Your job contains 1 sequence.
>000672
MEDKHSEDEKHEEVEDIESDSGDSFIVDSESDEPSISGQDDGLHLEEHLTEEEIEELIAE
FLEVESKAAEAQEALELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALD
ELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIA
GAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDV
SEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEK
ELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKISKQKEIGSVDWTIEDSAVETR
PLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGISSVSDSALPDS
SELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDN
SLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWC
GRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAM
GSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQE
RLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSI
SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV
NLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGV
FLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVK
CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKI
MNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTND
RVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEK
PRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVF
SQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRV
KCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT
MEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGS
SQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRCAVNGI
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000672
(1360 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|K7GSF7 - symbol:LOC100514440 "Uncharacterized p... 820 4.7e-143 5
UNIPROTKB|F1MQ85 - symbol:ATRX "Uncharacterized protein" ... 820 4.7e-142 5
UNIPROTKB|F1PKC1 - symbol:ATRX "Uncharacterized protein" ... 821 1.2e-141 5
UNIPROTKB|F1LM36 - symbol:F1LM36 "Uncharacterized protein... 818 2.9e-141 5
UNIPROTKB|E1C8H5 - symbol:ATRX "Uncharacterized protein" ... 822 1.0e-140 4
MGI|MGI:103067 - symbol:Atrx "alpha thalassemia/mental re... 813 1.8e-140 5
UNIPROTKB|P46100 - symbol:ATRX "Transcriptional regulator... 813 4.9e-140 5
ZFIN|ZDB-GENE-030912-11 - symbol:atrx "alpha thalassemia/... 803 2.4e-139 3
UNIPROTKB|F1RPI9 - symbol:LOC100514440 "Uncharacterized p... 816 5.7e-138 3
ZFIN|ZDB-GENE-030131-3097 - symbol:rad54l2 "RAD54-like 2 ... 851 2.3e-109 4
UNIPROTKB|E1C963 - symbol:RAD54L2 "Uncharacterized protei... 469 1.7e-108 3
FB|FBgn0039338 - symbol:XNP "XNP" species:7227 "Drosophil... 676 1.3e-107 3
UNIPROTKB|H0Y760 - symbol:RAD54L2 "Helicase ARIP4" specie... 462 4.0e-106 3
RGD|1310600 - symbol:Rad54l "RAD54 like (S. cerevisiae)" ... 467 4.9e-106 3
RGD|1561889 - symbol:Rad54l2 "Rad54 like 2 (S. cerevisiae... 467 4.9e-106 3
UNIPROTKB|Q9Y4B4 - symbol:RAD54L2 "Helicase ARIP4" specie... 462 4.9e-106 3
MGI|MGI:1933196 - symbol:Rad54l2 "RAD54 like 2 (S. cerevi... 459 7.2e-105 3
UNIPROTKB|F1PB65 - symbol:RAD54L2 "Uncharacterized protei... 452 7.9e-105 3
WB|WBGene00006961 - symbol:xnp-1 species:6239 "Caenorhabd... 630 2.7e-100 3
WB|WBGene00007761 - symbol:rad-26 species:6239 "Caenorhab... 443 1.1e-99 6
UNIPROTKB|E1BEK4 - symbol:Bt.109773 "Uncharacterized prot... 458 1.4e-97 4
UNIPROTKB|E7EU19 - symbol:RAD54L2 "Helicase ARIP4" specie... 462 4.6e-93 3
FB|FBgn0034976 - symbol:CG4049 species:7227 "Drosophila m... 476 1.7e-82 2
DICTYBASE|DDB_G0293120 - symbol:DDB_G0293120 "CHR group p... 848 1.6e-81 3
UNIPROTKB|F1S3V8 - symbol:RAD54L "Uncharacterized protein... 432 6.3e-63 2
DICTYBASE|DDB_G0285117 - symbol:rad54b "CHR group protein... 429 7.3e-63 2
UNIPROTKB|G4N791 - symbol:MGG_06447 "SNF2 family ATP-depe... 434 5.5e-62 2
UNIPROTKB|F1PJC9 - symbol:RAD54L "Uncharacterized protein... 414 1.6e-61 2
UNIPROTKB|O12944 - symbol:RAD54L "DNA repair and recombin... 410 4.0e-61 2
ZFIN|ZDB-GENE-040426-968 - symbol:rad54l "RAD54-like (S. ... 412 4.1e-61 2
UNIPROTKB|Q92698 - symbol:RAD54L "DNA repair and recombin... 415 5.4e-61 2
UNIPROTKB|A1L4Z4 - symbol:RAD54L "Uncharacterized protein... 414 5.6e-61 2
UNIPROTKB|F1NBD4 - symbol:RAD54L "DNA repair and recombin... 407 8.8e-61 2
UNIPROTKB|F1NX31 - symbol:RAD54L "DNA repair and recombin... 407 9.7e-61 2
TAIR|locus:2094083 - symbol:RAD54 "homolog of RAD54" spec... 419 1.4e-60 3
MGI|MGI:894697 - symbol:Rad54l "RAD54 like (S. cerevisiae... 412 2.5e-60 2
UNIPROTKB|B3MMA5 - symbol:okr "DNA repair and recombinati... 396 2.6e-59 2
UNIPROTKB|B4KHL5 - symbol:okr "DNA repair and recombinati... 399 4.8e-59 2
UNIPROTKB|B4MX21 - symbol:okr "DNA repair and recombinati... 391 5.4e-59 2
POMBASE|SPAC15A10.03c - symbol:rad54 "DNA-dependent ATPas... 388 7.2e-59 2
CGD|CAL0001568 - symbol:RAD54 species:5476 "Candida albic... 376 1.3e-58 2
UNIPROTKB|Q5AKX3 - symbol:RAD54 "Putative uncharacterized... 376 1.3e-58 2
WB|WBGene00004298 - symbol:rad-54 species:6239 "Caenorhab... 384 6.8e-58 2
UNIPROTKB|B3NAN8 - symbol:okr "DNA repair and recombinati... 384 6.8e-58 2
FB|FBgn0002989 - symbol:okr "okra" species:7227 "Drosophi... 389 1.0e-57 2
UNIPROTKB|B4NXB8 - symbol:okr "DNA repair and recombinati... 384 2.3e-57 2
UNIPROTKB|B4JCS7 - symbol:okr "DNA repair and recombinati... 374 1.9e-56 2
UNIPROTKB|B4M9A8 - symbol:okr "DNA repair and recombinati... 377 3.7e-56 2
UNIPROTKB|F1P5M3 - symbol:RAD54B "DNA repair and recombin... 285 4.0e-56 3
UNIPROTKB|Q29KH2 - symbol:okr "DNA repair and recombinati... 374 4.8e-56 2
UNIPROTKB|B4GS98 - symbol:okr "DNA repair and recombinati... 374 6.1e-56 2
ZFIN|ZDB-GENE-060810-50 - symbol:rad54b "RAD54 homolog B ... 335 2.0e-55 2
CGD|CAL0000882 - symbol:orf19.607 species:5476 "Candida a... 335 4.2e-55 2
ASPGD|ASPL0000027956 - symbol:AN10677 species:162425 "Eme... 354 6.2e-55 3
POMBASE|SPCP25A2.02c - symbol:rhp26 "SNF2 family helicase... 337 6.3e-55 3
UNIPROTKB|Q9DG67 - symbol:RAD54B "DNA repair and recombin... 280 8.7e-55 4
SGD|S000003131 - symbol:RAD54 "DNA-dependent ATPase that ... 347 7.8e-54 3
UNIPROTKB|Q9Y620 - symbol:RAD54B "DNA repair and recombin... 282 2.9e-53 4
UNIPROTKB|F1MSA4 - symbol:RAD54B "Uncharacterized protein... 287 3.9e-53 3
UNIPROTKB|F1PW14 - symbol:RAD54B "Uncharacterized protein... 291 4.8e-53 3
UNIPROTKB|E2QSK6 - symbol:ERCC6L "Uncharacterized protein... 328 9.5e-53 3
ZFIN|ZDB-GENE-070228-1 - symbol:ercc6 "excision repair cr... 322 9.6e-53 3
UNIPROTKB|Q03468 - symbol:ERCC6 "DNA excision repair prot... 334 2.9e-52 4
SGD|S000003796 - symbol:RAD26 "Protein involved in transc... 333 3.8e-52 3
UNIPROTKB|F1RY50 - symbol:RAD54B "Uncharacterized protein... 274 4.3e-52 3
DICTYBASE|DDB_G0282997 - symbol:rad54 "CHR group protein"... 367 1.5e-51 2
GENEDB_PFALCIPARUM|PF08_0126 - symbol:PF08_0126 "DNA repa... 369 2.7e-51 2
UNIPROTKB|Q8IAN4 - symbol:PF08_0126 "DNA repair protein r... 369 2.7e-51 2
UNIPROTKB|F1SDX0 - symbol:ERCC6 "Uncharacterized protein"... 328 3.2e-51 4
ASPGD|ASPL0000068126 - symbol:cshA species:162425 "Emeric... 318 7.8e-51 3
UNIPROTKB|E1BYA8 - symbol:ERCC6 "Uncharacterized protein"... 328 1.2e-50 3
UNIPROTKB|D3ZZZ1 - symbol:Ercc6 "Protein Ercc6" species:1... 325 4.6e-50 5
DICTYBASE|DDB_G0281441 - symbol:ercc6 "DNA excision repai... 326 4.8e-50 3
CGD|CAL0004359 - symbol:RDH54 species:5476 "Candida albic... 311 9.7e-49 2
ZFIN|ZDB-GENE-060531-56 - symbol:ercc6l "excision repair ... 319 1.6e-48 2
FB|FBgn0032157 - symbol:Etl1 "Etl1 homologue" species:722... 314 3.3e-47 3
MGI|MGI:1923501 - symbol:Ercc6l2 "excision repair cross-c... 295 4.0e-47 2
ASPGD|ASPL0000044476 - symbol:AN2255 species:162425 "Emer... 458 4.8e-47 3
UNIPROTKB|E1BFL2 - symbol:ERCC6 "Uncharacterized protein"... 326 1.2e-46 4
UNIPROTKB|Q5T890 - symbol:RAD26L "Putative DNA repair and... 296 1.4e-46 2
TAIR|locus:2054011 - symbol:CHR8 "chromatin remodeling 8"... 319 3.0e-46 3
SGD|S000000277 - symbol:RDH54 "DNA-dependent ATPase" spec... 308 6.3e-46 3
UNIPROTKB|E2RGN3 - symbol:ERCC6L2 "Uncharacterized protei... 294 1.3e-45 3
UNIPROTKB|F1PQX1 - symbol:ERCC6L2 "Uncharacterized protei... 294 1.9e-45 3
UNIPROTKB|I3LFY4 - symbol:ERCC6L "Uncharacterized protein... 301 5.3e-45 2
RGD|1565734 - symbol:Ercc6l "excision repair cross-comple... 301 5.8e-45 3
UNIPROTKB|F5H493 - symbol:ERCC6 "DNA excision repair prot... 334 6.5e-45 2
UNIPROTKB|J9P3F5 - symbol:ERCC6L "Uncharacterized protein... 297 7.6e-45 2
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 313 8.1e-45 3
UNIPROTKB|G5E5P9 - symbol:LOC789977 "Uncharacterized prot... 296 1.8e-44 4
UNIPROTKB|F1S4L1 - symbol:ERCC6L2 "Uncharacterized protei... 292 1.9e-44 6
WB|WBGene00013792 - symbol:Y116A8C.13 species:6239 "Caeno... 280 3.0e-44 5
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 313 4.6e-44 3
ZFIN|ZDB-GENE-110411-274 - symbol:si:ch211-248d20.2 "si:c... 293 6.3e-44 3
UNIPROTKB|Q2NKX8 - symbol:ERCC6L "DNA excision repair pro... 299 2.3e-43 3
MGI|MGI:2654144 - symbol:Ercc6l "excision repair cross-co... 305 2.4e-43 4
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 298 1.1e-42 3
TAIR|locus:2040184 - symbol:PKL "PICKLE" species:3702 "Ar... 286 1.4e-42 3
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 308 1.8e-42 4
TAIR|locus:2160811 - symbol:CHR24 "chromatin remodeling 2... 281 2.3e-42 2
WARNING: Descriptions of 465 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|K7GSF7 [details] [associations]
symbol:LOC100514440 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 InterPro:IPR025766
PROSITE:PS51533 EMBL:CU928419 EMBL:CU693469 EMBL:CU928840
EMBL:FP102832 Ensembl:ENSSSCT00000036604 Uniprot:K7GSF7
Length = 2372
Score = 820 (293.7 bits), Expect = 4.7e-143, Sum P(5) = 4.7e-143
Identities = 177/428 (41%), Positives = 257/428 (60%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 1439 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1489
Query: 699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
T +++ E E V++ ++ KLK HQV G++FMW+ +S++K K G GCILA
Sbjct: 1490 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1548
Query: 759 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 816
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ + + L V
Sbjct: 1549 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEV 1608
Query: 817 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 874
L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1609 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1668
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
D +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1669 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1728
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1729 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1788
Query: 995 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 1051
V+ V+++P+Q +LY+ +LD L G N K F +Q L++IW HP LQL
Sbjct: 1789 VLAVRMTPIQCKLYQYYLDHLTGVGNSSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1848
Query: 1052 ---KDKGY 1056
++KGY
Sbjct: 1849 ISKENKGY 1856
Score = 540 (195.1 bits), Expect = 4.7e-143, Sum P(5) = 4.7e-143
Identities = 113/226 (50%), Positives = 153/226 (67%)
Query: 1100 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1159
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 1956 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 2015
Query: 1160 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1209
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2016 EKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKA 2075
Query: 1210 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 1269
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R+GQTKPV+ YR +A GTME+KIY RQ
Sbjct: 2076 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQ 2135
Query: 1270 VTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKE 1315
VTK+ L+ RVVD+QQV R + E+ L+ F D DP + K+
Sbjct: 2136 VTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKK 2181
Score = 164 (62.8 bits), Expect = 4.7e-143, Sum P(5) = 4.7e-143
Identities = 42/144 (29%), Positives = 73/144 (50%)
Query: 465 DHSVSPENINDAATDNSLHSQSLSEK------FYCTAC----NNVAIE-VHPHPILNVIV 513
D +V+ E+ ++ ++N + QSL ++ CTAC N+ + ++ HP L V++
Sbjct: 99 DEAVN-EDASNENSENDITMQSLPKEDGLHGIVSCTACGQQVNHFQKDSIYRHPSLQVLI 157
Query: 514 CKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSD 572
CK+C K + + +D+D + C WC +L+ C C FC C+ RN+ LS
Sbjct: 158 CKNCFKYYMSDDIS-RDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELST 216
Query: 573 EV-QASCWQCCCCSPS-LLKRLTS 594
+ + + W C C P LL +T+
Sbjct: 217 IMDENNQWYCYICHPEPLLDLVTA 240
Score = 60 (26.2 bits), Expect = 7.2e-48, Sum P(3) = 7.2e-48
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 498 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 548
N+ I++ PH + V DC C KK C +C+ G++ +VS
Sbjct: 1510 NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVS 1561
Score = 52 (23.4 bits), Expect = 4.7e-143, Sum P(5) = 4.7e-143
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 355 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 408
S+ E+ + + N+ TD GNN+E+ + E G +S E+S S+G
Sbjct: 25 SSEESEETSSPPRLVMNQSTDKISGSGNNSEMMENSREEG---ASSSEKSKSSG 75
Score = 47 (21.6 bits), Expect = 2.4e-47, Sum P(3) = 2.4e-47
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 300 KELALSEEQRKKFRKVKEEDDAN 322
K +A E +R+K R+V E +DA+
Sbjct: 1460 KRIAEREREREKLREVIEIEDAS 1482
Score = 46 (21.3 bits), Expect = 4.7e-143, Sum P(5) = 4.7e-143
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 643 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMN 677
+L ++ K+KI ++ E+ ++ +FS K N
Sbjct: 250 QLLQQNKKKIKVDNEKSSKVYDHTPRFSPKKNSSN 284
Score = 45 (20.9 bits), Expect = 3.1e-58, Sum P(5) = 3.1e-58
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 870 LQDGPDILVCDEAHMIKNTRADTTQALKQVK 900
L +G +I C + IK ++DTT K++K
Sbjct: 980 LPEGEEI--CHFSKGIKQNKSDTTDREKKIK 1008
Score = 44 (20.5 bits), Expect = 3.2e-129, Sum P(3) = 3.2e-129
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 297 ANEKELALSEEQRKKFRKVKEEDDANMD 324
A +E S +Q+KK R++K ++D++ +
Sbjct: 1372 AELEENQRSYKQKKKRRRIKVQEDSSSE 1399
Score = 41 (19.5 bits), Expect = 4.4e-129, Sum P(4) = 4.4e-129
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 341 KQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNL 391
K K GS + S V D K L +D + N++ +Q+L
Sbjct: 70 KSKSSGSSRSKRKPSIVTKYVESDDEKPLDEAVNEDASNENSENDITMQSL 120
Score = 41 (19.5 bits), Expect = 7.0e-46, Sum P(3) = 7.0e-46
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 572 DEVQASCWQCCCCSPSLLKR 591
D VQ W CCC S K+
Sbjct: 1521 DGVQFM-WDCCCESVKKTKK 1539
Score = 41 (19.5 bits), Expect = 7.0e-46, Sum P(3) = 7.0e-46
Identities = 23/118 (19%), Positives = 50/118 (42%)
Query: 858 KDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLM 917
+D + E C +G +++ CD H A + + + ++ ++ +NN
Sbjct: 172 RDSDGMDEQCRWCAEGGNLICCDFCH-----NAFCKKCILRNLGRKELSTIMD--ENN-- 222
Query: 918 EYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGF 975
++YC + E L + F+N +E Q + +K+ N++S +Y+ F
Sbjct: 223 QWYCYICHP-EPLLDLVTACNSVFEN-LE--QLLQQNKKKIKVDNEKSSKVYDHTPRF 276
Score = 40 (19.1 bits), Expect = 1.0e-57, Sum P(5) = 1.0e-57
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQ 963
+ + QNP E+ + + +++K M++
Sbjct: 766 KKKRQNPSESSNYDSELEKEIKSMSK 791
Score = 39 (18.8 bits), Expect = 2.5e-142, Sum P(5) = 2.5e-142
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 641 DAELGEETKRKIAIEKERQERLKS------LQVQFSSKSKLMNSVT 680
D + G+ KR + +K+RQ +S L+ + S SK+ ++ T
Sbjct: 752 DIKKGKSAKRSMISKKKRQNPSESSNYDSELEKEIKSMSKIGSART 797
Score = 38 (18.4 bits), Expect = 1.4e-128, Sum P(3) = 1.4e-128
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEE 318
D + E + AL EE+ ++ R + E
Sbjct: 1442 DKLRTETQNALKEEEERRKRIAERE 1466
Score = 38 (18.4 bits), Expect = 1.4e-128, Sum P(3) = 1.4e-128
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 292 VADAIANEKELALSEEQRKKFRKVKEEDDANMD 324
V + ++E + EE +++ + +EE+D N D
Sbjct: 1392 VQEDSSSENKSHSEEEDKEEEDEEEEEEDENDD 1424
Score = 37 (18.1 bits), Expect = 4.1e-142, Sum P(5) = 4.1e-142
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 639 LDDAELGEETKRKIAIEKERQER 661
+ D E GE+ K K KE + R
Sbjct: 1309 VSDGESGEDKKTKPKEHKEAKGR 1331
>UNIPROTKB|F1MQ85 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070087 "chromo shadow domain binding" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0030900 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 GO:GO:0000792
GO:GO:0000228 EMBL:DAAA02072507 EMBL:DAAA02072500 EMBL:DAAA02072501
EMBL:DAAA02072502 EMBL:DAAA02072503 EMBL:DAAA02072504
EMBL:DAAA02072505 EMBL:DAAA02072506 IPI:IPI01003328
Ensembl:ENSBTAT00000061308 ArrayExpress:F1MQ85 Uniprot:F1MQ85
Length = 2473
Score = 820 (293.7 bits), Expect = 4.7e-142, Sum P(5) = 4.7e-142
Identities = 177/428 (41%), Positives = 257/428 (60%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 1464 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1514
Query: 699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
T +++ E E V++ ++ KLK HQV G++FMW+ +S++K K G GCILA
Sbjct: 1515 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1573
Query: 759 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 816
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ + + L V
Sbjct: 1574 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEV 1633
Query: 817 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 874
L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1634 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1693
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
D +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1694 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1753
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1754 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1813
Query: 995 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 1051
V+ V+++P+Q +LY+ +LD L G N K F +Q L++IW HP LQL
Sbjct: 1814 VLAVRMTPIQCKLYQYYLDHLTGVGNSSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1873
Query: 1052 ---KDKGY 1056
++KGY
Sbjct: 1874 ISKENKGY 1881
Score = 540 (195.1 bits), Expect = 4.7e-142, Sum P(5) = 4.7e-142
Identities = 113/226 (50%), Positives = 153/226 (67%)
Query: 1100 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1159
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 1981 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 2040
Query: 1160 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1209
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2041 EKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKA 2100
Query: 1210 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 1269
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R+GQTKPV+ YR +A GTME+KIY RQ
Sbjct: 2101 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQ 2160
Query: 1270 VTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKE 1315
VTK+ L+ RVVD+QQV R + E+ L+ F D DP + K+
Sbjct: 2161 VTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKK 2206
Score = 157 (60.3 bits), Expect = 4.7e-142, Sum P(5) = 4.7e-142
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 493 CTAC----NNVAIE-VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDL 546
CTAC N+ + ++ HP L V++CK+C K + + +D+D + C WC +L
Sbjct: 165 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS-RDSDGMDEQCRWCAEGGNL 223
Query: 547 VSCKSCKTLFCTTCVKRNISEACLSDEV-QASCWQCCCCSPS-LLKRLTS 594
+ C C FC C+ RN+ LS + + + W C C P LL +T+
Sbjct: 224 ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTA 273
Score = 60 (26.2 bits), Expect = 2.9e-47, Sum P(3) = 2.9e-47
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 498 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 548
N+ I++ PH + V DC C KK C +C+ G++ +VS
Sbjct: 1535 NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVS 1586
Score = 52 (23.4 bits), Expect = 4.7e-142, Sum P(5) = 4.7e-142
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 355 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 408
S+ E+ + + N+ TD GNN+++ + E G +S E+S S+G
Sbjct: 20 SSEESEETSSPPRLVMNQSTDKASGSGNNSDMMENSREEG---ASSAEKSKSSG 70
Score = 48 (22.0 bits), Expect = 1.2e-141, Sum P(5) = 1.2e-141
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 341 KQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVL 396
K K GS + S V D K+L +D + N++ +Q+L G +
Sbjct: 65 KSKSSGSSRSKRKPSIVTKYVESDDEKTLDETVNEDASNENSENDITMQSLPKGTV 120
Score = 47 (21.6 bits), Expect = 2.9e-47, Sum P(3) = 2.9e-47
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 300 KELALSEEQRKKFRKVKEEDDAN 322
K +A E +R+K R+V E +DA+
Sbjct: 1485 KRIAEREREREKLREVIEIEDAS 1507
Score = 46 (21.3 bits), Expect = 2.3e-129, Sum P(4) = 2.3e-129
Identities = 22/68 (32%), Positives = 30/68 (44%)
Query: 340 SKQKEIGSVDWTIEDSAVETRPLVDA-SKSLSNKKTDDGDMPGNNNEVALQNLETGVLES 398
SKQ EI VD I DS L D S S S+ TD + NN + ++ G +
Sbjct: 711 SKQSEI--VDH-ISDSDEMLTILKDMPSMSHSSSDTDINEPHTNNKKTFYSEIQRGKDDK 767
Query: 399 SVKERSLS 406
++R S
Sbjct: 768 RKRKRKSS 775
Score = 45 (20.9 bits), Expect = 4.7e-142, Sum P(5) = 4.7e-142
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 639 LDDAELGEETKRKIAIEKERQER 661
L D E GEE K K KE + R
Sbjct: 1335 LSDGESGEEKKMKPKEHKEAKSR 1357
Score = 45 (20.9 bits), Expect = 4.7e-142, Sum P(5) = 4.7e-142
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 643 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMN 677
+L ++ K+KI ++ E+ ++ +FS K N
Sbjct: 283 QLLQQNKKKIKVDNEKTSKVYEHAPRFSPKKNSSN 317
Score = 44 (20.5 bits), Expect = 4.1e-129, Sum P(3) = 4.1e-129
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 297 ANEKELALSEEQRKKFRKVKEEDDANMD 324
A +E S +Q+KK R++K ++D++ +
Sbjct: 1398 AELEENQRSYKQKKKRRRIKVQEDSSSE 1425
Score = 42 (19.8 bits), Expect = 6.0e-129, Sum P(4) = 6.0e-129
Identities = 19/75 (25%), Positives = 29/75 (38%)
Query: 286 NSDDPFVADAIANEKELALSEEQRKKF--RKVKEEDDANMDXXXXXXXXXXXXXXISKQK 343
+S D + + N K+ SE QR K RK K + + ISK+K
Sbjct: 739 SSSDTDINEPHTNNKKTFYSEIQRGKDDKRKRKRKSSTSGSDFDIKKGKSVKKAIISKKK 798
Query: 344 EIGSVDWTIEDSAVE 358
+ + DS +E
Sbjct: 799 RQNQSESSNYDSELE 813
Score = 41 (19.5 bits), Expect = 8.3e-46, Sum P(3) = 8.3e-46
Identities = 23/118 (19%), Positives = 50/118 (42%)
Query: 858 KDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLM 917
+D + E C +G +++ CD H A + + + ++ ++ +NN
Sbjct: 205 RDSDGMDEQCRWCAEGGNLICCDFCH-----NAFCKKCILRNLGRKELSTIMD--ENN-- 255
Query: 918 EYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGF 975
++YC + E L + F+N +E Q + +K+ N+++ +YE F
Sbjct: 256 QWYCYICHP-EPLLDLVTACNSVFEN-LE--QLLQQNKKKIKVDNEKTSKVYEHAPRF 309
Score = 41 (19.5 bits), Expect = 8.1e-45, Sum P(4) = 8.1e-45
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 572 DEVQASCWQCCCCSPSLLKR 591
D VQ W CCC S K+
Sbjct: 1546 DGVQFM-WDCCCESVKKTKK 1564
Score = 40 (19.1 bits), Expect = 1.9e-128, Sum P(5) = 1.9e-128
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 349 DWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGV-LESSVKERSLSN 407
D T + + P + S + + D +P + E +NLET + ++SS + + N
Sbjct: 483 DSTEHKKSDKKEPQYEPSNTAEDLDMDIVSVPSSVPEDIFENLETAMEVQSSAEYQGDGN 542
Score = 39 (18.8 bits), Expect = 2.0e-141, Sum P(5) = 2.0e-141
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 641 DAELGEETKRKIAIEKERQERLKS 664
D + G+ K+ I +K+RQ + +S
Sbjct: 782 DIKKGKSVKKAIISKKKRQNQSES 805
Score = 39 (18.8 bits), Expect = 1.1e-129, Sum P(5) = 1.1e-129
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 446 IIGSDEA-DVVKDECSTKLEDHSVSPENINDAATDN 480
I SDE ++KD S HS S +IN+ T+N
Sbjct: 720 ISDSDEMLTILKDMPSMS---HSSSDTDINEPHTNN 752
Score = 39 (18.8 bits), Expect = 1.4e-128, Sum P(3) = 1.4e-128
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 305 SEEQRKKFRKVKEEDDANMD 324
SEE +++ + EE+D N D
Sbjct: 1430 SEEDKEEDEEEDEEEDENDD 1449
Score = 38 (18.4 bits), Expect = 1.7e-128, Sum P(3) = 1.7e-128
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEE 318
D + E + AL EE+ ++ R + E
Sbjct: 1467 DKLRTETQNALKEEEERRKRIAERE 1491
Score = 38 (18.4 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 24/106 (22%), Positives = 42/106 (39%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQKEIGSVDWTIE 353
D I+ E + E+ +F + D+ +M K K+ S +
Sbjct: 1872 DYISKENKGYFDEDSMDEFI-ASDSDETSMSLSSDDYTKKKKAKG-KKGKKDSSSSGSGS 1929
Query: 354 DSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESS 399
D+ VE + + S+S + + D GNN V+L+ E+ SS
Sbjct: 1930 DNDVEVIKVWN-SRSRGGGE-GNVDETGNNPSVSLKLEESKATSSS 1973
>UNIPROTKB|F1PKC1 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10779 GeneTree:ENSGT00550000074619 CTD:546
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 EMBL:AAEX03026550
EMBL:AAEX03026551 EMBL:AAEX03026552 EMBL:AAEX03026553
EMBL:AAEX03026554 EMBL:AAEX03026555 EMBL:AAEX03026556
RefSeq:XP_538084.2 Ensembl:ENSCAFT00000027324 GeneID:480963
KEGG:cfa:480963 Uniprot:F1PKC1
Length = 2489
Score = 821 (294.1 bits), Expect = 1.2e-141, Sum P(5) = 1.2e-141
Identities = 177/428 (41%), Positives = 257/428 (60%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 1480 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1530
Query: 699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
T +++ E E V++ ++ KLK HQV G++FMW+ +S++K K G GCILA
Sbjct: 1531 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1589
Query: 759 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 816
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ + + L V
Sbjct: 1590 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEV 1649
Query: 817 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 874
L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1650 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1709
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
D +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1710 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1769
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1770 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1829
Query: 995 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 1051
V+ V+++P+Q +LY+ +LD L G N K F +Q L++IW HP LQL
Sbjct: 1830 VLAVRMTPIQCKLYQYYLDHLTGVGNSNEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1889
Query: 1052 ---KDKGY 1056
++KGY
Sbjct: 1890 ISKENKGY 1897
Score = 539 (194.8 bits), Expect = 1.2e-141, Sum P(5) = 1.2e-141
Identities = 113/226 (50%), Positives = 153/226 (67%)
Query: 1100 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1159
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 1997 DWYKDFVTDADAEILEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 2056
Query: 1160 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1209
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2057 EKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKA 2116
Query: 1210 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 1269
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R+GQTKPV+ YR +A GTME+KIY RQ
Sbjct: 2117 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQ 2176
Query: 1270 VTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKE 1315
VTK+ L+ RVVD+QQV R + E+ L+ F D DP + K+
Sbjct: 2177 VTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKK 2222
Score = 157 (60.3 bits), Expect = 1.2e-141, Sum P(5) = 1.2e-141
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 493 CTAC----NNVAIE-VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDL 546
CTAC N+ + ++ HP L V++CK+C K + + +D+D + C WC +L
Sbjct: 170 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS-RDSDGMDEQCRWCAEGGNL 228
Query: 547 VSCKSCKTLFCTTCVKRNISEACLSDEV-QASCWQCCCCSPS-LLKRLTS 594
+ C C FC C+ RN+ LS + + + W C C P LL +T+
Sbjct: 229 ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTA 278
Score = 60 (26.2 bits), Expect = 1.8e-47, Sum P(3) = 1.8e-47
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 498 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 548
N+ I++ PH + V DC C KK C +C+ G++ +VS
Sbjct: 1551 NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVS 1602
Score = 50 (22.7 bits), Expect = 1.1e-129, Sum P(4) = 1.1e-129
Identities = 24/123 (19%), Positives = 49/123 (39%)
Query: 286 NSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQKEI 345
N+ + V DA +E ++ E+ RK + +A + + +Q+
Sbjct: 427 NTKEHKVIDA-KSETKVRKGEKPGALERKDISKSEAKLSRKQVDSEHMDQSNTVQEQRAN 485
Query: 346 GSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGV-LESSVKERS 404
SV + S + P + + + + D +P + E +NLET + ++SS +
Sbjct: 486 KSVSGEHKKSDKKEEPQYEPANTSEDLDMDIVSVPSSVPEDIFENLETAMEVQSSTDNQG 545
Query: 405 LSN 407
N
Sbjct: 546 DGN 548
Score = 47 (21.6 bits), Expect = 1.2e-141, Sum P(5) = 1.2e-141
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 341 KQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVL 396
K K GS + S V D K L +D + N++ +Q+L G +
Sbjct: 70 KSKSSGSSRSKRKPSVVTKYVESDDEKPLDETVNEDASNENSENDITMQSLPKGTV 125
Score = 47 (21.6 bits), Expect = 3.8e-47, Sum P(3) = 3.8e-47
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 300 KELALSEEQRKKFRKVKEEDDAN 322
K +A E +R+K R+V E +DA+
Sbjct: 1501 KRIAEREREREKLREVIEIEDAS 1523
Score = 46 (21.3 bits), Expect = 1.2e-141, Sum P(5) = 1.2e-141
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 643 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMN 677
+L ++ K+KI ++ E+ ++ +FS K N
Sbjct: 288 QLLQQNKKKIKVDNEKSNKVYDHTPRFSPKKNSSN 322
Score = 44 (20.5 bits), Expect = 2.0e-141, Sum P(5) = 2.0e-141
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 641 DAELGEETKRKIAIEKERQERLKS------LQVQFSSKSKL 675
D + G+ KR I +K+RQ + +S L+ + S SK+
Sbjct: 791 DIKKGKSAKRSIISKKKRQNQSESSNYDSELEKEIKSMSKI 831
Score = 44 (20.5 bits), Expect = 2.6e-141, Sum P(5) = 2.6e-141
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 355 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 408
S+ E+ + + N+ T+ GNN+++ + E G +S E+S S+G
Sbjct: 25 SSEESEETNSPPRLVMNQSTEKVGGSGNNSDMMENSKEEG---ASSSEKSKSSG 75
Score = 44 (20.5 bits), Expect = 4.1e-129, Sum P(3) = 4.1e-129
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 297 ANEKELALSEEQRKKFRKVKEEDDANMD 324
A +E S +Q+KK R++K ++D++ +
Sbjct: 1413 AELEENQRSYKQKKKRRRIKVQEDSSSE 1440
Score = 43 (20.2 bits), Expect = 2.2e-45, Sum P(3) = 2.2e-45
Identities = 23/118 (19%), Positives = 51/118 (43%)
Query: 858 KDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLM 917
+D + E C +G +++ CD H A + + + ++ ++ +NN
Sbjct: 210 RDSDGMDEQCRWCAEGGNLICCDFCH-----NAFCKKCILRNLGRKELSTIMD--ENN-- 260
Query: 918 EYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGF 975
++YC + E L + F+N +E Q + +K+ N++S+ +Y+ F
Sbjct: 261 QWYCYICHP-EPLLDLVTACNSVFEN-LE--QLLQQNKKKIKVDNEKSNKVYDHTPRF 314
Score = 41 (19.5 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 572 DEVQASCWQCCCCSPSLLKR 591
D VQ W CCC S K+
Sbjct: 1562 DGVQFM-WDCCCESVKKTKK 1580
Score = 40 (19.1 bits), Expect = 5.3e-141, Sum P(5) = 5.3e-141
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 639 LDDAELGEETKRKIAIEKERQER 661
+ D E GEE K K KE + R
Sbjct: 1350 VSDGESGEEKKMKPKEHKEAKGR 1372
Score = 39 (18.8 bits), Expect = 4.2e-128, Sum P(4) = 4.2e-128
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 293 ADAIANEKELALSEEQRKKFRKVKEE 318
AD + + KE + + + KK + KE+
Sbjct: 921 ADKLPSGKEASFNSPEDKKVAETKEK 946
Score = 38 (18.4 bits), Expect = 1.7e-128, Sum P(3) = 1.7e-128
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEE 318
D + E + AL EE+ ++ R + E
Sbjct: 1483 DKLRTETQNALKEEEERRKRIAERE 1507
>UNIPROTKB|F1LM36 [details] [associations]
symbol:F1LM36 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 InterPro:IPR025766
PROSITE:PS51533 IPI:IPI00958931 Ensembl:ENSRNOT00000042751
ArrayExpress:F1LM36 Uniprot:F1LM36
Length = 2467
Score = 818 (293.0 bits), Expect = 2.9e-141, Sum P(5) = 2.9e-141
Identities = 177/428 (41%), Positives = 257/428 (60%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 1461 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1511
Query: 699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
T +++ E E V++ ++ KLK HQV G++FMW+ +S++K K G GCILA
Sbjct: 1512 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1570
Query: 759 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP--SELKPLRV 816
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ ++ + L V
Sbjct: 1571 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLNDAEKLEV 1630
Query: 817 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 874
L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1631 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1690
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
D +VCDE H++KN + ++A+ +K +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1691 DFVVCDEGHILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1750
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1751 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1810
Query: 995 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 1051
V+ V+++ +Q +LY+ +LD L G N K F +Q L++IW HP LQL
Sbjct: 1811 VLAVRMTAIQCKLYQYYLDHLTGNNNSTDGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1870
Query: 1052 ---KDKGY 1056
++KGY
Sbjct: 1871 ISKENKGY 1878
Score = 541 (195.5 bits), Expect = 2.9e-141, Sum P(5) = 2.9e-141
Identities = 113/226 (50%), Positives = 153/226 (67%)
Query: 1100 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1159
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 1975 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 2034
Query: 1160 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1209
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2035 EKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKA 2094
Query: 1210 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 1269
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R+GQTKPV+ YR +A GTME+KIY RQ
Sbjct: 2095 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQ 2154
Query: 1270 VTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKE 1315
VTK+ L+ RVVD+QQV R + E+ L+ F D DP + K+
Sbjct: 2155 VTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKK 2200
Score = 158 (60.7 bits), Expect = 2.9e-141, Sum P(5) = 2.9e-141
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 493 CTAC----NNVAIE-VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDL 546
CTAC N+ + ++ HP L V++CK+C K + + +D+D + C WC +L
Sbjct: 170 CTACGQQVNHFQKDSIYRHPSLKVLICKNCFKYYMSDDIS-RDSDGMDEQCRWCAEGGNL 228
Query: 547 VSCKSCKTLFCTTCVKRNISEACLSDEV-QASCWQCCCCSPS-LLKRLTS 594
+ C C FC C+ RN+ LS + + + W C C P LL +T+
Sbjct: 229 ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQPEPLLDLVTA 278
Score = 60 (26.2 bits), Expect = 1.7e-47, Sum P(3) = 1.7e-47
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 498 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 548
N+ I++ PH + V DC C KK C +C+ G++ +VS
Sbjct: 1532 NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVS 1583
Score = 48 (22.0 bits), Expect = 2.1e-129, Sum P(3) = 2.1e-129
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 297 ANEKELALSEEQRKKFRKVKEEDDANMD 324
A +E S +Q+KK R++K ++D++ D
Sbjct: 1393 AELEENQRSYKQKKKRRRIKVQEDSSSD 1420
Score = 48 (22.0 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 286 NSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDAN 322
+S D F+A ++E ++LS +++KK + K D++
Sbjct: 1882 DSMDEFIASD-SDETSMSLSSDEKKKTKGKKGRKDSS 1917
Score = 47 (21.6 bits), Expect = 2.9e-141, Sum P(5) = 2.9e-141
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 355 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 408
S+ E+ + + + N+ TD G N+++ + E G +S E+S S+G
Sbjct: 25 SSEESEETCSSPRLVMNQSTDKISASGLNSDMMENSKEEG---TSTSEKSKSSG 75
Score = 47 (21.6 bits), Expect = 2.2e-47, Sum P(3) = 2.2e-47
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 300 KELALSEEQRKKFRKVKEEDDAN 322
K +A E +R+K R+V E +DA+
Sbjct: 1482 KRIAEREREREKLREVIEIEDAS 1504
Score = 46 (21.3 bits), Expect = 6.8e-57, Sum P(5) = 6.8e-57
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 643 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGD 684
+L ++ K+KI ++ E+ ++ +FS K NS + +G+
Sbjct: 288 QLLQQNKKKIKVDSEKTSKVCDQTSKFSPKK---NSSSCNGE 326
Score = 43 (20.2 bits), Expect = 2.9e-141, Sum P(5) = 2.9e-141
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 639 LDDAELGEETKRKIAIEKERQER 661
L D E GEE K K KE + R
Sbjct: 1330 LSDGESGEEKKTKPKEHKETKGR 1352
Score = 43 (20.2 bits), Expect = 6.8e-57, Sum P(5) = 6.8e-57
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 879 CDEAHMIKNTRADTTQALKQVKCQRR 904
C EA KN R + A KC+ R
Sbjct: 592 CQEAPQEKNARKSSGVARSSEKCRPR 617
Score = 42 (19.8 bits), Expect = 0.00011, Sum P(5) = 0.00011
Identities = 14/70 (20%), Positives = 33/70 (47%)
Query: 1268 RQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCA 1327
R+ K + +D + H+ + K + + + D D + A+ KE Q +++
Sbjct: 679 RKKDKRNSSDCAIDNPKPHK-VPKAKQPGIGDQNSDS--DEMLAILKEASQMCHSSSSDT 735
Query: 1328 LKHKLPLSHE 1337
++LP++H+
Sbjct: 736 DINELPINHK 745
Score = 41 (19.5 bits), Expect = 1.7e-45, Sum P(3) = 1.7e-45
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 572 DEVQASCWQCCCCSPSLLKR 591
D VQ W CCC S K+
Sbjct: 1543 DGVQFM-WDCCCESVKKTKK 1561
Score = 38 (18.4 bits), Expect = 2.4e-128, Sum P(3) = 2.4e-128
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEE 318
D + E + AL EE+ ++ R + E
Sbjct: 1464 DKLRTETQNALKEEEERRKRIAERE 1488
Score = 38 (18.4 bits), Expect = 4.3e-45, Sum P(3) = 4.3e-45
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 858 KDRNMAREICHALQDGPDILVCDEAH 883
+D + E C +G +++ CD H
Sbjct: 210 RDSDGMDEQCRWCAEGGNLICCDFCH 235
>UNIPROTKB|E1C8H5 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0070087 "chromo shadow domain binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 GO:GO:0000792
GO:GO:0000228 EMBL:AADN02013550 EMBL:AADN02013551 IPI:IPI00573178
Ensembl:ENSGALT00000012737 Uniprot:E1C8H5
Length = 2434
Score = 822 (294.4 bits), Expect = 1.0e-140, Sum P(4) = 1.0e-140
Identities = 178/428 (41%), Positives = 261/428 (60%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
+ D +L ET+ + KE +ER K + + + KL + ++ D S +
Sbjct: 1426 IKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIE-DASP-----LKCPIT 1476
Query: 699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
T +++ E E V++ SI +LK HQV G++FMW+ +S++K K+ G GCILA
Sbjct: 1477 TKLVLDEDEETKEPLVQVHRSIVTRLKPHQVDGVQFMWDCCCESVKKTKTSP-GSGCILA 1535
Query: 759 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 816
H MGLGKT QV++FL+T + L RTAL+V P+N NW EF KW+ + + L V
Sbjct: 1536 HCMGLGKTLQVVSFLHTVLLCDKLNFRTALVVCPLNTALNWLNEFEKWQEGLEDDEKLEV 1595
Query: 817 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 874
L V R + R+ +L +W+ +GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1596 CELATVKRPQERSYMLQRWQDEGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1655
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
D +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1656 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1715
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1716 KEFRNRFINPIQNGQCADSTLVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKYEY 1775
Query: 995 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 1051
V+ V+++P+Q +LY+ +LD L G K F +Q L++IW HP LQL
Sbjct: 1776 VLEVRMTPIQCKLYQYYLDHLTGVGGGNEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1835
Query: 1052 ---KDKGY 1056
++KGY
Sbjct: 1836 ISKENKGY 1843
Score = 540 (195.1 bits), Expect = 1.0e-140, Sum P(4) = 1.0e-140
Identities = 113/226 (50%), Positives = 151/226 (66%)
Query: 1100 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLS---- 1155
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L
Sbjct: 1943 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEELGDKVLVFSQSLISLDLIEDFLELANR 2002
Query: 1156 ------KLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1209
K P +GK W + D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2003 EKTDKEKPPIYKGEGK-WFRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKA 2061
Query: 1210 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 1269
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R+GQ+KPVF YR +A GTME+KIY RQ
Sbjct: 2062 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQSKPVFVYRFLAQGTMEDKIYDRQ 2121
Query: 1270 VTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKE 1315
VTK+ L+ RVVD+QQV R + E+ L+ F D DP + K+
Sbjct: 2122 VTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKK 2167
Score = 157 (60.3 bits), Expect = 1.0e-140, Sum P(4) = 1.0e-140
Identities = 35/110 (31%), Positives = 55/110 (50%)
Query: 493 CTAC----NNVAIE-VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDL 546
CTAC N+ + ++ HP L V++CK C K + + +D+D + C WC +L
Sbjct: 167 CTACGQQVNHFQKDSIYRHPTLKVLICKTCYKYYMSDDIS-RDSDGMDEQCRWCAEGGNL 225
Query: 547 VSCKSCKTLFCTTCVKRNISEACLSDEV-QASCWQCCCCSPS-LLKRLTS 594
+ C C FC C+ RN+ LS + + + W C C P LL +T+
Sbjct: 226 ICCDFCHNAFCKKCILRNLGRKELSTILDENNQWHCYSCHPEPLLDLVTA 275
Score = 53 (23.7 bits), Expect = 1.4e-46, Sum P(3) = 1.4e-46
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 498 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 548
++ + PH + V DC C KK C +C+ G++ +VS
Sbjct: 1497 SIVTRLKPHQVDGVQFMWDCCCESVKKTKTSPGSGCILAHCMGLGKTLQVVS 1548
Score = 47 (21.6 bits), Expect = 1.0e-129, Sum P(3) = 1.0e-129
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 297 ANEKELALSEEQRKKFRKVKEEDDANMD 324
A +E S +Q+KK R++K DD++ +
Sbjct: 1351 AEAEENQRSYKQKKKRRRIKVPDDSSSE 1378
Score = 47 (21.6 bits), Expect = 1.4e-46, Sum P(3) = 1.4e-46
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 300 KELALSEEQRKKFRKVKEEDDAN 322
K +A E +R+K R+V E +DA+
Sbjct: 1447 KRIAEREREREKLREVIEIEDAS 1469
Score = 44 (20.5 bits), Expect = 2.3e-56, Sum P(4) = 2.3e-56
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 942 QNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 992
+N E+ +NS ED K R +L +L V + KK P +T
Sbjct: 1256 ENEKEDNSESNSEEEDSKKPRYRHRLLRHKLT--VSDGESGEEKKGKPKET 1304
Score = 43 (20.2 bits), Expect = 1.1e-128, Sum P(5) = 1.1e-128
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 354 DSAVE-TRP--LVDASK-SLSNKKTDDGDMPGNNNEVALQNLETGVLESS 399
DS V+ RP L + K ++ + +D +MP EVA+ + + ++S+
Sbjct: 697 DSTVDGPRPNKLCKSKKPAILDNSSDSDEMPAVLKEVAMMSRSSSDIDSN 746
Score = 42 (19.8 bits), Expect = 1.2e-128, Sum P(4) = 1.2e-128
Identities = 18/93 (19%), Positives = 37/93 (39%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQ--KEIGSVDWT 351
DA+ ++K E+++ +K + + N I K KE + T
Sbjct: 1068 DAVQSKKRPEAKEKKKISHKKKITKKEQNESSSSDEESYEDKKKKIKKGSVKENKRSNLT 1127
Query: 352 IEDSAVETRPLVDASKSLSNKKTDDGDMPGNNN 384
E V + +V +S S ++ D+ + G+ +
Sbjct: 1128 -EKKKVSKKVIVSSSSSSDKEENDEQNSTGDGS 1159
Score = 42 (19.8 bits), Expect = 1.7e-88, Sum P(4) = 1.7e-88
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 1026 KIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRXXXXXXXXXXNMDYNVVIGEK--PRN 1083
+I K + GY + +H +LT+++ + M +N+ G P N
Sbjct: 2184 QINKEYIVGYHEHDSLLDHKEEEELTEEERKAAWAEYEAEKKGLTMRFNMPTGTNMLPTN 2243
Query: 1084 MN 1085
N
Sbjct: 2244 FN 2245
Score = 42 (19.8 bits), Expect = 2.3e-56, Sum P(4) = 2.3e-56
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 648 TKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGA 689
+KRK+ ++K + + + + SS K +N + D S G+
Sbjct: 853 SKRKVDLKKRKGKSSEDDAAEKSSPEKEINHSSEDKKASVGS 894
Score = 41 (19.5 bits), Expect = 1.1e-128, Sum P(5) = 1.1e-128
Identities = 24/112 (21%), Positives = 46/112 (41%)
Query: 214 NDGS-ENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFP 272
+D S E G K+ +SVN+ + D SE+ S ++ LA + +K
Sbjct: 598 HDSSLEKGSKDERTEKCDSVNQSSNAD-SER-----STENETLSLAEESDLRRSPRVKTT 651
Query: 273 GXXXXXXXXXXXGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 324
NS++ ++ +NEK S +Q ++ + + D+ +D
Sbjct: 652 PLRRQTDVNPLTSNSEED--SNDTSNEKRKRRSSKQSRRKKDKRNSSDSTVD 701
Score = 41 (19.5 bits), Expect = 3.9e-44, Sum P(4) = 3.9e-44
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 572 DEVQASCWQCCCCSPSLLKRLTS 594
D VQ W CCC S+ K TS
Sbjct: 1508 DGVQFM-WDCCC--ESVKKTKTS 1527
Score = 39 (18.8 bits), Expect = 1.0e-140, Sum P(4) = 1.0e-140
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 639 LDDAELGEETKRKIAIEKERQER 661
+ D E GEE K K KE + R
Sbjct: 1288 VSDGESGEEKKGKPKETKEGKRR 1310
Score = 39 (18.8 bits), Expect = 1.8e-128, Sum P(5) = 1.8e-128
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 288 DDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 324
DD + + K L + ++ KK +K+ E ANM+
Sbjct: 327 DDSYSGSLTYSYKALMVPKDMLKKTKKLVETT-ANMN 362
Score = 38 (18.4 bits), Expect = 8.9e-129, Sum P(3) = 8.9e-129
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEE 318
D + E + AL EE+ ++ R + E
Sbjct: 1429 DKLRTETQNALKEEEERRKRIAERE 1453
Score = 38 (18.4 bits), Expect = 3.2e-128, Sum P(4) = 3.2e-128
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 285 GNSDDPFVADAIANEKELALSEEQRK 310
G S + A+ + EKE+ S E +K
Sbjct: 864 GKSSEDDAAEKSSPEKEINHSSEDKK 889
Score = 38 (18.4 bits), Expect = 1.1e-44, Sum P(3) = 1.1e-44
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 858 KDRNMAREICHALQDGPDILVCDEAH 883
+D + E C +G +++ CD H
Sbjct: 207 RDSDGMDEQCRWCAEGGNLICCDFCH 232
Score = 37 (18.1 bits), Expect = 1.7e-140, Sum P(4) = 1.7e-140
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 644 LGEETKRKIAIEKERQERLKSLQVQFSSKS 673
LG+ K +A+E+ +++L V+ K+
Sbjct: 394 LGDIKKAHLALEEGLNLEIQALDVKIKEKN 423
Score = 37 (18.1 bits), Expect = 4.1e-128, Sum P(4) = 4.1e-128
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 488 SEKFYCTACNNVAIEVHPHPILNVIVCKD 516
+ +++C +C HP P+L+++ D
Sbjct: 256 NNQWHCYSC-------HPEPLLDLVTACD 277
>MGI|MGI:103067 [details] [associations]
symbol:Atrx "alpha thalassemia/mental retardation syndrome
X-linked homolog (human)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IDA] [GO:0000792 "heterochromatin" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0070087 "chromo shadow domain
binding" evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 MGI:MGI:103067 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0030900 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10779
GeneTree:ENSGT00550000074619 CTD:546 HOVERGEN:HBG000104
OrthoDB:EOG4PVNXQ InterPro:IPR025766 PROSITE:PS51533 EMBL:AF026032
EMBL:AL671893 EMBL:AL670660 EMBL:X99643 IPI:IPI00322707
RefSeq:NP_033556.2 UniGene:Mm.10141 ProteinModelPortal:Q61687
SMR:Q61687 IntAct:Q61687 STRING:Q61687 PhosphoSite:Q61687
PaxDb:Q61687 PRIDE:Q61687 Ensembl:ENSMUST00000113573 GeneID:22589
KEGG:mmu:22589 HOGENOM:HOG000231302 InParanoid:A2ADH4
NextBio:302925 Bgee:Q61687 Genevestigator:Q61687
GermOnline:ENSMUSG00000031229 GO:GO:0000792 GO:GO:0000228
Uniprot:Q61687
Length = 2476
Score = 813 (291.2 bits), Expect = 1.8e-140, Sum P(5) = 1.8e-140
Identities = 177/428 (41%), Positives = 256/428 (59%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 1469 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1519
Query: 699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
T +++ E E V++ ++ KLK HQV G++FMW+ +S+ K K G GCILA
Sbjct: 1520 TKLVLDENEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVEKTKKSP-GSGCILA 1578
Query: 759 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP--SELKPLRV 816
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ ++ + L V
Sbjct: 1579 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLNDNEKLEV 1638
Query: 817 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 874
L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1639 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKDIFNKALVDPGP 1698
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
D +VCDE H++KN + ++A+ +K +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1699 DFVVCDEGHILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1758
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1759 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1818
Query: 995 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 1051
V+ V+++ +Q +LY+ +LD L G N K F +Q L++IW HP LQL
Sbjct: 1819 VLAVRMTAIQCKLYQYYLDHLTGVGNSTEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1878
Query: 1052 ---KDKGY 1056
++KGY
Sbjct: 1879 ISKENKGY 1886
Score = 541 (195.5 bits), Expect = 1.8e-140, Sum P(5) = 1.8e-140
Identities = 113/226 (50%), Positives = 153/226 (67%)
Query: 1100 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1159
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 1983 DWYKDFVTDTDAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 2042
Query: 1160 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1209
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2043 EKTEDKEKPLIYKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKA 2102
Query: 1210 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 1269
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R+GQTKPV+ YR +A GTME+KIY RQ
Sbjct: 2103 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQ 2162
Query: 1270 VTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKE 1315
VTK+ L+ RVVD+QQV R + E+ L+ F D DP + K+
Sbjct: 2163 VTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKK 2208
Score = 158 (60.7 bits), Expect = 1.8e-140, Sum P(5) = 1.8e-140
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 493 CTAC----NNVAIE-VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDL 546
CTAC N+ + ++ HP L V++CK+C K + + +D+D + C WC +L
Sbjct: 170 CTACGQQVNHFQKDSIYRHPSLKVLICKNCFKYYMSDDIS-RDSDGMDEQCRWCAEGGNL 228
Query: 547 VSCKSCKTLFCTTCVKRNISEACLSDEV-QASCWQCCCCSPS-LLKRLTS 594
+ C C FC C+ RN+ LS + + + W C C P LL +T+
Sbjct: 229 ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQPEPLLDLVTA 278
Score = 64 (27.6 bits), Expect = 8.6e-48, Sum P(3) = 8.6e-48
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 498 NVAIEVHPHPILNVIVCKDCKC-LLEKKMHVKDADCSECYCVWCGRSSDLVS 548
N+ I++ PH + V DC C +EK + C +C+ G++ +VS
Sbjct: 1540 NMVIKLKPHQVDGVQFMWDCCCESVEKTKKSPGSGCILAHCMGLGKTLQVVS 1591
Score = 48 (22.0 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 22/97 (22%), Positives = 40/97 (41%)
Query: 286 NSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQKEI 345
+S D F+A ++E +LS +++KK + K + D++ S+ +
Sbjct: 1890 DSMDEFIASD-SDETSKSLSSDEKKKPKGKKGKKDSSSSGSGSDNDVEVIKVWNSRSR-- 1946
Query: 346 GSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGN 382
G D ++D+ P V S L KT P +
Sbjct: 1947 GGGDGNVDDTG--NNPSV--SLKLDESKTTSTSNPSS 1979
Score = 47 (21.6 bits), Expect = 1.8e-140, Sum P(5) = 1.8e-140
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 355 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 408
S+ E+ + + + N+ TD G N+++ N E G +S E+S S+G
Sbjct: 25 SSEESEETCSSPRLVMNQSTDKICGSGLNSDMMENNKEEG---ASTSEKSRSSG 75
Score = 47 (21.6 bits), Expect = 8.6e-48, Sum P(3) = 8.6e-48
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 300 KELALSEEQRKKFRKVKEEDDAN 322
K +A E +R+K R+V E +DA+
Sbjct: 1490 KRIAEREREREKLREVIEIEDAS 1512
Score = 44 (20.5 bits), Expect = 2.3e-128, Sum P(3) = 2.3e-128
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 297 ANEKELALSEEQRKKFRKVKEEDDANMD 324
A +E S +Q+KK R++K ++D++ +
Sbjct: 1397 AELEENQRSYKQKKKRRRIKVQEDSSSE 1424
Score = 42 (19.8 bits), Expect = 1.8e-140, Sum P(5) = 1.8e-140
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 643 ELGEETKRKIAIEKERQERLKSLQVQFSSK 672
+L ++ K+KI ++ E+ ++ +FS K
Sbjct: 288 QLLQQNKKKIKVDSEKTSKVCDQTSKFSPK 317
Score = 42 (19.8 bits), Expect = 2.3e-56, Sum P(5) = 2.3e-56
Identities = 21/86 (24%), Positives = 36/86 (41%)
Query: 879 CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFR 938
C E KN R + A KC+ R + S +NN+ D R + ++ R
Sbjct: 597 CQEVSQEKNGRKSSGVARSSEKCRPREEI--SDHENNVTILLEDSDLRRSPRVKTTPLRR 654
Query: 939 NRFQNP-IENG-QHTNSTSEDVKIMN 962
NP + N + +N T ++ + M+
Sbjct: 655 QTESNPAMSNSDEESNGTMKEKQKMS 680
Score = 41 (19.5 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 572 DEVQASCWQCCCCSPSLLKR 591
D VQ W CCC S K+
Sbjct: 1551 DGVQFM-WDCCCESVEKTKK 1569
Score = 38 (18.4 bits), Expect = 1.0e-127, Sum P(3) = 1.0e-127
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEE 318
D + E + AL EE+ ++ R + E
Sbjct: 1472 DKLRTETQNALKEEEERRKRIAERE 1496
Score = 38 (18.4 bits), Expect = 2.1e-44, Sum P(4) = 2.1e-44
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 858 KDRNMAREICHALQDGPDILVCDEAH 883
+D + E C +G +++ CD H
Sbjct: 210 RDSDGMDEQCRWCAEGGNLICCDFCH 235
Score = 37 (18.1 bits), Expect = 5.9e-140, Sum P(5) = 5.9e-140
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 639 LDDAELGEETKRKIAIEKERQER 661
L D E GEE K KE + R
Sbjct: 1334 LSDGESGEEKPTKPKEHKEAKGR 1356
>UNIPROTKB|P46100 [details] [associations]
symbol:ATRX "Transcriptional regulator ATRX" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=TAS] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0005720 "nuclear
heterochromatin" evidence=TAS] [GO:0006306 "DNA methylation"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070087 "chromo shadow domain binding" evidence=IPI]
[GO:0032508 "DNA duplex unwinding" evidence=TAS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005720 GO:GO:0030900 GO:GO:0003682
GO:GO:0006310 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0006306 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
DrugBank:DB00144 EMBL:CH471104 KO:K10779 EMBL:U72937 EMBL:U72938
EMBL:U72935 EMBL:U72904 EMBL:U72905 EMBL:U72907 EMBL:U72908
EMBL:U72909 EMBL:U72910 EMBL:U72911 EMBL:U72912 EMBL:U72913
EMBL:U72914 EMBL:U72915 EMBL:U72916 EMBL:U72917 EMBL:U72918
EMBL:U72919 EMBL:U72920 EMBL:U72921 EMBL:U72922 EMBL:U72923
EMBL:U72924 EMBL:U72925 EMBL:U72926 EMBL:U72927 EMBL:U72928
EMBL:U72929 EMBL:U72930 EMBL:U72931 EMBL:U72932 EMBL:U72933
EMBL:U72934 EMBL:U72936 EMBL:U75653 EMBL:U97103 EMBL:AF000157
EMBL:AF000158 EMBL:AF000159 EMBL:AF000160 EMBL:U97080 EMBL:U97081
EMBL:U97082 EMBL:U97083 EMBL:U97084 EMBL:U97085 EMBL:U97086
EMBL:U97087 EMBL:U97088 EMBL:U97089 EMBL:U97090 EMBL:U97091
EMBL:U97092 EMBL:U97093 EMBL:U97094 EMBL:U97095 EMBL:U97096
EMBL:U97097 EMBL:U97098 EMBL:U97099 EMBL:U97100 EMBL:U97101
EMBL:U97102 EMBL:AB102641 EMBL:AB101681 EMBL:AB101682 EMBL:AB101683
EMBL:AB101685 EMBL:AB101687 EMBL:AB101689 EMBL:AB101691
EMBL:AB101693 EMBL:AB101695 EMBL:AB101700 EMBL:AB101699
EMBL:AB101698 EMBL:AB101697 EMBL:AB101696 EMBL:AB101694
EMBL:AB101692 EMBL:AB101690 EMBL:AB101688 EMBL:AB101686
EMBL:AB101684 EMBL:AB208928 EMBL:AB209545 EMBL:AL121874
EMBL:AL109753 EMBL:Z84487 EMBL:U09820 EMBL:L34363 EMBL:X83753
IPI:IPI00220109 IPI:IPI00297633 IPI:IPI00845355 IPI:IPI00883721
IPI:IPI00938010 IPI:IPI00940810 PIR:I38614 PIR:I54367
RefSeq:NP_000480.2 RefSeq:NP_612114.1 UniGene:Hs.533526
UniGene:Hs.653797 PDB:2JM1 PDB:2LBM PDB:2LD1 PDB:3QL9 PDB:3QLA
PDB:3QLC PDB:3QLN PDBsum:2JM1 PDBsum:2LBM PDBsum:2LD1 PDBsum:3QL9
PDBsum:3QLA PDBsum:3QLC PDBsum:3QLN ProteinModelPortal:P46100
SMR:P46100 DIP:DIP-31532N IntAct:P46100 MINT:MINT-1186201
STRING:P46100 PhosphoSite:P46100 DMDM:311033500 PaxDb:P46100
PRIDE:P46100 DNASU:546 Ensembl:ENST00000373344
Ensembl:ENST00000395603 GeneID:546 KEGG:hsa:546 UCSC:uc004eco.4
UCSC:uc004ecq.4 UCSC:uc004ecr.2 CTD:546 GeneCards:GC0XM076760
H-InvDB:HIX0176765 HGNC:HGNC:886 HPA:CAB009372 HPA:HPA001906
MIM:300032 MIM:300448 MIM:301040 MIM:309580 neXtProt:NX_P46100
Orphanet:847 Orphanet:231401 Orphanet:93973 Orphanet:93971
Orphanet:93970 Orphanet:93972 Orphanet:93974 Orphanet:3423
PharmGKB:PA25179 HOVERGEN:HBG000104 InParanoid:P46100 OMA:GEGKWFR
OrthoDB:EOG4PVNXQ PhylomeDB:P46100 EvolutionaryTrace:P46100
GenomeRNAi:546 NextBio:2259 ArrayExpress:P46100 Bgee:P46100
CleanEx:HS_RAD54L Genevestigator:P46100 GermOnline:ENSG00000085224
InterPro:IPR025766 PROSITE:PS51533 Uniprot:P46100
Length = 2492
Score = 813 (291.2 bits), Expect = 4.9e-140, Sum P(5) = 4.9e-140
Identities = 176/428 (41%), Positives = 257/428 (60%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 1484 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1534
Query: 699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
T +++ E E V++ ++ KLK HQV G++FMW+ +S++K K G GCILA
Sbjct: 1535 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1593
Query: 759 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 816
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ + + L V
Sbjct: 1594 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEV 1653
Query: 817 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 874
L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D GP
Sbjct: 1654 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1713
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
D +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1714 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1773
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +
Sbjct: 1774 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1833
Query: 995 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 1051
V+ V+++ +Q +LY+ +LD L G N+ K F +Q L++IW HP LQL
Sbjct: 1834 VLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1893
Query: 1052 ---KDKGY 1056
++KGY
Sbjct: 1894 ISKENKGY 1901
Score = 540 (195.1 bits), Expect = 4.9e-140, Sum P(5) = 4.9e-140
Identities = 113/226 (50%), Positives = 153/226 (67%)
Query: 1100 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1159
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 2000 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 2059
Query: 1160 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1209
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 2060 EKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKA 2119
Query: 1210 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 1269
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R+GQTKPV+ YR +A GTME+KIY RQ
Sbjct: 2120 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQ 2179
Query: 1270 VTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKE 1315
VTK+ L+ RVVD+QQV R + E+ L+ F D DP + K+
Sbjct: 2180 VTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKK 2225
Score = 157 (60.3 bits), Expect = 4.9e-140, Sum P(5) = 4.9e-140
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 493 CTAC----NNVAIE-VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDL 546
CTAC N+ + ++ HP L V++CK+C K + + +D+D + C WC +L
Sbjct: 171 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDIS-RDSDGMDEQCRWCAEGGNL 229
Query: 547 VSCKSCKTLFCTTCVKRNISEACLSDEV-QASCWQCCCCSPS-LLKRLTS 594
+ C C FC C+ RN+ LS + + + W C C P LL +T+
Sbjct: 230 ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTA 279
Score = 60 (26.2 bits), Expect = 3.0e-47, Sum P(3) = 3.0e-47
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 498 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 548
N+ I++ PH + V DC C KK C +C+ G++ +VS
Sbjct: 1555 NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVS 1606
Score = 47 (21.6 bits), Expect = 3.0e-47, Sum P(3) = 3.0e-47
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 300 KELALSEEQRKKFRKVKEEDDAN 322
K +A E +R+K R+V E +DA+
Sbjct: 1505 KRIAEREREREKLREVIEIEDAS 1527
Score = 45 (20.9 bits), Expect = 4.9e-140, Sum P(5) = 4.9e-140
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 643 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMN 677
+L ++ K+KI ++ E+ ++ +FS K N
Sbjct: 289 QLLQQNKKKIKVDSEKSNKVYEHTSRFSPKKTSSN 323
Score = 44 (20.5 bits), Expect = 3.1e-128, Sum P(3) = 3.1e-128
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 297 ANEKELALSEEQRKKFRKVKEEDDANMD 324
A +E S +Q+KK R++K ++D++ +
Sbjct: 1410 AELEENQRSYKQKKKRRRIKVQEDSSSE 1437
Score = 43 (20.2 bits), Expect = 3.9e-128, Sum P(3) = 3.9e-128
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 297 ANEKELALSEEQRKKFRKVKEEDDANMD 324
+ E+E EE+ ++ + +EE+D N D
Sbjct: 1442 SEEEEEEKEEEEEEEEEEEEEEEDENDD 1469
Score = 42 (19.8 bits), Expect = 4.9e-140, Sum P(5) = 4.9e-140
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 355 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNG 408
S+ E+ + N+ TD G+N+++ + E G +S E+S S+G
Sbjct: 25 SSEESEETSSPPRLAMNQNTDKISGSGSNSDMMENSKEEG---TSSSEKSKSSG 75
Score = 42 (19.8 bits), Expect = 7.4e-45, Sum P(3) = 7.4e-45
Identities = 23/118 (19%), Positives = 51/118 (43%)
Query: 858 KDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLM 917
+D + E C +G +++ CD H A + + + ++ ++ +NN
Sbjct: 211 RDSDGMDEQCRWCAEGGNLICCDFCH-----NAFCKKCILRNLGRKELSTIMD--ENN-- 261
Query: 918 EYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGF 975
++YC + E L + F+N +E Q + +K+ +++S+ +YE F
Sbjct: 262 QWYCYICHP-EPLLDLVTACNSVFEN-LE--QLLQQNKKKIKVDSEKSNKVYEHTSRF 315
Score = 41 (19.5 bits), Expect = 6.3e-140, Sum P(5) = 6.3e-140
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 341 KQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKT-DDGDMPGNNNEVALQNLETGVL 396
K K GS + S V D K L ++ +D + N++ +Q+L G +
Sbjct: 70 KSKSSGSSRSKRKPSIVTKYVESDDEKPLDDETVNEDASNENSENDITMQSLPKGTV 126
Score = 41 (19.5 bits), Expect = 5.4e-56, Sum P(4) = 5.4e-56
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLS-AGASIEV 693
+ D E GEE K K KE +E V+ ++ K+ + + D D +G S EV
Sbjct: 1347 VSDGESGEEKKTK---PKEHKE------VKGRNRRKVSSEDSEDSDFQESGVSEEV 1393
Score = 41 (19.5 bits), Expect = 2.8e-45, Sum P(3) = 2.8e-45
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 572 DEVQASCWQCCCCSPSLLKR 591
D VQ W CCC S K+
Sbjct: 1566 DGVQFM-WDCCCESVKKTKK 1584
Score = 38 (18.4 bits), Expect = 2.7e-139, Sum P(5) = 2.7e-139
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 641 DAELGEETKRKIAIEKERQERLKS------LQVQFSSKSKL 675
D + G+ K I +K+RQ + +S L+ + S SK+
Sbjct: 791 DTKKGKSAKSSIISKKKRQTQSESSNYDSELEKEIKSMSKI 831
Score = 38 (18.4 bits), Expect = 1.3e-127, Sum P(3) = 1.3e-127
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEE 318
D + E + AL EE+ ++ R + E
Sbjct: 1487 DKLRTETQNALKEEEERRKRIAERE 1511
>ZFIN|ZDB-GENE-030912-11 [details] [associations]
symbol:atrx "alpha thalassemia/mental retardation
syndrome X-linked homolog (human)" species:7955 "Danio rerio"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 ZFIN:ZDB-GENE-030912-11 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
InterPro:IPR025766 PROSITE:PS51533 EMBL:CR931764 EMBL:CR855117
IPI:IPI00899757 Ensembl:ENSDART00000127594 Uniprot:E7F4M2
Length = 2011
Score = 803 (287.7 bits), Expect = 2.4e-139, Sum P(3) = 2.4e-139
Identities = 171/427 (40%), Positives = 256/427 (59%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
+ D +L ET+ + KE ++R K + + + KL ++ + S +V
Sbjct: 1038 IKDDKLRTETRDAL---KEEEDRRKRIAERERLREKLRETIEVK------ESSQVTCPIT 1088
Query: 699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
T +++ E E V++ ++ KLK HQV G++FMW+ +S+RKV+ G GCILA
Sbjct: 1089 TKLVLDEDEETKEPLVQVHRNMVTKLKPHQVDGVQFMWDCCCESVRKVEKS-AGSGCILA 1147
Query: 759 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 816
H MGLGKT QV+ L+T + L TAL+V P+N + NW EF KW+ + + L V
Sbjct: 1148 HCMGLGKTLQVVTLLHTVLLCEKLNFSTALVVCPLNTVLNWLNEFEKWQEGLKDEESLEV 1207
Query: 817 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPD 875
L V R + RA L +W+ GGV ++GY +RNL+ G+++K + + L D PD
Sbjct: 1208 TELATVKRPQERAYALQRWQEDGGVMIMGYEMYRNLTQGRNIKSKKLKETFQKTLVD-PD 1266
Query: 876 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++CDE H++KN + ++A+ +K +RR+ LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 1267 FVICDEGHVLKNEASAVSKAMNSIKTRRRVVLTGTPLQNNLIEYHCMVNFIKENLLGSVK 1326
Query: 936 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 995
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK +V
Sbjct: 1327 EFRNRFINPIQNGQCADSTLVDVRVMKKRAHILYEMLAGCVQRRDYTALTKFLPPKHEYV 1386
Query: 996 ITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKS--FFAGYQALAQIWNHPGILQLT-- 1051
+ V+LSP+Q +LY+ +LD + + K R F +Q L++IW HP LQL
Sbjct: 1387 LAVRLSPIQCKLYRYYLDHFTGVGSALESGKGRAGTKLFQDFQMLSRIWTHPWCLQLDYI 1446
Query: 1052 --KDKGY 1056
++KGY
Sbjct: 1447 SKENKGY 1453
Score = 524 (189.5 bits), Expect = 2.4e-139, Sum P(3) = 2.4e-139
Identities = 109/223 (48%), Positives = 146/223 (65%)
Query: 1100 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1159
+W+ + + E + L +SGKMVLL +IL + + DK LVFSQS+ +LDLIE +L R
Sbjct: 1543 EWYKEFVSEEDAEVLTHSGKMVLLFEILRLAEEVDDKVLVFSQSLISLDLIEDFLELAGR 1602
Query: 1160 PGKQGK--------LWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGS 1211
++GK W + D+YRLDG T + R+K E FN+ N R + LISTRAGS
Sbjct: 1603 AKEEGKESPYKGEGKWFRNIDYYRLDGSTNALTRKKWAEDFNDISNVRGRLFLISTRAGS 1662
Query: 1212 LGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVT 1271
LGINL +ANRVII D SWNP+YD+Q+I+R +R+GQ K V+ YR +A GTMEEKIY RQV
Sbjct: 1663 LGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQVKTVYVYRFLAQGTMEEKIYDRQVA 1722
Query: 1272 KEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSK 1314
K+ L+ RVVD+QQ+ R + E+ L+ F D+ DP SK
Sbjct: 1723 KQSLSFRVVDQQQIERHFTMNELTELYTFEPDQLDDPSEKKSK 1765
Score = 172 (65.6 bits), Expect = 2.4e-139, Sum P(3) = 2.4e-139
Identities = 46/150 (30%), Positives = 67/150 (44%)
Query: 454 VVKDE-CSTKLEDHSVSPE--NINDAATDNSLHSQ---SLSEKFYCTAC----NNVAIE- 502
VVK E + + +D PE N A + + L E F CTAC N+ +
Sbjct: 77 VVKPEPVANETKDEFRGPEFRNKGGKAKEEGARKRPDDQLQEIFNCTACGQQVNHFQKDS 136
Query: 503 VHPHPILNVIVCKDC-KCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCV 561
+ HP L+V++CK C K + + D E C WC +L+ C C FC C+
Sbjct: 137 IFQHPALHVLICKSCFKYYMSDDISKDDEGMDE-QCRWCAEGGNLMCCDYCSNAFCKKCI 195
Query: 562 KRNISEACLSDEV-QASCWQCCCCSPSLLK 590
RN+ LS+ + + S W C C P L+
Sbjct: 196 LRNLGRKELSEIMSEQSKWHCYICCPEPLQ 225
Score = 56 (24.8 bits), Expect = 5.6e-45, Sum P(3) = 5.6e-45
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 498 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVK-DADCSECYCVWCGRSSDLVSCKSCKTLF 556
N+ ++ PH + V DC C +K+ + C +C+ G++ +V+ L
Sbjct: 1109 NMVTKLKPHQVDGVQFMWDCCCESVRKVEKSAGSGCILAHCMGLGKTLQVVTLLHTVLL- 1167
Query: 557 CTTCVKRNISEA 568
C K N S A
Sbjct: 1168 ---CEKLNFSTA 1176
Score = 43 (20.2 bits), Expect = 9.2e-126, Sum P(3) = 9.2e-126
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 455 VKDECSTKLEDHSVSPENINDAATDNSLHSQSL----SEKFYCTACNNVAIEVHPHPILN 510
V +E +E +V EN +D TD+S + + S+K + +++ P P L
Sbjct: 493 VPEELFEMVESLAVKKENNDDNLTDSSDNKSNTEVVESKKSLTKLGKKLVVKLTPVP-LK 551
Query: 511 VIVCKD 516
+ + +D
Sbjct: 552 ITIKRD 557
Score = 42 (19.8 bits), Expect = 1.2e-125, Sum P(3) = 1.2e-125
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 298 NEKELALSEEQRKKFRKVKEEDDANMD 324
++++L +S+ K VKE+ D++ D
Sbjct: 598 SKRKLNMSKADEKSSDAVKEQSDSDSD 624
Score = 42 (19.8 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 339 ISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDM 379
I+ + E S+ T ED + + K S+ K+D D+
Sbjct: 1463 IASETEESSMSLTSEDEKPKRKKKRGRGKDQSSDKSDSDDL 1503
Score = 41 (19.5 bits), Expect = 1.5e-125, Sum P(3) = 1.5e-125
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 285 GNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 324
G SD+ +A+ N+KE +++ RKV +D A+ D
Sbjct: 914 GESDEE---NAVKNKKET-----KKRGRRKVDSDDSADSD 945
Score = 40 (19.1 bits), Expect = 1.9e-125, Sum P(3) = 1.9e-125
Identities = 7/26 (26%), Positives = 19/26 (73%)
Query: 297 ANEKELALSEEQRKKFRKVKEEDDAN 322
A +KE + +E++K+ R++K ++ ++
Sbjct: 984 AKDKERSYKKEKKKR-RRIKVQESSS 1008
Score = 39 (18.8 bits), Expect = 2.6e-43, Sum P(3) = 2.6e-43
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 572 DEVQASCWQCCC 583
D VQ W CCC
Sbjct: 1120 DGVQFM-WDCCC 1130
>UNIPROTKB|F1RPI9 [details] [associations]
symbol:LOC100514440 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:CU928419
EMBL:CU693469 EMBL:CU928840 EMBL:FP102832
Ensembl:ENSSSCT00000013595 OMA:GPDIVIC ArrayExpress:F1RPI9
Uniprot:F1RPI9
Length = 988
Score = 816 (292.3 bits), Expect = 5.7e-138, Sum P(3) = 5.7e-138
Identities = 177/429 (41%), Positives = 257/429 (59%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
L D +L ET+ + KE +ER K + + + KL + ++ I
Sbjct: 203 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 253
Query: 699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
T +++ E E V++ ++ KLK HQV G++FMW+ +S++K K G GCILA
Sbjct: 254 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 312
Query: 759 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS---ELKPLR 815
H MGLGKT QV++FL+T + L TAL+V P+N NW EF KW+ + K +
Sbjct: 313 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEK 372
Query: 816 VFMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-G 873
V L V R + R+ +L +W+ GGV +IGY +RNL+ G++VK R + AL D G
Sbjct: 373 VSELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPG 432
Query: 874 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGS 933
PD +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 433 PDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGS 492
Query: 934 SHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 993
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK
Sbjct: 493 IKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHE 552
Query: 994 FVITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT 1051
+V+ V+++P+Q +LY+ +LD L G N K F +Q L++IW HP LQL
Sbjct: 553 YVLAVRMTPIQCKLYQYYLDHLTGVGNSSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLD 612
Query: 1052 ----KDKGY 1056
++KGY
Sbjct: 613 YISKENKGY 621
Score = 540 (195.1 bits), Expect = 5.7e-138, Sum P(3) = 5.7e-138
Identities = 113/226 (50%), Positives = 153/226 (67%)
Query: 1100 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1159
DW+ D + + + L++SGKMVLL +IL M +GDK LVFSQS+ +LDLIE +L R
Sbjct: 721 DWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASR 780
Query: 1160 PGKQGK----LWK-KGK-----DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1209
+ K ++K +GK D+YRLDG T + R+K E FN+ N R + +IST+A
Sbjct: 781 EKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKA 840
Query: 1210 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 1269
GSLGINL +ANRVII D SWNP+YD+Q+I+R +R+GQTKPV+ YR +A GTME+KIY RQ
Sbjct: 841 GSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQ 900
Query: 1270 VTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKE 1315
VTK+ L+ RVVD+QQV R + E+ L+ F D DP + K+
Sbjct: 901 VTKQSLSFRVVDQQQVERHFTMNELTELYTFEPDLLDDPNSEKKKK 946
Score = 60 (26.2 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 498 NVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDAD-CSECYCVWCGRSSDLVS 548
N+ I++ PH + V DC C KK C +C+ G++ +VS
Sbjct: 274 NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVS 325
Score = 47 (21.6 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 300 KELALSEEQRKKFRKVKEEDDAN 322
K +A E +R+K R+V E +DA+
Sbjct: 224 KRIAEREREREKLREVIEIEDAS 246
Score = 44 (20.5 bits), Expect = 5.7e-138, Sum P(3) = 5.7e-138
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 297 ANEKELALSEEQRKKFRKVKEEDDANMD 324
A +E S +Q+KK R++K ++D++ +
Sbjct: 136 AELEENQRSYKQKKKRRRIKVQEDSSSE 163
Score = 41 (19.5 bits), Expect = 9.6e-48, Sum P(3) = 9.6e-48
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 572 DEVQASCWQCCCCSPSLLKR 591
D VQ W CCC S K+
Sbjct: 285 DGVQFM-WDCCCESVKKTKK 303
Score = 38 (18.4 bits), Expect = 2.4e-137, Sum P(3) = 2.4e-137
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEE 318
D + E + AL EE+ ++ R + E
Sbjct: 206 DKLRTETQNALKEEEERRKRIAERE 230
Score = 38 (18.4 bits), Expect = 2.4e-137, Sum P(3) = 2.4e-137
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 292 VADAIANEKELALSEEQRKKFRKVKEEDDANMD 324
V + ++E + EE +++ + +EE+D N D
Sbjct: 156 VQEDSSSENKSHSEEEDKEEEDEEEEEEDENDD 188
Score = 37 (18.1 bits), Expect = 3.1e-137, Sum P(3) = 3.1e-137
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 639 LDDAELGEETKRKIAIEKERQER 661
+ D E GE+ K K KE + R
Sbjct: 73 VSDGESGEDKKTKPKEHKEAKGR 95
>ZFIN|ZDB-GENE-030131-3097 [details] [associations]
symbol:rad54l2 "RAD54-like 2 (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-3097 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
CTD:23132 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX465868
IPI:IPI00481713 RefSeq:XP_687332.3 UniGene:Dr.141427
UniGene:Dr.159400 UniGene:Dr.1755 Ensembl:ENSDART00000091716
Ensembl:ENSDART00000147975 GeneID:558947 KEGG:dre:558947
NextBio:20882710 Uniprot:F1R3L6
Length = 1437
Score = 851 (304.6 bits), Expect = 2.3e-109, Sum P(4) = 2.3e-109
Identities = 203/521 (38%), Positives = 293/521 (56%)
Query: 858 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 916
+ + + + I AL + GPD+++CDE H IKN A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 450 RQQELMKAIERALSRPGPDVVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNL 509
Query: 917 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 976
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 510 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVQLMRYRSHVLHSLLEGFV 569
Query: 977 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 1036
QR +V++ LPPK VI V+LS LQR LY F++ + ++ + + +
Sbjct: 570 QRRGHDVLRHQLPPKEEHVILVRLSRLQRALYTEFMNRF---REAGNSGWLGLNPLKAFC 626
Query: 1037 ALAQIWNHPGILQ--LTKDKGYPSRXXXXXXXXXXNMDYNVVIGEKP--------RNMN- 1085
+IWNHP +L L K+ + + G K R M+
Sbjct: 627 VCCKIWNHPDVLYEALQKENLANEQDLDLDDLNSSSGTRCSAPGIKSKTSDAANSRQMSV 686
Query: 1086 ---DFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQ 1142
+ LQ K + +W +++ + L+ S KMVLL ++ GDK LVFSQ
Sbjct: 687 GHLNPLQEKANQ-VITYEWAKEVMTNYQTGVLENSAKMVLLFYLIDETVARGDKILVFSQ 745
Query: 1143 SIPTLDLIEFYLSKLPRP--GKQGKL-WKKGKDWYRLDGRTESSERQKLVERFNEPLNKR 1199
S+ TL +IE +LS+ P P + G W + ++YRLDG T +SER++L+ +FN+P N +
Sbjct: 746 SLSTLTVIEDFLSRRPMPIQTETGTHNWVRNINYYRLDGSTSASERERLINQFNDPANTQ 805
Query: 1200 VKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 1259
L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +RYGQ KP YRL+
Sbjct: 806 AWVFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQRKPCHIYRLVCDF 865
Query: 1260 TMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQG 1319
T+E+KIY RQV+K+G++ RVVD +++E+ L F ++E PDP + N
Sbjct: 866 TLEKKIYDRQVSKQGMSDRVVDDLNPVLNFTRKEVESLLHFVEEE-PDP-AELQPNNEME 923
Query: 1320 SSQNTNCAL-KHKL---PLSHEGCSDKLMESLLGKHHPRCA 1356
+ C + H L P HE E L K R A
Sbjct: 924 TVIQQACVMYPHLLTKPPFHHESLLMDRKEMKLTKAEKRAA 964
Score = 285 (105.4 bits), Expect = 2.3e-109, Sum P(4) = 2.3e-109
Identities = 71/207 (34%), Positives = 115/207 (55%)
Query: 667 VQFSSKSKLMNSVTLDGDLSAGASI-EVLG--DAITGYIVNVVREKGEEAVRIPSSISAK 723
++ SS+ + S+T + S+G+ I + L D+ ++N+ EE + + ++
Sbjct: 221 LRISSEEEEDRSLTPGTEESSGSHINDSLNQPDSQGRVLININHPAEEEDLFLAPQLARA 280
Query: 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG 783
+K HQ+ GIRF+++N+++S+ + K+ G GCILAH+MGLGKT QVI+F+ +R + G
Sbjct: 281 VKPHQIGGIRFLYDNLVESLERYKTSS-GFGCILAHSMGLGKTLQVISFIDVLLR--HTG 337
Query: 784 LRTALIVTPVNVLHNWKQEFMKWRPSE--LKP-----------LRVFMLEDVSRDR--RA 828
+T L + PVN L NW EF W P+ L P +V +L D + RA
Sbjct: 338 AKTVLAIVPVNTLQNWLAEFNLWLPAAEALPPDTDPQQVLPRTFKVHILNDEHKTTVARA 397
Query: 829 ELLAKWRAKGGVFLIGYTAFRNLSFGK 855
+++ W GGV L+GY +R LS K
Sbjct: 398 KVVEDWTGDGGVLLMGYEMYRLLSLKK 424
Score = 50 (22.7 bits), Expect = 2.3e-109, Sum P(4) = 2.3e-109
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 93 QALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLL-EQLDGAGIELPSL 143
+A+ G DLE ++ E +E+ E +DE E E + + AG +L SL
Sbjct: 4 EAISGSDLEPSLNSE----EEEEEEEMDEEEEEDGENDGDDEEDAGDQLESL 51
Score = 39 (18.8 bits), Expect = 2.3e-109, Sum P(4) = 2.3e-109
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 675
L + +L TK E ER+ RL+ + +FS + L
Sbjct: 135 LTENQLEAGTKAAQQEELERRRRLEQQRKEFSLHADL 171
Score = 39 (18.8 bits), Expect = 3.3e-108, Sum P(4) = 3.3e-108
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 364 DASKSLSNKKTDDGDMPGNNNEVALQNLETGVLE 397
+ + + ++ +DG+ G++ E A LE+ +E
Sbjct: 21 EEEEEMDEEEEEDGENDGDDEEDAGDQLESLEME 54
>UNIPROTKB|E1C963 [details] [associations]
symbol:RAD54L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:AADN02056475
EMBL:AADN02056476 EMBL:AADN02056477 IPI:IPI00581654
Ensembl:ENSGALT00000005129 OMA:THMRKNI Uniprot:E1C963
Length = 1148
Score = 469 (170.2 bits), Expect = 1.7e-108, Sum P(3) = 1.7e-108
Identities = 106/267 (39%), Positives = 156/267 (58%)
Query: 1100 DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1159
+W D+L ++ L+ S KMVLL ++ +GDK LVFSQS+ TL +IE +L+K P
Sbjct: 715 EWAKDILCDYQTGVLENSPKMVLLFHLVEESVKLGDKILVFSQSLSTLSVIEEFLAKRPM 774
Query: 1160 P---GKQGKL--WKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGI 1214
P G G + W + +YRLDG T +SER++L+ +FN+P N V L+STRAG LG+
Sbjct: 775 PNPPGSDGGVHNWVRNISYYRLDGSTSASERERLINQFNDPSNASVWLFLLSTRAGCLGV 834
Query: 1215 NLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEG 1274
NL ANRV++ D SWNP +D QA+ R +RYGQ KP YRL++ T+E+KIY RQ++K+G
Sbjct: 835 NLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCHIYRLVSDYTLEKKIYDRQISKQG 894
Query: 1275 LAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKH---- 1330
++ RVVD ++ E+ +L F ++E+ +++ + S C LK+
Sbjct: 895 MSDRVVDDLNPVLNFTRREVENLLHFVEEESDLAQLSLNPSKMKESVLQLAC-LKYPHLI 953
Query: 1331 -KLPLSHEGCSDKLMESLLGKHHPRCA 1356
K P HE E L K + A
Sbjct: 954 TKEPFQHESLLIDRKEHKLTKAEKKAA 980
Score = 440 (159.9 bits), Expect = 1.7e-108, Sum P(3) = 1.7e-108
Identities = 90/195 (46%), Positives = 126/195 (64%)
Query: 858 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 916
+ + + + I AL + GPD+++CDE H IKN A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 449 RQQELLKGIEKALSRPGPDVVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNL 508
Query: 917 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 976
+EY+CMVDFVR FLGS EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 509 IEYWCMVDFVRPDFLGSRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 568
Query: 977 QRMDM---NVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFA 1033
QR+ NV+K LP K VI V+LS +QR LY F++ D ++ + +
Sbjct: 569 QRLPRRGHNVLKVQLPSKEEHVILVRLSKIQRALYTEFMNRF---RDAGNSGWLGLNPLK 625
Query: 1034 GYQALAQIWNHPGIL 1048
+ +IWNHP +L
Sbjct: 626 AFCVCCKIWNHPDVL 640
Score = 309 (113.8 bits), Expect = 1.7e-108, Sum P(3) = 1.7e-108
Identities = 94/268 (35%), Positives = 138/268 (51%)
Query: 639 LDDAELGEE--TKRKIAIEKERQERLK----SLQVQFSSKSKLMNSVTLDG-DLSAGASI 691
LD G E TK K +I+ E E +LQ+ SS S N DG + S+G+ +
Sbjct: 187 LDSTSSGSEDDTKGKNSIKDEVIELSSGEDDALQIVDSSDSG--NEGEEDGSEESSGSHV 244
Query: 692 -EVLG--DAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKS 748
+ L DA+ IVN+ EE + + ++ +K HQ+ GIRF+++N+++S+ + K+
Sbjct: 245 NDALNQSDALGQVIVNINHPPNEEDIFLAPQLAHAVKPHQIGGIRFLYDNLVESLERFKT 304
Query: 749 GDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
G GCILAH+MGLGKT QVI+FL R +T L + PVN L NW EF W P
Sbjct: 305 SS-GFGCILAHSMGLGKTIQVISFLDVLFRHTEA--KTVLAIVPVNTLQNWLAEFNMWLP 361
Query: 809 S-----------ELKP--LRVFMLEDVSRDR--RAELLAKWRAKGGVFLIGYTAFRNLSF 853
+ E++P +V +L D + RA+++ W +GGV L+GY +R LS
Sbjct: 362 APENLPPDYNSKEVQPRTFKVHILNDEHKTTAARAKVVNDWVVEGGVLLMGYEMYRLLSL 421
Query: 854 GKHVKDRNMAREICHALQDGPDILVCDE 881
K R+ Q GP I+ DE
Sbjct: 422 KKSFAT---GRKKKTKKQTGPVIIDLDE 446
Score = 42 (19.8 bits), Expect = 2.0e-80, Sum P(3) = 2.0e-80
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 82 KLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHL---LEQLDGAG 137
K KN +++E+ + G+D + D E E +E + +H+ L Q D G
Sbjct: 199 KGKNSIKDEVIELSSGEDDALQIVDSSDSGNEGEEDGSEE--SSGSHVNDALNQSDALG 255
>FB|FBgn0039338 [details] [associations]
symbol:XNP "XNP" species:7227 "Drosophila melanogaster"
[GO:0003678 "DNA helicase activity" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IMP] [GO:0008347
"glial cell migration" evidence=IMP] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0006917 "induction of apoptosis"
evidence=IMP] [GO:0046328 "regulation of JNK cascade" evidence=IGI]
[GO:0005700 "polytene chromosome" evidence=IDA] [GO:0000775
"chromosome, centromeric region" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0005722 "beta-heterochromatin"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0006336 "DNA
replication-independent nucleosome assembly" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0006917 GO:GO:0003677
GO:GO:0006281 GO:GO:0016887 GO:GO:0004386 GO:GO:0070868
GO:GO:0046328 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008347 KO:K10779 EMBL:AF217802 EMBL:AY058592
RefSeq:NP_651398.1 RefSeq:NP_733107.1 UniGene:Dm.1935
ProteinModelPortal:Q9GQN5 SMR:Q9GQN5 STRING:Q9GQN5 PaxDb:Q9GQN5
EnsemblMetazoa:FBtr0084837 EnsemblMetazoa:FBtr0084838 GeneID:43080
KEGG:dme:Dmel_CG4548 UCSC:CG4548-RA CTD:43080 FlyBase:FBgn0039338
GeneTree:ENSGT00550000074619 InParanoid:Q9GQN5 OMA:KQEYVIN
OrthoDB:EOG4ZW3S5 PhylomeDB:Q9GQN5 GenomeRNAi:43080 NextBio:832107
Bgee:Q9GQN5 GermOnline:CG4548 GO:GO:0005722 Uniprot:Q9GQN5
Length = 1311
Score = 676 (243.0 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 149/409 (36%), Positives = 241/409 (58%)
Query: 656 KERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVR 715
