e-22 Score=223.67 Aligned_cols=172 Identities=20% Similarity=0.246 Sum_probs=127.4
Q ss_pred CeEEEEeCCCCCCHHHHHHHHhCCccCCC-cEEEEc----------------CeEEEEecCCc----------CCCCCHH
Q 000671 623 AQKIAVCGSVGAGKSSLLYAILGEIPKIS-GTVNLY----------------GSIAYVSQTSW----------IQSGSIR 675 (1361)
Q Consensus 623 G~~~~ivG~~GsGKSTLl~~llg~~~~~~-G~v~~~----------------g~iayv~Q~~~----------i~~~ti~ 675 (1361)
..+++|+||||||||||+++|.+.+.+.. |++... .+|++++|++- ....||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 45999999999999999999999987653 344332 16899999852 1246888
Q ss_pred HHhhcCCC---------CCHHHHHHHHHHhcchHH-Hh-cCCCCCC-------ccccCCCCCCChHHHHHHHHHHHHc--
Q 000671 676 DNILYGKP---------MDKARYDKAIKACALDKD-IN-NFDHGDL-------TEIGQRGLNLSGGQKQRIQLARAVY-- 735 (1361)
Q Consensus 676 eni~~g~~---------~~~~~~~~~~~~~~l~~d-l~-~l~~gd~-------t~ig~~g~~LSgGQkqRv~lARal~-- 735 (1361)
+||..+.. ...+++.+.++.+++..| .. ..+.|+- .....++.+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88866432 123566677777776421 00 0111111 1234677899999999999999997
Q ss_pred --cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEe--CCe
Q 000671 736 --NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE--GGQ 795 (1361)
Q Consensus 736 --~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~--~G~ 795 (1361)
.+|+++++||||++||+...+++++.+.+ ..+|.|+|++||+.+.+..||+++-+. ||.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~-~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKT-HFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHH-HcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 58899999999999999999999876544 356889999999988888899998774 553
No 421
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=3.5e-22 Score=222.02 Aligned_cols=146 Identities=48% Similarity=0.799 Sum_probs=124.6
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
|+|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 57999999999975444699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCCC---CCcccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSRN---SRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++||+|.+|++|+++||+++...++++++++++..+-... ...++++.-....-++|.||||+|.
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~ 149 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLC 149 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHH
Confidence 99999999999999999998777778888888887642210 0123344333456689999999975
No 422
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.9e-22 Score=218.80 Aligned_cols=137 Identities=26% Similarity=0.378 Sum_probs=112.7
Q ss_pred EEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCC---hHHH
Q 000671 1216 IELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDL 1289 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~---~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~---l~~L 1289 (1361)
|+|+||+..|... ...+|+||||+|++||..||+|+||||||||++++-|+-+|++|+|.+||.||..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 356999999999999999999999999999999999999999999999998888776 6677
Q ss_pred hhcCceecCcccccc-cchhhhcC-CCC--CCCHHH----HHHHHhhCcCCCCCCcccccCCchhhhhhccccccceec
Q 000671 1290 RVKLSIIPQEPTLFR-GSVRTNLD-PLG--LYSDDE----IWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1290 R~~isiIpQdp~LF~-GTIR~NLd-P~~--~~sDee----I~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1361)
|++|++|+|++-|++ -|+.+|+. |.. ..+.+| +.+.|+.++-. -.-..--.++|.||||+|..
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~--------dk~~~yP~qLSGGQKQRVaI 152 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS--------DKADRYPAQLSGGQKQRVAI 152 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh--------hhhccCchhcCcchhhHHHH
Confidence 899999999999998 69999996 543 244444 44566666433 22233446899999999963
No 423
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.86 E-value=4e-22 Score=226.55 Aligned_cols=148 Identities=38% Similarity=0.600 Sum_probs=125.7
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhh
Q 000671 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291 (1361)
Q Consensus 1212 ~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~ 1291 (1361)
..|.|+++|++++|......+|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+..++|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46899999999999654346999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC--CCCc-ccccCCchhhhhhcccccccee
Q 000671 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR--NSRI-DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1292 ~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++++||+|.+|++|+++|+++.....+++++++++..+-.. +... ++|......+.++|.||||+|.
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~ 166 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFC 166 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHH
Confidence 999999999999999999998765455677888877653221 1111 4555556677899999999874
No 424
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.86 E-value=1.1e-22 Score=203.84 Aligned_cols=185 Identities=25% Similarity=0.389 Sum_probs=150.5
Q ss_pred cccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEEecCC-cCCCCCHHHH
Q 000671 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTS-WIQSGSIRDN 677 (1361)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~-------------iayv~Q~~-~i~~~ti~en 677 (1361)
-|-.+|.++..||+.-+||||||||||||..+.|+.+ -+|+|.+.|. -||.+|+. -.|.+-|...
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 4777899999999999999999999999999999875 6899999983 68998874 4567788888
Q ss_pred hhcCCCCC--HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc-------CCCEEEEeCCCC
Q 000671 678 ILYGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFS 748 (1361)
Q Consensus 678 i~~g~~~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~-------~~~illLDep~s 748 (1361)
+....|.. ....+++.+..++++. +|+....||||+-|||-||-.+++ ..+++++|||-+
T Consensus 93 L~L~qP~~~~a~~i~~i~~~L~l~DK-----------L~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~ 161 (248)
T COG4138 93 LTLHQPDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMN 161 (248)
T ss_pred hhhcCchHHHHHHHHHHHhhhcccch-----------hhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCc
Confidence 88876642 1233444444444333 346678899999999999988875 346999999999
Q ss_pred CcCHHHHHHHHHHHHHHhcCCcEEEEEccCch-HHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 749 AVDAHTAATLFNECVMAALEKKTVILVTHQVE-FLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 749 alD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
+||...+..+...+.....+|.|||+..||++ .+++||++..++.|++..+|..+|.+..
T Consensus 162 ~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 162 SLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred chhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 99999888776555455668999999999997 5899999999999999999999998754
No 425
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=7.5e-22 Score=222.81 Aligned_cols=174 Identities=21% Similarity=0.210 Sum_probs=126.9
Q ss_pred EEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc--------C------------eEEEEecCCc--CCCCCHH
Q 000671 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--------G------------SIAYVSQTSW--IQSGSIR 675 (1361)
Q Consensus 618 l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~--------g------------~iayv~Q~~~--i~~~ti~ 675 (1361)
+...++ +++|+||||||||||+.+|.+.+.+..|++... | .+.|..|++- +...+++
T Consensus 18 ~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~ 96 (247)
T cd03275 18 IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT 96 (247)
T ss_pred ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence 333444 999999999999999999998887666655321 1 2334444421 1222333
Q ss_pred HHhh----cCCCCCHHHHHHHHHHhcchHHHhc--CCCCCCccccCC---------CCCCChHHHHHHHHHHHHcc----
Q 000671 676 DNIL----YGKPMDKARYDKAIKACALDKDINN--FDHGDLTEIGQR---------GLNLSGGQKQRIQLARAVYN---- 736 (1361)
Q Consensus 676 eni~----~g~~~~~~~~~~~~~~~~l~~dl~~--l~~gd~t~ig~~---------g~~LSgGQkqRv~lARal~~---- 736 (1361)
+.-. -|.+.+.+.|++.++.+++..+... .+.|+-+.+.+. ..+||||||||++||||++.
T Consensus 97 ~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~ 176 (247)
T cd03275 97 GGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQ 176 (247)
T ss_pred CCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccC
Confidence 3211 1345677889999999998755332 345655555332 37899999999999999976
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEe
Q 000671 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1361)
Q Consensus 737 ~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1361)
+|++++|||||++||+.....+.+.+.....+|.|+|++||+.+.+..||++++|.
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 49999999999999999999988765554445889999999999888899999985
No 426
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=8.9e-21 Score=212.23 Aligned_cols=200 Identities=23% Similarity=0.356 Sum_probs=136.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCCCC
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGS 673 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~~t 673 (1361)
.|.++|-+.+-.. ...+.|.|+.|-.|..+++|||||-||||||+-|..---..-- +-.+-||-|+..--+.|
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp----nIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP----NIDVLLCEQEVVADSTS 336 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC----CCceEeeeeeeeecCcH
Confidence 5777777766543 3578999999999999999999999999999999753211111 11367888876555555
Q ss_pred HHHHhhcC---------------------CCCCHHHHHHHHHH---hc-------chHHHhcCCCCCCccccCCC-CCCC
Q 000671 674 IRDNILYG---------------------KPMDKARYDKAIKA---CA-------LDKDINNFDHGDLTEIGQRG-LNLS 721 (1361)
Q Consensus 674 i~eni~~g---------------------~~~~~~~~~~~~~~---~~-------l~~dl~~l~~gd~t~ig~~g-~~LS 721 (1361)
.-+.|+-. .....++.+++.+. .+ ...-+.. .|-..+.-+++ ..+|
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~kFS 414 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTTKFS 414 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCccccC
Confidence 44444321 11112333333221 11 0111222 22233333444 5799
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-Ee
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QS 799 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~ 799 (1361)
||-|.||+||||||..|-++.|||||++||.....++ ++.+.++ .||.++|+||..++.. |..|+.+++-++. +.
T Consensus 415 GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 415 GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR 491 (807)
T ss_pred CceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence 9999999999999999999999999999999988775 3444444 4799999999999987 7889999887774 45
Q ss_pred cChHHH
Q 000671 800 GNYQEL 805 (1361)
Q Consensus 800 g~~~~l 805 (1361)
|+|.-+
T Consensus 492 GNY~~F 497 (807)
T KOG0066|consen 492 GNYTLF 497 (807)
T ss_pred chHHHH
Confidence 665443
No 427
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=7.5e-22 Score=249.98 Aligned_cols=202 Identities=23% Similarity=0.324 Sum_probs=165.8
Q ss_pred EEEeeEEEeCC-CCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc--CCCcEEEEcC----------eEEE
Q 000671 596 KIQEGNFSWDP-ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYG----------SIAY 662 (1361)
Q Consensus 596 ~~~~~~f~~~~-~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~--~~~G~v~~~g----------~iay 662 (1361)
..+|..+.-+. +..+.+|+||+=-++||.++|++|+|||||||||+.|+|-.. ..+|+|.++| .+||
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GY 868 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGY 868 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccce
Confidence 33444444321 234568999999999999999999999999999999999643 4578888988 4999
Q ss_pred EecCC-cCCCCCHHHHhhcCC------CCC-H---HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 663 VSQTS-WIQSGSIRDNILYGK------PMD-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 663 v~Q~~-~i~~~ti~eni~~g~------~~~-~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
|.|+. .+...||||-+.|.. +.+ + +..++|++-.+|++--+ ..||..|..||.+||+|+.||
T Consensus 869 vqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~d-------aiVG~~G~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 869 VEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYAD-------ALVGLPGSGLSTEQRKRLTIG 941 (1391)
T ss_pred eecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhh-------hhccCCCCCCCHHHhceeeEE
Confidence 99986 567889999998852 222 2 34577888777764332 458999999999999999999
Q ss_pred HHHccCC-CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchH--HhhcCeEEEEe-CCeEEEecChHH
Q 000671 732 RAVYNDA-DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF--LSEVDRILVLE-GGQITQSGNYQE 804 (1361)
Q Consensus 732 Ral~~~~-~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~--l~~~d~i~~l~-~G~i~~~g~~~~ 804 (1361)
--|..|| .|++|||||||||+.++..|.+.+.+....|+||+.+-|+++. .+..|+++.|+ +|+.++.|+..+
T Consensus 942 VELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 942 VELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999 8999999999999999999998877777899999999999974 56789999995 689999998655
No 428
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.85 E-value=6.4e-22 Score=210.60 Aligned_cols=137 Identities=28% Similarity=0.352 Sum_probs=112.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||+++++.|++||++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccccccc-chhhhcC--CC-CCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhccccccceec
Q 000671 1296 IPQEPTLFRG-SVRTNLD--PL-GLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1296 IpQdp~LF~G-TIR~NLd--P~-~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1361)
|-|..-||.- ||.+||. |- ...+ ++.+.+-|++++-.-+... -----.+|.||+|+|-|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~------~RyP~eLSGGQQQRVGv 146 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYA------DRYPHELSGGQQQRVGV 146 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHh------hcCchhcCcchhhHHHH
Confidence 9999999987 9999995 32 1234 3445555665532211111 11123589999999965
No 429
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=1.2e-21 Score=205.03 Aligned_cols=136 Identities=29% Similarity=0.375 Sum_probs=108.4
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCC-CCChHHHhhcC
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC-SMGLKDLRVKL 1293 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~-~i~l~~LR~~i 1293 (1361)
-|+++||+.+|... .||||||++|++||.|.|+||||||||||+++|.++-+|++|+|.|||.++. +.++..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999743 4999999999999999999999999999999999999999999999998874 34899999999
Q ss_pred ceecCccccccc-chhhhcC--CC---CCCCHHHHHHH---HhhCcCCCCCCcccccCCchhhhhhccccccceec
Q 000671 1294 SIIPQEPTLFRG-SVRTNLD--PL---GLYSDDEIWKV---SQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1294 siIpQdp~LF~G-TIR~NLd--P~---~~~sDeeI~~A---L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1361)
|+|+|..-||.- |+-+|+. |- +...+|.-..| |++++-.. .--..-..+|.||||+|..
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~--------ka~~yP~qLSGGQqQRVAI 147 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD--------KADAYPAQLSGGQQQRVAI 147 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh--------hhhhCccccCcHHHHHHHH
Confidence 999999999987 9999984 31 22233333344 44443222 1122234689999999853
No 430
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=8.8e-21 Score=244.04 Aligned_cols=93 Identities=29% Similarity=0.532 Sum_probs=84.5
Q ss_pred ccCCCCCCChHHHHHHHHHHHHcc---CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEE
Q 000671 713 IGQRGLNLSGGQKQRIQLARAVYN---DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1361)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~---~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1361)
++++..+||||||||+.|||++.. +|++|+|||||++||+...+.+.+.+.....+|+|+|++||+++.+..||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 467889999999999999999997 59999999999999999999998776555556899999999999998899999
Q ss_pred EE------eCCeEEEecChHHH
Q 000671 790 VL------EGGQITQSGNYQEL 805 (1361)
Q Consensus 790 ~l------~~G~i~~~g~~~~l 805 (1361)
+| ++|+|++.|+++++
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EecCCccCCCCEEEEeCCHHHh
Confidence 99 79999999998875
No 431
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3.1e-21 Score=204.54 Aligned_cols=136 Identities=29% Similarity=0.441 Sum_probs=115.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCC---hHHHhh
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRV 1291 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~---l~~LR~ 1291 (1361)
.|+++||+.+|+. ...+|+||||+|++||.|||+|+||||||||+++|-|+.+|++|+|.++|.+|.++. ++++|.
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 5899999999964 456999999999999999999999999999999999999999999999999999998 788899
Q ss_pred cCceecCccccccc-chhhhcC------------CCCCCCHHH---HHHHHhhCcCCCCCCcccccCCchhhhhhccccc
Q 000671 1292 KLSIIPQEPTLFRG-SVRTNLD------------PLGLYSDDE---IWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTK 1355 (1361)
Q Consensus 1292 ~isiIpQdp~LF~G-TIR~NLd------------P~~~~sDee---I~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1355 (1361)
++|+|.|+|-|-.. |+-+|+- -|+-++.+| ..+||+++ |+-...+-.--.+|.||+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv--------gi~~~A~qra~~LSGGQQ 153 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV--------GILDKAYQRASTLSGGQQ 153 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc--------CcHHHHHHHhccCCcchh
Confidence 99999999999876 8999973 134566555 45566655 344455666678999999
Q ss_pred ccee
Q 000671 1356 QLVT 1359 (1361)
Q Consensus 1356 ~~~~ 1359 (1361)
|+|.
T Consensus 154 QRVa 157 (258)
T COG3638 154 QRVA 157 (258)
T ss_pred HHHH
Confidence 9985
No 432
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.84 E-value=3.4e-18 Score=193.42 Aligned_cols=259 Identities=15% Similarity=0.255 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcC---CCCc--hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000671 909 QSGFVGLQAAATYWLAYAIQI---PKIT--SGILI--GVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKA 981 (1361)
Q Consensus 909 ~~~~~~~~~~~~~wl~~~~~~---~~~~--~~~~l--~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~a 981 (1361)
.++..+.....+++++.+.+. .+.. ...+. ..++++.++...+.....+...+.+.+..+++++++++++++.
T Consensus 8 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (275)
T PF00664_consen 8 SILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRL 87 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455566666665542 1111 11111 1222333344444555555677889999999999999999999
Q ss_pred CCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 982 PMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARE 1061 (1361)
Q Consensus 982 p~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~ 1061 (1361)
|.+||+++++|+++||+++|++.+++.+...+..++..+..+++.+++++..+|+++++.+...+++.++..++.+..++
T Consensus 88 ~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~ 167 (275)
T PF00664_consen 88 PYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSKKIRK 167 (275)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998888888999999999999
Q ss_pred HHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Q 000671 1062 LIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-L 1140 (1361)
Q Consensus 1062 l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~ 1140 (1361)
..+...+..++..+++.|.++|+++||+|+.|+++.+++.+..++..+........+.|.....+++..+..+.+..+ +
T Consensus 168 ~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 247 (275)
T PF00664_consen 168 LSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFGA 247 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998899999888888877754444433 4
Q ss_pred hh-hcCCccCHHHHHHHHHHHHHHHHHH
Q 000671 1141 VL-IPRGYVAPGLVGLSLSYAFTLTGTQ 1167 (1361)
Q Consensus 1141 vl-~~~g~is~g~~gl~l~ya~~l~~~l 1167 (1361)
.+ ...|.+++|.+..+++|...+.+|+
T Consensus 248 ~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 248 YLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 55 6789999999999999998888774
No 433
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.84 E-value=3.3e-21 Score=197.13 Aligned_cols=135 Identities=22% Similarity=0.313 Sum_probs=113.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChH---HHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~---~LR~~ 1292 (1361)
|+|+||+.+|..+ +++|+||||+|++||.+=++|+|||||||++++|+|...|++|+|.++|.|++++.-+ -||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999876 6799999999999999999999999999999999999999999999999999998755 57999
Q ss_pred CceecCccccccc-chhhhcC-CCC--CCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLFRG-SVRTNLD-PLG--LYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF~G-TIR~NLd-P~~--~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||+|.||--|... |+.||+. |.. ..+ .+++-++|+.++-.-..+--+ -.+|.|++|+|.
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP--------~~LSGGEQQRva 147 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP--------SQLSGGEQQRVA 147 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc--------cccCchHHHHHH
Confidence 9999999988766 9999996 432 123 345678999987554443322 247788999885
No 434
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.4e-20 Score=208.86 Aligned_cols=199 Identities=22% Similarity=0.394 Sum_probs=154.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCc--
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-- 668 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~-- 668 (1361)
..+-+.|++|.|+.. .|.+++++|-|.--..+|||||||.||||||++|+|.++|.+|+..-+- +||+..|+..
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~ 662 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEA 662 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHh
Confidence 456788999999864 5899999999999999999999999999999999999999999986554 6999999753
Q ss_pred C-CCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 000671 669 I-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747 (1361)
Q Consensus 669 i-~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~ 747 (1361)
+ ...|--|.+.-+-..+.+..++.+-..+|..-.. | -+...||||||.||+||--.++.|||+||||||
T Consensus 663 L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAH-------T---ikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 663 LNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAH-------T---IKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred hccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccc-------e---EeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 2 3447777775443444444556666666653322 2 245689999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcC-eEEEEeCCeEEE-ecChHHHH
Q 000671 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVD-RILVLEGGQITQ-SGNYQELL 806 (1361)
Q Consensus 748 salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d-~i~~l~~G~i~~-~g~~~~l~ 806 (1361)
++||..+...+-+. ++.. +..||+||||-..+...| ..+|+++-.|-+ .|++++..
T Consensus 733 NNLDIESIDALaEA-Iney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYk 790 (807)
T KOG0066|consen 733 NNLDIESIDALAEA-INEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYK 790 (807)
T ss_pred CCcchhhHHHHHHH-HHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHHHH
Confidence 99999998876543 3332 347999999999887653 567777766643 45655543
No 435
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.2e-20 Score=214.48 Aligned_cols=197 Identities=24% Similarity=0.399 Sum_probs=160.8
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCC--
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~-- 667 (1361)
...+++.+++|.|++++. +.+.++++++..-+..+++|+||+||||+++++.|+..|..|.+.+.+ +|+|-.|..
T Consensus 360 ~p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVD 438 (582)
T ss_pred CCeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhh
Confidence 356899999999987643 799999999999999999999999999999999999999999998877 699999974
Q ss_pred cCC-CCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 668 WIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 668 ~i~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
|+. +.+.-|-..-..| ..++.|++.+...+|..++..- ....||||||-||++|.+...+|.+|+|||
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~----------si~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQ----------SIASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhc----------cccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 321 2222232221111 2678999999999999888742 246799999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEE-ecCh
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNY 802 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~-~g~~ 802 (1361)
||+.||..+-..+-+.+ +. . +-.||+||||.++++. |+.+++.+||++.. .|..