KE +R K ++ + KL N + + + S+E I +++ E + ++
Sbjct: 401 KEEDDRRKRIE----DRQKLYNRIFVKSE-----SVE-----INELVLDFDEESKKALLQ 446
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDK-GLGCILAHTMGLGKTFQVIAFLY 774
+ + KLK HQV G++FMW+ +++++ S +K G GCILAH MGLGKT QV+ +
Sbjct: 447 VDKGLLKKLKPHQVAGVKFMWDACFETLKE--SQEKPGSGCILAHCMGLGKTLQVVTLSH 504
Query: 775 TAMRSVN-LGLRTALIVTPVNVLHNWKQEFMKWRP-SELKPLRVFMLEDVSR--DRRAEL 830
T + + G+ LI++P++ ++NW +EF W + + V+ D+SR D+ +
Sbjct: 505 TLLVNTRRTGVDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVY---DISRYKDKPTRI 561
Query: 831 --LAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMARE-ICHALQD-GPDILVCDEAHMIK 886
L +W +GGV ++GY +R L+ K R RE + AL D GPD++VCDE H++K
Sbjct: 562 FKLNEWFNEGGVCILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLK 621
Query: 887 NTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIE 946
N + ++A+ +++ +RRI LTG+PLQNNL EYYCM+ FV+ LG+ E+ NRF NPI
Sbjct: 622 NEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPIT 681
Query: 947 NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRR 1006
NGQ+T+ST D+++M RSHIL++ L+G +QR D +V+ LPPK +V+ LS LQ++
Sbjct: 682 NGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQK 741
Query: 1007 LYKRFLDLHGFTNDRVSNEKIRKS--FFAGYQALAQIWNHPGILQLTKD 1053
LY ++ H ++ + + K F +Q L +IW HP L++ D
Sbjct: 742 LYGYYMTTH---REQSGGDVVGKGARLFQDFQDLRRIWTHPMNLRVNSD 787
Score = 483 (175.1 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 97/229 (42%), Positives = 144/229 (62%)
Query: 1086 DFLQGKNDDGFFQKD----WWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFS 1141
+ L G QKD WW + E + +S K+++LL +L C +GDK LVFS
Sbjct: 862 EMLGGLGGGSSVQKDDPSEWWKPFVEERELNNVHHSPKLLILLRLLQQCEAIGDKLLVFS 921
Query: 1142 QSIPTLDLIEFYLSKLPRPGK----QGKL------WKKGKDWYRLDGRTESSERQKLVER 1191
QS+ +LD+IE +LS + K +G + W GKD++RLDG +R+ + ++
Sbjct: 922 QSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQ 981
Query: 1192 FNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVF 1251
FN N R + LISTRAG LGINL +ANRV+I D SWNP++D Q+I+R +R+GQ KP +
Sbjct: 982 FNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCY 1041
Query: 1252 AYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEF 1300
YRL+A GTME+K+Y+RQV K+ A RV+D QQ+ R ++ +++ L+ +
Sbjct: 1042 IYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQISRHYNQTDLMELYSY 1090
Score = 41 (19.5 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 204 ASGFLQKKIANDGSENGGKEVSDI 227
+SG ++K+ +G+ GG SD+
Sbjct: 838 SSGKVKKRKTRNGNAGGGDSDSDL 861
Score = 39 (18.8 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 298 NEKELALSEE-----QRKKFRKVKEEDDANMD 324
+E+E A S + QRK+ RK E D + D
Sbjct: 313 DEEEAANSSDSEVMPQRKRRRKKSESDKGSSD 344
Score = 38 (18.4 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 83 LKNEVREELAQALHGDDLEAAVEDEMTVYKEQ 114
L+ + RE+L QAL + V DE + K +
Sbjct: 592 LRKKQREQLMQALVDPGPDLVVCDEGHLLKNE 623
>UNIPROTKB|H0Y760 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AC099050 EMBL:AC113933 HGNC:HGNC:29123
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC092037
ProteinModelPortal:H0Y760 Ensembl:ENST00000432863 Uniprot:H0Y760
Length = 1296
Score = 462 (167.7 bits), Expect = 4.0e-106, Sum P(3) = 4.0e-106
Identities = 109/269 (40%), Positives = 160/269 (59%)
Query: 1087 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 1139
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 512 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 571
Query: 1140 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1193
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 572 FSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFN 631
Query: 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 1253
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +RYGQ KP + Y
Sbjct: 632 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIY 691
Query: 1254 RLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS 1313
RL+A T+E+KIY RQ++K+G++ RVVD +++E+ +L F + E P P +++
Sbjct: 692 RLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLLHFVEKE-PAPQVSLN 750
Query: 1314 KENGQGSSQNTNCALKH-----KLPLSHE 1337
+ + S C LK+ K P HE
Sbjct: 751 VKGIKESVLQLAC-LKYPHLITKEPFEHE 778
Score = 447 (162.4 bits), Expect = 4.0e-106, Sum P(3) = 4.0e-106
Identities = 91/192 (47%), Positives = 125/192 (65%)
Query: 858 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 916
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 269 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 328
Query: 917 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 976
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 329 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 388
Query: 977 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 1036
QR V+K LP K VI V+LS +QR LY +F+D D S+ + + +
Sbjct: 389 QRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRF---RDCGSSGWLGLNPLKAFC 445
Query: 1037 ALAQIWNHPGIL 1048
+IWNHP +L
Sbjct: 446 VCCKIWNHPDVL 457
Score = 290 (107.1 bits), Expect = 4.0e-106, Sum P(3) = 4.0e-106
Identities = 65/175 (37%), Positives = 102/175 (58%)
Query: 696 DAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGC 755
DA+ +VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GC
Sbjct: 72 DALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGC 130
Query: 756 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW--------- 806
ILAH+MGLGKT QVI+F+ R + +T L + PVN L NW EF W
Sbjct: 131 ILAHSMGLGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPA 188
Query: 807 --RPSELKP--LRVFMLEDVSRDR--RAELLAKWRAKGGVFLIGYTAFRNLSFGK 855
+P E++P +V +L D + RA+++A W ++GGV L+GY +R L+ K
Sbjct: 189 DNKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKK 243
Score = 37 (18.1 bits), Expect = 4.4e-63, Sum P(3) = 4.4e-63
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1027 IRKSFFAGYQALAQIWNHPGILQLTKD 1053
++KSF G + +HP I+ L ++
Sbjct: 241 LKKSFATGRPKKTKKRSHPVIIDLDEE 267
>RGD|1310600 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006974 "response to
DNA damage stimulus" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=ISO]
[GO:0051276 "chromosome organization" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1310600 RGD:1561889 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CH473954 GO:GO:0004386
GO:GO:0003712 CTD:23132 KO:K10876 OrthoDB:EOG4X6C7G
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00196576 RefSeq:NP_001127992.1
UniGene:Rn.52847 Ensembl:ENSRNOT00000018475 GeneID:363135
KEGG:rno:363135 NextBio:682567 Uniprot:D3ZV87
Length = 1299
Score = 467 (169.5 bits), Expect = 4.9e-106, Sum P(3) = 4.9e-106
Identities = 110/269 (40%), Positives = 160/269 (59%)
Query: 1087 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 1139
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 682 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 741
Query: 1140 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1193
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 742 FSQSLSTLALIEEFLGKRDMPCPPGAEGQGAQKWVRNVSYFRLDGSTPAFERERLINQFN 801
Query: 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 1253
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +RYGQ KP + Y
Sbjct: 802 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIY 861
Query: 1254 RLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS 1313
RL+A T+E+KIY RQ++K+G++ RVVD +++E+ +L F + E P P T++
Sbjct: 862 RLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLLHFVEKE-PAPQTSLD 920
Query: 1314 KENGQGSSQNTNCALKH-----KLPLSHE 1337
+ + S C LK+ K P HE
Sbjct: 921 IKGIKESVLQLAC-LKYPHLITKEPFEHE 948
Score = 447 (162.4 bits), Expect = 4.9e-106, Sum P(3) = 4.9e-106
Identities = 91/192 (47%), Positives = 125/192 (65%)
Query: 858 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 916
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 439 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 498
Query: 917 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 976
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 499 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 558
Query: 977 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 1036
QR V+K LP K VI V+LS +QR LY +F+D D S+ + + +
Sbjct: 559 QRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFMDRF---RDCGSSGWLGLNPLKAFC 615
Query: 1037 ALAQIWNHPGIL 1048
+IWNHP +L
Sbjct: 616 VCCKIWNHPDVL 627
Score = 284 (105.0 bits), Expect = 4.9e-106, Sum P(3) = 4.9e-106
Identities = 64/175 (36%), Positives = 100/175 (57%)
Query: 696 DAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGC 755
DA+ +VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GC
Sbjct: 242 DALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGC 300
Query: 756 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW--------- 806
ILAH+MGLGKT QVI+F+ R + +T L + PVN L NW EF W
Sbjct: 301 ILAHSMGLGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPAPEALPA 358
Query: 807 --RPSELKP--LRVFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGK 855
+P E++P +V +L D + RA++ W ++GGV L+GY +R L+ K
Sbjct: 359 DSKPEEIQPRFFKVHILNDEHKTVASRAKVTTDWVSEGGVLLMGYEMYRLLTLKK 413
>RGD|1561889 [details] [associations]
symbol:Rad54l2 "Rad54 like 2 (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0019901 "protein kinase binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1310600 RGD:1561889 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CH473954 GO:GO:0004386
GO:GO:0003712 CTD:23132 KO:K10876 OrthoDB:EOG4X6C7G
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00196576 RefSeq:NP_001127992.1
UniGene:Rn.52847 Ensembl:ENSRNOT00000018475 GeneID:363135
KEGG:rno:363135 NextBio:682567 Uniprot:D3ZV87
Length = 1299
Score = 467 (169.5 bits), Expect = 4.9e-106, Sum P(3) = 4.9e-106
Identities = 110/269 (40%), Positives = 160/269 (59%)
Query: 1087 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 1139
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 682 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 741
Query: 1140 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1193
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 742 FSQSLSTLALIEEFLGKRDMPCPPGAEGQGAQKWVRNVSYFRLDGSTPAFERERLINQFN 801
Query: 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 1253
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +RYGQ KP + Y
Sbjct: 802 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIY 861
Query: 1254 RLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS 1313
RL+A T+E+KIY RQ++K+G++ RVVD +++E+ +L F + E P P T++
Sbjct: 862 RLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLLHFVEKE-PAPQTSLD 920
Query: 1314 KENGQGSSQNTNCALKH-----KLPLSHE 1337
+ + S C LK+ K P HE
Sbjct: 921 IKGIKESVLQLAC-LKYPHLITKEPFEHE 948
Score = 447 (162.4 bits), Expect = 4.9e-106, Sum P(3) = 4.9e-106
Identities = 91/192 (47%), Positives = 125/192 (65%)
Query: 858 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 916
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 439 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 498
Query: 917 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 976
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 499 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 558
Query: 977 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 1036
QR V+K LP K VI V+LS +QR LY +F+D D S+ + + +
Sbjct: 559 QRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFMDRF---RDCGSSGWLGLNPLKAFC 615
Query: 1037 ALAQIWNHPGIL 1048
+IWNHP +L
Sbjct: 616 VCCKIWNHPDVL 627
Score = 284 (105.0 bits), Expect = 4.9e-106, Sum P(3) = 4.9e-106
Identities = 64/175 (36%), Positives = 100/175 (57%)
Query: 696 DAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGC 755
DA+ +VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GC
Sbjct: 242 DALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGC 300
Query: 756 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW--------- 806
ILAH+MGLGKT QVI+F+ R + +T L + PVN L NW EF W
Sbjct: 301 ILAHSMGLGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPAPEALPA 358
Query: 807 --RPSELKP--LRVFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGK 855
+P E++P +V +L D + RA++ W ++GGV L+GY +R L+ K
Sbjct: 359 DSKPEEIQPRFFKVHILNDEHKTVASRAKVTTDWVSEGGVLLMGYEMYRLLTLKK 413
>UNIPROTKB|Q9Y4B4 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
GO:GO:0003712 EMBL:AC099050 EMBL:AC113933 EMBL:AB018352
EMBL:BC001474 EMBL:BC024298 IPI:IPI00294787 RefSeq:NP_055921.2
UniGene:Hs.105399 HSSP:Q97XQ5 ProteinModelPortal:Q9Y4B4 SMR:Q9Y4B4
DIP:DIP-47284N IntAct:Q9Y4B4 MINT:MINT-3086380 STRING:Q9Y4B4
PhosphoSite:Q9Y4B4 DMDM:296439458 PaxDb:Q9Y4B4 PRIDE:Q9Y4B4
DNASU:23132 Ensembl:ENST00000409535 Ensembl:ENST00000565618
GeneID:23132 KEGG:hsa:23132 UCSC:uc003dbj.3 CTD:23132
GeneCards:GC03P051637 HGNC:HGNC:29123 HPA:HPA035004
neXtProt:NX_Q9Y4B4 PharmGKB:PA143485591 eggNOG:COG0553
HOGENOM:HOG000168429 HOVERGEN:HBG104283 InParanoid:Q9Y4B4 KO:K10876
OMA:HNLTTPF OrthoDB:EOG4X6C7G SABIO-RK:Q9Y4B4 GenomeRNAi:23132
NextBio:44383 ArrayExpress:Q9Y4B4 Bgee:Q9Y4B4 CleanEx:HS_RAD54L2
Genevestigator:Q9Y4B4 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Uniprot:Q9Y4B4
Length = 1467
Score = 462 (167.7 bits), Expect = 4.9e-106, Sum P(3) = 4.9e-106
Identities = 109/269 (40%), Positives = 160/269 (59%)
Query: 1087 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 1139
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 683 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 742
Query: 1140 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1193
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 743 FSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFN 802
Query: 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 1253
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +RYGQ KP + Y
Sbjct: 803 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIY 862
Query: 1254 RLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS 1313
RL+A T+E+KIY RQ++K+G++ RVVD +++E+ +L F + E P P +++
Sbjct: 863 RLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLLHFVEKE-PAPQVSLN 921
Query: 1314 KENGQGSSQNTNCALKH-----KLPLSHE 1337
+ + S C LK+ K P HE
Sbjct: 922 VKGIKESVLQLAC-LKYPHLITKEPFEHE 949
Score = 447 (162.4 bits), Expect = 4.9e-106, Sum P(3) = 4.9e-106
Identities = 91/192 (47%), Positives = 125/192 (65%)
Query: 858 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 916
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 440 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 499
Query: 917 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 976
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 500 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 559
Query: 977 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 1036
QR V+K LP K VI V+LS +QR LY +F+D D S+ + + +
Sbjct: 560 QRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRF---RDCGSSGWLGLNPLKAFC 616
Query: 1037 ALAQIWNHPGIL 1048
+IWNHP +L
Sbjct: 617 VCCKIWNHPDVL 628
Score = 292 (107.8 bits), Expect = 4.9e-106, Sum P(3) = 4.9e-106
Identities = 77/228 (33%), Positives = 124/228 (54%)
Query: 646 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASI-EVLG--DAITGYI 702
E++ R IE E +L + SS+S + + + G + +VL DA+ +
Sbjct: 194 EKSSRDEVIELSSGEE-DTLHIVDSSESVSEDD---EEEEKGGTHVNDVLNQRDALGRVL 249
Query: 703 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 762
VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GCILAH+MG
Sbjct: 250 VNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGCILAHSMG 308
Query: 763 LGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW-----------RPSEL 811
LGKT QVI+F+ R + +T L + PVN L NW EF W +P E+
Sbjct: 309 LGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEV 366
Query: 812 KP--LRVFMLEDVSRDR--RAELLAKWRAKGGVFLIGYTAFRNLSFGK 855
+P +V +L D + RA+++A W ++GGV L+GY +R L+ K
Sbjct: 367 QPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKK 414
Score = 38 (18.4 bits), Expect = 2.4e-79, Sum P(3) = 2.4e-79
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 641 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDG 683
D +L + + + A E+E +E + + + L++ +L+G
Sbjct: 10 DPDLDPDVELEDAEEEEEEEEVAVEECDRDDEEDLLDDPSLEG 52
Score = 37 (18.1 bits), Expect = 5.3e-63, Sum P(3) = 5.3e-63
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1027 IRKSFFAGYQALAQIWNHPGILQLTKD 1053
++KSF G + +HP I+ L ++
Sbjct: 412 LKKSFATGRPKKTKKRSHPVIIDLDEE 438
>MGI|MGI:1933196 [details] [associations]
symbol:Rad54l2 "RAD54 like 2 (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1933196 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 GO:GO:0003712 HSSP:Q97XQ5
CTD:23132 eggNOG:COG0553 HOGENOM:HOG000168429 HOVERGEN:HBG104283
KO:K10876 OrthoDB:EOG4X6C7G InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AJ132389 EMBL:BC133714 EMBL:AK143506
IPI:IPI00118760 RefSeq:NP_109655.2 UniGene:Mm.246689
ProteinModelPortal:Q99NG0 SMR:Q99NG0 STRING:Q99NG0
PhosphoSite:Q99NG0 PaxDb:Q99NG0 PRIDE:Q99NG0 GeneID:81000
KEGG:mmu:81000 UCSC:uc009rko.1 InParanoid:Q99NG0 NextBio:350334
CleanEx:MM_RAD54L2 Genevestigator:Q99NG0 Uniprot:Q99NG0
Length = 1466
Score = 459 (166.6 bits), Expect = 7.2e-105, Sum P(3) = 7.2e-105
Identities = 109/269 (40%), Positives = 159/269 (59%)
Query: 1087 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 1139
FLQG + F ++ +W +LL + L+ S KMVLL ++ +GDK LV
Sbjct: 682 FLQGVGFNPFQERGNNIVTYEWAKELLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 741
Query: 1140 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1193
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 742 FSQSLSTLALIEEFLGKRDMPCLPGAEGQGTQKWVRNVSYFRLDGSTPAFERERLINQFN 801
Query: 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 1253
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +RYGQ KP Y
Sbjct: 802 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCHIY 861
Query: 1254 RLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS 1313
RL+A T+E+KIY RQ++K+G++ RVVD +++E+ +L F + E P P T++
Sbjct: 862 RLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLLHFVEKE-PAPQTSLD 920
Query: 1314 KENGQGSSQNTNCALKH-----KLPLSHE 1337
+ + S C LK+ K P HE
Sbjct: 921 IKGIKESVLQLAC-LKYPHLITKEPFEHE 948
Score = 444 (161.4 bits), Expect = 7.2e-105, Sum P(3) = 7.2e-105
Identities = 90/192 (46%), Positives = 125/192 (65%)
Query: 858 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 916
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 439 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 498
Query: 917 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 976
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 499 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 558
Query: 977 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 1036
QR V+K LP K VI V+LS +QR LY +F+D D ++ + + +
Sbjct: 559 QRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFMDRF---RDCGTSGWLGLNPLKAFC 615
Query: 1037 ALAQIWNHPGIL 1048
+IWNHP +L
Sbjct: 616 VCCKIWNHPDVL 627
Score = 287 (106.1 bits), Expect = 7.2e-105, Sum P(3) = 7.2e-105
Identities = 65/175 (37%), Positives = 101/175 (57%)
Query: 696 DAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGC 755
DA+ +VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GC
Sbjct: 242 DALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGC 300
Query: 756 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW--------- 806
ILAH+MGLGKT QVI+F+ R + +T L + PVN L NW EF W
Sbjct: 301 ILAHSMGLGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPAPEALPA 358
Query: 807 --RPSELKP--LRVFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGK 855
+P E++P +V +L D + RA++ A W ++GGV L+GY +R L+ K
Sbjct: 359 DSKPEEVQPRFFKVHILNDEHKTVASRAKVTADWVSEGGVLLMGYEMYRLLTLKK 413
>UNIPROTKB|F1PB65 [details] [associations]
symbol:RAD54L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 CTD:23132 KO:K10876
OMA:HNLTTPF InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AAEX03012203 EMBL:AAEX03012204
RefSeq:XP_003639804.1 Ensembl:ENSCAFT00000016081 GeneID:476608
KEGG:cfa:476608 Uniprot:F1PB65
Length = 1467
Score = 452 (164.2 bits), Expect = 7.9e-105, Sum P(3) = 7.9e-105
Identities = 108/269 (40%), Positives = 157/269 (58%)
Query: 1087 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 1139
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 683 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 742
Query: 1140 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1193
FSQS+ TL LIE +L K +P PG G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 743 FSQSLSTLALIEEFLGKREVPCLPGADGQGVQKWVRNVSYFRLDGSTPAFERERLINQFN 802
Query: 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 1253
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +RYGQ KP Y
Sbjct: 803 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCHIY 862
Query: 1254 RLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS 1313
RL+A T+E+KIY RQ++K+G++ RVVD +++E+ +L F + E P P +++
Sbjct: 863 RLVADFTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLLHFVEKE-PAPQASLN 921
Query: 1314 KENGQGSSQNTNCALKH-----KLPLSHE 1337
+ + C LK+ K P HE
Sbjct: 922 VKGIKEPVLQLAC-LKYPHLITKEPFEHE 949
Score = 447 (162.4 bits), Expect = 7.9e-105, Sum P(3) = 7.9e-105
Identities = 91/192 (47%), Positives = 125/192 (65%)
Query: 858 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 916
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 440 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 499
Query: 917 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 976
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 500 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 559
Query: 977 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 1036
QR V+K LP K VI V+LS +QR LY +F+D D S+ + + +
Sbjct: 560 QRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRF---RDCGSSGWLGLNPLKAFC 616
Query: 1037 ALAQIWNHPGIL 1048
+IWNHP +L
Sbjct: 617 VCCKIWNHPDVL 628
Score = 291 (107.5 bits), Expect = 7.9e-105, Sum P(3) = 7.9e-105
Identities = 77/228 (33%), Positives = 124/228 (54%)
Query: 646 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASI-EVLG--DAITGYI 702
E++ R IE E +L + SS+S S + + G + ++L DA+ +
Sbjct: 194 EKSSRDEVIELSSGEE-DTLHIVDSSESV---SEEDEEEEKGGTHVNDILNQRDALGRVL 249
Query: 703 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 762
VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GCILAH+MG
Sbjct: 250 VNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGCILAHSMG 308
Query: 763 LGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW-----------RPSEL 811
LGKT QVI+F+ R + +T L + PVN L NW EF W +P E+
Sbjct: 309 LGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPAPEALPADNKPEEV 366
Query: 812 KP--LRVFMLEDVSRDR--RAELLAKWRAKGGVFLIGYTAFRNLSFGK 855
+P +V +L D + RA+++A W ++GGV L+GY +R L+ K
Sbjct: 367 QPRFFKVHILNDEHKTMAARAKVMADWVSEGGVLLMGYEMYRLLTLKK 414
Score = 38 (18.4 bits), Expect = 6.7e-62, Sum P(3) = 6.7e-62
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1027 IRKSFFAGYQALAQIWNHPGILQLTKD 1053
++KSF G + +HP I+ L ++
Sbjct: 412 LKKSFATGRSKKTKKRSHPVIIDLDEE 438
>WB|WBGene00006961 [details] [associations]
symbol:xnp-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0040025 "vulval development" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006915 GO:GO:0008406
GO:GO:0003677 GO:GO:0006281 GO:GO:0040035 GO:GO:0004386
GO:GO:0040025 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AF134186 EMBL:FO080106 PIR:T34036
RefSeq:NP_001020958.1 ProteinModelPortal:Q9U7E0 SMR:Q9U7E0
STRING:Q9U7E0 PaxDb:Q9U7E0 GeneID:172077 KEGG:cel:CELE_B0041.7
UCSC:B0041.7 CTD:172077 WormBase:B0041.7 HOGENOM:HOG000199608
InParanoid:Q9U7E0 KO:K10779 NextBio:873923 Uniprot:Q9U7E0
Length = 1359
Score = 630 (226.8 bits), Expect = 2.7e-100, Sum P(3) = 2.7e-100
Identities = 159/436 (36%), Positives = 237/436 (54%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
+D ++L +ET EKER++RL+ Q +F+ L L L+ +S L +
Sbjct: 379 MDSSKLQKETIDAERAEKERRKRLEKKQKEFNG-IVLEEGEDLTEMLTGTSSQRKLKSVV 437
Query: 699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
+ V E+ ++ V + +S+ LK HQ GI+FM++ +S+ ++ + +G G ILA
Sbjct: 438 LDPDSSTVDEESKKPVEVHNSLVRILKPHQAHGIQFMYDCACESLDRLDT--EGSGGILA 495
Query: 759 HTMGLGKTFQVIAFLYTAMRSVNLG--LRTALIVTPVNVLHNWKQEFMKW---RPSELKP 813
H MGLGKT QVI FL+T + +G + L+V P NV+ NW +EF KW EL
Sbjct: 496 HCMGLGKTLQVITFLHTVLMHEKIGEKCKRVLVVVPKNVIINWFKEFQKWLVDNDEELDT 555
Query: 814 LRVFMLEDVS--RDRRAELLAKWRAKG--GVFLIGYTAFRNLSFG---KHVKDRNMAREI 866
+ V L+ DRR L A W + V +IGY FR L+ K K +N R +
Sbjct: 556 IDVNELDSYKTIEDRRRALKA-WHSSKTPSVMIIGYDLFRILTVEDDPKKKKPKNRNRRL 614
Query: 867 CHALQD--------GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLME 918
A +D GPD++VCDEAH +KN + ++ + ++ +RRI LTG+PLQNNLME
Sbjct: 615 EKAKEDFRKYLQNPGPDMVVCDEAHKLKNDDSALSKCMVKILTKRRICLTGTPLQNNLME 674
Query: 919 YYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQR 978
Y+CMV+FV+ G LG+ EF NRF N I G+ +++ +V M +R H+LY+ LK V R
Sbjct: 675 YHCMVNFVKPGLLGTKTEFANRFVNIINRGRTKDASPLEVSFMKRRCHVLYDHLKKCVDR 734
Query: 979 MDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL 1038
D V+ + +PPK +VI V+ + Q LY FL ND V + + K Y
Sbjct: 735 KDYRVLTEAIPPKQEYVINVRQTERQCALYNAFL------NDIVGDSGLSKRLLPDYHMF 788
Query: 1039 AQIWNHPGILQLTKDK 1054
++IW HP L L + +
Sbjct: 789 SRIWTHPYQLVLHEQR 804
Score = 451 (163.8 bits), Expect = 2.7e-100, Sum P(3) = 2.7e-100
Identities = 94/218 (43%), Positives = 137/218 (62%)
Query: 1105 LLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK-- 1162
L+ E + S K++LL++I+ C +GDK LVFSQS+ +L LI+ L + G+
Sbjct: 934 LVKEEDRDDFALSNKLILLVEIIKKCEEIGDKLLVFSQSLESLTLIKRMLEYMAGTGQWF 993
Query: 1163 ---------QGK---LWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAG 1210
+G+ W +G+D+ +DG +S +R + FN+PLN R + LISTRAG
Sbjct: 994 ADGHEALNAEGEETWSWLEGEDYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAG 1053
Query: 1211 SLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQV 1270
SLG N+ +ANRVII D WNP++D Q+++R +R+GQTKPV+ YR +A GTMEE+IYKRQV
Sbjct: 1054 SLGTNMVAANRVIIFDACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQV 1113
Query: 1271 TKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDE-NPD 1307
TKE + RVVD Q+ R ++ L++F +PD
Sbjct: 1114 TKESTSMRVVDEAQIQRHYLGNDLTELYQFTPSTFDPD 1151
Score = 53 (23.7 bits), Expect = 2.7e-100, Sum P(3) = 2.7e-100
Identities = 23/100 (23%), Positives = 43/100 (43%)
Query: 298 NEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQKEIGSVDWTIEDSAV 357
+EKE+ S+++ KK VK+E ++ + S ++ S E+
Sbjct: 214 DEKEVKKSKKKSKKV--VKKESESEDEAPEKKKTEKRKRSKTSSEESSESEKSDEEEEEK 271
Query: 358 ETRPLVDASKSLSNKK-TDDGDMPGNNNEVALQNLETGVL 396
E+ P K L+ KK + D + ++ EV Q + G +
Sbjct: 272 ESSPKPKKKKPLAVKKLSSDEESEESDVEVLPQKKKRGAV 311
Score = 47 (21.6 bits), Expect = 4.6e-38, Sum P(3) = 4.6e-38
Identities = 21/90 (23%), Positives = 41/90 (45%)
Query: 641 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITG 700
D+ G T + + +KE+ E+ K + SSK + T+D + + + L
Sbjct: 352 DSSEGSITVNRKSKKKEKPEKKKKGIIMDSSK---LQKETIDAERAEKERRKRLEKKQKE 408
Query: 701 YIVNVVREKGEEAVRIPSSISAKLKAHQVV 730
+ +V E+GE+ + + S++ K VV
Sbjct: 409 FN-GIVLEEGEDLTEMLTGTSSQRKLKSVV 437
Score = 44 (20.5 bits), Expect = 2.4e-99, Sum P(3) = 2.4e-99
Identities = 13/73 (17%), Positives = 29/73 (39%)
Query: 306 EEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQKEIGSVDWTIEDSAVETRPLVDA 365
++ +KK +K K++ + +K+K + T E+S + +P +
Sbjct: 138 QKSKKKSKKTKKQTSSESSEESEEERKVKKSKK-NKEKSVKKRAETSEESDEDEKPSKKS 196
Query: 366 SKSLSNKKTDDGD 378
K L K + +
Sbjct: 197 KKGLKKKAKSESE 209
Score = 44 (20.5 bits), Expect = 2.4e-99, Sum P(3) = 2.4e-99
Identities = 21/102 (20%), Positives = 35/102 (34%)
Query: 305 SEEQRKKFRKVKEED--DANMDXXXXXXXXXXXXXXISKQKEIGSVDWTIEDSAVETRPL 362
S++ RK+ + E D D D K K+ + + ++ + E R
Sbjct: 79 SKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEEREQ 138
Query: 363 VDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERS 404
KS KK + + E E SVK+R+
Sbjct: 139 KSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRA 180
Score = 41 (19.5 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 13/73 (17%), Positives = 28/73 (38%)
Query: 497 NNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLF 556
N++ + PH + DC C ++ + + +C+ G++ ++ T
Sbjct: 457 NSLVRILKPHQAHGIQFMYDCACESLDRLDTEGSGGILAHCMGLGKTLQVI------TFL 510
Query: 557 CTTCVKRNISEAC 569
T + I E C
Sbjct: 511 HTVLMHEKIGEKC 523
>WB|WBGene00007761 [details] [associations]
symbol:rad-26 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:Z54236 PIR:T19508
RefSeq:NP_501545.1 ProteinModelPortal:Q18241 SMR:Q18241
DIP:DIP-26472N IntAct:Q18241 MINT:MINT-1047515 STRING:Q18241
PaxDb:Q18241 EnsemblMetazoa:C27B7.4 GeneID:177706
KEGG:cel:CELE_C27B7.4 UCSC:C27B7.4 CTD:177706 WormBase:C27B7.4
HOGENOM:HOG000022111 InParanoid:Q18241 OMA:MERSIFN NextBio:898020
Uniprot:Q18241
Length = 1274
Score = 443 (161.0 bits), Expect = 1.1e-99, Sum P(6) = 1.1e-99
Identities = 100/240 (41%), Positives = 144/240 (60%)
Query: 1079 EKPRNMNDFLQGKNDDGFFQK------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSN 1132
+KPR + +D +K DW +L ++ L+ K+V+ L+IL +
Sbjct: 732 KKPRGSKKAPKSDEEDEEVEKESRMKYDWTFELFEKYQEGVLENGYKIVISLEILDESTQ 791
Query: 1133 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQG--KLWKKGKDWYRLDGRTESSERQKLVE 1190
+G+K L+FSQ++ LD++E L K GK G + W+K +++ RLDG T ++R+KL+
Sbjct: 792 IGEKILIFSQNLTALDMLEEILKKRQIRGKDGPGQRWEKNRNYLRLDGTTSGADREKLIN 851
Query: 1191 RFN-EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKP 1249
RFN EP + LISTRAGSLGINL SANR II+D WNP +D QA+ R +RYGQ K
Sbjct: 852 RFNSEP---GLSLFLISTRAGSLGINLVSANRCIIIDACWNPCHDAQAVCRVYRYGQQKK 908
Query: 1250 VFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEM--LHLFEFGDDENPD 1307
F YRL+ +ME I+ RQ++K GL RVVD QV IS++E+ L +++ D N D
Sbjct: 909 TFVYRLIMDNSMERSIFNRQISKHGLQQRVVDDAQVDANISQKELETLLMYDEAQDVNHD 968
Score = 428 (155.7 bits), Expect = 1.1e-99, Sum P(6) = 1.1e-99
Identities = 84/186 (45%), Positives = 124/186 (66%)
Query: 870 LQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 929
L+ GPD++VCDE H IKN A+ + L + +RRI LTG PLQNNL+EY+CM+DFVR
Sbjct: 453 LEPGPDLVVCDEGHKIKNITAEISMTLGAINTKRRIVLTGYPLQNNLLEYFCMIDFVRPK 512
Query: 930 FLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP 989
+LG+ F +RF+ PI+NGQ +S+ +DVKI QR+H+L E +KGFVQR +++KK LP
Sbjct: 513 YLGTRKSFIDRFEKPIKNGQCVDSSPDDVKIALQRTHVLVELVKGFVQRRTHHLLKKILP 572
Query: 990 PKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL- 1048
+V+ ++ S +QR+LY+ F+ L +N+ + A + A ++IWNHP IL
Sbjct: 573 ESKEYVLLLRKSQIQRQLYRNFV-LWAKNEIAANNDAVFNPLMA-FSACSKIWNHPDILY 630
Query: 1049 QLTKDK 1054
+L + K
Sbjct: 631 RLVEQK 636
Score = 281 (104.0 bits), Expect = 1.1e-99, Sum P(6) = 1.1e-99
Identities = 60/158 (37%), Positives = 91/158 (57%)
Query: 702 IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 761
+VN + + + + S ++ L+ HQ+ GIRFM++N I+S+ + K D G GCILAH+M
Sbjct: 234 LVNAGHPEEDPDIFVISHLTHVLQPHQLGGIRFMYDNTIESLGEYKKSD-GFGCILAHSM 292
Query: 762 GLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS------ELKPLR 815
GLGKT QVI F +R+ + L++ P+N + NW E+ KW P ++
Sbjct: 293 GLGKTIQVITFSEIFLRATKA--KKVLVIVPINTIQNWYSEYDKWIPKFSDTGDRIRSFE 350
Query: 816 VFMLEDVSR--DRRAELLAKWRAKGGVFLIGYTAFRNL 851
VF+L D + D+R L+ +W GGV L+GY FR L
Sbjct: 351 VFLLGDGVKTFDQRVNLIEQWDQTGGVMLVGYDMFRLL 388
Score = 43 (20.2 bits), Expect = 1.1e-99, Sum P(6) = 1.1e-99
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 106 DEMTVYKEQWEAALDELET-ESAHLLEQLDGAGIELPS 142
DE T+ +EQ E DE+E E +Q + I +P+
Sbjct: 6 DENTMKEEQEEEERDEIEEKEEKPDAQQQELLNIRIPT 43
Score = 42 (19.8 bits), Expect = 1.1e-99, Sum P(6) = 1.1e-99
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 643 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDG 683
+L E +EK+R ERL+ ++ + + + M S+ L G
Sbjct: 62 DLDENVLEAQRLEKQRLERLEKIKPE-NDHIQQMESLFLAG 101
Score = 42 (19.8 bits), Expect = 5.5e-58, Sum P(6) = 5.5e-58
Identities = 18/91 (19%), Positives = 41/91 (45%)
Query: 1165 KLWKKGKDWYRL-DGRTESSERQKLVERFN--------EPLNKRVKCTLISTRAGSL--- 1212
K+W YRL + + + E +K VE+ + ++++ ++ G +
Sbjct: 621 KIWNHPDILYRLVEQKKRAEEDKKRVEQMKFAQLQQQQQQQQQQLQGMMMMGNNGMMPGF 680
Query: 1213 GINLH-SANRVIIVDGSWNPT-YDLQAIYRA 1241
G H N +++ +GSW+P Y + + + +
Sbjct: 681 GAQFHPQQNGMMMQNGSWHPNNYQMPSPFNS 711
Score = 40 (19.1 bits), Expect = 7.2e-35, Sum P(4) = 7.2e-35
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 647 ETKRKIAIEKERQERLKSLQVQ 668
E K++ +K+R E++K Q+Q
Sbjct: 634 EQKKRAEEDKKRVEQMKFAQLQ 655
Score = 38 (18.4 bits), Expect = 1.1e-99, Sum P(6) = 1.1e-99
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 1304 ENPDPLTAVSKENGQGSSQNTNCALKHKLPL 1334
EN DPL+ +S N ++ ++ + P+
Sbjct: 1030 ENYDPLSGLSSSNFYNNAPGSSMGMMGPPPV 1060
>UNIPROTKB|E1BEK4 [details] [associations]
symbol:Bt.109773 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 GO:GO:0003712 OMA:HNLTTPF InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
EMBL:DAAA02054392 EMBL:DAAA02054393 EMBL:DAAA02054394
IPI:IPI00841842 Ensembl:ENSBTAT00000045730 Uniprot:E1BEK4
Length = 1470
Score = 458 (166.3 bits), Expect = 1.4e-97, Sum P(4) = 1.4e-97
Identities = 109/269 (40%), Positives = 159/269 (59%)
Query: 1087 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 1139
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 686 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 745
Query: 1140 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1193
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 746 FSQSLSTLALIEEFLGKREVPCLPGAEGQGVQKWIRNVSYFRLDGSTPAFERERLINQFN 805
Query: 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 1253
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +RYGQ KP Y
Sbjct: 806 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCHIY 865
Query: 1254 RLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS 1313
RL+A T+E+KIY RQ++K+G++ RVVD +++E+ +L F + E P P T+++
Sbjct: 866 RLVADFTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLLHFVEKE-PAPQTSLN 924
Query: 1314 KENGQGSSQNTNCALKH-----KLPLSHE 1337
+ + C LK+ K P HE
Sbjct: 925 VKGIKEPVLQLAC-LKYPHLITKEPFEHE 952
Score = 426 (155.0 bits), Expect = 1.4e-97, Sum P(4) = 1.4e-97
Identities = 88/213 (41%), Positives = 130/213 (61%)
Query: 836 AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQA 895
+K +F++ N + K+ + +C + GPD+++CDE H IKN +A T+QA
Sbjct: 429 SKNNIFILSLKGKEN----QERKEGKFEKALC---RPGPDVVICDEGHRIKNCQASTSQA 481
Query: 896 LKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTS 955
LK ++ +RR+ LTG PLQNNL+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST
Sbjct: 482 LKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTP 541
Query: 956 EDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH 1015
+DV++M RSH+L+ L+ F+ R V+K LP K VI V+LS +QR LY +F+D
Sbjct: 542 QDVRLMRYRSHVLHSLLELFLSRRGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFMDRF 601
Query: 1016 GFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
D ++ + + + +IWNHP +L
Sbjct: 602 ---RDCGNSGWLGLNPLKAFCVCCKIWNHPDVL 631
Score = 242 (90.2 bits), Expect = 1.4e-97, Sum P(4) = 1.4e-97
Identities = 60/167 (35%), Positives = 93/167 (55%)
Query: 646 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASI-EVLG--DAITGYI 702
E++ R IE E +L + SS+S S + + G + +VL DA+ +
Sbjct: 195 EKSSRDEVIELSSGEE-DTLHIVDSSESV---SEEDEEEEKGGTHVNDVLNQRDALGRVL 250
Query: 703 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 762
VN+ EE V + ++ +K HQ+ GIRF+++N+++S+ + K+ G GCILAH+MG
Sbjct: 251 VNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSS-GFGCILAHSMG 309
Query: 763 LGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
LGKT QVI+F+ R + +T L + PVN L NW EF W P+
Sbjct: 310 LGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPA 354
Score = 44 (20.5 bits), Expect = 1.4e-97, Sum P(4) = 1.4e-97
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 639 LDDAELGEETKRKIAIEKERQE 660
L+DAE EE + ++A+E+ ++
Sbjct: 19 LEDAEEEEEEEEEVAVEEHGRD 40
Score = 40 (19.1 bits), Expect = 6.5e-77, Sum P(3) = 6.5e-77
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 342 QKEIGSVDWTIEDSAVE--TRPLVDASKSLSNKKTDDGDMPGNNNEVALQ 389
+ E S D IE S+ E T +VD+S+S+S + ++ + N+V Q
Sbjct: 193 EDEKSSRDEVIELSSGEEDTLHIVDSSESVSEEDEEEEKGGTHVNDVLNQ 242
>UNIPROTKB|E7EU19 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
GO:GO:0003712 EMBL:AC099050 EMBL:AC113933 HGNC:HGNC:29123
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC092037
IPI:IPI00916394 ProteinModelPortal:E7EU19 SMR:E7EU19 PRIDE:E7EU19
Ensembl:ENST00000296477 ArrayExpress:E7EU19 Bgee:E7EU19
Uniprot:E7EU19
Length = 1161
Score = 462 (167.7 bits), Expect = 4.6e-93, Sum P(3) = 4.6e-93
Identities = 109/269 (40%), Positives = 160/269 (59%)
Query: 1087 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 1139
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 377 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILV 436
Query: 1140 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1193
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 437 FSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFN 496
Query: 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 1253
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +RYGQ KP + Y
Sbjct: 497 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIY 556
Query: 1254 RLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS 1313
RL+A T+E+KIY RQ++K+G++ RVVD +++E+ +L F + E P P +++
Sbjct: 557 RLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLLHFVEKE-PAPQVSLN 615
Query: 1314 KENGQGSSQNTNCALKH-----KLPLSHE 1337
+ + S C LK+ K P HE
Sbjct: 616 VKGIKESVLQLAC-LKYPHLITKEPFEHE 643
Score = 447 (162.4 bits), Expect = 4.6e-93, Sum P(3) = 4.6e-93
Identities = 91/192 (47%), Positives = 125/192 (65%)
Query: 858 KDRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 916
+ + RE AL + GPD+++CDE H IKN +A T+QALK ++ +RR+ LTG PLQNNL
Sbjct: 134 RQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 193
Query: 917 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV 976
+EY+CMVDFVR FLG+ EF N F+ PI NGQ +ST +DV++M RSH+L+ L+GFV
Sbjct: 194 IEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFV 253
Query: 977 QRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 1036
QR V+K LP K VI V+LS +QR LY +F+D D S+ + + +
Sbjct: 254 QRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRF---RDCGSSGWLGLNPLKAFC 310
Query: 1037 ALAQIWNHPGIL 1048
+IWNHP +L
Sbjct: 311 VCCKIWNHPDVL 322
Score = 163 (62.4 bits), Expect = 4.6e-93, Sum P(3) = 4.6e-93
Identities = 41/110 (37%), Positives = 60/110 (54%)
Query: 761 MGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW-----------RPS 809
MGLGKT QVI+F+ R + +T L + PVN L NW EF W +P
Sbjct: 1 MGLGKTLQVISFIDVLFR--HTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPE 58
Query: 810 ELKP--LRVFMLEDVSRDR--RAELLAKWRAKGGVFLIGYTAFRNLSFGK 855
E++P +V +L D + RA+++A W ++GGV L+GY +R L+ K
Sbjct: 59 EVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKK 108
Score = 37 (18.1 bits), Expect = 4.3e-50, Sum P(3) = 4.3e-50
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1027 IRKSFFAGYQALAQIWNHPGILQLTKD 1053
++KSF G + +HP I+ L ++
Sbjct: 106 LKKSFATGRPKKTKKRSHPVIIDLDEE 132
>FB|FBgn0034976 [details] [associations]
symbol:CG4049 species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 RefSeq:NP_611885.3
UniGene:Dm.15012 ProteinModelPortal:Q9W1A8 SMR:Q9W1A8
MINT:MINT-1613726 EnsemblMetazoa:FBtr0072285 GeneID:37860
KEGG:dme:Dmel_CG4049 UCSC:CG4049-RA FlyBase:FBgn0034976
InParanoid:Q9W1A8 OMA:KCETDLD OrthoDB:EOG4N8PKK PhylomeDB:Q9W1A8
GenomeRNAi:37860 NextBio:805742 Bgee:Q9W1A8 Uniprot:Q9W1A8
Length = 1669
Score = 476 (172.6 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 102/230 (44%), Positives = 140/230 (60%)
Query: 1088 LQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTL 1147
L+ K + F W DL+ + + S KM + IL N+GD+ L+FSQS+ TL
Sbjct: 931 LKSKQRNEEFSCSWAVDLMKNYVSGLISNSPKMEIFFCILKESLNLGDRILLFSQSLLTL 990
Query: 1148 DLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLIST 1207
+L+E YL PG +LW K ++RLDG T S ER++LV FN N VK LIST
Sbjct: 991 NLLEVYLKSSYVPGSN-QLWTKNSSYFRLDGSTSSQERERLVNEFNA--NSNVKLFLIST 1047
Query: 1208 RAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 1267
RAGSLGINL ANRVII D SWNP +D QA+YR +RYGQTKP F YR++ +E+KIY
Sbjct: 1048 RAGSLGINLTGANRVIIFDASWNPCHDTQAVYRIYRYGQTKPCFVYRIVMDRCLEKKIYD 1107
Query: 1268 RQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENG 1317
RQ+ K+G++ R+VD +S +++ +L + D + D + V+K G
Sbjct: 1108 RQIKKQGMSDRIVDECNPEAHLSMKDITNLCQDYDSDE-DTVEEVNKSTG 1156
Score = 450 (163.5 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 99/238 (41%), Positives = 140/238 (58%)
Query: 827 RAELLAKWRAKGGVFLIGYTAFRNLSF---------GKHVKDRNMARE------ICHAL- 870
RA+++ W GGV LIGY FR L+ G ++ M + AL
Sbjct: 500 RAKVILNWVHDGGVLLIGYELFRLLALKLVKTRKRKGSVIRPDGMDSSSDLMNLVYEALV 559
Query: 871 QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 930
+ GPD+++CDE H IKN+ A + ALK+++ +RRI LTG PLQNNL+EY+CMVDFVR +
Sbjct: 560 KPGPDLVICDEGHRIKNSHAGISLALKEIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPNY 619
Query: 931 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 990
LG+ EF N F+ PI+NGQ +ST +D+K+M R+H+L+ L GFVQR V++ LP
Sbjct: 620 LGTRTEFCNMFERPIQNGQCVDSTPDDIKLMRYRAHVLHSLLLGFVQRRSHTVLQLTLPQ 679
Query: 991 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
K +VI VK++ QR+LY F+ D V + A + +IWNHP +L
Sbjct: 680 KYEYVILVKMTAFQRKLYDTFM------TDVVRTKAFPNPLKA-FAVCCKIWNHPDVL 730
Score = 307 (113.1 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 71/183 (38%), Positives = 102/183 (55%)
Query: 702 IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 761
+VN+ +GEE + + I+ +K HQ+ G+RF+++NII+S R+ G GCILAH+M
Sbjct: 369 VVNMAHPEGEETLYLAPQIAKVIKPHQIGGVRFLYDNIIESTRRYNKSS-GFGCILAHSM 427
Query: 762 GLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP-----SELKPLR- 815
GLGKT QV++F +R + +T L V P+N L NW EF W P S ++P
Sbjct: 428 GLGKTLQVVSFCDIFLRHTSA--KTVLCVMPINTLQNWLSEFNMWIPRYSTDSNVRPRNF 485
Query: 816 -VFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 872
+F+L D + RA+++ W GGV LIGY FR L+ K VK R + D
Sbjct: 486 DIFVLNDQQKTLTARAKVILNWVHDGGVLLIGYELFRLLAL-KLVKTRKRKGSVIRP--D 542
Query: 873 GPD 875
G D
Sbjct: 543 GMD 545
Score = 39 (18.8 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 1152 FYLSKLPRPGKQGKLWKKGKDWYRLD 1177
FY K P P G +GK+ Y +D
Sbjct: 817 FYDEK-PEPLNYGSFGSEGKNNYWMD 841
>DICTYBASE|DDB_G0293120 [details] [associations]
symbol:DDB_G0293120 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0293120
GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000199 RefSeq:XP_629344.1
ProteinModelPortal:Q54C75 EnsemblProtists:DDB0233083 GeneID:8629068
KEGG:ddi:DDB_G0293120 InParanoid:Q54C75 OMA:KGCILAH Uniprot:Q54C75
Length = 2205
Score = 848 (303.6 bits), Expect = 1.6e-81, Sum P(3) = 1.6e-81
Identities = 217/633 (34%), Positives = 340/633 (53%)
Query: 709 KGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQ 768
KGE+ + P I LK HQ G++F+W+N++ KG GCILAH+MGLGK+ Q
Sbjct: 1499 KGEDILLDPE-IGCFLKPHQHSGVQFLWDNMVF---------KGKGCILAHSMGLGKSLQ 1548
Query: 769 VIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP--LRVFMLEDVSRDR 826
VIAFL+T R + G + LIV P N L+NW++EF KW P K +RVF R
Sbjct: 1549 VIAFLHTHNR-YHKGTKYLLIV-PANTLYNWEKEFKKWLPKSEKSTNIRVFAPRHKDLVR 1606
Query: 827 RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIK 886
R W + GGV + + +F + + +H+K+R+ + I L+ D L+ DE H +K
Sbjct: 1607 RFPTFDNWFSGGGVLAMTFESFSS-TINRHIKERHPS--IAKILET--DFLIVDEGHRLK 1661
Query: 887 NTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIE 946
+T+ + A +K R++ LTG PLQNNLMEYY M+D++R LG+ EF++RF PI
Sbjct: 1662 STKTKISDAANLIKTHRKVLLTGYPLQNNLMEYYTMIDYIRPLHLGNEKEFKDRFVKPIA 1721
Query: 947 NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLP-PKTVFVITVKLSPLQR 1005
G + S D+K+M R L +K FVQR+ V+ +++ K+ +I VK + +Q
Sbjct: 1722 AGTKSESNERDIKLMRGRLAALQSLIKDFVQRLGPEVLDREMQVSKSEKMILVKRTDIQS 1781
Query: 1006 RLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP-GILQ----LTKDKGYPSRX 1060
+L + + F ND FA Y+ L + NHP G+L+ +TKD S
Sbjct: 1782 KLLEISIQNSNF-NDH----------FAQYEVLTVVCNHPDGLLEKKPLVTKDLEKKSIS 1830
Query: 1061 XXXXXXXXXNMDYNVVI--GEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKE--LDY 1116
++ +I E + + + K D Q ++ ++ Y+ ++
Sbjct: 1831 ELKSILKANDVPTADIIYKNELIQRVIHLNEIKASD-LLQPSVFSTYFNQIGYRRGIVER 1889
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
S K VL +L + ++ + FS SI TL+ +E+++ K K G WK G+D++RL
Sbjct: 1890 SNKFVLFFSMLKHFNQNNERVVTFSFSISTLNQLEYFIQK-----KLG--WKAGRDYFRL 1942
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T + RQ+L+++FN+ N +K LIST+AGSLG NL RVI++D SWNP +D Q
Sbjct: 1943 DGSTPTKTRQRLIDQFNDMAND-IKLFLISTKAGSLGTNLTGGTRVILMDLSWNPVHDRQ 2001
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLH 1296
A+YR +R GQ V Y L+ GT E+K Y + + K+ L+ R VD + + + ++ L
Sbjct: 2002 AVYRCYRMGQKNQVHVYTLVMAGTGEQKTYTQMIYKQTLSKRAVD-SETPKNVEEDIRLK 2060
Query: 1297 LFEFGDDENPDPLTAVSKENGQGSSQNTNCALK 1329
+ E D P + ++++E G+ N ++
Sbjct: 2061 IGELVDI--PYDVVSINRELEHGTDPIFNKVIR 2091
Score = 53 (23.7 bits), Expect = 1.6e-81, Sum P(3) = 1.6e-81
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 675
++ L +E + K +EKER E+ KSL+ Q K +L
Sbjct: 742 VEKERLEKERQEKERLEKERLEKEKSLREQLE-KERL 777
Score = 48 (22.0 bits), Expect = 5.3e-81, Sum P(3) = 5.3e-81
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 641 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 675
D E +E K+K+ EK +ERL+ +++ K KL
Sbjct: 605 DKEKNKE-KKKLEKEKLEKERLEKERLERLEKEKL 638
Score = 48 (22.0 bits), Expect = 5.3e-81, Sum P(3) = 5.3e-81
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 639 LDDAELGEETKRKIAIEKER--QERLKSLQVQFSSKSKL 675
L+ L +E K +EKER +ERL+ L+ + K +L
Sbjct: 694 LEKERLEKERLEKERLEKERLEKERLERLEKERLEKERL 732
Score = 46 (21.3 bits), Expect = 4.5e-81, Sum P(2) = 4.5e-81
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 299 EKELALSEE-QRKKFRK--VKEEDDAN 322
EKE +L E+ +++K K KE+DD N
Sbjct: 816 EKEKSLKEKLEKEKIEKDKEKEDDDEN 842
Score = 46 (21.3 bits), Expect = 8.6e-81, Sum P(3) = 8.6e-81
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 644 LGEETKRKIAIEKERQERL--KSLQVQFSSKSKL 675
L +E K +EKER E+L + L+ + S K KL
Sbjct: 792 LEKERLEKERLEKERLEKLLKEKLEKEKSLKEKL 825
Score = 46 (21.3 bits), Expect = 8.6e-81, Sum P(3) = 8.6e-81
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 643 ELGEETKRKIAIEKERQERLKS--LQVQFSSKSKL 675
+L +E K +EKER ERL+ L+ + K KL
Sbjct: 614 KLEKEKLEKERLEKERLERLEKEKLEKEKLEKEKL 648
Score = 46 (21.3 bits), Expect = 8.6e-81, Sum P(3) = 8.6e-81
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSK 674
L+ L +E K +EKERQE+ + L+ + K K
Sbjct: 732 LEKERLEKERVEKERLEKERQEK-ERLEKERLEKEK 766
Score = 44 (20.5 bits), Expect = 1.4e-80, Sum P(3) = 1.4e-80
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 647 ETKRKIAIEKER--QERLKSLQVQFSSKSKL 675
E K +EKER +ERL+ L+ + K KL
Sbjct: 659 EKLEKERLEKERLEKERLERLEKERLEKEKL 689
Score = 44 (20.5 bits), Expect = 1.4e-80, Sum P(3) = 1.4e-80
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 639 LDDAELGEETKRKIAIEKER--QERLKSLQVQFSSKSKL 675
L+ +L +E K +EKE+ +E+L+ L+ + K +L
Sbjct: 633 LEKEKLEKEKLEKEKLEKEKLEKEKLEKLEKERLEKERL 671
Score = 43 (20.2 bits), Expect = 1.8e-80, Sum P(3) = 1.8e-80
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 643 ELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 675
+L +E K ++EKER ER + L+ + K +L
Sbjct: 771 QLEKERLEKESLEKERVER-ERLEKERLEKERL 802
Score = 43 (20.2 bits), Expect = 1.8e-80, Sum P(3) = 1.8e-80
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 639 LDDAELGEETKRKIAIEKER--QERLKSLQVQFSSKSKLMNSVTL 681
L+ L +E + +EKER +ERL+ +++ K KL +L
Sbjct: 777 LEKESLEKERVERERLEKERLEKERLEKERLEKLLKEKLEKEKSL 821
Score = 42 (19.8 bits), Expect = 2.3e-80, Sum P(3) = 2.3e-80
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 675
L+ L +E K +EKER E+ + L+ + K +L
Sbjct: 722 LEKERLEKERLEKERLEKERVEK-ERLEKERQEKERL 757
Score = 41 (19.5 bits), Expect = 1.6e-81, Sum P(3) = 1.6e-81
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 353 EDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQN 390
ED+ +D SK N D + NNN N
Sbjct: 314 EDTMHHNINFLDVSKDDGNSDNDISNALNNNNNTNTNN 351
Score = 41 (19.5 bits), Expect = 2.9e-80, Sum P(3) = 2.9e-80
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 675
L+ +L +E K +EKER E+ + L+ + K +L
Sbjct: 684 LEKEKLEKERLEKERLEKERLEK-ERLEKERLEKERL 719
Score = 40 (19.1 bits), Expect = 3.7e-80, Sum P(3) = 3.7e-80
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 675
L+ L +E K +EKER E+ + L+ + K +L
Sbjct: 679 LEKERLEKEKLEKERLEKERLEK-ERLEKERLEKERL 714
Score = 39 (18.8 bits), Expect = 4.7e-80, Sum P(3) = 4.7e-80
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 675
L+ L +E + +EKER E+ +SL+ + + +L
Sbjct: 757 LEKERLEKEKSLREQLEKERLEK-ESLEKERVERERL 792
Score = 37 (18.1 bits), Expect = 7.6e-80, Sum P(3) = 7.6e-80
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQ 668
L+ +L +E K +EK +ERL+ +++
Sbjct: 643 LEKEKLEKEKLEKEKLEKLEKERLEKERLE 672
>UNIPROTKB|F1S3V8 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 OMA:TYQALMG EMBL:CU694667
Ensembl:ENSSSCT00000004320 Uniprot:F1S3V8
Length = 747
Score = 432 (157.1 bits), Expect = 6.3e-63, Sum P(2) = 6.3e-63
Identities = 108/349 (30%), Positives = 177/349 (50%)
Query: 707 REKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 766
+EK V + +S L+ HQ G+RF+WE + R++ GCI+A MGLGKT
Sbjct: 136 KEKLPVHVVVDPVLSKVLRPHQREGVRFLWECVTS--RRIPGSH---GCIMADEMGLGKT 190
Query: 767 FQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVS 823
Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 191 LQCITLMWTLLRQSPDCKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDAGSKDE 250
Query: 824 RDRRAELLAKWRAK---GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-DILVC 879
D++ E R + +I Y FR HV LQ G +++C
Sbjct: 251 IDQKLEGFMNQRGARVPSPILIISYETFR-----LHVG----------VLQKGSVGLVIC 295
Query: 880 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 939
DE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++HEF+
Sbjct: 296 DEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGLLGTAHEFKK 355
Query: 940 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVK 999
RF+ PI G+ ++ ED ++ +R L + + R +++ K LP K V+ +
Sbjct: 356 RFELPILKGRDAAASEEDRRLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCR 415
Query: 1000 LSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
L+PLQ LYKRFL + + K+ S + +L ++ NHP ++
Sbjct: 416 LTPLQTELYKRFLR-QAKPAEELREGKMSVSSLSSITSLKKLCNHPALI 463
Score = 294 (108.6 bits), Expect = 6.3e-63, Sum P(2) = 6.3e-63
Identities = 78/188 (41%), Positives = 108/188 (57%)
Query: 1113 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1171
E SGKM++L IL + S DK ++ S TLDL E KL R + L+
Sbjct: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFE----KLCRARRY--LY---- 540
Query: 1172 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1231
RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WNP
Sbjct: 541 --VRLDGTMSIKKRAKVVERFNSPSSPDF-VFMLSSKAGGCGLNLIGANRLVMFDPDWNP 597
Query: 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTIS 1290
D QA+ R WR GQ K + YRL++ GT+EEKI++RQ K+ L++ VVD +Q V R S
Sbjct: 598 ANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFS 657
Query: 1291 KEEMLHLF 1298
E+ LF
Sbjct: 658 LGELKELF 665
Score = 37 (18.1 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 294 DAIANEKELALSEEQRKKFRKV 315
DA A+E++ L EE+ ++ +
Sbjct: 366 DAAASEEDRRLGEERLRELTSI 387
>DICTYBASE|DDB_G0285117 [details] [associations]
symbol:rad54b "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0285117 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000074 KO:K10877 RefSeq:XP_639875.1 STRING:Q54NP1
EnsemblProtists:DDB0232413 GeneID:8624946 KEGG:ddi:DDB_G0285117
InParanoid:Q54NP1 OMA:PINKSRE ProtClustDB:CLSZ2735674
Uniprot:Q54NP1
Length = 989
Score = 429 (156.1 bits), Expect = 7.3e-63, Sum P(2) = 7.3e-63
Identities = 120/359 (33%), Positives = 191/359 (53%)
Query: 708 EKGEEAVRIPSS--ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGL-GCILAHTMGLG 764
E+G + V + I L+ HQ G++F+++ + + S D G G ILA MGLG
Sbjct: 261 EEGNKVVHVVLDPYIGRHLRPHQRRGVKFLYDCVTGN-----SNDNGYSGAILADQMGLG 315
Query: 765 KTFQVIAFLYTAMRSVNLG---LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 821
KT Q +A L+T ++ G ++ A+IVTP +++NWK E KW + + + + +
Sbjct: 316 KTLQTLALLWTLLKQSPYGKPTIKKAIIVTPSTLVNNWKSEIQKWFGNG-RLIASTLTDS 374
Query: 822 VSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 881
++++ +A L + V +I Y R F K ++ + C ++VCDE
Sbjct: 375 LTKETKANLNDFNTSIKPVLIISYEQCR--IFSKELETMS-----C-------GLMVCDE 420
Query: 882 AHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRF 941
AH +KN+ A TTQ++ V+C R+I LTG+P+QNNL+E+Y M+DF LGS +F+ F
Sbjct: 421 AHRLKNSNAKTTQSIMSVRCDRKILLTGTPIQNNLVEFYSMMDFANPNCLGSLADFKKSF 480
Query: 942 QNPIENGQHT-NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKL 1000
PI + + NSTS I ++S L + +K F+ R N+++K LPPK V +I KL
Sbjct: 481 IIPINKSRESPNSTSTSEGI--RKSIQLSKLVKPFIIRRKSNILEKYLPPKRVQIIFCKL 538
Query: 1001 SPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF--FAGYQALAQIWNHPGILQLT--KDKG 1055
S LQ LYK L+ + +S R S + L ++ N P +L L +D+G
Sbjct: 539 SSLQIELYKSILNSNS-VKSLLSGGGSRGSATSLSTITLLKKLCNSPSLLLLNNKQDEG 596
Score = 304 (112.1 bits), Expect = 7.3e-63, Sum P(2) = 7.3e-63
Identities = 82/265 (30%), Positives = 133/265 (50%)
Query: 1088 LQGKNDDGFFQKDWW-NDLLHEHTYKELDY----------SGKMVLLLDILTMCSNMGDK 1136
L K D+G Q+ ++L +H Y +Y SGK++ + ++ M +K
Sbjct: 589 LNNKQDEGGEQQQTEIQNILKKHNYTLENYQEIQEQQDNESGKLLFVESLIKQLKPMNEK 648
Query: 1137 SLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196
++ S TLD+ E +L D RLDG ++ RQ LV++FN
Sbjct: 649 LVLVSNFTKTLDVFERLCKRL------------SIDTLRLDGDVKADSRQALVDKFNSST 696
Query: 1197 ---------NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT 1247
+ + + L+S +AG +GINL N +++ D WNP D+QA+ R WR GQT
Sbjct: 697 QNVSSSKSSSSQYQVFLLSAKAGGVGINLIGGNHLVLYDPDWNPAIDIQAMERIWREGQT 756
Query: 1248 KPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR--TISKEEMLHLFEFGDDEN 1305
KPVF YRL + GT+EEKIY+RQ+ KE ++ +VD++ S E++ +F + ++ N
Sbjct: 757 KPVFIYRLFSTGTIEEKIYQRQLMKESISNSIVDKKFNDNGGNFSLEDLKDIFSYNENTN 816
Query: 1306 PDPLTAVSKENGQGSSQ-NTNCALK 1329
D + G +S +T+ +K
Sbjct: 817 SDTHDLLQCNCGNSNSNASTSINIK 841
>UNIPROTKB|G4N791 [details] [associations]
symbol:MGG_06447 "SNF2 family ATP-dependent
chromatin-remodeling factor snf21" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 RefSeq:XP_003717120.1 ProteinModelPortal:G4N791
EnsemblFungi:MGG_06447T0 GeneID:2684602 KEGG:mgr:MGG_06447
Uniprot:G4N791
Length = 1592
Score = 434 (157.8 bits), Expect = 5.5e-62, Sum P(2) = 5.5e-62
Identities = 108/389 (27%), Positives = 191/389 (49%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
+ D E KR++ +K Q+ ++ L + ++ +L A + +
Sbjct: 494 ISDEEPSPSKKRRVKRDKAAQD-MRDLD-----RRRMEEQEERSRELRAQLAKSDMSGLQ 547
Query: 699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
+ I+N ++ + + +P I+ +K HQ+ G+RFMW ++ D+ GC+LA
Sbjct: 548 SRLIINEAKKASQGFIYVPEPIAQNIKDHQIEGVRFMWNQVVND-------DRSQGCLLA 600
Query: 759 HTMGLGKTFQVIAFLYTAMRSVN-------------LGLRTALIVTPVNVLHNWKQEFMK 805
HTMGLGKT QVI L + L L++ P +L+NW EF +
Sbjct: 601 HTMGLGKTVQVICLLVAIQHAAQSPDPSVVSQIPKELQRSQTLVLCPPGLLNNWLDEFSR 660
Query: 806 W-RPSELKPLRVFMLE-DVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA 863
W P + R++ ++ ++ + RA + W GG+ L+GY+ FR+L K +
Sbjct: 661 WVEPYDALG-RIYKIDSEIPAEARAASIEPWVNTGGILLMGYSLFRSLVSSGDSKMQTWL 719
Query: 864 REICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 923
E+ P I+V DEAH IKN R+ ++A+ K + +IA+TGSPL N++ +Y+ M+
Sbjct: 720 TEL-------PSIVVADEAHTIKNERSKISEAMANFKAKAKIAMTGSPLANSVGDYFSMI 772
Query: 924 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 983
++V +LG EF + F +PI+ G +S+ + + + L + + V RM
Sbjct: 773 NWVAPNYLGPRKEFTHFFASPIQEGLFVDSSPAEKRRAMKLLKALKDTVSPKVHRMTTTA 832
Query: 984 VKKDLPPKTVFVITVKLSPLQRRLYKRFL 1012
++ LP K +VI V L+ Q+ Y+ ++
Sbjct: 833 LRGQLPEKREYVIVVPLTEYQKSAYEVYM 861
Score = 298 (110.0 bits), Expect = 5.5e-62, Sum P(2) = 5.5e-62
Identities = 72/170 (42%), Positives = 98/170 (57%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
LD+S K+ +L IL +GDK L+FS IP L+ +E + RP +
Sbjct: 936 LDHSYKITVLTRILDEAKRVGDKVLIFSSRIPVLNFLENLMKMQKRP------------Y 983
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG T+ S RQ V FN N V LIST AG +G+N+ ANRV+++D W P
Sbjct: 984 SRLDGETKISTRQASVANFNAN-NDEVY--LISTNAGGVGLNIQGANRVVMMDFQWQPAN 1040
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQ 1283
+ QAI RA+R GQTKPV+ Y L+ GT E K++ + K LA+RVVD++
Sbjct: 1041 EQQAIGRAYRIGQTKPVYVYWLIVGGTYEPKLHAAAIFKTQLASRVVDKK 1090
>UNIPROTKB|F1PJC9 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:AAEX03009776 RefSeq:XP_532592.3 Ensembl:ENSCAFT00000006871
GeneID:475368 KEGG:cfa:475368 Uniprot:F1PJC9
Length = 747
Score = 414 (150.8 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 105/349 (30%), Positives = 174/349 (49%)
Query: 707 REKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 766
+EK V + +S L+ HQ G++F+WE + R++ GCI+A MGLGKT
Sbjct: 136 KEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTS--RRIPGSH---GCIMADEMGLGKT 190
Query: 767 FQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVS 823
Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 191 LQCITLIWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDE 250
Query: 824 RDRRAELLAKWRA---KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-DILVC 879
D++ E R + +I Y FR HV LQ G +++C
Sbjct: 251 IDQKLEGFMNQRGVRVPSPILIISYETFR-----LHVG----------VLQKGSVGLVIC 295
Query: 880 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 939
DE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++HEF+
Sbjct: 296 DEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKK 355
Query: 940 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVK 999
F+ PI G+ ++ D ++ +R L + + R +++ K LP K V+ +
Sbjct: 356 HFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCR 415
Query: 1000 LSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
L+PLQ LYKRFL + + K+ S + L ++ NHP ++
Sbjct: 416 LTPLQTELYKRFLK-QAKPAEELREGKMTVSSLSSITLLKKLCNHPALI 463
Score = 300 (110.7 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 79/188 (42%), Positives = 109/188 (57%)
Query: 1113 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1171
E SGKM++L IL + S DK ++ S TLDL E KL R + L+
Sbjct: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFE----KLCRARRY--LY---- 540
Query: 1172 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1231
RLDG +R K+VERFN PL+ ++S++AG G+NL ANR+++ D WNP
Sbjct: 541 --VRLDGTMSIKKRAKVVERFNNPLSPDF-VFMLSSKAGGCGLNLIGANRLVMFDPDWNP 597
Query: 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTIS 1290
D QA+ R WR GQ K + YRL++ GT+EEKI++RQ K+ L++ VVD +Q V R S
Sbjct: 598 ANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFS 657
Query: 1291 KEEMLHLF 1298
E+ LF
Sbjct: 658 LGELKELF 665
>UNIPROTKB|O12944 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
HOGENOM:HOG000204521 HOVERGEN:HBG058654 EMBL:U92461 IPI:IPI00588266
UniGene:Gga.3308 ProteinModelPortal:O12944 SMR:O12944 STRING:O12944
InParanoid:O12944 OrthoDB:EOG4D7Z53 Uniprot:O12944
Length = 733
Score = 410 (149.4 bits), Expect = 4.0e-61, Sum P(2) = 4.0e-61
Identities = 101/353 (28%), Positives = 178/353 (50%)
Query: 703 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 762
+ + ++K V + +S L+ HQ G++F+W+ + R++ GCI+A MG
Sbjct: 121 LKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTS--RRIPGSH---GCIMADEMG 175
Query: 763 LGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF-- 817
LGKT Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 176 LGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQPLAIDGG 235
Query: 818 MLEDVSRDRRAELLAKW-RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-D 875
E++ R + + R + +I Y FR H + ALQ G
Sbjct: 236 SKEEIDRKLVGSMNQRGLRVPSPILIISYETFR-----LHAE----------ALQKGSVG 280
Query: 876 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
+++CDE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++
Sbjct: 281 LVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ 340
Query: 936 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 995
EF+ F+ PI G+ +++ + + +R L + + R +++ K LP K V
Sbjct: 341 EFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQV 400
Query: 996 ITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
+ +L+PLQ LYK FL + + KI S + +L ++ NHP ++
Sbjct: 401 VCCRLTPLQAELYKNFLK-QAKPVEELKEGKINVSSLSSITSLKKLCNHPALI 452
Score = 300 (110.7 bits), Expect = 4.0e-61, Sum P(2) = 4.0e-61
Identities = 77/193 (39%), Positives = 108/193 (55%)
Query: 1113 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1171
E SGKM++L IL + S DK ++ S TLDL E KL + +
Sbjct: 480 EPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFE-------------KLCRNRR 526
Query: 1172 DWY-RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWN 1230
Y RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WN
Sbjct: 527 YLYVRLDGTMSIKKRAKVVERFNSPSSPEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWN 585
Query: 1231 PTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTI 1289
P D QA+ R WR GQ K + YRL++ GT+EEKI++RQ K+ L++ VVD +Q V R
Sbjct: 586 PANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHF 645
Query: 1290 SKEEMLHLFEFGD 1302
S E+ LF +
Sbjct: 646 SLGELKELFSLNE 658
>ZFIN|ZDB-GENE-040426-968 [details] [associations]
symbol:rad54l "RAD54-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA;ISS] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-968 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008094 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 CTD:8438
EMBL:BC046050 IPI:IPI00507004 RefSeq:NP_957438.1 UniGene:Dr.78565
PDB:1Z3I PDBsum:1Z3I ProteinModelPortal:Q7ZV09 SMR:Q7ZV09
STRING:Q7ZV09 GeneID:394119 KEGG:dre:394119 InParanoid:Q7ZV09
EvolutionaryTrace:Q7ZV09 NextBio:20815072 ArrayExpress:Q7ZV09
Uniprot:Q7ZV09
Length = 738
Score = 412 (150.1 bits), Expect = 4.1e-61, Sum P(2) = 4.1e-61
Identities = 105/376 (27%), Positives = 196/376 (52%)
Query: 688 GASIEVLGDAITGY-IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKV 746
GA + AI+ + ++ +EK V + +S L+ HQ G++F+W+ + R++
Sbjct: 110 GALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTG--RRI 167
Query: 747 KSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEF 803
++ GCI+A MGLGKT Q I ++T ++ + ++V+P +++ NW E
Sbjct: 168 ENS---YGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 224
Query: 804 MKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA 863
KW ++P+ + + S+D L + ++ G+ + T +S+ + +
Sbjct: 225 GKWLGGRVQPVAI---DGGSKDEIDSKLVNFISQQGMRIP--TPILIISY----ETFRLH 275
Query: 864 REICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 923
E+ H + G +++CDE H +KN+ T AL + QRR+ ++G+P+QN+L+EY+ +V
Sbjct: 276 AEVLHKGKVG--LVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLV 333
Query: 924 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 983
FV G LG++ EF+ RF+ PI G+ +++ +D Q+ L + + R ++
Sbjct: 334 HFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDI 393
Query: 984 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWN 1043
+ K LP K V+ L+PLQ+ LYK FL + + KI S + +L ++ N
Sbjct: 394 LSKYLPVKIEQVVCCNLTPLQKELYKLFLK-QAKPVESLQTGKISVSSLSSITSLKKLCN 452
Query: 1044 HPGILQ---LTKDKGY 1056
HP ++ LT ++G+
Sbjct: 453 HPALIYEKCLTGEEGF 468
Score = 298 (110.0 bits), Expect = 4.1e-61, Sum P(2) = 4.1e-61
Identities = 77/193 (39%), Positives = 107/193 (55%)
Query: 1113 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1171
E SGKM++L IL M + DK ++ S TLDL E KL + +
Sbjct: 485 EPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFE-------------KLCRNRR 531
Query: 1172 DWY-RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWN 1230
Y RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WN
Sbjct: 532 YLYVRLDGTMSIKKRAKIVERFNNPSSPEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWN 590
Query: 1231 PTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTI 1289
P D QA+ R WR GQ K + YRL++ GT+EEKI +RQ K+ L++ VVD +Q V R
Sbjct: 591 PANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHF 650
Query: 1290 SKEEMLHLFEFGD 1302
S E+ LF +
Sbjct: 651 SLGELRELFSLNE 663
>UNIPROTKB|Q92698 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006310
"DNA recombination" evidence=TAS] [GO:0007126 "meiosis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0042493 GO:GO:0003677 GO:GO:0006281 GO:GO:0010212
GO:GO:0006310 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_RAD54L GO:GO:0036310 EMBL:AL121602 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG
EMBL:X97795 EMBL:AY623117 EMBL:BC121059 EMBL:BC121060
IPI:IPI00294292 RefSeq:NP_001136020.1 RefSeq:NP_003570.2
UniGene:Hs.642042 ProteinModelPortal:Q92698 SMR:Q92698
DIP:DIP-48628N IntAct:Q92698 STRING:Q92698 PhosphoSite:Q92698
DMDM:51316508 PaxDb:Q92698 PRIDE:Q92698 Ensembl:ENST00000371975
Ensembl:ENST00000442598 GeneID:8438 KEGG:hsa:8438 UCSC:uc001cpl.2
CTD:8438 GeneCards:GC01P046713 HGNC:HGNC:9826 MIM:603615
neXtProt:NX_Q92698 PharmGKB:PA34181 InParanoid:Q92698
PhylomeDB:Q92698 ChiTaRS:RAD54L GenomeRNAi:8438 NextBio:31570
ArrayExpress:Q92698 Bgee:Q92698 Genevestigator:Q92698
GermOnline:ENSG00000085999 Uniprot:Q92698
Length = 747
Score = 415 (151.1 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 105/349 (30%), Positives = 175/349 (50%)
Query: 707 REKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 766
+EK V + +S L+ HQ G++F+WE + R++ GCI+A MGLGKT
Sbjct: 136 KEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTS--RRIPGSH---GCIMADEMGLGKT 190
Query: 767 FQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVS 823
Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 191 LQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDE 250
Query: 824 RDRRAELLAKWRA---KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-DILVC 879
D++ E R + +I Y FR HV LQ G +++C
Sbjct: 251 IDQKLEGFMNQRGARVSSPILIISYETFR-----LHVG----------VLQKGSVGLVIC 295
Query: 880 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 939
DE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++HEF+
Sbjct: 296 DEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKK 355
Query: 940 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVK 999
F+ PI G+ ++ D ++ +R L + + R +++ K LP K V+ +
Sbjct: 356 HFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCR 415
Query: 1000 LSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
L+PLQ LYKRFL + + K+ S + +L ++ NHP ++
Sbjct: 416 LTPLQTELYKRFLR-QAKPAEELLEGKMSVSSLSSITSLKKLCNHPALI 463
Score = 294 (108.6 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 78/188 (41%), Positives = 108/188 (57%)
Query: 1113 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1171
E SGKM++L IL + S DK ++ S TLDL E KL R + L+
Sbjct: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFE----KLCRARRY--LY---- 540
Query: 1172 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1231
RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WNP
Sbjct: 541 --VRLDGTMSIKKRAKVVERFNSPSSPDF-VFMLSSKAGGCGLNLIGANRLVMFDPDWNP 597
Query: 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTIS 1290
D QA+ R WR GQ K + YRL++ GT+EEKI++RQ K+ L++ VVD +Q V R S
Sbjct: 598 ANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFS 657
Query: 1291 KEEMLHLF 1298
E+ LF
Sbjct: 658 LGELKELF 665
>UNIPROTKB|A1L4Z4 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:DAAA02009002 EMBL:BT029781 IPI:IPI00691258
RefSeq:NP_001124238.1 UniGene:Bt.106758 SMR:A1L4Z4 STRING:A1L4Z4
Ensembl:ENSBTAT00000026513 GeneID:100140639 KEGG:bta:100140639
InParanoid:A1L4Z4 NextBio:20790996 Uniprot:A1L4Z4
Length = 749
Score = 414 (150.8 bits), Expect = 5.6e-61, Sum P(2) = 5.6e-61
Identities = 105/349 (30%), Positives = 175/349 (50%)
Query: 707 REKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 766
+EK V + +S L+ HQ G++F+WE + R++ GCI+A MGLGKT
Sbjct: 137 KEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTS--RRIPGSH---GCIMADEMGLGKT 191
Query: 767 FQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVS 823
Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 192 LQCITLMWTLLRQSPDCKPEIDKAVVVSPSSLVRNWYNEVGKWLGGRIQPLAIDGGSKDE 251
Query: 824 RDRRAELLAKWRAK---GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-DILVC 879
D++ E R + +I Y FR HV LQ G +++C
Sbjct: 252 IDQKLEGFMNQRGARVPSPILIISYETFR-----LHVG----------VLQKGSVGLVIC 296
Query: 880 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 939
DE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++ EF+
Sbjct: 297 DEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKK 356
Query: 940 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVK 999
F+ PI G+ ++ ED ++ +R L + + R +++ K LP K V+ +
Sbjct: 357 HFELPILKGRDAAASEEDRRVGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCR 416
Query: 1000 LSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
L+PLQ LYKRFL + + K+ S + +L ++ NHP ++
Sbjct: 417 LTPLQIELYKRFLR-QAKPAEELREGKMSVSSLSSITSLKKLCNHPALI 464
Score = 295 (108.9 bits), Expect = 5.6e-61, Sum P(2) = 5.6e-61
Identities = 79/197 (40%), Positives = 111/197 (56%)
Query: 1113 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1171
E SGKM++L IL + S DK ++ S TLDL E KL R + L+
Sbjct: 492 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFE----KLCRARRY--LY---- 541
Query: 1172 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1231
RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WNP
Sbjct: 542 --VRLDGTMSIKKRAKVVERFNNPSSPDF-VFMLSSKAGGCGLNLIGANRLVMFDPDWNP 598
Query: 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTIS 1290
D QA+ R WR GQ K + YRL++ GT+EEKI++RQ K+ L++ VVD +Q V R S
Sbjct: 599 ANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFS 658
Query: 1291 KEEMLHLFEFGDDENPD 1307
E+ LF + + D
Sbjct: 659 LGELKELFTLDEAKLSD 675
>UNIPROTKB|F1NBD4 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AADN02012644 IPI:IPI00818904
Ensembl:ENSGALT00000016863 ArrayExpress:F1NBD4 Uniprot:F1NBD4
Length = 733
Score = 407 (148.3 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 101/353 (28%), Positives = 178/353 (50%)
Query: 703 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 762
+ + ++K V + +S L+ HQ G++F+W+ + R++ GCI+A MG
Sbjct: 121 LKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTS--RRIPGSH---GCIMADEMG 175
Query: 763 LGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF-- 817
LGKT Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 176 LGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQPLAIDGG 235
Query: 818 MLEDVSRDRRAELLAKW-RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-D 875
E++ R + + R + +I Y FR H + ALQ G
Sbjct: 236 SKEEIDRKLVGFMNQRGLRVPSPILIISYETFR-----LHAE----------ALQKGSVG 280
Query: 876 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
+++CDE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++
Sbjct: 281 LVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ 340
Query: 936 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 995
EF+ F+ PI G+ +++ + + +R L + + R +++ K LP K V
Sbjct: 341 EFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQV 400
Query: 996 ITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
+ +L+PLQ LYK FL + + KI S + +L ++ NHP ++
Sbjct: 401 VCCRLTPLQAELYKNFLK-QAKPVEELKEGKINVSSLSSITSLKKLCNHPALI 452
Score = 300 (110.7 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 77/193 (39%), Positives = 108/193 (55%)
Query: 1113 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1171
E SGKM++L IL + S DK ++ S TLDL E KL + +
Sbjct: 480 EPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFE-------------KLCRNRR 526
Query: 1172 DWY-RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWN 1230
Y RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WN
Sbjct: 527 YLYVRLDGTMSIKKRAKVVERFNSPSSPEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWN 585
Query: 1231 PTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTI 1289
P D QA+ R WR GQ K + YRL++ GT+EEKI++RQ K+ L++ VVD +Q V R
Sbjct: 586 PANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHF 645
Query: 1290 SKEEMLHLFEFGD 1302
S E+ LF +
Sbjct: 646 SLGELKELFSLNE 658
>UNIPROTKB|F1NX31 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00588266 OMA:TYQALMG
EMBL:AADN02012644 Ensembl:ENSGALT00000038354 ArrayExpress:F1NX31
Uniprot:F1NX31
Length = 742
Score = 407 (148.3 bits), Expect = 9.7e-61, Sum P(2) = 9.7e-61
Identities = 101/353 (28%), Positives = 178/353 (50%)
Query: 703 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 762
+ + ++K V + +S L+ HQ G++F+W+ + R++ GCI+A MG
Sbjct: 130 LKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTS--RRIPGSH---GCIMADEMG 184
Query: 763 LGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF-- 817
LGKT Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 185 LGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQPLAIDGG 244
Query: 818 MLEDVSRDRRAELLAKW-RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-D 875
E++ R + + R + +I Y FR H + ALQ G
Sbjct: 245 SKEEIDRKLVGFMNQRGLRVPSPILIISYETFR-----LHAE----------ALQKGSVG 289
Query: 876 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
+++CDE H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++
Sbjct: 290 LVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ 349
Query: 936 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 995
EF+ F+ PI G+ +++ + + +R L + + R +++ K LP K V
Sbjct: 350 EFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQV 409
Query: 996 ITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
+ +L+PLQ LYK FL + + KI S + +L ++ NHP ++
Sbjct: 410 VCCRLTPLQAELYKNFLK-QAKPVEELKEGKINVSSLSSITSLKKLCNHPALI 461
Score = 300 (110.7 bits), Expect = 9.7e-61, Sum P(2) = 9.7e-61
Identities = 77/193 (39%), Positives = 108/193 (55%)
Query: 1113 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1171
E SGKM++L IL + S DK ++ S TLDL E KL + +
Sbjct: 489 EPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFE-------------KLCRNRR 535
Query: 1172 DWY-RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWN 1230
Y RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WN
Sbjct: 536 YLYVRLDGTMSIKKRAKVVERFNSPSSPEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWN 594
Query: 1231 PTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTI 1289
P D QA+ R WR GQ K + YRL++ GT+EEKI++RQ K+ L++ VVD +Q V R
Sbjct: 595 PANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHF 654
Query: 1290 SKEEMLHLFEFGD 1302
S E+ LF +
Sbjct: 655 SLGELKELFSLNE 667
>TAIR|locus:2094083 [details] [associations]
symbol:RAD54 "homolog of RAD54" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=ISS] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0010332 "response to gamma
radiation" evidence=IEP;RCA] [GO:0006302 "double-strand break
repair" evidence=RCA] [GO:0006310 "DNA recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0007140 "male meiosis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0010332 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0045003
HOGENOM:HOG000204521 KO:K10875 EMBL:DQ912973 EMBL:AB250666
IPI:IPI00531645 RefSeq:NP_188552.3 UniGene:At.53386 SMR:Q0PCS3
IntAct:Q0PCS3 STRING:Q0PCS3 EnsemblPlants:AT3G19210.1 GeneID:821455
KEGG:ath:AT3G19210 TAIR:At3g19210 InParanoid:Q0PCS3 OMA:SDTHDRF
ProtClustDB:CLSN2693236 Genevestigator:Q0PCS3 Uniprot:Q0PCS3
Length = 910
Score = 419 (152.6 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 109/346 (31%), Positives = 176/346 (50%)
Query: 719 SISAK-LKAHQVVGIRFMWENIIQSIRKVKSGDKGL-GCILAHTMGLGKTFQVIAFLYTA 776
S+ K L+ HQ G++FM++ + + G + GCILA MGLGKT Q I LYT
Sbjct: 174 SVLVKFLRPHQREGVQFMFD-CVSGLH----GSANINGCILADDMGLGKTLQSITLLYTL 228
Query: 777 MRSVNLG---LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK 833
+ G ++ A+IVTP +++ NW+ E KW ++ + + E D + + +
Sbjct: 229 LCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGDRIQ--LIALCESTRDDVLSGIDSF 286
Query: 834 WRAKGG--VFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRAD 891
R + V +I Y FR H + + C + + D+L+CDEAH +KN +
Sbjct: 287 TRPRSALQVLIISYETFR-----MH------SSKFCQS--ESCDLLICDEAHRLKNDQTL 333
Query: 892 TTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT 951
T +AL + C+RR+ L+G+P+QN+L E++ MV+F G LG + FR+ ++ PI G+
Sbjct: 334 TNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREP 393
Query: 952 NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRF 1011
+T E+ + RS L ++ F+ R ++ LPPK + V+ K++ LQ LY F
Sbjct: 394 TATEEEKNLAADRSAELSSKVNQFILRRTNALLSNHLPPKIIEVVCCKMTTLQSTLYNHF 453
Query: 1012 LDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYP 1057
+ N K K A AL ++ NHP ++ T G P
Sbjct: 454 ISSKNLKRALADNAKQTK-VLAYITALKKLCNHPKLIYDTIKSGNP 498
Score = 297 (109.6 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 80/220 (36%), Positives = 120/220 (54%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVF-SQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKD 1172
++ SGKM +L +L D +V S TLDL ++L R ++
Sbjct: 530 VELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLF----AQLCR--------ERRYP 577
Query: 1173 WYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1232
+ RLDG T S+RQKLV R N+P K L+S++AG G+NL ANR+++ D WNP
Sbjct: 578 FLRLDGSTTISKRQKLVNRLNDP-TKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPA 636
Query: 1233 YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT---- 1288
D QA R WR GQ K V+ YR ++ GT+EEK+Y+RQ++KEGL +V+ +Q +
Sbjct: 637 NDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQ-KVIQHEQTDNSTRQG 695
Query: 1289 --ISKEEMLHLFEF-GD--DENPDPLTAVSKENGQGSSQN 1323
+S E++ LF F GD E + ++ +N ++N
Sbjct: 696 NLLSTEDLRDLFSFHGDVRSEIHEKMSCSRCQNDASGTEN 735
Score = 48 (22.0 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 463 LEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVI 512
L +H +S +N+ A DN+ ++ L+ Y TA + HP I + I
Sbjct: 449 LYNHFISSKNLKRALADNAKQTKVLA---YITALKKLCN--HPKLIYDTI 493
Score = 42 (19.8 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 352 IEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERS 404
+E+ E D S + K D D G N+ ++L L S +S
Sbjct: 1 MEEEDEEILSSSDCDDSSDSYKDDSQDSEGENDNPECEDLAVVSLSSDADRKS 53
Score = 41 (19.5 bits), Expect = 1.8e-20, Sum P(3) = 1.8e-20
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 471 ENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCK 515
E + A D S S +F N + P I+ V+ CK
Sbjct: 397 EEEKNLAADRSAELSSKVNQFILRRTNALLSNHLPPKIIEVVCCK 441
>MGI|MGI:894697 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 MGI:MGI:894697 GO:GO:0005524 GO:GO:0005634
GO:GO:0042493 GO:GO:0003677 GO:GO:0010212 GO:GO:0000724
GO:GO:0004386 GO:GO:0051276 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
GO:GO:0036310 UniGene:Mm.3655 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:X97796 EMBL:AK088876 EMBL:BC021643 IPI:IPI00404187
RefSeq:NP_001116430.1 RefSeq:NP_001116431.1 RefSeq:NP_033041.3
ProteinModelPortal:P70270 SMR:P70270 STRING:P70270
PhosphoSite:P70270 PRIDE:P70270 Ensembl:ENSMUST00000102704
Ensembl:ENSMUST00000102705 GeneID:19366 KEGG:mmu:19366
InParanoid:P70270 NextBio:296441 Bgee:P70270 CleanEx:MM_RAD54L
Genevestigator:P70270 GermOnline:ENSMUSG00000028702 Uniprot:P70270
Length = 747
Score = 412 (150.1 bits), Expect = 2.5e-60, Sum P(2) = 2.5e-60
Identities = 104/348 (29%), Positives = 174/348 (50%)
Query: 707 REKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 766
+EK V + +S L+ HQ G++F+WE + R++ GCI+A MGLGKT
Sbjct: 136 KEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTS--RRIPGSH---GCIMADEMGLGKT 190
Query: 767 FQVIAFLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVS 823
Q I ++T +R + A++V+P +++ NW E KW ++PL +
Sbjct: 191 LQCITLMWTLLRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKWLGGRIQPLAIDGGSKDE 250
Query: 824 RDRRAELLAKWRAK---GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 880
DR+ E R + +I Y FR L G +K N+ +++CD
Sbjct: 251 IDRKLEGFMNQRGARVPSPILIISYETFR-LHVGV-LKKGNVG------------LVICD 296
Query: 881 EAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNR 940
E H +KN+ T QAL + RR+ ++G+P+QN+L+EY+ +V FV G LG++HEF+
Sbjct: 297 EGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKH 356
Query: 941 FQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKL 1000
F+ PI + ++ D + +R L + + R +++ K LP K V+ +L
Sbjct: 357 FELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 416
Query: 1001 SPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
+PLQ LYKRFL + + K+ S + +L ++ NHP ++
Sbjct: 417 TPLQTELYKRFLR-QAKPEEELREGKMSVSSLSSITSLKKLCNHPALI 463
Score = 291 (107.5 bits), Expect = 2.5e-60, Sum P(2) = 2.5e-60
Identities = 78/188 (41%), Positives = 108/188 (57%)