T Consensus 509 PTNhLD~dsl~AL~~Al-~~-F-~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKAL-KN-F-NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred CCccccHHHHHHHHHHH-Hh-c-CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 99999999987764432 21 2 3479999999999987 89999999999974 4443
No 436
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=2.3e-21 Score=213.09 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=122.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCC-CCC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-SGS 673 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~-~~t 673 (1361)
++++|.- +|. ...+++++++ ++++|+|||||||||++++|.-.+-...... ..++++|++|+.... +.|
T Consensus 6 l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~-~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM-RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh-hhhhHHHHhcCCCCCCCCc
Confidence 4555543 443 2357888887 7999999999999999999972111100011 124689999987653 457
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHh-------------cchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc----
Q 000671 674 IRDNILYGKPMDKARYDKAIKAC-------------ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN---- 736 (1361)
Q Consensus 674 i~eni~~g~~~~~~~~~~~~~~~-------------~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~---- 736 (1361)
++++..+-...... ..++.. +-..++..++++.+ .+...||+|||||++||||++.
T Consensus 76 ~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~----~~~~~lS~G~~~r~~la~al~~~~~~ 148 (212)
T cd03274 76 SCSVEVHFQEIIDK---PLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSW----KNISNLSGGEKTLSSLALVFALHHYK 148 (212)
T ss_pred eEEEEEEEEeCCCH---HHHHHCCcCCCCCceEEcCCcEEEeeccccccc----cchhhcCHHHHHHHHHHHHHHhcccC
Confidence 77776654322100 011000 00012223344333 3456899999999999999974
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeC
Q 000671 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1361)
Q Consensus 737 ~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1361)
+|++++|||||++||++..+.+.+.+.. ..++.|+|++||+.+....||++++|..
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~-~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKE-RTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHH-HcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 5899999999999999999998765544 4567899999999877778999999953
No 437
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.3e-20 Score=206.06 Aligned_cols=137 Identities=31% Similarity=0.464 Sum_probs=117.5
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCC-CCChHHHhhcC
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC-SMGLKDLRVKL 1293 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~-~i~l~~LR~~i 1293 (1361)
.|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.|++ +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999877 67999999999999999999999999999999999999999999999999999 59999999999
Q ss_pred ceecCcc--cccccchhhhcC--CCC-CCCHHH----HHHHHhhCcCCCCCCcccccCCchhhhhhccccccceec
Q 000671 1294 SIIPQEP--TLFRGSVRTNLD--PLG-LYSDDE----IWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1294 siIpQdp--~LF~GTIR~NLd--P~~-~~sDee----I~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1361)
++|.|+| .+|..||.+.+. |.+ ..+.+| +.+||+.++-..- .|-+++ ++|.||||+|.+
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~----~~r~p~----~LSGGqkqRvaI 149 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL----LDRPPF----NLSGGQKQRVAI 149 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh----ccCCcc----ccCCcceeeHHh
Confidence 9999999 899999999996 222 244444 6677777754432 455554 689999999864
No 438
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.82 E-value=1.5e-20 Score=207.47 Aligned_cols=135 Identities=29% Similarity=0.426 Sum_probs=109.9
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
.++.+|++|+|. ..++|+|+||+|++||.++|+||+|||||||+++|.|+..|.+|+|++||.||.+++.+++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999997 345999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccc-cccchhhhcC----C----CCCCC--HH-HHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEPTL-FRGSVRTNLD----P----LGLYS--DD-EIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp~L-F~GTIR~NLd----P----~~~~s--De-eI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+|||++.. |.=|++|=+- | |...+ |+ .+.+||+.++-. ..-....-.+|.||||+|-
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~--------~la~r~~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE--------HLADRPVDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH--------HHhcCcccccChhHHHHHH
Confidence 99999754 5558888662 3 22223 33 477788887422 1222223467889999984
No 439
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.82 E-value=1.9e-20 Score=210.51 Aligned_cols=144 Identities=27% Similarity=0.428 Sum_probs=115.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999996544569999999999999999999999999999999999999999999999999999888899999999
Q ss_pred ecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|.+|+.|+++||.... ..+.+++.++++..+-.. .-..+++..--.+.-++|.||||+|.
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~ 148 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIA 148 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHH
Confidence 99999999999999997432 245566666665442110 00112222222344579999999985
No 440
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=6e-20 Score=199.79 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=114.7
Q ss_pred cccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCC-----cE----EEE----cCeEEEEecCCcCCCCCHHHHh
Q 000671 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GT----VNL----YGSIAYVSQTSWIQSGSIRDNI 678 (1361)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~-----G~----v~~----~g~iayv~Q~~~i~~~ti~eni 678 (1361)
.++++++++.+| +++|+||||||||||+.+|...+.... |. +.- .+.|.+.+|+.-+.. |-
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~~ 84 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----NP 84 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----Cc
Confidence 356788888887 889999999999999999874322111 21 000 124777777654333 20
Q ss_pred hcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCcCHHH
Q 000671 679 LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHT 754 (1361)
Q Consensus 679 ~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal----~~~~~illLDep~salD~~~ 754 (1361)
......++.+++++. .+ ...++..+||||||||++||||+ +.+|++++||||+++||+..
T Consensus 85 --~~~~~~~~~~~~l~~------------~~--~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~ 148 (198)
T cd03276 85 --LCVLSQDMARSFLTS------------NK--AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN 148 (198)
T ss_pred --CCHHHHHHHHHHhcc------------cc--ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence 000112333333332 11 12367789999999999999999 69999999999999999999
Q ss_pred HHHHHHHHHHHhcC---CcEEEEEccCchHHhhcCeEEEEeCCe
Q 000671 755 AATLFNECVMAALE---KKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1361)
Q Consensus 755 ~~~i~~~~~~~~~~---~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1361)
...+.+.+.+...+ ++|+|++||+++.+...|+|-+|..|+
T Consensus 149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99988766554332 358999999999998899999998754
No 441
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.82 E-value=2.3e-20 Score=199.29 Aligned_cols=96 Identities=30% Similarity=0.644 Sum_probs=91.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57999999996543459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccccchhhhc
Q 000671 1296 IPQEPTLFRGSVRTNL 1311 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NL 1311 (1361)
+||+|.+|++|+++|+
T Consensus 81 ~~q~~~~~~~tv~~~l 96 (173)
T cd03246 81 LPQDDELFSGSIAENI 96 (173)
T ss_pred ECCCCccccCcHHHHC
Confidence 9999999999999998
No 442
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=9.1e-20 Score=207.20 Aligned_cols=181 Identities=22% Similarity=0.340 Sum_probs=139.5
Q ss_pred eeEEEeCCCCCCCcccceeEEecC-----CeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCC-cCCCC
Q 000671 599 EGNFSWDPELAIPTLRGVNLDIKW-----AQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS-WIQSG 672 (1361)
Q Consensus 599 ~~~f~~~~~~~~~~L~~i~l~i~~-----G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~-~i~~~ 672 (1361)
+.-++|+.- ...+.+..|++.+ ||+++++||||-||||+.+.|+|.++|++|. ..+-+|+|=||-- --+++
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~g 416 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDG 416 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCC
Confidence 444566542 2356677776655 6789999999999999999999999999998 5555899999973 34899
Q ss_pred CHHHHhhcCCC--CCHHHH-HHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000671 673 SIRDNILYGKP--MDKARY-DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1361)
Q Consensus 673 ti~eni~~g~~--~~~~~~-~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~sa 749 (1361)
||++-+.-..+ +...+| .++++-..|++-++ .+..+||||+.|||++|.||.+++|+||||||.+.
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-----------~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHHHHh-----------cccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 99998754322 333343 35556666665554 45678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeC
Q 000671 750 VDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEG 793 (1361)
Q Consensus 750 lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1361)
||.+.+-.+-+.+.+-. ..++|.++|-||+-.+.. +||++|.+.
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99987765443332322 357899999999999987 699999863
No 443
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.82 E-value=2e-20 Score=208.68 Aligned_cols=148 Identities=29% Similarity=0.393 Sum_probs=115.3
Q ss_pred CcceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHh
Q 000671 1212 FKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290 (1361)
Q Consensus 1212 ~~G~I~f~nVs~~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR 1290 (1361)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999642 23599999999999999999999999999999999999999999999999999988888889
Q ss_pred hcCceecCcccccccchhhhcCC-CCCCCHHHHHHHHhhCcCC-CCCCc--ccccCCchhhhhhcccccccee
Q 000671 1291 VKLSIIPQEPTLFRGSVRTNLDP-LGLYSDDEIWKVSQLTPNS-RNSRI--DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1291 ~~isiIpQdp~LF~GTIR~NLdP-~~~~sDeeI~~AL~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++++||+|.+|++|+++|++. ....+.+++++..+...-. .-... +++..--.....+|.||||+|.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 99999999999999999999973 2223344444433222100 00001 2333334446789999999975
No 444
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.82 E-value=2.1e-20 Score=207.04 Aligned_cols=136 Identities=19% Similarity=0.288 Sum_probs=109.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChH---HHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~---~LR~~ 1292 (1361)
|+++|++++|+.+..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964433599999999999999999999999999999999999999999999999999877644 47889
Q ss_pred CceecCccccccc-chhhhcCCC----CC---CCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLFRG-SVRTNLDPL----GL---YSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF~G-TIR~NLdP~----~~---~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++||+|.+|.. |+++|+... +. ..++++.++++..+-. .. .|..+ -.+|.||||+|.
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~~~----~~LSgG~~qrv~ 148 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE--GK--AHALP----MQLSGGEQQRVA 148 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hh--hhCCh----hhCCHHHHHHHH
Confidence 9999999999875 999999621 11 1245678888887532 11 12222 379999999975
No 445
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.81 E-value=3.1e-20 Score=212.53 Aligned_cols=134 Identities=25% Similarity=0.371 Sum_probs=110.0
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
.|+++||+.+|.+.. ||+|+|++|+.||.+++||||||||||+++++.|+.+|++|+|.|||.|++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 699999999997533 999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred eecCccccccc-chhhhcC-CCC--CCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhccccccceec
Q 000671 1295 IIPQEPTLFRG-SVRTNLD-PLG--LYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1295 iIpQdp~LF~G-TIR~NLd-P~~--~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1361)
+|+|+.-||.. ||++||. |.. ..+ |+++.++++..+ | +-.--.+--.+|.||||+|.+
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~------l--~~lL~r~P~~LSGGQrQRVAl 144 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLG------L--EHLLNRKPLQLSGGQRQRVAL 144 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcC------C--hhHHhcCcccCChhhHHHHHH
Confidence 99999999998 9999996 221 122 445556666552 1 111111234689999999863
No 446
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.1e-20 Score=208.91 Aligned_cols=145 Identities=30% Similarity=0.456 Sum_probs=116.0
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
|+|+++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+.+|.+|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 579999999999633 3499999999999999999999999999999999999999999999999999998888999999
Q ss_pred ceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC-CCCc--ccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR-NSRI--DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++||+|.+|++|+++|+..+. ...++++.++++..+-.. -... +++..-....-.+|.||||+|.
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~ 149 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLA 149 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHH
Confidence 9999999999999999997432 345667777766553211 0000 1222222234478999999975
No 447
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.3e-20 Score=219.75 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=109.2
Q ss_pred ceEEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCC------
Q 000671 1214 GRIELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM------ 1284 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~---~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i------ 1284 (1361)
..|+++||+++|+.. ..++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|++||+|+.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 369999999999642 23599999999999999999999999999999999999999999999999999763
Q ss_pred ----------ChHHHhhcCceecCcc--cccccchhhhcCCC--C-CCCHHHH----HHHHhhCcCCCCCCcccccCCch
Q 000671 1285 ----------GLKDLRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYSDDEI----WKVSQLTPNSRNSRIDIDFPTFN 1345 (1361)
Q Consensus 1285 ----------~l~~LR~~isiIpQdp--~LF~GTIR~NLdP~--~-~~sDeeI----~~AL~~~~~~~~~~~~~~~~~~~ 1345 (1361)
+...+|+++++|||+| .+|++|+++||... . ..++++. .++++..+-. . ..-..
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~------~-~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD------D-SYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC------h-hHhcC
Confidence 4568899999999999 79999999999521 1 1233333 3344444211 0 11123
Q ss_pred hhhhhccccccceec
Q 000671 1346 KFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1346 ~~~~~~~~~~~~~~~ 1360 (1361)
.+-++|.||||+|.+
T Consensus 173 ~~~~LSgGqkqRvai 187 (320)
T PRK13631 173 SPFGLSGGQKRRVAI 187 (320)
T ss_pred CcccCCHHHHHHHHH
Confidence 345799999999853
No 448
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=7.6e-20 Score=195.35 Aligned_cols=154 Identities=22% Similarity=0.218 Sum_probs=106.1
Q ss_pred cceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeE--EEEecCCcCCCCCHHHHhhcCCCCCHHHHHH
Q 000671 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI--AYVSQTSWIQSGSIRDNILYGKPMDKARYDK 691 (1361)
Q Consensus 614 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~i--ayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~ 691 (1361)
++..+...++.+.+|+||||||||++|.+|.=.+--.+-........ .+-...++-..++|+ +.|
T Consensus 13 ~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~f----------- 79 (178)
T cd03239 13 RDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVE--ITF----------- 79 (178)
T ss_pred CCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEE--EEE-----------
Confidence 34444444444999999999999999999853221100000000000 010111111111111 111
Q ss_pred HHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc
Q 000671 692 AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767 (1361)
Q Consensus 692 ~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~----~~~~illLDep~salD~~~~~~i~~~~~~~~~ 767 (1361)
...+..+|.||.|++ ||||||||++|||++. .+|+++++|||+++||+...+.+.+.+.....
T Consensus 80 -------~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~ 146 (178)
T cd03239 80 -------DKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK 146 (178)
T ss_pred -------ECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 223678899999987 9999999999999984 79999999999999999999998876554444
Q ss_pred CCcEEEEEccCchHHhhcCeEEEEeC
Q 000671 768 EKKTVILVTHQVEFLSEVDRILVLEG 793 (1361)
Q Consensus 768 ~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1361)
+|+|+|++||+.+.+..+|+++.+++
T Consensus 147 ~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 147 HTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 57899999999999888999999965
No 449
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.4e-20 Score=208.24 Aligned_cols=143 Identities=31% Similarity=0.461 Sum_probs=118.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++|++++|+.+. .+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++.+...+|+.+++
T Consensus 1 l~~~~l~~~~~~~~-~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGR-PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCC-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996433 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCcCCCC-CCc--ccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTPNSRN-SRI--DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|.+|++|+++|+... ...+++++.++++.++-... ... +++..-....-.+|.||||+|.
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~ 147 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVA 147 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 9999999999999999632 23567777777776542110 111 3444444456689999999975
No 450
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5.1e-20 Score=206.36 Aligned_cols=137 Identities=23% Similarity=0.312 Sum_probs=110.6
Q ss_pred eEEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHH---H
Q 000671 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~---L 1289 (1361)
-++++||+++|+.+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|++||.|+.+++.+. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 35999999999999999999999999999999999999999999999999999988754 3
Q ss_pred h-hcCceecCccccccc-chhhhcCC---CCCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1290 R-VKLSIIPQEPTLFRG-SVRTNLDP---LGLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1290 R-~~isiIpQdp~LF~G-TIR~NLdP---~~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
| ++++++||+|.+|.+ |+++|+.. +.... ++++.++++..+- +..--.+...+|.||||+|.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl--------~~~~~~~~~~LSgG~~qrl~ 155 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL--------EHRANHRPSELSGGERQRVA 155 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--------chhhhCChhhCCHHHHHHHH
Confidence 3 679999999999986 99999852 11222 3456777777632 21122344679999999975
No 451
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.3e-20 Score=207.25 Aligned_cols=136 Identities=30% Similarity=0.434 Sum_probs=112.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
.++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+..++|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 5899999999953 35999999999999999999999999999999999999999999999999999988889999999
Q ss_pred eecCcccccccchhhhcCCC---CCCCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEPTLFRGSVRTNLDPL---GLYSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp~LF~GTIR~NLdP~---~~~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+|.+|++|+++|+... ....++++.+.++..+-.. .. .+ .+.-.+|.||||+|.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~--~~----~~~~~LS~G~~qrl~ 141 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK-EY--AT----RDVKNLSGGEAQRVS 141 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH-HH--hh----CCcccCCHHHHHHHH
Confidence 99999999999999999632 1123456777777764310 00 11 234579999999975
No 452
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.4e-20 Score=212.17 Aligned_cols=137 Identities=21% Similarity=0.310 Sum_probs=112.5
Q ss_pred eEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1215 RIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999998999999999
Q ss_pred ceecCcc--cccccchhhhcCCCC---CCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp--~LF~GTIR~NLdP~~---~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++|||+| .++..|+++||.... ..+ ++++.++++..+-. .. .|.. ...+|.||||+|.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~--~~~~----~~~LSgGq~qrv~ 150 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ--DF--KERE----PARLSGGQKQRVA 150 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH--hH--hhCC----cccCCHHHHHHHH
Confidence 9999998 366779999996210 123 34577888887432 11 1222 2579999999975
No 453
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.81 E-value=6.2e-20 Score=203.88 Aligned_cols=146 Identities=32% Similarity=0.509 Sum_probs=117.0
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
|+|+++|++++|.....++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+++...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 57999999999964334599999999999999999999999999999999999999999999999999988888889999
Q ss_pred ceecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCcCC--CCCCc-ccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTPNS--RNSRI-DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++||+|.+|..|+++|+... ...+++++.++++..+-. .+... ++|+......-.+|.||||+|.
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~ 150 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVA 150 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHH
Confidence 999999999999999999632 224556677777765321 11111 2333322334479999999975
No 454
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.80 E-value=3.4e-20 Score=198.91 Aligned_cols=95 Identities=32% Similarity=0.612 Sum_probs=88.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++|++++|+...+++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+. ...+|+++++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 579999999965434599999999999999999999999999999999999999999999999999877 6788999999
Q ss_pred ecCcccccccchhhhc
Q 000671 1296 IPQEPTLFRGSVRTNL 1311 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NL 1311 (1361)
+||+|.+|++|+++|+
T Consensus 80 ~~q~~~~~~~tv~~~i 95 (178)
T cd03247 80 LNQRPYLFDTTLRNNL 95 (178)
T ss_pred EccCCeeecccHHHhh
Confidence 9999999999999998
No 455
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.80 E-value=5.7e-20 Score=203.89 Aligned_cols=135 Identities=23% Similarity=0.331 Sum_probs=110.0
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
|+++||+++|.... +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999996431 159999999999999999999999999999999999999999999999999986 456789999
Q ss_pred ceecCccccccc-chhhhcCC---CCCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEPTLFRG-SVRTNLDP---LGLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp~LF~G-TIR~NLdP---~~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++||+|.+|.+ |+++|+.. ....+ ++++.++++..+ ++...-.....+|.||||+|.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~--------l~~~~~~~~~~LS~G~~qrv~ 146 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG--------MEELLDRRVGGFSTGMRQKVA 146 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC--------CHHHHhhhhhhcCHHHHHHHH
Confidence 999999999996 99999841 11122 345677777763 222223466789999999975
No 456
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.80 E-value=5.6e-20 Score=215.39 Aligned_cols=136 Identities=24% Similarity=0.352 Sum_probs=110.7
Q ss_pred EEEEEEEEEeCCC--CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHH---Hh
Q 000671 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~--~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~---LR 1290 (1361)
|+++||+++|+.+ ..++|+||||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.||.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 235999999999999999999999999999999999999999999999999999987655 58
Q ss_pred hcCceecCcccccc-cchhhhcC-CCC--CCCH----HHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1291 VKLSIIPQEPTLFR-GSVRTNLD-PLG--LYSD----DEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1291 ~~isiIpQdp~LF~-GTIR~NLd-P~~--~~sD----eeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++|++|||++.+|. .|+++|+. |.. ..+. +++.++|+.++-.. . .| .....+|.||||+|.
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~--~--~~----~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD--K--HD----SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch--h--hh----CChhhCCHHHHHHHH
Confidence 89999999999996 69999995 221 1232 34667788774321 1 22 234579999999985
No 457
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.7e-20 Score=192.78 Aligned_cols=138 Identities=23% Similarity=0.346 Sum_probs=112.9
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCC-----cEEEEcCeeCCC--CCh
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG-----GSILIDGVDICS--MGL 1286 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~-----G~I~IDGvDI~~--i~l 1286 (1361)
..++++|+++-|.. ..+|+|||++|++++.+|++|||||||||++++|-|+.|..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 36899999999964 359999999999999999999999999999999999999976 999999999987 579
Q ss_pred HHHhhcCceecCcccccccchhhhcCCC----CCC---CHHHHHHHHhhCc--CCCCCCcccccCCchhhhhhccccccc
Q 000671 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLY---SDDEIWKVSQLTP--NSRNSRIDIDFPTFNKFCCRIIKTKQL 1357 (1361)
Q Consensus 1287 ~~LR~~isiIpQdp~LF~GTIR~NLdP~----~~~---sDeeI~~AL~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1357 (1361)
-.||+++|+|.|.|.-|..||+||+... +.. -||-+.++|+.|. ++-.++++ .+ +-.+|.||+|+
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~--~s----a~~LSGGQQQR 157 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH--KS----ALGLSGGQQQR 157 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh--CC----ccCCChhHHHH
Confidence 9999999999999999999999999621 111 2455667777774 33344431 11 23489999998
Q ss_pred ee
Q 000671 1358 VT 1359 (1361)
Q Consensus 1358 ~~ 1359 (1361)
+.