Query: 1113 ELDYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1171
E SGKM++L IL + S DK ++ S TLDL E KL R + L+
Sbjct: 491 EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFE----KLCRVRRY--LY---- 540
Query: 1172 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1231
RLDG +R K+VERFN P + ++S++AG G+NL ANR+++ D WNP
Sbjct: 541 --VRLDGTMSIKKRAKVVERFNSPSSPDF-VFMLSSKAGGCGLNLIGANRLVMFDPDWNP 597
Query: 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTIS 1290
D QA+ R WR GQ K + YRL++ GT+EEKI++RQ K+ L++ VVD +Q V R S
Sbjct: 598 ANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFS 657
Query: 1291 KEEMLHLF 1298
E+ LF
Sbjct: 658 LGELKELF 665
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 396 (144.5 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 111/346 (32%), Positives = 178/346 (51%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779
+S L+ HQ G+RFM+E + + K GD GCI+A MGLGKT Q + ++T +R
Sbjct: 155 LSNILRPHQREGVRFMYECV-----EGKKGDFN-GCIMADEMGLGKTLQCVTLVWTLLRQ 208
Query: 780 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA 836
+ A++V+P +++ NW++EF KW L L + + R E + +
Sbjct: 209 GPESKPTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLAMEGGTKENTIRVLEQFSMTSS 268
Query: 837 KGG--VFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQ 894
K G V LI Y FR + EI + G +++CDE H +KN+ T Q
Sbjct: 269 KLGTPVLLISYETFR------------IYAEILCKYEVG--MVICDEGHRLKNSDNLTYQ 314
Query: 895 ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST 954
AL +K +RR+ L+G+P+QN+L EY+ +V+FV LG++ +F+ F+N I GQ+ +ST
Sbjct: 315 ALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADST 374
Query: 955 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL 1014
+ K +++ L + + R ++ K LP K VI VKL+ +Q +LY FL+
Sbjct: 375 EGERKKAIEKTQELIGLVDQCIIRRTNQILTKYLPIKFEMVICVKLTAIQLQLYTNFLNS 434
Query: 1015 HGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGILQL---TKDKGY 1056
NEK + A L +I +HP ++ K+KG+
Sbjct: 435 DQVRRSLADCNEKASLTALADITTLKKICSHPDLIHQKIEAKEKGF 480
Score = 300 (110.7 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 86/260 (33%), Positives = 136/260 (52%)
Query: 1103 NDLLHEHTYKEL--DYSGKMVLLLDILTMCSNMG-DKSLVFSQSIPTLDLIEFYLSKLPR 1159
N L + KE+ ++SGK +LL +L G DK ++ S TLDL E +L R
Sbjct: 485 NVLPSNYKPKEICPEWSGKFMLLDFMLAAIRAAGNDKVVLISNYTQTLDLFE----QLAR 540
Query: 1160 PGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSA 1219
K G + RLDG +R K+V++FN+P + ++S++AG G+NL A
Sbjct: 541 KRKYG--------FVRLDGTMSIKKRSKVVDKFNDP-DSECFLFMLSSKAGGCGLNLIGA 591
Query: 1220 NRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARV 1279
NR+ + D WNP D QA+ R WR GQ KP + YRL+A GT+EEKI +RQ K+ L++ +
Sbjct: 592 NRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQRQTHKKSLSSTI 651
Query: 1280 VDRQQV-HRTISKEEMLHLFEFGD---DENPDPLTA---VSKENGQGSSQNTNCALKHKL 1332
+D + + +++++ LF F + + L V + S++T+C H
Sbjct: 652 IDNNESSEKHFTRDDLKDLFSFDQKILSDTHEKLKCKRCVQNIQTKPPSESTDCT-SHLS 710
Query: 1333 PLSHEGCSDK--LMESLLGK 1350
H CS+ L +S+L +
Sbjct: 711 QWYH--CSNNRGLPDSILAQ 728
Score = 37 (18.1 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 931 LGSSHEFRNRFQNPIENGQHTNSTSEDVKI 960
+G S RN F P+ ++ + +D+++
Sbjct: 11 IGQSTASRNAFTPPLLQKKNKRACQKDLRL 40
>UNIPROTKB|B4KHL5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7230 "Drosophila mojavensis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH933807 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002002852.1 EnsemblMetazoa:FBtr0161485
GeneID:6576868 KEGG:dmo:Dmoj_GI10760 FlyBase:FBgn0133523
InParanoid:B4KHL5 Uniprot:B4KHL5
Length = 783
Score = 399 (145.5 bits), Expect = 4.8e-59, Sum P(2) = 4.8e-59
Identities = 109/347 (31%), Positives = 179/347 (51%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q + +T +R
Sbjct: 145 LSNVLRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVTLTWTLLRQ 198
Query: 780 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF--MLEDVSRD-RRAELLAK 833
+ A+IV+P +++ NW++EF KW + L + ED +R + +
Sbjct: 199 SPDCKPTISKAIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRALEQFAMNTA 258
Query: 834 WRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTT 893
R V LI Y FR + H+ +C + G +++CDE H +KN+ T
Sbjct: 259 TRCGTPVLLISYETFRLYA---HI--------LCKT-EVG--MVICDEGHRLKNSDNLTY 304
Query: 894 QALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNS 953
QAL +K +RR+ L+G+P+QN+L EY+ +V+FV LG++ +F+ F+N I GQ+ +S
Sbjct: 305 QALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADS 364
Query: 954 TSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLD 1013
T + + Q++ L + + R ++ K LP K V+ VKL+P+Q ++Y FL
Sbjct: 365 TDAERQRALQKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCVKLTPVQLQIYTNFLK 424
Query: 1014 LHGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGILQ---LTKDKGY 1056
NEK + A L ++ NHP ++ K+KG+
Sbjct: 425 SDQVRRSLADCNEKASLTALADITTLKKLCNHPDLIYEKIAAKEKGF 471
Score = 294 (108.6 bits), Expect = 4.8e-59, Sum P(2) = 4.8e-59
Identities = 84/248 (33%), Positives = 130/248 (52%)
Query: 1115 DYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
+ SGK +LL +L +N DK ++ S TLDL E +L R K+ +
Sbjct: 490 ELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFE----QLAR--------KRKYTY 537
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTL--ISTRAGSLGINLHSANRVIIVDGSWNP 1231
RLDG +R K+V+RFN+P C L +S++AG G+NL ANR+ + D WNP
Sbjct: 538 VRLDGTMTIKKRSKVVDRFNDP---STDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNP 594
Query: 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV-HRTIS 1290
D QA+ R WR GQ KP + YRL+A G++EEKI +RQ K+ L++ ++D + + +
Sbjct: 595 ANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESSEKHFT 654
Query: 1291 KEEMLHLFEF-----GDDENPDPLTAVSKE-NGQGSSQNTNCALKHKLPLSHEGCSDK-- 1342
++++ LF F D N ++ Q ++NT+C H H CS+
Sbjct: 655 RDDLKDLFSFEANVLSDTHNKLKCKRCFQDVQRQPPAENTDCT-SHLSQWFH--CSNNRG 711
Query: 1343 LMESLLGK 1350
L +S+L +
Sbjct: 712 LPDSILSQ 719
>UNIPROTKB|B4MX21 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7260 "Drosophila willistoni" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH963857 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002065674.1 STRING:B4MX21 EnsemblMetazoa:FBtr0246224
GeneID:6642593 KEGG:dwi:Dwil_GK15573 FlyBase:FBgn0217578
InParanoid:B4MX21 Uniprot:B4MX21
Length = 784
Score = 391 (142.7 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 105/344 (30%), Positives = 181/344 (52%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779
+S L+ HQ G+RFM++ + + K G+ GCI+A MGLGKT Q + ++T +R
Sbjct: 149 LSNILRPHQREGVRFMYDCV-----EGKKGNFN-GCIMADEMGLGKTLQCVTLVWTLLRQ 202
Query: 780 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA 836
+ A+IV+P +++ NW++EF KW + L +E S++ + L ++
Sbjct: 203 SCECKPTITKAIIVSPSSLVKNWEKEFTKWLHGRMHCLA---MEGGSKEDTIKALEQFSM 259
Query: 837 KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQAL 896
L G T +S+ R A +C Q+ +++CDE H +KN+ T QAL
Sbjct: 260 NTSTRL-G-TPVLLISYETF---RIYANILC---QNEVGMVICDEGHRLKNSDNLTYQAL 311
Query: 897 KQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 956
+K +RR+ L+G+P+QN+L EY+ +V+FV LG++ +F+ F+NPI GQ+T+S+ +
Sbjct: 312 MGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDK 371
Query: 957 DVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHG 1016
+ + +++ L + + R ++ K LP K VI V+L+ +Q Y FL
Sbjct: 372 ERERALEKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVICVRLTSVQLEFYTNFLKSDK 431
Query: 1017 FTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL---QLTKDKGY 1056
NEK + A L ++ +HP ++ L +DKG+
Sbjct: 432 VRRSLADCNEKASLTALADITTLKKLCSHPDLIYEKMLARDKGF 475
Score = 302 (111.4 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 80/214 (37%), Positives = 120/214 (56%)
Query: 1093 DDGFFQKDWWNDLLHEHTYKEL--DYSGKMVLLLDIL-TMCSNMGDKSLVFSQSIPTLDL 1149
D GF N L + K+L + SGK +LL +L T+ +N DK ++ S TLDL
Sbjct: 472 DKGFENSQ--NILPTNYKPKDLNPELSGKFMLLDFMLATIRANSDDKVVLISNYTQTLDL 529
Query: 1150 IEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTL--IST 1207
E +L R K+ + RLDG +R K+V+RFN+P N C L +S+
Sbjct: 530 FE----QLAR--------KRKYTFVRLDGTMTIKKRSKVVDRFNDPEND---CFLFMLSS 574
Query: 1208 RAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 1267
+AG G+NL ANR+ + D WNP D QA+ R WR GQ KP + YRL+A G++EEKI +
Sbjct: 575 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 634
Query: 1268 RQVTKEGLAARVVDRQQ-VHRTISKEEMLHLFEF 1300
RQ K+ L++ ++D + + +++++ LF F
Sbjct: 635 RQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFSF 668
Score = 302 (111.4 bits), Expect = 3.8e-49, Sum P(2) = 3.8e-49
Identities = 100/355 (28%), Positives = 169/355 (47%)
Query: 749 GDKGL--GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK- 805
G KG GCI+A MGLGKT Q + ++T +R +T ++ +K
Sbjct: 170 GKKGNFNGCIMADEMGLGKTLQCVTLVWTLLRQ---SCECKPTITKAIIVS--PSSLVKN 224
Query: 806 WRPSELKPLRVFM----LEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRN 861
W K L M +E S++ + L ++ L G T +S+ R
Sbjct: 225 WEKEFTKWLHGRMHCLAMEGGSKEDTIKALEQFSMNTSTRL-G-TPVLLISYETF---RI 279
Query: 862 MAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYC 921
A +C Q+ +++CDE H +KN+ T QAL +K +RR+ L+G+P+QN+L EY+
Sbjct: 280 YANILC---QNEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFS 336
Query: 922 MVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDM 981
+V+FV LG++ +F+ F+NPI GQ+T+S+ ++ + +++ L + + R
Sbjct: 337 LVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDKERERALEKTQELIGLVNQCIIRRTN 396
Query: 982 NVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVS-NEKIRKSFFAGYQALAQ 1040
++ K LP K VI V+L+ +Q Y FL NEK + A L +
Sbjct: 397 QILTKYLPVKFEMVICVRLTSVQLEFYTNFLKSDKVRRSLADCNEKASLTALADITTLKK 456
Query: 1041 IWNHPGIL---QLTKDKGYPSRXXXXXXXXXXNMDYNVV-IGEKPRNMNDFLQGK 1091
+ +HP ++ L +DKG+ + N++ KP+++N L GK
Sbjct: 457 LCSHPDLIYEKMLARDKGFEN-------------SQNILPTNYKPKDLNPELSGK 498
Score = 39 (18.8 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 553 KTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS-LLKRLTSE 595
KTL C T V + ++C E + + + SPS L+K E
Sbjct: 188 KTLQCVTLVWTLLRQSC---ECKPTITKAIIVSPSSLVKNWEKE 228
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 388 (141.6 bits), Expect = 7.2e-59, Sum P(2) = 7.2e-59
Identities = 107/348 (30%), Positives = 183/348 (52%)
Query: 713 AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF 772
AV I ++ L+ HQ+ G++F+++ + I + +G CI+A MGLGKT Q IA
Sbjct: 253 AVVIDPKLARILRPHQIEGVKFLYKCVTGRIDRCANG-----CIMADEMGLGKTLQCIAL 307
Query: 773 LYTAMR-SVNLGLRT---ALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 828
L+T ++ S G T A+I P +++ NW E +KW + + F+L+ + +
Sbjct: 308 LWTLLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDA--ITPFILD--GKSSKQ 363
Query: 829 ELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNT 888
EL+ + V G R + + R+ + +A + G +L+CDE H +KN+
Sbjct: 364 ELIMALQQWASVH--GRQVTRPVLIASYETLRSYVEHLNNA-EIG--MLLCDEGHRLKNS 418
Query: 889 RADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENG 948
+ T AL ++ QRR+ L+G+P+QN+L EY+ +++F G LGS EFR ++ PI G
Sbjct: 419 DSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKG 478
Query: 949 QHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLY 1008
+ + T +D + + + L + + F+ R +++ K LP K V+ LS Q LY
Sbjct: 479 RDADGTEKDKENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLY 538
Query: 1009 KRFLDLHGFTNDRVSNEKIRKSFFAGYQA---LAQIWNHPGILQLTKD 1053
K F+ T+ + N+ +R + +A L +I NHP +L LT+D
Sbjct: 539 KHFI-----TSPEI-NKILRGTGSQPLKAIGLLKKICNHPDLLNLTED 580
Score = 306 (112.8 bits), Expect = 7.2e-59, Sum P(2) = 7.2e-59
Identities = 78/188 (41%), Positives = 106/188 (56%)
Query: 1117 SGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYR 1175
SGKM++L +L DK ++ S TLDL E +L R +G R
Sbjct: 609 SGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFE----QLCRA--------RGYKALR 656
Query: 1176 LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1235
LDG ++RQ+LV+ FN+P K L+S++AG GINL ANR+I+ D WNP D
Sbjct: 657 LDGTMNVNKRQRLVDTFNDP-EKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQ 715
Query: 1236 QAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-QQVHRTISKEEM 1294
QA+ R WR GQ K F YR +A GT+EEKI++RQ K+ L++ VVD Q V R S + +
Sbjct: 716 QALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERHFSLDNL 775
Query: 1295 LHLFEFGD 1302
LF+ D
Sbjct: 776 RQLFQLND 783
Score = 41 (19.5 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQ 1163
GD S + PTLD IE +L K GKQ
Sbjct: 813 GDTSTWNHFTNPTLDRIEDHLLKR-EAGKQ 841
Score = 37 (18.1 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 290 PFVADAIANEKELALSEEQ 308
PF+ D ++++EL ++ +Q
Sbjct: 353 PFILDGKSSKQELIMALQQ 371
>CGD|CAL0001568 [details] [associations]
symbol:RAD54 species:5476 "Candida albicans" [GO:0007067
"mitosis" evidence=IMP] [GO:0000085 "G2 phase of mitotic cell
cycle" evidence=IMP] [GO:0006997 "nucleus organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0032392 "DNA geometric
change" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0032079 "positive regulation of endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001568 GO:GO:0005524
GO:GO:0007067 GO:GO:0003677 GO:GO:0000085 GO:GO:0004386
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006997
KO:K10875 RefSeq:XP_722208.1 RefSeq:XP_722322.1
ProteinModelPortal:Q5AKX3 STRING:Q5AKX3 GeneID:3636027
GeneID:3636192 KEGG:cal:CaO19.12471 KEGG:cal:CaO19.5004
Uniprot:Q5AKX3
Length = 848
Score = 376 (137.4 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 108/377 (28%), Positives = 188/377 (49%)
Query: 698 ITGYIVNVVREKGEEAVRIPSSISAKL----KAHQVVGIRFMWENIIQSIRKVKSGDKGL 753
I G + N EK + +P I KL + HQ+ G++F++ I +
Sbjct: 227 ILGIVTNP-EEKLSKYPDVPVVIDPKLAKILRPHQIAGVKFLYRCTAGLIDA-----RAK 280
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRT---ALIVTPVNVLHNWKQEFMKWR-PS 809
GCI+A MGLGKT Q + ++T +R G RT +IV P +++ NW E +KW
Sbjct: 281 GCIMADEMGLGKTLQCLTLMWTLLRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEG 340
Query: 810 ELKPLRVFMLEDVSRDRRAEL---LAKWRAKGG------VFLIGYTAFRNLSFGKHVKDR 860
L PL V D + +EL L +W G V +I Y R ++V D+
Sbjct: 341 ALTPLAV----DGKSTKNSELGTALQQWSTAQGRNIVRPVLIISYETLR-----RNV-DK 390
Query: 861 NMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYY 920
E+ +++ DE H +KN + T AL ++C+RR+ L+G+P+QN+L EY+
Sbjct: 391 LAGTEV--------GLMLADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYF 442
Query: 921 CMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMD 980
+++F G+LG+ EF+ ++N I G+ + ++ E+ + +++ + L + + F+ R
Sbjct: 443 SLLNFANPGYLGTRIEFKKNYENAILKGRDSTASDEEREKGDKKLNELSQMVSKFIIRRT 502
Query: 981 MNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF----FAGYQ 1036
+++ K LP K +V+ LSP+Q+ +Y F+ T+ + +K+ K
Sbjct: 503 NDILSKYLPIKYEYVLFTGLSPMQKDIYNHFI-----TSPEI--KKLMKGTGSQPLKAIG 555
Query: 1037 ALAQIWNHPGILQLTKD 1053
L ++ NHP +L L +D
Sbjct: 556 MLKKLCNHPDLLDLPED 572
Score = 316 (116.3 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 80/194 (41%), Positives = 111/194 (57%)
Query: 1116 YSGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1174
+SGK ++L L + DK ++ S TLDLIE K+ R K G L
Sbjct: 603 FSGKFLILERFLQKINKETDDKIVLISNYTQTLDLIE----KMCRYKKYGVL-------- 650
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG ++RQKLV++FN+P N L+S++AG GINL ANR++++D WNP D
Sbjct: 651 RLDGTMNINKRQKLVDKFNDP-NGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASD 709
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD-RQQVHRTISKEE 1293
QA+ R WR GQ K F YR ++ GT+EEKI++RQ K L++ VVD ++ V R S
Sbjct: 710 QQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDEKEDVERLFSVAN 769
Query: 1294 MLHLFEFGDDENPD 1307
+ LF+F D D
Sbjct: 770 LRQLFKFQPDTQCD 783
>UNIPROTKB|Q5AKX3 [details] [associations]
symbol:RAD54 "Putative uncharacterized protein RAD54"
species:237561 "Candida albicans SC5314" [GO:0000085 "G2 phase of
mitotic cell cycle" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001568 GO:GO:0005524 GO:GO:0007067
GO:GO:0003677 GO:GO:0000085 GO:GO:0004386 EMBL:AACQ01000010
EMBL:AACQ01000009 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006997 KO:K10875 RefSeq:XP_722208.1
RefSeq:XP_722322.1 ProteinModelPortal:Q5AKX3 STRING:Q5AKX3
GeneID:3636027 GeneID:3636192 KEGG:cal:CaO19.12471
KEGG:cal:CaO19.5004 Uniprot:Q5AKX3
Length = 848
Score = 376 (137.4 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 108/377 (28%), Positives = 188/377 (49%)
Query: 698 ITGYIVNVVREKGEEAVRIPSSISAKL----KAHQVVGIRFMWENIIQSIRKVKSGDKGL 753
I G + N EK + +P I KL + HQ+ G++F++ I +
Sbjct: 227 ILGIVTNP-EEKLSKYPDVPVVIDPKLAKILRPHQIAGVKFLYRCTAGLIDA-----RAK 280
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRT---ALIVTPVNVLHNWKQEFMKWR-PS 809
GCI+A MGLGKT Q + ++T +R G RT +IV P +++ NW E +KW
Sbjct: 281 GCIMADEMGLGKTLQCLTLMWTLLRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEG 340
Query: 810 ELKPLRVFMLEDVSRDRRAEL---LAKWRAKGG------VFLIGYTAFRNLSFGKHVKDR 860
L PL V D + +EL L +W G V +I Y R ++V D+
Sbjct: 341 ALTPLAV----DGKSTKNSELGTALQQWSTAQGRNIVRPVLIISYETLR-----RNV-DK 390
Query: 861 NMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYY 920
E+ +++ DE H +KN + T AL ++C+RR+ L+G+P+QN+L EY+
Sbjct: 391 LAGTEV--------GLMLADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYF 442
Query: 921 CMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMD 980
+++F G+LG+ EF+ ++N I G+ + ++ E+ + +++ + L + + F+ R
Sbjct: 443 SLLNFANPGYLGTRIEFKKNYENAILKGRDSTASDEEREKGDKKLNELSQMVSKFIIRRT 502
Query: 981 MNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF----FAGYQ 1036
+++ K LP K +V+ LSP+Q+ +Y F+ T+ + +K+ K
Sbjct: 503 NDILSKYLPIKYEYVLFTGLSPMQKDIYNHFI-----TSPEI--KKLMKGTGSQPLKAIG 555
Query: 1037 ALAQIWNHPGILQLTKD 1053
L ++ NHP +L L +D
Sbjct: 556 MLKKLCNHPDLLDLPED 572
Score = 316 (116.3 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 80/194 (41%), Positives = 111/194 (57%)
Query: 1116 YSGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1174
+SGK ++L L + DK ++ S TLDLIE K+ R K G L
Sbjct: 603 FSGKFLILERFLQKINKETDDKIVLISNYTQTLDLIE----KMCRYKKYGVL-------- 650
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG ++RQKLV++FN+P N L+S++AG GINL ANR++++D WNP D
Sbjct: 651 RLDGTMNINKRQKLVDKFNDP-NGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASD 709
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD-RQQVHRTISKEE 1293
QA+ R WR GQ K F YR ++ GT+EEKI++RQ K L++ VVD ++ V R S
Sbjct: 710 QQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDEKEDVERLFSVAN 769
Query: 1294 MLHLFEFGDDENPD 1307
+ LF+F D D
Sbjct: 770 LRQLFKFQPDTQCD 783
>WB|WBGene00004298 [details] [associations]
symbol:rad-54 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0033554 GO:GO:0003677 GO:GO:0004386
EMBL:AL034364 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG EMBL:AL110471
PIR:T26238 RefSeq:NP_492438.1 ProteinModelPortal:G5EEN6 SMR:G5EEN6
IntAct:G5EEN6 EnsemblMetazoa:W06D4.6 GeneID:172728
KEGG:cel:CELE_W06D4.6 CTD:172728 WormBase:W06D4.6 NextBio:876761
Uniprot:G5EEN6
Length = 818
Score = 384 (140.2 bits), Expect = 6.8e-58, Sum P(2) = 6.8e-58
Identities = 104/329 (31%), Positives = 169/329 (51%)
Query: 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG 783
L+ HQ G++FMW+ + I + GCI+A MGLGKT Q I+ L+T +R
Sbjct: 202 LRPHQRDGVKFMWD-CVTGINIPEFH----GCIMADEMGLGKTLQCISLLWTLLRQSPDA 256
Query: 784 LRT---ALIVTPVNVLHNWKQEFMKWRPSELK--PLRVFMLEDVSRDRRAELL-AKWRAK 837
T ++IV P +++ NW +E KW + L P+ E + + + +K R
Sbjct: 257 CPTVSKSIIVCPSSLVKNWDKEIKKWLGTRLNAMPVDSGKREQIIACLNSFMADSKMRCA 316
Query: 838 GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALK 897
V +I Y FR + I H+ G I++CDE H +KN+ T QAL
Sbjct: 317 IPVLIISYETFR------------LYANILHSGDVG--IVICDEGHRLKNSENLTYQALS 362
Query: 898 QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 957
+KC RR+ ++G+P+QN+L+EY+ +V+FV G LG++ EFR +F+N I G+ +++SED
Sbjct: 363 GLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGTASEFRKKFENAILKGRDADASSED 422
Query: 958 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGF 1017
K +++ + ++ + R ++ K LP K +I K S LQ LY + ++
Sbjct: 423 QKKGEEKTKEMISLVEKCIIRRTSALLTKYLPVKYEHIICCKNSTLQETLYNKLIECEK- 481
Query: 1018 TNDRVSNEK-IRKSFFAGYQALAQIWNHP 1045
N V +K S + L ++ NHP
Sbjct: 482 QNRIVEKDKGATASALSFITHLKKLCNHP 510
Score = 300 (110.7 bits), Expect = 6.8e-58, Sum P(2) = 6.8e-58
Identities = 73/186 (39%), Positives = 108/186 (58%)
Query: 1116 YSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1174
+SGKM +L IL + DK ++ S T+D L KL +G D+
Sbjct: 545 FSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQF-MELCKL-----------RGYDFV 592
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG +R K+V+ FN+P + + C L+S++AG G+NL ANR+++ D WNP D
Sbjct: 593 RLDGSMSIKQRSKIVDTFNDPAST-IFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPAND 651
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-QQVHRTISKEE 1293
QA+ R WR GQ K F YRL+A G++EEK+++RQ K+ L++ VVD + V R S E+
Sbjct: 652 DQAMARVWRDGQKKMCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDAGEDVARHFSSEQ 711
Query: 1294 MLHLFE 1299
+ LF+
Sbjct: 712 LRELFK 717
>UNIPROTKB|B3NAN8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7220 "Drosophila erecta" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH954177
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001968502.1
EnsemblMetazoa:FBtr0144523 GeneID:6543248 KEGG:der:Dere_GG24469
FlyBase:FBgn0116601 Uniprot:B3NAN8
Length = 784
Score = 384 (140.2 bits), Expect = 6.8e-58, Sum P(2) = 6.8e-58
Identities = 112/350 (32%), Positives = 176/350 (50%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q + ++T +R
Sbjct: 152 LSNILRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVTLVWTLLRQ 205
Query: 780 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK--PLRVFMLEDVSRDRRAELLAKW 834
+ A++V+P +++ NW++EF KW L P+ E+ R +
Sbjct: 206 GPECKPTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSS 265
Query: 835 RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQ 894
R V LI Y FR + EI + G +++CDE H +KN+ T Q
Sbjct: 266 RLGTPVLLISYETFR------------IYAEILCKYEVG--MVICDEGHRLKNSDNLTYQ 311
Query: 895 ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST 954
AL +K +RR+ L+G+P+QN+L EYY +V+FV LG++ F+ F++ I GQ+T+ST
Sbjct: 312 ALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDST 371
Query: 955 SEDVKIMNQRSHILYEQLKGFVQ----RMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKR 1010
+ QR+ ++L G V R ++ K LP K VI KL+ +Q LY
Sbjct: 372 DAE----RQRAIAKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTSIQLELYTN 427
Query: 1011 FLDLHGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL--QLT-KDKGY 1056
FL EK + A L +I +HP ++ ++T +DKG+
Sbjct: 428 FLKSDQVRRSLADCKEKASLTALADITTLKKICSHPNLIYEKITARDKGF 477
Score = 299 (110.3 bits), Expect = 6.8e-58, Sum P(2) = 6.8e-58
Identities = 78/215 (36%), Positives = 117/215 (54%)
Query: 1093 DDGFFQKDWWNDLLHEHTYKEL--DYSGKMVLLLDILTMCSNMG-DKSLVFSQSIPTLDL 1149
D GF N L + K+L + SGK +LL +L G DK ++ S TLDL
Sbjct: 474 DKGFENSQ--NVLPSNYNAKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDL 531
Query: 1150 IEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA 1209
E +L R K G + RLDG +R K+V+RFN+P + ++S++A
Sbjct: 532 FE----QLARKRKYG--------FVRLDGTMSIKKRSKVVDRFNDPESDSF-LFMLSSKA 578
Query: 1210 GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQ 1269
G G+NL ANR+ + D WNP D QA+ R WR GQ KP + YRL+A G++EEKI +RQ
Sbjct: 579 GGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQ 638
Query: 1270 VTKEGLAARVVDRQQ-VHRTISKEEMLHLFEFGDD 1303
K+ L++ ++D + + +++++ LF F D
Sbjct: 639 THKKSLSSTIIDNNESAEKHFTRDDLKDLFTFDAD 673
>FB|FBgn0002989 [details] [associations]
symbol:okr "okra" species:7227 "Drosophila melanogaster"
[GO:0046843 "dorsal appendage formation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IGI;IMP;TAS] [GO:0006302 "double-strand break
repair" evidence=IMP;TAS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=TAS] [GO:0006417 "regulation of translation" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0030261 "chromosome condensation" evidence=TAS] [GO:0006281
"DNA repair" evidence=NAS] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0045003
"double-strand break repair via synthesis-dependent strand
annealing" evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006417 GO:GO:0051301 GO:GO:0007067 EMBL:AE014134
GO:GO:0003677 GO:GO:0010212 GO:GO:0006338 GO:GO:0004386
GO:GO:0030261 GO:GO:0008298 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0046843 GO:GO:0007131
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG EMBL:Y10229
EMBL:AF069779 EMBL:AF069780 EMBL:AY069599 EMBL:FJ219215
EMBL:FJ219218 EMBL:FJ219219 EMBL:FJ219220 EMBL:FJ219221
EMBL:FJ219222 EMBL:FJ219223 EMBL:FJ219224 EMBL:FJ219225
EMBL:FJ219226 EMBL:FJ219227 EMBL:FJ219228 EMBL:FJ219229
EMBL:FJ219230 EMBL:FJ219231 EMBL:FJ219232 EMBL:FJ219233
EMBL:FJ219234 EMBL:FJ219235 EMBL:FJ219236 EMBL:FJ219237
EMBL:FJ219238 EMBL:FJ219239 EMBL:FJ219240 EMBL:FJ219241
EMBL:FJ219242 EMBL:FJ219243 EMBL:FJ219244 EMBL:FJ219245
EMBL:FJ219246 EMBL:FJ219247 RefSeq:NP_476661.1 UniGene:Dm.19774
ProteinModelPortal:O76460 SMR:O76460 IntAct:O76460 MINT:MINT-807919
STRING:O76460 PRIDE:O76460 EnsemblMetazoa:FBtr0077673 GeneID:33507
KEGG:dme:Dmel_CG3736 UCSC:CG3736-RA CTD:33507 FlyBase:FBgn0002989
InParanoid:O76460 PhylomeDB:O76460 GenomeRNAi:33507 NextBio:783944
Bgee:O76460 Uniprot:O76460
Length = 784
Score = 389 (142.0 bits), Expect = 1.0e-57, Sum P(2) = 1.0e-57
Identities = 109/346 (31%), Positives = 177/346 (51%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q + ++T +R
Sbjct: 152 LSNILRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVTLVWTLLRQ 205
Query: 780 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK--PLRVFMLEDVSRDRRAELLAKW 834
+ A++V+P +++ NW++EF KW L P+ E+ R +
Sbjct: 206 GPECKPTINKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSA 265
Query: 835 RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQ 894
R V LI Y FR + EI + G +++CDE H +KN+ T Q
Sbjct: 266 RLGTPVLLISYETFR------------IYAEILCKYEVG--MVICDEGHRLKNSDNLTYQ 311
Query: 895 ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST 954
AL +K +RR+ L+G+P+QN+L EYY +V+FV LG++ F+ F++ I GQ+T+ST
Sbjct: 312 ALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDST 371
Query: 955 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL 1014
++ + +++ L + + R ++ K LP K VI KL+ +Q LY FL
Sbjct: 372 EQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKS 431
Query: 1015 HGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL--QLT-KDKGY 1056
NEK + A L +I +HP ++ +LT ++KG+
Sbjct: 432 DQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTAREKGF 477
Score = 292 (107.8 bits), Expect = 1.0e-57, Sum P(2) = 1.0e-57
Identities = 74/202 (36%), Positives = 113/202 (55%)
Query: 1103 NDLLHEHTYKEL--DYSGKMVLLLDILTMCSNMG-DKSLVFSQSIPTLDLIEFYLSKLPR 1159
N L + K+L + SGK +LL +L G DK ++ S TLDL E +L R
Sbjct: 482 NVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFE----QLAR 537
Query: 1160 PGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSA 1219
K G + RLDG +R K+V+RFN+P + ++S++AG G+NL A
Sbjct: 538 KRKYG--------FVRLDGTMSIKKRSKVVDRFNDPESDSF-LFMLSSKAGGCGLNLIGA 588
Query: 1220 NRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARV 1279
NR+ + D WNP D QA+ R WR GQ KP + YRL+A G++EEKI +RQ K+ L++ +
Sbjct: 589 NRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTI 648
Query: 1280 VDRQQ-VHRTISKEEMLHLFEF 1300
+D + + +++++ LF F
Sbjct: 649 IDNNESAEKHFTRDDLKDLFTF 670
Score = 263 (97.6 bits), Expect = 6.0e-44, Sum P(2) = 6.0e-44
Identities = 70/221 (31%), Positives = 117/221 (52%)
Query: 876 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
+++CDE H +KN+ T QAL +K +RR+ L+G+P+QN+L EYY +V+FV LG++
Sbjct: 293 MVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAA 352
Query: 936 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 995
F+ F++ I GQ+T+ST ++ + +++ L + + R ++ K LP K V
Sbjct: 353 VFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMV 412
Query: 996 ITVKLSPLQRRLYKRFLDLHGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL--QLT- 1051
I KL+ +Q LY FL NEK + A L +I +HP ++ +LT
Sbjct: 413 ICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTA 472
Query: 1052 KDKGYPSRXXXXXXXXXXNMDYNVVIGE-KPRNMNDFLQGK 1091
++KG+ + NV+ KP+++N L GK
Sbjct: 473 REKGFEN-------------SQNVLPSNYKPKDLNPELSGK 500
>UNIPROTKB|B4NXB8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7245 "Drosophila yakuba" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CM000157
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872
EMBL:FJ219212 RefSeq:XP_002087763.1 STRING:B4NXB8 GeneID:6526655
KEGG:dya:Dyak_GE14966 FlyBase:FBgn0232556 Uniprot:B4NXB8
Length = 784
Score = 384 (140.2 bits), Expect = 2.3e-57, Sum P(2) = 2.3e-57
Identities = 108/346 (31%), Positives = 176/346 (50%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q + ++T +R
Sbjct: 152 LSNILRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVTLVWTLLRQ 205
Query: 780 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK--PLRVFMLEDVSRDRRAELLAKW 834
+ A++V+P +++ NW++EF KW L P+ E+ R +
Sbjct: 206 GPECKPTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSS 265
Query: 835 RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQ 894
R V LI Y FR + EI + G +++CDE H +KN+ T Q
Sbjct: 266 RLGTPVLLISYETFR------------IYAEILCKYEVG--MVICDEGHRLKNSDNLTYQ 311
Query: 895 ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST 954
AL +K +RR+ L+G+P+QN+L EYY +V+FV LG++ F+ F++ I GQ+T+ST
Sbjct: 312 ALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDST 371
Query: 955 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL 1014
+ + +++ L + + R ++ K LP K VI KL+ +Q LY FL
Sbjct: 372 EGERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTSIQLELYTNFLKS 431
Query: 1015 HGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL--QLT-KDKGY 1056
NEK + A L +I +HP ++ ++T ++KG+
Sbjct: 432 DQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKITAREKGF 477
Score = 294 (108.6 bits), Expect = 2.3e-57, Sum P(2) = 2.3e-57
Identities = 74/205 (36%), Positives = 114/205 (55%)
Query: 1103 NDLLHEHTYKEL--DYSGKMVLLLDILTMCSNMG-DKSLVFSQSIPTLDLIEFYLSKLPR 1159
N L + K+L + SGK +LL +L G DK ++ S TLDL E +L R
Sbjct: 482 NVLPSNYNTKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLFE----QLAR 537
Query: 1160 PGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSA 1219
K G + RLDG +R K+V+RFN+P + ++S++AG G+NL A
Sbjct: 538 KRKYG--------FVRLDGTMSIKKRSKVVDRFNDPESDSF-LFMLSSKAGGCGLNLIGA 588
Query: 1220 NRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARV 1279
NR+ + D WNP D QA+ R WR GQ KP + YR++A G++EEKI +RQ K+ L++ +
Sbjct: 589 NRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRMVASGSIEEKILQRQTHKKSLSSTI 648
Query: 1280 VDRQQ-VHRTISKEEMLHLFEFGDD 1303
+D + + +++++ LF F D
Sbjct: 649 IDNNESAEKHFTRDDLKDLFTFDAD 673
>UNIPROTKB|B4JCS7 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7222 "Drosophila grimshawi" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 EMBL:CH916368
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001988299.1
STRING:B4JCS7 EnsemblMetazoa:FBtr0146056 GeneID:6562163
KEGG:dgr:Dgri_GH10642 FlyBase:FBgn0118123 InParanoid:B4JCS7
OMA:TYQALMG Uniprot:B4JCS7
Length = 786
Score = 374 (136.7 bits), Expect = 1.9e-56, Sum P(2) = 1.9e-56
Identities = 106/351 (30%), Positives = 180/351 (51%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMR- 778
+S L+ HQ G+RFM+E + + K G GCI+A MGLGKT Q + +T +R
Sbjct: 145 LSNVLRPHQREGVRFMYECV-----EGKRGSFN-GCIMADEMGLGKTLQCVTLTWTLLRQ 198
Query: 779 SVNLG--LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF--MLEDVSRD-RRAELLAK 833
S + + A++V+P +++ NW++EF KW + L + E+ +R + +
Sbjct: 199 SADCKPTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEETTRTLEQFAMNTS 258
Query: 834 WRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTT 893
R V LI Y FR + H+ +C + G +++CDE H +KN+ T
Sbjct: 259 TRCGTPVLLISYETFRLYA---HI--------LCKT-EVG--MVICDEGHRLKNSDNLTY 304
Query: 894 QALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNS 953
QAL +K +RR+ L+G+P+QN+L EY+ +V+FV LG++ +F+ F+N I GQ+ +S
Sbjct: 305 QALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENAILRGQNADS 364
Query: 954 TSEDVKIMNQRSHILYEQLKGFVQ----RMDMNVVKKDLPPKTVFVITVKLSPLQRRLYK 1009
T + +R+ + ++L G V R ++ K LP K V+ KL+ +Q ++Y
Sbjct: 365 TDTE----RERALLKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQLQIYT 420
Query: 1010 RFLDLHGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGILQ---LTKDKGY 1056
FL NEK + + L ++ NHP ++ ++KG+
Sbjct: 421 NFLKSDQVCRSLADCNEKTSLTALSDITTLKKLCNHPDLIYEKLAAREKGF 471
Score = 296 (109.3 bits), Expect = 1.9e-56, Sum P(2) = 1.9e-56
Identities = 72/190 (37%), Positives = 110/190 (57%)
Query: 1115 DYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
+ SGK +LL +L +N DK ++ S TLDL E +L R K+ +
Sbjct: 490 ELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFE----QLAR--------KRKYSY 537
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTL--ISTRAGSLGINLHSANRVIIVDGSWNP 1231
RLDG +R K+V+RFN+P + C L +S++AG G+NL ANR+ + D WNP
Sbjct: 538 VRLDGTMTIKKRSKVVDRFNDPSSD---CFLFMLSSKAGGCGLNLIGANRLFMFDPDWNP 594
Query: 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTIS 1290
D QA+ R WR GQ KP + YRL+A G++EEKI +RQ K+ L++ ++D + V + +
Sbjct: 595 ANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESVEKHFT 654
Query: 1291 KEEMLHLFEF 1300
++++ LF F
Sbjct: 655 RDDLKDLFSF 664
>UNIPROTKB|B4M9A8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7244 "Drosophila virilis" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH940654
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002057711.1 STRING:B4M9A8 EnsemblMetazoa:FBtr0234205
GeneID:6634100 KEGG:dvi:Dvir_GJ18280 FlyBase:FBgn0205441
InParanoid:B4M9A8 Uniprot:B4M9A8
Length = 786
Score = 377 (137.8 bits), Expect = 3.7e-56, Sum P(2) = 3.7e-56
Identities = 104/347 (29%), Positives = 175/347 (50%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q + +T +R
Sbjct: 145 LSNVLRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVTLTWTLLRQ 198
Query: 780 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF--MLEDVSRD-RRAELLAK 833
+ A++V+P +++ NW++EF KW + L + ED +R + +
Sbjct: 199 SPDCKPTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRTLEQFAMNTA 258
Query: 834 WRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTT 893
R V LI Y FR S H+ +C + G +++CDE H +KN+ T
Sbjct: 259 TRCGTPVLLISYETFRLYS---HI--------LCKT-EVG--MVICDEGHRLKNSDNLTY 304
Query: 894 QALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNS 953
QAL +K +RR+ L+G+P+QN+L EY+ +V+FV LG+ +F+ F+N I GQ+ +S
Sbjct: 305 QALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTGSDFKRNFENAILRGQNADS 364
Query: 954 TSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLD 1013
T + + +++ L + + R ++ K LP K V+ KL+ +Q +LY FL
Sbjct: 365 TDAERERALEKTQELVGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQLQLYTNFLK 424
Query: 1014 LHGFTNDRVS-NEKIRKSFFAGYQALAQIWNHPGILQ---LTKDKGY 1056
+K + A L ++ NHP ++ ++KG+
Sbjct: 425 SDQVRRSLADCTDKTTLTALADITTLKKLCNHPDLIYEKIAAREKGF 471
Score = 290 (107.1 bits), Expect = 3.7e-56, Sum P(2) = 3.7e-56
Identities = 71/190 (37%), Positives = 107/190 (56%)
Query: 1115 DYSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
+ SGK +LL +L +N DK ++ S TLDL E +L R K+ +
Sbjct: 490 ELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFE----QLAR--------KRKYSY 537
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTL--ISTRAGSLGINLHSANRVIIVDGSWNP 1231
RLDG +R K+V+RFN+P C L +S++AG G+NL ANR+ + D WNP
Sbjct: 538 VRLDGTMTIKKRSKVVDRFNDPATD---CFLFMLSSKAGGCGLNLIGANRLFMFDPDWNP 594
Query: 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTIS 1290
D QA+ R WR GQ KP + YRL+A G++EEKI +RQ K+ L++ ++D + +
Sbjct: 595 ANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSSIIDNNDSAEKHFT 654
Query: 1291 KEEMLHLFEF 1300
++++ LF F
Sbjct: 655 RDDLKDLFRF 664
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 285 (105.4 bits), Expect = 4.0e-56, Sum P(3) = 4.0e-56
Identities = 73/211 (34%), Positives = 116/211 (54%)
Query: 1097 FQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSK 1156
F +D+ +D T+ E+D SGK+ +L+ +L + S + L+ Y
Sbjct: 634 FPQDYTSD-----TFSEID-SGKLQVLVKLLAAIRELS------SSERQVVVLVSNYTQT 681
Query: 1157 LPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINL 1216
L + K + G + RLDG T S+RQ++V+ FN + L+S++AG +G+NL
Sbjct: 682 LNVLQETCKCY--GYSYTRLDGNTPVSQRQQIVDSFNSKFSPAF-IFLLSSKAGGVGLNL 738
Query: 1217 HSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA 1276
A+ +I+ D WNP D+QA+ R WR GQ V YRL+ GT+EEKIY+RQ++K+ L+
Sbjct: 739 VGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLS 798
Query: 1277 ARVVDRQQV--HRTISKEEMLHLFEFGDDEN 1305
VVD + H S EE+ +LF ++ +
Sbjct: 799 GAVVDLSKTSEHIHFSVEELRNLFTLHENSS 829
Score = 272 (100.8 bits), Expect = 4.0e-56, Sum P(3) = 4.0e-56
Identities = 64/185 (34%), Positives = 103/185 (55%)
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
++L+CDE H +KN+ TT AL + C+RRI LTG+P+QN+L E+Y +++FV G LGS
Sbjct: 433 NLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQEFYALIEFVNPGVLGSL 492
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTV 993
+R ++ PI + ++T E+ + +R+ L +L G F+ R V+ K LPPK
Sbjct: 493 STYRKIYEEPIVRSREPSATKEEKDLGEKRAAEL-TRLTGLFILRRTQEVINKFLPPKKE 551
Query: 994 FVITVKLSPLQRRLYKRFLD---LHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL-Q 1049
+I + + LQ LY++ L + R+ N G AL ++ NHP +L +
Sbjct: 552 NIIFCQPTALQLELYQKLLSSRVISSCLQGRLENSP--HLICIG--ALKKLCNHPCLLFK 607
Query: 1050 LTKDK 1054
K+K
Sbjct: 608 ALKEK 612
Score = 167 (63.8 bits), Expect = 4.0e-56, Sum P(3) = 4.0e-56
Identities = 47/114 (41%), Positives = 66/114 (57%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779
I+ L+ HQ GI F++E + +R SG G ILA MGLGKT Q I+ ++T +R
Sbjct: 299 IANNLRPHQREGIVFLYE-CVMGMRV--SGR--FGAILADEMGLGKTLQCISLVWTLLRQ 353
Query: 780 VNLG----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAE 829
G L+ ALIVTP +++ NWK+EF KW SE ++VF V +D + E
Sbjct: 354 GVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSER--IKVFT---VDQDHKVE 402
>UNIPROTKB|Q29KH2 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0000711 "meiotic DNA repair synthesis" evidence=ISS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0043150 "DNA synthesis
involved in double-strand break repair via homologous
recombination" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH379061 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001356143.2
GeneID:4816519 KEGG:dpo:Dpse_GA17651 FlyBase:FBgn0077662
InParanoid:Q29KH2 Uniprot:Q29KH2
Length = 782
Score = 374 (136.7 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 101/333 (30%), Positives = 173/333 (51%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q +A ++T ++
Sbjct: 148 LSNILRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVALVWTLLKQ 201
Query: 780 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA 836
+ +IV+P +++ NW++EF KW + L +E S++ L ++
Sbjct: 202 SAECKPTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLA---MEGGSKENTVRALEQFSM 258
Query: 837 KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQAL 896
L G T +S+ R A +C + G +++CDE H +KN+ T QAL
Sbjct: 259 NASTRL-G-TPVLLISYETF---RIYAEILCK-YEVG--MVICDEGHRLKNSDNLTYQAL 310
Query: 897 KQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 956
+K +RR+ L+G+P+QN+L EY+ +V+FV LG++ +F+ F+N I GQ+ +ST +
Sbjct: 311 MGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDK 370
Query: 957 DVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHG 1016
+ +++ L + + + R ++ K LP K VI KL+P+Q +LY FL
Sbjct: 371 ERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQ 430
Query: 1017 FTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL 1048
EK + A L ++ +HP ++
Sbjct: 431 VRRSLADCKEKASLTALADITTLKKLCSHPNLI 463
Score = 292 (107.8 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
Identities = 73/193 (37%), Positives = 108/193 (55%)
Query: 1115 DYSGKMVLLLDILTMCSNMG-DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
+ SGK LL +L G DK ++ S TLDL E +L R K G +
Sbjct: 494 ELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFE----QLARKRKYG--------F 541
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTL--ISTRAGSLGINLHSANRVIIVDGSWNP 1231
RLDG +R K+V+RFN+P + C L +S++AG G+NL ANR+ + D WNP
Sbjct: 542 VRLDGTMSIKKRSKVVDRFNDPESD---CFLFMLSSKAGGCGLNLIGANRLFMFDPDWNP 598
Query: 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTIS 1290
D QA+ R WR GQ KP + YRL+A G++EEKI +RQ K+ L++ ++D + + +
Sbjct: 599 ANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFT 658
Query: 1291 KEEMLHLFEFGDD 1303
++++ LF F D
Sbjct: 659 RDDLKDLFSFDPD 671
>UNIPROTKB|B4GS98 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7234 "Drosophila persimilis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043150 EMBL:CH479189 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002021802.1 EnsemblMetazoa:FBtr0192316
GeneID:6596280 KEGG:dpe:Dper_GL26701 FlyBase:FBgn0164282
Uniprot:B4GS98
Length = 782
Score = 374 (136.7 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 101/333 (30%), Positives = 173/333 (51%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779
+S L+ HQ G+RFM+E + + K G+ GCI+A MGLGKT Q +A ++T ++
Sbjct: 148 LSNILRPHQREGVRFMYECV-----EGKRGNFN-GCIMADEMGLGKTLQCVALVWTLLKQ 201
Query: 780 ---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA 836
+ +IV+P +++ NW++EF KW + L +E S++ L ++
Sbjct: 202 SAECKPTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLA---MEGGSKENTVRALEQFSM 258
Query: 837 KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQAL 896
L G T +S+ R A +C + G +++CDE H +KN+ T QAL
Sbjct: 259 NASTRL-G-TPVLLISYETF---RIYAEILCK-YEVG--MVICDEGHRLKNSDNLTYQAL 310
Query: 897 KQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 956
+K +RR+ L+G+P+QN+L EY+ +V+FV LG++ +F+ F+N I GQ+ +ST +
Sbjct: 311 MGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDK 370
Query: 957 DVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHG 1016
+ +++ L + + + R ++ K LP K VI KL+P+Q +LY FL
Sbjct: 371 ERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQ 430
Query: 1017 FTNDRVS-NEKIRKSFFAGYQALAQIWNHPGIL 1048
EK + A L ++ +HP ++
Sbjct: 431 VRRSLADCKEKASLTALADITTLKKLCSHPNLI 463
Score = 291 (107.5 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 73/193 (37%), Positives = 107/193 (55%)
Query: 1115 DYSGKMVLLLDILTMCSNMG-DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
+ SGK LL +L G DK ++ S TLDL E L R K G +
Sbjct: 494 ELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFEL----LARKRKYG--------F 541
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTL--ISTRAGSLGINLHSANRVIIVDGSWNP 1231
RLDG +R K+V+RFN+P + C L +S++AG G+NL ANR+ + D WNP
Sbjct: 542 VRLDGTMSIKKRSKVVDRFNDPESD---CFLFMLSSKAGGCGLNLIGANRLFMFDPDWNP 598
Query: 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTIS 1290
D QA+ R WR GQ KP + YRL+A G++EEKI +RQ K+ L++ ++D + + +
Sbjct: 599 ANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFT 658
Query: 1291 KEEMLHLFEFGDD 1303
++++ LF F D
Sbjct: 659 RDDLKDLFSFDPD 671
>ZFIN|ZDB-GENE-060810-50 [details] [associations]
symbol:rad54b "RAD54 homolog B (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060810-50 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX511010
IPI:IPI00513586 Ensembl:ENSDART00000138496 Bgee:E9QHY4
Uniprot:E9QHY4
Length = 917
Score = 335 (123.0 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 104/343 (30%), Positives = 163/343 (47%)
Query: 714 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 773
V I ++ L+ HQ G+ F++E + +R +G G ILA MGLGKT Q + L
Sbjct: 298 VVIDPHLTNHLRPHQKEGVVFLYE-CLMGMRL--AGR--CGAILADEMGLGKTLQCVCVL 352
Query: 774 YTAMRSVNLG----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAE 829
+T +R G ++ AL+V P +++ NW EF KW E + V+ V +D R E
Sbjct: 353 WTLLRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRER--ISVYT---VDQDHRVE 407
Query: 830 LLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTR 889
V +I Y + V DR +E L G +L+CDE H +KN+
Sbjct: 408 DFVS-SPLCSVLVISYEMLL-----RSV-DR--LKE----LDFG--VLICDEGHRLKNSN 452
Query: 890 ADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQ 949
T AL + C RR+ LTG+P+QN+L E+Y +++FV G LG+S +R ++ PI +
Sbjct: 453 IKTAGALTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILGTSAAYRKIYEEPILRSR 512
Query: 950 HTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYK 1009
+ T E+ I +R+ L+ F R ++ + L + + + K + LQ RLY+
Sbjct: 513 QPSCTEEERCIGEERAAELFRLTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYR 572
Query: 1010 RFLDLHGFTNDRVSNEKIRKS-FFAGYQALAQIWNHPGILQLT 1051
L + S AL ++ NHP +L T
Sbjct: 573 VLLSTRPIRACLSGSHTYTHSPHLVCINALKKLCNHPALLYNT 615
Score = 330 (121.2 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 77/198 (38%), Positives = 116/198 (58%)
Query: 1117 SGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1174
SGK+++L D+L+ N D+ ++ S TLDL++ ++ G W
Sbjct: 646 SGKLLVLTDLLSAIQHVNRTDRVVLVSNHTQTLDLLQDVCDQI------------GYKWC 693
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG+T +RQK+V+ FN P + L+S++AG +G+NL A+ +++ D WNP D
Sbjct: 694 RLDGQTPVGQRQKIVDSFNSPHSSSF-LLLLSSKAGGVGLNLIGASHLVLYDIDWNPAND 752
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD--RQQVHRTISKE 1292
+QA+ R WR GQ K V YR + G++EEKIY+RQV+K+GL+ VVD ++ H + S E
Sbjct: 753 IQAMARVWRDGQKKTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTVVDLTKKAEHISFSAE 812
Query: 1293 EMLHLFEFGDDENPDPLT 1310
E+ LF F D N LT
Sbjct: 813 ELRDLFRF--DPNTTCLT 828
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 335 (123.0 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 80/219 (36%), Positives = 122/219 (55%)
Query: 1105 LLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQG 1164
L+ Y + SGKM +L ++L + + K+L+F Q+ LD++E +++ L
Sbjct: 600 LMKRKNYGDPAKSGKMQVLKNLLRLWQSENHKTLLFCQTRQMLDILEKFVANL------- 652
Query: 1165 KLWKKGK-DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVI 1223
L G ++ R+DG T S+RQ LV+ FN+ + V L++T+ G LG+NL A+RVI
Sbjct: 653 SLINGGDFNYLRMDGSTPISKRQMLVDAFNQDPDMHV--FLLTTKVGGLGVNLTGADRVI 710
Query: 1224 IVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQ 1283
I D WNP+ D+QA RAWR GQ + + YRLM G++EEKIY RQ+ K L +++
Sbjct: 711 IYDPDWNPSTDIQARERAWRLGQKRDITIYRLMTTGSIEEKIYHRQIFKTFLTNKILKDP 770
Query: 1284 QVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQ 1322
+ R ++ LF GD + TA E G+ S Q
Sbjct: 771 KQRRFFKANDLHDLFTLGDQDEEGTETAQLFEGGEQSQQ 809
Score = 329 (120.9 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 111/371 (29%), Positives = 172/371 (46%)
Query: 704 NVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGL 763
N+ K E ++P I L +Q ++++WE Q K+G I+ MGL
Sbjct: 251 NIADAKLNEKFKLPGDIYPSLFDYQKTCVQWLWELYTQ-----KTGG-----IIGDEMGL 300
Query: 764 GKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE----LKPLRVFML 819
GKT Q+I+FL + L + L+V P VL+ W EF +W P L + M
Sbjct: 301 GKTIQIISFL-AGLHYSGLLDKPVLVVVPATVLNQWVNEFHRWWPPLRCIILHSIGSGMN 359
Query: 820 EDVSRDRRAELL------AKWRAKGGV-FLIGYTAF--RNLSFGKHVKDRNMAREIC--H 868
VS + E L A + G+ I R + G + + I H
Sbjct: 360 GSVSESKLEEYLESTDPDATQSSLHGIKSQINAQEIVDRVMEKGHVLVTTYVGLRIYSKH 419
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
L +V DE H I+N +D + K++K RI L+G+P+QNNL+E + + DFV
Sbjct: 420 ILPREWGYVVLDEGHKIRNPDSDISLTCKKIKTVNRIILSGTPIQNNLIELWSLFDFVFP 479
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
G LG+ F+ F PI G + NS + VK + + +L + + ++ R + V +DL
Sbjct: 480 GRLGTLPVFQQEFSIPINIGGYANSNNLQVKTAYKCAVVLRDLISPYMLRRLKSDVAQDL 539
Query: 989 PPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
P K V+ VKL+ +Q+ LY+ FL + D S K +++ G L +I NHP ++
Sbjct: 540 PKKNEMVLFVKLTKIQQELYESFLQ----SEDLESILKGKRNVLMGVDILRKICNHPDLV 595
Query: 1049 Q---LTKDKGY 1056
L K K Y
Sbjct: 596 YRDTLMKRKNY 606
>ASPGD|ASPL0000027956 [details] [associations]
symbol:AN10677 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0006311 "meiotic gene conversion" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001305 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:LSEYFAL
EnsemblFungi:CADANIAT00003558 Uniprot:C8VG87
Length = 833
Score = 354 (129.7 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 109/359 (30%), Positives = 173/359 (48%)
Query: 706 VREKGEEAVRIPSSIS---AK-LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 761
+++K E ++P I AK L+ HQV +F++ I + GCI+A M
Sbjct: 221 LKKKVENRPKVPVVIDPRLAKVLRPHQV---QFLYRCTTGMIDR-----NAHGCIMADGM 272
Query: 762 GLGKTFQVIAFLYTAMR-SVNLGLRT---ALIVTPVNVLHNWKQEFMKWRPSELKPLRVF 817
GLGKT Q I+ ++T ++ S G T +I P +++ NW E KW + + F
Sbjct: 273 GLGKTLQCISLMWTLLKQSPEAGKTTIQKCIIACPSSLVGNWANELGKWLGKDT--ITPF 330
Query: 818 MLED-VSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-D 875
++ S+ L +W G ++ +S+ R L+D P
Sbjct: 331 AVDGKASKTELTSQLKQWAISSGRSIVRPVLI--VSY-------ETLRMYVDTLKDSPIG 381
Query: 876 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
+L+CDE H +KN + T AL + QRR+ L+G+P+QN+L EY+ +++F LGS +
Sbjct: 382 LLLCDEGHRLKNKESLTWTALNSLNVQRRVILSGTPIQNDLSEYFALLNFANPDLLGSQN 441
Query: 936 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 995
EFR RF+ PI G+ T ED K ++R L + F+ R +++ K LP K V
Sbjct: 442 EFRKRFEIPILKGRDAAGTEEDRKKGDERLAELSSIVNKFIIRRTNDILSKYLPVKYEHV 501
Query: 996 ITVKLSPLQRRLYKRFLDLHGFTND-RVSNEKIRKSFFAGYQALAQIWNHPGILQLTKD 1053
+ LS Q LYK F+D + R + K+ G L ++ NHP +L L+ D
Sbjct: 502 VFCNLSQFQLDLYKHFIDSPEIKSLLRGKGSQPLKAI--GI--LKKLCNHPDLLNLSTD 556
Score = 311 (114.5 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 77/187 (41%), Positives = 108/187 (57%)
Query: 1116 YSGKMVLLLDILTMC-SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1174
YSGKM++L +L + DK ++ S TLDL E KL R G L
Sbjct: 584 YSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFE----KLCRSRAYGCL-------- 631
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG +RQKLV++FN+P + L+S++AG G+NL ANR+++ D WNP D
Sbjct: 632 RLDGTMNVKKRQKLVDKFNDPDGEEF-VFLLSSKAGGCGLNLIGANRLVLFDPDWNPAAD 690
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-QQVHRTISKEE 1293
QA+ R WR GQ K F YR +A G++EEKI++RQ K+ L++ VVD + V R S +
Sbjct: 691 QQALARVWRDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERHFSLDS 750
Query: 1294 MLHLFEF 1300
+ LF+F
Sbjct: 751 LRELFQF 757
Score = 41 (19.5 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 285 GNSDDPFVADAIANEKELALSEEQRKKFR--KVKEEDDA 321
G+ DD V NE+ LAL+ +F K K++D A
Sbjct: 92 GSIDDNSVKP-YTNEERLALATRDVNRFPVFKAKDKDVA 129
Score = 41 (19.5 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 553 KTLFCTTCVKRNISEACLSDEVQASCWQCC--CCSPSLLKRLTSELGRAMG 601
KTL C + + + + S E + Q C C SL+ +ELG+ +G
Sbjct: 276 KTLQCISLMWTLLKQ---SPEAGKTTIQKCIIACPSSLVGNWANELGKWLG 323
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 337 (123.7 bits), Expect = 6.3e-55, Sum P(3) = 6.3e-55
Identities = 78/202 (38%), Positives = 116/202 (57%)
Query: 1105 LLH--EHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK 1162
LLH ++ Y + + SGK+ ++ +LT+ G ++L+FSQ+ LD++E L LP
Sbjct: 610 LLHKEDYNYGDPEKSGKLKVIRALLTLWKKQGHRTLLFSQTRQMLDILEIGLKDLP---- 665
Query: 1163 QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1222
+ R+DG T + RQ LV+ FN+ N+ L++TR G LG+NL A+RV
Sbjct: 666 -------DVHYCRMDGSTSIALRQDLVDNFNK--NEYFDVFLLTTRVGGLGVNLTGADRV 716
Query: 1223 IIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282
I+ D WNP+ D QA RAWR GQ K V YRLM GT+EEKIY RQ+ K+ L +++
Sbjct: 717 ILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKD 776
Query: 1283 QQVHRTISKEEMLHLFEFGDDE 1304
+ R ++ LF GD++
Sbjct: 777 PKQRRFFKMTDLHDLFTLGDNK 798
Score = 247 (92.0 bits), Expect = 6.3e-55, Sum P(3) = 6.3e-55
Identities = 60/172 (34%), Positives = 102/172 (59%)
Query: 878 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 937
V DE H I+N ++ + + KQ++ RI L+G+P+QNNL E + + DFV G LG+ F
Sbjct: 439 VLDEGHKIRNPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVF 498
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDMNVVKKDLPPKTVFVI 996
+N+F PI G + N+++ V+ + + +L + + ++ +RM ++V DLP K+ V+
Sbjct: 499 QNQFALPINIGGYANASNVQVQTAYKCACMLRDLISPYLLRRMKLDVAA-DLPKKSEQVL 557
Query: 997 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
KL+PLQR+ Y+ FL G ++ N K R+ + G L +I NHP ++
Sbjct: 558 FCKLTPLQRKAYQDFLQ--GSDMQKILNGK-RQMLY-GIDILRKICNHPDLV 605
Score = 127 (49.8 bits), Expect = 6.3e-55, Sum P(3) = 6.3e-55
Identities = 38/118 (32%), Positives = 53/118 (44%)
Query: 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 770
E IP I L +QV ++++WE Q G I+ MGLGKT Q++
Sbjct: 264 EGGFTIPGDIRPHLFRYQVTCVQWLWELYCQEA----------GGIIGDEMGLGKTIQIV 313
Query: 771 AFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 828
+FL + S + ALIV P ++ W EF W PLRV +L +RA
Sbjct: 314 SFLSSLHHSGKFQ-KPALIVCPATLMKQWVNEFHTW----WAPLRVVVLHATGSGQRA 366
Score = 39 (18.8 bits), Expect = 9.7e-46, Sum P(3) = 9.7e-46
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 112 KEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQV 151
K Q+E+ E E E + +L GA S +R +N V
Sbjct: 370 KRQYESDASESEAEESKTSIKLRGAS---SSFHRYAKNLV 406
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 280 (103.6 bits), Expect = 8.7e-55, Sum P(4) = 8.7e-55
Identities = 70/198 (35%), Positives = 109/198 (55%)
Query: 1110 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1169
T+ E+D SGK+ +L+ +L + V L+ Y L + K +
Sbjct: 642 TFSEID-SGKLQVLVKLLAAIRELSSSERVV--------LVSNYTQTLNVLLETCKCY-- 690
Query: 1170 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1229
G + RLDG T S+RQ++V+ FN + L+S++AG +G+NL A+ +I+ D W
Sbjct: 691 GYSYTRLDGNTPVSQRQQIVDSFNSKFSPAF-IFLLSSKAGGVGLNLVGASHLILYDIDW 749
Query: 1230 NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV--HR 1287
NP D+QA+ R WR GQ V YRL+ GT+EEKIY+RQ++K+ L+ VVD + H
Sbjct: 750 NPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHI 809
Query: 1288 TISKEEMLHLFEFGDDEN 1305
S EE+ +LF ++ +
Sbjct: 810 HFSVEELRNLFTLHENSS 827
Score = 273 (101.2 bits), Expect = 8.7e-55, Sum P(4) = 8.7e-55
Identities = 64/185 (34%), Positives = 103/185 (55%)
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
++L+CDE H +KN+ TT AL + C+RRI LTG+P+QN+L E+Y +++FV G LGS
Sbjct: 433 NLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQEFYALIEFVNPGVLGSL 492
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTV 993
+R ++ PI + ++T E+ + +R+ L +L G F+ R V+ K LPPK
Sbjct: 493 STYRKIYEEPIVRSREPSATKEEKDLGEKRAAEL-TRLTGLFILRRTQEVINKFLPPKKE 551
Query: 994 FVITVKLSPLQRRLYKRFLD---LHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL-Q 1049
+I + + LQ LY++ L + R+ N G AL ++ NHP +L +
Sbjct: 552 NIIFCQPTALQLELYRKLLSSRVISSCLQGRLENSP--HLICIG--ALKKLCNHPCLLFK 607
Query: 1050 LTKDK 1054
K+K
Sbjct: 608 ALKEK 612
Score = 167 (63.8 bits), Expect = 8.7e-55, Sum P(4) = 8.7e-55
Identities = 47/114 (41%), Positives = 66/114 (57%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779
I+ L+ HQ GI F++E + +R SG G ILA MGLGKT Q I+ ++T +R
Sbjct: 299 IANNLRPHQREGIVFLYE-CVMGMRV--SGR--FGAILADEMGLGKTLQCISLVWTLLRQ 353
Query: 780 VNLG----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAE 829
G L+ ALIVTP +++ NWK+EF KW SE ++VF V +D + E
Sbjct: 354 GVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSER--IKVFT---VDQDHKVE 402
Score = 38 (18.4 bits), Expect = 8.7e-55, Sum P(4) = 8.7e-55
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 218 ENGGKEVSDINWNSVNK 234
E+ GK S WNS +K
Sbjct: 74 ESSGKVKSTKAWNSTSK 90
>SGD|S000003131 [details] [associations]
symbol:RAD54 "DNA-dependent ATPase that stimulates strand
exchange" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032392 "DNA geometric change" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032079 "positive regulation
of endodeoxyribonuclease activity" evidence=IDA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IMP] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=IDA] [GO:0030491 "heteroduplex formation"
evidence=IDA] [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 SGD:S000003131 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0006338 GO:GO:0004386 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0000722
GO:GO:0015616 GO:GO:0032392 GO:GO:0032079 HOGENOM:HOG000204521
GO:GO:0030491 KO:K10875 OMA:LSEYFAL OrthoDB:EOG4T1MVP EMBL:M63232
EMBL:Z72685 PIR:JH0440 RefSeq:NP_011352.1 ProteinModelPortal:P32863
SMR:P32863 DIP:DIP-509N IntAct:P32863 MINT:MINT-605745
STRING:P32863 EnsemblFungi:YGL163C GeneID:852713 KEGG:sce:YGL163C
CYGD:YGL163c NextBio:972079 Genevestigator:P32863
GermOnline:YGL163C Uniprot:P32863
Length = 898
Score = 347 (127.2 bits), Expect = 7.8e-54, Sum P(3) = 7.8e-54
Identities = 93/291 (31%), Positives = 149/291 (51%)
Query: 737 ENIIQSIRKVKSGDKGL-GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRT---ALIVTP 792
E + +K + ++G GCI+A MGLGKT Q IA ++T +R G R +IV P
Sbjct: 312 EKALTESQKTEQNNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCP 371
Query: 793 VNVLHNWKQEFMKWR-PSELKPLRVFMLEDV---SRDRRAELLAKW-RAKGG-----VFL 842
++++NW E +KW P+ L PL V + ++ + W +A+G V +
Sbjct: 372 SSLVNNWANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLI 431
Query: 843 IGY-TAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKC 901
I Y T RN+ +K+ N+ +++ DE H +KN + T AL + C
Sbjct: 432 ISYETLRRNVD---QLKNCNVG------------LMLADEGHRLKNGDSLTFTALDSISC 476
Query: 902 QRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIM 961
RR+ L+G+P+QN+L EY+ ++ F G LGS EFR F+NPI G+ ++T +++
Sbjct: 477 PRRVILSGTPIQNDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKG 536
Query: 962 NQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFL 1012
+ L + F+ R +++ K LP K VI V L PLQ LY + +
Sbjct: 537 EAQLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLI 587
Score = 298 (110.0 bits), Expect = 7.8e-54, Sum P(3) = 7.8e-54
Identities = 76/186 (40%), Positives = 106/186 (56%)
Query: 1116 YSGKMVLLLDIL-TMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1174
YS K +L L + + DK ++ S TLDLIE K+ R K
Sbjct: 653 YSAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIE----KMCR--------YKHYSAV 700
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG ++RQKLV+RFN+P + L+S++AG GINL ANR+I++D WNP D
Sbjct: 701 RLDGTMSINKRQKLVDRFNDPEGQEF-IFLLSSKAGGCGINLIGANRLILMDPDWNPAAD 759
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD-RQQVHRTISKEE 1293
QA+ R WR GQ K F YR ++ GT+EEKI++RQ K L++ VVD ++ V R S +
Sbjct: 760 QQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDN 819
Query: 1294 MLHLFE 1299
+ LF+
Sbjct: 820 LRQLFQ 825
Score = 53 (23.7 bits), Expect = 7.8e-54, Sum P(3) = 7.8e-54
Identities = 24/109 (22%), Positives = 49/109 (44%)
Query: 639 LDDAELGEETKRKIAI--EKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 696
+D+ E EE+K+ I EK+ + K+ Q + ++ + + + E+LGD
Sbjct: 188 MDNKE--EESKKMIKSTQEKDNINKEKNSQEERPTQRIGRHPALMTNGVRNKPLRELLGD 245
Query: 697 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRK 745
+ ++ V I ++ L+ HQV G+RF++ + + K
Sbjct: 246 SENS--AENKKKFASVPVVIDPKLAKILRPHQVEGVRFLYRCVTGLVMK 292
Score = 44 (20.5 bits), Expect = 6.8e-53, Sum P(3) = 6.8e-53
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 289 DPFV-ADAIANEKELALSEEQRKKFRK-VKEEDDANMD 324
DP V + I ++ + EE+ KK K +E+D+ N +
Sbjct: 174 DPSVDGEMIVHDTSMDNKEEESKKMIKSTQEKDNINKE 211
Score = 40 (19.1 bits), Expect = 5.1e-21, Sum P(2) = 5.1e-21
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 286 NSDDPFVA--DAIANEKELALSEEQRKKFRKV 315
N ++P + DA A +KE+ E Q +K +
Sbjct: 515 NFENPILRGRDADATDKEITKGEAQLQKLSTI 546
>UNIPROTKB|Q9Y620 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006312 "mitotic recombination"
evidence=TAS] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0003724 "RNA helicase activity" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0006312 GO:GO:0007131
GO:GO:0003724 EMBL:AC023632 UniGene:Hs.30561 UniGene:Hs.657457
GeneID:25788 KEGG:hsa:25788 CTD:25788 KO:K10877 NextBio:46945
GO:GO:0015616 HOGENOM:HOG000204521 HOVERGEN:HBG058654
OrthoDB:EOG4SBDX5 EMBL:AF112481 EMBL:AL523600 EMBL:AP003534
EMBL:BC001965 IPI:IPI00018281 IPI:IPI00797041 RefSeq:NP_001192192.1
RefSeq:NP_036547.1 ProteinModelPortal:Q9Y620 SMR:Q9Y620
IntAct:Q9Y620 MINT:MINT-1441930 STRING:Q9Y620 PhosphoSite:Q9Y620
DMDM:51316548 PaxDb:Q9Y620 PRIDE:Q9Y620 Ensembl:ENST00000297592
Ensembl:ENST00000336148 UCSC:uc003ygk.3 GeneCards:GC08M095384
HGNC:HGNC:17228 HPA:HPA007087 MIM:604289 neXtProt:NX_Q9Y620
PharmGKB:PA134927202 InParanoid:Q9Y620 OMA:VCKRHGY PhylomeDB:Q9Y620
ChiTaRS:RAD54B GenomeRNAi:25788 ArrayExpress:Q9Y620 Bgee:Q9Y620
CleanEx:HS_RAD54B Genevestigator:Q9Y620 GermOnline:ENSG00000197275
Uniprot:Q9Y620
Length = 910
Score = 282 (104.3 bits), Expect = 2.9e-53, Sum P(4) = 2.9e-53
Identities = 77/213 (36%), Positives = 120/213 (56%)
Query: 1102 WNDLLHEHTYKELDYSGKMVLLLDILTMCSNMG--DKSLVFSQSIPTLDLIEFYLSKLPR 1159
+N LL T KE SGK+ +L +L + + +K ++ S TL++++ + K
Sbjct: 631 YNPLLF--TEKE---SGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQ-EVCK--- 681
Query: 1160 PGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSA 1219
+ G + RLDG+T S+RQ++V+ FN + L+S++AG +G+NL
Sbjct: 682 --------RHGYAYTRLDGQTPISQRQQIVDGFNSQ-HSSFFIFLLSSKAGGVGLNLIGG 732
Query: 1220 NRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARV 1279
+ +I+ D WNP D+QA+ R WR GQ PV YRL+ GT+EEKIY+RQ++K+GL V
Sbjct: 733 SHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAV 792
Query: 1280 VD--RQQVHRTISKEEMLHLFEFGDDENPDPLT 1310
VD + H S EE+ +LF E+ D +T
Sbjct: 793 VDLTKTSEHIQFSVEELKNLFTL--HESSDCVT 823
Score = 259 (96.2 bits), Expect = 2.9e-53, Sum P(4) = 2.9e-53
Identities = 53/140 (37%), Positives = 82/140 (58%)
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
D+L+CDE H +KN+ TT AL + C++RI LTG+P+QN+L E++ ++DFV G LGS
Sbjct: 426 DLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSL 485
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTV 993
+R ++ PI + S SE+ K + +R L G F+ R ++ K LPPK
Sbjct: 486 SSYRKIYEEPIILSREP-SASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKIE 544
Query: 994 FVITVKLSPLQRRLYKRFLD 1013
V+ + LQ LY++ L+
Sbjct: 545 NVVFCRPGALQIELYRKLLN 564
Score = 156 (60.0 bits), Expect = 2.9e-53, Sum P(4) = 2.9e-53
Identities = 49/140 (35%), Positives = 74/140 (52%)
Query: 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG 783
L+ HQ GI F++E + +R +G G ILA MGLGKT Q I+ ++T G
Sbjct: 296 LRPHQKEGIIFLYE-CVMGMRM--NGR--CGAILADEMGLGKTLQCISLIWTLQCQGPYG 350
Query: 784 ----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGG 839
++ LIVTP ++++NWK+EF KW SE +++F V +D + E K
Sbjct: 351 GKPVIKKTLIVTPGSLVNNWKKEFQKWLGSER--IKIFT---VDQDHKVEEFIK-SIFYS 404
Query: 840 VFLIGYTAF-RNLSFGKHVK 858
V +I Y R+L K++K
Sbjct: 405 VLIISYEMLLRSLDQIKNIK 424
Score = 46 (21.3 bits), Expect = 2.9e-53, Sum P(4) = 2.9e-53
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFS 670
LD +++A+ KE++E+ SL FS
Sbjct: 96 LDPPHTVHSAPKEVAVSKEQEEKSDSLVKYFS 127
Score = 37 (18.1 bits), Expect = 2.5e-52, Sum P(4) = 2.5e-52
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 300 KELALSEEQRKK 311
KE+A+S+EQ +K
Sbjct: 107 KEVAVSKEQEEK 118
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 287 (106.1 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 69/186 (37%), Positives = 109/186 (58%)
Query: 1117 SGKMVLLLDILTMCSNM--GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1174
SGK+ +L +L + + +K ++ S TLD+++ + K + G +
Sbjct: 641 SGKLQVLSKLLAVIRELRPAEKVVLVSNYTRTLDILQ-EVCK-----------RHGYAYT 688
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG+T S+RQ++V+ FN + L+S++AG +G+NL + +I+ D WNP D
Sbjct: 689 RLDGQTPISQRQQIVDGFNSKYSSDF-IFLLSSKAGGVGLNLIGGSHLILYDIDWNPATD 747
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV--HRTISKE 1292
+QA+ R WR GQ PV YRL+ GT+EEKIY+RQ++K+GL+ VVD + H S E
Sbjct: 748 IQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLSKTSDHIQFSVE 807
Query: 1293 EMLHLF 1298
E+ +LF
Sbjct: 808 ELKNLF 813
Score = 256 (95.2 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 59/175 (33%), Positives = 96/175 (54%)
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
D+L+CDE H +KN+ TT AL + C++RI LTG+P+QN+L E++ ++DFV G LGS
Sbjct: 426 DLLICDEGHRLKNSTIKTTTALISLSCEKRIILTGTPVQNDLQEFFTLIDFVNPGILGSL 485
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTV 993
+R ++ PI + +++ E+ ++ QR+ L L G F+ R V+ + LPPK
Sbjct: 486 SAYRKIYEEPIIISRQPSASEEERELGEQRAAEL-TCLTGLFILRRTQEVINQYLPPKIE 544
Query: 994 FVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
V+ + LQ LY++ L+ + S AL ++ NHP +L
Sbjct: 545 NVVFCRPGALQIALYRKLLNSQA-VRFCLQGLLENTSHLICIGALKKLCNHPCLL 598
Score = 152 (58.6 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 49/140 (35%), Positives = 73/140 (52%)
Query: 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG 783
L+ HQ GI F++E + +R +G G ILA MGLGKT Q I+ ++T G
Sbjct: 296 LRPHQKEGITFLYE-CVMGMRV--NGR--CGAILADEMGLGKTLQCISLIWTLQCQGPYG 350
Query: 784 ----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGG 839
++ LIVTP ++++NWK+EF KW E +++F V +D + E K
Sbjct: 351 GKPIVKKTLIVTPGSLVNNWKKEFQKWLGIER--IKIFT---VDQDHKVEEFTK-SPFYS 404
Query: 840 VFLIGYTAF-RNLSFGKHVK 858
V +I Y R+L K+VK
Sbjct: 405 VLIISYEMLLRSLDQIKNVK 424
Score = 45 (20.9 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 1057 PSRXXXXXXXXXXNMDYNVVIGEKPRNMNDFLQGKND 1093
P+R ++ ++ + E N N+FLQ +ND
Sbjct: 23 PARSHPSPNEEVAKLNSDIKLFEVAANKNNFLQPQND 59
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 291 (107.5 bits), Expect = 4.8e-53, Sum P(3) = 4.8e-53
Identities = 70/186 (37%), Positives = 109/186 (58%)
Query: 1117 SGKMVLLLDILTMCSNMG--DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1174
SGK+ +LL +L + + +K ++ S TLD+++ + K + G +
Sbjct: 642 SGKLQVLLKLLAVIHELRPTEKVVLVSNYTQTLDILQ-EVCK-----------RHGYTYT 689
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG+T S+RQ++V+ FN + L+S++AG +G+NL + +I+ D WNP D
Sbjct: 690 RLDGQTPVSQRQQIVDSFNSKYSSDF-IFLLSSKAGGVGLNLIGGSHLILYDIDWNPATD 748
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD--RQQVHRTISKE 1292
+QA+ R WR GQ PV YRL+ GT+EEKIY+RQ++K+ L+ VVD R H S E
Sbjct: 749 IQAMSRVWRDGQKNPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTRTSEHIQFSVE 808
Query: 1293 EMLHLF 1298
E+ +LF
Sbjct: 809 ELKNLF 814
Score = 251 (93.4 bits), Expect = 4.8e-53, Sum P(3) = 4.8e-53
Identities = 50/139 (35%), Positives = 84/139 (60%)
Query: 876 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
+L+CDE H +KN+ TT AL + C++R+ LTG+P+QN+L E++ ++DFV G LGS
Sbjct: 428 LLICDEGHRLKNSAIKTTAALISLSCEKRVILTGTPVQNDLQEFFALIDFVNPGILGSLS 487
Query: 936 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTVF 994
+R ++ PI + +++ E+ K+ +R+ + L G F+ R V+ K LPPK
Sbjct: 488 FYRKVYEEPIIISRQPSASEEEKKLGEKRA-VELTCLTGLFILRRTQEVINKYLPPKIEN 546
Query: 995 VITVKLSPLQRRLYKRFLD 1013
V+ + LQ LY++ L+
Sbjct: 547 VVFCRPGALQIELYRKLLN 565
Score = 152 (58.6 bits), Expect = 4.8e-53, Sum P(3) = 4.8e-53
Identities = 48/140 (34%), Positives = 74/140 (52%)
Query: 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG 783
L+ HQ GI F++E + +R +G G ILA MGLGKT Q I+ ++T G
Sbjct: 297 LRPHQKEGIMFLYE-CVMGMRV--NGR--CGAILADEMGLGKTLQCISLIWTLQCQGPYG 351
Query: 784 ----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGG 839
++ LIVTP ++++NW++EF KW SE +++F V +D + E +
Sbjct: 352 GKPVVKKTLIVTPGSLVNNWRKEFQKWLGSER--IKIF---PVDQDHKVEEFTR-SPFYS 405
Query: 840 VFLIGYTAF-RNLSFGKHVK 858
V +I Y R+L K+VK
Sbjct: 406 VLIISYEMLLRSLDQIKNVK 425
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 328 (120.5 bits), Expect = 9.5e-53, Sum P(3) = 9.5e-53
Identities = 83/218 (38%), Positives = 114/218 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKM+++ +L + G + L+FSQS LD++E +L R K L ++
Sbjct: 833 SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFL----RAQKYSYL--------KM 880
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T + RQ L+ R+NE + + L++TR G +G+NL ANRVII D WNP+ D Q
Sbjct: 881 DGTTAIASRQPLITRYNEDTS--IFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQ 938
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLH 1296
A RAWR GQ K V YRL+ GT+EEKIY RQ+ K+ L RV+ + R ++
Sbjct: 939 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYE 998
Query: 1297 LFEFGDDENPDPLTAVSKENGQGSS-QNTNCALKHKLP 1333
LF + G GS Q LK KLP
Sbjct: 999 LFTLTSPGASQSTETSAIFAGTGSEVQTPKLHLKRKLP 1036
Score = 325 (119.5 bits), Expect = 9.5e-53, Sum P(3) = 9.5e-53
Identities = 100/307 (32%), Positives = 158/307 (51%)
Query: 754 GCILAHTMGLGKTFQVIAFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFM 804
G IL MGLGKT Q+IAFL Y+ +R+ N GL +IV P V+H W +EF
Sbjct: 523 GGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFKGLGPTIIVCPTTVMHQWVKEFH 582
Query: 805 KWRPSELKPLRVFMLEDV-SRDRRAELLAKWRAK-GGVFLIGYTAFRNLSFGKHVKDRNM 862
W P P RV +L + S ++ E L + A G+ + Y+ R + +D ++
Sbjct: 583 TWWP----PFRVAILHETGSYTQKKEKLIRDIAHCHGILITSYSYIRLM------QD-DI 631
Query: 863 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCM 922
+R H ++ DE H I+N A T A KQ + RI L+GSP+QNNL E + +
Sbjct: 632 SRHDWH-------YVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSL 684
Query: 923 VDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDM 981
DF+ G LG+ F +F PI G ++N++ VK + + +L + + ++ +RM
Sbjct: 685 FDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS 744
Query: 982 NV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ 1040
+V + LP K V+ +L+ Q ++Y+ F+D R+ N ++ F+G AL +
Sbjct: 745 DVKMSLSLPDKNEQVLFCRLTEEQHKVYQNFIDSKEVY--RILNGDMQ--IFSGLVALRK 800
Query: 1041 IWNHPGI 1047
I NHP +
Sbjct: 801 ICNHPDL 807
Score = 148 (57.2 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 49/146 (33%), Positives = 71/146 (48%)
Query: 715 RIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL- 773
++P + KL +Q G+R++WE Q G IL MGLGKT Q+IAFL
Sbjct: 494 KMPGFLFRKLFKYQQTGVRWLWELHCQQA----------GGILGDEMGLGKTIQIIAFLA 543
Query: 774 ---YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDV-SR 824
Y+ +R+ N GL +IV P V+H W +EF W P P RV +L + S
Sbjct: 544 GLSYSKIRTRGSNYRFKGLGPTIIVCPTTVMHQWVKEFHTWWP----PFRVAILHETGSY 599
Query: 825 DRRAELLAKWRAK-GGVFLIGYTAFR 849
++ E L + A G+ + Y+ R
Sbjct: 600 TQKKEKLIRDIAHCHGILITSYSYIR 625
Score = 46 (21.3 bits), Expect = 9.5e-53, Sum P(3) = 9.5e-53
Identities = 26/114 (22%), Positives = 44/114 (38%)
Query: 98 DDLEAAV--EDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGC 155
D LE V + + +++ A L ++E E +L+ L L + ++IE P
Sbjct: 108 DVLEQGVLRQVDSAIHEASRAAQLADVEKEYRSVLDDLTSCTTSLRQINKIIEQLSPQAA 167
Query: 156 CTEAWKRRAHWVGSQVTSEMRE--SIAGAEDFLQT-----ERPVRRRHGKLLEE 202
R+ V Q ++ ++ I + LQ E V H L EE
Sbjct: 168 TNRNVNRKLDSVKRQKYNKEQQLKKITAKQKRLQAILGGVEVQVELDHASLEEE 221
Score = 45 (20.9 bits), Expect = 2.5e-23, Sum P(3) = 2.5e-23
Identities = 25/99 (25%), Positives = 41/99 (41%)
Query: 1255 LMAHGTMEEKIYKRQVTKE-GLAARVVDRQQVHRT-----ISKEEMLHLFEFGDDENPDP 1308
L G EEK + +E + + VD RT +S EE +H + G + +
Sbjct: 1096 LTGSGGPEEKTKAVPILEELSVTSGRVDCSSSPRTSKMDGLSSEESIHEKQ-GLSDRRES 1154
Query: 1309 LTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESL 1347
A + E Q + ++ N KHK H ++ +E L
Sbjct: 1155 CQAQT-EPLQENKESENNFSKHKSKTKHSVLEEETLEQL 1192
Score = 42 (19.8 bits), Expect = 2.5e-52, Sum P(3) = 2.5e-52
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 299 EKELALSEEQRKKFRKVKEEDDANMD 324
E+ +S++Q +K+EDD NM+
Sbjct: 23 EQSQCVSDKQEMT---IKQEDDGNME 45
Score = 37 (18.1 bits), Expect = 0.00049, Sum P(4) = 0.00049
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1009 KRFLDLHGFTNDRVSNEK 1026
++F D + TND S+E+
Sbjct: 1049 RKFPDSNASTNDTTSSEE 1066
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 322 (118.4 bits), Expect = 9.6e-53, Sum P(3) = 9.6e-53
Identities = 81/259 (31%), Positives = 129/259 (49%)
Query: 1103 NDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK 1162
+ L E + SGKM+++ +L + G + L+F+QS L+++E ++ +
Sbjct: 802 DQLTEEEHFGYWKRSGKMIVVESLLRLWHKQGHRVLLFTQSRQMLEILEVFVKE------ 855
Query: 1163 QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1222
G + ++DG T + RQ L+ +FN+ NK + +++TR G LG+NL ANRV
Sbjct: 856 ------NGFSYLKMDGTTTIASRQPLIAQFNQ--NKDIFVFILTTRVGGLGVNLTGANRV 907
Query: 1223 IIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282
+I D WNP+ D QA RAWR GQ + V YRL+ GT+EEKIY RQ+ K+ L RV+
Sbjct: 908 VIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKD 967
Query: 1283 QQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCS-D 1341
+ R ++ LF + + G GS + +HK +G +
Sbjct: 968 PKQRRFFKSNDIYELFTLSSPDGSQGTETSAIFAGTGS--DVQVPKRHKTSSPSQGTTRP 1025
Query: 1342 KLMESLLGKHHPRCAVNGI 1360
L S + +VNG+
Sbjct: 1026 SLSHSTDSGNRNTTSVNGL 1044
Score = 320 (117.7 bits), Expect = 9.6e-53, Sum P(3) = 9.6e-53
Identities = 98/307 (31%), Positives = 151/307 (49%)
Query: 754 GCILAHTMGLGKTFQVIAFL----YTAM--RSVNL---GLRTALIVTPVNVLHNWKQEFM 804
G IL MGLGKT Q+IAFL Y+ + R N GL +IV P V+H W +EF
Sbjct: 504 GGILGDEMGLGKTIQIIAFLAGLSYSKLKTRGSNYRYAGLGPTVIVCPATVMHQWVKEFH 563
Query: 805 KWRPSELKPLRVFMLEDVSR--DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNM 862
W P P RV +L D ++ +L+ + A G+ + Y+ R + +
Sbjct: 564 TWWP----PFRVAVLHDTGSFTSKKEKLIPEIVASHGILITSYSYIR-------IMQDYI 612
Query: 863 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCM 922
R H ++ DE H I+N A T A KQ + R L+GSP+QNNL E + +
Sbjct: 613 QRYDWH-------YVILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPMQNNLKELWSL 665
Query: 923 VDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDM 981
DFV G LG+ F +F PI G + N++ V+ + + +L + + ++ +RM
Sbjct: 666 FDFVFPGKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTINPYLLRRMKA 725
Query: 982 NV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ 1040
+V LP K V+ +L+ QR++Y+ FLD ++ N ++ F+G AL +
Sbjct: 726 DVKANLSLPDKNEQVLFCRLTEDQRQVYQTFLDSKEVY--QILNGDMQ--VFSGLIALRK 781
Query: 1041 IWNHPGI 1047
I NHP +
Sbjct: 782 ICNHPDL 788
Score = 169 (64.5 bits), Expect = 5.3e-37, Sum P(3) = 5.3e-37
Identities = 51/150 (34%), Positives = 72/150 (48%)
Query: 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 770
+E +IP + KL +Q G+R+MWE Q G IL MGLGKT Q+I
Sbjct: 471 DEGFKIPGFLWKKLFKYQQTGVRWMWELHCQQA----------GGILGDEMGLGKTIQII 520
Query: 771 AFL----YTAM--RSVNL---GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 821
AFL Y+ + R N GL +IV P V+H W +EF W P P RV +L D
Sbjct: 521 AFLAGLSYSKLKTRGSNYRYAGLGPTVIVCPATVMHQWVKEFHTWWP----PFRVAVLHD 576
Query: 822 VSR--DRRAELLAKWRAKGGVFLIGYTAFR 849
++ +L+ + A G+ + Y+ R
Sbjct: 577 TGSFTSKKEKLIPEIVASHGILITSYSYIR 606
Score = 56 (24.8 bits), Expect = 9.6e-53, Sum P(3) = 9.6e-53
Identities = 22/80 (27%), Positives = 34/80 (42%)
Query: 79 SLVKLKNEVREELA-QALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAG 137
S +K N++ E+L A D+ +E + KE E L ++ + L LDG
Sbjct: 133 SALKHINKILEQLTPHAASSKDISRKIES-VKRQKENKEKQLKKIRAKQKRLQALLDGED 191
Query: 138 IELPSLYRLIENQVPNGCCT 157
I+ LIE+ G T
Sbjct: 192 IQKLEAELLIEDDEEPGPST 211
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 334 (122.6 bits), Expect = 2.9e-52, Sum P(4) = 2.9e-52
Identities = 84/231 (36%), Positives = 120/231 (51%)
Query: 1103 NDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK 1162
+D L E + SGKM+++ +L + G + L+FSQS LD++E +L R K
Sbjct: 824 DDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFL----RAQK 879
Query: 1163 QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1222
L ++DG T + RQ L+ R+NE + + L++TR G LG+NL ANRV
Sbjct: 880 YTYL--------KMDGTTTIASRQPLITRYNEDTS--IFVFLLTTRVGGLGVNLTGANRV 929
Query: 1223 IIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282
+I D WNP+ D QA RAWR GQ K V YRL+ GT+EEKIY RQ+ K+ L RV+
Sbjct: 930 VIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKD 989
Query: 1283 QQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSS-QNTNCALKHKL 1332
+ R ++ LF + + G GS Q C LK ++
Sbjct: 990 PKQRRFFKSNDLYELFTLTSPDASQSTETSAIFAGTGSDVQTPKCHLKRRI 1040
Score = 321 (118.1 bits), Expect = 2.9e-52, Sum P(4) = 2.9e-52
Identities = 100/307 (32%), Positives = 158/307 (51%)
Query: 754 GCILAHTMGLGKTFQVIAFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFM 804
G IL MGLGKT Q+IAFL Y+ +R+ N GL +IV P V+H W +EF
Sbjct: 527 GGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFH 586
Query: 805 KWRPSELKPLRVFMLEDV-SRDRRAELLAKWRAK-GGVFLIGYTAFRNLSFGKHVKDRNM 862
W P P RV +L + S + E L + A G+ + Y+ R + +D ++
Sbjct: 587 TWWP----PFRVAILHETGSYTHKKEKLIRDVAHCHGILITSYSYIRLM------QD-DI 635
Query: 863 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCM 922
+R H ++ DE H I+N A T A KQ + RI L+GSP+QNNL E + +
Sbjct: 636 SRYDWH-------YVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSL 688
Query: 923 VDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDM 981
DF+ G LG+ F +F PI G ++N++ VK + + +L + + ++ +RM
Sbjct: 689 FDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS 748
Query: 982 NV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ 1040
+V + LP K V+ +L+ Q ++Y+ F+D R+ N +++ F+G AL +
Sbjct: 749 DVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVY--RILNGEMQ--IFSGLIALRK 804
Query: 1041 IWNHPGI 1047
I NHP +
Sbjct: 805 ICNHPDL 811
Score = 154 (59.3 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 50/150 (33%), Positives = 72/150 (48%)
Query: 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 770
+E ++P + KL +Q G+R++WE Q G IL MGLGKT Q+I
Sbjct: 494 DEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQA----------GGILGDEMGLGKTIQII 543
Query: 771 AFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 821
AFL Y+ +R+ N GL +IV P V+H W +EF W P P RV +L +
Sbjct: 544 AFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWP----PFRVAILHE 599
Query: 822 V-SRDRRAELLAKWRAK-GGVFLIGYTAFR 849
S + E L + A G+ + Y+ R
Sbjct: 600 TGSYTHKKEKLIRDVAHCHGILITSYSYIR 629
Score = 45 (20.9 bits), Expect = 2.9e-52, Sum P(4) = 2.9e-52
Identities = 24/118 (20%), Positives = 46/118 (38%)
Query: 98 DDLEAAVEDEM--TVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGC 155
D LE V ++ +++ + L ++E E +L+ L L + ++IE P
Sbjct: 103 DVLEQGVLQQVDNAIHEASRASQLVDVEKEYRSVLDDLTSCTTSLRQINKIIEQLSPQAA 162
Query: 156 CTEAWKRRAHWVGSQVTSEMRE--SIAGAEDFLQT-----ERPVRRRHGKLLEEGASG 206
+ R+ V Q ++ ++ I + LQ E + H L E+ G
Sbjct: 163 TSRDINRKLDSVKRQKYNKEQQLKKITAKQKHLQAILGGAEVKIELDHASLEEDAEPG 220
Score = 43 (20.2 bits), Expect = 2.9e-52, Sum P(4) = 2.9e-52
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 286 NSDDPFVADAIANEKELALSE-EQRKKFRKVKEEDDANMD 324
+ D+ + + +L L + E+R K EE DA D
Sbjct: 455 DGDEDYYKQRLRRWNKLRLQDKEKRLKLEDDSEESDAEFD 494
Score = 43 (20.2 bits), Expect = 3.0e-22, Sum P(4) = 3.0e-22
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 1306 PDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKL 1343
P+ L+ +S G G N++ K +P E +KL
Sbjct: 1117 PEELSVIS---GNGECSNSSGTGKTSMPSGDESIDEKL 1151
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 333 (122.3 bits), Expect = 3.8e-52, Sum P(3) = 3.8e-52
Identities = 78/197 (39%), Positives = 111/197 (56%)
Query: 1107 HEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKL 1166
H Y + SGKM ++ +L + G K+L+F+QS LD++E ++S K L
Sbjct: 640 HNPDYGDPKRSGKMQVVKQLLLLWHKQGYKALLFTQSRQMLDILEEFIST-----KDPDL 694
Query: 1167 WKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVD 1226
++ R+DG T RQ LV+RFN N+ L++TR G LG+NL ANR+II D
Sbjct: 695 --SHLNYLRMDGTTNIKGRQSLVDRFN---NESFDVFLLTTRVGGLGVNLTGANRIIIFD 749
Query: 1227 GSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVH 1286
WNP+ D+QA RAWR GQ + V YRLM G++EEKIY RQ+ K+ L R++ +
Sbjct: 750 PDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQK 809
Query: 1287 RTISKEEMLHLFEFGDD 1303
R E+ LF G +
Sbjct: 810 RFFKIHELHDLFSLGGE 826
Score = 235 (87.8 bits), Expect = 3.8e-52, Sum P(3) = 3.8e-52
Identities = 65/187 (34%), Positives = 97/187 (51%)
Query: 878 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 937
V DE H I+N ++ + K++K RI L+G+P+QNNL E + + DF+ G LG+ F
Sbjct: 467 VLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLGTLPVF 526
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 997
+ +F PI G + N+T+ V+ + + L + + ++ R V KDLP K V+
Sbjct: 527 QQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADVAKDLPQKKEMVLF 586
Query: 998 VKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL-TK---- 1052
KL+ QR Y FL H +++ N K R F G L +I NHP +L TK
Sbjct: 587 CKLTKYQRSKYLEFL--HSSDLNQIQNGK-RNVLF-GIDILRKICNHPDLLDRDTKRHNP 642
Query: 1053 DKGYPSR 1059
D G P R
Sbjct: 643 DYGDPKR 649
Score = 119 (46.9 bits), Expect = 3.8e-52, Sum P(3) = 3.8e-52
Identities = 38/119 (31%), Positives = 55/119 (46%)
Query: 704 NVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGL 763
N+ K +IP I + L +Q +++++E + Q + G I+ MGL
Sbjct: 277 NIPDAKLNSQFKIPGEIYSLLFNYQKTCVQWLYE-LYQ---------QNCGGIIGDEMGL 326
Query: 764 GKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDV 822
GKT QVIAF+ A+ L LIV P V+ W EF W P PLR +L +
Sbjct: 327 GKTIQVIAFI-AALHHSGLLTGPVLIVCPATVMKQWCNEFQHWWP----PLRTVILHSM 380
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 274 (101.5 bits), Expect = 4.3e-52, Sum P(3) = 4.3e-52
Identities = 67/193 (34%), Positives = 111/193 (57%)