T Consensus 158 Lc 159 (253)
T COG1117 158 LC 159 (253)
T ss_pred HH
Confidence 64
No 458
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=5.9e-20 Score=201.56 Aligned_cols=131 Identities=24% Similarity=0.270 Sum_probs=106.3
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhc
Q 000671 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~ 1292 (1361)
|+++||+++|.+.. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3599999999999999999999999999999999999999999999999 6
Q ss_pred CceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++||+|.+|++|+++|+......++++.+++++.++-.. ....++++......-.+|.||||+|.
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~ 137 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRIS 137 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHH
Confidence 99999999999999999998654566677778777654221 11113333333445578999999975
No 459
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5.6e-20 Score=212.08 Aligned_cols=138 Identities=19% Similarity=0.293 Sum_probs=109.1
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCC----ChH
Q 000671 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLK 1287 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i----~l~ 1287 (1361)
.|+++||+++|+++. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 3599999999999999999999999999999999999999999999999999764 356
Q ss_pred HHhhcCceecCcc--cccccchhhhcCC--CC-CCCHH----HHHHHHhhCcCCCCCCccccc-CCchhhhhhccccccc
Q 000671 1288 DLRVKLSIIPQEP--TLFRGSVRTNLDP--LG-LYSDD----EIWKVSQLTPNSRNSRIDIDF-PTFNKFCCRIIKTKQL 1357 (1361)
Q Consensus 1288 ~LR~~isiIpQdp--~LF~GTIR~NLdP--~~-~~sDe----eI~~AL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 1357 (1361)
.+|++|++|||+| .+|++|+++||.. .. ..+.+ ++.++++..+ ++. ..-.....+|.||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~g--------L~~~~~~~~~~~LSgGq~qr 153 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLG--------FSRDVMSQSPFQMSGGQMRK 153 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcC--------CChhhhhCCcccCCHHHHHH
Confidence 7899999999998 6899999999952 11 12333 3445555542 221 1123456899999999
Q ss_pred eec
Q 000671 1358 VTV 1360 (1361)
Q Consensus 1358 ~~~ 1360 (1361)
|.+
T Consensus 154 v~l 156 (286)
T PRK13646 154 IAI 156 (286)
T ss_pred HHH
Confidence 853
No 460
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.80 E-value=5.3e-19 Score=181.86 Aligned_cols=200 Identities=23% Similarity=0.364 Sum_probs=157.1
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-----------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~----------- 659 (1361)
++.+|++.+..|+|+.. .|++-|+|+++|.|....+||.|||||||||++|.|-.-...|.|.+.|+
T Consensus 10 ~~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred ccceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccccc
Confidence 46789999999999865 38999999999999999999999999999999999987777788888663
Q ss_pred --EEEEecC----------CcCC-CCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 660 --IAYVSQT----------SWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 660 --iayv~Q~----------~~i~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
..|..-+ --+| +.++ +...||-. .+.+|-++.++...+ |+ .-+.+.+|-|||
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~g~dp~Rre~LI~iLDI--dl-----------~WRmHkvSDGqr 153 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVGGDDPERREKLIDILDI--DL-----------RWRMHKVSDGQR 153 (291)
T ss_pred CceeEecccccccccccccccccccccH-HHHHhhccCCChhHhhhhhhheec--cc-----------eEEEeeccccch
Confidence 3443321 1122 2233 44456544 345666666654322 22 246678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
+||.|+..|++.=+++||||.|-.||.-.+..+.+.+.... .+|.|+|.+||-.+=+.. ..+++.|++|+++..-+|+
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 99999999999999999999999999999999887666554 368999999999988876 8999999999999866666
Q ss_pred HHH
Q 000671 804 ELL 806 (1361)
Q Consensus 804 ~l~ 806 (1361)
++.
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 554
No 461
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6e-20 Score=211.82 Aligned_cols=138 Identities=28% Similarity=0.412 Sum_probs=110.7
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCC--hHHHh
Q 000671 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--LKDLR 1290 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~--l~~LR 1290 (1361)
|+++||+++|++.. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+++.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999996432 35999999999999999999999999999999999999999999999999998754 46889
Q ss_pred hcCceecCcc--cccccchhhhcCCCC---CCCH----HHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1291 VKLSIIPQEP--TLFRGSVRTNLDPLG---LYSD----DEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1291 ~~isiIpQdp--~LF~GTIR~NLdP~~---~~sD----eeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++++|||+| .+|+.|+++||.... ..++ +++.++|+.++-...+. .| .+.-.+|.||||+|.
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--~~----~~~~~LSgGq~qrv~ 154 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY--KD----KSPFELSGGQKRRVA 154 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh--cc----CCcccCCHHHHHHHH
Confidence 9999999998 578999999996211 1333 34677788775431111 12 233579999999975
No 462
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=6e-20 Score=205.98 Aligned_cols=144 Identities=25% Similarity=0.364 Sum_probs=113.2
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++|++++|.....++|+|+||++++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996443359999999999999999999999999999999999999999999999999999888899999999
Q ss_pred ecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC--C-CCcccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR--N-SRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||||.+|.+|+++|+..+. .++.+++.++++..+-.. + -..+++..-....-.+|.||||+|.
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 148 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIA 148 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHH
Confidence 99999999999999997432 234555555444432110 0 0002222223345679999999975
No 463
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.80 E-value=4.8e-20 Score=205.80 Aligned_cols=136 Identities=27% Similarity=0.407 Sum_probs=109.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhccc-----CCCCcEEEEcCeeCCCCC--hHH
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV-----EPAGGSILIDGVDICSMG--LKD 1288 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~-----ep~~G~I~IDGvDI~~i~--l~~ 1288 (1361)
|+++||+++|+. . ++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.|+.+++ ...
T Consensus 1 i~~~~l~~~~~~-~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD-K-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC-c-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 579999999964 2 4999999999999999999999999999999999999 999999999999998887 677
Q ss_pred HhhcCceecCcccccccchhhhcCCC----CCC----CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1289 LR~~isiIpQdp~LF~GTIR~NLdP~----~~~----sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+|++++++||+|.+|..|+++|+... +.. .++++.++++..+-.. .+ +... ..-.+|.||||+|.
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~--~~~~--~~~~LSgG~~qrv~ 151 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD--EV--KDRL--HALGLSGGQQQRLC 151 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh--HH--hccC--CcccCCHHHHHHHH
Confidence 89999999999999988999999631 111 1345677777764321 11 1110 03579999999975
No 464
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.7e-20 Score=208.39 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=112.5
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC---CCCcEEEEcCeeCCCCChHHHhh
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDLRV 1291 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~e---p~~G~I~IDGvDI~~i~l~~LR~ 1291 (1361)
.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999953 359999999999999999999999999999999999985 69999999999999998889999
Q ss_pred cCceecCcccccccchhhhcCCCC---C------CCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1292 KLSIIPQEPTLFRGSVRTNLDPLG---L------YSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1292 ~isiIpQdp~LF~GTIR~NLdP~~---~------~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++++||+|.+|..|+++|+.... . ..++++.++++..+-.. .+ +...-..+..+|.||||+|.
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~--~~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFE--EV--KDKLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCCh--hh--hHHhcCCcccCCHHHHHHHH
Confidence 999999999999999999995321 1 12335677788764311 00 01122345689999999985
No 465
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.80 E-value=5.7e-20 Score=203.90 Aligned_cols=136 Identities=26% Similarity=0.347 Sum_probs=108.3
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHH----H
Q 000671 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD----L 1289 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~----L 1289 (1361)
++++||+++|.++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.++ .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996431 35999999999999999999999999999999999999999999999999999887543 4
Q ss_pred hhcCceecCccccccc-chhhhcCC---CCCC----CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1290 RVKLSIIPQEPTLFRG-SVRTNLDP---LGLY----SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1290 R~~isiIpQdp~LF~G-TIR~NLdP---~~~~----sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|++++++||+|.+|.+ |+++|+.- +... .++++.++++..+-. .. .|. ..-.+|.||||+|.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~----~~~~LS~G~~qrv~ 150 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG--DR--LNH----YPSELSGGQQQRVA 150 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hh--hhc----ChhhcCHHHHHHHH
Confidence 6789999999999987 99999952 1111 134567777776321 11 122 23479999999985
No 466
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.80 E-value=6.7e-20 Score=206.15 Aligned_cols=144 Identities=30% Similarity=0.461 Sum_probs=114.7
Q ss_pred EEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1216 IELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
|+++|++++|... ..++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 5789999999642 235999999999999999999999999999999999999999999999999999888888899999
Q ss_pred eecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCcCCC-CCCc--ccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTPNSR-NSRI--DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+|.+|++|+++|+... ...+.+++.++++..+-.. -... +++.........+|.||||+|.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 149 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIA 149 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHH
Confidence 99999999999999999632 2345566666665543111 0011 2333333445789999999985
No 467
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=7e-20 Score=209.91 Aligned_cols=136 Identities=23% Similarity=0.341 Sum_probs=112.3
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
-|+++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+.+.+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 35999999999999999999999999999999999999999999999999999998899999999
Q ss_pred eecCcc--cccccchhhhcCCCC---CCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp--~LF~GTIR~NLdP~~---~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+| .+|..|+++|+.... ..+ ++++.++++..+-. .. .|.++ -.+|.||||+|.
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~--~~~~~----~~LSgG~~qrv~ 148 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW--DF--RDKPP----YHLSYGQKKRVA 148 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HH--hcCCh----hhCCHHHHHHHH
Confidence 999999 688999999996211 122 34567778777532 11 23222 379999999985
No 468
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=8.6e-20 Score=205.68 Aligned_cols=135 Identities=30% Similarity=0.403 Sum_probs=109.3
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCC---hHHHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~---l~~LR~~ 1292 (1361)
++++||+++|..+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 35999999999999999999999999999999999999999999999999999887 5678999
Q ss_pred CceecCcccccc-cchhhhcCC-C-----------CCC---CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccc
Q 000671 1293 LSIIPQEPTLFR-GSVRTNLDP-L-----------GLY---SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQ 1356 (1361)
Q Consensus 1293 isiIpQdp~LF~-GTIR~NLdP-~-----------~~~---sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 (1361)
++++||++.+|. .|+++|+.. . +.. .++++.++++..+-. ...-.....+|.||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--------~~~~~~~~~LS~G~~q 151 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL--------DKAYQRADQLSGGQQQ 151 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh--------hhhCCCcccCCHHHHH
Confidence 999999999887 699999952 1 111 234566777776421 1112245689999999
Q ss_pred cee
Q 000671 1357 LVT 1359 (1361)
Q Consensus 1357 ~~~ 1359 (1361)
+|.