Query: 1117 SGKMVLLLDILTMCSNM--GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY 1174
SGK+ +L +L + + +K ++ S TL++++ ++ R + G
Sbjct: 537 SGKLQVLSKLLAVIHELRPAEKVVLVSNYTQTLNILQ----EVCR--------RHGYGCT 584
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG+T S+RQ++V+ FN + L+S++AG +G+NL + +I+ D WNP D
Sbjct: 585 RLDGQTPISQRQQIVDGFNSKYSSDF-IFLLSSKAGGVGLNLIGGSHLILYDIDWNPATD 643
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV--HRTISKE 1292
+QA+ R WR GQ PV YRL+ GT+EEKIY+RQ++K+ L+ VVD + H S E
Sbjct: 644 IQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLTKTSDHIQFSVE 703
Query: 1293 EMLHLFEFGDDEN 1305
E+ +LF ++ +
Sbjct: 704 ELKNLFTLHENSH 716
Score = 259 (96.2 bits), Expect = 4.3e-52, Sum P(3) = 4.3e-52
Identities = 61/182 (33%), Positives = 99/182 (54%)
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
D+L+CDE H +KN+ TT AL + C++RI LTG+P+QN+L E++ ++DFV G LGS
Sbjct: 322 DLLICDEGHRLKNSAIKTTTALFSLPCEKRIILTGTPVQNDLQEFFSLIDFVNPGILGSL 381
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPKTV 993
+R ++ PI + +++ E+ ++ +R+ L L G F+ R V+ K LPPK
Sbjct: 382 SCYRKIYEEPIITSRQPSASQEEKELGERRACEL-TCLTGLFILRRTQEVINKYLPPKIE 440
Query: 994 FVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGIL-QLTK 1052
V+ + LQ LY++ L+ + S AL ++ NHP +L K
Sbjct: 441 NVVFCRPGALQIELYRKLLNSQA-VRFCLQGLMENSSHLICIGALKKLCNHPCLLFSSVK 499
Query: 1053 DK 1054
+K
Sbjct: 500 EK 501
Score = 150 (57.9 bits), Expect = 4.3e-52, Sum P(3) = 4.3e-52
Identities = 47/140 (33%), Positives = 74/140 (52%)
Query: 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG 783
L+ HQ GI F++E + +R +G G ILA MGLGKT Q I+ ++T G
Sbjct: 192 LRPHQREGIIFLYE-CVMGMRV--NGR--CGAILADEMGLGKTLQCISLIWTLQCQGPYG 246
Query: 784 ----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGG 839
++ LIVTP ++++NW++EF KW SE +++F ++ D + E K
Sbjct: 247 GKPVIKKTLIVTPGSLVNNWRKEFQKWLGSER--IKIFTVDP---DHKVEEFTK-SPLYS 300
Query: 840 VFLIGYTAF-RNLSFGKHVK 858
V +I Y R+L K++K
Sbjct: 301 VLIISYEMLLRSLDQIKNIK 320
>DICTYBASE|DDB_G0282997 [details] [associations]
symbol:rad54 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282997 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281
EMBL:AAFI02000049 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K10875 RefSeq:XP_639303.1
ProteinModelPortal:Q54RP8 STRING:Q54RP8 EnsemblProtists:DDB0232369
GeneID:8623874 KEGG:ddi:DDB_G0282997 InParanoid:Q54RP8 OMA:ERPILAG
ProtClustDB:CLSZ2728985 Uniprot:Q54RP8
Length = 931
Score = 367 (134.2 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 91/269 (33%), Positives = 138/269 (51%)
Query: 747 KSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA---LIVTPVNVLHNWKQEF 803
+ G KG GCILA MGLGK+ Q I L+T ++ G TA +IV P ++ NW QE
Sbjct: 302 RGGFKGNGCILADDMGLGKSIQAITILWTLLKQGPKGESTAKKAVIVAPCTLVGNWGQEL 361
Query: 804 MKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA 863
KW + + + + ++ RA+L K V +I Y R
Sbjct: 362 KKWLGDGVNTVAI---GESTKTGRAKLTELEFGKADVLIISYDQLRIY-----------C 407
Query: 864 REICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 923
+IC G +++CDE H +KN TT+A+ + RR+ L+G+P+QN+L E+Y MV
Sbjct: 408 EDICKITSIG--LVICDEGHRLKNAEIKTTKAVSMIPTARRVILSGTPIQNDLTEFYAMV 465
Query: 924 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 983
+FV G L + F+N + PI ++ +++ E+ +I QRS L F+ R V
Sbjct: 466 NFVNPGVLKNVATFKNVYDAPIVASRNPDASDEEKEIGRQRSLELSRLTSQFILRRTAFV 525
Query: 984 VKKDLPPKTVFVITVKLSPLQRRLYKRFL 1012
+ LPPK +VI KL+PLQ +YK +
Sbjct: 526 NTQYLPPKVEYVIFCKLTPLQLSIYKHLI 554
Score = 260 (96.6 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 59/191 (30%), Positives = 105/191 (54%)
Query: 1116 YSGKMVLLLDILTMCSNM--GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
YS K++ + +L N GDK+++ S TL+++ + K +G +
Sbjct: 615 YSSKLLFVDRLLANIRNSKSGDKTVIISNYTQTLEVLAT-MCKT-----------RGYAY 662
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
++LDG T +++RQ+LV +N+P L+S++AG +G+NL N +++ D WNP
Sbjct: 663 FQLDGSTANAKRQQLVNLYNDPARPEF-VFLLSSKAGGVGLNLIGGNHLVLFDADWNPAN 721
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR-TISKE 1292
D Q++ R WR GQ K V YR GT+EEKI++RQ+TK+ L+ + + + + +
Sbjct: 722 DAQSMARVWREGQKKIVSIYRTFTTGTIEEKIFQRQLTKQALSTSITEGDSDNSPSFDSK 781
Query: 1293 EMLHLFEFGDD 1303
++ +F +D
Sbjct: 782 DLKDIFTLRED 792
Score = 176 (67.0 bits), Expect = 4.5e-31, Sum P(2) = 4.5e-31
Identities = 64/208 (30%), Positives = 92/208 (44%)
Query: 646 EETKRKIAIEKERQERLKSLQVQFSSKSKLMN-SVTLDGDLSAGASIEVLGDAITGYIVN 704
EE K K A R K QV K + S L L+ + + ITG
Sbjct: 212 EEKKEKKAPILAAAHRPKGFQVPVKGLEKAVRLSKPLHNPLAPNSLVLFTPVDITG---- 267
Query: 705 VVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLG 764
E V P +S KL+ HQ G++FM++ ++ + G KG GCILA MGLG
Sbjct: 268 ---ENRIHCVVDPI-LSQKLRPHQREGVQFMFDCLLG----FRGGFKGNGCILADDMGLG 319
Query: 765 KTFQVIAFLYTAMRSVNLGLRTA---LIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 821
K+ Q I L+T ++ G TA +IV P ++ NW QE KW + + + +
Sbjct: 320 KSIQAITILWTLLKQGPKGESTAKKAVIVAPCTLVGNWGQELKKWLGDGVNTVAI---GE 376
Query: 822 VSRDRRAELLAKWRAKGGVFLIGYTAFR 849
++ RA+L K V +I Y R
Sbjct: 377 STKTGRAKLTELEFGKADVLIISYDQLR 404
>GENEDB_PFALCIPARUM|PF08_0126 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54,
putative" species:5833 "Plasmodium falciparum" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 369 (135.0 bits), Expect = 2.7e-51, Sum P(2) = 2.7e-51
Identities = 105/363 (28%), Positives = 173/363 (47%)
Query: 739 IIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNV 795
+ + + +K DK GCILA MGLGKT Q I LYT ++ +R LI+ P ++
Sbjct: 144 VFECLMNIKD-DKISGCILADDMGLGKTLQSITVLYTLLKQGFHKKCAVRRCLILCPASL 202
Query: 796 LHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLA--KWRAKGGVFLIGYTAFRNLSF 853
++NW E KW P+ V + D ++++ L K+ + V + Y FR
Sbjct: 203 INNWNDEISKWIPNRCN---VTCVNDNAKEKIVSKLEGFKYDIQSTVLICSYECFR---I 256
Query: 854 GKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQ 913
D++ D+++CDEAH +KN + T ++ + ++R+ L+G+P+Q
Sbjct: 257 NNEFLDKSSI-----------DMIICDEAHRLKNDKTKTYTSIYNLTAKKRLLLSGTPIQ 305
Query: 914 NNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLK 973
N+L E+Y ++ + FR +F NPI G+ ++T ++ +I ++R L
Sbjct: 306 NDLGEFYALISLCNPDLFDDINLFRKKFANPILIGRDKDATEKEQEIASERLTELSNITN 365
Query: 974 GFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFL-DLHGFTNDRVSNEKIRKSFF 1032
F+ R N++ K LP K + I +KL+P+Q LY FL D ND +N K+ +
Sbjct: 366 KFILRRTNNLLSKVLPVKYLINIFIKLNPIQEALYVLFLKDKKILKNDNTNN-KV--NVL 422
Query: 1033 AGYQALAQIWNHPGILQLT--KDKGYPSRXXXXXXXXXXNMDYNVVI---GEKPRNMNDF 1087
+ L +I NHP +L + K+ G + M N+ I G K N ND
Sbjct: 423 INIKKLEKICNHPLLLNVNDIKEIGQVT-LWKLIEDVIFEMQTNMKICNRGNKRDNKNDS 481
Query: 1088 LQG 1090
G
Sbjct: 482 KSG 484
Score = 260 (96.6 bits), Expect = 2.7e-51, Sum P(2) = 2.7e-51
Identities = 63/188 (33%), Positives = 104/188 (55%)
Query: 1115 DYSGKMVLLLDIL-TMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
++S K +LL +L + N DK ++ S TLD +E + ++K +
Sbjct: 607 NFSCKFLLLHFLLKNIKQNTNDKVVIVSNYTQTLDYMEILCKE--------NMYK----F 654
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG +R K++ F + + L+S+++G GINL S+NR+I++D WNP
Sbjct: 655 VRLDGGINIKKRHKVINDFTHSAD--IFIFLLSSKSGGCGINLISSNRLILLDPDWNPAN 712
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT-ISKE 1292
D QA+ R WR GQ K + YRL GT++EK+Y+RQ++K+GL+ +V + + +S E
Sbjct: 713 DKQALARVWREGQKKICYIYRLFCTGTIDEKVYQRQISKDGLSNMIVTTTNLSKDQMSDE 772
Query: 1293 EMLHLFEF 1300
+ LF +
Sbjct: 773 NVKKLFNY 780
Score = 170 (64.9 bits), Expect = 4.4e-30, Sum P(2) = 4.4e-30
Identities = 43/143 (30%), Positives = 73/143 (51%)
Query: 712 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIA 771
+ + + ++ L+ HQ G++F++E ++ +K DK GCILA MGLGKT Q I
Sbjct: 121 DKIEVDPILAQYLREHQREGVQFVFECLMN----IKD-DKISGCILADDMGLGKTLQSIT 175
Query: 772 FLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 828
LYT ++ +R LI+ P ++++NW E KW P+ V + D ++++
Sbjct: 176 VLYTLLKQGFHKKCAVRRCLILCPASLINNWNDEISKWIPNRCN---VTCVNDNAKEKIV 232
Query: 829 ELLA--KWRAKGGVFLIGYTAFR 849
L K+ + V + Y FR
Sbjct: 233 SKLEGFKYDIQSTVLICSYECFR 255
Score = 48 (22.0 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 17/93 (18%), Positives = 38/93 (40%)
Query: 167 VGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSD 226
V ++S ++ D T + + I N+ + N S+
Sbjct: 489 VDKSMSSISNNNMKNGNDMNNTNNNTNNNTNNNTNNNTNNNINSNINNNINNNIN---SN 545
Query: 227 INWNSVNKIFSGDVSEKCAAFGSKHWASVYLAS 259
IN N++N + + + +C + G+++ AS Y+ +
Sbjct: 546 IN-NNINSNMNNNTNLRCGSRGNQNDASGYVGN 577
Score = 37 (18.1 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 471 ENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHP-ILNVIV 513
E + A++ +++ KF NN+ +V P ++N+ +
Sbjct: 347 EKEQEIASERLTELSNITNKFILRRTNNLLSKVLPVKYLINIFI 390
>UNIPROTKB|Q8IAN4 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 369 (135.0 bits), Expect = 2.7e-51, Sum P(2) = 2.7e-51
Identities = 105/363 (28%), Positives = 173/363 (47%)
Query: 739 IIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS---VNLGLRTALIVTPVNV 795
+ + + +K DK GCILA MGLGKT Q I LYT ++ +R LI+ P ++
Sbjct: 144 VFECLMNIKD-DKISGCILADDMGLGKTLQSITVLYTLLKQGFHKKCAVRRCLILCPASL 202
Query: 796 LHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLA--KWRAKGGVFLIGYTAFRNLSF 853
++NW E KW P+ V + D ++++ L K+ + V + Y FR
Sbjct: 203 INNWNDEISKWIPNRCN---VTCVNDNAKEKIVSKLEGFKYDIQSTVLICSYECFR---I 256
Query: 854 GKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQ 913
D++ D+++CDEAH +KN + T ++ + ++R+ L+G+P+Q
Sbjct: 257 NNEFLDKSSI-----------DMIICDEAHRLKNDKTKTYTSIYNLTAKKRLLLSGTPIQ 305
Query: 914 NNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLK 973
N+L E+Y ++ + FR +F NPI G+ ++T ++ +I ++R L
Sbjct: 306 NDLGEFYALISLCNPDLFDDINLFRKKFANPILIGRDKDATEKEQEIASERLTELSNITN 365
Query: 974 GFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFL-DLHGFTNDRVSNEKIRKSFF 1032
F+ R N++ K LP K + I +KL+P+Q LY FL D ND +N K+ +
Sbjct: 366 KFILRRTNNLLSKVLPVKYLINIFIKLNPIQEALYVLFLKDKKILKNDNTNN-KV--NVL 422
Query: 1033 AGYQALAQIWNHPGILQLT--KDKGYPSRXXXXXXXXXXNMDYNVVI---GEKPRNMNDF 1087
+ L +I NHP +L + K+ G + M N+ I G K N ND
Sbjct: 423 INIKKLEKICNHPLLLNVNDIKEIGQVT-LWKLIEDVIFEMQTNMKICNRGNKRDNKNDS 481
Query: 1088 LQG 1090
G
Sbjct: 482 KSG 484
Score = 260 (96.6 bits), Expect = 2.7e-51, Sum P(2) = 2.7e-51
Identities = 63/188 (33%), Positives = 104/188 (55%)
Query: 1115 DYSGKMVLLLDIL-TMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
++S K +LL +L + N DK ++ S TLD +E + ++K +
Sbjct: 607 NFSCKFLLLHFLLKNIKQNTNDKVVIVSNYTQTLDYMEILCKE--------NMYK----F 654
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG +R K++ F + + L+S+++G GINL S+NR+I++D WNP
Sbjct: 655 VRLDGGINIKKRHKVINDFTHSAD--IFIFLLSSKSGGCGINLISSNRLILLDPDWNPAN 712
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT-ISKE 1292
D QA+ R WR GQ K + YRL GT++EK+Y+RQ++K+GL+ +V + + +S E
Sbjct: 713 DKQALARVWREGQKKICYIYRLFCTGTIDEKVYQRQISKDGLSNMIVTTTNLSKDQMSDE 772
Query: 1293 EMLHLFEF 1300
+ LF +
Sbjct: 773 NVKKLFNY 780
Score = 170 (64.9 bits), Expect = 4.4e-30, Sum P(2) = 4.4e-30
Identities = 43/143 (30%), Positives = 73/143 (51%)
Query: 712 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIA 771
+ + + ++ L+ HQ G++F++E ++ +K DK GCILA MGLGKT Q I
Sbjct: 121 DKIEVDPILAQYLREHQREGVQFVFECLMN----IKD-DKISGCILADDMGLGKTLQSIT 175
Query: 772 FLYTAMRS---VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 828
LYT ++ +R LI+ P ++++NW E KW P+ V + D ++++
Sbjct: 176 VLYTLLKQGFHKKCAVRRCLILCPASLINNWNDEISKWIPNRCN---VTCVNDNAKEKIV 232
Query: 829 ELLA--KWRAKGGVFLIGYTAFR 849
L K+ + V + Y FR
Sbjct: 233 SKLEGFKYDIQSTVLICSYECFR 255
Score = 48 (22.0 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 17/93 (18%), Positives = 38/93 (40%)
Query: 167 VGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSD 226
V ++S ++ D T + + I N+ + N S+
Sbjct: 489 VDKSMSSISNNNMKNGNDMNNTNNNTNNNTNNNTNNNTNNNINSNINNNINNNIN---SN 545
Query: 227 INWNSVNKIFSGDVSEKCAAFGSKHWASVYLAS 259
IN N++N + + + +C + G+++ AS Y+ +
Sbjct: 546 IN-NNINSNMNNNTNLRCGSRGNQNDASGYVGN 577
Score = 37 (18.1 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 471 ENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHP-ILNVIV 513
E + A++ +++ KF NN+ +V P ++N+ +
Sbjct: 347 EKEQEIASERLTELSNITNKFILRRTNNLLSKVLPVKYLINIFI 390
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 328 (120.5 bits), Expect = 3.2e-51, Sum P(4) = 3.2e-51
Identities = 85/228 (37%), Positives = 117/228 (51%)
Query: 1106 LHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGK 1165
L E + SGKM+++ +L + G + L+FSQS LD++E +L R K
Sbjct: 816 LEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFL----RAQKYSY 871
Query: 1166 LWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIV 1225
L ++DG T + RQ L+ R+NE + + L++TR G LG+NL ANRVII
Sbjct: 872 L--------KMDGTTTIASRQPLITRYNEDAS--IFVFLLTTRVGGLGVNLTGANRVIIY 921
Query: 1226 DGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV 1285
D WNP+ D QA RAWR GQ K V YRL+ GT+EEKIY RQ+ K+ L RV+ +
Sbjct: 922 DPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQ 981
Query: 1286 HRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSS-QNTNCALKHKL 1332
R ++ LF + + G GS Q LK KL
Sbjct: 982 RRFFKSNDLYELFTLTSPDTSQSTETSAIFAGTGSDVQTPKRHLKRKL 1029
Score = 325 (119.5 bits), Expect = 3.2e-51, Sum P(4) = 3.2e-51
Identities = 100/307 (32%), Positives = 158/307 (51%)
Query: 754 GCILAHTMGLGKTFQVIAFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFM 804
G IL MGLGKT Q+IAFL Y+ +R+ N GL +IV P V+H W +EF
Sbjct: 516 GGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTIIVCPTTVMHQWVKEFH 575
Query: 805 KWRPSELKPLRVFMLEDV-SRDRRAELLAKWRAK-GGVFLIGYTAFRNLSFGKHVKDRNM 862
W P P RV +L + S + E L + A G+ + Y+ R + +D ++
Sbjct: 576 TWWP----PFRVAILHETGSFTHKKEKLVRDIAHCHGILITSYSYIRLM------QD-DI 624
Query: 863 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCM 922
+R H ++ DE H I+N A T A KQ + RI L+GSP+QNNL E + +
Sbjct: 625 SRHDWH-------YVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQNNLRELWSL 677
Query: 923 VDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDM 981
DF+ G LG+ F +F PI G ++N++ VK + + +L + + ++ +RM
Sbjct: 678 FDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS 737
Query: 982 NV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ 1040
+V + LP K V+ +L+ Q ++Y+ F+D R+ N +++ F+G AL +
Sbjct: 738 DVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVY--RILNGEMQ--IFSGLVALRK 793
Query: 1041 IWNHPGI 1047
I NHP +
Sbjct: 794 ICNHPDL 800
Score = 153 (58.9 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
Identities = 50/150 (33%), Positives = 72/150 (48%)
Query: 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 770
+E ++P + KL +Q G+R++WE Q G IL MGLGKT Q+I
Sbjct: 483 DEGFKMPGFLFKKLFKYQQTGVRWLWELHCQQA----------GGILGDEMGLGKTIQII 532
Query: 771 AFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 821
AFL Y+ +R+ N GL +IV P V+H W +EF W P P RV +L +
Sbjct: 533 AFLAGLSYSKIRTRGSNYRFEGLGPTIIVCPTTVMHQWVKEFHTWWP----PFRVAILHE 588
Query: 822 V-SRDRRAELLAKWRAK-GGVFLIGYTAFR 849
S + E L + A G+ + Y+ R
Sbjct: 589 TGSFTHKKEKLVRDIAHCHGILITSYSYIR 618
Score = 41 (19.5 bits), Expect = 3.2e-51, Sum P(4) = 3.2e-51
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 293 ADAIANEKELALSEEQRKKFRKVKEEDD 320
AD +E+ LS +R+K V++ DD
Sbjct: 389 ADLSEDERRRVLSHRKRQKKVTVQDIDD 416
Score = 39 (18.8 bits), Expect = 3.2e-51, Sum P(4) = 3.2e-51
Identities = 17/75 (22%), Positives = 28/75 (37%)
Query: 98 DDLEAAV--EDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGC 155
D LE V + + + + A L + E E +L+ L L + ++IE P
Sbjct: 102 DVLEQGVLRQVDSAIQEASRTAQLADAEKEYRSVLDDLTSCTTSLRQIDKIIEQLSPQAA 161
Query: 156 CTEAWKRRAHWVGSQ 170
R+ V Q
Sbjct: 162 TNRDINRKLDSVKRQ 176
Score = 38 (18.4 bits), Expect = 6.6e-51, Sum P(4) = 6.6e-51
Identities = 16/67 (23%), Positives = 25/67 (37%)
Query: 646 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNV 705
EE + + ER + L + K + + D S+G E G G V
Sbjct: 381 EEPQEAAGADLSEDERRRVLSHRKRQKKVTVQDIDDDFFPSSGEEAEGTGGGGGGRKVAR 440
Query: 706 VREKGEE 712
R+ G+E
Sbjct: 441 CRDDGDE 447
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 318 (117.0 bits), Expect = 7.8e-51, Sum P(3) = 7.8e-51
Identities = 73/200 (36%), Positives = 114/200 (57%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKM ++ +L + G K+L+F+Q LD++E ++ L G ++ R+
Sbjct: 735 SGKMQVVRSLLELWKETGHKTLLFAQHRIMLDILEKFVKSL-----------SGFNYRRM 783
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T RQ +V+ FN+ + V L++T+ G LG+NL A+RVII D WNP+ D+Q
Sbjct: 784 DGTTPIQHRQTMVDEFNKDPDLHV--FLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQ 841
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLH 1296
A RAWR GQ + V YRLM GT+EEKIY RQ+ K+ L +++ + +T ++
Sbjct: 842 ARERAWRLGQKRDVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRQTFQLSDLYD 901
Query: 1297 LFEFGDD-ENPDPLTAVSKE 1315
LF G++ + P + + KE
Sbjct: 902 LFALGEEGQGPTETSKLFKE 921
Score = 312 (114.9 bits), Expect = 7.8e-51, Sum P(3) = 7.8e-51
Identities = 102/350 (29%), Positives = 161/350 (46%)
Query: 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 770
+ RIP I L +Q G+++MWE Q + G I+ MGLGKT Q I
Sbjct: 385 DNGYRIPGDIHPLLFDYQKTGVQWMWELHQQQV----------GGIIGDEMGLGKTIQAI 434
Query: 771 AFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP----SELKPLRVFMLEDVSRDR 826
AFL S L + ++V P V+ W EF +W P S L M+ S
Sbjct: 435 AFLAGLHYSKRL-TKPIIVVCPATVMKQWVNEFHRWWPPFRVSILHTSGSGMVNIKSESS 493
Query: 827 RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV-------- 878
R + L G G A R + + V++ ++ LQ +L+
Sbjct: 494 REDALMYGTYWSGGSSSGLKAARKV-VKRVVEEGHVLVTTYSGLQSYASLLIPVEWGGTI 552
Query: 879 CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFR 938
DE H I+N T K+++ RI L+G+P+QNNL E + + DFV LG+ FR
Sbjct: 553 LDEGHKIRNPNTSITMHAKELRTPHRIILSGTPMQNNLTELWSLFDFVFPMRLGTLVNFR 612
Query: 939 NRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDMNVVKKDLPPKTVFVIT 997
N+F+ PI G + N+++ V+ + + L + + ++ QR ++V DLP K+ V+
Sbjct: 613 NQFEFPIRQGGYANASNLQVQTAAKCAETLKDAISPYLLQRFKIDVAA-DLPKKSEQVLF 671
Query: 998 VKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 1047
+L+ QR+ Y+ FL + + S + R+ G L +I NHP +
Sbjct: 672 CRLTKPQRQAYEAFLG----SEEMQSILRGRRQVLYGVDILRKICNHPDL 717
Score = 47 (21.6 bits), Expect = 7.8e-51, Sum P(3) = 7.8e-51
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 183 EDFLQTERPVRRRHGKLLEE 202
EDF+ E+PVR + K +E
Sbjct: 293 EDFVTEEKPVRAKKAKSSDE 312
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 328 (120.5 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 98/307 (31%), Positives = 156/307 (50%)
Query: 754 GCILAHTMGLGKTFQVIAFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFM 804
G IL MGLGKT Q+IAFL Y+ +R+ N GL +IV P V+H W +EF
Sbjct: 522 GGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFH 581
Query: 805 KWRPSELKPLRVFMLEDVSR--DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNM 862
W P P RV +L + +++ +L+ + + G+ + Y+ R + H D
Sbjct: 582 TWWP----PFRVAILHETGSYTNKKVKLIREIASCHGILITSYSYIRLMQDNIHSYD--- 634
Query: 863 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCM 922
H ++ DE H I+N A T A KQ + RI L+GSP+QNNL E + +
Sbjct: 635 ----WH-------YVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLKELWSL 683
Query: 923 VDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDM 981
DFV G LG+ F +F PI G ++N++ VK + + +L + + ++ +RM
Sbjct: 684 FDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDAINPYLLRRMKA 743
Query: 982 NV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ 1040
+V + LP K V+ +L+ QR++Y+ F+D ++ N ++ F+G AL +
Sbjct: 744 DVKMSLSLPDKNEQVLFCRLTDEQRQVYQNFIDSKEVY--QILNGDMQ--VFSGLVALRK 799
Query: 1041 IWNHPGI 1047
I NHP +
Sbjct: 800 ICNHPDL 806
Score = 311 (114.5 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 78/217 (35%), Positives = 112/217 (51%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKM+++ +L + G + L F+QS L ++E +L + + R+
Sbjct: 834 SGKMIVVESLLKIWHKQGHRVLFFTQSRQMLQILEVFLRD------------RNYSYLRM 881
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T + RQ L+ R+NE +K + L++TR G +G+NL A+RVII D WNP+ D Q
Sbjct: 882 DGTTTIASRQPLITRYNE--DKSIFIFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQ 939
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLH 1296
A RAWR GQ K V YRL+ GT+EEKIY RQ+ K+ L RV+ + R ++
Sbjct: 940 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYE 999
Query: 1297 LFEFGDDENPDPLTAVSKENGQGSS-QNTNCALKHKL 1332
LF + + G GS Q LK KL
Sbjct: 1000 LFTLSSPDVSQGTETSAIFAGTGSDVQVPKHQLKRKL 1036
Score = 166 (63.5 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 50/160 (31%), Positives = 77/160 (48%)
Query: 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 770
EE ++P + KL +Q G+R++WE Q G IL MGLGKT Q+I
Sbjct: 489 EEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQA----------GGILGDEMGLGKTIQII 538
Query: 771 AFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 821
AFL Y+ +R+ N GL +IV P V+H W +EF W P P RV +L +
Sbjct: 539 AFLAGLSYSKIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWWP----PFRVAILHE 594
Query: 822 VSR--DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKD 859
+++ +L+ + + G+ + Y+ R + H D
Sbjct: 595 TGSYTNKKVKLIREIASCHGILITSYSYIRLMQDNIHSYD 634
Score = 47 (21.6 bits), Expect = 2.1e-21, Sum P(3) = 2.1e-21
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 799 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVF 841
+KQ KW+ LK + E++S + E ++ G +F
Sbjct: 457 YKQRLRKWQRERLKDKERSVAEELSDESDTEFEEGFKVPGFLF 499
Score = 43 (20.2 bits), Expect = 6.8e-21, Sum P(3) = 6.8e-21
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 693 VLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQS--IRKVKSGD 750
VL DAI Y++ ++ + ++ +P L R +++N I S + ++ +GD
Sbjct: 728 VLRDAINPYLLRRMKADVKMSLSLPDKNEQVLFCRLTDEQRQVYQNFIDSKEVYQILNGD 787
Score = 40 (19.1 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 741 QSIRKVKSGDKGLGCILAHTMGLGKTFQV 769
Q ++K+K+ K L +L T L K ++
Sbjct: 186 QQLKKIKAKQKRLQAVLGGTEILDKVNEI 214
Score = 40 (19.1 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 1176 LDGRTESSERQKLVERFNEPLNKRVK--CTLISTRAGS 1211
L G SSE K+ E +E N+ + +L+ AGS
Sbjct: 1129 LPGGAGSSENAKVTEEEHEVANENAEGDFSLLCGAAGS 1166
Score = 39 (18.8 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 20/82 (24%), Positives = 32/82 (39%)
Query: 107 EMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAW---KRR 163
E +E+ E A E +S + L L G G Y + + G T+ + +
Sbjct: 382 EPEAVEEEEEQASSHAENDSDYELRNLSGKG-----KYLVKRDSKDAGNDTDYFPSSEEE 436
Query: 164 AHWVGSQVTSEMRESIAGAEDF 185
H VG + R+ G ED+
Sbjct: 437 EHTVGKRKVKRWRDD--GDEDY 456
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 325 (119.5 bits), Expect = 4.6e-50, Sum P(5) = 4.6e-50
Identities = 83/231 (35%), Positives = 118/231 (51%)
Query: 1104 DLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQ 1163
D L E + SGKM+++ +L + G + L+FSQS L ++E +L R K
Sbjct: 819 DGLEEEQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLHILEVFL----RAHKY 874
Query: 1164 GKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVI 1223
L ++DG T + RQ L+ ++NE + + L++TR G LG+NL ANRVI
Sbjct: 875 SYL--------KMDGTTTIASRQPLITKYNEDTS--IFVFLLTTRVGGLGVNLTGANRVI 924
Query: 1224 IVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQ 1283
I D WNP+ D QA RAWR GQ K V YRL+ GT+EEKIY RQ+ K+ L RV+
Sbjct: 925 IYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDP 984
Query: 1284 QVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSS-QNTNCALKHKLP 1333
+ R ++ LF + + G GS+ Q C K + P
Sbjct: 985 KQRRFFKSNDLYELFTLTSPDASQGTETSAIFAGTGSNIQTLKCHFKKRTP 1035
Score = 324 (119.1 bits), Expect = 4.6e-50, Sum P(5) = 4.6e-50
Identities = 102/307 (33%), Positives = 154/307 (50%)
Query: 754 GCILAHTMGLGKTFQVIAFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFM 804
G IL MGLGKT Q+IAFL Y+ +R+ N GL LIV P V+H W +EF
Sbjct: 521 GGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTLIVCPTTVMHQWVKEFH 580
Query: 805 KWRPSELKPLRVFMLEDV-SRDRRAELLAKWRAK-GGVFLIGYTAFRNLSFGKHVKDRNM 862
W P P RV +L + S R E L + GV + Y+ R + +D ++
Sbjct: 581 TWWP----PFRVAILHETGSCAHRKERLVRDIVHCHGVLITSYSYIRLM------QD-DI 629
Query: 863 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCM 922
+R H ++ DE H I+N A T A KQ + RI L+GSP+QNNL E + +
Sbjct: 630 SRHDWH-------YVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSL 682
Query: 923 VDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDM 981
DF G LG+ F +F PI G ++N++ VK + + +L + + ++ +RM
Sbjct: 683 FDFTFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS 742
Query: 982 NV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ 1040
+V + LP K V+ +L+ Q ++Y+ F+D R+ N + F+G AL +
Sbjct: 743 DVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKAVY--RILNGE--NQIFSGLVALRK 798
Query: 1041 IWNHPGI 1047
I NHP +
Sbjct: 799 ICNHPDL 805
Score = 156 (60.0 bits), Expect = 6.6e-33, Sum P(5) = 6.6e-33
Identities = 52/150 (34%), Positives = 71/150 (47%)
Query: 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 770
+E ++P + KL +Q G+R++WE Q G IL MGLGKT Q+I
Sbjct: 488 DEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQA----------GGILGDEMGLGKTIQII 537
Query: 771 AFL----YTAMRS--VNL---GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 821
AFL Y+ +R+ N GL LIV P V+H W +EF W P P RV +L +
Sbjct: 538 AFLAGLSYSKIRTRGSNYRFEGLGPTLIVCPTTVMHQWVKEFHTWWP----PFRVAILHE 593
Query: 822 V-SRDRRAELLAKWRAK-GGVFLIGYTAFR 849
S R E L + GV + Y+ R
Sbjct: 594 TGSCAHRKERLVRDIVHCHGVLITSYSYIR 623
Score = 48 (22.0 bits), Expect = 8.7e-22, Sum P(4) = 8.7e-22
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 799 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVF 841
+KQ +W L+ LED S + AE ++ G +F
Sbjct: 456 YKQRLRRWNRLRLQDKEKLKLEDDSEESDAEFDEGFKVPGFLF 498
Score = 45 (20.9 bits), Expect = 4.6e-50, Sum P(5) = 4.6e-50
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 286 NSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMD 324
+ D+ + + L L ++++ K EE DA D
Sbjct: 450 DGDEDYYKQRLRRWNRLRLQDKEKLKLEDDSEESDAEFD 488
Score = 37 (18.1 bits), Expect = 4.6e-50, Sum P(5) = 4.6e-50
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 23 DSFIVDSESDEPSISGQDDG 42
D F SE ++ ++ G+ G
Sbjct: 422 DDFFPSSEEEDEAVEGRGGG 441
Score = 37 (18.1 bits), Expect = 4.6e-50, Sum P(5) = 4.6e-50
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 1316 NGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKH 1351
+GQ S+Q A + KL ++ +L+ +L H
Sbjct: 1424 DGQASTQEILQAFESKLSVAQSCVFRELLRNLCNFH 1459
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 326 (119.8 bits), Expect = 4.8e-50, Sum P(3) = 4.8e-50
Identities = 98/312 (31%), Positives = 152/312 (48%)
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 813
G I+ MGLGKT Q+++FL + S LG ALIV P +L NW +EF KW P P
Sbjct: 815 GGIVGDEMGLGKTVQIVSFLASLHYSRRLG-GPALIVAPATLLSNWIKEFHKWWP----P 869
Query: 814 LRVFMLEDVSR-------DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREI 866
RV + + +++ K KG + L T F ++ + +
Sbjct: 870 FRVGLFHSSGSGGGGNDGSDKEDIVKKIAEKGHILL---TTFDSIRINQEI--------- 917
Query: 867 CHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV 926
L+ + ++ DE H I+N A+ T + KQ++ R+ L+GSP+QN L E + + DFV
Sbjct: 918 --LLKYHWEYVILDEGHKIRNPDAEITLSCKQLQTPHRVILSGSPIQNKLTELWSLFDFV 975
Query: 927 REGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK 986
G LG+ F+++F PI G N++ V+ + + L + + ++ R + V K
Sbjct: 976 FPGRLGTLPIFKSQFSLPISVGGFANASPIQVQAAYKCAVALRDLISPYMLRRVKSDVLK 1035
Query: 987 DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPG 1046
LP K V+ L+P Q +LY FLD +ND S R++ G L +I NHP
Sbjct: 1036 SLPSKNEQVLMCPLTPFQEKLYLEFLD----SNDIKSVLDGRRNALYGIDILKKICNHPD 1091
Query: 1047 ILQL-TKDKGYP 1057
IL + D+ P
Sbjct: 1092 ILHMDASDEDRP 1103
Score = 299 (110.3 bits), Expect = 4.8e-50, Sum P(3) = 4.8e-50
Identities = 71/192 (36%), Positives = 108/192 (56%)
Query: 1109 HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1168
H Y ++ S K+ ++ IL + GDK L+F Q+ LD++E Y+ R Q
Sbjct: 1104 HDYGNIERSAKLKVVETILPLWFKQGDKVLLFCQTRQMLDIVEQYI----RDSTQF---- 1155
Query: 1169 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1228
++ R+DG T +RQ LVE+FN ++ + L++T+ G LG+NL ANRVI+ D
Sbjct: 1156 ---NYLRMDGTTSIRQRQCLVEQFN--IDPSLFIFLLTTKVGGLGLNLTGANRVILFDPD 1210
Query: 1229 WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT 1288
WNP+ D+QA R +R GQ K V YRL+ GT+EEKIY RQ+ K+ L +++ + R
Sbjct: 1211 WNPSTDMQARERVYRIGQKKAVTIYRLITLGTIEEKIYHRQIYKQFLTNKILKDPRQKRF 1270
Query: 1289 ISKEEMLHLFEF 1300
+ LF +
Sbjct: 1271 FKSKHFKDLFTY 1282
Score = 135 (52.6 bits), Expect = 4.5e-30, Sum P(3) = 4.5e-30
Identities = 40/106 (37%), Positives = 54/106 (50%)
Query: 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 770
+E +IP I L +QV +R+++E Q G I+ MGLGKT Q++
Sbjct: 782 DENFKIPFDIYKNLFEYQVTCVRWLYELHCQET----------GGIVGDEMGLGKTVQIV 831
Query: 771 AFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 816
+FL + S LG ALIV P +L NW +EF KW P P RV
Sbjct: 832 SFLASLHYSRRLG-GPALIVAPATLLSNWIKEFHKWWP----PFRV 872
Score = 50 (22.7 bits), Expect = 4.8e-50, Sum P(3) = 4.8e-50
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 649 KRKIAIEKER--QERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVV 706
K+K+ EKE+ Q+++K +Q KL D+ S+ + D Y N
Sbjct: 415 KKKVLTEKEKKKQKKMKKYSIQRDPPKKLQEFYDDFNDME---SLNISEDDNDDYNNNNN 471
Query: 707 REKGEE 712
E+ EE
Sbjct: 472 EEENEE 477
Score = 41 (19.5 bits), Expect = 4.9e-48, Sum P(4) = 4.9e-48
Identities = 7/19 (36%), Positives = 16/19 (84%)
Query: 299 EKELALSEEQRKKFRKVKE 317
+K+ L+E+++KK +K+K+
Sbjct: 414 KKKKVLTEKEKKKQKKMKK 432
Score = 39 (18.8 bits), Expect = 4.9e-48, Sum P(4) = 4.9e-48
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 367 KSLSNKKTDDGDMPGNNNE 385
+SL+ + D+ D NNNE
Sbjct: 454 ESLNISEDDNDDYNNNNNE 472
Score = 38 (18.4 bits), Expect = 8.6e-49, Sum P(3) = 8.6e-49
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 298 NEKEL--ALSEEQRKKFRKVKEEDD 320
N+K + +S +RK+ + V ++DD
Sbjct: 608 NKKSIKSTISNNKRKRKQDVDDDDD 632
>CGD|CAL0004359 [details] [associations]
symbol:RDH54 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0015616 "DNA translocase activity" evidence=IEA] [GO:0032392
"DNA geometric change" evidence=IEA] [GO:0045144 "meiotic sister
chromatid segregation" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] [GO:0030491 "heteroduplex
formation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004359 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000059 EMBL:AACQ01000058 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
RefSeq:XP_717090.1 RefSeq:XP_717169.1 ProteinModelPortal:Q5A5N2
STRING:Q5A5N2 GeneID:3641231 GeneID:3641299 KEGG:cal:CaO19.12827
KEGG:cal:CaO19.5367 Uniprot:Q5A5N2
Length = 796
Score = 311 (114.5 bits), Expect = 9.7e-49, Sum P(2) = 9.7e-49
Identities = 88/310 (28%), Positives = 147/310 (47%)
Query: 714 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 773
V I ++ L+ HQV G++FM+E + R G G GC+LA MGLGKT I +
Sbjct: 185 VNIDPHLAKVLRPHQVEGVKFMYE-CLMGYR----GFGGHGCLLADEMGLGKTLMTITTI 239
Query: 774 YTAMRS---VNLG--LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 828
+T ++ + G + L+V PV ++ NW+QEF KW + L V L + + +
Sbjct: 240 WTLLKQNPFMEKGAVVNKVLVVCPVTLISNWRQEFRKWLGAN--KLNVLTLNNPMSNEKQ 297
Query: 829 ELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNT 888
++L K V+ + + L H + + + D+LVCDE H +KN+
Sbjct: 298 DILNF--GKLNVYQVLVVNYEKLV--AHFDELSAVKF---------DLLVCDEGHRLKNS 344
Query: 889 RADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENG 948
L ++ ++I LTG+P+QN L+E++ ++ F+ G L F+ F PI
Sbjct: 345 ANKVLNNLIKLNIPKKIVLTGTPIQNELVEFHTLISFLNPGVLPELKLFQRNFITPISRA 404
Query: 949 QHTNSTSEDVKIMNQR-SHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRL 1007
+ N +VK + S L E + F+ R ++ L KT ++ V + LQ +L
Sbjct: 405 RDINCFDPEVKKRGEEISQQLIELTQSFILRRTQAILANYLTQKTDILLFVPPTSLQLKL 464
Query: 1008 YKRFLDLHGF 1017
+ +L F
Sbjct: 465 FDYITNLKKF 474
Score = 289 (106.8 bits), Expect = 9.7e-49, Sum P(2) = 9.7e-49
Identities = 72/213 (33%), Positives = 117/213 (54%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ +L+ +L +++G+K ++ S TLDL+E L K+ + RL
Sbjct: 516 SGKINILVPLLLEIASLGEKIVLISNYTKTLDLLEQVLRKV------------SLTFSRL 563
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T ++ R KLV +FN N + L+S+++G +GINL A+R+I+ D WNP DLQ
Sbjct: 564 DGSTPNNVRSKLVNQFNT--NPDINVFLLSSKSGGMGINLVGASRLILFDNDWNPATDLQ 621
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT--ISKEEM 1294
++ R R GQ KP F YRL G ++EKI++RQ+ K L+++ +D ++ +++
Sbjct: 622 SMSRIHRDGQLKPCFIYRLFTTGCIDEKIFQRQLVKNKLSSKFLDNDATSKSDVFDNDDL 681
Query: 1295 LHLFEFGDD---ENPDPLTAVSKENGQGSSQNT 1324
++FE D L V + +G SQ T
Sbjct: 682 KNIFEIDTSTISNTHDLLECVCEGDGSMLSQPT 714
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 319 (117.4 bits), Expect = 1.6e-48, Sum P(2) = 1.6e-48
Identities = 82/235 (34%), Positives = 129/235 (54%)
Query: 1104 DLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQ 1163
D + +HT ++ SGK+ ++ ++ G ++L+FSQS LD++E L +
Sbjct: 463 DNISDHTL--IEESGKLQFVVSLMECLREEGHRTLIFSQSRKMLDIMERVLRN-----RN 515
Query: 1164 GKLWKKGKDWYRLDGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1222
+L RLDG T+ +ER+K + F +KR L++T+ G +GI L ANRV
Sbjct: 516 FRL-------LRLDGTVTQLAEREKRISLFQT--DKRYTIFLLTTQVGGVGITLTGANRV 566
Query: 1223 IIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVV-D 1281
+I D SWNP D QA+ RA+R GQT+ V YRL+ GT+EEKIY+RQV K+ L + D
Sbjct: 567 VIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGD 626
Query: 1282 RQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSH 1336
++ R SK+E+ LF+ D + + + Q S+ ++ +L H + H
Sbjct: 627 KKNPFRYFSKQELRELFKLEDTRSSSTQQQLQAMHAQ--SRRSDTSLDHHIARLH 679
Score = 287 (106.1 bits), Expect = 1.6e-48, Sum P(2) = 1.6e-48
Identities = 79/237 (33%), Positives = 122/237 (51%)
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 813
G ILA MGLGKT QVI+FL + M L T L+V P +++ NW +EF KW P
Sbjct: 126 GGILADDMGLGKTIQVISFL-SGMYDAELANHT-LLVMPTSLIKNWVREFAKWTPG---- 179
Query: 814 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
+RV S+ R L + + KGGV + T ++ L N RE
Sbjct: 180 MRVKEFHGSSKTERNRNLERIQRKGGVII---TTYQMLINNYEQLGSNGHREFKW----- 231
Query: 874 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 932
D ++ DEAH IK + T ++ + + R+ LTG+P+QNNL E + + DF +G LG
Sbjct: 232 -DYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMWALFDFACQGSLLG 290
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDL 988
+S F+ ++NPI + ++T + + + S L + +K F++R +V +K L
Sbjct: 291 TSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIKPYFLRRTKADVQQKKL 347
Score = 51 (23.0 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 22/90 (24%), Positives = 43/90 (47%)
Query: 1257 AHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKEN 1316
A+GT+ +++ V +EG + + +S+ H EF ++E P + S E
Sbjct: 1229 ANGTLADEL----VEEEG---EYREGKNTSDKVSESNETHSEEFAEEEKPSGDKSESYEI 1281
Query: 1317 GQGSSQNTNCALKHKLPLSHEGCSDKLMES 1346
+ S +T+ + + ++ H G S K+ ES
Sbjct: 1282 SEASETHTDNS-EEEIIGDHTG-SYKISES 1309
Score = 42 (19.8 bits), Expect = 7.9e-23, Sum P(2) = 7.9e-23
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 100 LEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDG 135
LE + E+ V+ ++ E+A+ +++ S H L + G
Sbjct: 441 LERGSDSEL-VHSDESESAVSQIDNISDHTLIEESG 475
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 314 (115.6 bits), Expect = 3.3e-47, Sum P(3) = 3.3e-47
Identities = 123/408 (30%), Positives = 183/408 (44%)
Query: 756 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLR 815
ILA MGLGKT QVIAFL ++ L LIV P + L NW+ E +W P EL
Sbjct: 311 ILADEMGLGKTIQVIAFL-AYLKENGLSQAAHLIVVPSSTLDNWEAEISRWCP-EL---- 364
Query: 816 VFMLEDVSRDRRAELLAKWRAKGGV--FLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
V S+D R + ++ AK G F + T + + G ++R M R +C
Sbjct: 365 VVEKYHGSQDERRRMRGRF-AKDGFTGFDVLLTTYHIV--GSTPEERKMFR-VCKL---- 416
Query: 874 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGS 933
D ++ DEAHM+KN L + + RI LTG+PLQNNL+E ++ FV F
Sbjct: 417 -DYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQNNLLELISLLCFVMPKFFAK 475
Query: 934 SHE-FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 992
S E ++ F ++ + S+ + QR+ + +K FV R V K+LP K
Sbjct: 476 SIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRI---MKPFVLRRLKKDVLKNLPKKL 532
Query: 993 VFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ-LT 1051
V V +S Q+ Y +D + V + R A + +I NHP +++
Sbjct: 533 SLVEKVPMSSQQKIYYHELVDYYSNNKGEVCSSSERAGI-AIMMEMRRIANHPLLMRHYF 591
Query: 1052 KD---KGYPSRXXXXXXXXXXNMDYNVVIGEKPRNMNDF--LQGKNDDGFFQKDWWNDLL 1106
D +G+ R N Y I E+ M+DF Q N F+ ++L+
Sbjct: 592 TDANLRGFSKRLANASSFKKTNEQY---IFEELAVMSDFQVYQMMNKHEFYDVKIPDNLI 648
Query: 1107 HEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 1154
+ SGK + L +L G + L+FSQ LD++E YL
Sbjct: 649 CD--------SGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYL 688
Score = 196 (74.1 bits), Expect = 3.3e-47, Sum P(3) = 3.3e-47
Identities = 61/172 (35%), Positives = 88/172 (51%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK + L +L G + L+FSQ LD++E YL ++ K G + RL
Sbjct: 651 SGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYL----------RIRKFG--FCRL 698
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T + RQ L+ FN + + L+ST+AG +GINL +A+ +I D +NP D Q
Sbjct: 699 DGATAVNVRQDLITDFNG--DDSIFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQ 756
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQ--QVH 1286
A R R GQ +PV YRL++ T+EE I K L + + +VH
Sbjct: 757 AEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSNEKGEVH 808
Score = 125 (49.1 bits), Expect = 3.3e-47, Sum P(3) = 3.3e-47
Identities = 59/187 (31%), Positives = 88/187 (47%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQ-FSSKSKL---MNSVTLDGDLSAGASIEVL 694
+++A L E K EK+ L + V+ FS S L + S+ + GDL A E++
Sbjct: 191 MNEASLIELQSVKTLSEKKA---LAIIDVRPFSDWSDLRQKLESIRMSGDLLNYAQ-ELI 246
Query: 695 GD-----AITGYIVNVVR--EK----GEEAVRIPSSISAKLKA--HQVVGIRFMWENIIQ 741
AI N+V EK G V P +S+ L+ +Q++G+ W ++
Sbjct: 247 NKQNTVAAILSKCNNMVSRLEKAISNGAGIVEQPKLLSSGLQLADYQIIGLN--WLTVMH 304
Query: 742 SIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 801
++ +G ILA MGLGKT QVIAFL ++ L LIV P + L NW+
Sbjct: 305 --KQEMNG------ILADEMGLGKTIQVIAFL-AYLKENGLSQAAHLIVVPSSTLDNWEA 355
Query: 802 EFMKWRP 808
E +W P
Sbjct: 356 EISRWCP 362
Score = 42 (19.8 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 198 KLLEEGASGFLQKKIANDGSENGGKEVSDINWNSV 232
K + GA Q K+ + G + ++ +NW +V
Sbjct: 268 KAISNGAGIVEQPKLLSSGLQLADYQIIGLNWLTV 302
Score = 39 (18.8 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 187 QTERPVRRRHGKLLEEGASGF 207
Q ER RR G+ ++G +GF
Sbjct: 373 QDER--RRMRGRFAKDGFTGF 391
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 295 (108.9 bits), Expect = 4.0e-47, Sum P(2) = 4.0e-47
Identities = 93/321 (28%), Positives = 152/321 (47%)
Query: 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 770
E+ IP +I+ L+ +Q G +F++ + I+ G GCIL MGLGKT QVI
Sbjct: 109 EDGDSIPYTINRYLRDYQREGAQFLYRHYIE----------GRGCILGDDMGLGKTIQVI 158
Query: 771 AFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAEL 830
+FL + G R + N + + + MK +P ++ +S +
Sbjct: 159 SFLAAVLHKK--GTREDI----ENNMPEFLLKSMKKKPPSTAKKMFLIVAPLS------V 206
Query: 831 LAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAR---EICH-ALQDGPDILVC------- 879
L W+ + + GY FR KD + R C AL + +C
Sbjct: 207 LYNWKDELDTW--GY--FRVTVLHGSKKDNELLRLKQRKCEIALTTYETLRLCLEELNSL 262
Query: 880 -------DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 932
DEAH IKN +A T+ +K VKC+ RI LTG+ LQNN+ E +C++D+ G LG
Sbjct: 263 EWSAIIVDEAHRIKNPKARVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLG 322
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 992
S F+ +F +P+E+GQ +T ++ + H L +++ G+ R ++K LP K
Sbjct: 323 SRIHFKKQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLIKGQLPKKE 382
Query: 993 VFVITVKLSPLQRRLYKRFLD 1013
++ L+ Q+ +Y+ L+
Sbjct: 383 DRMVYCSLTDFQKAVYQTVLE 403
Score = 288 (106.4 bits), Expect = 4.0e-47, Sum P(2) = 4.0e-47
Identities = 73/178 (41%), Positives = 99/178 (55%)
Query: 1110 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1169
T + YSGKM +L +L DK L+FS S LD+++ Y
Sbjct: 498 TLSDPKYSGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMA------------S 545
Query: 1170 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1229
G D+ RLDG T+S ER K+V+ FN ++ V L+ST AG LG+N AN VI+ D +W
Sbjct: 546 GLDYRRLDGSTKSEERLKIVKEFNS--SQDVNICLVSTMAGGLGLNFVGANVVILFDPTW 603
Query: 1230 NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR 1287
NP DLQA+ RA+R GQ + V RL++ GT+EE +Y RQV K+ L VV + R
Sbjct: 604 NPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKR 661
>ASPGD|ASPL0000044476 [details] [associations]
symbol:AN2255 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001660 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50105 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001307 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000037 RefSeq:XP_659859.1
ProteinModelPortal:Q5BB25 EnsemblFungi:CADANIAT00008947
GeneID:2874753 KEGG:ani:AN2255.2 HOGENOM:HOG000172620 OMA:ADEAHKM
OrthoDB:EOG4S7NZ2 Uniprot:Q5BB25
Length = 1832
Score = 458 (166.3 bits), Expect = 4.8e-47, Sum P(3) = 4.8e-47
Identities = 129/420 (30%), Positives = 206/420 (49%)
Query: 785 RTALIVTPVNVLHNWKQEFMKWRPSE-LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLI 843
RT L++ P +++ NW+ EF+ W P + L +R ED R AE+ + W KGGV LI
Sbjct: 1013 RT-LVICPSSLIENWRDEFVMWTPQDVLLTVRQVSSEDNMDVRLAEV-SMWYEKGGVLLI 1070
Query: 844 GYTAFRN--LSFGKHVKDRNMA----REICHALQDGPDILVCDEAHMIKNTRADTTQALK 897
+ FRN L+ K ++ +++ H L +GP I++ DEAH +KN + T+QA
Sbjct: 1071 SFDIFRNWVLNQATAKKSPPLSDSKHQDLKHWLLEGPSIIIADEAHKMKNPDSATSQAAM 1130
Query: 898 QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 957
Q + + RIALTGSPL NNL +YY MV+++ +LGS EF+ + PI+ G + +ST +
Sbjct: 1131 QFRSKSRIALTGSPLANNLGDYYTMVNWISYDYLGSFLEFKANYIEPIKEGLYADSTYGE 1190
Query: 958 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGF 1017
+ + +L + L+ + R D+ ++ DLPPK FV+TV L+ +Q+ Y + F
Sbjct: 1191 KRKSLMKLQVLKQILEPKINRADITALEGDLPPKVEFVLTVPLTKIQKEAYDMYA---AF 1247
Query: 1018 TNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRXXXXXXXXXXNMDYNVVI 1077
+E + ++ L NHP Q DK +V
Sbjct: 1248 ILQGRMDEVTQTQLWSWLSILGLCCNHPACFQ---DKLVSQAQGSSKKTNDTRKTSDVDQ 1304
Query: 1078 GEKPRNMND-FLQGKNDDGFFQ--KDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMG 1134
P + D F++ + + + H K ++ S + V+ I+ G
Sbjct: 1305 AISPDRLGDGFIENAGIRNLEELVAEQLRIFANVHDLKAVELSVRAVITKRIIDESIRAG 1364
Query: 1135 DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1194
DK LVFSQS+ TLD YL +L L + + RLDG+T ++ RQ ++FN+
Sbjct: 1365 DKVLVFSQSLHTLD----YLERL--------LKVTNRQYSRLDGQTPAATRQAATKKFNQ 1412
Score = 312 (114.9 bits), Expect = 2.7e-31, Sum P(3) = 2.7e-31
Identities = 80/190 (42%), Positives = 114/190 (60%)
Query: 1109 HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1168
H K ++ S + V+ I+ GDK LVFSQS+ TLD YL +L L
Sbjct: 1339 HDLKAVELSVRAVITKRIIDESIRAGDKVLVFSQSLHTLD----YLERL--------LKV 1386
Query: 1169 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1228
+ + RLDG+T ++ RQ ++FN+ K+V LISTRAG LG+N+ ANRVII D S
Sbjct: 1387 TNRQYSRLDGQTPAATRQAATKKFNQG-EKQVY--LISTRAGGLGLNITGANRVIIFDFS 1443
Query: 1229 WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT 1288
++P ++ QAI RA+R GQ KPVF YR +A GT +E I+++ K LA RVVD++ R+
Sbjct: 1444 FSPIWEEQAIGRAYRLGQQKPVFVYRFIAGGTFQEIIHEKATYKTQLAVRVVDKRNPIRS 1503
Query: 1289 ISKEEMLHLF 1298
K+ ++F
Sbjct: 1504 AHKKPGDYIF 1513
Score = 145 (56.1 bits), Expect = 4.8e-47, Sum P(3) = 4.8e-47
Identities = 42/133 (31%), Positives = 68/133 (51%)
Query: 649 KRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVRE 708
+RK A+++ + +L Q + + L+ L S+ V D+ + + V+
Sbjct: 871 RRKRAVQESQSAKLHQASAQQRMRWQEKQRKRLEKRLQ---SMGVSNDSPSRHAVSFK-- 925
Query: 709 KGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQ 768
E V + I ++K HQ+ GI+FMW +++ KS + GC+LAHTMGLGKT Q
Sbjct: 926 --EPIVYLHPHIGQRVKLHQLSGIQFMWRELVED----KSQE---GCLLAHTMGLGKTMQ 976
Query: 769 VIAFLYTAMRSVN 781
VI+ L T + N
Sbjct: 977 VISLLVTITAAAN 989
Score = 40 (19.1 bits), Expect = 4.8e-47, Sum P(3) = 4.8e-47
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 348 VDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLS 406
VD T ++ + L ++ SLS TDD + + + + V ESS RSLS
Sbjct: 573 VDDTGAPGIIQGQFLENSPASLSPSGTDDAIISVSGKRRSTRGQVPRVFESS--SRSLS 629
Score = 38 (18.4 bits), Expect = 7.7e-47, Sum P(3) = 7.7e-47
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 100 LEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEA 159
L A D + K +AAL++LE + +G G E + Y + N++ C +A
Sbjct: 803 LHCARHDLQGIKKRSVQAALEKLE-------DNKNG-GFE--TYYSELINRLE---CWQA 849
Query: 160 WKR 162
W+R
Sbjct: 850 WQR 852
Score = 38 (18.4 bits), Expect = 3.0e-20, Sum P(3) = 3.0e-20
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 457 DECSTKLEDHSVSPENINDAATDNS 481
D T D ++SP+ + D +N+
Sbjct: 1295 DTRKTSDVDQAISPDRLGDGFIENA 1319
>UNIPROTKB|E1BFL2 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:DAAA02062232 EMBL:DAAA02062233 EMBL:DAAA02062234
EMBL:DAAA02062235 IPI:IPI00733931 Ensembl:ENSBTAT00000046144
Uniprot:E1BFL2
Length = 1482
Score = 326 (119.8 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 82/217 (37%), Positives = 114/217 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKM+++ +L + G + L+FSQS LD++E +L R K L ++
Sbjct: 829 SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFL----RAQKYSYL--------KM 876
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T + RQ L+ R+NE + + L++TR G LG+NL ANRVII D WNP+ D Q
Sbjct: 877 DGTTAIASRQPLITRYNEDTS--IFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQ 934
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLH 1296
A RAWR GQ K V YRL+ GT+EEKIY RQ+ K+ L RV+ + R ++
Sbjct: 935 ARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYE 994
Query: 1297 LFEFGDDENPDPLTAVSKENGQGSS-QNTNCALKHKL 1332
LF + + G GS Q LK +L
Sbjct: 995 LFTLSSPDTSQSTETSAIFAGTGSDVQTPKRHLKRRL 1031
Score = 279 (103.3 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 82/269 (30%), Positives = 138/269 (51%)
Query: 783 GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDV-SRDRRAELLAKWRAK-GGV 840
GL +IV P V+H W +EF W P+ RV +L + S + E L + A+ G+
Sbjct: 556 GLGPTIIVCPTTVMHQWVKEFHTWWPA----FRVAVLHETGSFTHKKEKLVRDIARCHGI 611
Query: 841 FLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVK 900
+ Y+ R + +D +++R H ++ DE H I+N A T A KQ +
Sbjct: 612 LITSYSYIRLM------QD-DISRHDWH-------YVILDEGHKIRNPNAAVTLACKQFR 657
Query: 901 CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKI 960
RI L+GSP+QNNL E + + DF+ G LG+ F +F PI G ++N++ VK
Sbjct: 658 TPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKT 717
Query: 961 MNQRSHILYEQLKGFV-QRMDMNV-VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFT 1018
+ + +L + + ++ +RM +V + LP K V+ +L+ Q ++Y+ F+D
Sbjct: 718 AYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVY 777
Query: 1019 NDRVSNEKIRKSFFAGYQALAQIWNHPGI 1047
R+ N +++ F+G AL +I NHP +
Sbjct: 778 --RILNGEMQ--IFSGLVALRKICNHPDL 802
Score = 45 (20.9 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 18/75 (24%), Positives = 30/75 (40%)
Query: 98 DDLEAAVEDEM--TVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGC 155
D LE V ++ +++ A L E E E +L+ L L + ++IE P
Sbjct: 103 DVLEQGVLQQVDSAIHEASCVAQLAEAEKEYRSVLDDLTSCTTSLRQIDKIIEQLGPQAA 162
Query: 156 CTEAWKRRAHWVGSQ 170
+ R+ V Q
Sbjct: 163 TNKDINRKLDSVKRQ 177
Score = 44 (20.5 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 1281 DRQQVHRT--ISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEG 1338
D +V RT +S EE + E D+ V +E + Q N KHK + H
Sbjct: 1122 DSPRVSRTCGVSGEESVSEKESLSDKRES--CQVQREALWENEQTENNFYKHKSKMKHHV 1179
Query: 1339 CSDKLMESLLGKHHPR 1354
+ + + L P+
Sbjct: 1180 AEEPMEKHLRPNQKPK 1195
Score = 39 (18.8 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 299 EKELALSEEQRKKFRKVKEEDD 320
E+ L L+ +R+K V+E DD
Sbjct: 399 EQRLVLNRRKRQKKVTVQEIDD 420
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 296 (109.3 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 78/194 (40%), Positives = 105/194 (54%)
Query: 1110 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1169
T + YSGKM +L +L C DK L+FS S LD+++ Y
Sbjct: 511 TLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMA------------S 558
Query: 1170 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1229
G D+ RLDG T+S ER K+V+ FN + + C L+ST AG LG+N AN V++ D +W
Sbjct: 559 GLDYRRLDGSTKSEERLKIVKEFNSTQDVNI-C-LVSTMAGGLGLNFVGANVVVLFDPTW 616
Query: 1230 NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTI 1289
NP DLQAI RA+R GQ + V RL++ GT+EE +Y RQ+ K+ L VV + R
Sbjct: 617 NPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYF 676
Query: 1290 -----SKEEMLHLF 1298
SKE LF
Sbjct: 677 EAVQGSKEHQGELF 690
Score = 282 (104.3 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 93/321 (28%), Positives = 150/321 (46%)
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
IP +I+ L+ +Q G RF++ + I G GCIL MGLGKT QVI+FL
Sbjct: 126 IPYTINRYLRDYQREGTRFLYGHYIH----------GGGCILGDDMGLGKTVQVISFLAA 175
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 835
+ G R + N + + MK P ++F++ V+ +L W+
Sbjct: 176 VLHKK--GTREDI----ENNMPEFLLRSMKKEPLSSTAKKMFLI--VAP---LSVLYNWK 224
Query: 836 AKGGVFLIGYTAFRNLSFGKHVKDRNMAR---EICH-ALQDGPDILVC------------ 879
+ + GY FR + KD + R C AL + +C
Sbjct: 225 DELDTW--GY--FRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAV 280
Query: 880 --DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 937
DEAH IKN +A T+ +K +KC RI LTG+ LQNN+ E +C++D+ G LGS F
Sbjct: 281 IVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYF 340
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 997
+ +F +P+E+GQ +T ++ + L +++ G+ R ++K LP K ++
Sbjct: 341 KKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVY 400
Query: 998 VKLSPLQRRLYKRFLDLHGFT 1018
L+ Q+ +Y+ L+ T
Sbjct: 401 CSLTDFQKAVYQTVLETEDVT 421
Score = 42 (19.8 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 1243 RYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEML 1295
R GQ + Y+ +HG + +Y +T A V Q T ++E L
Sbjct: 433 RSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQETL 485
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 319 (117.4 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 79/216 (36%), Positives = 115/216 (53%)
Query: 1104 DLLH-EHTYKELDY-----SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKL 1157
DLL EH+++ DY SGKM ++ ++L + G + L+FSQ+ LD++E +L
Sbjct: 707 DLLEREHSHQNPDYGNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVA- 765
Query: 1158 PRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLH 1217
+ R+DG T +R L++ FN + V +++T+ G LG NL
Sbjct: 766 -----------NEYSYRRMDGLTPVKQRMALIDEFNNSEDMFV--FVLTTKVGGLGTNLT 812
Query: 1218 SANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAA 1277
ANRVII D WNP+ D+QA RAWR GQ K V YRL+ GT+EEK+Y RQ+ K L
Sbjct: 813 GANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTN 872
Query: 1278 RVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS 1313
+++ Q R +M LF DD + + T S
Sbjct: 873 KILKNPQQRRFFKARDMKDLFILKDDGDSNASTETS 908
Score = 258 (95.9 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 101/359 (28%), Positives = 158/359 (44%)
Query: 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 770
E + IP I KL +Q VG++++WE Q G I+ MGLGKT QV+
Sbjct: 372 EGGLNIPECIFRKLFDYQRVGVQWLWELHCQRA----------GGIIGDEMGLGKTIQVL 421
Query: 771 AFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDR---R 827
+FL + S + ++I+ PV +L W++E KW P V +L D ++D +
Sbjct: 422 SFLGSLHFSKMY--KPSIIICPVTLLRQWRREAQKWYPD----FHVEILHDSAQDSGHGK 475
Query: 828 AELLAK---WRAKGGVFLIGYTAFRNLSFGKHVKDRNMARE----ICHALQ---DGPDIL 877
+ A + ++ V +N + +R + E I Q G +L
Sbjct: 476 GQGKASESDYDSESSVDSDHEPKSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQGEKLL 535
Query: 878 -------VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 930
V DE H I+N +D T KQ++ RI +TG+P+QN L E + + DFV G
Sbjct: 536 NIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGK 595
Query: 931 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 990
LG F F PI G + N++ V + + +L + + ++ R V L
Sbjct: 596 LGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTK 655
Query: 991 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 1049
KT V+ L+ QR Y+ FL N R S + G + +I NHP +L+
Sbjct: 656 KTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGN---RNSLY-GIDVMRKICNHPDLLE 710
Score = 56 (24.8 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 355 SAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQN-LETGVLESSVKERSL 405
S VE + A K L KK D+ D+ G ++ ALQ+ L T L S +K+R +
Sbjct: 79 STVENVDEIAAEKGL--KKDDESDLQGLHSGSALQHALATDRLRS-LKKRKI 127
>SGD|S000000277 [details] [associations]
symbol:RDH54 "DNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000727 "double-strand break repair via
break-induced replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0030491 "heteroduplex formation" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0045144 "meiotic sister chromatid segregation" evidence=IMP]
[GO:0015616 "DNA translocase activity" evidence=IDA] [GO:0032392
"DNA geometric change" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000000277 GO:GO:0005524
GO:GO:0005634 EMBL:BK006936 GO:GO:0004386 EMBL:X76294
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0007131 GO:GO:0045144 InterPro:IPR018838 Pfam:PF10382
GO:GO:0000727 KO:K10877 GO:GO:0015616 GO:GO:0032392
HOGENOM:HOG000204521 GO:GO:0030491 OrthoDB:EOG4CVKG1 EMBL:Z35942
PIR:S45466 RefSeq:NP_009629.6 RefSeq:NP_009633.3
ProteinModelPortal:P38086 SMR:P38086 DIP:DIP-792N IntAct:P38086
MINT:MINT-566887 STRING:P38086 PaxDb:P38086 PeptideAtlas:P38086
EnsemblFungi:YBR073W GeneID:852365 GeneID:852369 KEGG:sce:YBR073W
KEGG:sce:YBR077C CYGD:YBR073w GeneTree:ENSGT00700000105778
OMA:AMSRIHR NextBio:971140 Genevestigator:P38086 GermOnline:YBR073W
GO:GO:0003916 Uniprot:P38086
Length = 958
Score = 308 (113.5 bits), Expect = 6.3e-46, Sum P(3) = 6.3e-46
Identities = 96/315 (30%), Positives = 155/315 (49%)
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNL--------------GL-RTALIVTPVNVLHN 798
GC+LA MGLGKT I ++T +R GL + L+V PV ++ N
Sbjct: 341 GCLLADDMGLGKTLMSITLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGN 400
Query: 799 WKQEFMKW-RPSELKPLRVFMLEDVSRDRRA-ELLAKWRAKGGVFLIGYTAFRNLSFGKH 856
WK+EF KW S + L + D+ A K + V +IGY LS +
Sbjct: 401 WKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQRTYQVLIIGYEKL--LSVSEE 458
Query: 857 VKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 916
+ ++N H + D+LVCDE H +KN + LK + +R++ LTG+P+QN+L
Sbjct: 459 L-EKNK-----HLI----DMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDL 508
Query: 917 MEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT-NSTSEDV-KIMNQRSHILYEQLKG 974
E++ ++DF+ G LGS F+ RF PI + T N +E++ + +RS + E K
Sbjct: 509 NEFFTIIDFINPGILGSFASFKRRFIIPITRARDTANRYNEELLEKGEERSKEMIEITKR 568
Query: 975 FVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAG 1034
F+ R +++K LPPKT ++ K P +++ F D+ R+ ++ S G
Sbjct: 569 FILRRTNAILEKYLPPKTDIILFCK--PYSQQILA-FKDI--LQGARLDFGQLTFSSSLG 623
Query: 1035 Y-QALAQIWNHPGIL 1048
L ++ N PG++
Sbjct: 624 LITLLKKVCNSPGLV 638
Score = 243 (90.6 bits), Expect = 6.3e-46, Sum P(3) = 6.3e-46
Identities = 64/208 (30%), Positives = 107/208 (51%)
Query: 1097 FQKDWWNDLLHEHTYKELDYSGKMVLLLDILT-MCSNMGDKSLVFSQSIPTLDLIEFYLS 1155
+ K D + +Y SGK+ +L+ +L + +K +V S TLD+IE ++
Sbjct: 643 YYKSHIKDTQSQDSYSRSLNSGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMN 702
Query: 1156 KLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGIN 1215
G RLDG + +R +V FN N + L+S ++G +G+N
Sbjct: 703 MA------------GMSHCRLDGSIPAKQRDSIVTSFNR--NPAIFGFLLSAKSGGVGLN 748
Query: 1216 LHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGL 1275
L A+R+I+ D WNP+ DLQA+ R R GQ KP F YRL+ G ++EKI +RQ+ K L
Sbjct: 749 LVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSL 808
Query: 1276 AARVV-DRQQVHRTISKEEMLHLFEFGD 1302
+ + + D + ++ S +++ + + D
Sbjct: 809 SQKFLGDSEMRNKESSNDDLFNKEDLKD 836
Score = 75 (31.5 bits), Expect = 6.3e-46, Sum P(3) = 6.3e-46
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 724 LKAHQVVGIRFMWENIIQSIRK-VKSGD-----KGL---------GCILAHTMGLGKTFQ 768
L+ HQ G++FM++ ++ R +++ D K L GC+LA MGLGKT
Sbjct: 296 LRPHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLM 355
Query: 769 VIAFLYTAMR 778
I ++T +R
Sbjct: 356 SITLIWTLIR 365
Score = 38 (18.4 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 1089 QGKNDDGFFQKDWWNDLLHEHT 1110
+ NDD F K+ DL HT
Sbjct: 822 ESSNDD-LFNKEDLKDLFSVHT 842
>UNIPROTKB|E2RGN3 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001890 Uniprot:E2RGN3
Length = 925
Score = 294 (108.6 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 73/178 (41%), Positives = 101/178 (56%)
Query: 1110 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1169
T + YSGKM +L +L C DK L+FS S LD+++ Y
Sbjct: 438 TLSDPKYSGKMKVLQQLLNHCRKNKDKILLFSFSTKLLDVLQQYCMAA------------ 485
Query: 1170 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1229
G D+ RLDG T+S ER K+V+ FN + + C L+ST AG +G+N AN V++ D +W
Sbjct: 486 GFDYRRLDGSTKSEERIKIVKEFNSTQDVNI-C-LVSTMAGGVGLNFVGANVVVLFDPTW 543
Query: 1230 NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR 1287
NP DLQAI RA+R GQ + V +RL++ GT+EE +Y RQV K+ L VV + R
Sbjct: 544 NPANDLQAIDRAYRIGQCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKR 601
Score = 291 (107.5 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 94/321 (29%), Positives = 150/321 (46%)
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
IP +I+ L+ +Q G +F++ + IQ G GCIL MGLGKT QVI+FL
Sbjct: 53 IPYTINRYLRDYQREGAQFLYAHFIQ----------GKGCILGDDMGLGKTVQVISFLAA 102
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 835
+ G R + N + + MK P ++F++ V+ +L WR
Sbjct: 103 VLHKK--GTREDI----ENNMPEFLLRSMKKEPPSSTAKKMFLI--VAP---LSVLYNWR 151
Query: 836 AKGGVFLIGYTAFRNLSFGKHVKDRNMAR---EICH-ALQDGPDILVC------------ 879
+ + GY FR + KD + R C AL + +C
Sbjct: 152 DELDTW--GY--FRVTILHGNKKDNELVRVKQRKCEIALTTYETLRLCLDELNSLEWSAV 207
Query: 880 --DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 937
DEAH IKN +A T+ +K +KC RI LTG+ LQNN+ E +C++D+ G LGS F
Sbjct: 208 IVDEAHKIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHF 267
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 997
+ +F +P+E+GQ +T ++ + L + + G+ R ++K LP K ++
Sbjct: 268 KKQFSDPVEHGQRHTATKRELATGRKAMQRLAKMMSGWFLRRTKTLIKDQLPKKEDRMVY 327
Query: 998 VKLSPLQRRLYKRFLDLHGFT 1018
L+ Q+ +Y+ L+ T
Sbjct: 328 CSLTDFQKAVYQTVLETKDVT 348
Score = 38 (18.4 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 1025 EKIRKSFFAGYQALAQIWNHPGILQ 1049
E ++ +F+ L ++ NH +LQ
Sbjct: 377 ETVKTLYFSYLAVLQKVANHVALLQ 401
>UNIPROTKB|F1PQX1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001906 OMA:QSSQPCT
Uniprot:F1PQX1
Length = 995
Score = 294 (108.6 bits), Expect = 1.9e-45, Sum P(3) = 1.9e-45
Identities = 73/178 (41%), Positives = 101/178 (56%)
Query: 1110 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1169
T + YSGKM +L +L C DK L+FS S LD+++ Y
Sbjct: 500 TLSDPKYSGKMKVLQQLLNHCRKNKDKILLFSFSTKLLDVLQQYCMAA------------ 547
Query: 1170 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1229
G D+ RLDG T+S ER K+V+ FN + + C L+ST AG +G+N AN V++ D +W
Sbjct: 548 GFDYRRLDGSTKSEERIKIVKEFNSTQDVNI-C-LVSTMAGGVGLNFVGANVVVLFDPTW 605
Query: 1230 NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR 1287
NP DLQAI RA+R GQ + V +RL++ GT+EE +Y RQV K+ L VV + R
Sbjct: 606 NPANDLQAIDRAYRIGQCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKR 663
Score = 291 (107.5 bits), Expect = 1.9e-45, Sum P(3) = 1.9e-45
Identities = 94/321 (29%), Positives = 150/321 (46%)
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
IP +I+ L+ +Q G +F++ + IQ G GCIL MGLGKT QVI+FL
Sbjct: 115 IPYTINRYLRDYQREGAQFLYAHFIQ----------GKGCILGDDMGLGKTVQVISFLAA 164
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 835
+ G R + N + + MK P ++F++ V+ +L WR
Sbjct: 165 VLHKK--GTREDI----ENNMPEFLLRSMKKEPPSSTAKKMFLI--VAP---LSVLYNWR 213
Query: 836 AKGGVFLIGYTAFRNLSFGKHVKDRNMAR---EICH-ALQDGPDILVC------------ 879
+ + GY FR + KD + R C AL + +C
Sbjct: 214 DELDTW--GY--FRVTILHGNKKDNELVRVKQRKCEIALTTYETLRLCLDELNSLEWSAV 269
Query: 880 --DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 937
DEAH IKN +A T+ +K +KC RI LTG+ LQNN+ E +C++D+ G LGS F
Sbjct: 270 IVDEAHKIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHF 329
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 997
+ +F +P+E+GQ +T ++ + L + + G+ R ++K LP K ++
Sbjct: 330 KKQFSDPVEHGQRHTATKRELATGRKAMQRLAKMMSGWFLRRTKTLIKDQLPKKEDRMVY 389
Query: 998 VKLSPLQRRLYKRFLDLHGFT 1018
L+ Q+ +Y+ L+ T
Sbjct: 390 CSLTDFQKAVYQTVLETKDVT 410
Score = 38 (18.4 bits), Expect = 1.9e-45, Sum P(3) = 1.9e-45
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 1025 EKIRKSFFAGYQALAQIWNHPGILQ 1049
E ++ +F+ L ++ NH +LQ
Sbjct: 439 ETVKTLYFSYLAVLQKVANHVALLQ 463
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 301 (111.0 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 74/194 (38%), Positives = 111/194 (57%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
++ SGKM L+D+L + G ++LVFSQS L+++E L + K+
Sbjct: 436 MEESGKMTFLMDLLKRLRDEGHQTLVFSQSRQILNILERLLKN-----RHFKI------- 483
Query: 1174 YRLDGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1232
R+DG T ER+K + F + NK L++T+ G +G+ L +A+RV+I D SWNP
Sbjct: 484 LRIDGTITHLVEREKRISLFQQ--NKDYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPA 541
Query: 1233 YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVV-DRQQVHRTISK 1291
D QA+ R +R GQ + V YRL+ GT+EEKIY+RQV K+ L + D++ R SK
Sbjct: 542 TDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSK 601
Query: 1292 EEMLHLFEFGDDEN 1305
+E+ LF D +N
Sbjct: 602 QELRELFTIEDFQN 615
Score = 270 (100.1 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 74/235 (31%), Positives = 119/235 (50%)
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 813
G ILA MGLGKT Q+IAFL + M +L + L++ P +++ W +EF+KW P
Sbjct: 95 GGILADDMGLGKTVQIIAFL-SGMFDASL-VNHVLLIMPTSLISTWLREFVKWTPG---- 148
Query: 814 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
+RV S+D R L++ + + GV + Y N + + N RE
Sbjct: 149 MRVKTFHGPSKDERTRNLSRIQQRNGVIITTYQMLINN--WQQLSSLN-GREFVW----- 200
Query: 874 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 932
D ++ DEAH IK + + + + + RI LTG+P+QNNL E + + DF +G LG
Sbjct: 201 -DYVILDEAHKIKTSSTKSAICARAIPARNRILLTGTPIQNNLQELWSLFDFACQGSLLG 259
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKK 986
+ F+ ++NPI + ++T + + + S L +K F++R V KK
Sbjct: 260 TLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEEVQKK 314
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 301 (111.0 bits), Expect = 5.8e-45, Sum P(3) = 5.8e-45
Identities = 74/188 (39%), Positives = 110/188 (58%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKM+ L+ +L + G ++LVFSQS L++IE L + K +K R+
Sbjct: 461 SGKMIFLMALLERLQDEGHQTLVFSQSRQILNIIERLL--------KNKHFKT----LRI 508
Query: 1177 DGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1235
DG T ER+K ++ F + NK L++T+ G +G+ L +A+RV+I D SWNP D
Sbjct: 509 DGTVTHLWEREKRIQLFQQ--NKEYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDA 566
Query: 1236 QAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVV-DRQQVHRTISKEEM 1294
QA+ R +R GQ + V YRL+ GT+EEKIY+RQV K+ L + D++ R +K+E+
Sbjct: 567 QAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFTKQEL 626
Query: 1295 LHLFEFGD 1302
LF GD
Sbjct: 627 KELFTVGD 634
Score = 263 (97.6 bits), Expect = 5.8e-45, Sum P(3) = 5.8e-45
Identities = 73/240 (30%), Positives = 122/240 (50%)
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 813
G ILA MGLGKT Q+IAFL + M +L + L++ P N+++ W +EF KW P
Sbjct: 117 GGILADDMGLGKTVQIIAFL-SGMFDASL-VNHVLLIMPTNLINTWVKEFAKWTPG---- 170
Query: 814 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
+RV S++ R L + + + GV + Y L+ + + N +
Sbjct: 171 MRVKTFHGSSKNERIRNLTRIQQRNGVVITTYQML--LNNWQQLASFNGQAFVW------ 222
Query: 874 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 932
D ++ DEAH IK+ + + V R+ LTG+P+QNNL E + + DF +G LG
Sbjct: 223 -DYVILDEAHKIKSASTKSAVCARAVPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLG 281
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRM--DMNVVKKDLP 989
+ F+ ++NPI + ++T + + + S L E +K F++R ++++ K D P
Sbjct: 282 TLKTFKMEYENPIIRAREKDATPGEKALGFKMSENLMEIIKPYFLRRTKEEVHMKKADKP 341
Score = 58 (25.5 bits), Expect = 5.8e-45, Sum P(3) = 5.8e-45
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 988 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIR-KSFFAGYQALAQIWNHPG 1046
L K ++ ++L PLQ +Y++F+ L D + + +S A L ++ +HP
Sbjct: 361 LTRKNDLIVWIRLVPLQEEIYRKFVSL-----DHIKELLMETRSPLAELGVLKKLCDHPR 415
Query: 1047 IL 1048
+L
Sbjct: 416 LL 417
>UNIPROTKB|F5H493 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0007256 "activation of JNKK
activity" evidence=IEA] [GO:0007257 "activation of JUN kinase
activity" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0009636
"response to toxic substance" evidence=IEA] [GO:0010165 "response
to X-ray" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0003677 GO:GO:0009636 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
EMBL:AC073366 GO:GO:0006290 GO:GO:0007256 EMBL:AL138760
HGNC:HGNC:3438 ChiTaRS:ERCC6 GO:GO:0000303 IPI:IPI01012579
ProteinModelPortal:F5H493 SMR:F5H493 Ensembl:ENST00000542458
UCSC:uc009xod.3 ArrayExpress:F5H493 Bgee:F5H493 Uniprot:F5H493
Length = 863
Score = 334 (122.6 bits), Expect = 6.5e-45, Sum P(2) = 6.5e-45
Identities = 84/231 (36%), Positives = 120/231 (51%)
Query: 1103 NDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK 1162
+D L E + SGKM+++ +L + G + L+FSQS LD++E +L R K
Sbjct: 194 DDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFL----RAQK 249
Query: 1163 QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1222
L ++DG T + RQ L+ R+NE + + L++TR G LG+NL ANRV
Sbjct: 250 YTYL--------KMDGTTTIASRQPLITRYNEDTS--IFVFLLTTRVGGLGVNLTGANRV 299
Query: 1223 IIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282
+I D WNP+ D QA RAWR GQ K V YRL+ GT+EEKIY RQ+ K+ L RV+
Sbjct: 300 VIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKD 359
Query: 1283 QQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSS-QNTNCALKHKL 1332
+ R ++ LF + + G GS Q C LK ++
Sbjct: 360 PKQRRFFKSNDLYELFTLTSPDASQSTETSAIFAGTGSDVQTPKCHLKRRI 410
Score = 230 (86.0 bits), Expect = 6.5e-45, Sum P(2) = 6.5e-45
Identities = 57/173 (32%), Positives = 96/173 (55%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
++ DE H I+N A T A KQ + RI L+GSP+QNNL E + + DF+ G LG+
Sbjct: 13 VILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPV 72
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDMNV-VKKDLPPKTVF 994
F +F PI G ++N++ VK + + +L + + ++ +RM +V + LP K
Sbjct: 73 FMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQ 132
Query: 995 VITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 1047
V+ +L+ Q ++Y+ F+D R+ N +++ F+G AL +I NHP +
Sbjct: 133 VLFCRLTDEQHKVYQNFVDSKEVY--RILNGEMQ--IFSGLIALRKICNHPDL 181
Score = 43 (20.2 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 1306 PDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKL 1343
P+ L+ +S G G N++ K +P E +KL
Sbjct: 487 PEELSVIS---GNGECSNSSGTGKTSMPSGDESIDEKL 521
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 297 (109.6 bits), Expect = 7.6e-45, Sum P(2) = 7.6e-45
Identities = 75/208 (36%), Positives = 118/208 (56%)
Query: 1103 NDLLH-EHTYKE--LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPR 1159
+D+ H +H + ++ SGKM+ L+++L + G ++LVFSQS L++IE L
Sbjct: 466 SDVDHIDHVTDDTLMEESGKMIFLIELLRRLRDEGHQTLVFSQSRQILNIIERLLKN--- 522
Query: 1160 PGKQGKLWKKGKDWYRLDGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHS 1218
+ K+ R+DG T ER+K + F + NK L++T+ G +G+ L +
Sbjct: 523 --RHFKI-------LRVDGTVTHLVEREKRIHLFQQ--NKDYSVFLLTTQVGGVGLTLTA 571
Query: 1219 ANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAAR 1278
A RV+I D SWNP D QA+ R +R GQ + + YRL+ GT+EEKIY+RQV K+ L +
Sbjct: 572 ATRVVIFDPSWNPATDAQAVDRVYRIGQKENIVVYRLITCGTVEEKIYRRQVFKDSLIRQ 631
Query: 1279 VV-DRQQVHRTISKEEMLHLFEFGDDEN 1305
D++ R +K+E+ LF D +N
Sbjct: 632 TTGDKKNPFRYFTKQELRELFTIEDFQN 659
Score = 273 (101.2 bits), Expect = 7.6e-45, Sum P(2) = 7.6e-45
Identities = 76/242 (31%), Positives = 120/242 (49%)
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 813
G ILA MGLGKT Q+IAFL + M L + L++ P N++ W +EF+KW P
Sbjct: 139 GGILADDMGLGKTVQIIAFL-SGMFDATL-VSHVLLIMPTNLISTWIKEFVKWTPG---- 192
Query: 814 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
+RV S+D R L + + + GV + Y N + + N +E
Sbjct: 193 MRVKTFHGSSKDERTRNLNRIQQRNGVIITTYQMLINN--WQQLSSLN-GQEFVW----- 244
Query: 874 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 932
D ++ DEAH IK + + + V + RI LTG+P+QNNL E + + DF +G LG
Sbjct: 245 -DYVILDEAHKIKTSSTKSAICARAVPARNRILLTGTPIQNNLQELWSLFDFACQGSLLG 303
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKKDLPPK 991
+ F+ ++NPI + ++T + + + S L +K F++R V KK P+
Sbjct: 304 TLKTFKIEYENPIMRAREKDATPGEKALGLKISENLMAIIKSHFLRRTKEEVQKKSSTPE 363
Query: 992 TV 993
+
Sbjct: 364 EI 365
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 313 (115.2 bits), Expect = 8.1e-45, Sum P(3) = 8.1e-45
Identities = 77/189 (40%), Positives = 108/189 (57%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 535
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ER++ +E FN P + R ++STRAG LGINL SA+ VI+ D WNP DLQ
Sbjct: 536 DGQTPHEEREEAIEAFNVPNSSRF-IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQ 594
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR----QQVHRTISKE 1292
A+ RA R GQ KPV +RL+ T+EE+I +R K L + V+ + Q ++KE
Sbjct: 595 AMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKE 654
Query: 1293 EMLHLFEFG 1301
EML + G
Sbjct: 655 EMLQMIRHG 663
Score = 180 (68.4 bits), Expect = 8.1e-45, Sum P(3) = 8.1e-45
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 311 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 370
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 371 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 418
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 419 YLGLSKMQREWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 466
Score = 117 (46.2 bits), Expect = 8.1e-45, Sum P(3) = 8.1e-45
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 202 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 260
Query: 810 ELKPLRVFMLEDVSRDRRAELL 831
LRV +D RA +
Sbjct: 261 ----LRVICFVG-DKDARAAFI 277
>UNIPROTKB|G5E5P9 [details] [associations]
symbol:LOC789977 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:DAAA02024017
EMBL:DAAA02024018 EMBL:DAAA02024019 EMBL:DAAA02024020
EMBL:DAAA02024021 EMBL:DAAA02024022 Ensembl:ENSBTAT00000027486
Uniprot:G5E5P9
Length = 908
Score = 296 (109.3 bits), Expect = 1.8e-44, Sum P(4) = 1.8e-44
Identities = 79/194 (40%), Positives = 105/194 (54%)
Query: 1110 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1169
T + YSGKM +L +L C DK L+FS S LD+++ Y
Sbjct: 437 TLSDPKYSGKMKVLQQLLNHCRKNKDKVLLFSFSTKLLDVLQQYCMA------------S 484
Query: 1170 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1229
G D+ RLDG T+S ER K+V+ FN + + C L+ST AG LG+N AN V++ D +W
Sbjct: 485 GLDYRRLDGSTKSEERIKIVKEFNSTQDVNI-C-LVSTMAGGLGLNFVGANVVVLFDPTW 542
Query: 1230 NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTI 1289
NP DLQAI RA+R GQ + V RL++ GT+EE +Y RQV K+ L VV + R
Sbjct: 543 NPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYF 602
Query: 1290 -----SKEEMLHLF 1298
SKE LF
Sbjct: 603 EAVQGSKEHQGELF 616
Score = 282 (104.3 bits), Expect = 1.8e-44, Sum P(4) = 1.8e-44
Identities = 95/322 (29%), Positives = 154/322 (47%)
Query: 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 770
E IP +I+ L+ +Q G +F++ + IQ G GCIL MGLGKT QVI
Sbjct: 48 ENGDSIPYTINRYLRDYQREGAQFLYGHFIQ----------GRGCILGDDMGLGKTVQVI 97
Query: 771 AFLYTAMRSVNLGLRTALIVT-PVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAE 829
+FL + G R + P +L N K++ PS K ++F++ V+
Sbjct: 98 SFLAAVLGKK--GTREDIENNMPEFLLRNMKKD----PPSTAK--KMFLI--VAP---LS 144
Query: 830 LLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAR---EICH-ALQDGPDILVC------ 879
+L W+ + + GY FR + KD + R C AL + +C
Sbjct: 145 VLYNWKDELDTW--GY--FRVTILHGNKKDSELIRVKQRKCEIALTTYETLRLCLDELNS 200
Query: 880 --------DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFL 931
DEAH IKN +A T+ +K ++C RI LTG+ LQNN+ E +C++D+ G L
Sbjct: 201 LEWSAVIVDEAHRIKNPKARVTEIMKALRCNVRIGLTGTILQNNMKELWCVMDWAVPGLL 260
Query: 932 GSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPK 991
GS F+ +F +P+E+GQ +T ++ + L ++ G+ R ++K LP K
Sbjct: 261 GSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMQRLARKMSGWFLRRTKTLIKDQLPKK 320
Query: 992 TVFVITVKLSPLQRRLYKRFLD 1013
++ L+ Q+ +Y+ L+
Sbjct: 321 EDRMVYCSLTDFQKAVYQTVLE 342
Score = 40 (19.1 bits), Expect = 1.8e-44, Sum P(4) = 1.8e-44
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 298 NEKELALSEEQRKKFRKVKEEDD 320
NEK L EE+R ++++E++D
Sbjct: 7 NEK---LCEERRVPLKRLQEDED 26
Score = 39 (18.8 bits), Expect = 1.8e-44, Sum P(4) = 1.8e-44
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 1018 TNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 1049
TN + E ++ +F+ L ++ NH +LQ
Sbjct: 371 TNSQ--GETVKTLYFSYLAVLQKVANHVALLQ 400
>UNIPROTKB|F1S4L1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:CU855584
Ensembl:ENSSSCT00000011974 Uniprot:F1S4L1
Length = 928
Score = 292 (107.8 bits), Expect = 1.9e-44, Sum P(6) = 1.9e-44
Identities = 73/178 (41%), Positives = 100/178 (56%)
Query: 1110 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1169
T + YSGKM +L +L C DK L+FS S LD+++ Y
Sbjct: 434 TLSDPKYSGKMKVLQQLLNHCRKNKDKVLLFSFSTKLLDVLQQYCMA------------S 481
Query: 1170 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1229
G D+ RLDG T+S ER K+V+ FN + + C L+ST AG LG+N AN V++ D +W
Sbjct: 482 GLDYRRLDGSTKSEERIKIVKEFNSTQDVNI-C-LVSTMAGGLGLNFVGANVVVLFDPTW 539
Query: 1230 NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR 1287
NP DLQAI RA+R GQ + V RL++ GT+EE +Y RQ+ K+ L VV + R
Sbjct: 540 NPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQLYKQQLHCVVVGSENAKR 597
Score = 233 (87.1 bits), Expect = 1.9e-44, Sum P(6) = 1.9e-44
Identities = 46/137 (33%), Positives = 78/137 (56%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
++ DEAH IKN +A T+ +K +KC RI LTG+ LQNN+ E +C++D+ G LGS
Sbjct: 203 VIVDEAHRIKNPKARITEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSEIH 262
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F+ F +P+E+GQ +T ++ + L ++ G+ R ++K LP K ++
Sbjct: 263 FKKHFSDPVEHGQRHTATKRELATGRKAMQRLAIKMSGWFLRRTKILIKDQLPKKEDRMV 322
Query: 997 TVKLSPLQRRLYKRFLD 1013
L+ Q+ +Y+ L+
Sbjct: 323 YCSLTDFQKAVYQTVLE 339
Score = 101 (40.6 bits), Expect = 1.9e-44, Sum P(6) = 1.9e-44
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 705 VVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLG 764
V + E+ IP +I+ L+ +Q G +F++ + IQ G GCIL MGLG
Sbjct: 42 VAFQLSEDGASIPYTINRYLRDYQREGAQFLYGHFIQ----------GRGCILGDDMGLG 91
Query: 765 KTFQVIAFL 773
KT QVI+FL
Sbjct: 92 KTVQVISFL 100
Score = 39 (18.8 bits), Expect = 1.9e-44, Sum P(6) = 1.9e-44
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 1025 EKIRKSFFAGYQALAQIWNHPGILQ 1049
E ++ +F+ L ++ NH +LQ
Sbjct: 373 ESVKTLYFSYLAVLQKVANHVALLQ 397
Score = 39 (18.8 bits), Expect = 1.9e-44, Sum P(6) = 1.9e-44
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 1283 QQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDK 1342
+Q+ ++KE +F +DE + + +K + S N +L L G S K
Sbjct: 673 EQLAEPLAKEACDFCSDFSEDELGNSVVKTAKN--KASDSNKTSGSPGQLTLLQCGFS-K 729
Query: 1343 LMES 1346
L E+
Sbjct: 730 LFET 733
Score = 37 (18.1 bits), Expect = 1.9e-44, Sum P(6) = 1.9e-44
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 298 NEKELALSEEQRKKFRKVKEEDD 320
NEK L EE++ ++++E++D
Sbjct: 7 NEK---LCEERKVPLKRLQEDED 26
>WB|WBGene00013792 [details] [associations]
symbol:Y116A8C.13 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0033554 "cellular response to stress" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0033554 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
GeneTree:ENSGT00700000105778 EMBL:AL117204 GeneID:190999
KEGG:cel:CELE_Y116A8C.13 CTD:190999 PIR:T31515
RefSeq:NP_001255913.1 ProteinModelPortal:Q9U2S8 SMR:Q9U2S8
PaxDb:Q9U2S8 EnsemblMetazoa:Y116A8C.13a UCSC:Y116A8C.13
WormBase:Y116A8C.13a HOGENOM:HOG000015986 InParanoid:Q9U2S8
OMA:KICNHPS NextBio:947616 ArrayExpress:Q9U2S8 Uniprot:Q9U2S8
Length = 833
Score = 280 (103.6 bits), Expect = 3.0e-44, Sum P(5) = 3.0e-44
Identities = 69/187 (36%), Positives = 107/187 (57%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ L+D++ + + +++ S I TLD+I+ L K+ RL
Sbjct: 516 SGKLTALVDMIKCFRLLQECTVIVSNYIETLDMIQQLCEYL-----NFKV-------LRL 563
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T+ +RQKLV FN+ + L+ST+AG +G+NL A+R+++ D WNP D Q
Sbjct: 564 DGKTQVPDRQKLVRTFNDHRDPS-NIFLLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQ 622
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISK---EE 1293
A+ R WR GQ +P YRL+ GT+EEK+ +RQ+ K GL V+D +V TI+ E+
Sbjct: 623 AMARIWRDGQVRPCHIYRLITTGTIEEKMLQRQIKKTGLGC-VIDAIEVGDTIATFTDED 681
Query: 1294 MLHLFEF 1300
+ +F F
Sbjct: 682 LKDIFTF 688
Score = 161 (61.7 bits), Expect = 3.0e-44, Sum P(5) = 3.0e-44
Identities = 40/127 (31%), Positives = 69/127 (54%)
Query: 686 SAGASIEVLGDAITGYIVN---VVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQS 742
S G+S + + I +I+N ++ K AV + + + L+ HQ GI+F+++ + +
Sbjct: 165 SGGSSSSTIQEKIPPFILNEQDILDRKTTSAVTVDTRFARHLRPHQKSGIQFIFDRLRRG 224
Query: 743 IRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA---LIVTPVNVLHNW 799
K+G G G ILA MGLGK+ Q +A + ++ + A LI+ P ++++NW
Sbjct: 225 --SGKNGGGG-GAILADDMGLGKSLQTMAATWALLKGSKTAQQLANSCLIIVPSSLVNNW 281
Query: 800 KQEFMKW 806
K EF KW
Sbjct: 282 KAEFDKW 288
Score = 155 (59.6 bits), Expect = 3.0e-44, Sum P(5) = 3.0e-44
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
D++VCDE H +KN + L ++ RR+ LTG+P+QN+ E+Y ++DFVR GS
Sbjct: 338 DVMVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFEEFYSLLDFVRPSVFGSI 397
Query: 935 HEFR 938
EFR
Sbjct: 398 VEFR 401
Score = 61 (26.5 bits), Expect = 3.0e-44, Sum P(5) = 3.0e-44
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 959 KIMNQRSHILYEQL-KGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGF 1017
K+ + R L E + + ++R +V K LP K +++ SP+Q+ ++ D
Sbjct: 402 KMCSDRPEQLNELIDECMLRRTAADVDLKHLPEKHEYILFCAASPIQKHVHSEICDY--M 459
Query: 1018 TNDRVSNEKIRKSFFAGYQALAQIWNHPGIL 1048
T D +S FFA Q+ NHP +L
Sbjct: 460 TGDALS-----LIFFA-----RQLANHPKLL 480
Score = 39 (18.8 bits), Expect = 3.0e-44, Sum P(5) = 3.0e-44
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 168 GSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDI 227
G+ E R+ + FL E P K L + ++ F+ I ++ S +GG S I
Sbjct: 120 GNSENVENRKRGGFSSPFLGIELP------KPLSKRSATFVPPLIGSESSSSGGSSSSTI 173
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 313 (115.2 bits), Expect = 4.6e-44, Sum P(3) = 4.6e-44
Identities = 77/189 (40%), Positives = 108/189 (57%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 535
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ER++ +E FN P + R ++STRAG LGINL SA+ VI+ D WNP DLQ
Sbjct: 536 DGQTPHEEREEAIEAFNVPNSSRF-IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQ 594
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR----QQVHRTISKE 1292
A+ RA R GQ KPV +RL+ T+EE+I +R K L + V+ + Q ++KE
Sbjct: 595 AMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKMAKE 654
Query: 1293 EMLHLFEFG 1301
EML + G
Sbjct: 655 EMLQMIRHG 663
Score = 180 (68.4 bits), Expect = 4.6e-44, Sum P(3) = 4.6e-44
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 311 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 370
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 371 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 418
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 419 YLGLSKMQREWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 466
Score = 117 (46.2 bits), Expect = 4.6e-44, Sum P(3) = 4.6e-44
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 202 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 260
Query: 810 ELKPLRVFMLEDVSRDRRAELL 831
LRV +D RA +
Sbjct: 261 ----LRVICFVG-DKDARAAFI 277
>ZFIN|ZDB-GENE-110411-274 [details] [associations]
symbol:si:ch211-248d20.2 "si:ch211-248d20.2"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-110411-274
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:CR376747 IPI:IPI00994578 RefSeq:XP_689596.5 UniGene:Dr.83737
Ensembl:ENSDART00000122774 Ensembl:ENSDART00000125173 GeneID:553504
KEGG:dre:553504 NextBio:20880249 Uniprot:F1QJP0
Length = 1269
Score = 293 (108.2 bits), Expect = 6.3e-44, Sum P(3) = 6.3e-44
Identities = 69/172 (40%), Positives = 101/172 (58%)
Query: 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYR 1175
YSGKM ++ +L DK L+FS S LD++E Y +G +++R
Sbjct: 440 YSGKMKVMQKLLNHFIAKKDKVLLFSLSTKLLDVLESYCMA------------EGLEYHR 487
Query: 1176 LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1235
LDG T+S +R K+V+ FN ++ V L+ST AG LG+N AN V++ D +WNP DL
Sbjct: 488 LDGNTKSKDRVKIVKEFNS--SRDVNLCLVSTLAGGLGLNFIGANVVVLFDPTWNPANDL 545
Query: 1236 QAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR 1287
QAI R +R GQ + V +RL++ GT+EE IY RQV K+ L + V+ ++ R
Sbjct: 546 QAIDRVYRIGQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVIGQENARR 597
Score = 281 (104.0 bits), Expect = 6.3e-44, Sum P(3) = 6.3e-44
Identities = 95/310 (30%), Positives = 150/310 (48%)
Query: 714 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 773
V++P +I+ L+ +Q GI+F+++N +S GCIL MGLGKT QVI FL
Sbjct: 50 VKVPYTINRYLRDYQREGIKFIYQNYAKS----------RGCILGDDMGLGKTVQVIGFL 99
Query: 774 YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLE---DVSRDRRAEL 830
++ T +V +N Q + +PSE + +VF++ V + + EL
Sbjct: 100 AAVLQKTG---------TWKDVENNRPQFLLSQKPSE-RVQKVFVIVAPLSVLYNWKDEL 149
Query: 831 LAKWRAKGGVFLIGYTAFRNLSF---GKHVKDRNMAREICHALQDGPDI----LVCDEAH 883
W V + G L+ G+ + L I ++ DEAH
Sbjct: 150 -DTWGHFRVVVVHGVRKDEELARVQRGRCEIALTTYETLRLCLDQFNSINWAAVIVDEAH 208
Query: 884 MIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQN 943
IKN ++ TQA+KQ++C+ RI LTG+ LQNNL E +C++++ LGS F+NRF +
Sbjct: 209 KIKNHKSKITQAVKQMRCKVRIGLTGTILQNNLEELWCVMNWAVPRCLGSLGAFKNRFSD 268
Query: 944 PIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPL 1003
PIE GQ T + + L ++L + R +++ LP K V+ L+
Sbjct: 269 PIEKGQKHTVTKRALAEGRKAVQELAKKLSRWFLRRTKSLISDQLPKKDDRVVYCSLTDF 328
Query: 1004 QRRLYKRFLD 1013
QR +Y+ LD
Sbjct: 329 QRTVYRAVLD 338
Score = 39 (18.8 bits), Expect = 6.3e-44, Sum P(3) = 6.3e-44
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 1027 IRKSFFAGYQALAQIWNHPGILQLTKD 1053
+R +F+ L ++ NH +LQ +KD
Sbjct: 374 VRHLYFSYLAILRKVANHVALLQ-SKD 399
Score = 37 (18.1 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 303 ALSEEQRKKFRKVKEEDDANM 323
+L++ QR +R V + DD +
Sbjct: 324 SLTDFQRTVYRAVLDSDDVTL 344
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 299 (110.3 bits), Expect = 2.3e-43, Sum P(3) = 2.3e-43
Identities = 74/194 (38%), Positives = 112/194 (57%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
++ SGKM+ L+D+L + G ++LVFSQS L++IE L + + +K
Sbjct: 456 MEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLL--------KNRHFKT---- 503
Query: 1174 YRLDGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1232
R+DG T ER+K + F + NK L++T+ G +G+ L +A RV+I D SWNP
Sbjct: 504 LRIDGTVTHLLEREKRINLFQQ--NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPA 561
Query: 1233 YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVV-DRQQVHRTISK 1291
D QA+ R +R GQ + V YRL+ GT+EEKIY+RQV K+ L + +++ R SK
Sbjct: 562 TDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSK 621
Query: 1292 EEMLHLFEFGDDEN 1305
+E+ LF D +N
Sbjct: 622 QELRELFTIEDLQN 635
Score = 265 (98.3 bits), Expect = 2.3e-43, Sum P(3) = 2.3e-43
Identities = 73/235 (31%), Positives = 120/235 (51%)
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 813
G ILA MGLGKT Q+IAFL + M +L + L++ P N+++ W +EF+KW P
Sbjct: 117 GGILADDMGLGKTVQIIAFL-SGMFDASL-VNHVLLIMPTNLINTWVKEFIKWTPG---- 170
Query: 814 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
+RV S+D R L + + + GV + Y N ++ + R +E
Sbjct: 171 MRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLIN-NWQQLSSFRG--QEFVW----- 222
Query: 874 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 932
D ++ DEAH IK + + + + R+ LTG+P+QNNL E + + DF +G LG
Sbjct: 223 -DYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLG 281
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKK 986
+ F+ ++NPI + ++T + + + S L +K F++R +V KK
Sbjct: 282 TLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQKK 336
Score = 43 (20.2 bits), Expect = 2.3e-43, Sum P(3) = 2.3e-43
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 1296 HLFEFGDDE-----NPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSD 1341
+L + DDE NP P+ +++ E+ S + + L SH D
Sbjct: 880 NLDQLKDDEILRHCNPWPIISITNESQNAESNVSIIEIADDLSASHSALQD 930
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 305 (112.4 bits), Expect = 2.4e-43, Sum P(4) = 2.4e-43
Identities = 74/188 (39%), Positives = 110/188 (58%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKM+ L+ +L + G ++LVFSQSI L++IE L + K +K R+
Sbjct: 462 SGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIERLL--------KNKHFKT----LRI 509
Query: 1177 DGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1235
DG T ER+K ++ F + NK L++T+ G +G+ L +A RV+I D SWNP D
Sbjct: 510 DGTVTHLWEREKRIQLFQQ--NKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDA 567
Query: 1236 QAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVV-DRQQVHRTISKEEM 1294
QA+ R +R GQ + V YRL+ GT+EEKIY+RQV K+ L + +++ R +K+E+
Sbjct: 568 QAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFTKQEL 627
Query: 1295 LHLFEFGD 1302
LF GD
Sbjct: 628 KELFTVGD 635
Score = 251 (93.4 bits), Expect = 2.4e-43, Sum P(4) = 2.4e-43
Identities = 71/240 (29%), Positives = 118/240 (49%)
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 813
G ILA MGLGKT Q+IAFL + M +L + L++ P N+++ W EF KW P
Sbjct: 118 GGILADDMGLGKTVQIIAFL-SGMFDASL-VNHVLLIMPTNLINTWVNEFAKWTPG---- 171
Query: 814 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
+RV S+ R L + + + GV + Y L+ + + N +
Sbjct: 172 MRVKTFHGSSKSERTRSLTRIQQRNGVVITTYQML--LNNWQQLASFNGQAFVW------ 223
Query: 874 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 932
D ++ DEAH IK+ + + + R+ LTG+P+QNNL E + + DF +G LG
Sbjct: 224 -DYVILDEAHKIKSASTKSAVCARAIPASNRLLLTGTPVQNNLQELWSLFDFACQGSLLG 282
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRM--DMNVVKKDLP 989
+ F+ +++PI + ++T + + + S L E +K F++R ++ K D P
Sbjct: 283 TLKTFKMEYEHPIIRAREKDATPGEKALGLKISENLMEIIKPYFLRRTKEEVQTKKADNP 342
Score = 58 (25.5 bits), Expect = 2.4e-43, Sum P(4) = 2.4e-43
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 988 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIR-KSFFAGYQALAQIWNHPG 1046
L K ++ ++L PLQ +Y++F+ L D + + +S A L ++ +HP
Sbjct: 362 LARKNDLIVWIRLLPLQEEIYRKFVSL-----DHIKELLMETRSPLAELGVLKKLCDHPR 416
Query: 1047 IL 1048
+L
Sbjct: 417 LL 418
Score = 40 (19.1 bits), Expect = 2.4e-43, Sum P(4) = 2.4e-43
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 79 SLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQL--DG 135
S ++ E E+LA+ D+ + +Y+E +E L E + E L L DG
Sbjct: 58 SRIQKLQEALEQLAEEEDDDEFIDVCSSGLLLYRELYEK-LFEHQKEGIAFLYSLYKDG 115
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 298 (110.0 bits), Expect = 1.1e-42, Sum P(3) = 1.1e-42
Identities = 73/189 (38%), Positives = 107/189 (56%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKM++L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 409 SGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYC-----------MWR-GYEYCRL 456
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ER++ ++ FN P N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 457 DGQTPHEEREEAIDTFNAP-NSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 515
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR----QQVHRTISKE 1292
A+ RA R GQ KPV +RL+ T+EE+I +R K L + V+ + Q ++K+
Sbjct: 516 AMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKD 575
Query: 1293 EMLHLFEFG 1301
EML + G
Sbjct: 576 EMLQMIRHG 584
Score = 182 (69.1 bits), Expect = 1.1e-42, Sum P(3) = 1.1e-42
Identities = 56/171 (32%), Positives = 86/171 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 232 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 291
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 292 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKAEVEKSLPPKKEVKI 339
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 340 YLGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 387
Score = 116 (45.9 bits), Expect = 1.1e-42, Sum P(3) = 1.1e-42
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 123 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 181
Query: 810 ELKPLRVFMLEDVSRDRRAELL 831
L+ V ++ D +D RA +
Sbjct: 182 -LRA--VCLIGD--KDARAAFI 198
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 286 (105.7 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 74/203 (36%), Positives = 113/203 (55%)
Query: 1105 LLHE--HTYKEL-DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPG 1161
++H+ +K+L + GK+ LL ++ G + L+++Q LDL+E Y +
Sbjct: 579 VIHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTH----- 633
Query: 1162 KQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANR 1221
K W+ + R+DG+ +ERQ ++RFN N C L+STRAG LGINL +A+
Sbjct: 634 ---KKWQ----YERIDGKVGGAERQIRIDRFNAK-NSNKFCFLLSTRAGGLGINLATADT 685
Query: 1222 VIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD 1281
VII D WNP DLQA+ RA R GQT V YRL+ GT+EE++ + K L VV
Sbjct: 686 VIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVG 745
Query: 1282 RQQVHRTISKEEMLHLFEFGDDE 1304
+ + + I++EE+ + +G E
Sbjct: 746 KLKT-QNINQEELDDIIRYGSKE 767
Score = 234 (87.4 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 79/269 (29%), Positives = 118/269 (43%)
Query: 748 SGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWR 807
S K ILA MGLGKT Q IA L + L L++ P++ L NW++EF W
Sbjct: 287 SWSKQTHVILADEMGLGKTIQSIALLASLFEE---NLIPHLVIAPLSTLRNWEREFATWA 343
Query: 808 PSELKPLRVF---MLEDVSRDRRAELLA---KWRAKGGVFLIGYTAFRNLSFGKHVKDRN 861
P ++ + F V R+ L K + K + + + + F +
Sbjct: 344 P-QMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYE 402
Query: 862 MAREICHALQDGP-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYY 920
M L+ + ++ DE H +KN + +L Q RI LTG+PLQNNL E +
Sbjct: 403 MINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELF 462
Query: 921 CMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMD 980
++ F+ G GS EF+ F+ D+ Q S L++ L + R
Sbjct: 463 MLMHFLDAGKFGSLEEFQEEFK--------------DINQEEQISR-LHKMLAPHLLRRV 507
Query: 981 MNVVKKDLPPKTVFVITVKLSPLQRRLYK 1009
V KD+PPK ++ V LS LQ+ YK
Sbjct: 508 KKDVMKDMPPKKELILRVDLSSLQKEYYK 536
Score = 82 (33.9 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 531 DCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCC-CCSP 586
D E C CG S++LVSC +C F C+ + +A + + W+C C SP
Sbjct: 46 DAKENACQACGESTNLVSCNTCTYAFHAKCLVPPLKDASVEN------WRCPECVSP 96
Score = 46 (21.3 bits), Expect = 7.6e-39, Sum P(3) = 7.6e-39
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 480 NSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECY 536
N+ H Q E F + + VAI + ++ C++ LE + K+ ECY
Sbjct: 166 NNFHRQM--ESFNNSEDDFVAIRPEWTTVDRILACREEDGELEYLVKYKELSYDECY 220
Score = 42 (19.8 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 293 ADAIANEKELALSEEQRKKFRKVK 316
A A+ E E LS++Q KK +K K
Sbjct: 357 ARAVIREHEFYLSKDQ-KKIKKKK 379
Score = 39 (18.8 bits), Expect = 7.5e-17, Sum P(3) = 7.5e-17
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1160 PG-KQGKLWKKGKD 1172
PG + GK+WK+ D
Sbjct: 1061 PGLRSGKIWKEEHD 1074
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 308 (113.5 bits), Expect = 1.8e-42, Sum P(4) = 1.8e-42
Identities = 76/189 (40%), Positives = 106/189 (56%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 489 SGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYSRL 536
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ER++ ++ FN P N ++STRAG LGINL SA+ VI+ D WNP DLQ
Sbjct: 537 DGQTPHEEREEAIDAFNAP-NSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQ 595
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR----QQVHRTISKE 1292
A+ RA R GQ KPV +RL+ T+EE+I +R K L + V+ + Q ++KE
Sbjct: 596 AMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKE 655
Query: 1293 EMLHLFEFG 1301
EML + G
Sbjct: 656 EMLQMIRHG 664
Score = 180 (68.4 bits), Expect = 1.8e-42, Sum P(4) = 1.8e-42
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 312 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 371
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 372 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 419
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 420 YLGLSKMQREWYTKILMKDID-VLNSSGKMDKMR--LLNILMQLRKCCNHP 467
Score = 115 (45.5 bits), Expect = 1.8e-42, Sum P(4) = 1.8e-42
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 203 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 261
Score = 38 (18.4 bits), Expect = 1.8e-42, Sum P(4) = 1.8e-42
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 708 EKGEEAVRIPSSISAKLKA 726
EKGE+ +I S KL A
Sbjct: 51 EKGEKKEKITSPFQLKLAA 69
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 281 (104.0 bits), Expect = 2.3e-42, Sum P(2) = 2.3e-42
Identities = 70/193 (36%), Positives = 106/193 (54%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
S K+ ++ +L G + L+FSQ+ L+LI Q L G + R+
Sbjct: 731 SCKLSFIMSLLENLIPEGHRVLIFSQTRKMLNLI------------QDSLTSNGYSFLRI 778
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T++ +R K VE F E L++++ G LG+ L A+RVI+VD +WNP+ D Q
Sbjct: 779 DGTTKAPDRLKTVEEFQE--GHVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ 836
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLH 1296
++ RA+R GQTK V YRLM T+EEKIY++QV K GL + ++ R S++++
Sbjct: 837 SVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRE 896
Query: 1297 LFEF---GDDENP 1306
LF G D +P
Sbjct: 897 LFSLPKGGFDVSP 909
Score = 264 (98.0 bits), Expect = 2.3e-42, Sum P(2) = 2.3e-42
Identities = 89/310 (28%), Positives = 147/310 (47%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G G IL MGLGKT Q+ +FL S L ++ AL+V P +L +W +E S+
Sbjct: 394 QGKGGILGDDMGLGKTMQICSFLAGLFHS-KL-IKRALVVAPKTLLPHWMKELATVGLSQ 451
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL 870
+ R + ++ R +L + KG + L Y RN + D +
Sbjct: 452 MT--REYYGTS-TKAREYDLHHILQGKG-ILLTTYDIVRNNTKALQGDDHYTDEDD---- 503
Query: 871 QDGP--DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+DG D ++ DE H+IKN ++L ++ RI ++G+P+QNNL E + + +F
Sbjct: 504 EDGNKWDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNFSCP 563
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGF-VQRMDMNVVKKD 987
G LG + F+ +++ I G N+T + +I + + L E ++ F ++R+ V D
Sbjct: 564 GLLGDKNWFKQNYEHYILRGTDKNATDREQRIGSTVAKNLREHIQPFFLRRLKSEVFGDD 623
Query: 988 -----LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIW 1042
L K V+ ++L+ QR+LY+ FL N + S A L +I
Sbjct: 624 GATSKLSKKDEIVVWLRLTACQRQLYEAFL------NSEIVLSAFDGSPLAALTILKKIC 677
Query: 1043 NHPGILQLTK 1052
+HP L LTK
Sbjct: 678 DHP--LLLTK 685
Score = 106 (42.4 bits), Expect = 8.4e-26, Sum P(2) = 8.4e-26
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
+P I+ L HQ G+ ++W S+ +G G IL MGLGKT Q+ +FL
Sbjct: 369 LPGKIATMLYPHQREGLNWLW-----SLHT-----QGKGGILGDDMGLGKTMQICSFLAG 418
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQE 802
S L ++ AL+V P +L +W +E
Sbjct: 419 LFHS-KL-IKRALVVAPKTLLPHWMKE 443
Score = 45 (20.9 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 93 QALHGDDLEAAVEDEMTVYKEQWE-AALDELETESAHLLE----QLDGAGIELPSLYRLI 147
+AL GDD +DE +W+ LDE HL++ Q + +E+PS +R+I
Sbjct: 490 KALQGDDHYTDEDDEDG---NKWDYMILDE-----GHLIKNPNTQRAKSLLEIPSSHRII 541
Query: 148 ENQVP-NGCCTEAW 160
+ P E W
Sbjct: 542 ISGTPIQNNLKELW 555
Score = 38 (18.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 95 LHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNG 154
L G D ++E V + D ++T+ D +L + L+EN +P G
Sbjct: 692 LEGMD-STLTQEEAGVAERLAMHIADNVDTDDFQTKN--DSISCKLSFIMSLLENLIPEG 748
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 291 (107.5 bits), Expect = 2.6e-42, Sum P(3) = 2.6e-42
Identities = 74/190 (38%), Positives = 106/190 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 481 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 528
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ERQ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 529 DGQTPHDERQDSINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 587
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-----QQVHRTISK 1291
A+ RA R GQTK V +R + T+EE+I +R K L + V+ + Q +++ I K
Sbjct: 588 AMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK-IGK 646
Query: 1292 EEMLHLFEFG 1301
+EML + G
Sbjct: 647 DEMLQMIRHG 656
Score = 188 (71.2 bits), Expect = 2.6e-42, Sum P(3) = 2.6e-42
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 304 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 363
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 364 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 411
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 412 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 459
Score = 115 (45.5 bits), Expect = 2.6e-42, Sum P(3) = 2.6e-42
Identities = 31/94 (32%), Positives = 47/94 (50%)
Query: 717 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 171 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 220
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
N+ +++ P + LHNW EF KW P+
Sbjct: 221 MKHYRNIP-GPHMVLVPKSTLHNWMSEFKKWVPT 253
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 293 (108.2 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 74/190 (38%), Positives = 107/190 (56%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 482 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 529
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ERQ+ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 530 DGQTPHDERQESINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 588
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-----QQVHRTISK 1291
A+ RA R GQTK V +R + T+EE+I +R K L + V+ + Q +++ I K
Sbjct: 589 AMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK-IGK 647
Query: 1292 EEMLHLFEFG 1301
+EML + G
Sbjct: 648 DEMLQMIRHG 657
Score = 188 (71.2 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 305 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 364
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 365 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 412
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 413 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 460
Score = 112 (44.5 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 717 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 172 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 221
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
N+ +++ P + LHNW EF +W P+
Sbjct: 222 MKHYRNIP-GPHMVLVPKSTLHNWMSEFKRWVPT 254
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 293 (108.2 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 74/190 (38%), Positives = 107/190 (56%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 482 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 529
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ERQ+ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 530 DGQTPHDERQESINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 588
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-----QQVHRTISK 1291
A+ RA R GQTK V +R + T+EE+I +R K L + V+ + Q +++ I K
Sbjct: 589 AMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK-IGK 647
Query: 1292 EEMLHLFEFG 1301
+EML + G
Sbjct: 648 DEMLQMIRHG 657
Score = 188 (71.2 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 305 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 364
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 365 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 412
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 413 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 460
Score = 112 (44.5 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 717 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 172 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 221
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
N+ +++ P + LHNW EF +W P+
Sbjct: 222 MKHYRNIP-GPHMVLVPKSTLHNWMSEFKRWVPT 254
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 293 (108.2 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 74/190 (38%), Positives = 107/190 (56%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 482 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 529
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ERQ+ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 530 DGQTPHDERQESINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 588
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-----QQVHRTISK 1291
A+ RA R GQTK V +R + T+EE+I +R K L + V+ + Q +++ I K
Sbjct: 589 AMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK-IGK 647
Query: 1292 EEMLHLFEFG 1301
+EML + G
Sbjct: 648 DEMLQMIRHG 657
Score = 188 (71.2 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 305 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 364
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 365 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 412
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 413 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 460
Score = 112 (44.5 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 717 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 172 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 221
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
N+ +++ P + LHNW EF +W P+
Sbjct: 222 MKHYRNIP-GPHMVLVPKSTLHNWMSEFKRWVPT 254
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 287 (106.1 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 72/190 (37%), Positives = 107/190 (56%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 467 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 514
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ERQ + +NEP + + ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 515 DGQTPHDERQASINAYNEPGSSKF-VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 573
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-----QQVHRTISK 1291
A+ RA R GQTK V +R + T+EE+I +R K L + V+ + Q +++ + K
Sbjct: 574 AMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK-LGK 632
Query: 1292 EEMLHLFEFG 1301
+EML + G
Sbjct: 633 DEMLQMIRHG 642
Score = 192 (72.6 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 58/171 (33%), Positives = 88/171 (51%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ SS +
Sbjct: 290 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSED 349
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 350 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 397
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 398 YVGLSKMQREWYTRILMKDID-ILNSAGKLDKMR--LLNILMQLRKCCNHP 445
Score = 114 (45.2 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 36/113 (31%), Positives = 58/113 (51%)
Query: 717 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 157 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 206
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 828
N+ +++ P + LHNW EF +W P+ L+ V ++ D +D+RA
Sbjct: 207 MKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPT-LRA--VCLIGD--KDQRA 253
>UNIPROTKB|B5MDQ0 [details] [associations]
symbol:ERCC6L "FLJ20105 protein, isoform CRA_a"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135749 EMBL:CH471213
HOGENOM:HOG000074172 HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD
UniGene:Hs.47558 HGNC:HGNC:20794 IPI:IPI00873388 SMR:B5MDQ0
IntAct:B5MDQ0 STRING:B5MDQ0 Ensembl:ENST00000373657 Uniprot:B5MDQ0
Length = 1127
Score = 299 (110.3 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 74/194 (38%), Positives = 112/194 (57%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
++ SGKM+ L+D+L + G ++LVFSQS L++IE L + + +K
Sbjct: 333 MEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLL--------KNRHFKT---- 380
Query: 1174 YRLDGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1232
R+DG T ER+K + F + NK L++T+ G +G+ L +A RV+I D SWNP
Sbjct: 381 LRIDGTVTHLLEREKRINLFQQ--NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPA 438
Query: 1233 YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVV-DRQQVHRTISK 1291
D QA+ R +R GQ + V YRL+ GT+EEKIY+RQV K+ L + +++ R SK
Sbjct: 439 TDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSK 498
Query: 1292 EEMLHLFEFGDDEN 1305
+E+ LF D +N
Sbjct: 499 QELRELFTIEDLQN 512
Score = 252 (93.8 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 69/228 (30%), Positives = 116/228 (50%)
Query: 761 MGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLE 820
MGLGKT Q+IAFL + M +L + L++ P N+++ W +EF+KW P +RV
Sbjct: 1 MGLGKTVQIIAFL-SGMFDASL-VNHVLLIMPTNLINTWVKEFIKWTPG----MRVKTFH 54
Query: 821 DVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 880
S+D R L + + + GV + Y N ++ + R +E D ++ D
Sbjct: 55 GPSKDERTRNLNRIQQRNGVIITTYQMLIN-NWQQLSSFRG--QEFVW------DYVILD 105
Query: 881 EAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLGSSHEFRN 939
EAH IK + + + + R+ LTG+P+QNNL E + + DF +G LG+ F+
Sbjct: 106 EAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKM 165
Query: 940 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG-FVQRMDMNVVKK 986
++NPI + ++T + + + S L +K F++R +V KK
Sbjct: 166 EYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQKK 213
Score = 43 (20.2 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 1296 HLFEFGDDE-----NPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSD 1341
+L + DDE NP P+ +++ E+ S + + L SH D
Sbjct: 757 NLDQLKDDEILRHCNPWPIISITNESQNAESNVSIIEIADDLSASHSALQD 807
>UNIPROTKB|F1NYG8 [details] [associations]
symbol:F1NYG8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 EMBL:AADN02067869 EMBL:AADN02067866
EMBL:AADN02067867 EMBL:AADN02067868 IPI:IPI00682975
Ensembl:ENSGALT00000020603 OMA:PEINICL Uniprot:F1NYG8
Length = 879
Score = 281 (104.0 bits), Expect = 4.9e-42, Sum P(2) = 4.9e-42
Identities = 72/175 (41%), Positives = 98/175 (56%)
Query: 1110 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1169
T + YSGKM +L +L DK L+FS S LD++E Y
Sbjct: 410 TISDPKYSGKMRVLQQLLNHFRKNKDKVLLFSFSTKLLDVLEQYCIA------------S 457
Query: 1170 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW 1229
G D+ RLDG T+S +R ++V FN + L+ST AG LG+N AN VI+ D +W
Sbjct: 458 GLDFRRLDGSTKSEDRIRIVREFNRV--PEINICLVSTMAGGLGLNFVGANVVILFDPTW 515
Query: 1230 NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ 1284
NP DLQAI RA+R GQ K V +RL++ GT+EE +Y RQV K+ L A ++ Q+
Sbjct: 516 NPANDLQAIDRAYRIGQCKDVKVFRLISLGTVEEMMYLRQVYKQ-LLAYIIQGQK 569
Score = 258 (95.9 bits), Expect = 4.9e-42, Sum P(2) = 4.9e-42
Identities = 86/313 (27%), Positives = 143/313 (45%)
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
IP +I+ L+ +Q G +F++ + GCIL MGLGKT QVI+FL
Sbjct: 26 IPYTINRYLRGYQREGAQFLYWHYANK----------RGCILGDDMGLGKTVQVISFLAA 75
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 835
+ G R + N + + Q MK + S+ P + F++ V+ +L W+
Sbjct: 76 VLHKK--GTREDI----ENNMPEFLQRTMK-KESKCNPKKTFLI--VAP---LSVLYNWK 123
Query: 836 AKGGVFLIGYTAFRNLSFGKHVKDRNMARE-ICHA-----------LQD----GPDILVC 879
+ + GY L K D N ++ C L + G ++
Sbjct: 124 DELDTW--GYFKVSVLHGSKKEGDLNRIKQGKCEVALTTYETLRLYLDELNNIGWSAVIV 181
Query: 880 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 939
DE H IKN ++ TQ +K +KC RI LTG+ LQNN+ E +C++D+ G LGS F+
Sbjct: 182 DEVHRIKNPKSQITQTMKSLKCNVRIGLTGTILQNNMNELWCVMDWAVPGLLGSRVHFKK 241
Query: 940 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVK 999
+F +P+E GQ +T ++ + L ++ + R ++ LP K ++
Sbjct: 242 KFSDPLERGQRHTATKRELATGRKAMVKLARKMSSWFLRRTKVLISDQLPKKEDRMVYCS 301
Query: 1000 LSPLQRRLYKRFL 1012
L+ Q+ +Y+ L
Sbjct: 302 LTEFQKAVYRAVL 314
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 291 (107.5 bits), Expect = 5.4e-42, Sum P(3) = 5.4e-42
Identities = 74/190 (38%), Positives = 106/190 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 481 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 528
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ERQ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 529 DGQTPHDERQDSINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 587
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-----QQVHRTISK 1291
A+ RA R GQTK V +R + T+EE+I +R K L + V+ + Q +++ I K
Sbjct: 588 AMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK-IGK 646
Query: 1292 EEMLHLFEFG 1301
+EML + G
Sbjct: 647 DEMLQMIRHG 656
Score = 188 (71.2 bits), Expect = 5.4e-42, Sum P(3) = 5.4e-42
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 304 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 363
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 364 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 411
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 412 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 459
Score = 112 (44.5 bits), Expect = 5.4e-42, Sum P(3) = 5.4e-42
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 717 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 171 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 220
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
N+ +++ P + LHNW EF +W P+
Sbjct: 221 MKHYRNIP-GPHMVLVPKSTLHNWMSEFKRWVPT 253
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 291 (107.5 bits), Expect = 5.4e-42, Sum P(3) = 5.4e-42
Identities = 74/190 (38%), Positives = 106/190 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 482 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 529
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ERQ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 530 DGQTPHDERQDSINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 588
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-----QQVHRTISK 1291
A+ RA R GQTK V +R + T+EE+I +R K L + V+ + Q +++ I K
Sbjct: 589 AMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK-IGK 647
Query: 1292 EEMLHLFEFG 1301
+EML + G
Sbjct: 648 DEMLQMIRHG 657
Score = 188 (71.2 bits), Expect = 5.4e-42, Sum P(3) = 5.4e-42
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 305 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 364
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 365 FDSWFD--------TNNCLGDQKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 412
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 413 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 460
Score = 112 (44.5 bits), Expect = 5.4e-42, Sum P(3) = 5.4e-42
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 717 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
PS + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 172 PSYVKWGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 221
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
N+ +++ P + LHNW EF +W P+
Sbjct: 222 MKHYRNIP-GPHMVLVPKSTLHNWMSEFKRWVPT 254
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 301 (111.0 bits), Expect = 8.1e-42, Sum P(4) = 8.1e-42
Identities = 74/194 (38%), Positives = 110/194 (56%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
+D SGKM LL +L G + L+FSQ LD++E Y+ L++ G +
Sbjct: 577 IDNSGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILEDYM-----------LYR-GYKY 624
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
R+DG TES R+ +E +N+P + L++TRAG LGI L++A+ VI+ D WNP
Sbjct: 625 ARIDGSTESIVRENSIENYNKP-GSDLFAFLLTTRAGGLGITLNTADIVILFDSDWNPQM 683
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV---HRTIS 1290
DLQA RA R GQTKPV YR + +MEEK+ ++ K L A V+ + ++ ++
Sbjct: 684 DLQAQDRAHRIGQTKPVTVYRFVTENSMEEKMVEKAEMKLQLDALVIQQGRLVEANKNAK 743
Query: 1291 KEEMLHLFEFGDDE 1304
EE+L + FG D+
Sbjct: 744 PEELLAMLRFGADD 757
Score = 177 (67.4 bits), Expect = 8.1e-42, Sum P(4) = 8.1e-42
Identities = 52/182 (28%), Positives = 87/182 (47%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
++ DEAH IKN + ++ ++ Q R+ +TG+PLQNNL E + +++F+ SS +
Sbjct: 401 IIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLHELWSLLNFLLPDVFSSSDD 460
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F F N+T +++++ L++ L+ F+ R V+K LPPK +
Sbjct: 461 FDKWFDL-------ANNTENQQEVIDK----LHKVLRPFLLRRIKTEVEKSLPPKKEIKL 509
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK 1054
V LS +Q+ YKR L DL N R L + NHP + +++
Sbjct: 510 FVGLSTMQKEWYKRLLSKDLDAVVVGAKGNTG-RVRLLNICMQLRKACNHPYLFDGAEEE 568
Query: 1055 GY 1056
Y
Sbjct: 569 PY 570
Score = 115 (45.5 bits), Expect = 8.1e-42, Sum P(4) = 8.1e-42
Identities = 47/160 (29%), Positives = 76/160 (47%)
Query: 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 780
S ++ +QV G+ W +IQ ++G+ ILA MGLGKT Q I+ L S
Sbjct: 273 SGTMRDYQVYGLN--W--LIQLY------ERGINGILADEMGLGKTLQTISLL--GYLSE 320
Query: 781 NLGLRTA-LIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRD-RRAELLAKWRAKG 838
G+R LI+ P + L W +EF +W P L+ +R ++ D ++ +L+ K K
Sbjct: 321 YKGIRGPHLIIAPKSTLSGWAKEFTRWCPF-LRVVRFHGSKEEREDIKKNQLIFK---KF 376
Query: 839 GVFLIGY-TAFRNLSFGKHVKDRNMAREICHALQDGPDIL 877
V + Y A R S K R + + H +++ +L
Sbjct: 377 DVCITTYEVAIREKSTFKKFSWRYIIIDEAHRIKNENSVL 416
Score = 46 (21.3 bits), Expect = 8.1e-42, Sum P(4) = 8.1e-42
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 640 DDAELGEET-----KRKIAIEKERQERLKSLQVQ 668
DD +L + T RK E+ R ERL+S++++
Sbjct: 104 DDEDLNDPTIQNGINRKDETEEARNERLESIRLE 137
Score = 39 (18.8 bits), Expect = 4.3e-41, Sum P(4) = 4.3e-41
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 643 ELGEETKRKIAIEKERQERLKSLQ-VQFSSKSKLMNS-VTLDGDLSAGASIEVL 694
E E I +EKER ++++ Q Q K + D + SA A ++ L
Sbjct: 125 EARNERLESIRLEKERLKQIREQQRKQLQELEKNQRQQLQEDKEKSANARLKYL 178
Score = 39 (18.8 bits), Expect = 2.0e-14, Sum P(4) = 2.0e-14
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 1145 PTLDLIEFYLSKLPRP-GKQGKLWKKGKDWYRLDGRTESSERQK 1187
P D +FY +L + K+ + + K +WY + E E ++
Sbjct: 864 PIYDF-QFYPPRLTQLYEKENEAYNKKVEWYDQKDKGELPEEEE 906
>POMBASE|SPAC22F3.03c [details] [associations]
symbol:rdh54 "ATP-dependent DNA helicase Rdh54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC22F3.03c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0004003
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007131 KO:K10877 EMBL:AY293737 PIR:S62418
PIR:T38188 RefSeq:NP_593038.2 ProteinModelPortal:Q09772
IntAct:Q09772 STRING:Q09772 EnsemblFungi:SPAC22F3.03c.1
GeneID:2541798 KEGG:spo:SPAC22F3.03c OMA:NTENTRT OrthoDB:EOG4CVKG1
NextBio:20802886 Uniprot:Q09772
Length = 811
Score = 279 (103.3 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 80/270 (29%), Positives = 134/270 (49%)
Query: 749 GDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK-WR 807
G G ILA MGLGKT Q I ++T ++ R++ I + V +K W
Sbjct: 225 GKCGYSAILADEMGLGKTLQTITVVWTLLKQSYYANRSSTINNAMVVA---PVTLLKNWE 281
Query: 808 PSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREIC 867
L + V R AE ++ + +I T + + ++++ +I
Sbjct: 282 NEFYNWLGHERIH-VYIARCAEDFQEFTSNKTYSII-ITGYETVC--TYLRNYGCGIDI- 336
Query: 868 HALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
D+L+CDEAH +K+ + T L ++K ++R+ LTG+PLQN+L EY+ MV+F+
Sbjct: 337 -------DLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQNDLSEYFSMVNFII 389
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 987
G LG+ + F+ +++ PI + N++S D+ + R L+E F R N++ K
Sbjct: 390 PGSLGTPNSFKAQYERPILRSRSMNASSRDISLGAARLQRLFEFTSNFTLRRKANILAKH 449
Query: 988 LPPKTVFVITVKLSPLQRRLYKRFLDLHGF 1017
LPP+T V+ +K + Q +Y LD GF
Sbjct: 450 LPPRTDIVLFIKPTHQQENVYGHVLD--GF 477
Score = 255 (94.8 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 68/206 (33%), Positives = 108/206 (52%)
Query: 1104 DLLHEHTYKE---LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRP 1160
+L +H +++ L S K+ +L +L K+++ SQ TL+LIE +LS L
Sbjct: 515 ELQDKHVFEQENMLLSSSKLQILAALLKSFQRGCQKAVIVSQYKETLELIELFLSILH-- 572
Query: 1161 GKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSAN 1220
+ +L G T SER +V FN K L+S++AG G+NL +
Sbjct: 573 ----------VRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGST 622
Query: 1221 RVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVV 1280
R+II + SWNP DLQA+ R +R GQ +PV Y ++ G ++E+I+ RQ TK+GL++ +
Sbjct: 623 RLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLDERIFIRQNTKQGLSSSFI 682
Query: 1281 DRQ--QVHRTISKEEMLHLFEFGDDE 1304
D Q + E++ LF + E
Sbjct: 683 DSDASQKKNFFTGEDIKTLFSYSKTE 708
Score = 133 (51.9 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 714 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 773
V I +S L +HQ G+ F+++ ++ G G ILA MGLGKT Q I +
Sbjct: 195 VVIDPFLSKHLYSHQREGVSFLYDCLLGM-----EGKCGYSAILADEMGLGKTLQTITVV 249
Query: 774 YTAMRS---VNLG--LRTALIVTPVNVLHNWKQEFMKW 806
+T ++ N + A++V PV +L NW+ EF W
Sbjct: 250 WTLLKQSYYANRSSTINNAMVVAPVTLLKNWENEFYNW 287
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 306 (112.8 bits), Expect = 1.3e-41, Sum P(3) = 1.3e-41
Identities = 78/191 (40%), Positives = 107/191 (56%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 498 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 545
Query: 1177 DGRTESSERQK--LVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
DG+T ER+K +E FN P N ++STRAG LGINL SA+ VI+ D WNP D
Sbjct: 546 DGQTPHEEREKKEAIEAFNAP-NSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVD 604
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR----QQVHRTIS 1290
LQA+ RA R GQ KPV +RL+ T+EE+I +R K L + V+ + Q ++
Sbjct: 605 LQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLA 664
Query: 1291 KEEMLHLFEFG 1301
KEEML + G
Sbjct: 665 KEEMLQMIRHG 675
Score = 170 (64.9 bits), Expect = 1.3e-41, Sum P(3) = 1.3e-41
Identities = 54/172 (31%), Positives = 86/172 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 320 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 379
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F T + D K++ +R H + LK F+ R V+K LPPK +
Sbjct: 380 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKV 427
Query: 997 TVKLSPLQRRL-YKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 428 YLGLSKMQREWWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 476
Score = 111 (44.1 bits), Expect = 1.3e-41, Sum P(3) = 1.3e-41
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N+ +++ P + L+NW EF +W PS
Sbjct: 211 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLYNWMNEFKRWVPS 269
Query: 810 ELKPLRVFMLEDVSRDRRAELL 831
LRV +D RA +
Sbjct: 270 ----LRVICFVG-DKDARAAFI 286
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 277 (102.6 bits), Expect = 2.1e-41, Sum P(5) = 2.1e-41
Identities = 68/187 (36%), Positives = 103/187 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
+GKMVLL +L + + L+FSQ LD++E YL +G + R+
Sbjct: 494 AGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMY------------RGYQYCRI 541
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T ER +E +N+P +++ L+STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 542 DGNTGGDERDASIEAYNKPGSEKF-VFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 600
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV--HRTISKEEM 1294
A RA R GQ K V +R +E K+ +R K L A V+ + ++ +T++K+E+
Sbjct: 601 AQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRLAEQKTVNKDEL 660
Query: 1295 LHLFEFG 1301
L + +G
Sbjct: 661 LQMVRYG 667
Score = 170 (64.9 bits), Expect = 2.1e-41, Sum P(5) = 2.1e-41
Identities = 52/175 (29%), Positives = 87/175 (49%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
++ DEAH IKN + ++ ++ R+ +TG+PLQNNL E + +++F+ S+
Sbjct: 319 IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAET 378
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F FQ EN Q +++ Q L++ L+ F+ R + V+K LPPK ++
Sbjct: 379 FDEWFQISGENDQQ--------EVVQQ----LHKVLRPFLLRRLKSDVEKGLPPKKETIL 426
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 1049
V +S +Q++ YK L DL + V+ RK L + NHP + Q
Sbjct: 427 KVGMSQMQKQYYKALLQKDL-----EVVNGGGERKRLLNIAMQLRKCCNHPYLFQ 476
Score = 115 (45.5 bits), Expect = 2.1e-41, Sum P(5) = 2.1e-41
Identities = 46/146 (31%), Positives = 69/146 (47%)
Query: 705 VVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLG 764
+V G + P+ I KL+ +Q+ G+ ++ IR ++G G ILA MGLG
Sbjct: 175 IVGSGGTRLLTQPACIQGKLRDYQLAGLNWL-------IRLYENGING---ILADEMGLG 224
Query: 765 KTFQVIAFL-YT-AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDV 822
KT Q I+ L Y R +N G ++V P + L NW E ++ P L+ ++ +
Sbjct: 225 KTLQTISLLAYLHEYRGIN-GPH--MVVAPKSTLGNWMNEIRRFCPV-LRAVKFLGNPEE 280
Query: 823 SRDRRAELLAKWRAKGGVFLIGYTAF 848
R R ELL G F I T+F
Sbjct: 281 RRHIREELLV-----AGKFDICVTSF 301
Score = 68 (29.0 bits), Expect = 2.1e-41, Sum P(5) = 2.1e-41
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 640 DDAELGEETKRKIAIEKERQERLKSLQVQFSSK-SKLMNS--VTLDGDLS 686
DDAE EE + K I K + RLK +Q K ++++S ++D D++
Sbjct: 67 DDAEEDEEDEEKAEISKREKARLKEMQKMKKQKIQQILDSQNASIDADMN 116
Score = 47 (21.6 bits), Expect = 2.1e-41, Sum P(5) = 2.1e-41
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 448 GSDEADVVKDECSTKLEDHSVSPENINDAATD 479
GSDE DV DE + D V P +DA D
Sbjct: 44 GSDEEDVAPDEAP--VSDDEVVPVE-DDAEED 72
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 250 (93.1 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 67/201 (33%), Positives = 104/201 (51%)
Query: 1114 LDYS-GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKD 1172
++Y GK+ L +L + L+F+Q LD+++ +LS G
Sbjct: 1183 IEYDCGKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSH------------HGYQ 1230
Query: 1173 WYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1232
++RLDG T +RQ ++ERFN + +V C ++STR+G +G+NL A+ VI D WNPT
Sbjct: 1231 YFRLDGTTGVEQRQAMMERFNA--DPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPT 1288
Query: 1233 YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKE 1292
D QA R R GQT+ V YRL++ T+EE I ++ K L +D K+
Sbjct: 1289 MDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQ 1348
Query: 1293 EMLHLFEFGDDENPDPLTAVS 1313
+ + D EN + +TAV+
Sbjct: 1349 SD-SIRDLFDGENVE-VTAVA 1367
Score = 212 (79.7 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 53/173 (30%), Positives = 89/173 (51%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
L+ DEA IKN ++ QAL V+ +RR+ LTG+PLQN+LME + ++ F+ S +
Sbjct: 683 LILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSSHDD 742
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F++ F NP+ G + + ++ + L++ L+ F+ R V+K LP KT ++
Sbjct: 743 FKDWFSNPL-TGMMEGNMEFNAPLIGR----LHKVLRPFILRRLKKEVEKQLPEKTEHIV 797
Query: 997 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 1049
LS QR LY F+ T + + + + Q L + NHP + +
Sbjct: 798 NCSLSKRQRYLYDDFMSRRS-TKENLKSGNMMSVLNIVMQ-LRKCCNHPNLFE 848
Score = 137 (53.3 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 46/137 (33%), Positives = 70/137 (51%)
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
+P I +L+ +Q+VG+ +M V +K L ILA MGLGKT Q I+ L
Sbjct: 550 VPFLIRGQLREYQMVGLDWM----------VTLYEKNLNGILADEMGLGKTIQTISLLAH 599
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 835
S ++ LIV P +V+ NW+ EF KW P+ LK L F +++R AE W
Sbjct: 600 MACSESIW-GPHLIVVPTSVILNWEMEFKKWCPA-LKILTYF---GTAKER-AEKRKGWM 653
Query: 836 AKGGVFLIGYTAFRNLS 852
K F + T+++ ++
Sbjct: 654 -KPNCFHVCITSYKTVT 669
Score = 39 (18.8 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 1098 QKDWWNDLLHEHTYKELDYSGKMVLLLDI---LTMCSN 1132
Q+ ++D + + KE SG M+ +L+I L C N
Sbjct: 805 QRYLYDDFMSRRSTKENLKSGNMMSVLNIVMQLRKCCN 842
Score = 39 (18.8 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 1098 QKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFY 1153
+++ W+ L++ +LD S ++L N S F QS LD I+FY
Sbjct: 1469 KREEWDKNLNDTAVIDLDDSDSLLL---------NDPSTSADFYQSSSLLDEIKFY 1515
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 271 (100.5 bits), Expect = 3.3e-41, Sum P(4) = 3.3e-41
Identities = 77/215 (35%), Positives = 117/215 (54%)
Query: 1136 KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195
++L+F Q LD++E L K P + RLDG + +RQK+V +FNE
Sbjct: 1648 RALIFCQLKDMLDMVENDLFKKYMPSVT---------YMRLDGSIDPRDRQKVVRKFNE- 1697
Query: 1196 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRL 1255
+ + C L++T+ G LG+NL A+ VI V+ WNP DLQA+ RA R GQ K V YR+
Sbjct: 1698 -DPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRI 1756
Query: 1256 MAHGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFGDDENPDPLTAV-S 1313
+ GT+EEKI Q K +A+ VV++Q ++ ++L LF+ PD +T+ +
Sbjct: 1757 ITKGTLEEKIMGLQKFKMNIASTVVNQQNSGLASMDTHQLLDLFD------PDNVTSQDN 1810
Query: 1314 KENGQGSSQNTNCALKHKLPLSHE-GCSDKLMESL 1347
+E G SQ A K +++E G + K E+L
Sbjct: 1811 EEKNNGDSQ----AAKGMEDIANETGLTGKAKEAL 1841
Score = 247 (92.0 bits), Expect = 3.3e-41, Sum P(4) = 3.3e-41
Identities = 53/175 (30%), Positives = 98/175 (56%)
Query: 878 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 937
V DE H+IKN+++ +A+K++ R+ LTG+P+QNN++E + + DF+ GFLG+ F
Sbjct: 1406 VLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMF 1465
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 997
+ RF PI +++ ++S++ + L++Q+ F+ R V DLPPK +
Sbjct: 1466 QERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLSDLPPKIIQDYY 1525
Query: 998 VKLSPLQRRLYKRFLDLHGFTNDR-VSNEKI---RKSFFAGYQALAQIWNHPGIL 1048
+L LQ++LY F ++ + N +I ++ F Q + ++ NHP ++
Sbjct: 1526 CELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALV 1580
Score = 81 (33.6 bits), Expect = 3.3e-41, Sum P(4) = 3.3e-41
Identities = 30/104 (28%), Positives = 47/104 (45%)
Query: 715 RIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL- 773
++P +I A L+ +Q G+ W + + K L IL MGLGKT Q I +
Sbjct: 1263 KLPIAIKATLRKYQQDGVN--W---LAFLNKYH-----LHGILCDDMGLGKTLQTICIIA 1312
Query: 774 ---------YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
Y RSV +LI+ P ++ +W+ EF ++ P
Sbjct: 1313 SDQYLRKEDYEKTRSVESRALPSLIICPPSLTGHWENEFDQYAP 1356
Score = 45 (20.9 bits), Expect = 3.3e-41, Sum P(4) = 3.3e-41
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 81 VKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDEL 122
VKL++E++ +L +A + L ED W+ L+E+
Sbjct: 100 VKLEHEMKIKLEEATQNNQLNLLQEDHHLSSLSDWK--LNEI 139
Score = 45 (20.9 bits), Expect = 3.3e-41, Sum P(4) = 3.3e-41
Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 639 LDDAELGEETKRKIAIEKERQE-RLKSLQVQ--FSSKSKL-MNSVTLDGDLSAGASIE-- 692
LD+A++ E + KI +E+ Q +L LQ SS S +N + G + +S+
Sbjct: 95 LDNAQVKLEHEMKIKLEEATQNNQLNLLQEDHHLSSLSDWKLNEILKSGKVLLASSMNDY 154
Query: 693 -VLGDAITGYIVNVVRE-KGEEAVRIPSSISAKLKAHQ 728
VLG A N+ ++ K ++ + S ++A KA++
Sbjct: 155 NVLGKADD----NIRKQAKTDDIKQETSMLNASDKANE 188
Score = 42 (19.8 bits), Expect = 3.6e-16, Sum P(4) = 3.6e-16
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 951 TNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 983
T TSE VK+ N IL + + R+D ++
Sbjct: 474 TPITSEFVKLNNSTIEILVTTIWSLLARLDDDI 506
Score = 41 (19.5 bits), Expect = 4.4e-37, Sum P(4) = 4.4e-37
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 703 VNVVREKGEEAVRIPSSISAKLKAHQVV-GIRFMWENIIQ 741
+ + + E + I S++ L+ H++V G+ + ++ I +
Sbjct: 257 LEITEQADESKLMIESTVRPLLEQHEIVAGLVWQFQGIYE 296
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 249 (92.7 bits), Expect = 4.3e-41, Sum P(4) = 4.3e-41
Identities = 69/200 (34%), Positives = 99/200 (49%)
Query: 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 1177
GK+ + +L G + L+F+Q LD++E +L+ G + RLD
Sbjct: 1658 GKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNY------------HGHIYLRLD 1705
Query: 1178 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQA 1237
G T +RQ L+ERFN +KR+ C ++STR+G +GINL A+ VI D WNPT D QA
Sbjct: 1706 GSTRVEQRQILMERFNG--DKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQA 1763
Query: 1238 IYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLH- 1296
R R GQT+ V YRL++ T+E I K+ K L+ ++ T K +
Sbjct: 1764 QDRCHRIGQTRDVHIYRLVSERTIEVNILKKANQKRMLSDMAIEGGNFTTTYFKSSTIKD 1823
Query: 1297 LFEFGDDENPDPLTAVSKEN 1316
LF E D + EN
Sbjct: 1824 LFTMEQSEQ-DESSQEKSEN 1842
Score = 197 (74.4 bits), Expect = 4.3e-41, Sum P(4) = 4.3e-41
Identities = 53/173 (30%), Positives = 84/173 (48%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
L+ DEA IKN ++ Q L +RR+ LTG+PLQN+LME + ++ F+ S E
Sbjct: 1039 LILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHRE 1098
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F+ F NP+ N + I L++ ++ F+ R V+K +P K VI
Sbjct: 1099 FKEWFSNPMTGMIEGNMEYNETLITR-----LHKVIRPFLLRRLKKEVEKQMPKKYEHVI 1153
Query: 997 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 1049
T +LS QR LY+ F+ T + + + S L ++ NHP + +
Sbjct: 1154 TCRLSNRQRYLYEDFMS-RAKTRETLQTGNLL-SVINVLMQLRKVCNHPNMFE 1204
Score = 140 (54.3 bits), Expect = 4.3e-41, Sum P(4) = 4.3e-41
Identities = 56/218 (25%), Positives = 98/218 (44%)
Query: 640 DDAELGE-ETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
D+ +L +T + + E+++ LKSL + S S + G ++G ++L DA
Sbjct: 827 DEEDLSTVKTDTDMEEQDEQEDGLKSLMADADATSGAAGSGSTAG--ASGNKDDMLNDAA 884
Query: 699 TGYIVNVVREKGEE------AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKG 752
+ ++ KG +P + L+ +Q +G+ ++ V ++
Sbjct: 885 A--LAESLQPKGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWL----------VTMNERK 932
Query: 753 LGCILAHTMGLGKTFQVIAFL-YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
L ILA MGLGKT Q IA L + A N G LIV P +V+ NW+ EF KW P
Sbjct: 933 LNGILADEMGLGKTIQTIALLAHLACAKGNWGPH--LIVVPSSVMLNWEMEFKKWCPG-- 988
Query: 812 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFR 849
++ ++R+ + + W K F + T+++
Sbjct: 989 --FKILTYYGSQKERKLKRVG-W-TKPNAFHVCITSYK 1022
Score = 68 (29.0 bits), Expect = 4.3e-41, Sum P(4) = 4.3e-41
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 167 VGSQVTSEMRESIAGAEDFLQTERP-VRRRHGKLLEEGASGFLQKKIANDG--SENGGKE 223
V +VT+ +ES +DFL P KL++E S ++ + +D SE KE
Sbjct: 683 VKEEVTALAKESEMDFDDFLNDLPPGYLENRDKLMKEEQSSAIKTETPDDSDDSEFEAKE 742
Query: 224 VSDINWNSVNK 234
SD + N+++K
Sbjct: 743 ASDDDENTISK 753
Score = 42 (19.8 bits), Expect = 2.1e-38, Sum P(4) = 2.1e-38
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 101 EAAVEDEMTVYKEQWEAA--------LDELETESAHLLEQL 133
EA+ +DE T+ K++ EA +DELE ++ +EQL
Sbjct: 742 EASDDDENTISKQE-EAEQEIDHKKEIDELEADNDLSVEQL 781
Score = 41 (19.5 bits), Expect = 2.6e-38, Sum P(4) = 2.6e-38
Identities = 19/86 (22%), Positives = 33/86 (38%)
Query: 296 IANEKELALSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQKEIGS-VDWTIED 354
+ N +L + EEQ K + DD++ ISKQ+E +D E
Sbjct: 710 LENRDKL-MKEEQSSAI-KTETPDDSDDSEFEAKEASDDDENTISKQEEAEQEIDHKKEI 767
Query: 355 SAVETRPLVDASKSLSNKKTDDGDMP 380
+E + + L+ K++ P
Sbjct: 768 DELEADNDLSVEQLLAKYKSEQPPSP 793
Score = 40 (19.1 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1158 PRPGKQGKLWKKGKDWYRLDGRTES 1182
P P K K + GK ++ L T S
Sbjct: 1394 PTPAKVAKTMQDGKPFFYLTPATNS 1418
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 293 (108.2 bits), Expect = 5.4e-41, Sum P(3) = 5.4e-41
Identities = 72/188 (38%), Positives = 104/188 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 444 SGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYC-----------MWR-GFEYCRL 491
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T R++ ++ FN P N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 492 DGNTPHEAREQAIDAFNAP-NSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 550
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV---HRTISKEE 1293
A+ RA R GQ KPV +RL+ T+EE+I +R K L + V+ + ++ + K+E
Sbjct: 551 AMDRAHRIGQRKPVKVFRLITDNTVEERIVERAEMKLRLDSIVIQQGRLIDQQNKLGKDE 610
Query: 1294 MLHLFEFG 1301
ML + G
Sbjct: 611 MLQMIRHG 618
Score = 175 (66.7 bits), Expect = 5.4e-41, Sum P(3) = 5.4e-41
Identities = 56/171 (32%), Positives = 85/171 (49%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ ++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 268 LVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSASD 327
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F TN D K++ +R H + L+ F+ R V+K LPPK I
Sbjct: 328 FDSWFD--------TNCLG-DQKLV-ERLHAV---LRPFLLRRIKAEVEKSLPPKKEVKI 374
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 375 YLGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 422
Score = 113 (44.8 bits), Expect = 5.4e-41, Sum P(3) = 5.4e-41
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W P+
Sbjct: 159 ENGINGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPT 217
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 308 (113.5 bits), Expect = 8.2e-41, Sum P(2) = 8.2e-41
Identities = 71/164 (43%), Positives = 106/164 (64%)
Query: 1113 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKD 1172
++ + GKM L ++ + GDK L+FS S+ LD++E +L + KG
Sbjct: 523 DVKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIR------------KGYS 570
Query: 1173 WYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1232
+ RLDG T ++ RQ LV+ FN +K+V LIST+AG LG+NL SANRV+I D +WNP+
Sbjct: 571 FARLDGSTPTNLRQSLVDDFNASPSKQV--FLISTKAGGLGLNLVSANRVVIFDPNWNPS 628
Query: 1233 YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA 1276
+DLQA R++RYGQ + V +RL++ G++EE +Y RQV K+ L+
Sbjct: 629 HDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYTRQVYKQQLS 672
Score = 218 (81.8 bits), Expect = 8.2e-41, Sum P(2) = 8.2e-41
Identities = 71/266 (26%), Positives = 123/266 (46%)
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT---PVNVLHNWKQEFMKWRPSE 810
G IL MGLGKT Q IAFL + L+ + PV ++ W
Sbjct: 159 GGILGDDMGLGKTIQTIAFLAAVYGKDGDAGESCLLESDKGPVLIICP-SSIIHNWESEF 217
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSF-GKHVKDRNMAREICHA 869
+ F + R +L K +A+G L+ T+F G + N
Sbjct: 218 SRWASFFKVSVYHGSNRDMILEKLKARGVEVLV--TSFDTFRIQGPVLSGINW------- 268
Query: 870 LQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 929
+I++ DEAH +KN ++ +A ++K ++RI LTG+ +QN + E + + ++V G
Sbjct: 269 -----EIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPG 323
Query: 930 FLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFV-QRMDMNVVKKDL 988
LG+ FR+ + P++ GQ + V+I ++R L L+ ++ +R + +
Sbjct: 324 SLGTREHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEETIGHLM 383
Query: 989 PPKTVFVITVKLSPLQRRLYKRFLDL 1014
K V+ ++S LQRR+Y+R + L
Sbjct: 384 MGKEDNVVFCQMSQLQRRVYQRMIQL 409
Score = 139 (54.0 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 45/146 (30%), Positives = 73/146 (50%)
Query: 714 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 773
+ +P+SI+ +L HQ G++FM+ N+ ++ G IL MGLGKT Q IAFL
Sbjct: 129 IHVPASINCRLLEHQREGVKFMY-NLYKNNH---------GGILGDDMGLGKTIQTIAFL 178
Query: 774 YTAM-RSVNLG----LRT----ALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSR 824
+ + G L + LI+ P +++HNW+ EF +W +V + +R
Sbjct: 179 AAVYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSRWASF----FKVSVYHGSNR 234
Query: 825 DRRAELLAKWRAKG-GVFLIGYTAFR 849
D +L K +A+G V + + FR
Sbjct: 235 DM---ILEKLKARGVEVLVTSFDTFR 257
Score = 42 (19.8 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 29/139 (20%), Positives = 52/139 (37%)
Query: 462 KLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPIL----NVIVCKDC 517
KL + +PE A H SL K+ I H ++ NV+ C+
Sbjct: 340 KLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEETIG---HLMMGKEDNVVFCQMS 396
Query: 518 KCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEAC----LSDE 573
+ L+++++ + E C+ + +C S L + C +R + + L +
Sbjct: 397 Q--LQRRVYQRMIQLPEIQCLV--NKDNPCACGS--PLKQSECCRRIVPDGTIWSYLHRD 450
Query: 574 VQASCWQC--CCCSPSLLK 590
C C C P L+K
Sbjct: 451 NHDGCDSCPFCLVLPCLMK 469
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 282 (104.3 bits), Expect = 8.6e-41, Sum P(3) = 8.6e-41
Identities = 77/201 (38%), Positives = 107/201 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 464 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 511
Query: 1177 DGRTESSERQ------------KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII 1224
DG+T ER+ + +E FN P N ++STRAG LGINL SA+ VI+
Sbjct: 512 DGQTPHEEREDKFLEVEFLGQREAIEAFNAP-NSSKFIFMLSTRAGGLGINLASADVVIL 570
Query: 1225 VDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-- 1282
D WNP DLQA+ RA R GQ KPV +RL+ T+EE+I +R K L + V+ +
Sbjct: 571 YDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 630
Query: 1283 --QQVHRTISKEEMLHLFEFG 1301
Q ++KEEML + G
Sbjct: 631 LIDQQSNKLAKEEMLQMIRHG 651
Score = 180 (68.4 bits), Expect = 8.6e-41, Sum P(3) = 8.6e-41
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 287 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 346
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 347 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 394
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 395 YLGLSKMQREWYTKILMKDID-VLNSSGKMDKMR--LLNILMQLRKCCNHP 442
Score = 117 (46.2 bits), Expect = 8.6e-41, Sum P(3) = 8.6e-41
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 178 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 236
Query: 810 ELKPLRVFMLEDVSRDRRAELL 831
LRV +D RA +
Sbjct: 237 ----LRVICFVG-DKDARAAFI 253
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 282 (104.3 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 77/201 (38%), Positives = 107/201 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 485 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 532
Query: 1177 DGRTESSERQ------------KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII 1224
DG+T ER+ + +E FN P N ++STRAG LGINL SA+ VI+
Sbjct: 533 DGQTPHEEREDKFLEVEFLGQREAIEAFNAP-NSSKFIFMLSTRAGGLGINLASADVVIL 591
Query: 1225 VDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-- 1282
D WNP DLQA+ RA R GQ KPV +RL+ T+EE+I +R K L + V+ +
Sbjct: 592 YDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 651
Query: 1283 --QQVHRTISKEEMLHLFEFG 1301
Q ++KEEML + G
Sbjct: 652 LIDQQSNKLAKEEMLQMIRHG 672
Score = 180 (68.4 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 308 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 367
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 368 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 415
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 416 YLGLSKMQREWYTKILMKDID-VLNSSGKMDKMR--LLNILMQLRKCCNHP 463
Score = 117 (46.2 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 199 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 257
Query: 810 ELKPLRVFMLEDVSRDRRAELL 831
LRV +D RA +
Sbjct: 258 ----LRVICFVG-DKDARAAFI 274
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 282 (104.3 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 77/201 (38%), Positives = 108/201 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 535
Query: 1177 DGRTESSERQ------------KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII 1224
DG+T ER+ + +E FN P + R ++STRAG LGINL SA+ VI+
Sbjct: 536 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSRF-IFMLSTRAGGLGINLASADVVIL 594
Query: 1225 VDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-- 1282
D WNP DLQA+ RA R GQ KPV +RL+ T+EE+I +R K L + V+ +
Sbjct: 595 YDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 654
Query: 1283 --QQVHRTISKEEMLHLFEFG 1301
Q ++KEEML + G
Sbjct: 655 LIDQQSNKMAKEEMLQMIRHG 675
Score = 180 (68.4 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 311 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 370
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 371 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 418
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 419 YLGLSKMQREWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 466
Score = 117 (46.2 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 202 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 260
Query: 810 ELKPLRVFMLEDVSRDRRAELL 831
LRV +D RA +
Sbjct: 261 ----LRVICFVG-DKDARAAFI 277
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 282 (104.3 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 77/201 (38%), Positives = 108/201 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 535
Query: 1177 DGRTESSERQ------------KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII 1224
DG+T ER+ + +E FN P + R ++STRAG LGINL SA+ VI+
Sbjct: 536 DGQTPHEERENGFLQIYFRRRREAIEAFNVPNSSRF-IFMLSTRAGGLGINLASADVVIL 594
Query: 1225 VDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-- 1282
D WNP DLQA+ RA R GQ KPV +RL+ T+EE+I +R K L + V+ +
Sbjct: 595 YDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 654
Query: 1283 --QQVHRTISKEEMLHLFEFG 1301
Q ++KEEML + G
Sbjct: 655 LIDQQSNKMAKEEMLQMIRHG 675
Score = 180 (68.4 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 311 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 370
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 371 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 418
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 419 YLGLSKMQREWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 466
Score = 117 (46.2 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 202 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 260
Query: 810 ELKPLRVFMLEDVSRDRRAELL 831
LRV +D RA +
Sbjct: 261 ----LRVICFVG-DKDARAAFI 277
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 282 (104.3 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 77/201 (38%), Positives = 108/201 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 535
Query: 1177 DGRTESSERQ------------KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII 1224
DG+T ER+ + +E FN P + R ++STRAG LGINL SA+ VI+
Sbjct: 536 DGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSRF-IFMLSTRAGGLGINLASADVVIL 594
Query: 1225 VDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-- 1282
D WNP DLQA+ RA R GQ KPV +RL+ T+EE+I +R K L + V+ +
Sbjct: 595 YDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 654
Query: 1283 --QQVHRTISKEEMLHLFEFG 1301
Q ++KEEML + G
Sbjct: 655 LIDQQSNKMAKEEMLQMIRHG 675
Score = 180 (68.4 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 311 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 370
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 371 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 418
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 419 YLGLSKMQREWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 466
Score = 117 (46.2 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 202 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 260
Query: 810 ELKPLRVFMLEDVSRDRRAELL 831
LRV +D RA +
Sbjct: 261 ----LRVICFVG-DKDARAAFI 277
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 277 (102.6 bits), Expect = 1.5e-40, Sum P(3) = 1.5e-40
Identities = 88/311 (28%), Positives = 143/311 (45%)
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
G G ILA MGLGKT Q I L+T ++ N A ++ ++ WR
Sbjct: 318 GEGAILADDMGLGKTLQTITLLWTLLKQ-NPIYEAAPVIKKALIVCPVTL-INNWRREFR 375
Query: 812 KPL---RVFMLEDVSRDRRAELLAKWRAKG-GVFLIGYTAFRNLSFGKHVKDRNMAREIC 867
K L R+ + V D+R L K + ++GY R++ G +AR
Sbjct: 376 KWLGNERIGVF--VFDDKRKRLTDFTMGKAYSIMIVGYEKLRSVQEG-------LARG-- 424
Query: 868 HALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+G DI++ DE H +K + + QA++ + +RI L+G+P+QN+L E++ VD V
Sbjct: 425 ----NGVDIVIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVN 480
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 987
G LGS F F+ PI + +T +D++ R+ L E F+ R +++
Sbjct: 481 PGVLGSFKSFIKEFEGPIVRSRQPEATEKDIEKGEARNEELRELTSQFMLRRTADILADY 540
Query: 988 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 1047
LPPKT +V+ K + Q ++Y+ L F ++E + L ++ N P +
Sbjct: 541 LPPKTEYVLFCKPTNTQAKIYQNVLASPVFQGALGNSESALQLI----TILKKLCNSPSL 596
Query: 1048 LQLTKDKGYPS 1058
L L PS
Sbjct: 597 LSLKDANEKPS 607
Score = 256 (95.2 bits), Expect = 1.5e-40, Sum P(3) = 1.5e-40
Identities = 66/183 (36%), Positives = 100/183 (54%)
Query: 1117 SGKMVLLLDILT-MCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYR 1175
S K+ +L +L + ++ +K ++ S TLDL+ LS L P + R
Sbjct: 630 SAKIRVLDQLLHYLRTSTSEKVVLVSNYTSTLDLLANLLSSLSLP------------FLR 677
Query: 1176 LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1235
LDG T + +RQ LVE FN L+S +AG G+NL A+R+++ D WNP D+
Sbjct: 678 LDGSTPAQKRQSLVEDFNRHPASTCFAFLLSAKAGGTGLNLIGASRLVLFDVDWNPATDI 737
Query: 1236 QAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEML 1295
QA+ R R GQ YR++ G++EEKI++RQVTK GLA V++ + S++E+
Sbjct: 738 QAMARIHRDGQKHHCHIYRILLQGSLEEKIWQRQVTKIGLADSVMEHKDSVAQFSRDELR 797
Query: 1296 HLF 1298
LF
Sbjct: 798 DLF 800
Score = 177 (67.4 bits), Expect = 4.6e-30, Sum P(3) = 4.6e-30
Identities = 51/153 (33%), Positives = 82/153 (53%)
Query: 709 KGEEAVRIP-SSISAK-LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKT 766
KG+ V + I AK L+ HQ G++F++E + +R G G ILA MGLGKT
Sbjct: 278 KGKRIVDVVVDPILAKHLRPHQREGVKFLYE-CVMGMRSFN----GEGAILADDMGLGKT 332
Query: 767 FQVIAFLYTAMRSVNLG-----LRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 821
Q I L+T ++ + ++ ALIV PV +++NW++EF KW +E + VF+ +D
Sbjct: 333 LQTITLLWTLLKQNPIYEAAPVIKKALIVCPVTLINNWRREFRKWLGNER--IGVFVFDD 390
Query: 822 VSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFG 854
R R + +A + ++GY R++ G
Sbjct: 391 -KRKRLTDF-TMGKAYS-IMIVGYEKLRSVQEG 420
Score = 44 (20.5 bits), Expect = 1.5e-40, Sum P(3) = 1.5e-40
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 1289 ISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSH 1336
++ EE F G P SK +G G++ ++ +K L SH
Sbjct: 863 VNMEEQERFFATGG-RGPRASVLTSKNSGSGNTNSSKQKIKESL--SH 907
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 284 (105.0 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 78/201 (38%), Positives = 106/201 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 465 SGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 512
Query: 1177 DGRTESSERQKL------------VERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII 1224
DG+T ER+ L +E FN P N ++STRAG LGINL SA+ VI+
Sbjct: 513 DGQTPHEERENLFLHKHNLFSTEAIEAFNAP-NSSKFIFMLSTRAGGLGINLASADVVIL 571
Query: 1225 VDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-- 1282
D WNP DLQA+ RA R GQ KPV +RL+ T+EE+I +R K L + V+ +
Sbjct: 572 YDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR 631
Query: 1283 --QQVHRTISKEEMLHLFEFG 1301
Q ++KEEML + G
Sbjct: 632 LIDQQSNKLAKEEMLQMIRHG 652
Score = 180 (68.4 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 288 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 347
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 348 FDSWFD--------TKNCLGDQKLV-ERLHAV---LKPFLLRRIKTDVEKSLPPKKEIKI 395
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 396 YLGLSKMQREWYTKILMKDID-VLNSSGKMDKMR--LLNILMQLRKCCNHP 443
Score = 113 (44.8 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N +++ P + LHNW EF +W PS
Sbjct: 179 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNFP-GPHMVLVPKSTLHNWMNEFKRWVPS 237
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 253 (94.1 bits), Expect = 3.0e-40, Sum P(4) = 3.0e-40
Identities = 51/138 (36%), Positives = 84/138 (60%)
Query: 878 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 937
V DE H+IKN + +++A+K++K R+ L+G+P+QNN++E + + DF+ GFLG+ +F
Sbjct: 1482 VLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQF 1541
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 997
RF PI + + S++++ + L+ Q+ F+ R V KDLPPK +
Sbjct: 1542 VQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLL 1601
Query: 998 VKLSPLQRRLYKRFLDLH 1015
+LSPLQ RLY+ F + H
Sbjct: 1602 CELSPLQLRLYEDFSNKH 1619
Score = 238 (88.8 bits), Expect = 3.0e-40, Sum P(4) = 3.0e-40
Identities = 73/228 (32%), Positives = 109/228 (47%)
Query: 1106 LHEHTYKELDYSGKMVLLLDILTMC-------SNMGDKSLVFSQSIPTLDLIEFYLSKLP 1158
L + ++++S K+ L +L C S ++L+F Q LD++E L +
Sbjct: 1679 LSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRH 1738
Query: 1159 RPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHS 1218
P + RLDG +S+RQ +V FN + + L++T G LG+NL
Sbjct: 1739 LPSVT---------YLRLDGSVPASQRQDIVNNFNS--DPSIDVLLLTTMVGGLGLNLTG 1787
Query: 1219 ANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAAR 1278
A+ VI V+ WNP DLQA+ RA R GQ K V YRL+ ++EEKI Q K A
Sbjct: 1788 ADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANT 1847
Query: 1279 VVDRQQVH-RTISKEEMLHLFEFGDDENPDP-LTAVSKENGQGSSQNT 1324
VV + +T+ ++ LF G D+ + +AV G S NT
Sbjct: 1848 VVSAENASLQTMGTSQIFDLFNGGKDKGAESGSSAVQGTASGGMSMNT 1895
Score = 104 (41.7 bits), Expect = 3.0e-40, Sum P(4) = 3.0e-40
Identities = 36/125 (28%), Positives = 61/125 (48%)
Query: 715 RIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL- 773
++P IS +L+ +Q GI ++W + K L IL MGLGKT Q I L
Sbjct: 1342 KVPVPISVELRCYQQAGINWLW-----FLNKYN-----LHGILCDDMGLGKTLQTICILA 1391
Query: 774 --YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW--RPSELKPLRVFMLEDVSRDR-RA 828
+ ++ NL +L++ P + +W E K+ + S L+PL + V R++ R+
Sbjct: 1392 GDHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFP-VGREKLRS 1450
Query: 829 ELLAK 833
++ K
Sbjct: 1451 DIGTK 1455
Score = 41 (19.5 bits), Expect = 3.0e-40, Sum P(4) = 3.0e-40
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 160 WKRRAHWVGSQVTSEMRESIAGA-EDFLQTERPVRRRHGKLLEEGA 204
W+ R H + + + + GA + LQT + H + LE+ A
Sbjct: 342 WEVR-HGAATALRELINQHAQGAGKAVLQTREQMDEAHSRWLEDAA 386
Score = 39 (18.8 bits), Expect = 4.8e-40, Sum P(4) = 4.8e-40
Identities = 17/69 (24%), Positives = 28/69 (40%)
Query: 109 TVYKEQWEAALDELETESA-HLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWV 167
++ K W+ LD+ E SA + L A + LP+ R +E W +H
Sbjct: 516 SIVKMLWDLLLDQDELTSACNSFMGLLAAILCLPNAARWVEMDAMAILVPPLWPFLSHST 575
Query: 168 GSQVTSEMR 176
S S ++
Sbjct: 576 SSVRRSTLK 584
Score = 37 (18.1 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 1052 KDKGYPSRXXXXXXXXXXNMDYNVVIGEKP 1081
KDKG S M N +I P
Sbjct: 1872 KDKGAESGSSAVQGTASGGMSMNTIIENLP 1901
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 276 (102.2 bits), Expect = 3.2e-40, Sum P(3) = 3.2e-40
Identities = 73/197 (37%), Positives = 111/197 (56%)
Query: 1110 TYKELDY-SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1168
T + L Y SGKMV+L +L G + L+FSQ LD++E Y +++
Sbjct: 481 TDEHLVYNSGKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYC-----------VFR 529
Query: 1169 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1228
+ K + R+DG T +R ++ +N+P +++ L++TRAG LGINL +A+ VI+ D
Sbjct: 530 EYK-YSRIDGGTAHEDRIAAIDEYNKPGSEKF-VFLLTTRAGGLGINLTTADIVILFDSD 587
Query: 1229 WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVD--RQQV- 1285
WNP DLQA+ RA R GQTK V+ YR + T+EEK+ +R K L V+ R QV
Sbjct: 588 WNPQADLQAMDRAHRIGQTKQVYVYRFLVDNTIEEKVLERAAQKLHLDRLVIQQGRAQVA 647
Query: 1286 -HRTISKEEMLHLFEFG 1301
+K+E+L + + G
Sbjct: 648 AKAAANKDELLSMIQHG 664
Score = 160 (61.4 bits), Expect = 3.2e-40, Sum P(3) = 3.2e-40
Identities = 42/150 (28%), Positives = 76/150 (50%)
Query: 864 REICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 923
RE H + + ++ DEAH IKN + Q ++ + R+ +TG+PLQNN+ E + ++
Sbjct: 298 REKSHLKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELWALL 357
Query: 924 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 983
+F+ G S F F GQ +++ ++ Q L+ L+ F+ R
Sbjct: 358 NFLLPDVFGDSEAFDQWFSG---EGQDSDT------VVQQ----LHRVLRPFLLRRVKAD 404
Query: 984 VKKDLPPKTVFVITVKLSPLQRRLYKRFLD 1013
V+K L PK + +K++ +QR Y++ L+
Sbjct: 405 VEKSLLPKKEVNLYLKMTEMQRTWYQKILE 434
Score = 140 (54.3 bits), Expect = 3.2e-40, Sum P(3) = 3.2e-40
Identities = 43/144 (29%), Positives = 76/144 (52%)
Query: 717 PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 776
P+ I ++ +Q+ G+ ++ + + G+ ILA MGLGKT Q I+FL
Sbjct: 179 PAFIQGTMRDYQIAGLNWL----------ISLHENGISGILADEMGLGKTLQTISFL-GY 227
Query: 777 MRSVNLGLRTA-LIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 835
+R + +G+ L++ P + L NWK+EF KW P + V +L+ +++ RA L+A+ R
Sbjct: 228 LRHI-MGITGPHLVIVPKSTLDNWKREFGKWTPE----VNVLVLQG-AKEERAALIAE-R 280
Query: 836 AKGGVFLIGYTAFRNLSFGK-HVK 858
F + T++ + K H+K
Sbjct: 281 LVDESFDVCITSYEMILREKSHLK 304
Score = 38 (18.4 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 302 LALSEEQRKKFRKVKEED-DA 321
L ++E QR ++K+ E+D DA
Sbjct: 419 LKMTEMQRTWYQKILEKDIDA 439
>UNIPROTKB|F1NCD0 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 EMBL:AADN02013166
IPI:IPI00572933 Ensembl:ENSGALT00000006172 OMA:DYKEFVW
Uniprot:F1NCD0
Length = 560
Score = 286 (105.7 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 77/240 (32%), Positives = 119/240 (49%)
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 813
G ILA MGLGKT Q+IAFL + M L +R L++ P ++ +W EF +W P
Sbjct: 101 GGILADDMGLGKTIQIIAFL-SGMFDSEL-IRHVLLIMPTTLVSSWLAEFARWTPG---- 154
Query: 814 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
LRV S+ R L K + K G+ + Y N + +A CH
Sbjct: 155 LRVKEFHGTSKTERTRNLEKIQRKNGIVITSYQMLIN-------NWKQLAS--CHGQDFV 205
Query: 874 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLG 932
D ++ DEAH IK TT+ + + + R+ LTG+PLQNNL E + + DF +G LG
Sbjct: 206 WDYIILDEAHKIKCPSNKTTKCVYAIPAKHRLLLTGTPLQNNLQEMWSLFDFACQGSLLG 265
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 992
++ FR ++NPI + ++T + + + S L +K + R + +KK+ K+
Sbjct: 266 TAKTFRMEYENPITRAREKDATVGEKALGLKISENLMTIIKPYFLRRTKDDIKKNHAEKS 325
Score = 205 (77.2 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 57/143 (39%), Positives = 79/143 (55%)
Query: 1104 DLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQ 1163
D L + T + SGKM+ L+ +L G ++LVFSQS LD+IE LS +Q
Sbjct: 434 DHLSDETL--IQESGKMLFLVGLLGRLREEGHRTLVFSQSRKMLDIIERVLSS-----RQ 486
Query: 1164 GKLWKKGKDWYRLDGR-TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1222
K+ R+DG T +ER+K + F NK L++T+ G +GI L +ANRV
Sbjct: 487 FKIM-------RIDGTVTHLTEREKRINAFQS--NKDYSVFLLTTQVGGVGITLTAANRV 537
Query: 1223 IIVDGSWNPTYDLQAIYRAWRYG 1245
+I D SWNP D QA+ RA+R G
Sbjct: 538 VIFDPSWNPATDAQAVDRAYRIG 560
Score = 152 (58.6 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 46/129 (35%), Positives = 63/129 (48%)
Query: 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN 781
AKL HQ G+ F++ R + G G G ILA MGLGKT Q+IAFL + M
Sbjct: 78 AKLFQHQREGVAFLY-------RLHREGRPG-G-ILADDMGLGKTIQIIAFL-SGMFDSE 127
Query: 782 LGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVF 841
L +R L++ P ++ +W EF +W P LRV S+ R L K + K G+
Sbjct: 128 L-IRHVLLIMPTTLVSSWLAEFARWTPG----LRVKEFHGTSKTERTRNLEKIQRKNGIV 182
Query: 842 LIGYTAFRN 850
+ Y N
Sbjct: 183 ITSYQMLIN 191
Score = 65 (27.9 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 984 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNE-KIRKSFFAGYQALAQIW 1042
V L K FV+ V L+P+Q ++Y+ FL L D V +S A L ++
Sbjct: 340 VMPSLTRKNDFVVWVYLAPVQEKIYRNFLCL-----DHVKEVLTTTRSPLAELTVLKKLC 394
Query: 1043 NHPGIL 1048
+HP +L
Sbjct: 395 DHPRLL 400
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 242 (90.2 bits), Expect = 6.6e-40, Sum P(3) = 6.6e-40
Identities = 65/177 (36%), Positives = 94/177 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
+GK LL IL G + L+F Q ++++E +L +L +G + RL
Sbjct: 855 AGKFELLDRILPKFKATGHRVLMFFQMTQIMNIMEDFL----------RL--RGMKYLRL 902
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T+S +R L++ FN P + C L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 903 DGSTKSDDRSDLLKLFNAP-DSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQ 961
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEE 1293
A RA R GQ V RL+ ++EEKI +R K + +V+ + + EE
Sbjct: 962 AQDRAHRIGQKNEVRILRLITSNSVEEKILERAQFKLDMDGKVIQAGKFDNKSTNEE 1018
Score = 203 (76.5 bits), Expect = 6.6e-40, Sum P(3) = 6.6e-40
Identities = 58/188 (30%), Positives = 92/188 (48%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQR-RIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KNT++ + L Q R R+ LTG+PLQNNL E + +++FV S
Sbjct: 661 MIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQNNLPELWALLNFVLPNIFKSVK 720
Query: 936 EFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 993
F F P N GQ +E+ +++ R L++ L+ F+ R V+KDLP K
Sbjct: 721 SFDEWFNTPFANTGGQDRMDLTEEEQLLVIRR--LHKVLRPFLLRRLKKDVEKDLPDKQE 778
Query: 994 FVITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLT 1051
VI + S LQ +L K+ L H +D + + L ++ NHP + +
Sbjct: 779 RVIKCRFSALQAKLNKQ-LATHNKMVVSDGKGGKVGMRGLSNMLMQLRKLCNHPFVFEQV 837
Query: 1052 KDKGYPSR 1059
+D+ P R
Sbjct: 838 EDQVNPGR 845
Score = 133 (51.9 bits), Expect = 6.6e-40, Sum P(3) = 6.6e-40
Identities = 43/130 (33%), Positives = 62/130 (47%)
Query: 682 DGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSS-ISAKLKAHQVVGIRFMWENII 740
D D+++G+ E G Y R K EE PS + LK +Q+ G+++M
Sbjct: 495 DEDIASGSDEEGEGRRKIDYYAVAHRIK-EEITEQPSILVGGTLKEYQMKGLQWM----- 548
Query: 741 QSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL-YTAMRSVNLGLRTALIVTPVNVLHNW 799
+ + L ILA MGLGKT Q I+ + + R N G L++ P++ L NW
Sbjct: 549 -----ISLYNNNLNGILADEMGLGKTIQTISLITHIIERKRNNG--PFLVIVPLSTLTNW 601
Query: 800 KQEFMKWRPS 809
EF KW PS
Sbjct: 602 NLEFEKWAPS 611
>WB|WBGene00000803 [details] [associations]
symbol:csb-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0004427 "inorganic
diphosphatase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009650
GeneTree:ENSGT00590000083118 KO:K10841 EMBL:Z81089 PIR:T22595
RefSeq:NP_510607.2 ProteinModelPortal:Q93781 SMR:Q93781
EnsemblMetazoa:F53H4.1 GeneID:181674 KEGG:cel:CELE_F53H4.1
UCSC:F53H4.1 CTD:181674 WormBase:F53H4.1 HOGENOM:HOG000020742
InParanoid:Q93781 OMA:GDICNHP NextBio:914906 Uniprot:Q93781
Length = 957
Score = 286 (105.7 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 99/319 (31%), Positives = 143/319 (44%)
Query: 747 KSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-----GLRTALIVTPVNVLHNWKQ 801
K D G ILA MGLGKT Q + FL + + GL TALIV V+++ W +
Sbjct: 207 KKTDHRSGGILADEMGLGKTIQSVVFLRSIQETARTHYKTTGLDTALIVCHVSIIAQWIK 266
Query: 802 EFMKWRPSELKPLRVFML---------EDV--SRDRRAELLAKWRAKGGVFLIGYTAFRN 850
E +W P RVF+L ED S R+ + K G + L Y+ F
Sbjct: 267 ELNQWFPKA----RVFLLHSHCSTGRQEDYVGSIFRKLQRRRKEYPDGAIILTTYSLFTK 322
Query: 851 LSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGS 910
L K + + H Q +++ DE H I+N + A++++ +R LTG+
Sbjct: 323 LK--KPI--------VKHLWQ----VVILDEGHYIRNENTKCSIAMRKLMTTQRFILTGT 368
Query: 911 PLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYE 970
P QN L E++ +VDFV G L S F F + I G + N + E + L+
Sbjct: 369 PFQNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIINAGANLNCSPEAAAKAYECLVALHI 428
Query: 971 QLKGFVQRMDMNVVKK--DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIR 1028
+K + R K+ LP K V++ +LS QRRLY + + H N+ + R
Sbjct: 429 AVKPLILRRLQEDHKEVLQLPEKQEIVLSCELSKRQRRLYMEYGNSHQ-VNEIIER---R 484
Query: 1029 KSFFAGYQALAQIWNHPGI 1047
F G L I NHPGI
Sbjct: 485 LKAFVGINHLTNICNHPGI 503
Score = 243 (90.6 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 52/133 (39%), Positives = 82/133 (61%)
Query: 1166 LWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIV 1225
L +KG L G ++ R K++++F + ++ +K L++TRAG LG+NL AN+VII
Sbjct: 558 LAEKGIKCVSLTGADSAAARPKIIKKFEDDVS--IKVFLMTTRAGGLGLNLTCANKVIIF 615
Query: 1226 DGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV 1285
D WNP D QA R +R GQT V YRL+++GT+E+ + +QV KE LAAR++ ++
Sbjct: 616 DPDWNPQADNQAKNRIYRMGQTNDVAIYRLVSNGTIEDLKFFKQVQKENLAARLLHNAEI 675
Query: 1286 HRTISKEEMLHLF 1298
+ + + LF
Sbjct: 676 DQFVPNNTLADLF 688
Score = 38 (18.4 bits), Expect = 9.3e-14, Sum P(3) = 9.3e-14
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 794 NVLHNWKQEFMKW 806
N LH ++QE ++W
Sbjct: 192 NKLHKFQQEGVEW 204
Score = 37 (18.1 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 111 YKEQWEAALDE 121
+ E+WE LDE
Sbjct: 51 FDEKWEPELDE 61
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 272 (100.8 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 77/206 (37%), Positives = 108/206 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ G ++ RL
Sbjct: 488 SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------MWR-GYEYCRL 535
Query: 1177 DGRTESSERQKL-----------------VERFNEPLNKRVKCTLISTRAGSLGINLHSA 1219
DG+T ER+++ +E FN P N ++STRAG LGINL SA
Sbjct: 536 DGQTPHEEREEILKDFKIIFHEYQGSNEAIEAFNIP-NSSKFIFMLSTRAGGLGINLASA 594
Query: 1220 NRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARV 1279
+ VI+ D WNP DLQA+ RA R GQ KPV +RL+ T+EE+I +R K L + V
Sbjct: 595 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 654
Query: 1280 VDR----QQVHRTISKEEMLHLFEFG 1301
+ + Q ++KEEML + G
Sbjct: 655 IQQGRLIDQQSNKMAKEEMLQMIRHG 680
Score = 179 (68.1 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 55/171 (32%), Positives = 85/171 (49%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ ++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 311 LVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAED 370
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F T + D K++ +R H + LK F+ R V+K LPPK I
Sbjct: 371 FDSWFD--------TKNCLGDQKLV-ERLHTV---LKPFLLRRIKTDVEKSLPPKKEIKI 418
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 419 YLGLSKMQREWYTKILMKDID-VLNSAGKMDKMR--LLNILMQLRKCCNHP 466
Score = 117 (46.2 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q IA L N+ +++ P + LHNW EF +W PS
Sbjct: 202 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP-GPHMVLVPKSTLHNWMNEFKRWVPS 260
Query: 810 ELKPLRVFMLEDVSRDRRAELL 831
LRV +D RA +
Sbjct: 261 ----LRVICFVG-DKDARAAFI 277
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 272 (100.8 bits), Expect = 2.2e-39, Sum P(4) = 2.2e-39
Identities = 67/189 (35%), Positives = 102/189 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKM++L +L G + L+FSQ LD++E Y + + ++ R+