T Consensus 152 rv~ 154 (241)
T cd03256 152 RVA 154 (241)
T ss_pred HHH
Confidence 985
No 469
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.80 E-value=9e-20 Score=202.60 Aligned_cols=135 Identities=21% Similarity=0.312 Sum_probs=107.8
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++||+++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.. .++|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5799999999643245999999999999999999999999999999999999999999999999998753 677889999
Q ss_pred ecCccccc-ccchhhhcCCCC---CCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLF-RGSVRTNLDPLG---LYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF-~GTIR~NLdP~~---~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|.+| ..|+++|+.-.. ..+ +++++++++..+-. .. .|. ..-.+|.||||+|.
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~----~~~~LS~G~~qrv~ 143 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT--DK--ANK----RARTLSGGMKRKLS 143 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HH--HhC----hhhhCCHHHHHHHH
Confidence 99999999 579999985211 112 24567777766321 11 122 23579999999975
No 470
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.80 E-value=1.5e-19 Score=207.98 Aligned_cols=133 Identities=23% Similarity=0.326 Sum_probs=113.2
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
..|+|+||+.+|. ...+|+||||+|++||.+.++|||||||||++++|.||..|++|+|.|||.||..++.+ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999997 34599999999999999999999999999999999999999999999999999999988 5899
Q ss_pred ceecCccccccc-chhhhcCCCCC-----CCHH----HHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEPTLFRG-SVRTNLDPLGL-----YSDD----EIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp~LF~G-TIR~NLdP~~~-----~sDe----eI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++|+||.-||.- ||++|+. |+- ..++ .+.++|+.++-.. .-.-.---+|.||+|+|.
T Consensus 80 g~VFQ~YALFPHltV~~NVa-fGLk~~~~~~~~~i~~rv~e~L~lV~L~~--------~~~R~p~qLSGGQqQRVA 146 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVA-FGLKVRKKLKKAEIKARVEEALELVGLEG--------FADRKPHQLSGGQQQRVA 146 (352)
T ss_pred ceeecCcccCCCCcHHHHhh-hhhhhcCCCCHHHHHHHHHHHHHHcCchh--------hhhhChhhhChHHHHHHH
Confidence 999999999987 9999996 221 2333 5678888875333 233344578999999985
No 471
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=2.7e-18 Score=221.26 Aligned_cols=93 Identities=28% Similarity=0.445 Sum_probs=83.9
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEE
Q 000671 713 IGQRGLNLSGGQKQRIQLARAVYNDA--DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790 (1361)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~~~--~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 790 (1361)
.++...+|||||+|||.||||+.++| ++|||||||++||++..+.+.+.+.+...+|+|||+|+|+++.+..||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 35778899999999999999999986 8999999999999999999988766655679999999999999988999999
Q ss_pred E------eCCeEEEecChHHH
Q 000671 791 L------EGGQITQSGNYQEL 805 (1361)
Q Consensus 791 l------~~G~i~~~g~~~~l 805 (1361)
| ++|+|++.|+++++
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred ecccccCCCCEEeeccCHHHH
Confidence 9 89999988887665
No 472
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1e-19 Score=204.14 Aligned_cols=134 Identities=28% Similarity=0.366 Sum_probs=108.2
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCCh---HHHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l---~~LR~~ 1292 (1361)
|+++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999953 349999999999999999999999999999999999999999999999999988764 567899
Q ss_pred CceecCccccccc-chhhhcCC----CCCCCH----HHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLFRG-SVRTNLDP----LGLYSD----DEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF~G-TIR~NLdP----~~~~sD----eeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++|||+|.+|.+ |+++|+.- +...+. +++.++++..+-. .. .| .....+|.||||+|.
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~----~~~~~LSgG~~qrv~ 146 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR--GA--ED----LYPAELSGGMKKRVA 146 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc--hh--hc----CChhhCCHHHHHHHH
Confidence 9999999999987 99999952 111232 3456667766421 11 12 233579999999985
No 473
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=1.9e-19 Score=194.82 Aligned_cols=137 Identities=26% Similarity=0.357 Sum_probs=106.3
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCCh---HHH-
Q 000671 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDL- 1289 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l---~~L- 1289 (1361)
++++||+..|..+. -.||+|+||+|++||.|||+||||||||||++.|-++-.|++|.|.++|.|+..++- ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996442 359999999999999999999999999999999999999999999999999999984 444
Q ss_pred hhcCceecCccccccc-chhhhcC-C--CCCCC----HHHHHHHHhhCcCCCCCCcccccCCc-hhhhhhccccccceec
Q 000671 1290 RVKLSIIPQEPTLFRG-SVRTNLD-P--LGLYS----DDEIWKVSQLTPNSRNSRIDIDFPTF-NKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1290 R~~isiIpQdp~LF~G-TIR~NLd-P--~~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 1360 (1361)
|++||+|+|+..|.+. |++||+. | +.... ++.+.+.++..+ ++...- ..--.+|.||||+|.+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lg--------l~~~~~~~~p~eLSGGqqQRVAI 153 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLG--------LEDRLLKKKPSELSGGQQQRVAI 153 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcC--------ChhhhccCCchhcCHHHHHHHHH
Confidence 4679999999999987 9999996 3 22222 233344444432 221111 1123689999999863
No 474
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.5e-19 Score=207.09 Aligned_cols=137 Identities=26% Similarity=0.334 Sum_probs=110.2
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
.|+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999644446999999999999999999999999999999999999999999999999999888889999999
Q ss_pred eecCcc--cccccchhhhcCCC---CCCCHHH----HHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEP--TLFRGSVRTNLDPL---GLYSDDE----IWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp--~LF~GTIR~NLdP~---~~~sDee----I~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+| .++..|+++||... ...++++ +.++++..+- +...-...-.+|.||||++.
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l--------~~~~~~~~~~LS~G~~qrl~ 152 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM--------EDYLDKEPQNLSGGQKQRVA 152 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC--------HHHhhCCcccCCHHHHHHHH
Confidence 999998 45677999999621 1234443 4455555532 11112233589999999875
No 475
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.79 E-value=1.4e-19 Score=200.26 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=109.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChH---HHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~---~LR~~ 1292 (1361)
++++|++++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.. .+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 3599999999999999999999999999999999999999999999999999987643 47889
Q ss_pred CceecCcccccc-cchhhhcCCC----C---CCCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLFR-GSVRTNLDPL----G---LYSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF~-GTIR~NLdP~----~---~~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++||+|.+|. .|+++|+... + ...+++++++++..+-.. . .+.. ...+|.||||+|.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~--~~~~----~~~LS~G~~qrl~ 147 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH--K--ADAF----PEQLSGGEQQRVA 147 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh--h--hhCC----hhhCCHHHHHHHH
Confidence 999999999996 5999998521 1 112456788888874321 1 1222 2579999999975
No 476
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.9e-19 Score=205.94 Aligned_cols=141 Identities=20% Similarity=0.292 Sum_probs=112.1
Q ss_pred cceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEEcCeeCCC--CC
Q 000671 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285 (1361)
Q Consensus 1213 ~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~e-----p~~G~I~IDGvDI~~--i~ 1285 (1361)
...|+++||+++|++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.|+.. .+
T Consensus 11 ~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 457999999999964 349999999999999999999999999999999999988 689999999999863 56
Q ss_pred hHHHhhcCceecCcccccccchhhhcCCCC---CC---CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPLG---LY---SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1286 l~~LR~~isiIpQdp~LF~GTIR~NLdP~~---~~---sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
..++|++++++||+|.+|.+|+++||.... .+ .++++.++++..+...+ ++..--.....+|.||||+|.
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----l~~~~~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE----CKDKLNESGYSLSGGQQQRLC 164 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch----hhhhhCCCcccCCHHHHHHHH
Confidence 778899999999999999999999996321 11 24556777887753211 011111234579999999975
No 477
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.79 E-value=8.5e-20 Score=201.88 Aligned_cols=135 Identities=24% Similarity=0.278 Sum_probs=108.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCCh---HHHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l---~~LR~~ 1292 (1361)
++++|++++|+.+ ..+|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+. ...|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 359999999999999999999999999999999999999999999999999988764 357889
Q ss_pred CceecCccccccc-chhhhcCCC---CCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLFRG-SVRTNLDPL---GLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF~G-TIR~NLdP~---~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++|||+|.+|.+ |+++|+... ...+ ++++.++++..+-.. . .|.+ .-.+|.||||+|.
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~--~~~~----~~~LS~G~~qrv~ 146 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH--K--HRAL----PAELSGGEQQRVA 146 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH--H--hhCC----hhhcCHHHHHHHH
Confidence 9999999999985 999999521 1122 345677777764211 1 1222 2479999999985
No 478
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.4e-19 Score=207.81 Aligned_cols=137 Identities=23% Similarity=0.300 Sum_probs=111.2
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
-++++||+++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|++||.|+.+.+...+|++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999643445999999999999999999999999999999999999999999999999999988888999999
Q ss_pred eecCcc--cccccchhhhcCCC-C--CCCH----HHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEP--TLFRGSVRTNLDPL-G--LYSD----DEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp--~LF~GTIR~NLdP~-~--~~sD----eeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+| .+++.|+++||... . ..+. +++.++++..+-. .. .+.+ .-.+|.||||+|.
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~--~~~~----~~~LS~G~~qrv~ 150 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME--DF--LNRE----PHRLSGGQKQRVA 150 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh--hh--hhCC----cccCCHHHHHHHH
Confidence 999999 56778999999621 1 1233 3456667765421 11 2222 2379999999875
No 479
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.79 E-value=1.5e-19 Score=198.49 Aligned_cols=131 Identities=23% Similarity=0.271 Sum_probs=106.1
Q ss_pred EEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCcee
Q 000671 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1361)
Q Consensus 1217 ~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiI 1296 (1361)
+++|++++|..+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ...|++++++
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 478999999642 359999999999999999999999999999999999999999999999999865 5677899999
Q ss_pred cCcc--cccccchhhhcCCCC---CCCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1297 PQEP--TLFRGSVRTNLDPLG---LYSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1297 pQdp--~LF~GTIR~NLdP~~---~~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||+| .+|+.|+++|+.... ...++++.++++..+-.. . .|.+ .-.+|.||||+|.