Sbjct: 489 SGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYC------------YFRDFEYCRI 536
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T ER + ++ +N+P N L++TRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 537 DGSTSHEERIEAIDEYNKP-NSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQ 595
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTIS----KE 1292
A+ RA R GQ K V YR + +EEK+ +R K L V+ + +T S K+
Sbjct: 596 AMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQQGTGKKTASLGNSKD 655
Query: 1293 EMLHLFEFG 1301
++L + +FG
Sbjct: 656 DLLDMIQFG 664
Score = 162 (62.1 bits), Expect = 2.2e-39, Sum P(4) = 2.2e-39
Identities = 48/174 (27%), Positives = 84/174 (48%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
+V DEAH IKN ++ +Q ++ + R+ +TG+PLQNNL E + +++F+ G S
Sbjct: 309 IVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSEL 368
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F F+ N++ +D +I+ Q+ H + L F+ R V+K L PK +
Sbjct: 369 FDEWFEQ--------NNSEQDQEIVIQQLHSV---LNPFLLRRVKADVEKSLLPKIETNV 417
Query: 997 TVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 1049
V ++ +Q + YK L+ N V + + L + NHP + +
Sbjct: 418 YVGMTDMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFE 471
Score = 137 (53.3 bits), Expect = 2.2e-39, Sum P(4) = 2.2e-39
Identities = 44/116 (37%), Positives = 65/116 (56%)
Query: 717 PSSI-SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
PS + S KL+ +QV G+ W +I S+ + K L ILA MGLGKT Q I+FL
Sbjct: 176 PSFVKSGKLRDYQVQGLN--W--LI-SLHENK-----LSGILADEMGLGKTLQTISFL-G 224
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELL 831
+R V LI+ P + L NW++EF+KW P+ + V +L +D RA+++
Sbjct: 225 YLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPN----VNVLVLHG-DKDTRADIV 275
Score = 48 (22.0 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 942 QNPIENGQHTNSTSEDVKIM---NQ---RSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 995
Q P N + T +T ED ++ N+ R+ LYE+LK + D+ + +TV
Sbjct: 984 QYPPNNARRTYNTLEDKFLLLAVNKYGLRADKLYEKLKQEIMMSDLFTFDWFIKTRTVHE 1043
Query: 996 ITVKLSPLQRRLYKRF 1011
++ ++ L + + +
Sbjct: 1044 LSKRVHTLLTLIVREY 1059
Score = 44 (20.5 bits), Expect = 2.2e-39, Sum P(4) = 2.2e-39
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 339 ISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLET 393
++ Q+E D S + LVD S SN +DD ++ G + E++ + + T
Sbjct: 1 MTTQQEEQRSDTKNSKSESPSEVLVDTLDSKSNGSSDDDNI-GQSEELSDKEIYT 54
Score = 38 (18.4 bits), Expect = 6.2e-15, Sum P(4) = 6.2e-15
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLH-LFEF 1300
+ T+E+K V K GL A +++ + +E M+ LF F
Sbjct: 994 YNTLEDKFLLLAVNKYGLRA-----DKLYEKLKQEIMMSDLFTF 1032
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 332 (121.9 bits), Expect = 3.7e-39, Sum P(2) = 3.7e-39
Identities = 132/469 (28%), Positives = 218/469 (46%)
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
D+ V DE H +KN ++ + L + R+ LTG+PLQNNL E ++ F+ S
Sbjct: 676 DVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQNNLKELVSLLAFILPNMFDSD 735
Query: 935 HEFRNRFQNPIENGQHT-NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 993
+ + I + T ++ E + QR + FV R N V DLP KT
Sbjct: 736 MDDLD----VIFKAKPTADADIEQALLSKQRISRAKTMMTPFVLRRRKNQVLNDLPKKTQ 791
Query: 994 FVITVKLSPLQRRLYKRFLDLHG---FTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL 1050
+ KLS Q +Y R+ L D N++ + + ++L+ H ++QL
Sbjct: 792 IIEHCKLSENQLEIYNRYAALQKNQQLRRDDKRNKRSKNDEESDGKSLSA--GHV-LMQL 848
Query: 1051 TKDKGYPSRXXXXXXXXXXN-MDYNVVIGEKPRNMNDFLQGKNDDGFFQKDW-WNDL--- 1105
K + M +++ E+ +N N+ Q +D D+ + L
Sbjct: 849 RKAANHALLFRKFYDDEKLKQMAKDIMQEEQYKNANE--QYIYEDMEVMSDFELHRLCRS 906
Query: 1106 ---LHEHTYKELDY--SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRP 1160
L +T K+ + SGK+ +L ++L G + L+FSQ LD++E L L
Sbjct: 907 FPTLQSYTLKDDPWMDSGKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQVLDTL--- 963
Query: 1161 GKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSAN 1220
K+ + RLDG T+ RQ ++++F++ + V L+ST+AG GINL AN
Sbjct: 964 ----KI-----SYVRLDGSTQVEVRQDIIDQFHK--EEDVTVFLLSTKAGGFGINLACAN 1012
Query: 1221 RVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK----EGLA 1276
VI+ D S+NP DLQA RA R GQ + V RL+ T+EE I K TK L+
Sbjct: 1013 VVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLS 1072
Query: 1277 ARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTN 1325
+ DR+++ + ++ML G++ P+ +T ++ +G+ ++N
Sbjct: 1073 SDGKDREEIGERLV-QDMLDEENNGNNTKPE-ITG-NESDGEFKVSSSN 1118
Score = 183 (69.5 bits), Expect = 3.7e-39, Sum P(2) = 3.7e-39
Identities = 65/214 (30%), Positives = 109/214 (50%)
Query: 717 PSSISA--KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLY 774
P ++++ +LK++Q+VG+ W +++ +K+ SG ILA MGLGKT QV+AF
Sbjct: 541 PKTLASDVQLKSYQLVGVN--WLHLLYQ-QKL-SG------ILADEMGLGKTCQVVAFFA 590
Query: 775 TAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRR--AELLA 832
+ + G L+V P + L NW +E ++ PS LRV ++R E +
Sbjct: 591 LLLEQGHHGPH--LVVVPSSTLENWLRELARFCPS----LRVEPYYGSQQERANIREAIE 644
Query: 833 KWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADT 892
+ K + + Y N + +DR+ + H Q+ D+ V DE H +KN ++
Sbjct: 645 ENEIKYDILVTTYQLATN-----NKEDRSFLK---H--QNF-DVCVYDEGHYLKNRMSER 693
Query: 893 TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV 926
+ L + R+ LTG+PLQNNL E ++ F+
Sbjct: 694 YKHLMNLNANFRLLLTGTPLQNNLKELVSLLAFI 727
Score = 46 (21.3 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 342 QKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVK 401
Q+E ++ IE++ ++ LV + +N K D + N +V + + E L++ +
Sbjct: 633 QQERANIREAIEENEIKYDILVTTYQLATNNKEDRSFLKHQNFDVCVYD-EGHYLKNRMS 691
Query: 402 ER 403
ER
Sbjct: 692 ER 693
>TAIR|locus:2050039 [details] [associations]
symbol:CHR34 "chromatin remodeling 34" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 EMBL:AC006841 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K10875 HOGENOM:HOG000029425 IPI:IPI00546951 PIR:D84601
RefSeq:NP_179740.1 UniGene:At.39568 ProteinModelPortal:Q9SJT3
SMR:Q9SJT3 PRIDE:Q9SJT3 EnsemblPlants:AT2G21450.1 GeneID:816684
KEGG:ath:AT2G21450 TAIR:At2g21450 InParanoid:Q9SJT3 OMA:FVFQYIS
PhylomeDB:Q9SJT3 ProtClustDB:CLSN2913149 ArrayExpress:Q9SJT3
Genevestigator:Q9SJT3 Uniprot:Q9SJT3
Length = 816
Score = 289 (106.8 bits), Expect = 4.1e-39, Sum P(3) = 4.1e-39
Identities = 73/244 (29%), Positives = 127/244 (52%)
Query: 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL 782
+++ HQ G RF+ N+ + D+ GCILAH G GKTF +I+FL + M +++
Sbjct: 264 EMRPHQTEGFRFLCNNL--------AADEPGGCILAHAPGSGKTFLLISFLQSFM-AMDP 314
Query: 783 GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFL 842
R L+V P ++ +WK+EF W ++ L + ++ SR ++ ++L +W + +
Sbjct: 315 QARP-LVVLPKGIIESWKREFTLWEVEKIPLLDFYSVKAESRKQQLKVLGQWIKERSILF 373
Query: 843 IGYTAFRNLSFGKHVKDRNM--AREICHA-LQDGPDILVCDEAHMIKNTRADTTQALKQV 899
+GY F + + D N A E C L + P +L+ DE H +N +L +V
Sbjct: 374 LGYQQFTRI-----ICDDNFEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARV 428
Query: 900 KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG--SSHEFRNRFQNPIE--NGQHTNSTS 955
K +R++ LTG+ QNN+ E + ++D VR FL + E +R + E G+ N +S
Sbjct: 429 KTRRKVVLTGTLFQNNVEEVFNILDLVRPKFLKRPGTREIVSRIMSKAEIPRGKQVNQSS 488
Query: 956 EDVK 959
++
Sbjct: 489 SSIE 492
Score = 230 (86.0 bits), Expect = 4.1e-39, Sum P(3) = 4.1e-39
Identities = 56/155 (36%), Positives = 90/155 (58%)
Query: 1119 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDG 1178
KM L++L +C + G+K LVFSQ I + +E +S + K W+ GK+ + + G
Sbjct: 621 KMKFFLNLLALCESTGEKLLVFSQYIVPIKTLERLMSSM-------KGWRLGKEMFTITG 673
Query: 1179 RTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAI 1238
+ + +R+ +ERFN L +V S +A GI+L A+RV+I+D NP+ QA+
Sbjct: 674 DSSNEQREWSMERFNNSLEAKV--FFGSIKACGEGISLVGASRVLILDVHLNPSVTQQAV 731
Query: 1239 YRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKE 1273
RA+R GQ + V+AY+L+A + EE+ Y+ KE
Sbjct: 732 ARAYRPGQKRKVYAYKLVAADSPEEENYETCTRKE 766
Score = 44 (20.5 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 775 TAMRSVNLGLRTALIVT----PVNVLHNWKQEFMKWRPSELKPLRVFM-LEDVSRD 825
T RS N + +LI N+LH K +F P L V + L + RD
Sbjct: 502 TLQRSTNFSAKASLIKDLREMTRNILHYHKADFSGLLPG-LSEFTVMLNLSSIQRD 556
Score = 39 (18.8 bits), Expect = 4.1e-39, Sum P(3) = 4.1e-39
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 210 KKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKC 244
K D N K++ D + + + K G+V C
Sbjct: 168 KVTVEDSQSNDHKQIEDCDHSFICKDDIGEVCRVC 202
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 261 (96.9 bits), Expect = 4.9e-39, Sum P(2) = 4.9e-39
Identities = 104/404 (25%), Positives = 181/404 (44%)
Query: 670 SSKSKLMNSVTLDGDLS--AGASIEVL-G-DAITGYIVNVVREKGEEAVRIPSSISAKLK 725
+S + L+ V L+ + G S ++L G D ++ ++ + E ++P +I A+L+
Sbjct: 1260 TSFATLVKLVPLEAGIPDPPGLSEKLLEGRDRERKFMSQMLDSRKVEEFKLPVAIKAELR 1319
Query: 726 AHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA--MRSVNLG 783
+Q G+ W + L IL MGLGKT Q I + + MR+ +
Sbjct: 1320 PYQQEGVN--WLAFLNRYN--------LHGILCDDMGLGKTLQTICIVASDHHMRAEDFA 1369
Query: 784 LRT--------ALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR 835
+LI+ P ++ +W+QE ++ P L + ++ R + LA
Sbjct: 1370 KTQRPESRKVPSLIICPPSLSGHWQQEVKQYAPF-LNCV-AYVGPPAERSKLQGSLAD-- 1425
Query: 836 AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQA 895
+ + Y RN D ++ R I + V DE H+IKN +A T A
Sbjct: 1426 --ADIVVTSYDICRN--------DNDVLRPISW------NYCVLDEGHLIKNPKAKVTMA 1469
Query: 896 LKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTS 955
+K++ R+ L+G+P+QNN++E + + DF+ GFLG+ F +RF PI + + S+
Sbjct: 1470 VKRINSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKVFLDRFAKPIATSRFSKSSK 1529
Query: 956 EDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFL--D 1013
E + L++Q+ F+ R V DLPPK + S LQ++L++ F +
Sbjct: 1530 EQ-EAGALAIEALHKQVLPFLLRRLKEEVLNDLPPKIIQNYYCDPSELQKKLFEDFTKKE 1588
Query: 1014 LHGFTNDRVSNEKIRKS-FFAGYQALAQIWNHPGILQLTKDKGY 1056
S+EK K F Q + ++ N P ++ K Y
Sbjct: 1589 QKALQEKMGSSEKADKEHIFQALQYMRRLCNSPALVVKEGHKQY 1632
Score = 259 (96.2 bits), Expect = 4.9e-39, Sum P(2) = 4.9e-39
Identities = 72/184 (39%), Positives = 102/184 (55%)
Query: 1136 KSLVFSQSIPTLDLIEF-YLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1194
++LVF Q LD+++ L KL P Q + RLDG E++ RQ +V RFN
Sbjct: 1687 RALVFCQMKEMLDIVQSEVLQKL-LPSVQ---------FLRLDGAVEATRRQDIVNRFNS 1736
Query: 1195 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYR 1254
+ V L++T G LG+NL A+ VI V+ WNP D+QA+ RA R GQ K V YR
Sbjct: 1737 DPSYDV--LLLTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYR 1794
Query: 1255 LMAHGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFGDD-ENPDPLTAV 1312
L+ GT+EEKI Q K +A+ VV++Q T+ +++L LF G+ EN + T +
Sbjct: 1795 LITRGTLEEKILNLQRFKIDVASTVVNQQNAGLNTMDTDQLLDLFNLGETAENAEKPTEI 1854
Query: 1313 S-KE 1315
KE
Sbjct: 1855 GGKE 1858
Score = 48 (22.0 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 182 AEDFLQTERPVRRRHGKLL--EEGASGFLQKKI 212
AEDF +T+RP R+ L+ SG Q+++
Sbjct: 1365 AEDFAKTQRPESRKVPSLIICPPSLSGHWQQEV 1397
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 281 (104.0 bits), Expect = 5.0e-39, Sum P(4) = 5.0e-39
Identities = 73/189 (38%), Positives = 102/189 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ + RL
Sbjct: 465 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YGYCRL 512
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ERQ + FNEP N ++STRAG LGINL +A+ VII D WNP DLQ
Sbjct: 513 DGQTPHEERQISINAFNEP-NSSKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQ 571
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV----HRTISKE 1292
A+ RA R GQ K V +R + T+EE+I +R K L + V+ + ++ + K+
Sbjct: 572 AMDRAHRIGQKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDPSMNKLGKD 631
Query: 1293 EMLHLFEFG 1301
EML + G
Sbjct: 632 EMLSIIRHG 640
Score = 179 (68.1 bits), Expect = 5.0e-39, Sum P(4) = 5.0e-39
Identities = 56/171 (32%), Positives = 85/171 (49%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ SS +
Sbjct: 288 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSED 347
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F F TN+ D K++ +R H + L+ F+ R V+K L PK I
Sbjct: 348 FDAWFD--------TNNCLGDTKLV-ERLHTV---LRPFLLRRIKADVEKSLLPKKEIKI 395
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
V LS +QR Y + L D+ N +K+R L + NHP
Sbjct: 396 YVGLSKMQREWYTKILMKDID-ILNSAGKMDKMR--LLNVLMQLRKCCNHP 443
Score = 110 (43.8 bits), Expect = 5.0e-39, Sum P(4) = 5.0e-39
Identities = 30/94 (31%), Positives = 48/94 (51%)
Query: 717 PSSI-SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
PS + + KL+ +QV G+ ++ + + G+ ILA MGLGKT Q I+ L
Sbjct: 155 PSYVKTGKLRDYQVRGLNWL----------ISLYENGINGILADEMGLGKTLQTISLLGY 204
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
N+ +++ P + L+NW EF +W PS
Sbjct: 205 MKHYRNIP-GPHMVLVPKSTLYNWMNEFKRWVPS 237
Score = 39 (18.8 bits), Expect = 5.0e-39, Sum P(4) = 5.0e-39
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 214 NDGSENGGKEVSDINWNS 231
+D SENG E SD +S
Sbjct: 27 DDTSENGHDEASDTAMDS 44
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 281 (104.0 bits), Expect = 5.7e-39, Sum P(3) = 5.7e-39
Identities = 72/192 (37%), Positives = 107/192 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKM +L +L G + L+FSQ LD++E Y W+ ++ RL
Sbjct: 430 SGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCH-----------WRN-YNYCRL 477
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T +R + ++ FN N ++STRAG LGINL +A+ VII D WNP DLQ
Sbjct: 478 DGQTPHEDRNRQIQEFNMD-NSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQ 536
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV--HRT--ISKE 1292
A+ RA R GQ K V +RL+ T+EEKI +R K L V+ ++ +R+ ++K+
Sbjct: 537 AMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKD 596
Query: 1293 EMLHLFEFGDDE 1304
EML++ FG ++
Sbjct: 597 EMLNIIRFGANQ 608
Score = 173 (66.0 bits), Expect = 5.7e-39, Sum P(3) = 5.7e-39
Identities = 56/171 (32%), Positives = 84/171 (49%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ L++ K R+ +TG+PLQNNL E + +++F+ SS +
Sbjct: 253 LVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSED 312
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F F +TN+ D ++ + L+ LK F+ R V+K L PK I
Sbjct: 313 FDEWF--------NTNTCLGDDALITR----LHAVLKPFLLRRLKAEVEKRLKPKKEMKI 360
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
V LS +QR Y + L D+ N EK+R L + NHP
Sbjct: 361 FVGLSKMQRDWYTKVLLKDID-VVNGAGKVEKMRLQNIL--MQLRKCTNHP 408
Score = 108 (43.1 bits), Expect = 5.7e-39, Sum P(3) = 5.7e-39
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ G+ ILA MGLGKT Q I+ L N +++ P + L NW EF KW PS
Sbjct: 144 ENGINGILADEMGLGKTLQTISLLGYLKHFKNQA-GPHIVIVPKSTLQNWVNEFKKWCPS 202
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 280 (103.6 bits), Expect = 5.9e-39, Sum P(4) = 5.9e-39
Identities = 84/258 (32%), Positives = 131/258 (50%)
Query: 1070 NMDY-NVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKE----LDYSGKMVLLL 1124
N+D N + G K + +N +Q + + D + E Y E ++ SGKM LL
Sbjct: 576 NIDVLNAMTGSKNQMLNILMQLRK---CCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLD 632
Query: 1125 DILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSE 1184
+L + L+FSQ LD+I+ Y WK + R+DG T E
Sbjct: 633 KLLPRLKKENSRVLLFSQMTRLLDIIDDYCR-----------WKN-YPYLRIDGSTPGDE 680
Query: 1185 RQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY 1244
RQ + +FNEP N + L+STRAG +GINL +A+ VI+ D +NP D+QA+ RA R
Sbjct: 681 RQVRINQFNEP-NSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRI 739
Query: 1245 GQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKE---EMLH-LFEF 1300
GQ K V YR + ++EEKI +R K L + ++ + +++ +KE + LH + F
Sbjct: 740 GQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGKLNLNSAKENNKQELHDILNF 799
Query: 1301 GDDE--NPDPLTAVSKEN 1316
G E ++++S E+
Sbjct: 800 GAPEVYKTQDISSISDED 817
Score = 182 (69.1 bits), Expect = 5.9e-39, Sum P(4) = 5.9e-39
Identities = 48/136 (35%), Positives = 76/136 (55%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ + +++ ++ + R+ +TG+PL NNL E + +++F+ +S E
Sbjct: 446 LVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEE 505
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F N F N + + N SE I+ Q L+ LK F+ R V++ LPPK I
Sbjct: 506 FDNLF-NISKISTNDNKQSE---IITQ----LHTILKPFMLRRLKVEVEQSLPPKREIYI 557
Query: 997 TVKLSPLQRRLYKRFL 1012
V +S LQ++LY L
Sbjct: 558 FVGMSKLQKKLYSDIL 573
Score = 117 (46.2 bits), Expect = 5.9e-39, Sum P(4) = 5.9e-39
Identities = 35/122 (28%), Positives = 65/122 (53%)
Query: 711 EEAVRI--PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQ 768
+EA+ + P +I+ +K +Q+ G+ ++++ + + K + ILA MGLGKT Q
Sbjct: 307 DEAIILKQPMNINGTMKPYQLEGLNWLYQ-----LYRFK-----INGILADEMGLGKTLQ 356
Query: 769 VIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 828
I+ L + N+ + ++I+ P + L NW +E KW P++ F ++D+R
Sbjct: 357 TISLLCYLRFNKNIK-KKSIIICPRSTLDNWYEEIKKW----CTPMKAFKYYG-NKDQRK 410
Query: 829 EL 830
EL
Sbjct: 411 EL 412
Score = 44 (20.5 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 924 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYE-QLKGFVQRMDMN 982
D +EG + + + + +E+G N + + +H+ Y+ + K ++ + N
Sbjct: 72 DITKEGNNMNENMMNRKLNSSVEDGNDNNHDKNVHRNIGNDTHVSYDDKRKSYLDNNEEN 131
Score = 37 (18.1 bits), Expect = 5.9e-39, Sum P(4) = 5.9e-39
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 449 SDEADVVKDECSTKLEDHSVSPENINDAATDNSLHS 484
+D+++ D+ + +D++ E+ N+ DN+ H+
Sbjct: 202 NDDSNNHNDDSNNHNDDNNNHNEDNNNHNDDNNNHN 237
Score = 37 (18.1 bits), Expect = 5.9e-39, Sum P(4) = 5.9e-39
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 172 TSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSE 218
T E +AG + + ++ LL E F+ K AN+ E
Sbjct: 262 TKRYTEKLAGQRLKMNAQMKSSKKGRCLLTEKEEDFMLLKDANEEDE 308
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 280 (103.6 bits), Expect = 5.9e-39, Sum P(4) = 5.9e-39
Identities = 84/258 (32%), Positives = 131/258 (50%)
Query: 1070 NMDY-NVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKE----LDYSGKMVLLL 1124
N+D N + G K + +N +Q + + D + E Y E ++ SGKM LL
Sbjct: 576 NIDVLNAMTGSKNQMLNILMQLRK---CCNHPYLFDGIEEPPYIEGNHLIETSGKMSLLD 632
Query: 1125 DILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSE 1184
+L + L+FSQ LD+I+ Y WK + R+DG T E
Sbjct: 633 KLLPRLKKENSRVLLFSQMTRLLDIIDDYCR-----------WKN-YPYLRIDGSTPGDE 680
Query: 1185 RQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY 1244
RQ + +FNEP N + L+STRAG +GINL +A+ VI+ D +NP D+QA+ RA R
Sbjct: 681 RQVRINQFNEP-NSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRI 739
Query: 1245 GQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKE---EMLH-LFEF 1300
GQ K V YR + ++EEKI +R K L + ++ + +++ +KE + LH + F
Sbjct: 740 GQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGKLNLNSAKENNKQELHDILNF 799
Query: 1301 GDDE--NPDPLTAVSKEN 1316
G E ++++S E+
Sbjct: 800 GAPEVYKTQDISSISDED 817
Score = 182 (69.1 bits), Expect = 5.9e-39, Sum P(4) = 5.9e-39
Identities = 48/136 (35%), Positives = 76/136 (55%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ + +++ ++ + R+ +TG+PL NNL E + +++F+ +S E
Sbjct: 446 LVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEE 505
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F N F N + + N SE I+ Q L+ LK F+ R V++ LPPK I
Sbjct: 506 FDNLF-NISKISTNDNKQSE---IITQ----LHTILKPFMLRRLKVEVEQSLPPKREIYI 557
Query: 997 TVKLSPLQRRLYKRFL 1012
V +S LQ++LY L
Sbjct: 558 FVGMSKLQKKLYSDIL 573
Score = 117 (46.2 bits), Expect = 5.9e-39, Sum P(4) = 5.9e-39
Identities = 35/122 (28%), Positives = 65/122 (53%)
Query: 711 EEAVRI--PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQ 768
+EA+ + P +I+ +K +Q+ G+ ++++ + + K + ILA MGLGKT Q
Sbjct: 307 DEAIILKQPMNINGTMKPYQLEGLNWLYQ-----LYRFK-----INGILADEMGLGKTLQ 356
Query: 769 VIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 828
I+ L + N+ + ++I+ P + L NW +E KW P++ F ++D+R
Sbjct: 357 TISLLCYLRFNKNIK-KKSIIICPRSTLDNWYEEIKKW----CTPMKAFKYYG-NKDQRK 410
Query: 829 EL 830
EL
Sbjct: 411 EL 412
Score = 44 (20.5 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 924 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYE-QLKGFVQRMDMN 982
D +EG + + + + +E+G N + + +H+ Y+ + K ++ + N
Sbjct: 72 DITKEGNNMNENMMNRKLNSSVEDGNDNNHDKNVHRNIGNDTHVSYDDKRKSYLDNNEEN 131
Score = 37 (18.1 bits), Expect = 5.9e-39, Sum P(4) = 5.9e-39
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 449 SDEADVVKDECSTKLEDHSVSPENINDAATDNSLHS 484
+D+++ D+ + +D++ E+ N+ DN+ H+
Sbjct: 202 NDDSNNHNDDSNNHNDDNNNHNEDNNNHNDDNNNHN 237
Score = 37 (18.1 bits), Expect = 5.9e-39, Sum P(4) = 5.9e-39
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 172 TSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSE 218
T E +AG + + ++ LL E F+ K AN+ E
Sbjct: 262 TKRYTEKLAGQRLKMNAQMKSSKKGRCLLTEKEEDFMLLKDANEEDE 308
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 263 (97.6 bits), Expect = 6.6e-39, Sum P(4) = 6.6e-39
Identities = 70/190 (36%), Positives = 103/190 (54%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ LL +L + L+FSQ L+++E +L +G+ G + R+
Sbjct: 585 SGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFL--------EGE----GYQYDRI 632
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQK ++RFN+P+++ L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 633 DGSIKGDLRQKAIDRFNDPVSEHF-VFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQ 691
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT--ISKEEM 1294
A RA R GQ K V YR + H ++EE+I + K L VV T SK+E+
Sbjct: 692 AFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDEL 751
Query: 1295 LHLFEFGDDE 1304
+ FG ++
Sbjct: 752 EDILRFGTED 761
Score = 162 (62.1 bits), Expect = 6.6e-39, Sum P(4) = 6.6e-39
Identities = 42/136 (30%), Positives = 74/136 (54%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH +++ ++ + L + + ++ LTG+PLQNNL E + +++F+ G
Sbjct: 406 LVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQT 465
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F+ F + S E VK R H + E ++R+ +V+K +PPK+ F++
Sbjct: 466 FQAEFTDV--------SKEEQVK----RLHEILEP--HMLRRLKADVLKS-MPPKSEFIV 510
Query: 997 TVKLSPLQRRLYKRFL 1012
V+LS +Q++ YK L
Sbjct: 511 RVELSSMQKKFYKHIL 526
Score = 110 (43.8 bits), Expect = 6.6e-39, Sum P(4) = 6.6e-39
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 748 SGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWR 807
S +G+ ILA MGLGKT Q + FLY+ + + LI P++ L NW++E W
Sbjct: 281 SWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCR-GPFLISVPLSTLTNWERELELWA 339
Query: 808 P 808
P
Sbjct: 340 P 340
Score = 70 (29.7 bits), Expect = 6.6e-39, Sum P(4) = 6.6e-39
Identities = 18/64 (28%), Positives = 26/64 (40%)
Query: 523 KKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCC 582
KK +D + YC C DL+ C SC +++ TC+ + D W C
Sbjct: 28 KKQKFRDEE----YCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGD------WICP 77
Query: 583 CCSP 586
C P
Sbjct: 78 RCIP 81
Score = 54 (24.1 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 858 KDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVK-----CQRRIALTG 909
K + E C DG D+L CD + + R + LK + C R I L G
Sbjct: 29 KQKFRDEEYCKVCSDGGDLLCCDSCPSVYH-RTCLSPPLKSIPKGDWICPRCIPLPG 84
Score = 42 (19.8 bits), Expect = 5.0e-36, Sum P(4) = 5.0e-36
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 116 EAALDELETESAHLLEQLDGAGI--ELPSLYRLIEN-QVPNG 154
E +L+EL+ + +L E+ GI E + R+I + + PNG
Sbjct: 152 EPSLEELDDQDGNLHERFYRYGIKPEWLLVQRVINHSEEPNG 193
>UNIPROTKB|G4MNF9 [details] [associations]
symbol:MGG_06945 "Helicase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:CM001231 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003709685.1 ProteinModelPortal:G4MNF9
EnsemblFungi:MGG_06945T0 GeneID:2685118 KEGG:mgr:MGG_06945
Uniprot:G4MNF9
Length = 1103
Score = 265 (98.3 bits), Expect = 7.3e-39, Sum P(3) = 7.3e-39
Identities = 69/179 (38%), Positives = 101/179 (56%)
Query: 1100 DWWNDL--LHEHTYKELD--YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLS 1155
D W L L + ++D + GK +L D+L GDK LVFS S+ L ++
Sbjct: 549 DKWEQLYKLRDSPLIQMDPEFCGKWRVLKDLLKFWEGNGDKVLVFSHSVKLLQVLR---- 604
Query: 1156 KLPRPGKQGKLWKKGKDWYR-LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGI 1214
L++ Y LDG ERQ++V+ FN + V LIST+AG +G+
Sbjct: 605 ---------ALFQTTHYSYSYLDGSLAIEERQQIVDDFNSDPQQFV--FLISTKAGGVGL 653
Query: 1215 NLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKE 1273
N+ SAN+V+I D WNP++DLQA RA+R GQT+ V +RL++ GT+EE +Y RQ+ K+
Sbjct: 654 NITSANKVVIFDPHWNPSWDLQAQDRAYRIGQTRDVDVFRLVSQGTIEEIVYARQIYKQ 712
Score = 249 (92.7 bits), Expect = 7.3e-39, Sum P(3) = 7.3e-39
Identities = 90/314 (28%), Positives = 146/314 (46%)
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
IP+ I+ L+ +QV G+ FM E + GCIL MGLGKT QV AFL
Sbjct: 186 IPAPIAQYLRDYQVDGVSFMHEAFVYQ----------RGCILGDDMGLGKTVQVAAFLTA 235
Query: 776 A------------MRSVN-LGLR--TALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLE 820
A MR V LG R L+V P +V+ NW+QE +W +++ +
Sbjct: 236 AFGKTGDFRDSKRMRKVKRLGRRYYKVLVVCPSSVMENWRQELARWGWWKVESYHGPGKD 295
Query: 821 DVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 880
DV ++ L V L +R + +E + + D +V D
Sbjct: 296 DVLDTAKSGRLE-------VMLTTPATYR------------LQKERVNTVSW--DAVVVD 334
Query: 881 EAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNR 940
E H IK R++ T+A+ +V RI LTG+ +QN E + ++++ G G+ E++
Sbjct: 335 ECHNIKERRSEITKAMTEVNALCRIGLTGTAIQNKYEELWTLLNWTNPGRFGTFGEWKTS 394
Query: 941 FQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKG--FVQRMDMNVVKKDLPPKTVFVITV 998
P+ GQ N+T +++ + + + L + L F++RM +++ LP K V+
Sbjct: 395 ISRPLTLGQSHNATLQELSMARKTAKKLVQNLLPDYFLRRMK-SLIAHQLPKKRDRVVFC 453
Query: 999 KLSPLQRRLYKRFL 1012
L+ LQ Y+RF+
Sbjct: 454 PLTDLQTTAYERFI 467
Score = 49 (22.3 bits), Expect = 7.3e-39, Sum P(3) = 7.3e-39
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 646 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 696
EE K EK++ + +S + + S KS+ N++T G +A + E + D
Sbjct: 49 EEEAEKERTEKKQAKGRRSAKKKKSIKSEPGNAITNHGRRNARSLAEAIRD 99
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 258 (95.9 bits), Expect = 7.8e-39, Sum P(4) = 7.8e-39
Identities = 81/239 (33%), Positives = 118/239 (49%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK LL IL G + L+F Q ++++E YL + W+ + RL
Sbjct: 735 SGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHY--------RQWR----YLRL 782
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T++ +R KL+ FN+P V L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 783 DGSTKADDRSKLLGVFNDP-TAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQ 841
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV-HRTISKEEML 1295
A RA R GQTK V YRL+ ++EE I R K + +V+ + +++ +E
Sbjct: 842 AQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREA 901
Query: 1296 HLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKH---KLPLSHEGCSDKLMESLLGKH 1351
L ++EN + + E G+ N L +L L + D ES GK+
Sbjct: 902 FLRSLLENENGEE---ENDEKGELDDDELNEILARGDDELRLFKQMTEDLERESPYGKN 957
Score = 195 (73.7 bits), Expect = 7.8e-39, Sum P(4) = 7.8e-39
Identities = 58/180 (32%), Positives = 90/180 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQR-RIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KNT++ T L R R+ LTG+PLQNNL E + +++FV S
Sbjct: 541 MIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIK 600
Query: 936 EFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 993
F F P N GQ +E+ ++ R L++ L+ F+ R V+ +LP K
Sbjct: 601 SFDEWFNTPFANTGGQDKMELTEEESLLVIRR--LHKVLRPFLLRRLKKDVEAELPDKVE 658
Query: 994 FVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ----ALAQIWNHPGILQ 1049
VI ++S LQ++LY + + HG V + K K+ G Q L +I NHP + +
Sbjct: 659 KVIRCQMSGLQQKLYYQ-MKKHGMLY--VEDAKRGKTGIKGLQNTVMQLKKICNHPFVFE 715
Score = 117 (46.2 bits), Expect = 7.8e-39, Sum P(4) = 7.8e-39
Identities = 36/110 (32%), Positives = 52/110 (47%)
Query: 704 NVVREKGEEAVRIPSS-ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 762
NV E PS + KLK +Q+ G+++M + + L ILA MG
Sbjct: 396 NVAHNIREVVTEQPSILVGGKLKEYQLRGLQWM----------ISLYNNHLNGILADEMG 445
Query: 763 LGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 812
LGKT Q I+ L T + L++ P++ L NW EF +W PS +K
Sbjct: 446 LGKTIQTIS-LITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVK 494
Score = 42 (19.8 bits), Expect = 7.8e-39, Sum P(4) = 7.8e-39
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 100 LEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEA 159
L+A E++ Y + + A D T HLL Q D L + ++ ++Q E
Sbjct: 323 LQALKENDEEAYLKLIDQAKD---TRITHLLRQTDHYLDSLAAAVKVQQSQFGESAYDED 379
Query: 160 WKRR 163
RR
Sbjct: 380 MDRR 383
Score = 39 (18.8 bits), Expect = 7.6e-23, Sum P(4) = 7.6e-23
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 812 KPLRVFMLEDVSRDRRAEL 830
K LR F+L + +D AEL
Sbjct: 635 KVLRPFLLRRLKKDVEAEL 653
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 445 (161.7 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 157/550 (28%), Positives = 248/550 (45%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ GL ILA MGLGKT Q IA L G L+ P++ L NW EF K+ P
Sbjct: 238 ENGLNGILADEMGLGKTVQSIALLAFIYEMDTKG--PFLVTAPLSTLDNWMNEFAKFAP- 294
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
+L L+ + ++R A+L ++ GG ++ T++ + ++D ++
Sbjct: 295 DLPVLKYYGTNGY-KERSAKLKNFFKQHGGTGIV-ITSYEII-----LRDTDLI------ 341
Query: 870 LQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG 929
+ L+ DE H +KN + LK++ R+ LTG+PLQNNL E + +++F+
Sbjct: 342 MSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNLAELWSLLNFIMPD 401
Query: 930 FLGSSHEFRNRFQ-NPIENGQHTNSTSEDVKIMN---QRSHI--LYEQLKGFV-QRMDMN 982
F F + + G +NS + + K++N Q++ I L+ LK F+ +R+
Sbjct: 402 IFADFEIFNKWFDFDSLNLGSGSNSEALN-KLINDELQKNLISNLHTILKPFLLRRLKKV 460
Query: 983 VVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIW 1042
V+ LPPK ++I ++ Q + YK L+G + E I+ F + + +
Sbjct: 461 VLANILPPKREYIINCPMTSAQEKFYKA--GLNGKLKKTMFKELIKDFFTLNDEYIGHVS 518
Query: 1043 NHP--GILQLTKDKGYPSRXXXXXXXXXXNMD--Y--NV---VIGEKPRNMNDFLQGKND 1093
N + S MD Y N+ + +K +NM L+ D
Sbjct: 519 NRSIRDFINYKLSGNETSNTDNKINPTLLQMDKLYKKNLQMEISNKKLQNMMMQLRQIID 578
Query: 1094 DGFFQKDWWNDLLH-EHTYKE--LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLI 1150
F ++ LH E E L SGK+ +L ++ + G K L++SQ + LDLI
Sbjct: 579 STFL---FYFPYLHPEDLTLETLLKTSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLI 635
Query: 1151 EFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAG 1210
E + +R+DG + R+ +E+FN +K L+STRA
Sbjct: 636 EDWCDL------------NSFATFRIDGSVNNETRKDQLEKFNSSKDKH-NIFLLSTRAA 682
Query: 1211 SLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQV 1270
LGINL A+ V++ D WNP DLQA+ R R GQ PV YRL T+E I R
Sbjct: 683 GLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVILTRAA 742
Query: 1271 TKEGLAARVV 1280
K L V+
Sbjct: 743 NKRNLERMVI 752
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 236 (88.1 bits), Expect = 3.7e-38, Sum P(4) = 3.7e-38
Identities = 63/177 (35%), Positives = 90/177 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
+GK LL IL G + L+F Q +D++E +L + + RL
Sbjct: 1086 AGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYI------------NIKYLRL 1133
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T+S ER +L+ FN P + C ++STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 1134 DGHTKSDERSELLRLFNAP-DSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1192
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEE 1293
A RA R GQ V RL+ ++EE I +R K + +V+ + + EE
Sbjct: 1193 AQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEE 1249
Score = 205 (77.2 bits), Expect = 3.7e-38, Sum P(4) = 3.7e-38
Identities = 72/252 (28%), Positives = 121/252 (48%)
Query: 814 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
LR + +R+A+ AK RA G F + T F + +K+R + ++
Sbjct: 842 LRTISFKGSPNERKAKQ-AKIRA--GEFDVVLTTFEYI-----IKERALLSKVKWVH--- 890
Query: 874 PDILVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 932
++ DE H +KN ++ + L R+ LTG+PLQNNL E + +++FV
Sbjct: 891 ---MIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFN 947
Query: 933 SSHEFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 990
S F F P N GQ SE+ ++ R L++ L+ F+ R V+K+LP
Sbjct: 948 SVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRR--LHKVLRPFLLRRLKKDVEKELPD 1005
Query: 991 KTVFVITVKLSPLQRRLYKRFLDLHG-FTNDRVSNEKI--RKSFFAGYQALAQIWNHPGI 1047
K V+ K+S LQ+ +Y++ L F D+ +N+K+ + F L +I NHP +
Sbjct: 1006 KVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQ-NNKKMVGLRGFNNQIMQLKKICNHPFV 1064
Query: 1048 LQLTKDKGYPSR 1059
+ +D+ P+R
Sbjct: 1065 FEEVEDQINPTR 1076
Score = 135 (52.6 bits), Expect = 3.7e-38, Sum P(4) = 3.7e-38
Identities = 47/146 (32%), Positives = 68/146 (46%)
Query: 704 NVVREKGEEAVRIPSS-ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 762
NV E+ + PS + LK +Q+ G+++M V + L ILA MG
Sbjct: 746 NVAHRIKEDIKKQPSILVGGTLKDYQIKGLQWM----------VSLFNNHLNGILADEMG 795
Query: 763 LGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDV 822
LGKT Q I+ L N+ L++ P++ L NW EF KW P+ LR +
Sbjct: 796 LGKTIQTISLLTYLYEMKNIR-GPYLVIVPLSTLSNWSSEFAKWAPT----LRTISFKGS 850
Query: 823 SRDRRAELLAKWRAKGGVFLIGYTAF 848
+R+A+ AK RA G F + T F
Sbjct: 851 PNERKAKQ-AKIRA--GEFDVVLTTF 873
Score = 47 (21.6 bits), Expect = 1.2e-18, Sum P(5) = 1.2e-18
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 1274 GLAARVVDRQQVHRTISKEEMLHLFEFGDDENPD 1307
G AR + +S+E+ L FE DDE D
Sbjct: 1348 GRGARERKTATYNDNMSEEQWLRQFEVSDDEKND 1381
Score = 44 (20.5 bits), Expect = 1.2e-18, Sum P(5) = 1.2e-18
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 1104 DLLHEHTYKELDYSGKMV 1121
+++ E YK+LD GK++
Sbjct: 1219 EVILERAYKKLDIDGKVI 1236
Score = 38 (18.4 bits), Expect = 3.7e-38, Sum P(4) = 3.7e-38
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 98 DDLEAAVEDEMTVYKEQWEAALDELETE 125
D L AV+D+ KE ++ + E E
Sbjct: 691 DSLTRAVKDQQKYTKEMIDSHIKEASEE 718
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 246 (91.7 bits), Expect = 9.3e-38, Sum P(3) = 9.3e-38
Identities = 66/177 (37%), Positives = 94/177 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK LL +L G + L+F Q +D++E +L WK K + RL
Sbjct: 819 SGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLR-----------WKDMK-YLRL 866
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T++ ERQ +++ FN P + C L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 867 DGSTKAEERQDMLKVFNAP-DSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 925
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEE 1293
A RA R GQ V RL+ + ++EE I +R K + +V+ + + EE
Sbjct: 926 AQDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGKFDNKSTAEE 982
Score = 199 (75.1 bits), Expect = 9.3e-38, Sum P(3) = 9.3e-38
Identities = 57/178 (32%), Positives = 88/178 (49%)
Query: 877 LVCDEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KN ++ +Q L+ K + R+ LTG+PLQNNL E + +++FV G S
Sbjct: 624 MIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALLNFVLPGIFNSVK 683
Query: 936 EFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 993
F + F P N Q +E+ ++ R L++ L+ F+ R V+KDLP K
Sbjct: 684 SFDDWFNTPFANTGAQEKIELTEEESLLVIRR--LHKVLRPFLLRRLKKDVEKDLPDKVE 741
Query: 994 FVITVKLSPLQRRLYKRFLDLHG-FTNDRVSNEKIR-KSFFAGYQALAQIWNHPGILQ 1049
V+ LS LQ LY++ L + F V K K L +I NHP + +
Sbjct: 742 KVLKCNLSGLQYVLYQQMLKHNALFVGADVGGAKSGIKGLNNKIMQLRKICNHPFVFE 799
Score = 111 (44.1 bits), Expect = 9.3e-38, Sum P(3) = 9.3e-38
Identities = 37/127 (29%), Positives = 61/127 (48%)
Query: 702 IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 761
+ + ++EK E I + KLK +Q+ G+ +M V + L ILA M
Sbjct: 481 VAHRIKEKITEQPTI--LVGGKLKEYQMKGLEWM----------VSLYNNHLNGILADEM 528
Query: 762 GLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 821
GLGKT Q I+ + + + LI+ P++ + NW EF KW PS ++V + +
Sbjct: 529 GLGKTIQSISLVTYLIEKKHEN--KFLIIVPLSTITNWTLEFEKWAPS----IKVIVYKG 582
Query: 822 VSRDRRA 828
+ RR+
Sbjct: 583 SQQQRRS 589
Score = 41 (19.5 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 949 QHTNSTSEDVKIMNQ-RSHILYEQLKGFVQRMDMNVVKK 986
+ + S SE + + RSH L Q+ F Q + KK
Sbjct: 350 EKSTSRSEAKYVRDHYRSHYLVRQINNFHQTTEKEESKK 388
>UNIPROTKB|F1SIZ3 [details] [associations]
symbol:F1SIZ3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00550000074619 EMBL:CU928637
Ensembl:ENSSSCT00000012505 OMA:GETANSK Uniprot:F1SIZ3
Length = 865
Score = 446 (162.1 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 108/269 (40%), Positives = 158/269 (58%)
Query: 1087 FLQGKNDDGFFQK-------DWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLV 1139
FLQG + F ++ +W DLL + L+ S KMVLL ++ +GDK LV
Sbjct: 82 FLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEEVK-LGDKILV 140
Query: 1140 FSQSIPTLDLIEFYLSK--LP-RPGKQGK---LWKKGKDWYRLDGRTESSERQKLVERFN 1193
FSQS+ TL LIE +L K +P PG +G+ W + ++RLDG T + ER++L+ +FN
Sbjct: 141 FSQSLSTLALIEEFLGKREVPCLPGAEGQGVQKWVRNVSYFRLDGSTPAFERERLINQFN 200
Query: 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 1253
+P N L+STRAG LG+NL ANRV++ D SWNP +D QA+ R +RYGQ KP Y
Sbjct: 201 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCHIY 260
Query: 1254 RLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS 1313
RL+A T+E+KIY RQ++K+G++ RVVD +++E+ +L F + E P P +++
Sbjct: 261 RLVADFTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLLHFVEKE-PAPQASLN 319
Query: 1314 KENGQGSSQNTNCALKH-----KLPLSHE 1337
+ + C LK+ K P HE
Sbjct: 320 IKGIKEPVLQLAC-LKYPHLITKEPFEHE 347
Score = 44 (20.5 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 1038 LAQIWNHPGIL 1048
L +IWNHP +L
Sbjct: 17 LWKIWNHPDVL 27
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 257 (95.5 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 66/168 (39%), Positives = 91/168 (54%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK +LL +L G K L+FSQ LD++ Y + +G + RL
Sbjct: 598 SGKFLLLDRMLPELKKRGHKVLMFSQMTMMLDILMDYC------------YLRGFKFSRL 645
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG S+R++ + +FN + V L+STRAG LGINL +A+ VII D WNP DLQ
Sbjct: 646 DGSMSYSDREENMHQFNN--DPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQ 703
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ 1284
A R R GQTKPV YRL+ T+++KI +R K L ++ + Q
Sbjct: 704 AQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNQ 751
Score = 233 (87.1 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 82/263 (31%), Positives = 123/263 (46%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT-PVNVLHNWKQEFMKWRP 808
+ G+ ILA MGLGKT Q IA T V G+ +V P++ L NW EF ++ P
Sbjct: 238 ENGINGILADEMGLGKTIQCIA---TIALMVERGVPGPFLVCGPLSTLPNWMSEFKRFTP 294
Query: 809 SELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICH 868
E+ PL ML ++ R +L+ K + G I SF ++DRN A + C
Sbjct: 295 -EI-PL---MLYHGAQQERRKLVRKIHGRQGSLKIHPVVIT--SFEIAMRDRN-ALQSCF 346
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
L+ DE H IKN + LK+ ++ LTG+PLQNNL E + +++F+
Sbjct: 347 W-----KYLIVDEGHRIKNMNCRLIRELKRFNADNKLLLTGTPLQNNLAELWSLLNFLLP 401
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDV--KIMNQRS-HILYEQLKGFVQRMDMNVVK 985
F + F I + T+ED+ K Q H+L++ L F+ R + V
Sbjct: 402 DVFDDLKSFESWFD--ITS---ITETAEDIIAKEKEQNILHMLHQILTPFLLRRLKSDVA 456
Query: 986 KDLPPKTVFVITVKLSPLQRRLY 1008
++PPK V+ L+ Q Y
Sbjct: 457 LEVPPKREVVVYAPLAKKQETFY 479
Score = 202 (76.2 bits), Expect = 7.1e-32, Sum P(3) = 7.1e-32
Identities = 52/132 (39%), Positives = 74/132 (56%)
Query: 1169 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1228
+G + RLDG S+R++ + +FN + V L+STRAG LGINL +A+ VII D
Sbjct: 638 RGFKFSRLDGSMSYSDREENMHQFNN--DPEVFLFLVSTRAGGLGINLTAADTVIIYDSD 695
Query: 1229 WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT 1288
WNP DLQA R R GQTKPV YRL+ T+++KI +R K R +++ +H+
Sbjct: 696 WNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAK-----RKLEKLIIHKN 750
Query: 1289 ISKEEMLHLFEF 1300
+F
Sbjct: 751 ----------QF 752
Score = 57 (25.1 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 646 EETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVT 680
EE KRK +EK+R+ LKS + Q + K S T
Sbjct: 91 EEQKRKEKLEKKREMMLKSAKGQNPADGKEEKSAT 125
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 276 (102.2 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 122/411 (29%), Positives = 185/411 (45%)
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
GL ILA MGLGKT Q IAFL + + G LIV P + L NW +E W P EL
Sbjct: 451 GLNGILADEMGLGKTIQAIAFLAHIYQEGDRGPH--LIVVPASTLDNWIREVNLWCP-EL 507
Query: 812 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 871
L ++ S++ R L A + F + T + N + DR++ R++ L
Sbjct: 508 NVLFYYV---GSQEDRKHLRADISNRVVDFNVIVTTY-NCAISSS-DDRSLFRKV--KL- 559
Query: 872 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 930
+ + DE HM+KN + Q L ++ + R+ LTG+P+QNNL+E +++FV F
Sbjct: 560 ---NYAIFDEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQNNLLELMSLLNFVMPHMF 616
Query: 931 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 990
S+ E R F + + + ST E +I + + I K F+ R + V K LPP
Sbjct: 617 SSSTSEIRRMFSSKAKTAEE-QSTYEKERIAHAKQII-----KPFILRRVKDEVLKQLPP 670
Query: 991 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ- 1049
K + +S Q +LY L+ NEK A Q L ++ NHP + +
Sbjct: 671 KKDHIELCAMSEKQEQLYCDLLNK--LKKTMKGNEKNSDMGNAMMQ-LRKMANHPLLHRH 727
Query: 1050 -LTKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLH 1107
T DK + D N +I E M DF + K + H
Sbjct: 728 YYTADK--LKTMSKLMLKEPTHCDANPDLIFEDMTVMTDF-----ELHLLCKQY----SH 776
Query: 1108 EHTYK-ELDY---SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 1154
+K ++D SGK +L +L+ GD+ ++FSQ LD++E +L
Sbjct: 777 VSDFKLDMDQILDSGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFL 827
Score = 223 (83.6 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 62/159 (38%), Positives = 90/159 (56%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
LD SGK +L +L+ GD+ ++FSQ LD++E +L K W+ +
Sbjct: 788 LD-SGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFL----------KHWQHR--Y 834
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG+T+ S+R L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 835 IRLDGKTQISDRIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 892
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 1272
D QA R R GQT+ V +L++ GT+EE + K K
Sbjct: 893 DKQAEDRCHRVGQTREVKVIKLISKGTIEESMLKMNQQK 931
Score = 121 (47.7 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 44/143 (30%), Positives = 66/143 (46%)
Query: 692 EVLGDAITGYIVNVVREKG-EEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKS 748
E + + +T + + + G + PS + S +LK +Q +G+ W ++
Sbjct: 398 EEISNKLTKQVTKITEDGGCRWNIEQPSVLNQSLELKPYQKIGLN--WLALLHK------ 449
Query: 749 GDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
GL ILA MGLGKT Q IAFL + + G LIV P + L NW +E W P
Sbjct: 450 --HGLNGILADEMGLGKTIQAIAFLAHIYQEGDRGPH--LIVVPASTLDNWIREVNLWCP 505
Query: 809 SELKPLRVFMLEDVSRDR-RAEL 830
EL L ++ R RA++
Sbjct: 506 -ELNVLFYYVGSQEDRKHLRADI 527
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 262 (97.3 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 66/177 (37%), Positives = 96/177 (54%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+V+L +L + L+FSQ + LD++ YLS +G + RL
Sbjct: 938 SGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSL------------RGFQFQRL 985
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T++ RQ+ ++ FN P + C L+STRAG LGINL +A+ V+I D WNP DLQ
Sbjct: 986 DGSTKAELRQQAMDHFNAPASDDF-CFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQ 1044
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEE 1293
A+ RA R GQ + V YR + ++EE+I +R K L V+ + + K E
Sbjct: 1045 AMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEGRLEKRE 1101
Score = 244 (91.0 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 86/303 (28%), Positives = 148/303 (48%)
Query: 756 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLR 815
ILA MGLGKT Q ++ L + + L+V P++ L NW +EF KW P +
Sbjct: 647 ILADEMGLGKTVQSVSMLGFLQNTQQIP-GPFLVVVPLSTLANWAKEFRKWLPG--MNII 703
Query: 816 VFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPD 875
V++ SR+ + K G I + A ++ +KD+ + +I
Sbjct: 704 VYVGTRASREVCQQYEFYNEKKVGR-PIKFNALLT-TYEVVLKDKAVLSKIKWIY----- 756
Query: 876 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
L+ DEAH +KN+ A AL + + ++ +TG+PLQN++ E + ++ F+ G +
Sbjct: 757 -LMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKD 815
Query: 936 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFV 995
EF +EN ++ +S +E ++ N L+ +L+ + R + V+K LPPK +
Sbjct: 816 EF-------VENYKNLSSFNES-ELAN-----LHLELRPHILRRVIKDVEKSLPPKIERI 862
Query: 996 ITVKLSPLQRRLYKRFLD--LHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKD 1053
+ V++SPLQ++ YK L+ H N V ++ S L + NHP + + + D
Sbjct: 863 LRVEMSPLQKQYYKWILERNFHDL-NKGVRGNQV--SLLNIVVELKKCCNHPFLFE-SAD 918
Query: 1054 KGY 1056
GY
Sbjct: 919 HGY 921
Score = 112 (44.5 bits), Expect = 7.5e-24, Sum P(2) = 7.5e-24
Identities = 37/117 (31%), Positives = 55/117 (47%)
Query: 697 AITGYIVNVVREKGEEAVRI----PS-SISAKLKAHQVVGIRFMWENIIQSIRKVKSGDK 751
A+ G +V R KG+ ++R P I L+ +Q+ G+ F+ V S
Sbjct: 593 AVQGKMVEQQRTKGKASLRKLDEQPEWLIGGTLRDYQLEGLNFL----------VNSWLN 642
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
ILA MGLGKT Q ++ L + + L+V P++ L NW +EF KW P
Sbjct: 643 DTNVILADEMGLGKTVQSVSMLGFLQNTQQIP-GPFLVVVPLSTLANWAKEFRKWLP 698
Score = 37 (18.1 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 656 KERQERLKSLQVQFSSKSKLM 676
K + +L + ++FS+K+KL+
Sbjct: 766 KNSEAQLYTALLEFSTKNKLL 786
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 276 (102.2 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 68/194 (35%), Positives = 106/194 (54%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
+D SGKMV+L +L G + L+FSQ LDL+E + W + ++
Sbjct: 431 VDNSGKMVVLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFC------------WWRHYEY 478
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG T +R +E +N P +K+ +++TRAG LGINL +A+ VII D WNP
Sbjct: 479 CRLDGSTPHEDRSNAIEAYNAPDSKKF-IFMLTTRAGGLGINLATADVVIIYDSDWNPQS 537
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR---QQVHRTIS 1290
DLQA+ RA R GQ K V +RL+ T++E+I ++ K L V+ + + +T+
Sbjct: 538 DLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTLG 597
Query: 1291 KEEMLHLFEFGDDE 1304
K +M+ + G ++
Sbjct: 598 KGDMISMIRHGAEQ 611
Score = 168 (64.2 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 43/136 (31%), Positives = 76/136 (55%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
++ DEAH IKN ++ ++ ++++ + R+ +TG+PLQNNL E + +++F+ SS +
Sbjct: 257 IIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDD 316
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F N +G +T+ + QR H + L+ F+ R + V+K L PK +
Sbjct: 317 FDSWFSNDAMSG-NTD--------LVQRLH---KVLQPFLLRRIKSDVEKSLLPKKEVKV 364
Query: 997 TVKLSPLQRRLYKRFL 1012
V LS +QR Y + L
Sbjct: 365 YVGLSKMQREWYTKVL 380
Score = 105 (42.0 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 756 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
ILA MGLGKT Q I+ + M+ L++ P + L NW EF KW PS
Sbjct: 154 ILADEMGLGKTLQTISMI-GYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPS 206
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 244 (91.0 bits), Expect = 1.7e-37, Sum P(3) = 1.7e-37
Identities = 65/185 (35%), Positives = 101/185 (54%)
Query: 1110 TYKELDYSGKMVLLLD-ILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1168
T + L Y+ + +LD +L G + L+FSQ LD++E Y +
Sbjct: 493 TDEHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYC------------YF 540
Query: 1169 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1228
+ ++ R+DG T +R + ++ +N P +K+ L++TRAG LGINL SA+ V++ D
Sbjct: 541 RNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKF-VFLLTTRAGGLGINLTSADVVVLYDSD 599
Query: 1229 WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT 1288
WNP DLQA+ RA R GQ K V +RL+ ++EEKI +R K L V+ QQ +
Sbjct: 600 WNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVI--QQNRTS 657
Query: 1289 ISKEE 1293
+ K+E
Sbjct: 658 LKKKE 662
Score = 174 (66.3 bits), Expect = 1.7e-37, Sum P(3) = 1.7e-37
Identities = 52/174 (29%), Positives = 86/174 (49%)
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
+ ++ DEAH IKN + +Q L++ + R+ +TG+PLQNNL E + +++F+ +
Sbjct: 319 EYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDA 378
Query: 935 HEFRNRFQNPIENGQHTNSTSEDV-KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 993
+F + F + ST ED KI+ Q L+ L+ F+ R + V+ L PK
Sbjct: 379 QDFDDWFSS--------ESTEEDQDKIVKQ----LHTVLQPFLLRRIKSDVETSLLPKKE 426
Query: 994 FVITVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ V +S +Q++ YK+ L DL S E + Q L + NHP
Sbjct: 427 LNLYVGMSSMQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQ-LRKCCNHP 479
Score = 133 (51.9 bits), Expect = 1.7e-37, Sum P(3) = 1.7e-37
Identities = 37/117 (31%), Positives = 63/117 (53%)
Query: 717 PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 776
P+ ++ +L+ +Q+ G+ W + S+ K K + ILA MGLGKT Q I+FL
Sbjct: 189 PAYVNGQLRPYQIQGVN--W---LVSLHKNK-----IAGILADEMGLGKTLQTISFL-GY 237
Query: 777 MRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK 833
+R + L++ P + L+NW +E +W P + F+L+ ++ RAEL+ K
Sbjct: 238 LRYIEKIPGPFLVIAPKSTLNNWLREINRWTPD----VNAFILQG-DKEERAELIQK 289
Score = 39 (18.8 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 292 VADAIANEKELAL----SEEQRKKFRKVKEED-DA 321
V ++ +KEL L S Q+K ++K+ E+D DA
Sbjct: 417 VETSLLPKKELNLYVGMSSMQKKWYKKILEKDLDA 451
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 253 (94.1 bits), Expect = 2.5e-37, Sum P(4) = 2.5e-37
Identities = 63/187 (33%), Positives = 98/187 (52%)
Query: 1138 LVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197
L+F Q LD++E L K PG + RLDG ++ R +V RFN +
Sbjct: 1658 LIFCQLKSMLDIVEQDLLKPQLPGVT---------YLRLDGSVQAGLRHSIVSRFNN--D 1706
Query: 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 1257
+ L++T G LG+NL A+ V+ V+ WNP DLQA+ RA R GQ + V YRL+
Sbjct: 1707 PSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLIT 1766
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFGDDENPDPLTAVSKEN 1316
GT+EEKI Q K +A V+ ++ +++ E++L+LF D+ + S +
Sbjct: 1767 RGTLEEKIMGLQKFKMTIANTVISQENASLQSMGTEQLLNLFTLDKDDKAEKCDGSSSSS 1826
Query: 1317 GQGSSQN 1323
G+ S ++
Sbjct: 1827 GKSSMKS 1833
Score = 230 (86.0 bits), Expect = 2.5e-37, Sum P(4) = 2.5e-37
Identities = 57/184 (30%), Positives = 96/184 (52%)
Query: 878 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 937
+ DE H+IKN + ++A+KQ+ R+ L+G+P+QNN++E + + DF+ GFLG+ +F
Sbjct: 1412 ILDEGHVIKNGKTKLSKAIKQLTANYRLILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1471
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 997
R+ PI + S+S + + L+ Q+ F+ R + V +DLPPK +
Sbjct: 1472 AARYGKPILASRDAKSSSREQEAGVLAMEALHRQVLPFLLRRMKDDVLQDLPPKIIQDYY 1531
Query: 998 VKLSPLQRRLYKRFLDLHGFTN--DRVSNE---------KIRKS--FFAGYQALAQIWNH 1044
LSPLQ +LY+ F N D +S K++ + F Q L ++ NH
Sbjct: 1532 CNLSPLQVQLYEDFAKSRAKVNVDDVISTASTQEDEEKPKLKATGHVFQALQYLRKLCNH 1591
Query: 1045 PGIL 1048
P ++
Sbjct: 1592 PALV 1595
Score = 79 (32.9 bits), Expect = 2.5e-37, Sum P(4) = 2.5e-37
Identities = 45/174 (25%), Positives = 72/174 (41%)
Query: 712 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIA 771
E +IP I A+L+ +Q G+ W + + K K L IL MGLGKT Q I
Sbjct: 1264 ENYKIPVPIKAELRKYQQDGVN--W---LAFLNKYK-----LHGILCDDMGLGKTLQSIC 1313
Query: 772 FL----------YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE-LKPLRVFMLE 820
L YT ++ + +++V P + +W E K+ E L PL
Sbjct: 1314 ILAGDHFLRAQEYTRTKAPDSCPLPSIVVCPPTLTGHWVDEVGKFCSKEFLNPLHY---- 1369
Query: 821 DVSRDRRAELLAKWRAKGGVFLIGYTAFRN-LSFGKHVKDRNMAREICHALQDG 873
RA L + + K + + Y RN + F + +K + H +++G
Sbjct: 1370 TGPPTERARLQHQVK-KHNLIVASYDVVRNDVEFFRDIKFNYCILDEGHVIKNG 1422
Score = 45 (20.9 bits), Expect = 2.5e-37, Sum P(4) = 2.5e-37
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 118 ALDELETESAHLLEQLDGAGIELPSLYRLIE 148
ALD E +S+ LL+Q D +L + +++E
Sbjct: 1070 ALDAQEFDSSQLLKQGDSVAQDLVNSLQVLE 1100
Score = 37 (18.1 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 185 FLQTERPVRRRHGK 198
FL TER R+GK
Sbjct: 1464 FLGTERQFAARYGK 1477
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 242 (90.2 bits), Expect = 2.7e-37, Sum P(4) = 2.7e-37
Identities = 64/182 (35%), Positives = 97/182 (53%)
Query: 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 1177
GK+ L +L G ++L+F+Q LD++E +++ L+ G + RLD
Sbjct: 1075 GKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFIN----------LY--GYTYMRLD 1122
Query: 1178 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQA 1237
G T ERQ L++RFN N ++ ++STR+G +GINL A+ VI D WNP D QA
Sbjct: 1123 GSTPPEERQTLMQRFNT--NPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQA 1180
Query: 1238 IYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKE-EMLH 1296
R R GQT+ V YRL++ T+EE I K+ K L V+ + + K+ + +
Sbjct: 1181 QDRCHRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPME 1240
Query: 1297 LF 1298
LF
Sbjct: 1241 LF 1242
Score = 203 (76.5 bits), Expect = 2.7e-37, Sum P(4) = 2.7e-37
Identities = 57/176 (32%), Positives = 88/176 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
L+ DEAH+IKN ++ Q L +RRI LTG+PLQN+LME + ++ F+ S E
Sbjct: 661 LILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQE 720
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F++ F NPI G + +++++ L+ L+ F+ R V+K LP K VI
Sbjct: 721 FKDWFCNPIA-GMVEGQEKINKEVIDR----LHNVLRPFLLRRLKRDVEKQLPSKHEHVI 775
Query: 997 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQ---IWNHPGILQ 1049
+LS QR LY+ F+ + SFF + Q + NHP + +
Sbjct: 776 FCRLSKRQRNLYEDFI-----ASTETQATLTSGSFFGMISIIMQLRKVCNHPDLFE 826
Score = 116 (45.9 bits), Expect = 2.7e-37, Sum P(4) = 2.7e-37
Identities = 31/69 (44%), Positives = 40/69 (57%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGL-RTALIVTPVNVLHNWKQEFMKWRP 808
+K L ILA MGLGKT IA L A + + G+ LIV P +V+ NW+ EF+KW P
Sbjct: 552 EKKLNGILADEMGLGKTIMTIALL--AHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCP 609
Query: 809 SELKPLRVF 817
+ K L F
Sbjct: 610 A-FKILTYF 617
Score = 48 (22.0 bits), Expect = 2.7e-37, Sum P(4) = 2.7e-37
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 640 DDAELGEETKRKIAIEKERQERLKSLQ 666
DD + EE ++ ++ERQE L++LQ
Sbjct: 223 DDEDTIEEDEKHFT-KRERQEELEALQ 248
Score = 48 (22.0 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1091 KNDDGFFQKDWWNDLLHEHTYKE 1113
+N+ GF +K+W +L H YKE
Sbjct: 1414 ENEAGFEEKEW--ELDHIEKYKE 1434
Score = 43 (20.2 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 871 QDGPDILVCDEAHMIKNTRADTTQALK 897
+D D + DE H K R + +AL+
Sbjct: 222 EDDEDTIEEDEKHFTKRERQEELEALQ 248
Score = 40 (19.1 bits), Expect = 1.8e-36, Sum P(4) = 1.8e-36
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 98 DDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQL 133
DD + EDE K + + L+ L+ E +E+L
Sbjct: 223 DDEDTIEEDEKHFTKRERQEELEALQNEVDLPVEEL 258
Score = 37 (18.1 bits), Expect = 3.7e-36, Sum P(4) = 3.7e-36
Identities = 23/114 (20%), Positives = 42/114 (36%)
Query: 294 DAIANEKELALSEEQRKKFR-KVKEEDDANMDXXXXXXXXXXXXXXISKQKEIGSVDWTI 352
+A+ NE +L + E R+ +V E D K + ++
Sbjct: 245 EALQNEVDLPVEELLRRYTSGRVSRETSPVKDENEDNLTSVSRVTSPVKDENQDNLASVG 304
Query: 353 EDSAVETRPLVDASKSLSNKKTD-DGDMPGNN--NEVALQNLETGVLESSVKER 403
+D + L + ++ N D G+ +E +LE G+ +SVK R
Sbjct: 305 QDHGEDKNNLAASEETEGNPSVRRSNDSYGHLAISETHSHDLEPGMTTASVKSR 358
Score = 37 (18.1 bits), Expect = 2.1e-13, Sum P(3) = 2.1e-13
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 788 LIVTPVNVLHNWKQEFMKWR 807
LI+ +++ NWK + +W+
Sbjct: 661 LILDEAHLIKNWKSQ--RWQ 678
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 255 (94.8 bits), Expect = 3.2e-37, Sum P(5) = 3.2e-37
Identities = 74/194 (38%), Positives = 103/194 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
+GK LL IL G K+L+F Q + ++E YL + K WK + RL
Sbjct: 1186 AGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYL--------RSKNWK----YLRL 1233
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T+S +R L+ +FN+P + V ++STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 1234 DGSTKSDDRCSLLAQFNDPKSD-VYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1292
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEE--- 1293
A RA R GQTK V RL+ ++EE I R K L +V+ + + EE
Sbjct: 1293 AQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEEREA 1352
Query: 1294 -MLHLFEF-GDDEN 1305
+ L E GDD++
Sbjct: 1353 FLRSLLEHDGDDDH 1366
Score = 197 (74.4 bits), Expect = 3.2e-37, Sum P(5) = 3.2e-37
Identities = 62/180 (34%), Positives = 90/180 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H IKNT++ T L Q R+ LTG+PLQNNL E + +++FV S
Sbjct: 993 MIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNSIK 1052
Query: 936 EFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 993
F F P N GQ +E+ ++ + L++ L+ F+ R V+K+LP K
Sbjct: 1053 SFDEWFNTPFANTGGQDKIGLNEEEALLIIKR--LHKVLRPFLFRRLKKDVEKELPDKVE 1110
Query: 994 FVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ----ALAQIWNHPGILQ 1049
VI LS LQ +LY++ + HG V EK K+ G Q L +I NHP I +
Sbjct: 1111 KVIKCPLSGLQLKLYQQ-MKKHGMLF--VDGEK-GKTGIKGLQNTVMQLKKICNHPFIFE 1166
Score = 120 (47.3 bits), Expect = 3.2e-37, Sum P(5) = 3.2e-37
Identities = 46/160 (28%), Positives = 69/160 (43%)
Query: 656 KERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEV-LGDAITGYIVNVVREKGEEAV 714
K+ + L++L + ++S G S A +E + + V + E V
Sbjct: 799 KQTDQYLENLTRAVRIQQSNIHSGNTSGKGSNSAELEAPISEEDKNLDYFKVAHRIHEEV 858
Query: 715 RIPSS-ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 773
P + LK +Q+ G+ +M + + L ILA MGLGKT Q IAF+
Sbjct: 859 EQPKIFVGGTLKDYQLKGLEWM----------LSLYNNNLNGILADEMGLGKTIQTIAFI 908
Query: 774 -YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 812
Y + G LI+ P++ L NW EF KW PS K
Sbjct: 909 TYLIEKKNQQG--PFLIIVPLSTLTNWIMEFEKWAPSVKK 946
Score = 48 (22.0 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 82 KLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELP 141
+++ R+ L QAL DD EAA Y + + A D T HLL+Q D L
Sbjct: 762 RIERSARQRL-QALRADD-EAA-------YLQLLDKAKD---TRITHLLKQTDQYLENLT 809
Query: 142 SLYRLIENQVPNG 154
R+ ++ + +G
Sbjct: 810 RAVRIQQSNIHSG 822
Score = 40 (19.1 bits), Expect = 3.2e-37, Sum P(5) = 3.2e-37
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 178 SIAGAEDFLQTERPVRRRHGKLLEEGAS 205
SIA DFL+ E + + K+L++ S
Sbjct: 615 SIANRIDFLEKENRPKSVNKKILQQDKS 642
Score = 39 (18.8 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 975 FVQRM-DMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRK 1029
F Q + M+ VKKD P + + T K +P + + +F V NE + K
Sbjct: 480 FQQNVPQMSSVKKDTPTRDANMRTSK-APYIQNIPNQFQRRAYSATIPVKNESLAK 534
Score = 38 (18.4 bits), Expect = 3.2e-37, Sum P(5) = 3.2e-37
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 642 AELGEETKRKIAIEKERQERLKSLQ 666
A L +E K++I E+ ++RL++L+
Sbjct: 753 AHLEKEEKKRI--ERSARQRLQALR 775
>TAIR|locus:2042619 [details] [associations]
symbol:DRD1 "DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006306 "DNA methylation" evidence=RCA;IMP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IGI] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0006260 "DNA replication" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0007267
"cell-cell signaling" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0010050 "vegetative phase change"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016571 "histone methylation"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0050832 GO:GO:0003677
GO:GO:0004386 GO:GO:0030422 GO:GO:0006306 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC007047
KO:K10875 IPI:IPI00539494 PIR:G84539 RefSeq:NP_179232.1
UniGene:At.40283 ProteinModelPortal:Q9SIW2 SMR:Q9SIW2 STRING:Q9SIW2
PaxDb:Q9SIW2 PRIDE:Q9SIW2 EnsemblPlants:AT2G16390.1 GeneID:816136
KEGG:ath:AT2G16390 TAIR:At2g16390 HOGENOM:HOG000029425
InParanoid:Q9SIW2 OMA:ISKMWFE PhylomeDB:Q9SIW2
ProtClustDB:CLSN2683737 ArrayExpress:Q9SIW2 Genevestigator:Q9SIW2
Uniprot:Q9SIW2
Length = 888
Score = 282 (104.3 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 73/254 (28%), Positives = 128/254 (50%)
Query: 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 780
+A++K HQ+ G +F+ N++ + D G GCI+AH G GKTF +I+F+ + +
Sbjct: 347 AAEMKPHQIEGFQFLCSNLV-------ADDPG-GCIMAHAPGSGKTFMIISFMQSFLAKY 398
Query: 781 NLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGV 840
L+V P +L WK+EF++W+ ++ L + + +R ++ +L +W K +
Sbjct: 399 PQA--KPLVVLPKGILPTWKKEFVRWQVEDIPLLDFYSAKAENRAQQLSILKQWMEKKSI 456
Query: 841 FLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVK 900
+GY F + D +EI L P IL+ DE H +N + Q+L QV+
Sbjct: 457 LFLGYQQFSTIVCDD-TTDSLSCQEI---LLKVPSILILDEGHTPRNEDTNLLQSLAQVQ 512
Query: 901 CQRRIALTGSPLQNNLMEYYCMVDFVREGFL--GSSHEFRNRF--QNPIE-NGQHTNSTS 955
R++ L+G+ QN++ E + +++ VR FL +S R P + G+ T S S
Sbjct: 513 TPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLDTSKSAVKRILAYTPCDVRGRLTGSNS 572
Query: 956 EDVKIMNQR-SHIL 968
+ + N+ H L
Sbjct: 573 DMASMFNETVEHTL 586
Score = 211 (79.3 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 61/173 (35%), Positives = 92/173 (53%)
Query: 1103 NDLLHEHTYKELDYS-G-KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRP 1160
+D + ++LD + G K L+++ +C + G+K LVFSQ + L +E R
Sbjct: 677 SDTTMDEMVEKLDLNEGVKAKFFLNLINLCDSAGEKLLVFSQYLIPLKFLE-------RL 729
Query: 1161 GKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSAN 1220
K WK GK+ + L G T S +R+ +E FN + K S +A GI+L A+
Sbjct: 730 AALAKGWKLGKEVFVLTGNTSSEQREWSMETFNS--SPDAKIFFGSIKACGEGISLVGAS 787
Query: 1221 RVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKE 1273
R++I+D NP+ QAI RA+R GQ K V AYRL+A + EE+ + KE
Sbjct: 788 RILILDVPLNPSVTRQAIGRAFRPGQKKMVHAYRLIAGSSPEEEDHNTCFKKE 840
Score = 57 (25.1 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 22/85 (25%), Positives = 35/85 (41%)
Query: 926 VREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVK 985
VR GS+ + + F +E HT SED + + L E K + + +
Sbjct: 563 VRGRLTGSNSDMASMFNETVE---HTLQKSEDFTVKIKVIQDLREMTKKVLHYYKGDFLD 619
Query: 986 KDLPPKTVFVITVKLSPLQRRLYKR 1010
+LP F + + LSP Q K+
Sbjct: 620 -ELPGLADFTVVLNLSPKQLNEVKK 643
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 228 (85.3 bits), Expect = 3.5e-37, Sum P(5) = 3.5e-37
Identities = 64/172 (37%), Positives = 92/172 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ LL IL G + L+F Q + ++E +L+ G G + + RL
Sbjct: 682 SGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLA-----G--GTI-----QYLRL 729
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T+ ER L+++FN P N ++STRAG LG+NL +A+ VII D WNP D+Q
Sbjct: 730 DGSTKPDERGALLDKFNAP-NSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQ 788
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKI-----YKRQVTKEGLAARVVDRQ 1283
A RA R GQ V +RL+ ++EEKI YK V ++ + A D +
Sbjct: 789 AQDRAHRIGQKAEVRVFRLITANSVEEKILAAARYKLNVDEKVIQAGKFDNR 840
Score = 206 (77.6 bits), Expect = 3.5e-37, Sum P(5) = 3.5e-37
Identities = 54/178 (30%), Positives = 89/178 (50%)
Query: 877 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KN T+ L + +CQRR+ +TG+PLQN L E + +++F+ S
Sbjct: 490 MIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPELWALLNFLLPSIFSSCS 549
Query: 936 EFRNRFQNPIEN-GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
F F P G+ T E+ ++ +R H + L+ F+ R V+ +LP K F
Sbjct: 550 TFEQWFNAPFATTGEKVELTQEETMLIIRRLH---KVLRPFLLRRLKKEVESELPDKMEF 606
Query: 995 VITVKLSPLQRRLYKRF---LDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQ 1049
V+ +S LQ+ LYK L L G TN ++ +R + L ++ NHP + +
Sbjct: 607 VVRCDMSALQKVLYKHMQKGLLLDGKTN--TGSKSLRNTMIH----LRKLCNHPFLFE 658
Score = 121 (47.7 bits), Expect = 3.5e-37, Sum P(5) = 3.5e-37
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 780
S KLK +Q+ G+ +M V + L ILA MGLGKT Q IAF+ T + +
Sbjct: 363 SLKLKPYQIKGLEWM----------VSLFNNNLNGILADEMGLGKTIQTIAFI-TYLMEI 411
Query: 781 NLGLRTALIVTPVNVLHNWKQEFMKW 806
L++ P++ + NW+ EF KW
Sbjct: 412 KKTSGPFLVIVPLSTVPNWQNEFDKW 437
Score = 49 (22.3 bits), Expect = 3.5e-37, Sum P(5) = 3.5e-37
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 112 KEQWEAALDELETES-AHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAH 165
+E + A LDE + + +LLEQ D L L + +N T+++ R+ +
Sbjct: 251 EEGYRAMLDEKKDQRLVYLLEQTDDYIKSLCDLLKQQQNATAGSLATKSYIRKEY 305
Score = 41 (19.5 bits), Expect = 3.5e-37, Sum P(5) = 3.5e-37
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 364 DASKSLSNKKTDDGDMPGNNNEVALQNLET---GVLESSVKERSLSNG 408
D KS+ +K +D D N ++ +++ T GV E +KE+ G
Sbjct: 312 DKVKSILDKARNDDDEYENKTKMNIEDYYTTAHGVREE-IKEQHFMMG 358
Score = 37 (18.1 bits), Expect = 2.2e-36, Sum P(4) = 2.2e-36
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 174 EMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDI 227
+ + + AG+ L T+ +R+ + + EE + K ND E K +I
Sbjct: 286 QQQNATAGS---LATKSYIRKEYDGVAEEDKVKSILDKARNDDDEYENKTKMNI 336
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 272 (100.8 bits), Expect = 4.7e-37, Sum P(5) = 4.7e-37
Identities = 72/216 (33%), Positives = 115/216 (53%)
Query: 1113 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKD 1172
+ D +GK+ L +L G + L+F+Q LD++E +L+ G L+
Sbjct: 2026 QYDCAGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY------HGHLY----- 2074
Query: 1173 WYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1232
RLDG T +RQ L+ERFN +KR+ C ++STR+G +G+NL A+ V+ D WNPT
Sbjct: 2075 -LRLDGSTRVEQRQALMERFNA--DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPT 2131
Query: 1233 YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKE 1292
D QA R R GQT+ V YRL++ T+EE I K+ K L ++ K+
Sbjct: 2132 MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQ 2191
Query: 1293 EMLH-LFEFGDDENP-DPLTAVSKENGQG-SSQNTN 1325
+ + LF+ +E P +++V +E + +S+ T+
Sbjct: 2192 QTIRELFDMPLEEPPGSSVSSVPEEEEETVASKQTH 2227
Score = 189 (71.6 bits), Expect = 4.7e-37, Sum P(5) = 4.7e-37
Identities = 54/171 (31%), Positives = 85/171 (49%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
L+ DEA IKN ++ Q+L QRR+ LTG+PLQN+LME + ++ F+ S E
Sbjct: 753 LILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHRE 812
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F+ F NP+ G S + ++ + L++ L+ F+ R V+K +P K VI
Sbjct: 813 FKEWFSNPL-TGMIEGSQEYNEGLVKR----LHKVLRPFLLRRVKVDVEKQMPKKYEHVI 867
Query: 997 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 1047
+LS QR LY F+ T + ++ S L ++ NHP +
Sbjct: 868 RCRLSKRQRCLYDDFM-AQTTTKETLATGHFM-SVINILMQLRKVCNHPNL 916
Score = 117 (46.2 bits), Expect = 4.7e-37, Sum P(5) = 4.7e-37
Identities = 38/135 (28%), Positives = 64/135 (47%)
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL-Y 774
IP + +L+ +Q +G+ ++ V +K L ILA MGLGKT Q I+ L +
Sbjct: 620 IPLLLRGQLREYQHIGLDWL----------VTMYEKKLNGILADEMGLGKTIQTISLLAH 669
Query: 775 TAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW 834
A N G LI+ P +V+ NW+ E +W PS ++ ++R+ + W
Sbjct: 670 LACEKGNWGPH--LIIVPTSVMLNWEMELKRWCPS----FKILTYYGAQKERKLKRQG-W 722
Query: 835 RAKGGVFLIGYTAFR 849
K F + T+++
Sbjct: 723 -TKPNAFHVCITSYK 736
Score = 44 (20.5 bits), Expect = 4.7e-37, Sum P(5) = 4.7e-37
Identities = 20/109 (18%), Positives = 41/109 (37%)
Query: 270 KFPGXXXXXXXXXXXGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDXXXXX 329
++ G GNS+D +A +++ EL EE R +E+ + D
Sbjct: 451 QYAGAYAYDASAPGSGNSEDEEEVEANSSDCEL---EETRDVEEAAQEDSSSQSDSAEEH 507
Query: 330 XXXXXXXXXISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGD 378
++E+ + E + E+ S++ ++ D+GD
Sbjct: 508 SEDEEDEHS---EEEMSGSSQSEESESDESEDAQSQSQA-DEEQEDEGD 552
Score = 41 (19.5 bits), Expect = 4.7e-37, Sum P(5) = 4.7e-37
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 98 DDLEAAVEDEMTVYKEQWEAALDELETESAHLLE 131
DD E ++ +E AA ++LE E H +E
Sbjct: 400 DDEEFTANEDEAEDEEDTIAAEEQLEGEVDHAME 433
Score = 40 (19.1 bits), Expect = 1.9e-36, Sum P(5) = 1.9e-36
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 306 EEQRKKFRKVKEEDDANM 323
EEQR+K + + E+ A +
Sbjct: 174 EEQRQKEERARREEQAKL 191
Score = 39 (18.8 bits), Expect = 1.5e-36, Sum P(5) = 1.5e-36
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 341 KQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSV 400
++ E S D +E ETR + +A++ S+ ++D + + E ++ E + SS
Sbjct: 472 EEVEANSSDCELE----ETRDVEEAAQEDSSSQSDSAEEHSEDEED--EHSEEEMSGSSQ 525
Query: 401 KERSLSN 407
E S S+
Sbjct: 526 SEESESD 532
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 262 (97.3 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 69/169 (40%), Positives = 97/169 (57%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
L SGK++LL +L + G + L+FSQ + LD+++ YL +L R Q
Sbjct: 707 LKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYL-QLRRFPSQ---------- 755
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG + R++ ++ +N P + L+STRAG LGINL +A+ VII D WNP
Sbjct: 756 -RLDGSMRADLRKQALDHYNAPGSTDF-AFLLSTRAGGLGINLATADTVIIFDSDWNPQN 813
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282
DLQA+ RA R GQTK V YRL+ G++EE+I +R K L V+ R
Sbjct: 814 DLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQR 862
Score = 235 (87.8 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 78/262 (29%), Positives = 127/262 (48%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
KG ILA MGLGKT Q I+ L + +L L+V P++ + W++EF +W P E
Sbjct: 422 KGNSSILADEMGLGKTIQSISLLASLFHRYDLA-GPYLVVVPLSTMAAWQKEFAQWAP-E 479
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL 870
+ L V+M + VSRD + +W GG + A ++ +KD+ I
Sbjct: 480 MN-LVVYMGDVVSRDMIRQY--EWFV-GGTKKMKINAILT-TYEILLKDKAFLSSI---- 530
Query: 871 QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 930
D +LV DEAH +KN + ++L Q + ++ +TG+PLQN+L E + ++ F+
Sbjct: 531 -DWAALLV-DEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLHFIMPEK 588
Query: 931 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 990
EF H S + + L+++L+ F+ R V+K LPP
Sbjct: 589 FDCWEEFETA---------HNESNHKGISA-------LHKKLEPFLLRRVKKDVEKSLPP 632
Query: 991 KTVFVITVKLSPLQRRLYKRFL 1012
KT ++ V ++ Q++ YK L
Sbjct: 633 KTEQILRVDMTAHQKQFYKWIL 654
Score = 52 (23.4 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 1016 GFTNDRVSNEKIRKSFFA---GYQALAQIWNHPGILQLTKDKG 1055
G ND++ +K + FF G+ L W L L KG
Sbjct: 224 GDPNDQIPGDKTEQQFFVKWTGWSHLHNTWESENSLALMNAKG 266
>UNIPROTKB|H0Y3T0 [details] [associations]
symbol:ATRX "Transcriptional regulator ATRX" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 PROSITE:PS51192
EMBL:AL121874 EMBL:AL109753 EMBL:Z84487 HGNC:HGNC:886
ProteinModelPortal:H0Y3T0 Ensembl:ENST00000400866 Uniprot:H0Y3T0
Length = 160
Score = 409 (149.0 bits), Expect = 6.6e-37, P = 6.6e-37
Identities = 73/140 (52%), Positives = 105/140 (75%)
Query: 874 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGS 933
PD +VCDE H++KN + ++A+ ++ +RRI LTG+PLQNNL+EY+CMV+F++E LGS
Sbjct: 2 PDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGS 61
Query: 934 SHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 993
EFRNRF NPI+NGQ +ST DV++M +R+HILYE L G VQR D + K LPPK
Sbjct: 62 IKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHE 121
Query: 994 FVITVKLSPLQRRLYKRFLD 1013
+V+ V+++ +Q +LY+ +LD
Sbjct: 122 YVLAVRMTSIQCKLYQYYLD 141
>DICTYBASE|DDB_G0288873 [details] [associations]
symbol:pich "polo-interacting checkpoint helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0288873 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000125 RefSeq:XP_636560.1
EnsemblProtists:DDB0233442 GeneID:8626845 KEGG:ddi:DDB_G0288873
InParanoid:Q54IB7 OMA:DYGHEEE Uniprot:Q54IB7
Length = 1332
Score = 274 (101.5 bits), Expect = 6.8e-37, Sum P(3) = 6.8e-37
Identities = 72/192 (37%), Positives = 109/192 (56%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK LLL +L G + L+FSQS+ L+ E L L G + R+
Sbjct: 805 SGKFQLLLKLLPNLHQDGHRVLMFSQSVKMLEDFEILLDHL------------GLTYLRI 852
Query: 1177 DGRTESSE-RQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1235
DG S++ RQ++++ +N ++ +++ + G+LG+NL SA+RV+I+D SWN T D
Sbjct: 853 DGSISSTKKRQEIIDLYNTDMS--YFAFIMTIQVGALGLNLTSADRVLILDPSWN-TIDN 909
Query: 1236 QAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV--HRTISKEE 1293
QA+ RA+R GQ K V YRLM+ GT+EEKIY++QV K L +++ HR S +
Sbjct: 910 QAVDRAYRIGQKKDVVVYRLMSCGTIEEKIYRKQVFKGSLMKTMLNNTMSGQHRYFSSND 969
Query: 1294 MLHLFEFGDDEN 1305
+ +F DD N
Sbjct: 970 LREMFTL-DDTN 980
Score = 220 (82.5 bits), Expect = 6.8e-37, Sum P(3) = 6.8e-37
Identities = 71/237 (29%), Positives = 114/237 (48%)
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 813
G IL MGLGKT Q+ +FL +M S + L+V PV ++ +W +EF ++ P L
Sbjct: 413 GGILGDDMGLGKTMQICSFL-NSMHSQG-HISHTLLVMPVGLIEHWLKEFNRFNPKYL-- 468
Query: 814 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
+RVF + R + L + +GG+ + Y G V N+ I + +
Sbjct: 469 VRVFHGNNTIE--RNKSLKRVMNEGGIIITTY--------GMVVS--NVDSMIENGRKSF 516
Query: 874 P-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV-REGFL 931
D ++ DE H IK T+ ++ + + + +I LTG+ +QNNL E + + D+V L
Sbjct: 517 IWDYVILDEGHKIKETKTQISKTMHRFNAKHKIILTGTAIQNNLRELWALFDWVCGSTLL 576
Query: 932 GSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
GS F F PI HT+ +S+D KI + E L+ + + KKD+
Sbjct: 577 GSVRNFTANFSKPIIKA-HTSDSSQDQKITGSA---IAEDLRNIIAPHFLRREKKDV 629
Score = 111 (44.1 bits), Expect = 4.3e-28, Sum P(4) = 4.3e-28
Identities = 39/143 (27%), Positives = 68/143 (47%)
Query: 703 VNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 762
+N + K + ++ I L +Q G+ ++W N+ + G IL MG
Sbjct: 372 INSTKSKEGKYFKMKDKIYDGLYWYQRDGVNWLW-NLFC---------RHAGGILGDDMG 421
Query: 763 LGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDV 822
LGKT Q+ +FL +M S + L+V PV ++ +W +EF ++ P L +RVF +
Sbjct: 422 LGKTMQICSFL-NSMHSQG-HISHTLLVMPVGLIEHWLKEFNRFNPKYL--VRVFHGNNT 477
Query: 823 SRDRRAELLAKWRAKGGVFLIGY 845
R + L + +GG+ + Y
Sbjct: 478 IE--RNKSLKRVMNEGGIIITTY 498
Score = 71 (30.1 bits), Expect = 4.3e-28, Sum P(4) = 4.3e-28
Identities = 29/106 (27%), Positives = 51/106 (48%)
Query: 946 ENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP-KTVFVITVKLSPLQ 1004
+N Q N E+V++ +S K V++ M++V + K FV+ KL+ Q
Sbjct: 675 QNNQE-NEEEEEVEVSEDKSGNKIATPKKLVKKR-MSMVGGGIKTRKNDFVVWTKLADSQ 732
Query: 1005 RRLYKRFLDLHGFTNDRVSNEKIR-KSFFAGYQALAQIWNHPGILQ 1049
LY+ FL+ +D V + + +S A L +I +HP +L+
Sbjct: 733 IELYRTFLE-----SDEVKDALNKTQSPLAALTVLKKICDHPHLLR 773
Score = 53 (23.7 bits), Expect = 6.8e-37, Sum P(3) = 6.8e-37
Identities = 23/111 (20%), Positives = 47/111 (42%)
Query: 295 AIANEKELALSEEQRKKFRKV-KEEDDANMDXXXXXXXXXXXXXXISKQKEIGSVDWTIE 353
+I N+ E +E +KV +E D++ + +E + E
Sbjct: 98 SICNDSEDEDEDEDEDNHQKVILDESDSDEKKKVEVKSSTLKSIQTPESEEESEEEEESE 157
Query: 354 DSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERS 404
+ + E P+V+ SLS K + +++E+ LQ + +S+ KE++
Sbjct: 158 EESEEEVPIVNKKSSLSKKSI----ISESDDELLLQTVNK---KSTTKEKT 201
Score = 46 (21.3 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 13/58 (22%), Positives = 33/58 (56%)
Query: 79 SLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELET-ESAHLLEQLDG 135
+L+ ++E EE +++ ++ + E+E +E+ E +E E + + +++QL+G
Sbjct: 304 TLILSESEEEEESDGSIYQEESDDYQEEEEEEEEEEEEEEEEEEENIDPSKMVDQLNG 361
Score = 39 (18.8 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 1110 TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPT 1146
T ELD K +L L M + D L+FS+++ T
Sbjct: 998 TSPELDEHLKFLLGLG---MVFGVSDHDLLFSEAVTT 1031
Score = 37 (18.1 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 306 EEQRKKFRKVKEEDDANMD 324
EE+ ++ + +EE++ N+D
Sbjct: 333 EEEEEEEEEEEEEEEENID 351
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 242 (90.2 bits), Expect = 9.0e-37, Sum P(4) = 9.0e-37
Identities = 60/193 (31%), Positives = 102/193 (52%)
Query: 878 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 937
V DE H+IKN RA T+A+K ++ R+ L+G+P+QNN++E + + DF+ GFLG+ F
Sbjct: 1492 VLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTF 1551
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 997
+ RF PI + S+S++ + +++Q+ F+ R V DLPPK +
Sbjct: 1552 QERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVLADLPPKIIQDYY 1611
Query: 998 VKLSPLQRRLYKRFL-------DLHGFTNDRVSNEKIRKS----FFAGYQALAQIWNHPG 1046
+S LQR+L F+ +L ++ + +KS F Q + ++ NHP
Sbjct: 1612 CDMSDLQRKLLNDFVSQLNINEELEDDETEKTQGTRKKKSQKAHIFQALQYMRKLCNHPA 1671
Query: 1047 ILQLTKDKGYPSR 1059
++ LT+ +P R
Sbjct: 1672 LI-LTEK--HPKR 1681
Score = 241 (89.9 bits), Expect = 9.0e-37, Sum P(4) = 9.0e-37
Identities = 65/185 (35%), Positives = 97/185 (52%)
Query: 1138 LVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197
L+F Q LD++E L + P + RLDG E ++RQ+ V +FN +
Sbjct: 1740 LIFCQLKDMLDMVEKDLLQATMPDVT---------YMRLDGSVEPTKRQEAVTKFNN--D 1788
Query: 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 1257
+ L++T G LG+NL A+ VI V+ WNP DLQA+ RA R GQ K V YRL+
Sbjct: 1789 PSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLIT 1848
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFGDDENPDPLTAVSKEN 1316
G +EEKI Q K +A+ VV++Q +I +++L LF DE + + KE
Sbjct: 1849 RGCLEEKIMGLQRFKMNVASTVVNQQNAGLSSIGTDQILDLFNTTADEQ-QTVQNIDKEE 1907
Query: 1317 GQGSS 1321
+ ++
Sbjct: 1908 SEDAA 1912
Score = 82 (33.9 bits), Expect = 9.0e-37, Sum P(4) = 9.0e-37
Identities = 43/149 (28%), Positives = 63/149 (42%)
Query: 712 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIA 771
EA IP ISA L+ +Q G+ W + + K + L IL MGLGKT Q I
Sbjct: 1346 EAFSIPVPISADLRKYQQEGVN--W---LAFLNKYE-----LHGILCDDMGLGKTLQTIC 1395
Query: 772 FL----YTAMR------SVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED 821
+ Y + S +LIV P + +W+QE + P L+V
Sbjct: 1396 IVASDHYNRQKLFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPF----LKVSAYVG 1451
Query: 822 VSRDRRAELLAKWRAKGGVFLIGYTAFRN 850
+R A++ +K + K V + Y RN
Sbjct: 1452 PPAER-AKIRSKMK-KSDVVVTSYDICRN 1478
Score = 42 (19.8 bits), Expect = 1.4e-36, Sum P(5) = 1.4e-36
Identities = 18/67 (26%), Positives = 29/67 (43%)
Query: 465 DHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNV-IVCKDCKCLLEK 523
D S+ ++ D NS S + S + T+ NN E P P NV + + L K
Sbjct: 231 DDSIM-NDLGDNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTPSENVHLSARQRNALKRK 289
Query: 524 KMHVKDA 530
+K++
Sbjct: 290 ARQMKNS 296
Score = 41 (19.5 bits), Expect = 1.4e-36, Sum P(5) = 1.4e-36
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 357 VETRPLVDASKSLSNKKTDDGDMP---GNNNEVALQNLETGVLESSVKERSLSNGI 409
VE P+ + +++ KK + D+P G+ E E G SS + +S+ +
Sbjct: 69 VENVPVWNPNRTSPVKKEETEDLPSFNGDTEEKPFIKTEEGAPASSQSQVVVSSNL 124
Score = 39 (18.8 bits), Expect = 4.6e-36, Sum P(5) = 4.6e-36
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 156 CTEAWKRRAHWVGSQVTSEMRESIA 180
C A R ++ QV + +RES++
Sbjct: 426 CVFALDRFGDYLADQVVAPIRESVS 450
Score = 39 (18.8 bits), Expect = 4.6e-36, Sum P(5) = 4.6e-36
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 364 DASKSLSNKKTDDGDMPGNNNEVALQNL 391
D + +S K DD D N+ + +L ++
Sbjct: 1079 DNDEQVSGKLVDDSDDVSNDRKSSLSSV 1106
Score = 38 (18.4 bits), Expect = 9.0e-37, Sum P(4) = 9.0e-37
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 359 TRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSN 407
T + + S++N K +D P N V L + L+ K R + N
Sbjct: 251 TTSIPEHKTSINNNKPEDTPTPSEN--VHLSARQRNALKR--KARQMKN 295
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 258 (95.9 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 101/373 (27%), Positives = 164/373 (43%)
Query: 701 YIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHT 760
++ ++ K E +IP I+A+L+ +Q G+ W + + K K L IL
Sbjct: 71 FLEQLLDGKKLENYKIPVPINAELRKYQQDGVN--W---LAFLNKYK-----LHGILCDD 120
Query: 761 MGLGKTFQVIAFL----------YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
MGLGKT Q I L Y + +L+V P + +W E K+ E
Sbjct: 121 MGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSRE 180
Query: 811 -LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRN-LSFGKHVKDRNMAREICH 868
L PL + R R L + + + Y RN + F +++K C
Sbjct: 181 YLNPLH-YTGPPTERIR----LQHQVKRHNLIVASYDVVRNDIDFFRNIKFN-----YC- 229
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ DE H+IKN + ++A+KQ+ RI L+G+P+QNN++E + + DF+
Sbjct: 230 ---------ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMP 280
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
GFLG+ +F R+ PI + S+S + + L+ Q+ F+ R V +DL
Sbjct: 281 GFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDL 340
Query: 989 PPKTVFVITVKLSPLQRRLYKRFL------DLHGFTNDRVSNEKIRKS-------FFAGY 1035
PPK + LSPLQ +LY+ F D+ + +E+ K F
Sbjct: 341 PPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQAL 400
Query: 1036 QALAQIWNHPGIL 1048
Q L ++ NHP ++
Sbjct: 401 QYLRKLCNHPALV 413
Score = 228 (85.3 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 61/187 (32%), Positives = 95/187 (50%)
Query: 1138 LVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197
L+F Q LD++E L K P + RLDG +R +V RFN +
Sbjct: 476 LIFCQLKSMLDIVEHDLLKPHLPSVT---------YLRLDGSIPPGQRHSIVSRFNN--D 524
Query: 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 1257
+ L++T G LG+NL A+ V+ V+ WNP DLQA+ RA R GQ + V YRL+
Sbjct: 525 PSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLIT 584
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFGDDENPDPLTAVSKEN 1316
GT+EEKI Q K +A V+ ++ +++ +++L LF D + A + +
Sbjct: 585 RGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEK--ADTSTS 642
Query: 1317 GQGSSQN 1323
G+ S ++
Sbjct: 643 GKASMKS 649
Score = 46 (21.3 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 100 LEAAVEDEMTVYKEQWEAALDELETESAHLLEQL-DGAGIE 139
LEA + D + A L +L+ + H LEQL DG +E
Sbjct: 47 LEAGIPDPPNM-----SAELIQLKAKERHFLEQLLDGKKLE 82
Score = 37 (18.1 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 185 FLQTERPVRRRHGK 198
FL TER R+GK
Sbjct: 282 FLGTERQFAARYGK 295
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 276 (102.2 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 105/383 (27%), Positives = 177/383 (46%)
Query: 640 DDAELGEETKRKIAIEKERQERLKSLQVQFSSKS---KLMNSVTLDGDLSA--GASIEVL 694
++ E + + K EK+ +E LKS ++ + K+ +L+ + T D D++ ++ E
Sbjct: 1055 EEEEESSDDEGKTEQEKKEEEELKSEALKKTQKAIELQLLKTKTFDRDVNKIKNSATEGG 1114
Query: 695 GDAITGYIV--NVVREKGEEAVRIPSSI------SAKLKAHQVVGIRFMWENIIQSIRKV 746
G+ I + + + G + + SSI + LK ++ + V
Sbjct: 1115 GETIPESLAVSDKMMVDGLPMIDMNSSIPPGFSTADTLKQPTILNADLKPYQLKGMTWIV 1174
Query: 747 KSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 806
D+G+ ILA MGLGKT Q IA L N+ LIVTP + LHNWK EF K+
Sbjct: 1175 NLYDQGINGILADEMGLGKTIQSIAVLAHLAEEKNIW-GPFLIVTPKSTLHNWKNEFAKF 1233
Query: 807 RPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREI 866
P+ K + + ++ +R + W K + F L +V R+ +
Sbjct: 1234 VPA-FKVIPYWG----TQQQRTTIRKYWNPKK--LYHRNSPFHVLITSYNVIVRD--EKY 1284
Query: 867 CHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV 926
H L+ +V DEAH IK++ ++ + L C+ R+ LTG+P+QN++ E + ++ F+
Sbjct: 1285 FHRLRW--QYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPIQNSMAELWALLHFI 1342
Query: 927 REGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK 986
F S EF F IEN H S + R H++ LK F+ R V+
Sbjct: 1343 MPTFFDSHDEFAEWFSKDIEN--HAMSQGGLNEHQLNRLHMI---LKPFMLRRIKRDVEN 1397
Query: 987 DLPPKTVFVITVKLSPLQRRLYK 1009
++P KT + L+ Q++LY+
Sbjct: 1398 EMPSKTEVEVYCNLTHRQKKLYQ 1420
Score = 239 (89.2 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 62/169 (36%), Positives = 96/169 (56%)
Query: 1112 KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1171
K L+ SGK+ +L +L G + L++SQ ++++E ++ +++K K
Sbjct: 1761 KSLNDSGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFM-----------IFRKYK 1809
Query: 1172 DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNP 1231
+ RLDG ++ +R+ +V+ F + + L+STRA +GINL SA+ VI D WNP
Sbjct: 1810 -YLRLDGSSKLDDRRDMVDDFQS--DPSIFAFLLSTRACGIGINLTSADTVIFYDSDWNP 1866
Query: 1232 TYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVV 1280
T D QA RA R GQT+PV YRL+ T+EEKI KR K + + V+
Sbjct: 1867 TVDEQAQDRAHRLGQTRPVTVYRLITKNTIEEKILKRAKQKHQIQSIVI 1915
Score = 42 (19.8 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 28/128 (21%), Positives = 50/128 (39%)
Query: 288 DDPFVADAI-ANEKELA----LSEEQRKKFRKVKEEDDANMDXXXXXXXXXXXXXXISKQ 342
DDP DA A L + EQ KK ++ ++DD ++
Sbjct: 1012 DDPSSGDATPATIGSLMNGSQMPTEQNKKIKEKNDQDDNESSSEEEEESSDDEGKTEQEK 1071
Query: 343 KEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLES-SVK 401
KE + ++ +T+ ++ L KT D D+ N ET + ES +V
Sbjct: 1072 KEEEELK---SEALKKTQKAIELQ--LLKTKTFDRDVNKIKNSATEGGGET-IPESLAVS 1125
Query: 402 ERSLSNGI 409
++ + +G+
Sbjct: 1126 DKMMVDGL 1133
Score = 42 (19.8 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 641 DAELGEETKRKIAIE--KERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
+ E + KR+ ++ K +Q +L L Q S M S LD S A+ +G +
Sbjct: 970 EKEEANQRKREEEVQEAKRQQRKLNFLISQTELYSHFM-SKKLDDPSSGDATPATIGSLM 1028
Query: 699 TG 700
G
Sbjct: 1029 NG 1030
Score = 42 (19.8 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 654 IEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEA 713
+ + L + + SSK KL +S++ LS+ + + AI+ I + K +
Sbjct: 437 LSSSSNQGLPPISLSSSSKHKLSSSLSSSSSLSSSTN-QGASSAISSSISVLSSPKQSPS 495
Query: 714 VRIPSSISAKL 724
++ SS + L
Sbjct: 496 MKSMSSSNPAL 506
Score = 38 (18.4 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 450 DEADVVKDECSTKLEDHSVSPENINDAATDNSLH 483
D D + S +E+H++S +N+ N LH
Sbjct: 1348 DSHDEFAEWFSKDIENHAMSQGGLNEHQL-NRLH 1380
Score = 38 (18.4 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 981 MNVVKKDLP 989
M ++KKDLP
Sbjct: 890 MKIIKKDLP 898
Score = 37 (18.1 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 355 SAVETRPLVDASKSLSNKKTDDGDMPGNNN 384
S+ ++R D + S SN ++ + NNN
Sbjct: 289 SSRDSRSDRDRTSSSSNNNNNNNNNNNNNN 318
Score = 37 (18.1 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 379 MPGNNNEVALQNL-ETGVL 396
+P ++N++ L NL E G L
Sbjct: 1723 LPPSSNQIVLDNLKENGGL 1741
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 291 (107.5 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 92/302 (30%), Positives = 143/302 (47%)
Query: 753 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 812
L ILA MGLGKT Q +A L + L + LIV P +V+ NW E K+ P
Sbjct: 681 LNGILADDMGLGKTIQTLAHLLIEKQQGRL-TKPILIVAPTSVIFNWANEIDKFTPQ--- 736
Query: 813 PLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 872
L +L R + L + G + S+ KD + H
Sbjct: 737 -LSYQVLHGNKRHEQFGCLEG--VENGENQVDIII---TSYALITKD------LAHYTDR 784
Query: 873 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 932
LV DEAH IKNT+ QA +K Q ++ LTG+P++N+L E++ +F+ GFLG
Sbjct: 785 KFYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLG 844
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 992
+F F+ PIE +H E +++NQR +K F+ R + + +LPPKT
Sbjct: 845 GQRQFTKLFRTPIE--KH--GELERKQLLNQR-------IKPFILRRTKDKIATELPPKT 893
Query: 993 VFVITVKLSPLQRRLYKRF-LDLHGFTNDRVSNEKIRKSFFAGYQALA---QIWNHPGIL 1048
+ T+++ Q LY+ L + D ++++ +++S AL Q+ NHP +L
Sbjct: 894 EIIQTLRIEGKQAELYESVRLAMDSRLKDIIADKGLKRSQIEVLDALLKLRQVCNHPKLL 953
Query: 1049 QL 1050
+L
Sbjct: 954 KL 955
Score = 199 (75.1 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 48/121 (39%), Positives = 71/121 (58%)
Query: 1163 QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1222
+ +L G + +L G T ++RQ++V++F V LIS RAG +G+NL +A+ V
Sbjct: 998 EDELIDAGIGYVKLTGST--TKRQEVVDKFQRG---EVPVFLISLRAGGVGLNLTAADTV 1052
Query: 1223 IIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282
I D WNP + QA RA+R GQ KPVF Y+L+ ++EEKI K Q K LA ++
Sbjct: 1053 IHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQKIQQNKAELAKALLSE 1112
Query: 1283 Q 1283
+
Sbjct: 1113 E 1113
Score = 115 (45.5 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 714 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 773
+ +P ++A L+ +Q G+ W +Q +R+ + L ILA MGLGKT Q +A L
Sbjct: 652 IPVPEGLNATLRTYQHQGLN--W---LQFLREYQ-----LNGILADDMGLGKTIQTLAHL 701
Query: 774 YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
+ L + LIV P +V+ NW E K+ P
Sbjct: 702 LIEKQQGRL-TKPILIVAPTSVIFNWANEIDKFTP 735
Score = 60 (26.2 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 1112 KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1171
K+++ S K+ L++ L + G K L+FSQ L LIE +L G
Sbjct: 959 KKVNQSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIE------------DELIDAGI 1006
Query: 1172 DWYRLDGRTESSERQKLVERF 1192
+ +L G T ++RQ++V++F
Sbjct: 1007 GYVKLTGST--TKRQEVVDKF 1025
Score = 38 (18.4 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 910 SPLQNNLMEYYCMVDFVREGFLGSSHE 936
+P+ +N Y V+F +G L + H+
Sbjct: 345 TPVASNRQTGYVQVNFSYQGNLVNPHD 371
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 291 (107.5 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 92/302 (30%), Positives = 143/302 (47%)
Query: 753 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 812
L ILA MGLGKT Q +A L + L + LIV P +V+ NW E K+ P
Sbjct: 681 LNGILADDMGLGKTIQTLAHLLIEKQQGRL-TKPILIVAPTSVIFNWANEIDKFTPQ--- 736
Query: 813 PLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 872
L +L R + L + G + S+ KD + H
Sbjct: 737 -LSYQVLHGNKRHEQFGCLEG--VENGENQVDIII---TSYALITKD------LAHYTDR 784
Query: 873 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 932
LV DEAH IKNT+ QA +K Q ++ LTG+P++N+L E++ +F+ GFLG
Sbjct: 785 KFYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLG 844
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 992
+F F+ PIE +H E +++NQR +K F+ R + + +LPPKT
Sbjct: 845 GQRQFTKLFRTPIE--KH--GELERKQLLNQR-------IKPFILRRTKDKIATELPPKT 893
Query: 993 VFVITVKLSPLQRRLYKRF-LDLHGFTNDRVSNEKIRKSFFAGYQALA---QIWNHPGIL 1048
+ T+++ Q LY+ L + D ++++ +++S AL Q+ NHP +L
Sbjct: 894 EIIQTLRIEGKQAELYESVRLAMDSRLKDIIADKGLKRSQIEVLDALLKLRQVCNHPKLL 953
Query: 1049 QL 1050
+L
Sbjct: 954 KL 955
Score = 199 (75.1 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 48/121 (39%), Positives = 71/121 (58%)
Query: 1163 QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV 1222
+ +L G + +L G T ++RQ++V++F V LIS RAG +G+NL +A+ V
Sbjct: 998 EDELIDAGIGYVKLTGST--TKRQEVVDKFQRG---EVPVFLISLRAGGVGLNLTAADTV 1052
Query: 1223 IIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282
I D WNP + QA RA+R GQ KPVF Y+L+ ++EEKI K Q K LA ++
Sbjct: 1053 IHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQKIQQNKAELAKALLSE 1112
Query: 1283 Q 1283
+
Sbjct: 1113 E 1113
Score = 115 (45.5 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 714 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 773
+ +P ++A L+ +Q G+ W +Q +R+ + L ILA MGLGKT Q +A L
Sbjct: 652 IPVPEGLNATLRTYQHQGLN--W---LQFLREYQ-----LNGILADDMGLGKTIQTLAHL 701
Query: 774 YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
+ L + LIV P +V+ NW E K+ P
Sbjct: 702 LIEKQQGRL-TKPILIVAPTSVIFNWANEIDKFTP 735
Score = 60 (26.2 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 1112 KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK 1171
K+++ S K+ L++ L + G K L+FSQ L LIE +L G
Sbjct: 959 KKVNQSAKLDYLMETLPEQIDEGRKILIFSQFTSMLSLIE------------DELIDAGI 1006
Query: 1172 DWYRLDGRTESSERQKLVERF 1192
+ +L G T ++RQ++V++F
Sbjct: 1007 GYVKLTGST--TKRQEVVDKF 1025
Score = 38 (18.4 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 910 SPLQNNLMEYYCMVDFVREGFLGSSHE 936
+P+ +N Y V+F +G L + H+
Sbjct: 345 TPVASNRQTGYVQVNFSYQGNLVNPHD 371
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 230 (86.0 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 62/177 (35%), Positives = 91/177 (51%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
+GK LL +L G + L+F Q +D++E +L K + RL
Sbjct: 790 AGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRM------------KDLKYMRL 837
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T++ ER +++ FN P + C L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 838 DGSTKTEERTEMLNAFNAP-DSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 896
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEE 1293
A RA R GQ V RL+ ++EE I +R + K + +V+ + + EE
Sbjct: 897 AQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEE 953
Score = 198 (74.8 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 59/191 (30%), Positives = 92/191 (48%)
Query: 877 LVCDEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KN ++ + + + + R+ LTG+PLQNNL E + +++FV S+
Sbjct: 594 MIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAK 653
Query: 936 EFRNRFQNPIEN-G--QHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 992
F + F P N G + T E+ ++ +R H + L+ F+ R V+KDLP K
Sbjct: 654 TFEDWFNTPFANTGTQEKLELTEEETLLIIRRLH---KVLRPFLLRRLKKEVEKDLPDKV 710
Query: 993 VFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ----ALAQIWNHPGIL 1048
VI KLS LQ++LY++ L H E K G L +I NHP +
Sbjct: 711 EKVIKCKLSGLQQQLYQQMLK-HNALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVF 769
Query: 1049 QLTKDKGYPSR 1059
+ PSR
Sbjct: 770 DEVEGVVNPSR 780
Score = 117 (46.2 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 46/173 (26%), Positives = 80/173 (46%)
Query: 646 EETKRKIAIEKERQERLKSLQVQ----FSSKSKLMNSVTLDGDLSAGASIEVLGDAI--- 698
EE K+ +++ + R+ L Q S S+ + + + + G ++ + D
Sbjct: 386 EEAYLKL-LDQTKDTRITQLLRQTNSFLDSLSEAVRAQQNEAKILHGEEVQPITDEEREK 444
Query: 699 TGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 756
T Y + + ++EK ++ I + LK +Q+ G+ +M V + L I
Sbjct: 445 TDYYEVAHRIKEKIDKQPSI--LVGGTLKEYQLRGLEWM----------VSLYNNHLNGI 492
Query: 757 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
LA MGLGKT Q I+ L T + V + L++ P++ + NW EF KW PS
Sbjct: 493 LADEMGLGKTIQSIS-LITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPS 544
Score = 44 (20.5 bits), Expect = 6.5e-29, Sum P(3) = 6.5e-29
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 644 LGEETKRKIAIEKERQERLKSLQ 666
L EE +R+ +EK ++ER LQ
Sbjct: 303 LAEELERQQLLEKRKKERNLHLQ 325
Score = 42 (19.8 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 80 LVKLKNEVREELAQA--LHGDDLEAAVEDEM--TVYKEQWEAALDELETESAHL----LE 131
L L VR + +A LHG++++ ++E T Y E ++++ + + L L+
Sbjct: 412 LDSLSEAVRAQQNEAKILHGEEVQPITDEEREKTDYYEVAHRIKEKIDKQPSILVGGTLK 471
Query: 132 QLDGAGIE-LPSLY 144
+ G+E + SLY
Sbjct: 472 EYQLRGLEWMVSLY 485
Score = 38 (18.4 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 1254 RLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKE 1292
RL +GT E +I + T E +++ + +E
Sbjct: 1094 RLRQNGTKENEIETLENTPEASETSLIENNSFTAAVDEE 1132
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 252 (93.8 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 70/197 (35%), Positives = 101/197 (51%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
++ SGK+ LL +L G L+FSQ LD+++ YL +G +
Sbjct: 332 VEASGKLSLLDSMLAYLQEGGHHVLLFSQMTRMLDILQDYLEY------------RGYSY 379
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG ER ++ F+ K V L+ST+AG +G+NL +A+ VI VDG +NP
Sbjct: 380 ERLDGSVRGEERNLAIKNFS---TKDVFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQN 436
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR------QQVHR 1287
DLQA RA R GQT+PV RL+ T+EE IY R V+K L V++ Q
Sbjct: 437 DLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIEEGRFSLLDQAQS 496
Query: 1288 TISKEEMLHLFEFGDDE 1304
S ++ + +FG D+
Sbjct: 497 AASGLQLSEILKFGVDK 513
Score = 168 (64.2 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 52/155 (33%), Positives = 78/155 (50%)
Query: 876 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLGSS 934
ILV DEAH +KN + Q LK+ R+ LTG+P+QNNL E Y ++ F++ FL +
Sbjct: 159 ILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSVFLPEA 218
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
E F N + Q + ++ L++ L+ F+ R V +LP KT
Sbjct: 219 VE---DFVNAYADIQTEPALVDE----------LHQVLQPFLLRRVKAEVAAELPKKTEL 265
Query: 995 VITVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKI 1027
V+ LS LQ+R YK L DL F D+ + ++
Sbjct: 266 VVFHGLSALQKRYYKAILMRDLDAFRTDQSTKTRL 300
Score = 117 (46.2 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 39/127 (30%), Positives = 63/127 (49%)
Query: 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 813
GCIL MGLGKT Q I+ L A S+ + L++ P+ VL NW+QE ++ PS
Sbjct: 55 GCILGDEMGLGKTCQTISLLAYARGSLKMN-GPFLVLCPLAVLENWRQELERFCPS---- 109
Query: 814 LRVFMLEDVSRDRRAELLAKWRA--KGGVFLIGYT-AFRNLSFGKHVKDRNMAREICHAL 870
L V +++RAEL ++ + V L Y ++ + K K + + + H L
Sbjct: 110 LSVICYTG-DKEKRAELQQNLKSDPRFHVLLTTYEMCLKDARYLKSWKWKILVVDEAHRL 168
Query: 871 QDGPDIL 877
++ +L
Sbjct: 169 KNQESLL 175
Score = 39 (18.8 bits), Expect = 6.3e-14, Sum P(3) = 6.3e-14
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 1250 VFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPL 1309
V+ Y + A T ++K+ + +T +G ++ H E +H E D + P
Sbjct: 940 VYFYNMAA--TEKKKLTRYLITYDGDEEDLMSSHVTHIVGEVESPVHKQELQDLLHQYPQ 997
Query: 1310 TAVSKEN 1316
+ K+N
Sbjct: 998 ALLVKKN 1004
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 258 (95.9 bits), Expect = 3.1e-36, Sum P(5) = 3.1e-36
Identities = 66/188 (35%), Positives = 99/188 (52%)
Query: 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 1177
GK+ L +L G + L+F+Q LD++E +L+ G L+ RLD
Sbjct: 2043 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY------HGHLY------LRLD 2090
Query: 1178 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQA 1237
G T +RQ L+ERFN +KR+ C ++STR+G +G+NL A+ V+ D WNPT D QA
Sbjct: 2091 GSTRVEQRQALMERFNA--DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQA 2148
Query: 1238 IYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLH- 1296
R R GQT+ V YRL++ T+EE I K+ K L ++ K++ +
Sbjct: 2149 QDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRE 2208
Query: 1297 LFEFGDDE 1304
LF+ +E
Sbjct: 2209 LFDMPLEE 2216
Score = 189 (71.6 bits), Expect = 3.1e-36, Sum P(5) = 3.1e-36
Identities = 54/171 (31%), Positives = 85/171 (49%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
L+ DEA IKN ++ Q+L QRR+ LTG+PLQN+LME + ++ F+ S E
Sbjct: 743 LILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHRE 802
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F+ F NP+ G S + ++ + L++ L+ F+ R V+K +P K VI
Sbjct: 803 FKEWFSNPL-TGMIEGSQEYNEGLVKR----LHKVLRPFLLRRVKVDVEKQMPKKYEHVI 857
Query: 997 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 1047
+LS QR LY F+ T + ++ S L ++ NHP +
Sbjct: 858 RCRLSKRQRCLYDDFM-AQTTTKETLATGHFM-SVINILMQLRKVCNHPNL 906
Score = 117 (46.2 bits), Expect = 3.1e-36, Sum P(5) = 3.1e-36
Identities = 38/135 (28%), Positives = 64/135 (47%)
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL-Y 774
IP + +L+ +Q +G+ ++ V +K L ILA MGLGKT Q I+ L +
Sbjct: 610 IPLLLRGQLREYQHIGLDWL----------VTMYEKKLNGILADEMGLGKTIQTISLLAH 659
Query: 775 TAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW 834
A N G LI+ P +V+ NW+ E +W PS ++ ++R+ + W
Sbjct: 660 LACEKGNWGPH--LIIVPTSVMLNWEMELKRWCPS----FKILTYYGAQKERKLKRQG-W 712
Query: 835 RAKGGVFLIGYTAFR 849
K F + T+++
Sbjct: 713 -TKPNAFHVCITSYK 726
Score = 48 (22.0 bits), Expect = 3.1e-36, Sum P(5) = 3.1e-36
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 449 SDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQS 486
S ++D V+D + ++HS E +A++ S +S
Sbjct: 494 SSQSDSVEDRSEDEEDEHSEEEETSGSSASEESESEES 531
Score = 44 (20.5 bits), Expect = 3.1e-36, Sum P(5) = 3.1e-36
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 98 DDLEAAVEDEMTVYKEQWEAALDELETESAHLLE 131
DD E +E +E AA ++LE E H +E
Sbjct: 399 DDEEFTANEEEAEDEEDTIAAEEQLEGEVDHAME 432
Score = 40 (19.1 bits), Expect = 7.9e-36, Sum P(5) = 7.9e-36
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 306 EEQRKKFRKVKEEDDANM 323
EEQR+K + + E+ A +
Sbjct: 174 EEQRQKEERARREEQAKL 191
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 264 (98.0 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 113/401 (28%), Positives = 179/401 (44%)
Query: 756 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLR 815
ILA MGLGKT Q IAFL + + G L+V P + + NW +EF +W PS + L
Sbjct: 496 ILADEMGLGKTVQAIAFLAHLYVTGDSGPH--LVVVPASTMDNWIREFNQWCPS-MNILL 552
Query: 816 VFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPD 875
+ ++ + R ++L K + V + Y N + +DR++ R + L +
Sbjct: 553 YYGSQEERKHLRYDILNKV-VEFNVIVTTY----NCAISS-AEDRSLFRRL--KL----N 600
Query: 876 ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-FLGSS 934
V DE HM+KN A Q L + + R+ LTG+P+QNNL+E +++FV F S+
Sbjct: 601 FAVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLLELMSLLNFVMPHMFSSST 660
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
E + F + + ST E +R + +K F+ R + V K LPPK
Sbjct: 661 SEIKRLFSSKAK------STDEQTIFEKERIAHAKQIMKPFILRRVKSEVLKQLPPKQDK 714
Query: 995 VITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK 1054
+ ++S Q +LY L+ + D + EK L ++ NHP + +
Sbjct: 715 IKFCQMSKKQEQLYSDLLNKLKKSID--ATEK-NSELCNVMMHLRKMANHPLLHRQYYTA 771
Query: 1055 GYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKE 1113
+ D N +I E M DF + + F + L +
Sbjct: 772 DRLRTMSKLMLKEPTHCDANPDLIFEDMEVMTDFELHRLCNEFTTLSQYK--LEKELI-- 827
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 1154
LD SGK +L +L+ GD+ ++FSQ LD+IE +L
Sbjct: 828 LD-SGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVFL 867
Score = 221 (82.9 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 63/154 (40%), Positives = 87/154 (56%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
LD SGK +L +L+ GD+ ++FSQ LD+IE +L Q + +
Sbjct: 828 LD-SGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVFLRH-----HQHR-------Y 874
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 875 VRLDGKTQISERIHLIDEFNTDMD--IFIFLLSTKAGGLGINLTSANIVILHDIDCNPYN 932
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 1267
D QA R R GQTK V +L+ GT+EE + K
Sbjct: 933 DKQAEDRCHRVGQTKEVKVIKLIGKGTIEESMLK 966
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 253 (94.1 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 70/209 (33%), Positives = 109/209 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
+GK VLL +L + G + L+FSQ LD++E + +G + R+
Sbjct: 939 AGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDV------------EGYKYERI 986
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG +RQ ++R+N P K+ L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 987 DGSITGQQRQDAIDRYNAPGAKQF-VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1045
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIY---KRQVTKEGLAARVVDRQQVHRTISKEE 1293
A RA R GQ V YR + G++EE+I K+++ L R + +++SK E
Sbjct: 1046 AFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTE 1105
Query: 1294 MLHLFEFGDDEN-PDPLTAVSKENGQGSS 1321
+ + +G +E + V +G+G+S
Sbjct: 1106 LDDVLRWGTEELFKEEEAPVEGADGEGTS 1134
Score = 229 (85.7 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 88/302 (29%), Positives = 138/302 (45%)
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
G ILA MGLGKT Q + FLYT M+ + LI P++ + NW++E W P
Sbjct: 634 GTDAILADEMGLGKTVQSLTFLYTLMKEGHTK-GPFLIAAPLSTIINWEREAELWCPDFY 692
Query: 812 KPLRVFMLEDVSRDRRAEL-LAKWRAKGGVFLIGYTAFRNLSFGKHV-----KDRNMARE 865
V E R E +GG + NL F HV + NM +
Sbjct: 693 VVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKF--HVLLTSYECINMDKA 750
Query: 866 ICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDF 925
I ++ LV DEAH +KN ++ + L++ Q R+ LTG+PLQNNL E + +++F
Sbjct: 751 ILSSIDWAA--LVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNF 808
Query: 926 VREGFLGSSHEFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 983
+ +RF N +E+ + + + ED +I ++ H L ++R+ +V
Sbjct: 809 LAP----------DRF-NQLESFTAEFSEISKED-QI--EKLHNLLGP--HMLRRLKADV 852
Query: 984 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWN 1043
+ +P K ++ V+LS +Q++ YK L F V N + S L + N
Sbjct: 853 LT-GMPSKQELIVRVELSAMQKKYYKNILT-RNFDALNVKNGGTQMSLINIIMELKKCCN 910
Query: 1044 HP 1045
HP
Sbjct: 911 HP 912
Score = 63 (27.2 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 28/126 (22%), Positives = 51/126 (40%)
Query: 464 EDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEK 523
E+H EN D L + Y AC + +E P + C C+
Sbjct: 262 ENHQ---ENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWS---CPHCEEHGPD 315
Query: 524 KMHVKD--ADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
+ V++ A + YC C +S+++ C +C + + C+ ++E E + SC +C
Sbjct: 316 VLIVEEEPAKANMDYCRICKETSNILLCDTCPSSYHAYCIDPPLTEI---PEGEWSCPRC 372
Query: 582 CCCSPS 587
P+
Sbjct: 373 IIPEPA 378
Score = 41 (19.5 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 868 HALQDGPDILVCDE 881
H + GPD+L+ +E
Sbjct: 308 HCEEHGPDVLIVEE 321
Score = 41 (19.5 bits), Expect = 3.5e-14, Sum P(3) = 3.5e-14
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 1156 KLPRPGKQGKLWKKGKDWYRL 1176
K+ R GK+ ++W + D++ L
Sbjct: 1504 KVARNGKEYEIWHRRHDFWLL 1524
Score = 39 (18.8 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 1082 RNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELD 1115
R +N K+ + K W +L +EH E D
Sbjct: 505 RIINHLSYAKSQQDYLVK--WKELSYEHATWERD 536
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 253 (94.1 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 70/209 (33%), Positives = 109/209 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
+GK VLL +L + G + L+FSQ LD++E + +G + R+
Sbjct: 939 AGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDV------------EGYKYERI 986
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG +RQ ++R+N P K+ L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 987 DGSITGQQRQDAIDRYNAPGAKQF-VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1045
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIY---KRQVTKEGLAARVVDRQQVHRTISKEE 1293
A RA R GQ V YR + G++EE+I K+++ L R + +++SK E
Sbjct: 1046 AFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTE 1105
Query: 1294 MLHLFEFGDDEN-PDPLTAVSKENGQGSS 1321
+ + +G +E + V +G+G+S
Sbjct: 1106 LDDVLRWGTEELFKEEEAPVEGADGEGTS 1134
Score = 229 (85.7 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 88/302 (29%), Positives = 138/302 (45%)
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
G ILA MGLGKT Q + FLYT M+ + LI P++ + NW++E W P
Sbjct: 634 GTDAILADEMGLGKTVQSLTFLYTLMKEGHTK-GPFLIAAPLSTIINWEREAELWCPDFY 692
Query: 812 KPLRVFMLEDVSRDRRAEL-LAKWRAKGGVFLIGYTAFRNLSFGKHV-----KDRNMARE 865
V E R E +GG + NL F HV + NM +
Sbjct: 693 VVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKF--HVLLTSYECINMDKA 750
Query: 866 ICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDF 925
I ++ LV DEAH +KN ++ + L++ Q R+ LTG+PLQNNL E + +++F
Sbjct: 751 ILSSIDWAA--LVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNF 808
Query: 926 VREGFLGSSHEFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 983
+ +RF N +E+ + + + ED +I ++ H L ++R+ +V
Sbjct: 809 LAP----------DRF-NQLESFTAEFSEISKED-QI--EKLHNLLGP--HMLRRLKADV 852
Query: 984 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWN 1043
+ +P K ++ V+LS +Q++ YK L F V N + S L + N
Sbjct: 853 LT-GMPSKQELIVRVELSAMQKKYYKNILT-RNFDALNVKNGGTQMSLINIIMELKKCCN 910
Query: 1044 HP 1045
HP
Sbjct: 911 HP 912
Score = 63 (27.2 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 28/126 (22%), Positives = 51/126 (40%)
Query: 464 EDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEK 523
E+H EN D L + Y AC + +E P + C C+
Sbjct: 262 ENHQ---ENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWS---CPHCEEHGPD 315
Query: 524 KMHVKD--ADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
+ V++ A + YC C +S+++ C +C + + C+ ++E E + SC +C
Sbjct: 316 VLIVEEEPAKANMDYCRICKETSNILLCDTCPSSYHAYCIDPPLTEI---PEGEWSCPRC 372
Query: 582 CCCSPS 587
P+
Sbjct: 373 IIPEPA 378
Score = 41 (19.5 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 868 HALQDGPDILVCDE 881
H + GPD+L+ +E
Sbjct: 308 HCEEHGPDVLIVEE 321
Score = 41 (19.5 bits), Expect = 3.5e-14, Sum P(3) = 3.5e-14
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 1156 KLPRPGKQGKLWKKGKDWYRL 1176
K+ R GK+ ++W + D++ L
Sbjct: 1504 KVARNGKEYEIWHRRHDFWLL 1524
Score = 39 (18.8 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 1082 RNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELD 1115
R +N K+ + K W +L +EH E D
Sbjct: 505 RIINHLSYAKSQQDYLVK--WKELSYEHATWERD 536
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 254 (94.5 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 82/307 (26%), Positives = 150/307 (48%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
++G+ ILA MGLGKT Q I+ L + N+ L+VTP + LHNW+QE K+ P
Sbjct: 688 EQGINGILADEMGLGKTVQSISVLAYLAETYNMW-GPFLVVTPASTLHNWQQEITKFVP- 745
Query: 810 ELKPLRVFMLEDVSRDRRAELLAK-WRAKGGVFLIGYTAFRNLSFGKHVKDRNM-AREIC 867
E K L + ++DR+ +L K W K + Y ++ F V + +I
Sbjct: 746 EFKVLPYW---GNAKDRK--ILRKFWDRKS----LRYD--KDSPFHVLVTSYQLIVADIA 794
Query: 868 HALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ + ++ DEA IK++ + ++L + C+ R+ LTG+P+QN++ E + ++ F+
Sbjct: 795 YFQKMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIM 854
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 987
S EF + F IE+ +N++ ++ ++ +R H++ LK F+ R V+ +
Sbjct: 855 PSIFDSHDEFSDWFAKDIESHAQSNTSLDEQQL--RRLHMI---LKPFMLRRIKKNVQSE 909
Query: 988 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRV----SNEKIRKSFFAGY-QALAQIW 1042
L K + L+ Q++LY++ ++ + SN S A ++
Sbjct: 910 LGDKVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELESNSTSSDSSLANLVMQFRKVC 969
Query: 1043 NHPGILQ 1049
NHP + +
Sbjct: 970 NHPDLFE 976
Score = 235 (87.8 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 61/164 (37%), Positives = 89/164 (54%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ L ++L G + L++ Q + + E YL+ +K K + RL
Sbjct: 1235 SGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLA-----------YKSYK-YIRL 1282
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T R+++V+ + N + ++STRAG LG+NL SA+ VI D WNPT D Q
Sbjct: 1283 DGSTTIESRREMVQAWQT--NPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQ 1340
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVV 1280
A+ RA R GQTK V +RL+ T+E+KI +R KE + VV
Sbjct: 1341 AMDRAHRIGQTKQVKVFRLVTRNTIEQKILERAKEKEEIQKLVV 1384
Score = 129 (50.5 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 36/105 (34%), Positives = 56/105 (53%)
Query: 710 GEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV 769
G+ + P+ + LK +Q+ G+ ++ N+ + +G+ ILA MGLGKT Q
Sbjct: 658 GDITIPQPNMLKCTLKEYQLKGLNWL-ANLYE---------QGINGILADEMGLGKTVQS 707
Query: 770 IAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPL 814
I+ L + N+ L+VTP + LHNW+QE K+ P E K L
Sbjct: 708 ISVLAYLAETYNMW-GPFLVVTPASTLHNWQQEITKFVP-EFKVL 750
Score = 37 (18.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 799 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVK 858
WK+ R +LK L D ++ E AK +++ FLI T + GK +K
Sbjct: 505 WKRNERLER--DLKKKHEKELLDKAKKEEEEREAKRQSRKLNFLITQTELYSHFIGKKIK 562
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 268 (99.4 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 74/208 (35%), Positives = 108/208 (51%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ L +LT + G + L++SQ +DL+E Y+ +++K + RL
Sbjct: 1097 SGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYM-----------VYRK-HTYMRL 1144
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG ++ SER+ +V F + L+STRAG LGINL +A+ VI D WNPT D Q
Sbjct: 1145 DGSSKISERRDMVADFQT--RNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1202
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR-TISKEEML 1295
A+ RA R GQTK V YRL+ GT+EE+I +R K + V+ T+ +E++
Sbjct: 1203 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1262
Query: 1296 HLFEFGDDENPDPLTAVSKENGQGSSQN 1323
L D+E L +E Q N
Sbjct: 1263 SLL-LDDEELEKKLRLRQEEKRQQEESN 1289
Score = 152 (58.6 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 37/133 (27%), Positives = 69/133 (51%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
+V DEA +K++ + + L Q +C+ R+ LTG+P+QN + E + ++ F+ S E
Sbjct: 645 MVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEE 704
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F F IE+ S ++ ++ R H++ LK F+ R V+ +L K ++
Sbjct: 705 FNEWFSKDIESHAENKSAIDENQL--SRLHMI---LKPFMLRRIKKDVENELSDKIEILM 759
Query: 997 TVKLSPLQRRLYK 1009
+L+ Q+ LY+
Sbjct: 760 YCQLTSRQKLLYQ 772
Score = 122 (48.0 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 42/156 (26%), Positives = 73/156 (46%)
Query: 658 RQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGY-----IVNVVREKGEE 712
+ + LK+ + + S D S A++ + +G+ + N GE+
Sbjct: 450 KAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAADKSGSGFGESYSLANPSIRAGED 509
Query: 713 AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF 772
+ P+ + KLK +Q+ G+ ++ N+ + +G+ ILA MGLGKT Q IA
Sbjct: 510 IPQ-PTIFNGKLKGYQLKGMNWL-ANLYE---------QGINGILADEMGLGKTVQSIAL 558
Query: 773 LYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
L N+ LI++P + L+NW QEF ++ P
Sbjct: 559 LAHLAERENIW-GPFLIISPASTLNNWHQEFTRFVP 593
Score = 51 (23.0 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 963 QRSHILYEQLKGFVQRMDMNVVKKDLP 989
++ H+ EQL +++ +++VKK+LP
Sbjct: 266 KKKHLSIEQLNARRRKVWLSIVKKELP 292
Score = 47 (21.6 bits), Expect = 7.9e-18, Sum P(2) = 7.9e-18
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 644 LGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSV 679
L + K KI+IE Q + S Q ++ S LMN V
Sbjct: 770 LYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLV 805
Score = 37 (18.1 bits), Expect = 6.3e-12, Sum P(3) = 6.3e-12
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 1108 EHTYKELDYSGKM 1120
+HTY LD S K+
Sbjct: 1138 KHTYMRLDGSSKI 1150
Score = 37 (18.1 bits), Expect = 6.3e-12, Sum P(3) = 6.3e-12
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 1074 NVVIGEKPRNMNDFLQGKNDDGFFQKD 1100
N+VI P N L DD F D
Sbjct: 1321 NLVIPFVPAADNSNLSADGDDSFISVD 1347
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 291 (107.5 bits), Expect = 5.1e-36, Sum P(2) = 5.1e-36
Identities = 74/190 (38%), Positives = 106/190 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKMV+L +L G + L+FSQ LD++E Y +W+ ++ RL
Sbjct: 203 SGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------MWRN-YEYCRL 250
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG+T ERQ + +NEP N ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 251 DGQTPHDERQDSINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQ 309
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-----QQVHRTISK 1291
A+ RA R GQTK V +R + T+EE+I +R K L + V+ + Q +++ I K
Sbjct: 310 AMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK-IGK 368
Query: 1292 EEMLHLFEFG 1301
+EML + G
Sbjct: 369 DEMLQMIRHG 378
Score = 188 (71.2 bits), Expect = 5.1e-36, Sum P(2) = 5.1e-36
Identities = 57/171 (33%), Positives = 88/171 (51%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
LV DEAH IKN ++ ++ +++ K R+ LTG+PLQNNL E + +++F+ S+ +
Sbjct: 26 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADD 85
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F + F TN+ D K++ +R H++ L+ F+ R V+K LPPK I
Sbjct: 86 FDSWFD--------TNNCLGDKKLV-ERLHMV---LRPFLLRRIKADVEKSLPPKKEVKI 133
Query: 997 TVKLSPLQRRLYKRFL--DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
V LS +QR Y R L D+ N +K+R L + NHP
Sbjct: 134 YVGLSKMQREWYTRILMKDID-ILNSAGKMDKMR--LLNILMQLRKCCNHP 181
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 237 (88.5 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 72/210 (34%), Positives = 106/210 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK VLL +L + G + L+FSQ LD++E +G + R+
Sbjct: 925 SGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEY------------EGYRYERI 972
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG RQ ++R+N P ++ L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 973 DGSIMGQMRQDAIDRYNAPGAQQF-IFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1031
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIY---KRQVTKEGLAARVVDRQQVHRTISKEE 1293
A RA R GQ V YR + ++EEKI K+++ L R + +T+SK E
Sbjct: 1032 AFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVVRAGLGGKEGKTMSKTE 1091
Query: 1294 MLHLFEFGDDEN-PDPLTAVSKENGQGSSQ 1322
+ + +G +E + L A G+GS +
Sbjct: 1092 LDDVLRWGTEELFSEDLDAAE---GEGSEK 1118
Score = 227 (85.0 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 93/348 (26%), Positives = 155/348 (44%)
Query: 706 VREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGK 765
+R+K E + KL +Q+ G+ W +R S G ILA MGLGK
Sbjct: 584 IRKKYEVQPDYVTETGGKLHPYQLEGLN--W------LRHCWSN--GTDAILADEMGLGK 633
Query: 766 TFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED---V 822
T Q + FLY+ M+ + LI P++ + NW++E +W P + + L D V
Sbjct: 634 TVQSLTFLYSLMKEGHCK-GPFLIAAPLSTIINWEREAEQWCP-DFYVVTYVGLRDARVV 691
Query: 823 SRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV-----KDRNMAREICHALQDGPDIL 877
R+ + + + G N+ F HV + NM + I +++ G L
Sbjct: 692 LREHEFSFV-EGAVRSGPKASKMKTTENMKF--HVLLTSYETINMDKTILSSIEWGA--L 746
Query: 878 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 937
V DEAH +KN ++ + L + R+ LTG+PLQNNL E + +++F+ + F
Sbjct: 747 VVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAF 806
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 997
F N S++ +I ++ H L ++R+ +V+ +P K+ ++
Sbjct: 807 TAEF----------NEISKEDQI--EKLHNLLGP--HMLRRLKADVLT-GMPSKSELIVR 851
Query: 998 VKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
V+LS +Q++ YK L F V N + S L + NHP
Sbjct: 852 VELSAMQKKWYKNILT-RNFDALNVKNGGTQMSLMNVLMELKKCCNHP 898
Score = 80 (33.2 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 518 KCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQAS 577
K LEK ++ D YC C + +L+ C +C + T C+ N+ E E S
Sbjct: 244 KAKLEKGEEAENND----YCEECKQDGELLLCDTCPRAYHTVCIDENMEEP---PEGDWS 296
Query: 578 CWQCCCCSPSLLK 590
C C P ++K
Sbjct: 297 CAHCIEHGPEVVK 309
Score = 62 (26.9 bits), Expect = 4.6e-34, Sum P(3) = 4.6e-34
Identities = 30/127 (23%), Positives = 48/127 (37%)
Query: 462 KLEDHSVSPEN--INDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKC 519
KLE + N + D L + Y T C + +E P + C +
Sbjct: 246 KLEKGEEAENNDYCEECKQDGELLLCDTCPRAYHTVCIDENMEEPPEGDWSCAHCIEHGP 305
Query: 520 LLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCW 579
+ K+ K D E +C C + +L+ C SC F C+ ++E + E SC
Sbjct: 306 EVVKEEPAKQND--E-FCKICKETENLLLCDSCVCSFHAYCIDPPLTE--VPKEETWSCP 360
Query: 580 QCCCCSP 586
+C P
Sbjct: 361 RCETVKP 367
Score = 45 (20.9 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1156 KLPRPGKQGKLWKKGKDWYRLDG 1178
K+ R GK+ ++W + D++ L G
Sbjct: 1517 KVARNGKEYEIWYRRHDYWLLAG 1539
Score = 40 (19.1 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 14/68 (20%), Positives = 32/68 (47%)
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTA-VSKEN 1316
H T + + + + ++ + R+ V R + + E + ++ E D + A + +
Sbjct: 1361 HDTFNDGVPREGLNRQHVLGRIGLLSLVRRKVQEFEQYN-GQWSMPEIQDEVLAKAANGS 1419
Query: 1317 GQGSSQNT 1324
QGSS++T
Sbjct: 1420 AQGSSRST 1427
Score = 39 (18.8 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 654 IEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEA 713
+ KER +L++ +F+ SK L L + D +TG + K E
Sbjct: 795 LSKERFNQLEAFTAEFNEISKEDQIEKLHNLLGPHMLRRLKADVLTG-----MPSKSELI 849
Query: 714 VRIPSSISAK 723
VR+ S K
Sbjct: 850 VRVELSAMQK 859
Score = 37 (18.1 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 1091 KNDDGFFQKDWWNDLLHEHTYKE 1113
K D+ D+W LL H Y++
Sbjct: 1190 KEDEKEPDPDYWEKLLKHH-YEQ 1211
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 237 (88.5 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 72/210 (34%), Positives = 106/210 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK VLL +L + G + L+FSQ LD++E +G + R+
Sbjct: 925 SGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEY------------EGYRYERI 972
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG RQ ++R+N P ++ L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 973 DGSIMGQMRQDAIDRYNAPGAQQF-IFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1031
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIY---KRQVTKEGLAARVVDRQQVHRTISKEE 1293
A RA R GQ V YR + ++EEKI K+++ L R + +T+SK E
Sbjct: 1032 AFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVVRAGLGGKEGKTMSKTE 1091
Query: 1294 MLHLFEFGDDEN-PDPLTAVSKENGQGSSQ 1322
+ + +G +E + L A G+GS +
Sbjct: 1092 LDDVLRWGTEELFSEDLDAAE---GEGSEK 1118
Score = 227 (85.0 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 93/348 (26%), Positives = 155/348 (44%)
Query: 706 VREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGK 765
+R+K E + KL +Q+ G+ W +R S G ILA MGLGK
Sbjct: 584 IRKKYEVQPDYVTETGGKLHPYQLEGLN--W------LRHCWSN--GTDAILADEMGLGK 633
Query: 766 TFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLED---V 822
T Q + FLY+ M+ + LI P++ + NW++E +W P + + L D V
Sbjct: 634 TVQSLTFLYSLMKEGHCK-GPFLIAAPLSTIINWEREAEQWCP-DFYVVTYVGLRDARVV 691
Query: 823 SRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV-----KDRNMAREICHALQDGPDIL 877
R+ + + + G N+ F HV + NM + I +++ G L
Sbjct: 692 LREHEFSFV-EGAVRSGPKASKMKTTENMKF--HVLLTSYETINMDKTILSSIEWGA--L 746
Query: 878 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 937
V DEAH +KN ++ + L + R+ LTG+PLQNNL E + +++F+ + F
Sbjct: 747 VVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAF 806
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIT 997
F N S++ +I ++ H L ++R+ +V+ +P K+ ++
Sbjct: 807 TAEF----------NEISKEDQI--EKLHNLLGP--HMLRRLKADVLT-GMPSKSELIVR 851
Query: 998 VKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
V+LS +Q++ YK L F V N + S L + NHP
Sbjct: 852 VELSAMQKKWYKNILT-RNFDALNVKNGGTQMSLMNVLMELKKCCNHP 898
Score = 80 (33.2 bits), Expect = 6.3e-36, Sum P(3) = 6.3e-36
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 518 KCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQAS 577
K LEK ++ D YC C + +L+ C +C + T C+ N+ E E S
Sbjct: 244 KAKLEKGEEAENND----YCEECKQDGELLLCDTCPRAYHTVCIDENMEEP---PEGDWS 296
Query: 578 CWQCCCCSPSLLK 590
C C P ++K
Sbjct: 297 CAHCIEHGPEVVK 309
Score = 62 (26.9 bits), Expect = 4.6e-34, Sum P(3) = 4.6e-34
Identities = 30/127 (23%), Positives = 48/127 (37%)
Query: 462 KLEDHSVSPEN--INDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKC 519
KLE + N + D L + Y T C + +E P + C +
Sbjct: 246 KLEKGEEAENNDYCEECKQDGELLLCDTCPRAYHTVCIDENMEEPPEGDWSCAHCIEHGP 305
Query: 520 LLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCW 579
+ K+ K D E +C C + +L+ C SC F C+ ++E + E SC
Sbjct: 306 EVVKEEPAKQND--E-FCKICKETENLLLCDSCVCSFHAYCIDPPLTE--VPKEETWSCP 360
Query: 580 QCCCCSP 586
+C P
Sbjct: 361 RCETVKP 367
Score = 45 (20.9 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1156 KLPRPGKQGKLWKKGKDWYRLDG 1178
K+ R GK+ ++W + D++ L G
Sbjct: 1517 KVARNGKEYEIWYRRHDYWLLAG 1539
Score = 40 (19.1 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 14/68 (20%), Positives = 32/68 (47%)
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTA-VSKEN 1316
H T + + + + ++ + R+ V R + + E + ++ E D + A + +
Sbjct: 1361 HDTFNDGVPREGLNRQHVLGRIGLLSLVRRKVQEFEQYN-GQWSMPEIQDEVLAKAANGS 1419
Query: 1317 GQGSSQNT 1324
QGSS++T
Sbjct: 1420 AQGSSRST 1427
Score = 39 (18.8 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 654 IEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEA 713
+ KER +L++ +F+ SK L L + D +TG + K E
Sbjct: 795 LSKERFNQLEAFTAEFNEISKEDQIEKLHNLLGPHMLRRLKADVLTG-----MPSKSELI 849
Query: 714 VRIPSSISAK 723
VR+ S K
Sbjct: 850 VRVELSAMQK 859
Score = 37 (18.1 bits), Expect = 5.0e-15, Sum P(4) = 5.0e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 1091 KNDDGFFQKDWWNDLLHEHTYKE 1113
K D+ D+W LL H Y++
Sbjct: 1190 KEDEKEPDPDYWEKLLKHH-YEQ 1211
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 243 (90.6 bits), Expect = 7.3e-36, Sum P(4) = 7.3e-36
Identities = 64/191 (33%), Positives = 97/191 (50%)
Query: 1138 LVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197
L+F Q LD++E L + P + RLDG + +R +V RFN +
Sbjct: 1642 LIFCQLKSMLDIVEHDLLRPQLPSVT---------YLRLDGSIPAGQRHSIVSRFNN--D 1690
Query: 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 1257
+ L++T G LG+NL A+ V+ V+ WNP DLQA+ RA R GQ + V YRL+
Sbjct: 1691 PSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLIT 1750
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEF----GDDENPDPLTAV 1312
GT+EEKI Q K +A V+ ++ +++ E++L LF G E PD T+
Sbjct: 1751 RGTLEEKIMGLQKFKMNIANTVISQENASLQSMGTEQLLDLFTLDKKDGKTEKPDTSTSS 1810
Query: 1313 SKENGQGSSQN 1323
K + + +N
Sbjct: 1811 GKASMKSVLEN 1821
Score = 231 (86.4 bits), Expect = 7.3e-36, Sum P(4) = 7.3e-36
Identities = 59/193 (30%), Positives = 100/193 (51%)
Query: 878 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 937
+ DE H+IKN + ++A+KQ+ RI L+G+P+QNN++E + + DF+ GFLG+ +F
Sbjct: 1395 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1454
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRS-HILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
R+ PI + S+S + + + + L+ Q+ F+ R V +DLPPK +
Sbjct: 1455 AARYGKPILASRDARSSSREQEAVGVLAMEALHRQVLPFLLRRMKEDVLQDLPPKIIQDY 1514
Query: 997 TVKLSPLQRRLYKRFLDLHGFTN--DRVSNEKIRKS-----------FFAGYQALAQIWN 1043
LSPLQ +LY+ F + + VS+ +R+ F Q L ++ N
Sbjct: 1515 YCVLSPLQVQLYEDFAKSRAKCDIDETVSSISLREETEKPKLKATGHVFQALQYLRKLCN 1574
Query: 1044 HPGILQLTKDKGY 1056
HP ++ T+ Y
Sbjct: 1575 HPALVLTTQHPEY 1587
Score = 81 (33.6 bits), Expect = 7.3e-36, Sum P(4) = 7.3e-36
Identities = 46/185 (24%), Positives = 77/185 (41%)
Query: 701 YIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHT 760
++ ++ K E +IP I A+L+ +Q G+ W + + K K L IL
Sbjct: 1236 FLEQLLDGKKLENYKIPVPIKAELRKYQQDGVN--W---LAFLNKYK-----LHGILCDD 1285
Query: 761 MGLGKTFQVIAFL----------YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
MGLGKT Q I L Y + V+ +L+V P + +W E K+ E
Sbjct: 1286 MGLGKTLQSICILAGDHCLRAQEYARTKLVDSVPLPSLVVCPPTLTGHWVDEVGKFCSKE 1345
Query: 811 -LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRN-LSFGKHVKDRNMAREICH 868
L PL + R R + K + + + Y RN + F +++K + H
Sbjct: 1346 YLNPLH-YTGPPTER-ARLQYQVK---RHNLIVASYDVVRNDIDFFRNIKFNYCILDEGH 1400
Query: 869 ALQDG 873
+++G
Sbjct: 1401 VIKNG 1405
Score = 48 (22.0 bits), Expect = 1.8e-32, Sum P(4) = 1.8e-32
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 684 DLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSI 743
DL G+S + + VV+ +G E S+I+ A G+ +W+ ++ S+
Sbjct: 993 DLPTGSSGSIPTELDEAQKPYVVQRRGAEFAL--STIAKHFGAEMAKGLPHLWDAMVGSL 1050
Query: 744 R 744
R
Sbjct: 1051 R 1051
Score = 38 (18.4 bits), Expect = 7.3e-36, Sum P(4) = 7.3e-36
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 581 CCC-CSPSLLKRLTSEL 596
CCC C P + +T E+
Sbjct: 682 CCCICDPGV-NTVTQEI 697
Score = 37 (18.1 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 185 FLQTERPVRRRHGK 198
FL TER R+GK
Sbjct: 1447 FLGTERQFAARYGK 1460
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 438 (159.2 bits), Expect = 7.9e-36, Sum P(2) = 7.9e-36
Identities = 165/577 (28%), Positives = 266/577 (46%)
Query: 753 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS-EL 811
+ CILA MGLGKT QVI+F + ++ +N L+V P + L NW +EF K+ P+ ++
Sbjct: 591 MSCILADDMGLGKTCQVISF-FAYLKQINEP-GPHLVVVPSSTLENWLREFQKFAPALKI 648
Query: 812 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYT-AFRNLSFGKHVKDRNMAREICHAL 870
+P + E R+ ++L + K V + Y A N +K+RN
Sbjct: 649 EPYYGSLQE---REELRDILERNAGKYDVIVTTYNLAAGNKYDVSFLKNRNF-------- 697
Query: 871 QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 930
+++V DE HM+KN+ ++ L +++ R+ LTG+PLQNNL E +++F+
Sbjct: 698 ----NVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFIMPNL 753
Query: 931 LGSSHE-----FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVK 985
S E F+ R + +N H +++ I ++ +K F+ R + V
Sbjct: 754 FISKKESFDAIFKQRAKTTDDNKNHNPLLAQEA-ITRAKT-----MMKPFILRRRKDQVL 807
Query: 986 KDLPPKTVFVITVKLSPLQRRLY----------KRFLDLHGFTNDRVSNEKIRKSFFAGY 1035
K LPPK + +L+ +Q+++Y KR + D K++ S
Sbjct: 808 KHLPPKHTHIQYCELNAIQKKIYDKEIQIVLEHKRMIKDGELPKDAKEKSKLQSSSSKNL 867
Query: 1036 -QALAQIWNHPGILQ-LTKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDFLQGKN 1092
AL + HP + + + DK + N I E M DF K
Sbjct: 868 IMALRKASLHPLLFRNIYNDKIITKMSDAILDEPAYAENGNKEYIKEDMSYMTDFELHKL 927
Query: 1093 DDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDIL-TMCSNMGDKSLVFSQSIPTLDLIE 1151
F LH + + SGK+ L +L T+ + +K L+FS LD++E
Sbjct: 928 CCNF-PNTLSKYQLHNDEWMQ---SGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILE 983
Query: 1152 FYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGS 1211
LS L +K + RLDG T+ ++RQ L+++F E +K + ++ST+AG
Sbjct: 984 MVLSTLD--------YK----FLRLDGSTQVNDRQLLIDKFYE--DKDIPIFILSTKAGG 1029
Query: 1212 LGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVT 1271
GINL AN VII D S+NP D QA RA R GQTK V L+ ++EEKI++
Sbjct: 1030 FGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKN 1089
Query: 1272 KEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDP 1308
K L + + + ++ + + L + DEN P
Sbjct: 1090 KLALDSYISEDKKSQDVLESKVSDMLEDIIYDENSKP 1126
Score = 40 (19.1 bits), Expect = 7.9e-36, Sum P(2) = 7.9e-36
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 368 SLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKER 403
+L DD D GNN+ N T +++ KE+
Sbjct: 403 NLGEDDDDDND-DGNNDNNNSNNNNTAGADATSKEK 437
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 269 (99.8 bits), Expect = 8.2e-36, Sum P(2) = 8.2e-36
Identities = 80/235 (34%), Positives = 117/235 (49%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ L +LT + G + L++SQ +DL+E Y+ +++K + RL
Sbjct: 1104 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYM-----------VYRK-HTYMRL 1151
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG ++ SER+ +V F + L+STRAG LGINL +A+ VI D WNPT D Q
Sbjct: 1152 DGSSKISERRDMVADFQN--RNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1209
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR-TISKEEML 1295
A+ RA R GQTK V YRL+ GT+EE+I +R K + V+ T+ +E++
Sbjct: 1210 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1269
Query: 1296 HLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGK 1350
L D+E L +E Q + TN + K K + L GK
Sbjct: 1270 SLL-LDDEELEKKLRLRQEEKRQ--QEETNRVKERKRKREKYAEKKKKEDELDGK 1321
Score = 218 (81.8 bits), Expect = 8.2e-36, Sum P(2) = 8.2e-36
Identities = 71/261 (27%), Positives = 125/261 (47%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
++G+ ILA MGLGKT Q IA L N+ LI++P + L+NW QEF ++ P
Sbjct: 537 EQGINGILADEMGLGKTVQSIALLAHLAERENIW-GPFLIISPASTLNNWHQEFTRFVPK 595
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA-REICH 868
+V DR+ + W K L YT ++ F + + +++ +
Sbjct: 596 ----FKVLPYWGNPHDRKV-IRRFWSQKT---L--YT--QDAPFHVVITSYQLVVQDVKY 643
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ +V DEA +K++ + + L Q +C+ R+ LTG+P+QN + E + ++ F+
Sbjct: 644 FQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 703
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
S EF F IE+ S ++ ++ R H++ LK F+ R V+ +L
Sbjct: 704 TLFDSHEEFNEWFSKDIESHAENKSAIDENQL--SRLHMI---LKPFMLRRIKKDVENEL 758
Query: 989 PPKTVFVITVKLSPLQRRLYK 1009
K ++ +L+ Q+ LY+
Sbjct: 759 SDKIEILMYCQLTSRQKLLYQ 779
Score = 127 (49.8 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
Identities = 43/156 (27%), Positives = 73/156 (46%)
Query: 658 RQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGY-----IVNVVREKGEE 712
+ + LK+ + + S D S A++ + TG+ + N GE+
Sbjct: 451 KAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAANKSGTGFGESYSLANPSIRAGED 510
Query: 713 AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF 772
+ P+ + KLK +Q+ G+ ++ N+ + +G+ ILA MGLGKT Q IA
Sbjct: 511 IPQ-PTIFNGKLKGYQLKGMNWL-ANLYE---------QGINGILADEMGLGKTVQSIAL 559
Query: 773 LYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
L N+ LI++P + L+NW QEF ++ P
Sbjct: 560 LAHLAERENIW-GPFLIISPASTLNNWHQEFTRFVP 594
Score = 51 (23.0 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 963 QRSHILYEQLKGFVQRMDMNVVKKDLP 989
++ H+ EQL +++ +++VKK+LP
Sbjct: 267 KKKHLSIEQLNARRRKVWLSIVKKELP 293
Score = 47 (21.6 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 644 LGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSV 679
L + K KI+IE Q + S Q ++ S LMN V
Sbjct: 777 LYQALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLV 812
Score = 42 (19.8 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1108 EHTYKELDYSGKMVLLLDILTMCSNMGD 1135
+HTY LD S K+ D++ N D
Sbjct: 1145 KHTYMRLDGSSKISERRDMVADFQNRND 1172
Score = 37 (18.1 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 1074 NVVIGEKPRNMNDFLQGKNDDGFFQKD 1100
N+VI P N L DD F D
Sbjct: 1328 NLVIPFVPSADNSNLSADGDDSFISVD 1354
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 234 (87.4 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 72/206 (34%), Positives = 100/206 (48%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK + ILT + L+F+Q ++L+E Y S K W + RL
Sbjct: 937 SGKFDTMDQILTKMHASKHRVLIFTQMTEVINLMEEYFSL--------KEWT----FLRL 984
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T+ ER LV +N P + ++ST AG LG+NL +A+ VII D WNP DLQ
Sbjct: 985 DGSTKPEERAHLVVEWNRP-DSPFWIFVLSTHAGGLGMNLQTADTVIIFDSDWNPQMDLQ 1043
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ--VH-----RTI 1289
A R R GQT V +RL++ ++EEKI R K + A+++ H R
Sbjct: 1044 AQDRCHRIGQTNSVSVFRLISANSIEEKILGRATDKLEIDAKIIQAGMFNTHSNDQERRA 1103
Query: 1290 SKEEMLHLFEFGD-DENPDPLTAVSK 1314
E+ LH F DE P L ++K
Sbjct: 1104 KLEQFLHGFPNNTLDEVPVDLKEINK 1129
Score = 181 (68.8 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 59/201 (29%), Positives = 98/201 (48%)
Query: 852 SFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSP 911
SF +KDR + H + ++ DE H IKN + + L+Q + R+ LTG+P
Sbjct: 729 SFEYIIKDRKTLGRV-HWIY-----IIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTP 782
Query: 912 LQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIE-NGQHT-NSTSEDVKIMNQRSHILY 969
LQN+L E + +++F+ S+ F+N F P + G++ N E+ I+ R H
Sbjct: 783 LQNDLGELWALLNFLLPTIFNSADTFQNWFNAPFQAKGKNLINVNEEESLIIINRLH--- 839
Query: 970 EQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNE---- 1025
+ L+ F+ R + V+ LP K VI +S LQ +Y+ ++ D S E
Sbjct: 840 QVLRFFLLRRLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRSG 899
Query: 1026 KIR-KSFFAGYQALAQIWNHP 1045
+++ K F + L +I NHP
Sbjct: 900 RLKMKGFNNIVKQLQKICNHP 920
Score = 125 (49.1 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 50/193 (25%), Positives = 84/193 (43%)
Query: 646 EET-KRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDA-----IT 699
E+T KR +E+E ++ + L + + N+ T S S + + IT
Sbjct: 535 EQTEKRARELEEELKQNEEQLNDHNGTNTNNNNTTTTTTTTSTTTSTSLSNEGQPIANIT 594
Query: 700 GYI---VNVVREKGEEAV-RIPSSISA-KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLG 754
+ ++ +K V P ++ KLK +QV G+ ++ + + L
Sbjct: 595 SPLQSTTTILAKKSNNLVIEQPDLMTGGKLKEYQVTGLEWL----------ISLYTRNLN 644
Query: 755 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPL 814
ILA MGLGKT Q IAF+ +N+ L+V P++ + NW EF +W P L
Sbjct: 645 GILADEMGLGKTVQTIAFISFLYERMNVR-EPFLVVAPLSTISNWVSEFARWSPK----L 699
Query: 815 RVFMLEDVSRDRR 827
V + + +RR
Sbjct: 700 HVIVYKGKQDERR 712
Score = 52 (23.4 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
Identities = 26/125 (20%), Positives = 48/125 (38%)
Query: 793 VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLS 852
+ +H + +E K L R+ +L+ + +LLAK + + L+G T S
Sbjct: 468 IKAIHRYHKEKEKREIERLSKERIRLLKARDTEGYRDLLAKTKNERLEMLLGETDSLLSS 527
Query: 853 FGKHV-KDRN--MAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTG 909
+ + K++ ARE+ L+ + L N TT ++ G
Sbjct: 528 IHQLMEKEQTEKRARELEEELKQNEEQLNDHNGTNTNNNNTTTTTTTTSTTTSTSLSNEG 587
Query: 910 SPLQN 914
P+ N
Sbjct: 588 QPIAN 592
Score = 49 (22.3 bits), Expect = 7.8e-28, Sum P(3) = 7.8e-28
Identities = 21/55 (38%), Positives = 25/55 (45%)
Query: 80 LVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLD 134
L K KNE E L D L +++ M KEQ E ELE E EQL+
Sbjct: 506 LAKTKNERLEMLLGET--DSLLSSIHQLME--KEQTEKRARELEEELKQNEEQLN 556
Score = 42 (19.8 bits), Expect = 9.9e-16, Sum P(3) = 9.9e-16
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 1278 RVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKE--NG-QGSSQNTN 1325
R +Q+ + ++E + D+EN D + V NG + SS N N
Sbjct: 1320 RATPQQRKQQRQQQQEKQNHENNSDNENQDDIIQVDDHPTNGIENSSNNNN 1370
Score = 37 (18.1 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 643 ELGEETKRKIAIEKERQERLKSLQ 666
EL + + +++E E Q ++S+Q
Sbjct: 366 ELQRKLRNDVSLEMEDQVLIRSIQ 389
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 262 (97.3 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 73/203 (35%), Positives = 108/203 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ L +LT + G + L++SQ +DL+E Y+ +++K + RL
Sbjct: 1131 SGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYM-----------VYRK-HTYMRL 1178
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG ++ SER+ +V F + + L+STRAG LGINL +A+ VI D WNPT D Q
Sbjct: 1179 DGSSKISERRDMVADFQSRTD--IFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1236
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR-TISKEEML 1295
A+ RA R GQTK V YRL+ GT+EE+I +R K + V+ T+ +E++
Sbjct: 1237 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1296
Query: 1296 HLFEFGDDENPDPLTAVSKENGQ 1318
L D+E L +E Q
Sbjct: 1297 SLL-LDDEELEKKLRLRQEEKRQ 1318
Score = 224 (83.9 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 73/261 (27%), Positives = 124/261 (47%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
++G+ ILA MGLGKT Q IA L N+ LI++P + L+NW QEF ++ P
Sbjct: 535 EQGINGILADEMGLGKTVQSIALLAHLAERENIW-GPFLIISPASTLNNWHQEFSRFVPK 593
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA-REICH 868
+V DR+ + W K L YT +N F + + +++ +
Sbjct: 594 ----FKVLPYWGNPHDRKV-IRKFWSQKT---L--YT--QNAPFHVVITSYQLVVQDVKY 641
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ +V DEA +K++ + + L Q +C+ R+ LTG+P+QN + E + ++ F+
Sbjct: 642 FQRVKWQYMVLDEAQALKSSTSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 701
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
S EF F IE+ S ++ ++ R H++ LK F+ R V+ +L
Sbjct: 702 TLFDSHEEFNEWFSKDIESHAENKSAIDENQL--SRLHMI---LKPFMLRRIKKDVENEL 756
Query: 989 PPKTVFVITVKLSPLQRRLYK 1009
K + +L+ QR LY+
Sbjct: 757 SDKIEILTYCQLTSRQRLLYQ 777
Score = 121 (47.7 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 34/101 (33%), Positives = 55/101 (54%)
Query: 708 EKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTF 767
+ GE+ + P+ + KLK +Q+ G+ ++ N+ + +G+ ILA MGLGKT
Sbjct: 504 QAGEDIPQ-PTIFNGKLKGYQLKGMNWL-ANLYE---------QGINGILADEMGLGKTV 552
Query: 768 QVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
Q IA L N+ LI++P + L+NW QEF ++ P
Sbjct: 553 QSIALLAHLAERENIW-GPFLIISPASTLNNWHQEFSRFVP 592
Score = 55 (24.4 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 945 IENGQHTNST----SEDVKI-MNQRSHILYEQLKGFVQRMDMNVVKKDLP 989
+E QH T S D + M ++ H+ EQL +++ + + KK++P
Sbjct: 242 MEGRQHITKTFAKFSHDAPLPMIKKKHLTIEQLNARRRKVWLTIAKKEIP 291
Score = 52 (23.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 644 LGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSV 679
L + K KI+IE Q + S Q S+ S LMN V
Sbjct: 775 LYQALKNKISIEDLLQSSMGSAQQAHSTTSSLMNLV 810
Score = 37 (18.1 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 1108 EHTYKELDYSGKM 1120
+HTY LD S K+
Sbjct: 1172 KHTYMRLDGSSKI 1184
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 273 (101.2 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 78/236 (33%), Positives = 120/236 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1057 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1104
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1105 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1163
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ V YR + ++EE+I QV K + +V R + ++SK+
Sbjct: 1164 AFSRAHRIGQANKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKAGSMSKQ 1221
Query: 1293 EMLHLFEFGDDEN-PDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESL 1347
E+ + +FG +E D +KE N A+ L + + D ++++
Sbjct: 1222 ELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNM 1277
Score = 213 (80.0 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 86/303 (28%), Positives = 139/303 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 751 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP-- 807
Query: 811 LKPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREI 866
K V D +D RA + ++ + G AF R HV +
Sbjct: 808 -KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELIT 864
Query: 867 CHALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 923
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + ++
Sbjct: 865 IDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLL 924
Query: 924 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 983
+F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 925 NFL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADV 970
Query: 984 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIW 1042
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L +
Sbjct: 971 FK-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCC 1027
Query: 1043 NHP 1045
NHP
Sbjct: 1028 NHP 1030
Score = 55 (24.4 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 380 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 422
Score = 48 (22.0 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 855 KHVKDRNMAREICHALQDGPDILVCD 880
K +D +M E C +DG ++L CD
Sbjct: 447 KEEEDDHM--EYCRVCKDGGELLCCD 470
Score = 46 (21.3 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 590
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 456 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 504
Score = 43 (20.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 378 QDYCEVCQQGGEIILCD 394
Score = 37 (18.1 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1161 GKQGKLWKKGKDWYRLDG 1178
GK ++W + D++ L G
Sbjct: 1732 GKLNEIWHRRHDYWLLAG 1749
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 273 (101.2 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 78/236 (33%), Positives = 120/236 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1059 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1106
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1107 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1165
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ V YR + ++EE+I QV K + +V R + ++SK+
Sbjct: 1166 AFSRAHRIGQANKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKAGSMSKQ 1223
Query: 1293 EMLHLFEFGDDEN-PDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESL 1347
E+ + +FG +E D +KE N A+ L + + D ++++
Sbjct: 1224 ELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNM 1279
Score = 213 (80.0 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 86/303 (28%), Positives = 139/303 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 753 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP-- 809
Query: 811 LKPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREI 866
K V D +D RA + ++ + G AF R HV +
Sbjct: 810 -KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELIT 866
Query: 867 CHALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 923
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + ++
Sbjct: 867 IDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLL 926
Query: 924 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 983
+F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 927 NFL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADV 972
Query: 984 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIW 1042
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L +
Sbjct: 973 FK-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCC 1029
Query: 1043 NHP 1045
NHP
Sbjct: 1030 NHP 1032
Score = 55 (24.4 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 381 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 423
Score = 48 (22.0 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 855 KHVKDRNMAREICHALQDGPDILVCD 880
K +D +M E C +DG ++L CD
Sbjct: 449 KEEEDDHM--EYCRVCKDGGELLCCD 472
Score = 46 (21.3 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 590
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 458 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 506
Score = 43 (20.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 379 QDYCEVCQQGGEIILCD 395
Score = 37 (18.1 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1161 GKQGKLWKKGKDWYRLDG 1178
GK ++W + D++ L G
Sbjct: 1734 GKLNEIWHRRHDYWLLAG 1751
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 273 (101.2 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 78/236 (33%), Positives = 120/236 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1059 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1106
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1107 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1165
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ V YR + ++EE+I QV K + +V R + ++SK+
Sbjct: 1166 AFSRAHRIGQANKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKAGSMSKQ 1223
Query: 1293 EMLHLFEFGDDEN-PDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESL 1347
E+ + +FG +E D +KE N A+ L + + D ++++
Sbjct: 1224 ELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNM 1279
Score = 213 (80.0 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 86/303 (28%), Positives = 139/303 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 753 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP-- 809
Query: 811 LKPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREI 866
K V D +D RA + ++ + G AF R HV +
Sbjct: 810 -KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELIT 866
Query: 867 CHALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 923
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + ++
Sbjct: 867 IDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLL 926
Query: 924 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 983
+F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 927 NFL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADV 972
Query: 984 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIW 1042
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L +
Sbjct: 973 FK-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCC 1029
Query: 1043 NHP 1045
NHP
Sbjct: 1030 NHP 1032
Score = 55 (24.4 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 381 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 423
Score = 48 (22.0 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 855 KHVKDRNMAREICHALQDGPDILVCD 880
K +D +M E C +DG ++L CD
Sbjct: 449 KEEEDDHM--EYCRVCKDGGELLCCD 472
Score = 46 (21.3 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 590
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 458 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 506
Score = 43 (20.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 379 QDYCEVCQQGGEIILCD 395
Score = 37 (18.1 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1161 GKQGKLWKKGKDWYRLDG 1178
GK ++W + D++ L G
Sbjct: 1736 GKLNEIWHRRHDYWLLAG 1753
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 272 (100.8 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 72/196 (36%), Positives = 107/196 (54%)
Query: 1074 NVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS-GKMVLLLDILTMCSN 1132
N++ K + + +L ++ QK + E+ + L S GKMVLL +LT
Sbjct: 650 NIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK 709
Query: 1133 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERF 1192
G + L+FSQ + LD++ YLS KG ++ RLDG S++R+ ++ F
Sbjct: 710 DGHRVLIFSQMVRMLDILGDYLSI------------KGINFQRLDGTVPSAQRRISIDHF 757
Query: 1193 NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 1252
N P + L+STRAG LGINL +A+ V+I D WNP DLQA+ RA R GQ V
Sbjct: 758 NSP-DSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMV 816
Query: 1253 YRLMAHGTMEEKIYKR 1268
YRL++ T+EE++ +R
Sbjct: 817 YRLVSKDTVEEEVLER 832
Score = 226 (84.6 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 85/271 (31%), Positives = 127/271 (46%)
Query: 749 GDKGLGCILAHTMGLGKTFQVIAFLYTAM--RSVNLGLRTALIVTPVNVLHNWKQEFMKW 806
GD G ILA MGLGKT Q +AF+ + R N G +IV P++ + W F KW
Sbjct: 394 GDNG---ILADEMGLGKTVQTVAFISWLIFARRQN-GPH--IIVVPLSTMPAWLDTFEKW 447
Query: 807 RPSELKPLRVFMLEDVSRD--RRAELLAKWRAKGGV---FLIGYTAFRNLSFGKHVKDRN 861
P +L + +M SRD R E RAKG F + T + + +KDR
Sbjct: 448 AP-DLNCI-CYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYI-----LKDRA 500
Query: 862 MAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYC 921
I + DEAH +KN + ++L K R+ +TG+PLQNN+ E
Sbjct: 501 ELGSIKW------QFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAA 554
Query: 922 MVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDM 981
+V+F+ G RF I+ Q + ++D + + H L+ +++ F+ R
Sbjct: 555 LVNFLMPG----------RFT--ID--QEIDFENQDEE-QEEYIHDLHRRIQPFILRRLK 599
Query: 982 NVVKKDLPPKTVFVITVKLSPLQRRLYKRFL 1012
V+K LP KT ++ V+LS +Q YK L
Sbjct: 600 KDVEKSLPSKTERILRVELSDVQTEYYKNIL 630
Score = 190 (71.9 bits), Expect = 7.8e-32, Sum P(3) = 7.8e-32
Identities = 74/237 (31%), Positives = 109/237 (45%)
Query: 713 AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF 772
+V+ P +L+ Q+ GI W + S GD G ILA MGLGKT Q +AF
Sbjct: 365 SVQPPFIKGGELRDFQLTGIN--WMAFLWS-----KGDNG---ILADEMGLGKTVQTVAF 414
Query: 773 LYTAM--RSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRD--RRA 828
+ + R N G +IV P++ + W F KW P +L + +M SRD R
Sbjct: 415 ISWLIFARRQN-GPH--IIVVPLSTMPAWLDTFEKWAP-DLNCI-CYMGNQKSRDTIREY 469
Query: 829 ELLAKWRAKGGV---FLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMI 885
E RAKG F + T + + +KDR I + DEAH +
Sbjct: 470 EFYTNPRAKGKKTMKFNVLLTTYEYI-----LKDRAELGSIKW------QFMAVDEAHRL 518
Query: 886 KNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F-LGSSHEFRNR 940
KN + ++L K R+ +TG+PLQNN+ E +V+F+ G F + +F N+
Sbjct: 519 KNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ 575
Score = 38 (18.4 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1308 PLTA-VSKENGQGSSQNTNCALKHK 1331
PL + VS++NG S N + H+
Sbjct: 1343 PLKSKVSRDNGTRQSSNPSSGSAHE 1367
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 255 (94.8 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 70/199 (35%), Positives = 109/199 (54%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+VLL +L G + L+FSQ + LD++ YL +G+ ++ + RL
Sbjct: 1064 SGKLVLLDKLLIRLKETGHRVLIFSQMVRMLDILADYL--------KGRSFQ----FQRL 1111
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG +R + ++RFN ++ C L+ST+AG LGINL +A+ VII D WNP DLQ
Sbjct: 1112 DGSMSREKRSQAMDRFNA-VDSPDFCFLLSTKAGGLGINLSTADTVIIFDSDWNPQNDLQ 1170
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK---EGLAARVVDRQQVHRT----- 1288
A RA R GQ V YRL++ ++EE I +R K + L + +++ Q ++
Sbjct: 1171 AEARAHRIGQKNHVNIYRLVSKSSVEEDILERAKQKMVLDHLVIQTMEKSQTAKSNTPNN 1230
Query: 1289 ---ISKEEMLHLFEFGDDE 1304
+KEE+ + +FG +E
Sbjct: 1231 SNVFNKEELEAILKFGAEE 1249
Score = 232 (86.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 77/259 (29%), Positives = 123/259 (47%)
Query: 756 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLR 815
ILA MGLGKT Q I+FL ++ L+V P++ + NW++EF KW P+ +
Sbjct: 777 ILADEMGLGKTIQTISFLSYLFNEQDIK-GPFLVVVPLSTIENWQREFAKWAPA--MNVI 833
Query: 816 VFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
V+ SRD R E R G + + ++ +KD+N I
Sbjct: 834 VYTGTGQSRDIIRLYEFYTTNRL--GKKKLNFNVLLT-TYDFILKDKNTLGTIKW----- 885
Query: 874 PDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGS 933
+ L DEAH +KN+ + + LK R+ +TG+PLQN+L E + +++F+ S
Sbjct: 886 -EFLAVDEAHRLKNSESVLHEVLKLYNTTNRLLVTGTPLQNSLKELWNLLNFLMPNKFTS 944
Query: 934 SHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 993
+F++++ + EN Q L+ LK + R V+K LPPKT
Sbjct: 945 LKDFQDQYSDLKENDQIAQ---------------LHSVLKPHLLRRIKKDVEKSLPPKTE 989
Query: 994 FVITVKLSPLQRRLYKRFL 1012
++ V LS +Q++ YK L
Sbjct: 990 RILRVDLSNVQKKYYKWIL 1008
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 268 (99.4 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 74/208 (35%), Positives = 108/208 (51%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ L +LT + G + L++SQ +DL+E Y+ +++K + RL
Sbjct: 1103 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYM-----------VYRK-HTYMRL 1150
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG ++ SER+ +V F + L+STRAG LGINL +A+ VI D WNPT D Q
Sbjct: 1151 DGSSKISERRDMVADFQT--RNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1208
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR-TISKEEML 1295
A+ RA R GQTK V YRL+ GT+EE+I +R K + V+ T+ +E++
Sbjct: 1209 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1268
Query: 1296 HLFEFGDDENPDPLTAVSKENGQGSSQN 1323
L D+E L +E Q N
Sbjct: 1269 SLL-LDDEELEKKLRLRQEEKRQQEESN 1295
Score = 216 (81.1 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 71/261 (27%), Positives = 124/261 (47%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
++G+ ILA MGLGKT Q IA L N+ LI++P + L+NW QEF ++ P
Sbjct: 536 EQGINGILADEMGLGKTVQSIALLAHLAERENIW-GPFLIISPASTLNNWHQEFTRFVPK 594
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA-REICH 868
+V DR+ + W K L YT ++ F + + +++ +
Sbjct: 595 ----FKVLPYWGNPHDRKV-IRRFWSQKT---L--YT--QDAPFHVVITSYQLVVQDVKY 642
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ +V DEA +K++ + + L Q +C+ R+ LTG+P+QN + E + ++ F+
Sbjct: 643 FQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 702
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
S EF F IE+ S ++ ++ R H++ LK F+ R V+ +L
Sbjct: 703 TLFDSHEEFNEWFSKDIESHAENKSAIDENQL--SRLHMI---LKPFMLRRIKKDVENEL 757
Query: 989 PPKTVFVITVKLSPLQRRLYK 1009
K + +L+ Q+ LY+
Sbjct: 758 SDKIEILTYCQLTSRQKLLYQ 778
Score = 122 (48.0 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 42/156 (26%), Positives = 73/156 (46%)
Query: 658 RQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGY-----IVNVVREKGEE 712
+ + LK+ + + S D S A++ + +G+ + N GE+
Sbjct: 450 KAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAADKSGSGFGESYSLANPSIRAGED 509
Query: 713 AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF 772
+ P+ + KLK +Q+ G+ ++ N+ + +G+ ILA MGLGKT Q IA
Sbjct: 510 IPQ-PTIFNGKLKGYQLKGMNWL-ANLYE---------QGINGILADEMGLGKTVQSIAL 558
Query: 773 LYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
L N+ LI++P + L+NW QEF ++ P
Sbjct: 559 LAHLAERENIW-GPFLIISPASTLNNWHQEFTRFVP 593
Score = 51 (23.0 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 963 QRSHILYEQLKGFVQRMDMNVVKKDLP 989
++ H+ EQL +++ +++VKK+LP
Sbjct: 266 KKKHLSIEQLNARRRKVWLSIVKKELP 292
Score = 47 (21.6 bits), Expect = 8.0e-18, Sum P(2) = 8.0e-18
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 644 LGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSV 679
L + K KI+IE Q + S Q ++ S LMN V
Sbjct: 776 LYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLV 811
Score = 37 (18.1 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 1108 EHTYKELDYSGKM 1120
+HTY LD S K+
Sbjct: 1144 KHTYMRLDGSSKI 1156
Score = 37 (18.1 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 1074 NVVIGEKPRNMNDFLQGKNDDGFFQKD 1100
N+VI P N L DD F D
Sbjct: 1327 NLVIPFVPSADNSNLSADGDDSFISVD 1353
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 227 (85.0 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 74/213 (34%), Positives = 101/213 (47%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 412 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 459
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 460 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 518
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKI-----YKRQVTKEGLAARVVDRQQVHRTISK 1291
A RA R GQ V RL ++EEKI YK V ++ + A + D+ ++ S
Sbjct: 519 AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQ----KSSSH 574
Query: 1292 EEMLHLFEFGDDENPDPLTAVSKENGQGSSQNT 1324
E L + E D S +G S +T
Sbjct: 575 ERRAFLQAILEHEEQDESRHCSTGSGSASFAHT 607
Score = 177 (67.4 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 877 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 211 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 270
Query: 936 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 271 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 327
Query: 995 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 1049
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 328 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 386
Score = 126 (49.4 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 675 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 732
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 39 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 95
Query: 733 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 792
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 96 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 144
Query: 793 VNVLHNWKQEFMKWRPSELK 812
++ L NW EF KW PS +K
Sbjct: 145 LSTLSNWAYEFDKWAPSVVK 164
Score = 40 (19.1 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 872 DGPDILVCDEAHMIKNTRAD 891
D D+ D H+I+N + D
Sbjct: 27 DSDDVSEVDARHIIENAKQD 46
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 252 (93.8 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 64/171 (37%), Positives = 94/171 (54%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
++ SGK ++L +L G K L+FSQ LD++ Y + +G ++
Sbjct: 611 VEASGKFLILDRMLPELKKRGHKVLIFSQMTSILDILMDYC------------YLRGYEY 658
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG ++R + +++F+ + V L+STRAG LGINL SA+ VII D WNP
Sbjct: 659 SRLDGSMSYADRDENMKKFSS--DPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQA 716
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ 1284
DLQA R R GQTKPV +RL+ T++EKI +R K L V+ + +
Sbjct: 717 DLQAQDRCHRIGQTKPVVVHRLITANTIDEKILERASAKRKLEKMVIHKNK 767
Score = 232 (86.7 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 94/380 (24%), Positives = 167/380 (43%)
Query: 649 KRKIAIEKERQERLKSLQVQFSSKSKLMNSVT---LDGDLSAGASIEV-----LGDA--- 697
K+ + +E++++ R +K ++M+ ++ + A +E L D
Sbjct: 133 KKTVKVERKKRGREDYKIADVMTKEEIMSKAKKPKMEEEAQASVKLEAEDIEKLSDTNSD 192
Query: 698 ITGYIVNVVREKGEEAVRIPSSISAK-LKAHQ---VVGIRFMWENIIQSIRKVKS-GDKG 752
I G + +RE ++ + +++ + + A Q G W + + I ++ + G
Sbjct: 193 IKGRLSETLRENSKQMLDPERTVNGQPVPAQQPQLFTGGVMRWYQV-EGIEWLRMLWENG 251
Query: 753 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 812
+ ILA MGLGKT Q IA + + LG L+V P++ L NW EF ++ P
Sbjct: 252 INGILADEMGLGKTIQCIAHIAMMVEKKVLG--PFLVVAPLSTLPNWISEFKRFTPE--- 306
Query: 813 PLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 872
+ V + ++R +L+ K R G + SF ++DR + H
Sbjct: 307 -VSVLLYHGPQKER-LDLVKKIRQHQGSLRMCPVVVT--SFEIAMRDRKFLQRF-HW--- 358
Query: 873 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 932
+ L+ DE H IKN Q LK + ++ LTG+PLQNNL E + +++F+
Sbjct: 359 --NYLIVDEGHRIKNLNCRLVQELKMLPTDNKLLLTGTPLQNNLSELWSLLNFLLPDVFD 416
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRS----HILYEQLKGFVQRMDMNVVKKDL 988
F + F I S +E++ + N+R H+L+ L F+ R + V ++
Sbjct: 417 DLKSFESWFD--IST---ITSDAENI-VANEREQNILHMLHLILTPFLLRRLKSDVTLEV 470
Query: 989 PPKTVFVITVKLSPLQRRLY 1008
PPK V+ L+ Q Y
Sbjct: 471 PPKKEIVVYAPLTNKQEAFY 490
Score = 42 (19.8 bits), Expect = 1.8e-35, Sum P(3) = 1.8e-35
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 299 EKELALSEEQRKKFRKVKEE 318
E+E L EE KK R++ EE
Sbjct: 51 EEEKNLEEEGEKKEREMMEE 70
Score = 39 (18.8 bits), Expect = 3.7e-35, Sum P(3) = 3.7e-35
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 85 NEVREELAQALHGDDLEAAVEDEMTVYKE--QWEAALDEL-ETESAHLLEQ 132
NE E + +E + +EM + KE + E L+E E + ++E+
Sbjct: 20 NESEEPEGTTIEETTMEKSKHEEMVITKEMEEEEKNLEEEGEKKEREMMEE 70
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 229 (85.7 bits), Expect = 1.8e-35, Sum P(4) = 1.8e-35
Identities = 62/177 (35%), Positives = 91/177 (51%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
+GK LL +L G K L+F Q ++++E +L +G + RL
Sbjct: 1101 AGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRF------------RGMKYMRL 1148
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T++ +R L++ FN P + C L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 1149 DGGTKADDRTDLLKSFNAP-DSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1207
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEE 1293
A RA R GQ V RL+ ++EE I +R K + +V+ + + EE
Sbjct: 1208 AQDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGKFDNKSTAEE 1264
Score = 182 (69.1 bits), Expect = 1.8e-35, Sum P(4) = 1.8e-35
Identities = 55/179 (30%), Positives = 87/179 (48%)
Query: 877 LVCDEAHMIKNTRADTTQALKQ-VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KN + ++ L Q R+ LTG+PLQNNL E + +++FV S
Sbjct: 905 MIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSVK 964
Query: 936 EFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 993
F F P N GQ +E+ ++ R L++ L+ F+ R V+KDLP K
Sbjct: 965 SFDEWFNTPFANTGGQDKIELTEEETLLVIRR--LHKVLRPFLLRRLKKDVEKDLPNKVE 1022
Query: 994 FVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF-AGYQA--LAQIWNHPGILQ 1049
V+ K S LQ +LY++ L + +N + + A Q L +I NHP + +
Sbjct: 1023 KVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPVTIKNANNQIMQLKKICNHPFVYE 1081
Score = 140 (54.3 bits), Expect = 1.8e-35, Sum P(4) = 1.8e-35
Identities = 52/168 (30%), Positives = 78/168 (46%)
Query: 646 EETKRKIAIEKERQERLKSLQVQFSSKSK-LMNSVTLDGDLSAGASIEVLGDAITGYI-- 702
++T+ +E+ Q L SL + S+ K +++ G AS+E L D I
Sbjct: 700 KDTRITHLLEQTNQF-LDSLALAVQSQQKEAQDNLAYSGRAIEPASVEPLDDEKREKIDY 758
Query: 703 VNVVREKGEEAVRIPSS-ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 761
NV EE + PS + LK +Q+ G+++M V + L ILA M
Sbjct: 759 YNVAHRIKEEVTKQPSILVGGTLKEYQLKGLQWM----------VSLFNNHLNGILADEM 808
Query: 762 GLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
GLGKT Q I+ L T + V L++ P++ + NW EF KW PS
Sbjct: 809 GLGKTIQTISLL-TYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWAPS 855
Score = 48 (22.0 bits), Expect = 3.2e-27, Sum P(3) = 3.2e-27
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 643 ELGEETKRKIAIEKERQE----RLKS 664
+L EE +R +A+EK+RQE RLKS
Sbjct: 343 QLREEEQR-LALEKQRQELEQNRLKS 367
Score = 42 (19.8 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLS 686
++D + E +I IE+E+ ERL+ Q+ ++ + L+ LS
Sbjct: 514 MEDIYVNREGYMQITIEQEK-ERLRK-QIDSLNEKDTEKKLELETQLS 559
Score = 38 (18.4 bits), Expect = 8.3e-16, Sum P(4) = 8.3e-16
Identities = 12/69 (17%), Positives = 33/69 (47%)
Query: 1254 RLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS 1313
+++A E ++++ + LA + + R ++EE+ +++ +E S
Sbjct: 1299 QIIARNENELVVFRKMDEERYLATK--NAPYPSRLYTEEELPEIYKIDPEELFKKEDVAS 1356
Query: 1314 KENGQGSSQ 1322
+E G+G+ +
Sbjct: 1357 EEYGRGARE 1365