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~--~--~~~~----~~~LS~G~~qrv~ 136 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA--L--KERH----PLSLSGGQKQRLA 136 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch--h--cCCC----chhCCHHHHHHHH
Confidence 9998 478899999996321 122457888888875321 1 1222 2379999999985
No 480
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.79 E-value=1.1e-19 Score=200.62 Aligned_cols=135 Identities=30% Similarity=0.397 Sum_probs=108.0
Q ss_pred EEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCcee
Q 000671 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1361)
Q Consensus 1217 ~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiI 1296 (1361)
+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+..|++++++
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999964324599999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cCcc--cccccchhhhcCCC---CCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1297 PQEP--TLFRGSVRTNLDPL---GLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1297 pQdp--~LF~GTIR~NLdP~---~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||+| .++..|+++|+... ...+ ++++.++++..+-. .. .| .....+|.||||+|.
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~----~~~~~LSgG~~qrv~ 144 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE--GL--RD----RSPFTLSGGQKQRVA 144 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH--hh--hc----CCcccCCHHHHHHHH
Confidence 9998 46788999999531 1122 23455666665321 11 12 233579999999975
No 481
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.79 E-value=1.6e-19 Score=203.70 Aligned_cols=135 Identities=27% Similarity=0.379 Sum_probs=108.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCCh---HHHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l---~~LR~~ 1292 (1361)
|+++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999633 359999999999999999999999999999999999999999999999999988764 457899
Q ss_pred CceecCcccccc-cchhhhcCC-C-----------CCC---CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccc
Q 000671 1293 LSIIPQEPTLFR-GSVRTNLDP-L-----------GLY---SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQ 1356 (1361)
Q Consensus 1293 isiIpQdp~LF~-GTIR~NLdP-~-----------~~~---sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 (1361)
++++||+|.+|. .|+++|+.. . +.. .++++.++++..+-. .. .| ...-.+|.||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~----~~~~~LSgG~~q 152 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA--DK--AY----QRADQLSGGQQQ 152 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH--hh--hc----CCcccCCHHHHH
Confidence 999999999987 599999952 1 011 134566777766321 11 12 234579999999
Q ss_pred cee
Q 000671 1357 LVT 1359 (1361)
Q Consensus 1357 ~~~ 1359 (1361)
+|.
T Consensus 153 rv~ 155 (243)
T TIGR02315 153 RVA 155 (243)
T ss_pred HHH
Confidence 985
No 482
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.79 E-value=1.4e-19 Score=199.33 Aligned_cols=132 Identities=22% Similarity=0.275 Sum_probs=109.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++||+++|.. .++|+|+||++++||.++|+|++|||||||+++|.|+.+|++|+|.+||.++.+. .++|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 579999999953 3599999999999999999999999999999999999999999999999999875 677889999
Q ss_pred ecCcccccc-cchhhhcCCC---CCCCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLFR-GSVRTNLDPL---GLYSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF~-GTIR~NLdP~---~~~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|.+|. .|+++|+... ...+++++.++++..+-. ...-.....+|.||||+|.
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~--------~~~~~~~~~LS~G~~qrv~ 136 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK--------DSAKKKVKGFSLGMKQRLG 136 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH--------HHHhhhHhhCCHHHHHHHH
Confidence 999998884 6999999532 123567788888887432 1112345689999999974
No 483
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.8e-19 Score=205.35 Aligned_cols=142 Identities=24% Similarity=0.285 Sum_probs=112.8
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEEcCeeCCC--C
Q 000671 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--M 1284 (1361)
Q Consensus 1212 ~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~e-----p~~G~I~IDGvDI~~--i 1284 (1361)
.++.|+++|++++|.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 10 ~~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 10 APSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CCceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 3578999999999963 359999999999999999999999999999999999986 589999999999964 4
Q ss_pred ChHHHhhcCceecCcccccccchhhhcCCC----CCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccc
Q 000671 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQ 1356 (1361)
Q Consensus 1285 ~l~~LR~~isiIpQdp~LF~GTIR~NLdP~----~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 (1361)
+...+|++++++||+|.+|..|+++|+... +..+ +++++++++..+-... + +..--.....+|.||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~--~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE--V--KDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh--h--HHHHhcCCCCCCHHHHH
Confidence 567889999999999999999999999621 1122 3567788888753110 0 00112345579999999
Q ss_pred cee
Q 000671 1357 LVT 1359 (1361)
Q Consensus 1357 ~~~ 1359 (1361)
+|.
T Consensus 164 rv~ 166 (260)
T PRK10744 164 RLC 166 (260)
T ss_pred HHH
Confidence 974
No 484
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.79 E-value=2.2e-19 Score=199.62 Aligned_cols=136 Identities=25% Similarity=0.349 Sum_probs=108.1
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHH---h
Q 000671 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL---R 1290 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~L---R 1290 (1361)
|+++||+++|.++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 359999999999999999999999999999999999999999999999999998876653 4
Q ss_pred -hcCceecCcccccc-cchhhhcCC---CCCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1291 -VKLSIIPQEPTLFR-GSVRTNLDP---LGLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1291 -~~isiIpQdp~LF~-GTIR~NLdP---~~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++++||+|.+|. .|+++|+.. ....+ ++++.++++..+- +..--.....+|.||||+|.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l--------~~~~~~~~~~LS~G~~qrv~ 151 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL--------EHRINHRPSELSGGERQRVA 151 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--------hhhhhCChhhCCHHHHHHHH
Confidence 68999999999996 599999952 11122 2346667776532 21112233579999999985
No 485
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.7e-19 Score=208.25 Aligned_cols=136 Identities=22% Similarity=0.342 Sum_probs=108.9
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCC----CChHH
Q 000671 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS----MGLKD 1288 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~----i~l~~ 1288 (1361)
|+|+||+++|+++. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996432 259999999999999999999999999999999999999999999999999963 44678
Q ss_pred HhhcCceecCcc--cccccchhhhcCCCC----CCCH----HHHHHHHhhCcCCCCCCcccccCCchhhhhhccccccce
Q 000671 1289 LRVKLSIIPQEP--TLFRGSVRTNLDPLG----LYSD----DEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLV 1358 (1361)
Q Consensus 1289 LR~~isiIpQdp--~LF~GTIR~NLdP~~----~~sD----eeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1358 (1361)
+|+++++|+|+| .+|.+|+.+|+. ++ ..+. +++.++++..+-. +.. .| ...-.+|.||||+|
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~--~~----~~~~~LSgGqkqrv 153 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVA-FGPQNFGIPKEKAEKIAAEKLEMVGLA-DEF--WE----KSPFELSGGQMRRV 153 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHH-hHHHHcCCCHHHHHHHHHHHHHHcCCC-hhh--cc----CCcccCCHHHHHHH
Confidence 899999999998 799999999995 21 1232 3456677766431 111 12 22347899999997
Q ss_pred e
Q 000671 1359 T 1359 (1361)
Q Consensus 1359 ~ 1359 (1361)
.
T Consensus 154 a 154 (288)
T PRK13643 154 A 154 (288)
T ss_pred H
Confidence 5
No 486
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2e-19 Score=191.69 Aligned_cols=96 Identities=42% Similarity=0.796 Sum_probs=90.3
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
++++|++++|....+.+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999996543359999999999999999999999999999999999999999999999999999988889999999
Q ss_pred ecCcccccccchhhhc
Q 000671 1296 IPQEPTLFRGSVRTNL 1311 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NL 1311 (1361)
+||+|.+|++|+++|+
T Consensus 81 ~~~~~~~~~~t~~e~l 96 (171)
T cd03228 81 VPQDPFLFSGTIRENI 96 (171)
T ss_pred EcCCchhccchHHHHh
Confidence 9999999999999998
No 487
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.79 E-value=2.3e-19 Score=199.04 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=112.8
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCCh----HHHhh
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL----KDLRV 1291 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l----~~LR~ 1291 (1361)
|.+.|..++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578999999766 459999999999999999999999999999999999999999999999999987653 34678
Q ss_pred cCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC--C-CCcccccCCchhhhhhcccccccee
Q 000671 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR--N-SRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1292 ~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
.++++||+|.+|+.|+++||.....+++++.+++++..+-.. + ...+.++.-.....++|.||||+|.
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~ 150 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRIC 150 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHH
Confidence 899999999999999999997544456666777777663211 0 0112222222345689999999975
No 488
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.79 E-value=6.3e-16 Score=174.87 Aligned_cols=269 Identities=20% Similarity=0.213 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 280 IFIAICALLRTIAVVVGPLLLYAFVNYSNRGEEN-LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVY 358 (1361)
Q Consensus 280 ~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~-~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy 358 (1361)
++..++.++..+...+.|+++..+++...++..+ ....+.++..+++..++.......+.+...+.+.+++..+...+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888999999999986654333 344555555555555566666666666688999999999999999
Q ss_pred HHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000671 359 QKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSL-ALQLFLAIGVLFGVVGL-GALPGLVLFLICGLLNVP 436 (1361)
Q Consensus 359 ~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~-plqi~va~~~L~~~lG~-~~l~gl~v~~l~~~l~~~ 436 (1361)
+|.++.+....+++++|+++|.++.|++++.+........+.. .+.+++++++++ .++| .+++.++++.+..++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLF-FISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhccc-ccccccccccchhhhhhHhhhhh
Confidence 9999998876667889999999999999999876654444433 344444444443 3344 233344445555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000671 437 FAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV-IYWMSPTIIS 515 (1361)
Q Consensus 437 ~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~-~~~~~p~~v~ 515 (1361)
+.+..++..++..+..+++.+.++|.++|+|+||.|++|+.+.++.++.+++..+..++.......... ..........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999988887665554444333332222 2222222222
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHH
Q 000671 516 SVIFLGCAL-TGSAPLNASTIFTVLATLRSMGEPV 549 (1361)
Q Consensus 516 ~~~f~~~~l-~~~~~Lt~~~~Ft~l~lf~~l~~pl 549 (1361)
.+.+.+..+ ..++.++++.+++.+.+++.+..|+
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 333333344 5568999999999999999999886
No 489
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.78 E-value=2.5e-18 Score=199.69 Aligned_cols=206 Identities=21% Similarity=0.331 Sum_probs=165.5
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
.+..++++|.+..=+ ...+.+++|||++.+||+++|.|-.|-|-+-|+.+|.|+.++.+|+|.++|
T Consensus 254 g~~vL~V~~L~v~~~--~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 254 GEVVLEVEDLSVKDR--RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CCeEEEEeeeEeecC--CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH
Confidence 345677888776533 234689999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEecCC----cCCCCCHHHHhhcCCCC----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 ---SIAYVSQTS----WIQSGSIRDNILYGKPM----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 ---~iayv~Q~~----~i~~~ti~eni~~g~~~----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.+||||.+. .....|+.||+.++.-. +...+++..+ .+-+.++--+.+.. .+..+||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~--~li~~fdVr~~~~~----~~a~~LS 405 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR--ELIEEFDVRAPSPD----APARSLS 405 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH--HHHHHcCccCCCCC----cchhhcC
Confidence 279999985 46789999999876422 2222222211 12222222223322 4567899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHh-hcCeEEEEeCCeEEEec
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 800 (1361)
||++||+-+||-+..+|++++...||-|||....+.|.+.++....+|+.|++++-+++++- -||+|.||.+|+|+...
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 99999999999999999999999999999999999999999888889999999999999865 48999999999999776
Q ss_pred ChHH
Q 000671 801 NYQE 804 (1361)
Q Consensus 801 ~~~~ 804 (1361)
++++
T Consensus 486 ~~~~ 489 (501)
T COG3845 486 PPEE 489 (501)
T ss_pred cccc
Confidence 6554
No 490
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2e-19 Score=202.83 Aligned_cols=137 Identities=25% Similarity=0.287 Sum_probs=111.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
++++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+..++|+++++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 359999999999999999999999999999999999999999999999999999888889999999
Q ss_pred ecCcccccc-cchhhhcCCC---CCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF~-GTIR~NLdP~---~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|.+|. .|+++|+... ...+ ++++.++++..+-... ...-.+.-++|.||||+|.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~------~~~~~~~~~LS~G~~qrv~ 145 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA------EFADRYPHELSGGQQQRVG 145 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH------HHHhcChhhCCHHHHHHHH
Confidence 999999996 6999999521 1112 3456677777643210 0112334679999999974
No 491
>PRK10908 cell division protein FtsE; Provisional
Probab=99.78 E-value=3.4e-19 Score=198.21 Aligned_cols=135 Identities=21% Similarity=0.258 Sum_probs=107.5
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHH---Hhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~---LR~~ 1292 (1361)
|+++||+++|+++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.++ +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 35999999999999999999999999999999999999999999999999999877554 6889
Q ss_pred CceecCccccc-ccchhhhcCCC---CCCCHH----HHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLF-RGSVRTNLDPL---GLYSDD----EIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF-~GTIR~NLdP~---~~~sDe----eI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++||+|.+| ..|+++|+.-. ...+++ ++.++++..+-.. . .|. +.-.+|.||||+|.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~--~~~----~~~~LS~G~~qrv~ 147 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD--K--AKN----FPIQLSGGEQQRVG 147 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh--h--hhC----CchhCCHHHHHHHH
Confidence 99999999874 67999999621 123333 3556666653211 1 122 23579999999975
No 492
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.78 E-value=1.8e-19 Score=200.41 Aligned_cols=135 Identities=27% Similarity=0.427 Sum_probs=106.3
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHH-hhcCc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~L-R~~is 1294 (1361)
|+++||+++|+. . ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++ |++++
T Consensus 1 l~~~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK-S-QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC-e-eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 579999999963 3 59999999999999999999999999999999999999999999999999998887665 67899
Q ss_pred eecCccccccc-chhhhcCCCCC-C----CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEPTLFRG-SVRTNLDPLGL-Y----SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp~LF~G-TIR~NLdP~~~-~----sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+|.+|.+ |+++|+..... + ..+++.++++..++ .+.. .| ...-.+|.||||+|.
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-l~~~--~~----~~~~~LS~G~~qrv~ 142 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPR-LKER--RK----QLAGTLSGGEQQMLA 142 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHh-hhhh--hh----CchhhCCHHHHHHHH
Confidence 99999999997 99999953211 1 12234445555421 1111 12 234469999999975
No 493
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.3e-19 Score=206.59 Aligned_cols=136 Identities=26% Similarity=0.402 Sum_probs=109.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCC--CCChHHHhhc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC--SMGLKDLRVK 1292 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~--~i~l~~LR~~ 1292 (1361)
-|+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 59999999999633 35999999999999999999999999999999999999999999999999994 4556788999
Q ss_pred CceecCcc--cccccchhhhcCCC---CCCCHH----HHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEP--TLFRGSVRTNLDPL---GLYSDD----EIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp--~LF~GTIR~NLdP~---~~~sDe----eI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++||+| .+|+.|+++|+... ...+.+ .+.++++..+- +...-.+.-++|.||||++.
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL--------~~~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI--------EHLKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC--------hhhhhCCcccCCHHHHHHHH
Confidence 99999999 67899999999521 123333 34555565532 11223456789999999875
No 494
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2e-19 Score=191.98 Aligned_cols=94 Identities=36% Similarity=0.658 Sum_probs=87.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
++++|++++|.. . ++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ .++|+++++
T Consensus 1 l~~~~l~~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK-K-TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC-e-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999963 3 4999999999999999999999999999999999999999999999999998876 678899999
Q ss_pred ecCccccccc-chhhhcC
Q 000671 1296 IPQEPTLFRG-SVRTNLD 1312 (1361)
Q Consensus 1296 IpQdp~LF~G-TIR~NLd 1312 (1361)
+||+|.+|.+ |+++|+.
T Consensus 78 ~~q~~~~~~~~tv~~~~~ 95 (173)
T cd03230 78 LPEEPSLYENLTVRENLK 95 (173)
T ss_pred EecCCccccCCcHHHHhh
Confidence 9999999987 9999984
No 495
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.9e-19 Score=198.93 Aligned_cols=132 Identities=24% Similarity=0.301 Sum_probs=105.2
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
++++|++++|.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+++.+ ..|+++++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 478999999964 35999999999999999999999999999999999999999999999999998754 35788999
Q ss_pred ecCcccccc-cchhhhcCCC---CCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF~-GTIR~NLdP~---~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|.+|. .|+++|+.-. ...+ ++++.++++..+-. .. .| ...-.+|.||||+|.
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~----~~~~~LSgG~~qrl~ 140 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE--GL--LN----RYPHELSGGQQQRVA 140 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hh--hh----cChhhCCHHHHHHHH
Confidence 999999986 5999999521 1112 34566777766321 11 12 223579999999975
No 496
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.78 E-value=3.8e-19 Score=198.15 Aligned_cols=136 Identities=22% Similarity=0.270 Sum_probs=111.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
.|+++||+++|.. . ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++...+|++++
T Consensus 7 ~i~~~~l~~~~~~-~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD-A-KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC-c-eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999953 3 4999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eecCcccccccchhhhcCC----CCC-CCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEPTLFRGSVRTNLDP----LGL-YSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp~LF~GTIR~NLdP----~~~-~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+|.+|+.|+++|+.- .+. ..++++.++++..+-.. +. .|. ..-.+|.||||+|.
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~--~~~----~~~~LS~G~~qrv~ 147 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD-TI--LTK----NIAELSGGEKQRIS 147 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh-HH--hcC----CcccCCHHHHHHHH
Confidence 9999999999999999952 111 12445667777764310 11 122 23468899999874
No 497
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.5e-19 Score=200.79 Aligned_cols=136 Identities=26% Similarity=0.387 Sum_probs=108.5
Q ss_pred EEEEEEEEEeCCC--CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHH---Hh
Q 000671 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~--~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~---LR 1290 (1361)
|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+..+ +|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 125999999999999999999999999999999999999999999999999998876543 58
Q ss_pred hcCceecCcccccc-cchhhhcCC---CCCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1291 VKLSIIPQEPTLFR-GSVRTNLDP---LGLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1291 ~~isiIpQdp~LF~-GTIR~NLdP---~~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++++||+|.+|. .|+++|+.. ....+ ++++.++++..+-. +.+ |. ..-.+|.||||+|.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~--~~----~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE--DKA--DA----YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhh--hc----ChhhCCHHHHHHHH
Confidence 89999999999997 599999952 11122 44677777776321 111 11 23468999999875
No 498
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3.2e-19 Score=191.33 Aligned_cols=96 Identities=35% Similarity=0.597 Sum_probs=88.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCC--hHHHhhcC
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--LKDLRVKL 1293 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~--l~~LR~~i 1293 (1361)
|+++|++++|.+ .++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 579999999953 35999999999999999999999999999999999999999999999999999886 67788999
Q ss_pred ceecCccccccc-chhhhcCC
Q 000671 1294 SIIPQEPTLFRG-SVRTNLDP 1313 (1361)
Q Consensus 1294 siIpQdp~LF~G-TIR~NLdP 1313 (1361)
+++||+|.+|.+ |+++|+..
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred EEEecCCccCCCCCHHHheee
Confidence 999999999975 99999964
No 499
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.8e-19 Score=210.91 Aligned_cols=136 Identities=25% Similarity=0.337 Sum_probs=109.1
Q ss_pred EEEEEEEEEeCC--CCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHH---Hh
Q 000671 1216 IELRQLKIRYRP--NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1361)
Q Consensus 1216 I~f~nVs~~Y~~--~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~---LR 1290 (1361)
|+++||+++|+. +..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999962 1245999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hcCceecCcccccc-cchhhhcCCC---CCCCH----HHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1291 VKLSIIPQEPTLFR-GSVRTNLDPL---GLYSD----DEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1291 ~~isiIpQdp~LF~-GTIR~NLdP~---~~~sD----eeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++++|||+|.+|. .|+++|+.-. ...++ +++.++++..+-. .. .|. ..-.+|.||||+|.
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~--~~~----~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS--DK--ADR----YPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hh--hhC----ChhhCCHHHHHHHH
Confidence 89999999999997 6999999521 11232 3566677766321 11 122 23579999999985
No 500
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.78 E-value=3e-19 Score=200.60 Aligned_cols=134 Identities=22% Similarity=0.287 Sum_probs=106.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHH-hhcCc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~L-R~~is 1294 (1361)
++++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999963 359999999999999999999999999999999999999999999999999998887665 57799
Q ss_pred eecCccccccc-chhhhcCCC----CCC-------------CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccc
Q 000671 1295 IIPQEPTLFRG-SVRTNLDPL----GLY-------------SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQ 1356 (1361)
Q Consensus 1295 iIpQdp~LF~G-TIR~NLdP~----~~~-------------sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 (1361)
++||+|.+|.+ |+++||... ... .++++.++++..+- +..-......+|.||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--------~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL--------ADLADRPAGELSYGQQR 150 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc--------cchhhCChhhCCHHHHH
Confidence 99999999997 999998521 110 12235556665532 11112334579999999
Q ss_pred cee
Q 000671 1357 LVT 1359 (1361)
Q Consensus 1357 ~~~ 1359 (1361)
+|.
T Consensus 151 rv~ 153 (236)
T cd03219 151 RLE 153 (236)
T ss_pred HHH
Confidence 975
Done!