Score = 37 (18.1 bits), Expect = 1.8e-35, Sum P(4) = 1.8e-35
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 186 LQTERPVR---RRHGKLLEE 202
LQ E +R ++HGK +EE
Sbjct: 613 LQLESMMREQNKKHGKTIEE 632
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 229 (85.7 bits), Expect = 1.8e-35, Sum P(4) = 1.8e-35
Identities = 62/177 (35%), Positives = 91/177 (51%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
+GK LL +L G K L+F Q ++++E +L +G + RL
Sbjct: 1101 AGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRF------------RGMKYMRL 1148
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T++ +R L++ FN P + C L+STRAG LG+NL +A+ VII D WNP DLQ
Sbjct: 1149 DGGTKADDRTDLLKSFNAP-DSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1207
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEE 1293
A RA R GQ V RL+ ++EE I +R K + +V+ + + EE
Sbjct: 1208 AQDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKVIQAGKFDNKSTAEE 1264
Score = 182 (69.1 bits), Expect = 1.8e-35, Sum P(4) = 1.8e-35
Identities = 55/179 (30%), Positives = 87/179 (48%)
Query: 877 LVCDEAHMIKNTRADTTQALKQ-VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KN + ++ L Q R+ LTG+PLQNNL E + +++FV S
Sbjct: 905 MIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSVK 964
Query: 936 EFRNRFQNPIEN--GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTV 993
F F P N GQ +E+ ++ R L++ L+ F+ R V+KDLP K
Sbjct: 965 SFDEWFNTPFANTGGQDKIELTEEETLLVIRR--LHKVLRPFLLRRLKKDVEKDLPNKVE 1022
Query: 994 FVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF-AGYQA--LAQIWNHPGILQ 1049
V+ K S LQ +LY++ L + +N + + A Q L +I NHP + +
Sbjct: 1023 KVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPVTIKNANNQIMQLKKICNHPFVYE 1081
Score = 140 (54.3 bits), Expect = 1.8e-35, Sum P(4) = 1.8e-35
Identities = 52/168 (30%), Positives = 78/168 (46%)
Query: 646 EETKRKIAIEKERQERLKSLQVQFSSKSK-LMNSVTLDGDLSAGASIEVLGDAITGYI-- 702
++T+ +E+ Q L SL + S+ K +++ G AS+E L D I
Sbjct: 700 KDTRITHLLEQTNQF-LDSLALAVQSQQKEAQDNLAYSGRAIEPASVEPLDDEKREKIDY 758
Query: 703 VNVVREKGEEAVRIPSS-ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTM 761
NV EE + PS + LK +Q+ G+++M V + L ILA M
Sbjct: 759 YNVAHRIKEEVTKQPSILVGGTLKEYQLKGLQWM----------VSLFNNHLNGILADEM 808
Query: 762 GLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
GLGKT Q I+ L T + V L++ P++ + NW EF KW PS
Sbjct: 809 GLGKTIQTISLL-TYLVEVKKIPGPFLVIVPLSTVTNWNLEFEKWAPS 855
Score = 48 (22.0 bits), Expect = 3.2e-27, Sum P(3) = 3.2e-27
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 643 ELGEETKRKIAIEKERQE----RLKS 664
+L EE +R +A+EK+RQE RLKS
Sbjct: 343 QLREEEQR-LALEKQRQELEQNRLKS 367
Score = 42 (19.8 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLS 686
++D + E +I IE+E+ ERL+ Q+ ++ + L+ LS
Sbjct: 514 MEDIYVNREGYMQITIEQEK-ERLRK-QIDSLNEKDTEKKLELETQLS 559
Score = 38 (18.4 bits), Expect = 8.3e-16, Sum P(4) = 8.3e-16
Identities = 12/69 (17%), Positives = 33/69 (47%)
Query: 1254 RLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS 1313
+++A E ++++ + LA + + R ++EE+ +++ +E S
Sbjct: 1299 QIIARNENELVVFRKMDEERYLATK--NAPYPSRLYTEEELPEIYKIDPEELFKKEDVAS 1356
Query: 1314 KENGQGSSQ 1322
+E G+G+ +
Sbjct: 1357 EEYGRGARE 1365
Score = 37 (18.1 bits), Expect = 1.8e-35, Sum P(4) = 1.8e-35
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 186 LQTERPVR---RRHGKLLEE 202
LQ E +R ++HGK +EE
Sbjct: 613 LQLESMMREQNKKHGKTIEE 632
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 246 (91.7 bits), Expect = 2.3e-35, Sum P(4) = 2.3e-35
Identities = 67/201 (33%), Positives = 109/201 (54%)
Query: 1110 TYKELDY-SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1168
T + L Y SGKM++L +L G + L+FSQ LD++E Y +
Sbjct: 444 TDEHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYC------------YF 491
Query: 1169 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1228
+ ++ R+DG T +R + ++ +N P +++ L++TRAG LGINL SA+ VI+ D
Sbjct: 492 RDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKF-IFLLTTRAGGLGINLTSADIVILYDSD 550
Query: 1229 WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-QQVHR 1287
WNP DLQA+ RA R GQ K V +R + +EEK+ +R K L V+ + +Q++
Sbjct: 551 WNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQMNS 610
Query: 1288 TI----SKEEMLHLFEFGDDE 1304
SK++++ + + G E
Sbjct: 611 NNNVGNSKDDLIGMIQHGAKE 631
Score = 170 (64.9 bits), Expect = 2.3e-35, Sum P(4) = 2.3e-35
Identities = 48/174 (27%), Positives = 82/174 (47%)
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
+ +V DEAH IKN + ++ ++ + R+ +TG+PLQNNL E + +++F+ G S
Sbjct: 262 EYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDS 321
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHI--LYEQLKGFVQRMDMNVVKKDLPPKT 992
+F F N Q++ E+ K Q + L++ L F+ R V+K L PK
Sbjct: 322 DQFDEAFDN-----QNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKI 376
Query: 993 VFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ + ++ +Q YKR L+ N V + + L + NHP
Sbjct: 377 ETNVYIGMTDMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHP 430
Score = 122 (48.0 bits), Expect = 2.3e-35, Sum P(4) = 2.3e-35
Identities = 41/132 (31%), Positives = 66/132 (50%)
Query: 717 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
PS I KL+ +Q+ G+ W +I SG ILA MGLGKT Q I+FL
Sbjct: 131 PSYIKEGKLREYQIQGLN--W--LISLYENRLSG------ILADEMGLGKTLQTISFL-G 179
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK-- 833
+R + +++ P + L NW++EF KW P + V +L+ +++RA ++
Sbjct: 180 YLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPD----VNVVVLQG-DKEQRASIIKDQL 234
Query: 834 WRAKGGVFLIGY 845
+ AK V + +
Sbjct: 235 YTAKFDVLITSF 246
Score = 41 (19.5 bits), Expect = 4.6e-27, Sum P(4) = 4.6e-27
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 668 QFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAH 727
+F+ + +N V L GD ASI + D + +V+ E +R S++
Sbjct: 206 EFAKWTPDVNVVVLQGDKEQRASI--IKDQLYTAKFDVLITSFEMILREKSALQ------ 257
Query: 728 QVVGIRFMWENII-QSIRKVKSGDKGLGCIL 757
+F WE I+ ++K+ D L I+
Sbjct: 258 -----KFRWEYIVVDEAHRIKNEDSSLSKII 283
Score = 40 (19.1 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 285 GNSDDPFVADAIANEKELALSEEQRKKFRKVKE 317
G+SD A N +EL E+QR++ + V E
Sbjct: 319 GDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSE 351
Score = 38 (18.4 bits), Expect = 2.3e-35, Sum P(4) = 2.3e-35
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 1330 HKLPLSHEGCSDKLMESLL 1348
HK LS E DK+ + +L
Sbjct: 954 HKYGLSTENLYDKIKDEIL 972
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 246 (91.7 bits), Expect = 2.3e-35, Sum P(4) = 2.3e-35
Identities = 67/201 (33%), Positives = 109/201 (54%)
Query: 1110 TYKELDY-SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWK 1168
T + L Y SGKM++L +L G + L+FSQ LD++E Y +
Sbjct: 444 TDEHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYC------------YF 491
Query: 1169 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS 1228
+ ++ R+DG T +R + ++ +N P +++ L++TRAG LGINL SA+ VI+ D
Sbjct: 492 RDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKF-IFLLTTRAGGLGINLTSADIVILYDSD 550
Query: 1229 WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR-QQVHR 1287
WNP DLQA+ RA R GQ K V +R + +EEK+ +R K L V+ + +Q++
Sbjct: 551 WNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQMNS 610
Query: 1288 TI----SKEEMLHLFEFGDDE 1304
SK++++ + + G E
Sbjct: 611 NNNVGNSKDDLIGMIQHGAKE 631
Score = 170 (64.9 bits), Expect = 2.3e-35, Sum P(4) = 2.3e-35
Identities = 48/174 (27%), Positives = 82/174 (47%)
Query: 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
+ +V DEAH IKN + ++ ++ + R+ +TG+PLQNNL E + +++F+ G S
Sbjct: 262 EYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDS 321
Query: 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHI--LYEQLKGFVQRMDMNVVKKDLPPKT 992
+F F N Q++ E+ K Q + L++ L F+ R V+K L PK
Sbjct: 322 DQFDEAFDN-----QNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKI 376
Query: 993 VFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+ + ++ +Q YKR L+ N V + + L + NHP
Sbjct: 377 ETNVYIGMTDMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHP 430
Score = 122 (48.0 bits), Expect = 2.3e-35, Sum P(4) = 2.3e-35
Identities = 41/132 (31%), Positives = 66/132 (50%)
Query: 717 PSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
PS I KL+ +Q+ G+ W +I SG ILA MGLGKT Q I+FL
Sbjct: 131 PSYIKEGKLREYQIQGLN--W--LISLYENRLSG------ILADEMGLGKTLQTISFL-G 179
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK-- 833
+R + +++ P + L NW++EF KW P + V +L+ +++RA ++
Sbjct: 180 YLRYIKHIDGPFIVIVPKSTLDNWRREFAKWTPD----VNVVVLQG-DKEQRASIIKDQL 234
Query: 834 WRAKGGVFLIGY 845
+ AK V + +
Sbjct: 235 YTAKFDVLITSF 246
Score = 41 (19.5 bits), Expect = 4.6e-27, Sum P(4) = 4.6e-27
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 668 QFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAH 727
+F+ + +N V L GD ASI + D + +V+ E +R S++
Sbjct: 206 EFAKWTPDVNVVVLQGDKEQRASI--IKDQLYTAKFDVLITSFEMILREKSALQ------ 257
Query: 728 QVVGIRFMWENII-QSIRKVKSGDKGLGCIL 757
+F WE I+ ++K+ D L I+
Sbjct: 258 -----KFRWEYIVVDEAHRIKNEDSSLSKII 283
Score = 40 (19.1 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 285 GNSDDPFVADAIANEKELALSEEQRKKFRKVKE 317
G+SD A N +EL E+QR++ + V E
Sbjct: 319 GDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSE 351
Score = 38 (18.4 bits), Expect = 2.3e-35, Sum P(4) = 2.3e-35
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 1330 HKLPLSHEGCSDKLMESLL 1348
HK LS E DK+ + +L
Sbjct: 954 HKYGLSTENLYDKIKDEIL 972
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 258 (95.9 bits), Expect = 2.4e-35, Sum P(4) = 2.4e-35
Identities = 66/190 (34%), Positives = 101/190 (53%)
Query: 1138 LVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197
L+F+Q LD++E L K P + R+DG E+ +R +V +FN +
Sbjct: 1783 LIFAQMKSMLDIVENELFKKHLPSVT---------YLRMDGSVETMKRHSIVNQFNS--D 1831
Query: 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 1257
+ L++T G LG+NL A+ VI ++ WNP DLQA+ RA R GQ K V YRL+
Sbjct: 1832 PTIDVLLLTTHVGGLGLNLTGADTVIFLEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLIT 1891
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFGDDENPDPL--TAVSK 1314
GT+EEKI Q K +A V++ +T+S E+L+LF++ DD+ T ++
Sbjct: 1892 SGTLEEKIMGLQKFKLNIANTVINHDNSSLQTMSTNELLNLFDYSDDQKSQQSKSTNLAD 1951
Query: 1315 ENGQGSSQNT 1324
N + S +T
Sbjct: 1952 YNNESSISDT 1961
Score = 252 (93.8 bits), Expect = 2.4e-35, Sum P(4) = 2.4e-35
Identities = 86/307 (28%), Positives = 146/307 (47%)
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL-- 773
+P I+ +L+ +Q G+ W + + K K L IL MGLGKT Q I +
Sbjct: 1369 LPIRINTELRKYQQDGVN--W---LAFLNKYK-----LHGILCDDMGLGKTLQTICIIAG 1418
Query: 774 --------YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW-RPSELKPLRVFMLEDVSR 824
Y + + +L++ P +++ +W E K+ S +KP+ +M
Sbjct: 1419 DDYHRRVNYQEKGTPDFAPLPSLVICPPSLVGHWFYEIKKFCSDSTMKPM-TYMGNP--S 1475
Query: 825 DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHM 884
+R+A+ +K++ V ++ Y RN D ++ E+ H + + DE H+
Sbjct: 1476 ERQAQR-SKFKDHN-VLIMSYDIMRN--------DIDILSEM-HF-----NYCILDEGHI 1519
Query: 885 IKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNP 944
IKN + TQA K+++ R+ L+G+P+QNN++E + + DF+ GFLG+ F + P
Sbjct: 1520 IKNAKTKLTQAAKRLQSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKLFNELYSKP 1579
Query: 945 IENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQ 1004
I + +++D + L+ Q+ F+ R V DLPPK + LSPLQ
Sbjct: 1580 ILASKDPKCSTKDQEAGVLAMEALHRQVLPFLLRRLKEDVLADLPPKIIQDRYCNLSPLQ 1639
Query: 1005 RRLYKRF 1011
RLY F
Sbjct: 1640 IRLYDYF 1646
Score = 40 (19.1 bits), Expect = 2.4e-35, Sum P(4) = 2.4e-35
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 296 IANEKELALSEEQRKKFRKVKEEDDAN 322
+ EKE +E+ K+F++VK ++ N
Sbjct: 263 LVKEKE---NEKPTKRFKEVKSSNNNN 286
Score = 39 (18.8 bits), Expect = 2.4e-35, Sum P(4) = 2.4e-35
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 370 SNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSN 407
SN + +G+ GNN + N T L + L++
Sbjct: 563 SNNNSSNGNGNGNNGNESSSNSSTPPLLPHTQHSKLAH 600
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 238 (88.8 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 64/166 (38%), Positives = 88/166 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK ++L +L G K L+FSQ LD++ Y + ++ RL
Sbjct: 598 SGKFLILDRMLPELKIRGHKVLLFSQMTRMLDILMDYCHF------------RNFNFSRL 645
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG +ER+K + FN + V L+STRAG LGINL +A+ VII D WNP DLQ
Sbjct: 646 DGSMSYTEREKNMHSFNT--DPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQ 703
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282
A R R GQTKPV YRL+ T+++KI +R K L ++ +
Sbjct: 704 AQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHK 749
Score = 237 (88.5 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 85/282 (30%), Positives = 133/282 (47%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT-PVNVLHNWKQEFMKWRP 808
+ G+ ILA MGLGKT Q IA T + G+ +V P++ L NW EF ++ P
Sbjct: 239 ENGINGILADEMGLGKTVQCIA---TIALMIQRGVPGPFLVCGPLSTLPNWMAEFQRFTP 295
Query: 809 SELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICH 868
E+ P ML S+ R +L+ + G I SF ++DRN+ + C+
Sbjct: 296 -EI-PT---MLYHGSQQERRKLVNHIHKRKGTLQIHPVVIT--SFEIAMRDRNVLQH-CY 347
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
L+ DE H IKN + + LK+ ++ LTG+PLQNNL E + +++F+
Sbjct: 348 W-----KYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLP 402
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRS----HILYEQLKGFVQRMDMNVV 984
F + F I + + T+ED+ I +R H+L++ L F+ R + V
Sbjct: 403 DVFDDLKSFESWFD--ITS---LSETAEDI-IAKEREQNVLHMLHQILTPFLLRRLKSDV 456
Query: 985 KKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEK 1026
++PPK V+ LS Q Y ++ TN S+EK
Sbjct: 457 ALEVPPKREVVVYAPLSKKQEVFYTAIVN-RTITNMFGSSEK 497
Score = 194 (73.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 51/117 (43%), Positives = 64/117 (54%)
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG +ER+K + FN + V L+STRAG LGINL +A+ VII D WNP D
Sbjct: 644 RLDGSMSYTEREKNMHSFNT--DPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSD 701
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISK 1291
LQA R R GQTKPV YRL+ T+++KI +R K R + K
Sbjct: 702 LQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAK--------------RKLEK 744
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 263 (97.6 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 74/218 (33%), Positives = 114/218 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1059 SGKLMLLFKMLKKLKEGGHRVLIFSQMTKMLDLLEDFLEN------------EGYKYERI 1106
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG RQ+ ++RFN P + L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1107 DGGVTGGMRQEAIDRFNAPGAPQF-VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1165
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ K V YR + ++EE+I QV K+ + +V R + ++SK+
Sbjct: 1166 AFSRAHRIGQNKKVMIYRFVTKASVEERI--TQVAKKKMMLTHLVVRPGLGSKAGSMSKQ 1223
Query: 1293 EMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKH 1330
E+ + +FG ++ E G+G ++ + ++ H
Sbjct: 1224 ELDDILKFGTEQ------LFKDELGEGDNKEEDSSVIH 1255
Score = 211 (79.3 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 82/300 (27%), Positives = 135/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 753 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 811
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
V + + R E + A +GG + F + + I A
Sbjct: 812 YVVTYVGDKDSRAVIRENEFTFEDNAIRGGKKASKMKKEAAVKFHVLLTSYELIT-IDQA 870
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ D LV DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 871 ILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNLEELFHLLNFL- 929
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 986
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 930 -----TPERFNN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFKH 975
Query: 987 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 976 -MPSKTELIVRVELSPMQKKYYKYILTRNFEALNTRGGGNQV--SLLNVVMDLKKCCNHP 1032
Score = 63 (27.2 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 515 KDCKCLLEKKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACL 570
K K +KK +DAD E YC C + +++ C +C + C+ ++ A
Sbjct: 352 KKAKSSKKKKKMDEDADGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMERA-- 409
Query: 571 SDEVQASCWQC 581
E SC C
Sbjct: 410 -PEGTWSCPHC 419
Score = 47 (21.6 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 859 DRNMAREICHALQDGPDILVCD 880
D +M E C +DG ++L CD
Sbjct: 454 DHHM--EFCRVCKDGGELLCCD 473
Score = 43 (20.2 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 375 QDYCEVCQQGGEIILCD 391
Score = 40 (19.1 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 1080 KPRNMNDFLQGKNDDGFFQKDWWND 1104
KP N ND Q +D ++DW +D
Sbjct: 1347 KPVNYNDCSQ---EDRGSRRDWQDD 1368
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 247 (92.0 bits), Expect = 3.7e-35, Sum P(2) = 3.7e-35
Identities = 65/166 (39%), Positives = 88/166 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK ++L +L G K L+FSQ LD++ Y + ++ RL
Sbjct: 598 SGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHL------------RDFNFSRL 645
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG SER+K + FN + V L+STRAG LGINL +A+ VII D WNP DLQ
Sbjct: 646 DGSMSYSEREKNMHSFNT--DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQ 703
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282
A R R GQTKPV YRL+ T+++KI +R K L ++ +
Sbjct: 704 AQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHK 749
Score = 227 (85.0 bits), Expect = 3.7e-35, Sum P(2) = 3.7e-35
Identities = 83/282 (29%), Positives = 131/282 (46%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT-PVNVLHNWKQEFMKWRP 808
+ G+ ILA MGLGKT Q IA T + G+ +V P++ L NW EF ++ P
Sbjct: 239 ENGINGILADEMGLGKTVQCIA---TIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTP 295
Query: 809 SELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICH 868
P ML +++ R +L+ + G I SF ++DRN A + C+
Sbjct: 296 DI--PT---MLYHGTQEERQKLVRNIYKRKGTLQIHPVVIT--SFEIAMRDRN-ALQHCY 347
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
L+ DE H IKN + + LK+ ++ LTG+PLQNNL E + +++F+
Sbjct: 348 W-----KYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLP 402
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRS----HILYEQLKGFVQRMDMNVV 984
F + F I + + T+ED+ I +R H+L++ L F+ R + V
Sbjct: 403 DVFDDLKSFESWFD--ITS---LSETAEDI-IAKEREQNVLHMLHQILTPFLLRRLKSDV 456
Query: 985 KKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEK 1026
++PPK V+ LS Q Y ++ N S+EK
Sbjct: 457 ALEVPPKREVVVYAPLSKKQEIFYTAIVN-RTIANMFGSSEK 497
Score = 199 (75.1 bits), Expect = 4.6e-30, Sum P(2) = 4.6e-30
Identities = 52/117 (44%), Positives = 64/117 (54%)
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG SER+K + FN + V L+STRAG LGINL +A+ VII D WNP D
Sbjct: 644 RLDGSMSYSEREKNMHSFNT--DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSD 701
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISK 1291
LQA R R GQTKPV YRL+ T+++KI +R K R + K
Sbjct: 702 LQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAK--------------RKLEK 744
Score = 47 (21.6 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 938 RNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQR 978
+N+ +N EN TN ED++ + I+ ++L V++
Sbjct: 153 KNKKENEDENSSSTNLCVEDLQKNKDSNSIIKDRLSETVRQ 193
>RGD|1564130 [details] [associations]
symbol:Btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, (Mot1 homolog, S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1564130 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AC096310
IPI:IPI00370629 PRIDE:F1LW16 Ensembl:ENSRNOT00000024465
Uniprot:F1LW16
Length = 1848
Score = 258 (95.9 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 101/373 (27%), Positives = 164/373 (43%)
Query: 701 YIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHT 760
++ ++ K E +IP I+A+L+ +Q G+ W + + K K L IL
Sbjct: 1242 FLEQLLDGKKLENYKIPVPINAELRKYQQDGVN--W---LAFLNKYK-----LHGILCDD 1291
Query: 761 MGLGKTFQVIAFL----------YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
MGLGKT Q I L Y + +L+V P + +W E K+ E
Sbjct: 1292 MGLGKTLQSICILAGDHCQRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSRE 1351
Query: 811 -LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRN-LSFGKHVKDRNMAREICH 868
L PL + R R L + + + Y RN + F +++K C
Sbjct: 1352 YLNPLH-YTGPPTERIR----LQHQVKRHNLIVASYDVVRNDIDFFRNIKFN-----YC- 1400
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ DE H+IKN + ++A+KQ+ RI L+G+P+QNN++E + + DF+
Sbjct: 1401 ---------ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMP 1451
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
GFLG+ +F R+ PI + S+S + + L+ Q+ F+ R V +DL
Sbjct: 1452 GFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDL 1511
Query: 989 PPKTVFVITVKLSPLQRRLYKRFL------DLHGFTNDRVSNEKIRKS-------FFAGY 1035
PPK + LSPLQ +LY+ F D+ + +E+ K F
Sbjct: 1512 PPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQAL 1571
Query: 1036 QALAQIWNHPGIL 1048
Q L ++ NHP ++
Sbjct: 1572 QYLRKLCNHPALV 1584
Score = 231 (86.4 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 62/187 (33%), Positives = 95/187 (50%)
Query: 1138 LVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197
L+F Q LD++E L K P + RLDG +R +V RFN +
Sbjct: 1647 LIFCQLKSMLDIVEHDLLKPHLPSVT---------YLRLDGSIPPGQRHSIVSRFNN--D 1695
Query: 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 1257
+ L++T G LG+NL A+ V+ V+ WNP DLQA+ RA R GQ + V YRL+
Sbjct: 1696 PSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLIT 1755
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFGDDENPDPLTAVSKEN 1316
GT+EEKI Q K +A V+ ++ +++ +++L LF D + A S +
Sbjct: 1756 RGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEK--ADSSTS 1813
Query: 1317 GQGSSQN 1323
G+ S ++
Sbjct: 1814 GKASMKS 1820
Score = 47 (21.6 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 100 LEAAVEDEMTVYKEQWEAALDELETESAHLLEQL-DGAGIE 139
LEA + D + +E L +L+ + H LEQL DG +E
Sbjct: 1218 LEAGIPDPPNMSEE-----LIQLKAKERHFLEQLLDGKKLE 1253
Score = 41 (19.5 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 12/61 (19%), Positives = 29/61 (47%)
Query: 684 DLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSI 743
DL AG+S +L + G +V+ +G E +++ A + + +W+ ++ +
Sbjct: 999 DLPAGSSGNILVELDEGQKPYLVQRRGAEFAL--TTVVKHFGAEMALKLPHLWDAMVGPL 1056
Query: 744 R 744
+
Sbjct: 1057 K 1057
Score = 37 (18.1 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 185 FLQTERPVRRRHGK 198
FL TER R+GK
Sbjct: 1453 FLGTERQFAARYGK 1466
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 258 (95.9 bits), Expect = 4.2e-35, Sum P(5) = 4.2e-35
Identities = 66/188 (35%), Positives = 99/188 (52%)
Query: 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 1177
GK+ L +L G + L+F+Q LD++E +L+ G L+ RLD
Sbjct: 2054 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY------HGHLY------LRLD 2101
Query: 1178 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQA 1237
G T +RQ L+ERFN +KR+ C ++STR+G +G+NL A+ V+ D WNPT D QA
Sbjct: 2102 GSTRVEQRQALMERFNA--DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQA 2159
Query: 1238 IYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLH- 1296
R R GQT+ V YRL++ T+EE I K+ K L ++ K++ +
Sbjct: 2160 QDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRE 2219
Query: 1297 LFEFGDDE 1304
LF+ +E
Sbjct: 2220 LFDMPLEE 2227
Score = 189 (71.6 bits), Expect = 4.2e-35, Sum P(5) = 4.2e-35
Identities = 54/171 (31%), Positives = 85/171 (49%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
L+ DEA IKN ++ Q+L QRR+ LTG+PLQN+LME + ++ F+ S E
Sbjct: 751 LILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHRE 810
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F+ F NP+ G S + ++ + L++ L+ F+ R V+K +P K VI
Sbjct: 811 FKEWFSNPL-TGMIEGSQEYNEGLVKR----LHKVLRPFLLRRVKVDVEKQMPKKYEHVI 865
Query: 997 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 1047
+LS QR LY F+ T + ++ S L ++ NHP +
Sbjct: 866 RCRLSKRQRCLYDDFM-AQTTTKETLATGHFM-SVINILMQLRKVCNHPNL 914
Score = 117 (46.2 bits), Expect = 4.2e-35, Sum P(5) = 4.2e-35
Identities = 38/135 (28%), Positives = 64/135 (47%)
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL-Y 774
IP + +L+ +Q +G+ ++ V +K L ILA MGLGKT Q I+ L +
Sbjct: 618 IPLLLRGQLREYQHIGLDWL----------VTMYEKKLNGILADEMGLGKTIQTISLLAH 667
Query: 775 TAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW 834
A N G LI+ P +V+ NW+ E +W PS ++ ++R+ + W
Sbjct: 668 LACEKGNWGPH--LIIVPTSVMLNWEMELKRWCPS----FKILTYYGAQKERKLKRQG-W 720
Query: 835 RAKGGVFLIGYTAFR 849
K F + T+++
Sbjct: 721 -TKPNAFHVCITSYK 734
Score = 42 (19.8 bits), Expect = 4.2e-35, Sum P(5) = 4.2e-35
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 81 VKLKNEVREELAQALHGD--DLEAAVEDEMTVYKEQWEAALDELETESAHLLE 131
VK V + Q H D D E ++ +E AA ++LE E H +E
Sbjct: 381 VKPPPSVTQRNKQPWHPDEDDEEFTANEDEAEDEEDTIAAEEQLEGEVDHAME 433
Score = 40 (19.1 bits), Expect = 6.6e-35, Sum P(5) = 6.6e-35
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 306 EEQRKKFRKVKEEDDANM 323
EEQR+K + + E+ A +
Sbjct: 174 EEQRQKEERARREEQAKL 191
Score = 39 (18.8 bits), Expect = 4.2e-35, Sum P(5) = 4.2e-35
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 449 SDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQS 486
S ++D +++ + E+HS E + ++ S +S
Sbjct: 500 SSQSDSAEEQSEDEDEEHSEEEETSESSESEESESEES 537
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 278 (102.9 bits), Expect = 4.2e-35, Sum P(4) = 4.2e-35
Identities = 76/210 (36%), Positives = 111/210 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1042 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1089
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1090 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1148
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT--ISKEEM 1294
A RA R GQ K V YR + ++EE+I + K L VV +T +SK+E+
Sbjct: 1149 AFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQEL 1208
Query: 1295 LHLFEFGDDEN-PDPLTAVSKENGQGSSQN 1323
+ +FG +E D T +N +G +
Sbjct: 1209 DDILKFGTEELFKDEATDGGGDNKEGEDSS 1238
Score = 210 (79.0 bits), Expect = 4.2e-35, Sum P(4) = 4.2e-35
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 736 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 794
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
V + + R E + A +GG ++ F + + I A
Sbjct: 795 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 853
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 854 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 912
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 986
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 913 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 957
Query: 987 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 958 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1015
Score = 56 (24.8 bits), Expect = 4.2e-35, Sum P(4) = 4.2e-35
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 365 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 407
Score = 47 (21.6 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 859 DRNMAREICHALQDGPDILVCD 880
D +M E C +DG ++L CD
Sbjct: 439 DHHM--EFCRVCKDGGELLCCD 458
Score = 43 (20.2 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 363 QDYCEVCQQGGEIILCD 379
Score = 41 (19.5 bits), Expect = 4.2e-35, Sum P(4) = 4.2e-35
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 299 EKELALSEEQRKKFRKVKEEDDANMD 324
+K+L +E++ K ++ +EE++ + D
Sbjct: 110 KKKLGPKKEKKSKSKRKEEEEEEDED 135
Score = 38 (18.4 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 1078 GEKPRNMNDFLQGKN 1092
GE P++++D Q KN
Sbjct: 1680 GETPKDLSDEKQKKN 1694
Score = 37 (18.1 bits), Expect = 5.2e-34, Sum P(3) = 5.2e-34
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 645 GEETKRKIAIEKERQERLK 663
G++ K+K+ +KE++ + K
Sbjct: 106 GKKKKKKLGPKKEKKSKSK 124
Score = 37 (18.1 bits), Expect = 2.2e-10, Sum P(4) = 2.2e-10
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 1181 ESSERQKLVERFNEPLNKRVKCT 1203
E E+ ++ ER EP+ K T
Sbjct: 1619 EKVEKAEVKERTEEPMETEAKGT 1641
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 278 (102.9 bits), Expect = 4.4e-35, Sum P(4) = 4.4e-35
Identities = 76/210 (36%), Positives = 111/210 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1071 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1118
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1119 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1177
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT--ISKEEM 1294
A RA R GQ K V YR + ++EE+I + K L VV +T +SK+E+
Sbjct: 1178 AFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQEL 1237
Query: 1295 LHLFEFGDDEN-PDPLTAVSKENGQGSSQN 1323
+ +FG +E D T +N +G +
Sbjct: 1238 DDILKFGTEELFKDEATDGGGDNKEGEDSS 1267
Score = 210 (79.0 bits), Expect = 4.4e-35, Sum P(4) = 4.4e-35
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 765 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 823
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
V + + R E + A +GG ++ F + + I A
Sbjct: 824 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 882
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 883 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 941
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 986
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 942 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 986
Query: 987 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 987 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1044
Score = 56 (24.8 bits), Expect = 4.4e-35, Sum P(4) = 4.4e-35
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 394 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 436
Score = 47 (21.6 bits), Expect = 1.9e-18, Sum P(4) = 1.9e-18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 859 DRNMAREICHALQDGPDILVCD 880
D +M E C +DG ++L CD
Sbjct: 468 DHHM--EFCRVCKDGGELLCCD 487
Score = 43 (20.2 bits), Expect = 3.6e-17, Sum P(3) = 3.6e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 392 QDYCEVCQQGGEIILCD 408
Score = 43 (20.2 bits), Expect = 5.7e-11, Sum P(4) = 5.7e-11
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1078 GEKPRNMNDFLQGKN 1092
GE P+++ND Q KN
Sbjct: 1699 GETPKDLNDEKQKKN 1713
Score = 41 (19.5 bits), Expect = 4.4e-35, Sum P(4) = 4.4e-35
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 299 EKELALSEEQRKKF-RKVKEEDDANMD 324
+K+L +E++ K RK +EE+D + D
Sbjct: 137 KKKLGPKKEKKSKSKRKEEEEEDEDDD 163
Score = 37 (18.1 bits), Expect = 5.4e-34, Sum P(3) = 5.4e-34
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 645 GEETKRKIAIEKERQERLK 663
G++ K+K+ +KE++ + K
Sbjct: 133 GKKKKKKLGPKKEKKSKSK 151
>UNIPROTKB|F1N507 [details] [associations]
symbol:Bt.112326 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:DAAA02058811
EMBL:DAAA02058810 IPI:IPI00685441 Ensembl:ENSBTAT00000021438
Uniprot:F1N507
Length = 1845
Score = 257 (95.5 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 101/373 (27%), Positives = 164/373 (43%)
Query: 701 YIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHT 760
++ ++ K E +IP I+A+L+ +Q G+ W + + K K L IL
Sbjct: 1239 FLEQLLDGKKLENYKIPVPINAELRKYQQDGVN--W---LAFLNKYK-----LHGILCDD 1288
Query: 761 MGLGKTFQVIAFL----------YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
MGLGKT Q I L Y + +L+V P + +W E K+ E
Sbjct: 1289 MGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSRE 1348
Query: 811 -LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRN-LSFGKHVKDRNMAREICH 868
L PL + R R L + + + Y RN + F +++K C
Sbjct: 1349 YLNPLH-YTGPPTERIR----LQHQVKRHNLVVASYDVVRNDIDFFRNIKFN-----YC- 1397
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ DE H+IKN + ++A+KQ+ RI L+G+P+QNN++E + + DF+
Sbjct: 1398 ---------ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMP 1448
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
GFLG+ +F R+ PI + S+S + + L+ Q+ F+ R V +DL
Sbjct: 1449 GFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDL 1508
Query: 989 PPKTVFVITVKLSPLQRRLYKRFL------DLHGFTNDRVSNEKIRKS-------FFAGY 1035
PPK + LSPLQ +LY+ F D+ + +E+ K F
Sbjct: 1509 PPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQAL 1568
Query: 1036 QALAQIWNHPGIL 1048
Q L ++ NHP ++
Sbjct: 1569 QYLRKLCNHPALV 1581
Score = 231 (86.4 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 59/167 (35%), Positives = 86/167 (51%)
Query: 1138 LVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197
L+F Q LD++E L K P + RLDG +R +V RFN +
Sbjct: 1644 LIFCQLKSMLDIVEHDLLKPHLPSVT---------YLRLDGSIPPGQRHSIVSRFNN--D 1692
Query: 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 1257
+ L++T G LG+NL A+ V+ V+ WNP DLQA+ RA R GQ K V YRL+
Sbjct: 1693 PSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQVKVVNVYRLIT 1752
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFGDD 1303
GT+EEKI Q K +A V+ ++ +++ +++L LF D
Sbjct: 1753 RGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKD 1799
Score = 47 (21.6 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 100 LEAAVEDEMTVYKEQWEAALDELETESAHLLEQL-DGAGIE 139
LEA + D + +E L +L+ + H LEQL DG +E
Sbjct: 1215 LEAGIPDPPNMSEE-----LIQLKAKERHFLEQLLDGKKLE 1250
Score = 40 (19.1 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 581 CCC-CSPSLLKRLTSEL 596
CCC C PS+ +T E+
Sbjct: 684 CCCICDPSV-NVVTQEI 699
Score = 37 (18.1 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 185 FLQTERPVRRRHGK 198
FL TER R+GK
Sbjct: 1450 FLGTERQFAARYGK 1463
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 269 (99.8 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 80/235 (34%), Positives = 117/235 (49%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ L +LT + G + L++SQ +DL+E Y+ +++K + RL
Sbjct: 1110 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYM-----------VYRK-HTYMRL 1157
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG ++ SER+ +V F + L+STRAG LGINL +A+ VI D WNPT D Q
Sbjct: 1158 DGSSKISERRDMVADFQN--RNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1215
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR-TISKEEML 1295
A+ RA R GQTK V YRL+ GT+EE+I +R K + V+ T+ +E++
Sbjct: 1216 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1275
Query: 1296 HLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGK 1350
L D+E L +E Q + TN + K K + L GK
Sbjct: 1276 SLL-LDDEELEKKLRLRQEEKRQ--QEETNRVKERKRKREKYAEKKKKEDELDGK 1327
Score = 218 (81.8 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 71/261 (27%), Positives = 125/261 (47%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
++G+ ILA MGLGKT Q IA L N+ LI++P + L+NW QEF ++ P
Sbjct: 543 EQGINGILADEMGLGKTVQSIALLAHLAERENIW-GPFLIISPASTLNNWHQEFTRFVPK 601
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA-REICH 868
+V DR+ + W K L YT ++ F + + +++ +
Sbjct: 602 ----FKVLPYWGNPHDRKV-IRRFWSQKT---L--YT--QDAPFHVVITSYQLVVQDVKY 649
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ +V DEA +K++ + + L Q +C+ R+ LTG+P+QN + E + ++ F+
Sbjct: 650 FQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 709
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
S EF F IE+ S ++ ++ R H++ LK F+ R V+ +L
Sbjct: 710 TLFDSHEEFNEWFSKDIESHAENKSAIDENQL--SRLHMI---LKPFMLRRIKKDVENEL 764
Query: 989 PPKTVFVITVKLSPLQRRLYK 1009
K ++ +L+ Q+ LY+
Sbjct: 765 SDKIEILMYCQLTSRQKLLYQ 785
Score = 127 (49.8 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 43/156 (27%), Positives = 73/156 (46%)
Query: 658 RQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGY-----IVNVVREKGEE 712
+ + LK+ + + S D S A++ + TG+ + N GE+
Sbjct: 457 KAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAANKSGTGFGESYSLANPSIRAGED 516
Query: 713 AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF 772
+ P+ + KLK +Q+ G+ ++ N+ + +G+ ILA MGLGKT Q IA
Sbjct: 517 IPQ-PTIFNGKLKGYQLKGMNWL-ANLYE---------QGINGILADEMGLGKTVQSIAL 565
Query: 773 LYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
L N+ LI++P + L+NW QEF ++ P
Sbjct: 566 LAHLAERENIW-GPFLIISPASTLNNWHQEFTRFVP 600
Score = 51 (23.0 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 963 QRSHILYEQLKGFVQRMDMNVVKKDLP 989
++ H+ EQL +++ +++VKK+LP
Sbjct: 273 KKKHLSIEQLNARRRKVWLSIVKKELP 299
Score = 47 (21.6 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 644 LGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSV 679
L + K KI+IE Q + S Q ++ S LMN V
Sbjct: 783 LYQALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLV 818
Score = 45 (20.9 bits), Expect = 4.9e-35, Sum P(3) = 4.9e-35
Identities = 15/55 (27%), Positives = 21/55 (38%)
Query: 453 DVVKDECSTKLEDHSVSPE-NINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPH 506
D +++E KLED S+ + +I N S F A N H H
Sbjct: 417 DGIQEEILRKLEDSSMQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIH 471
Score = 42 (19.8 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1108 EHTYKELDYSGKMVLLLDILTMCSNMGD 1135
+HTY LD S K+ D++ N D
Sbjct: 1151 KHTYMRLDGSSKISERRDMVADFQNRND 1178
Score = 37 (18.1 bits), Expect = 5.3e-11, Sum P(3) = 5.3e-11
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 1074 NVVIGEKPRNMNDFLQGKNDDGFFQKD 1100
N+VI P N L DD F D
Sbjct: 1334 NLVIPFVPSADNSNLSADGDDSFISVD 1360
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 278 (102.9 bits), Expect = 5.2e-35, Sum P(4) = 5.2e-35
Identities = 76/210 (36%), Positives = 111/210 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1042 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1089
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1090 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1148
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT--ISKEEM 1294
A RA R GQ K V YR + ++EE+I + K L VV +T +SK+E+
Sbjct: 1149 AFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQEL 1208
Query: 1295 LHLFEFGDDEN-PDPLTAVSKENGQGSSQN 1323
+ +FG +E D T +N +G +
Sbjct: 1209 DDILKFGTEELFKDEATDGGGDNKEGEDSS 1238
Score = 210 (79.0 bits), Expect = 5.2e-35, Sum P(4) = 5.2e-35
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 736 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 794
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
V + + R E + A +GG ++ F + + I A
Sbjct: 795 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 853
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 854 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 912
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 986
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 913 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 957
Query: 987 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 958 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1015
Score = 56 (24.8 bits), Expect = 5.2e-35, Sum P(4) = 5.2e-35
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 365 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 407
Score = 47 (21.6 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 859 DRNMAREICHALQDGPDILVCD 880
D +M E C +DG ++L CD
Sbjct: 439 DHHM--EFCRVCKDGGELLCCD 458
Score = 43 (20.2 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 363 QDYCEVCQQGGEIILCD 379
Score = 43 (20.2 bits), Expect = 6.7e-11, Sum P(4) = 6.7e-11
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1078 GEKPRNMNDFLQGKN 1092
GE P+++ND Q KN
Sbjct: 1670 GETPKDLNDEKQKKN 1684
Score = 40 (19.1 bits), Expect = 5.2e-35, Sum P(4) = 5.2e-35
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 299 EKELALSEEQRKKFRKVKEEDDANMD 324
+K+L +E++ K ++ +EE++ + D
Sbjct: 110 KKKLGPKKEKKSKSKRKEEEEEEDDD 135
Score = 37 (18.1 bits), Expect = 5.1e-34, Sum P(3) = 5.1e-34
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 645 GEETKRKIAIEKERQERLK 663
G++ K+K+ +KE++ + K
Sbjct: 106 GKKKKKKLGPKKEKKSKSK 124
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 278 (102.9 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 76/210 (36%), Positives = 111/210 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1049 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1096
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1097 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1155
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT--ISKEEM 1294
A RA R GQ K V YR + ++EE+I + K L VV +T +SK+E+
Sbjct: 1156 AFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQEL 1215
Query: 1295 LHLFEFGDDEN-PDPLTAVSKENGQGSSQN 1323
+ +FG +E D T +N +G +
Sbjct: 1216 DDILKFGTEELFKDEATDGGGDNKEGEDSS 1245
Score = 210 (79.0 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 743 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 801
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
V + + R E + A +GG ++ F + + I A
Sbjct: 802 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 860
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 861 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 919
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 986
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 920 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 964
Query: 987 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 965 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1022
Score = 56 (24.8 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 372 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 414
Score = 47 (21.6 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 859 DRNMAREICHALQDGPDILVCD 880
D +M E C +DG ++L CD
Sbjct: 446 DHHM--EFCRVCKDGGELLCCD 465
Score = 43 (20.2 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 370 QDYCEVCQQGGEIILCD 386
Score = 43 (20.2 bits), Expect = 6.9e-11, Sum P(4) = 6.9e-11
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1078 GEKPRNMNDFLQGKN 1092
GE P+++ND Q KN
Sbjct: 1677 GETPKDLNDEKQKKN 1691
Score = 40 (19.1 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 299 EKELALSEEQRKKF-RKVKEEDDANMD 324
+K+L +E++ K RK +EE+D + D
Sbjct: 117 KKKLGPKKEKKSKSKRKEEEEEDDDDD 143
Score = 37 (18.1 bits), Expect = 5.1e-34, Sum P(3) = 5.1e-34
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 645 GEETKRKIAIEKERQERLK 663
G++ K+K+ +KE++ + K
Sbjct: 113 GKKKKKKLGPKKEKKSKSK 131
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 278 (102.9 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 76/210 (36%), Positives = 111/210 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1049 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1096
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1097 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1155
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT--ISKEEM 1294
A RA R GQ K V YR + ++EE+I + K L VV +T +SK+E+
Sbjct: 1156 AFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQEL 1215
Query: 1295 LHLFEFGDDEN-PDPLTAVSKENGQGSSQN 1323
+ +FG +E D T +N +G +
Sbjct: 1216 DDILKFGTEELFKDEATDGGGDNKEGEDSS 1245
Score = 210 (79.0 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 743 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 801
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
V + + R E + A +GG ++ F + + I A
Sbjct: 802 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 860
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 861 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 919
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 986
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 920 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 964
Query: 987 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 965 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1022
Score = 56 (24.8 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 372 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 414
Score = 47 (21.6 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 859 DRNMAREICHALQDGPDILVCD 880
D +M E C +DG ++L CD
Sbjct: 446 DHHM--EFCRVCKDGGELLCCD 465
Score = 43 (20.2 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 370 QDYCEVCQQGGEIILCD 386
Score = 43 (20.2 bits), Expect = 6.9e-11, Sum P(4) = 6.9e-11
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1078 GEKPRNMNDFLQGKN 1092
GE P+++ND Q KN
Sbjct: 1677 GETPKDLNDEKQKKN 1691
Score = 40 (19.1 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 299 EKELALSEEQRKKFRKVKEEDDANMD 324
+K+L +E++ K ++ +EE++ + D
Sbjct: 117 KKKLGPKKEKKSKSKRKEEEEEEDDD 142
Score = 37 (18.1 bits), Expect = 5.1e-34, Sum P(3) = 5.1e-34
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 645 GEETKRKIAIEKERQERLK 663
G++ K+K+ +KE++ + K
Sbjct: 113 GKKKKKKLGPKKEKKSKSK 131
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 278 (102.9 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 76/210 (36%), Positives = 111/210 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1049 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1096
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1097 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1155
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT--ISKEEM 1294
A RA R GQ K V YR + ++EE+I + K L VV +T +SK+E+
Sbjct: 1156 AFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQEL 1215
Query: 1295 LHLFEFGDDEN-PDPLTAVSKENGQGSSQN 1323
+ +FG +E D T +N +G +
Sbjct: 1216 DDILKFGTEELFKDEATDGGGDNKEGEDSS 1245
Score = 210 (79.0 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 743 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 801
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
V + + R E + A +GG ++ F + + I A
Sbjct: 802 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 860
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 861 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 919
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 986
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 920 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 964
Query: 987 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 965 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1022
Score = 56 (24.8 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 372 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 414
Score = 47 (21.6 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 859 DRNMAREICHALQDGPDILVCD 880
D +M E C +DG ++L CD
Sbjct: 446 DHHM--EFCRVCKDGGELLCCD 465
Score = 43 (20.2 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 370 QDYCEVCQQGGEIILCD 386
Score = 43 (20.2 bits), Expect = 6.9e-11, Sum P(4) = 6.9e-11
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1078 GEKPRNMNDFLQGKN 1092
GE P+++ND Q KN
Sbjct: 1677 GETPKDLNDEKQKKN 1691
Score = 40 (19.1 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 299 EKELALSEEQRKKF-RKVKEEDDANMD 324
+K+L +E++ K RK +EE+D + D
Sbjct: 117 KKKLGPKKEKKSKSKRKEEEEEDDDDD 143
Score = 37 (18.1 bits), Expect = 5.1e-34, Sum P(3) = 5.1e-34
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 645 GEETKRKIAIEKERQERLK 663
G++ K+K+ +KE++ + K
Sbjct: 113 GKKKKKKLGPKKEKKSKSK 131
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 267 (99.0 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 71/192 (36%), Positives = 106/192 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 955 SGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 1002
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1003 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1061
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ K V YR + ++EE+I QV K + +V R + +++K+
Sbjct: 1062 AFSRAHRIGQNKKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKSGSMTKQ 1119
Query: 1293 EMLHLFEFGDDE 1304
E+ + +FG +E
Sbjct: 1120 ELDDILKFGTEE 1131
Score = 211 (79.3 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 81/300 (27%), Positives = 136/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q I FLY+ + L+ P++ + NW++EF W P
Sbjct: 648 QGTDTILADEMGLGKTVQTIVFLYSLYKEQGHSKGPYLVSAPLSTIINWEREFEMWAPDF 707
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
E S R E + A + G + + F + + I A
Sbjct: 708 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELIT-IDQA 766
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 767 VLGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 825
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 987
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 826 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 871
Query: 988 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 872 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 928
Score = 61 (26.5 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 523 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 578
KK +++ D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 258 KKKRIEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 314
Query: 579 WQC 581
C
Sbjct: 315 PHC 317
Score = 51 (23.0 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 854 GKHVKDRNMAREICHALQDGPDILVCD 880
G+ +D +M E C +DG ++L CD
Sbjct: 337 GEEEEDDHM--EFCRVCKDGGELLCCD 361
Score = 44 (20.5 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 206 GFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAA 246
G K+ SE +E SD + S+N S V +C+A
Sbjct: 210 GIPSKRKKGSSSEEEEREESDFDSASIN---SSSVRSECSA 247
Score = 43 (20.2 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 273 QDYCEVCQQGGEIILCD 289
Score = 39 (18.8 bits), Expect = 1.7e-34, Sum P(4) = 1.7e-34
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 299 EKELALSEEQRKKFRKVKEEDD 320
+K+L +E++ K +K EE+D
Sbjct: 31 KKKLKEKKEKKTKRKKKDEEED 52
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 278 (102.9 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 76/210 (36%), Positives = 111/210 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1042 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1089
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1090 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1148
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT--ISKEEM 1294
A RA R GQ K V YR + ++EE+I + K L VV +T +SK+E+
Sbjct: 1149 AFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQEL 1208
Query: 1295 LHLFEFGDDEN-PDPLTAVSKENGQGSSQN 1323
+ +FG +E D T +N +G +
Sbjct: 1209 DDILKFGTEELFKDEATDGGGDNKEGEDSS 1238
Score = 210 (79.0 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 736 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 794
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
V + + R E + A +GG ++ F + + I A
Sbjct: 795 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 853
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 854 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 912
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 986
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 913 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 957
Query: 987 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 958 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1015
Score = 56 (24.8 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 365 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 407
Score = 47 (21.6 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 859 DRNMAREICHALQDGPDILVCD 880
D +M E C +DG ++L CD
Sbjct: 439 DHHM--EFCRVCKDGGELLCCD 458
Score = 43 (20.2 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 363 QDYCEVCQQGGEIILCD 379
Score = 40 (19.1 bits), Expect = 5.3e-35, Sum P(4) = 5.3e-35
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 299 EKELALSEEQRKKFRKVKEEDDANMD 324
+K+L +E++ K ++ +EE++ + D
Sbjct: 110 KKKLGPKKEKKSKSKRKEEEEEEDDD 135
Score = 38 (18.4 bits), Expect = 2.2e-10, Sum P(4) = 2.2e-10
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 1078 GEKPRNMNDFLQGKN 1092
GE P++++D Q KN
Sbjct: 1680 GETPKDLSDEKQKKN 1694
Score = 37 (18.1 bits), Expect = 5.2e-34, Sum P(3) = 5.2e-34
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 645 GEETKRKIAIEKERQERLK 663
G++ K+K+ +KE++ + K
Sbjct: 106 GKKKKKKLGPKKEKKSKSK 124
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 278 (102.9 bits), Expect = 5.5e-35, Sum P(4) = 5.5e-35
Identities = 76/210 (36%), Positives = 111/210 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1069 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1116
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1117 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1175
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT--ISKEEM 1294
A RA R GQ K V YR + ++EE+I + K L VV +T +SK+E+
Sbjct: 1176 AFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQEL 1235
Query: 1295 LHLFEFGDDEN-PDPLTAVSKENGQGSSQN 1323
+ +FG +E D T +N +G +
Sbjct: 1236 DDILKFGTEELFKDEATDGGGDNKEGEDSS 1265
Score = 210 (79.0 bits), Expect = 5.5e-35, Sum P(4) = 5.5e-35
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 763 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 821
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
V + + R E + A +GG ++ F + + I A
Sbjct: 822 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 880
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 881 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 939
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 986
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 940 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 984
Query: 987 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 985 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1042
Score = 56 (24.8 bits), Expect = 5.5e-35, Sum P(4) = 5.5e-35
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 392 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 434
Score = 47 (21.6 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 859 DRNMAREICHALQDGPDILVCD 880
D +M E C +DG ++L CD
Sbjct: 466 DHHM--EFCRVCKDGGELLCCD 485
Score = 43 (20.2 bits), Expect = 4.5e-17, Sum P(3) = 4.5e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 390 QDYCEVCQQGGEIILCD 406
Score = 43 (20.2 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1078 GEKPRNMNDFLQGKN 1092
GE P+++ND Q KN
Sbjct: 1697 GETPKDLNDEKQKKN 1711
Score = 40 (19.1 bits), Expect = 5.5e-35, Sum P(4) = 5.5e-35
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 299 EKELALSEEQRKKF-RKVKEEDDANMD 324
+K+L +E++ K RK +EE+D + D
Sbjct: 137 KKKLGPKKEKKSKSKRKEEEEEDDDDD 163
Score = 37 (18.1 bits), Expect = 5.3e-34, Sum P(3) = 5.3e-34
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 645 GEETKRKIAIEKERQERLK 663
G++ K+K+ +KE++ + K
Sbjct: 133 GKKKKKKLGPKKEKKSKSK 151
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 278 (102.9 bits), Expect = 5.7e-35, Sum P(4) = 5.7e-35
Identities = 76/210 (36%), Positives = 111/210 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1070 SGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH------------EGYKYERI 1117
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1118 DGGITGNMRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1176
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRT--ISKEEM 1294
A RA R GQ K V YR + ++EE+I + K L VV +T +SK+E+
Sbjct: 1177 AFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQEL 1236
Query: 1295 LHLFEFGDDEN-PDPLTAVSKENGQGSSQN 1323
+ +FG +E D T +N +G +
Sbjct: 1237 DDILKFGTEELFKDEATDGGGDNKEGEDSS 1266
Score = 210 (79.0 bits), Expect = 5.7e-35, Sum P(4) = 5.7e-35
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q FLY+ + + L+ P++ + NW++EF W P
Sbjct: 764 QGTDTILADEMGLGKTVQTAVFLYSLYKEGH-SKGPFLVSAPLSTIINWEREFEMWAPDM 822
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
V + + R E + A +GG ++ F + + I A
Sbjct: 823 YVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELIT-IDMA 881
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ D L+ DEAH +KN ++ + L Q ++ LTG+PLQNNL E + +++F+
Sbjct: 882 ILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFL- 940
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKK 986
+ F N + +E + + ED +I L++ L ++R+ +V K
Sbjct: 941 -----TPERFHN-LEGFLE--EFADIAKED-QIKK-----LHDMLGPHMLRRLKADVFK- 985
Query: 987 DLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHP 1045
++P KT ++ V+LSP+Q++ YK L + N R ++ S L + NHP
Sbjct: 986 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV--SLLNVVMDLKKCCNHP 1043
Score = 56 (24.8 bits), Expect = 5.7e-35, Sum P(4) = 5.7e-35
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ ++ +A E + SC C
Sbjct: 393 YCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKA---PEGKWSCPHC 435
Score = 47 (21.6 bits), Expect = 2.5e-18, Sum P(4) = 2.5e-18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 859 DRNMAREICHALQDGPDILVCD 880
D +M E C +DG ++L CD
Sbjct: 467 DHHM--EFCRVCKDGGELLCCD 486
Score = 43 (20.2 bits), Expect = 4.6e-17, Sum P(3) = 4.6e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 391 QDYCEVCQQGGEIILCD 407
Score = 40 (19.1 bits), Expect = 5.7e-35, Sum P(4) = 5.7e-35
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 299 EKELALSEEQRKKFRKVKEEDDANMD 324
+K+L +E++ K ++ +EE++ + D
Sbjct: 138 KKKLGPKKEKKSKSKRKEEEEEEDDD 163
Score = 38 (18.4 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 1078 GEKPRNMNDFLQGKN 1092
GE P++++D Q KN
Sbjct: 1714 GETPKDLSDEKQKKN 1728
Score = 37 (18.1 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 645 GEETKRKIAIEKERQERLK 663
G++ K+K+ +KE++ + K
Sbjct: 134 GKKKKKKLGPKKEKKSKSK 152
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 280 (103.6 bits), Expect = 6.4e-35, Sum P(3) = 6.4e-35
Identities = 73/211 (34%), Positives = 110/211 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGKM+LL +L G + L+FSQ + LD++ Y+ +G + RL
Sbjct: 755 SGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEY------------RGYTYQRL 802
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG S+ R+ +E +N P + ++STRAG LGINL +A+ VI+ D WNP DLQ
Sbjct: 803 DGTIPSASRRLAIEHYNAPDSSDF-AFILSTRAGGLGINLMTADTVILFDSDWNPQADLQ 861
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISK--EEM 1294
A+ RA R GQTKPV YRL++ T+EE++ +R K L + R + S+ +M
Sbjct: 862 AMARAHRIGQTKPVSVYRLVSKDTVEEEVIERARNKLLLEFITIQRGVTDKEASEIQNKM 921
Query: 1295 LHL-FEFGDDENPDPLTAVSKENGQGSSQNT 1324
G+ + D ++ + K GQ + T
Sbjct: 922 ARGGITLGEPNSTDDISRILKRRGQRMFEQT 952
Score = 165 (63.1 bits), Expect = 6.4e-35, Sum P(3) = 6.4e-35
Identities = 48/183 (26%), Positives = 87/183 (47%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
K +LA MGLGKT Q +AF+ + +R V ++V P++ + +W + F W P +
Sbjct: 463 KNRNVVLADEMGLGKTVQTVAFI-SWLRHVRRQQGPFVVVVPLSTMPSWAETFDNWSP-D 520
Query: 811 LKPLRVFMLEDVSRD--RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICH 868
L + V+ + SR+ + EL+ + F + T + + + D + +
Sbjct: 521 LNYV-VYNGNEASRNVLKEYELMVDGNPRRPKFNVLLTTYEYV-----LVDSSFLSQF-- 572
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ DEAH +KN + L++ R+ +TG+P+QNNL E ++DF+
Sbjct: 573 ----NWQFMAVDEAHRLKNRDSQLYIKLQEFNSPARLLITGTPIQNNLAELSALLDFLNP 628
Query: 929 GFL 931
G +
Sbjct: 629 GLV 631
Score = 115 (45.5 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 48/163 (29%), Positives = 79/163 (48%)
Query: 717 PSSI-SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 775
PS + + +LK QV G+ FM N +++ R V +LA MGLGKT Q +AF+ +
Sbjct: 438 PSFLHNGQLKEFQVKGVNFMAFNWVKN-RNV---------VLADEMGLGKTVQTVAFI-S 486
Query: 776 AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRD--RRAELLAK 833
+R V ++V P++ + +W + F W P +L + V+ + SR+ + EL+
Sbjct: 487 WLRHVRRQQGPFVVVVPLSTMPSWAETFDNWSP-DLNYV-VYNGNEASRNVLKEYELMVD 544
Query: 834 W---RAKGGVFLIGYT-AFRNLSFGKHVKDRNMAREICHALQD 872
R K V L Y + SF + MA + H L++
Sbjct: 545 GNPRRPKFNVLLTTYEYVLVDSSFLSQFNWQFMAVDEAHRLKN 587
Score = 85 (35.0 bits), Expect = 6.4e-35, Sum P(3) = 6.4e-35
Identities = 25/79 (31%), Positives = 37/79 (46%)
Query: 968 LYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL-HGFTNDRVSNEK 1026
L + + F+ R V+ DLPPKT +I V+LS +Q YK L + N+ +K
Sbjct: 651 LTKAISPFMLRRTKTKVESDLPPKTEKIIRVELSDVQLEYYKNILTKNYAALNEGTKGQK 710
Query: 1027 IRKSFFAGYQALAQIWNHP 1045
+S L + NHP
Sbjct: 711 --QSLLNIMMELKKASNHP 727
Score = 43 (20.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 932 GSSHEFRNRFQNPIENGQHT----NSTSEDVKIMNQRSHILYEQL--KGFVQRMDMNVV 984
G + + + QN + G T NST + +I+ +R ++EQ + ++++D++ V
Sbjct: 908 GVTDKEASEIQNKMARGGITLGEPNSTDDISRILKRRGQRMFEQTGNQAKLEQLDIDSV 966
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 252 (93.8 bits), Expect = 6.4e-35, Sum P(2) = 6.4e-35
Identities = 73/224 (32%), Positives = 110/224 (49%)
Query: 1099 KDWWNDLLHE-HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKL 1157
+D +N + H + +GK+VL+ +L G K L+FSQ + LD++E YL
Sbjct: 688 RDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYL--- 744
Query: 1158 PRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLH 1217
+ K+ + R+DGR + RQ ++RF++P + R L+ TRAG LGINL
Sbjct: 745 --------IHKRYL-YERIDGRVRGNLRQAAIDRFSKPDSDRF-VFLLCTRAGGLGINLT 794
Query: 1218 SANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAA 1277
+A+ II D WNP DLQA R R GQ K V YRL+ + E +++ R K GL
Sbjct: 795 AADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDK 854
Query: 1278 RVVDRQQVHRT-ISKEEMLHLFEFGDDENPDPLTAVSKENGQGS 1320
V+ + + + L E D A+ +E +GS
Sbjct: 855 AVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGS 898
Score = 223 (83.6 bits), Expect = 6.4e-35, Sum P(2) = 6.4e-35
Identities = 80/303 (26%), Positives = 141/303 (46%)
Query: 755 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA-LIVTPVNVLHNWKQEFMKWRPSELKP 813
CILA MGLGKT Q I FLY + + G+R LI+ P++ + NW++EF W +++
Sbjct: 407 CILADEMGLGKTIQSITFLYEILLT---GIRGPFLIIAPLSTIANWEREFRTW--TDINV 461
Query: 814 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
+ V+ +SR + +R G + G A+R F + M C L
Sbjct: 462 V-VYHGSLISRQMIQQYEMYFRDSQGRIIRG--AYR---FQAIITTFEMILGGCGELNAI 515
Query: 874 P-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 932
++ DEAH +KN + LK + + ++ LTG+PLQN + E + ++ F+
Sbjct: 516 EWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFP 575
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 992
S F F + T E V Q+ + + + ++R+ +V KK L PK
Sbjct: 576 SESTFMQEFGDL--------KTEEQV----QKLQAILKPM--MLRRLKEDVEKK-LAPKE 620
Query: 993 VFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLT 1051
+I V+L+ +Q++ Y+ L+ + F + + + L + NHP +++
Sbjct: 621 ETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNV-PNLVNTMMELRKCCNHPYLIKGA 679
Query: 1052 KDK 1054
++K
Sbjct: 680 EEK 682
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 259 (96.2 bits), Expect = 6.4e-35, Sum P(3) = 6.4e-35
Identities = 101/373 (27%), Positives = 164/373 (43%)
Query: 701 YIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHT 760
++ ++ K E +IP I+A+L+ +Q G+ W + + K K L IL
Sbjct: 1243 FLEQLLDGKKLENYKIPVPINAELRKYQQDGVN--W---LAFLNKYK-----LHGILCDD 1292
Query: 761 MGLGKTFQVIAFL----------YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
MGLGKT Q I L Y + +L+V P + +W E K+ E
Sbjct: 1293 MGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSKE 1352
Query: 811 -LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRN-LSFGKHVKDRNMAREICH 868
L PL + R R L + + + Y RN + F +++K C
Sbjct: 1353 YLNPLH-YTGPPTERIR----LQHQVKRHNLIVASYDVVRNDIDFFRNIKFN-----YC- 1401
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ DE H+IKN + ++A+KQ+ RI L+G+P+QNN++E + + DF+
Sbjct: 1402 ---------ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMP 1452
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
GFLG+ +F R+ PI + S+S + + L+ Q+ F+ R V +DL
Sbjct: 1453 GFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDL 1512
Query: 989 PPKTVFVITVKLSPLQRRLYKRFL------DLHGFTNDRVSNEKIRKS-------FFAGY 1035
PPK + LSPLQ +LY+ F D+ + +E+ K F
Sbjct: 1513 PPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQAL 1572
Query: 1036 QALAQIWNHPGIL 1048
Q L ++ NHP ++
Sbjct: 1573 QYLRKLCNHPALV 1585
Score = 228 (85.3 bits), Expect = 6.4e-35, Sum P(3) = 6.4e-35
Identities = 61/187 (32%), Positives = 95/187 (50%)
Query: 1138 LVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197
L+F Q LD++E L K P + RLDG +R +V RFN +
Sbjct: 1648 LIFCQLKSMLDIVEHDLLKPHLPSVT---------YLRLDGSIPPGQRHSIVSRFNN--D 1696
Query: 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 1257
+ L++T G LG+NL A+ V+ V+ WNP DLQA+ RA R GQ + V YRL+
Sbjct: 1697 PSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLIT 1756
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFGDDENPDPLTAVSKEN 1316
GT+EEKI Q K +A V+ ++ +++ +++L LF D + A + +
Sbjct: 1757 RGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEK--ADTSTS 1814
Query: 1317 GQGSSQN 1323
G+ S ++
Sbjct: 1815 GKASMKS 1821
Score = 47 (21.6 bits), Expect = 6.4e-35, Sum P(3) = 6.4e-35
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 100 LEAAVEDEMTVYKEQWEAALDELETESAHLLEQL-DGAGIE 139
LEA + D + +E L +L+ + H LEQL DG +E
Sbjct: 1219 LEAGIPDPPNMSEE-----LIQLKAKERHFLEQLLDGKKLE 1254
Score = 37 (18.1 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 563 RNISEACLSDEVQASCWQCCCCSPSLLKRLTSEL 596
+N + C++ +Q + C + ++K L S L
Sbjct: 894 QNYAAQCIAKLLQQCTTRTPCPNSKIIKNLCSSL 927
Score = 37 (18.1 bits), Expect = 5.6e-12, Sum P(3) = 5.6e-12
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 185 FLQTERPVRRRHGK 198
FL TER R+GK
Sbjct: 1454 FLGTERQFAARYGK 1467
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 244 (91.0 bits), Expect = 6.5e-35, Sum P(3) = 6.5e-35
Identities = 68/182 (37%), Positives = 100/182 (54%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
S K+ L +L S ++ L+FSQ LD++E+ L+ L ++ RL
Sbjct: 764 SAKVKKLCSLLKK-SRPNERILIFSQFTQVLDILEYVLNTLDL------------EFLRL 810
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T RQ+L++ F+ N+ K L+ST++G GINL AN VI+ D S+NP D+Q
Sbjct: 811 DGSTPVETRQQLIDDFHT--NENYKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQ 868
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVV-DRQQVHRTISKEEML 1295
A RA R GQT+PV YRL+ T+EE I + TK L + + D +++ + IS E M
Sbjct: 869 AEDRAHRVGQTRPVHVYRLITKNTIEENIRRLANTKLTLESSLTTDSEKIQKEISGELMK 928
Query: 1296 HL 1297
L
Sbjct: 929 SL 930
Score = 155 (59.6 bits), Expect = 6.5e-35, Sum P(3) = 6.5e-35
Identities = 67/249 (26%), Positives = 108/249 (43%)
Query: 788 LIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTA 847
L+V P + L NW +EF K+ PS LRV E S + + ++ F + T
Sbjct: 466 LVVVPSSTLGNWLREFEKFCPS----LRV---ESYSGTQSERINKRYYLMDTDFDVLVTT 518
Query: 848 FRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIAL 907
++ L+ G DR+ R+ DI + DE H +KN ++ + L + R+ +
Sbjct: 519 YQ-LASGSR-DDRSFLRK------QRFDISIFDEGHYLKNRMSERYKHLMNIPANFRLLI 570
Query: 908 TGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE-DVK---IMNQ 963
TG+PLQNNL E ++ F+ F N Q ++ +TS+ D++ + +
Sbjct: 571 TGTPLQNNLKELISLLAFMLPKV------FDNNMQG-LDIIYKIKTTSDGDIERAYLSQE 623
Query: 964 RSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVS 1023
R + F+ R V DLPPK V + Q LY L+L N
Sbjct: 624 RISRAKTIMNPFILRRRKENVLSDLPPKIQHVEYCHMEETQLSLYLSVLELKNLVNANRE 683
Query: 1024 N--EKIRKS 1030
N ++RK+
Sbjct: 684 NILMQLRKA 692
Score = 124 (48.7 bits), Expect = 6.5e-35, Sum P(3) = 6.5e-35
Identities = 39/95 (41%), Positives = 56/95 (58%)
Query: 717 PSSISA--KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLY 774
PSSI++ LK++Q+VG+ W ++ K K L ILA MGLGKT QVI+FL
Sbjct: 405 PSSIASGITLKSYQIVGLN--WLCLMY---KAK-----LSGILADEMGLGKTCQVISFL- 453
Query: 775 TAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+++ + R L+V P + L NW +EF K+ PS
Sbjct: 454 ASLKEKGIQNRH-LVVVPSSTLGNWLREFEKFCPS 487
Score = 47 (21.6 bits), Expect = 6.2e-27, Sum P(3) = 6.2e-27
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 646 EETKRKIAIEK--ERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIV 703
E KRK +E+ ++ ++ K L+V +L + T + DL + DA I
Sbjct: 191 ENAKRKRYVEEGTKQGQKKKPLRV-----IELSDEETNEDDLLGQSPTACTTDA---NID 242
Query: 704 NVVREKGE--EAVRI----PSSISAKLKAHQVVGIRFMWENIIQSIRKVKSG 749
N + E + E V I PS + ++ + V + F+ E+ +Q I +V SG
Sbjct: 243 NSIPENSDKIEEVSIESSGPSEVEDEMSEYDVRVLNFLNESTLQEIVEV-SG 293
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 273 (101.2 bits), Expect = 7.1e-35, Sum P(4) = 7.1e-35
Identities = 78/236 (33%), Positives = 120/236 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1110 SGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1157
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1158 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1216
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ V YR + ++EE+I QV K + +V R + ++SK+
Sbjct: 1217 AFSRAHRIGQANKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKAGSMSKQ 1274
Query: 1293 EMLHLFEFGDDEN-PDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESL 1347
E+ + +FG +E D +KE N A+ L + + D ++++
Sbjct: 1275 ELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATDDTDVQNM 1330
Score = 215 (80.7 bits), Expect = 7.1e-35, Sum P(4) = 7.1e-35
Identities = 98/362 (27%), Positives = 157/362 (43%)
Query: 692 EVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDK 751
E+ GD N K E R ++ L +Q+ G+ W S +
Sbjct: 755 EIQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLN--WLRF--------SWAQ 804
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 805 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP--- 860
Query: 812 KPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREIC 867
K V D +D RA + ++ + G AF R HV +
Sbjct: 861 KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITI 918
Query: 868 HALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVD 924
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++
Sbjct: 919 DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLN 978
Query: 925 FVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVV 984
F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 979 FL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVF 1024
Query: 985 KKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWN 1043
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L + N
Sbjct: 1025 K-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCCN 1081
Query: 1044 HP 1045
HP
Sbjct: 1082 HP 1083
Score = 55 (24.4 bits), Expect = 7.1e-35, Sum P(4) = 7.1e-35
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 433 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 475
Score = 48 (22.0 bits), Expect = 7.9e-18, Sum P(4) = 7.9e-18
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 855 KHVKDRNMAREICHALQDGPDILVCD 880
K +D +M E C +DG ++L CD
Sbjct: 500 KEEEDDHM--EYCRVCKDGGELLCCD 523
Score = 46 (21.3 bits), Expect = 6.0e-34, Sum P(4) = 6.0e-34
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 590
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 509 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 557
Score = 43 (20.2 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 431 QDYCEVCQQGGEIILCD 447
Score = 41 (19.5 bits), Expect = 7.1e-35, Sum P(4) = 7.1e-35
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEEDD 320
D E+E+ +SEE+ ++ + EE++
Sbjct: 3 DEEEEEEEMVVSEEEEEEEEEGDEEEE 29
Score = 37 (18.1 bits), Expect = 1.8e-34, Sum P(4) = 1.8e-34
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 191 PVRRRHGKLLEEGASGFLQKKIANDGSENGGKEV 224
PVR K L+ G G +KK+ + G +EV
Sbjct: 393 PVR---AKKLKRGRPGRKKKKVLGCPTVTGEEEV 423
Score = 37 (18.1 bits), Expect = 1.0e-10, Sum P(4) = 1.0e-10
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1161 GKQGKLWKKGKDWYRLDG 1178
GK ++W + D++ L G
Sbjct: 1752 GKLNEIWHRRHDYWLLAG 1769
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 268 (99.4 bits), Expect = 7.1e-35, Sum P(4) = 7.1e-35
Identities = 71/192 (36%), Positives = 106/192 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 886 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 933
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 934 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 992
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ K V YR + ++EE+I QV K + +V R + +++K+
Sbjct: 993 AFSRAHRIGQNKKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKSGSMTKQ 1050
Query: 1293 EMLHLFEFGDDE 1304
E+ + +FG +E
Sbjct: 1051 ELDDILKFGTEE 1062
Score = 204 (76.9 bits), Expect = 7.1e-35, Sum P(4) = 7.1e-35
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 580 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 638
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
E S R E + A + G + + F + + I A
Sbjct: 639 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 697
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 698 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 756
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 987
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 757 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 802
Query: 988 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 803 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 859
Score = 63 (27.2 bits), Expect = 7.1e-35, Sum P(4) = 7.1e-35
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 523 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 578
KK + D D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 191 KKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 247
Query: 579 WQC 581
C
Sbjct: 248 PHC 250
Score = 47 (21.6 bits), Expect = 7.1e-35, Sum P(4) = 7.1e-35
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 175 MRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNK 234
+R+ I G++D + + R+ G G G K+ SE +E SD++ S++
Sbjct: 115 VRKKIKGSKDAKKKGKG-RKVAGLKFRFG--GISNKRKKGSSSEEDEREESDLDSASIHS 171
Query: 235 IFSGDVSEKCAAFGSK 250
S SE A G K
Sbjct: 172 --SSVRSEGSTALGKK 185
Score = 46 (21.3 bits), Expect = 9.7e-19, Sum P(4) = 9.7e-19
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 865 EICHALQDGPDILVCD 880
E C +DG ++L CD
Sbjct: 280 EFCRVCKDGGELLCCD 295
Score = 43 (20.2 bits), Expect = 7.7e-17, Sum P(3) = 7.7e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 206 QDYCEVCQQGGEIILCD 222
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 266 (98.7 bits), Expect = 7.4e-35, Sum P(2) = 7.4e-35
Identities = 80/235 (34%), Positives = 117/235 (49%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ L +LT + G + L++SQ +DL+E Y+ +++K + RL
Sbjct: 1108 SGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYM-----------VYRK-HTYMRL 1155
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG ++ SER+ +V F + L+STRAG LGINL +A+ VI D WNPT D Q
Sbjct: 1156 DGSSKISERRDMVADFQN--RNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1213
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR-TISKEEML 1295
A+ RA R GQTK V YRL+ GT+EE+I +R K + V+ T+ +E++
Sbjct: 1214 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1273
Query: 1296 HLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGK 1350
L D+E L +E Q + TN + K K + L GK
Sbjct: 1274 SLL-LDDEELEKKLRQRQEEKRQ--QEETNRVKERKRKREKYAEKKKKEDELDGK 1325
Score = 212 (79.7 bits), Expect = 7.4e-35, Sum P(2) = 7.4e-35
Identities = 70/261 (26%), Positives = 124/261 (47%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
++G+ ILA MGLGKT Q IA L N+ LI++P + L+NW QEF ++ P
Sbjct: 539 EQGINGILADEMGLGKTVQSIALLAHLAERENIW-GPFLIISPASTLNNWHQEFARFVPK 597
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA-REICH 868
+V DR+ + W K L YT ++ F + + +++ +
Sbjct: 598 ----FKVLPYWGNPHDRKV-IRKFWSQKT---L--YT--QDAPFHVVITSYQLVVQDVKY 645
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ +V DEA +K++ + + L Q +C+ R+ LTG+P+QN + E + ++ F+
Sbjct: 646 FQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 705
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
S EF F IE+ S ++ ++ R H++ LK F+ R V+ +L
Sbjct: 706 TLFDSHEEFNEWFSKDIESHAENKSAIDENQL--SRLHMI---LKPFMLRRIKKDVENEL 760
Query: 989 PPKTVFVITVKLSPLQRRLYK 1009
K ++ + + Q+ LY+
Sbjct: 761 SDKIEILMYCQQTSRQKLLYQ 781
Score = 128 (50.1 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 43/156 (27%), Positives = 73/156 (46%)
Query: 658 RQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGY-----IVNVVREKGEE 712
+ + LK+ + + S D S A++ + TG+ + N GE+
Sbjct: 453 KAQALKNAEDAYQIHQARTRSFDEDAKESRAAALRAANKSGTGFGESYSLANPSIRAGED 512
Query: 713 AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF 772
+ P+ + KLK +Q+ G+ ++ N+ + +G+ ILA MGLGKT Q IA
Sbjct: 513 IPQ-PTIFNGKLKGYQLKGMNWL-ANLYE---------QGINGILADEMGLGKTVQSIAL 561
Query: 773 LYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
L N+ LI++P + L+NW QEF ++ P
Sbjct: 562 LAHLAERENIW-GPFLIISPASTLNNWHQEFARFVP 596
Score = 51 (23.0 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 962 NQRSHILYEQLKGFVQRMDMNVVKKDLP 989
+++ H+ EQL +++ +++VKK+LP
Sbjct: 268 SKKKHMSIEQLNARRRKVWLSIVKKELP 295
Score = 42 (19.8 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1108 EHTYKELDYSGKMVLLLDILTMCSNMGD 1135
+HTY LD S K+ D++ N D
Sbjct: 1149 KHTYMRLDGSSKISERRDMVADFQNRND 1176
Score = 41 (19.5 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 644 LGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSV 679
L + K KI+I+ Q + + Q ++ S LMN V
Sbjct: 779 LYQALKNKISIDDLLQSSMGTTQQAQTTTSSLMNLV 814
Score = 41 (19.5 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 503 VHPHPIL-NVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVS 548
+H +L N++ CK + HV S CV C + ++L S
Sbjct: 970 LHSCTLLQNLVFSSHCKAVTGYSDHVIHRRRSATSCVRCCQVTELPS 1016
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 251 (93.4 bits), Expect = 7.5e-35, Sum P(3) = 7.5e-35
Identities = 112/407 (27%), Positives = 172/407 (42%)
Query: 753 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA-LIVTPVNVLHNWKQEFMKWRPSEL 811
L CILA MGLGKT QVIAFL G++ L+V P + + NW +EF K+ P+ L
Sbjct: 583 LSCILADDMGLGKTCQVIAFLAHLYEK---GIKGPHLVVVPSSTIENWLREFQKFCPT-L 638
Query: 812 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 871
+ + ++V R ++ R V + YT + H RNM + C
Sbjct: 639 SVMPYYADQNVRAQIREQIEGN-RDDINVVITTYTIAKG-KVDAHFL-RNM--DFCAC-- 691
Query: 872 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFL 931
V DE HM+K++ + + L +++ + R+ LTG+PLQNNL E ++ F+
Sbjct: 692 ------VYDEGHMLKSSTSVLYEKLIRIRARFRLLLTGTPLQNNLQELASLLGFILPKVF 745
Query: 932 GSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPK 991
E ++ Q N T S + QR LK FV R + V DLP K
Sbjct: 746 ---QERKDDLQYIFSNKAKTVDESHSALLSAQRIERAKSMLKPFVLRRKKHQVI-DLPAK 801
Query: 992 TVFVITVKLSPLQRRLYKRFL-DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL 1050
V +++ QR +Y+ ++ DR + +K L Q HP L
Sbjct: 802 ISRVEYCEMNAAQREIYEHEKNEVKKLLEDRAAGKKTGNKSANILMKLRQAAIHP----L 857
Query: 1051 TKDKGYPSRXXXXXXXXXXNMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDL-LHEH 1109
+ Y + + P+ + + LQ ND Q N L +
Sbjct: 858 LHRRHYNDKILTKMSKAC--LQEEKWAESDPKLIYEDLQPYNDFECHQLCVENPKSLGKF 915
Query: 1110 TYKELDY--SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 1154
K ++ SGK+ L ++L GD+ LVFSQ +D++E L
Sbjct: 916 ALKNNEWMDSGKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVL 962
Score = 236 (88.1 bits), Expect = 7.5e-35, Sum P(3) = 7.5e-35
Identities = 66/176 (37%), Positives = 91/176 (51%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ L ++L GD+ LVFSQ +D++E L + + RL
Sbjct: 925 SGKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLEN------------QHLKFVRL 972
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T +RQ +++ F+E N + L+ST+AG GINL AN+VII D S+NP D+Q
Sbjct: 973 DGTTSVEDRQSIMDTFHE--NTDIPVFLLSTKAGGAGINLACANKVIIFDSSFNPQEDVQ 1030
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKE 1292
A RA R GQT+ V RL+ T+EE+IY TK L V S+E
Sbjct: 1031 AENRAHRVGQTREVEVIRLVTKDTIEEQIYALGQTKLALDQAVAGEDGADSKKSEE 1086
Score = 125 (49.1 bits), Expect = 9.5e-22, Sum P(3) = 9.5e-22
Identities = 34/88 (38%), Positives = 49/88 (55%)
Query: 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL 782
K+K +Q+VGI W +++ + L CILA MGLGKT QVIAFL
Sbjct: 563 KMKNYQIVGIN--WLSLLF--------ENELSCILADDMGLGKTCQVIAFLAHLYEK--- 609
Query: 783 GLRTA-LIVTPVNVLHNWKQEFMKWRPS 809
G++ L+V P + + NW +EF K+ P+
Sbjct: 610 GIKGPHLVVVPSSTIENWLREFQKFCPT 637
Score = 61 (26.5 bits), Expect = 3.4e-15, Sum P(3) = 3.4e-15
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 654 IEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEA 713
+ K QER LQ FS+K+K T+D SA S + + A + V+R K +
Sbjct: 741 LPKVFQERKDDLQYIFSNKAK-----TVDESHSALLSAQRIERAKSMLKPFVLRRKKHQV 795
Query: 714 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLG 754
+ +P+ IS R ++E+ ++K+ D+ G
Sbjct: 796 IDLPAKISRVEYCEMNAAQREIYEHEKNEVKKLLE-DRAAG 835
Score = 38 (18.4 bits), Expect = 7.5e-35, Sum P(3) = 7.5e-35
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 370 SNKKTDDGDMPGNNNEVALQNLETGVLESSVKERS 404
S +D D PG+ + A + G++ +K ++
Sbjct: 532 SQPSDEDSDGPGSRSRKARFISQPGIMAEDLKMKN 566
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 273 (101.2 bits), Expect = 7.7e-35, Sum P(4) = 7.7e-35
Identities = 78/236 (33%), Positives = 120/236 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1110 SGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1157
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1158 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1216
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ V YR + ++EE+I QV K + +V R + ++SK+
Sbjct: 1217 AFSRAHRIGQANKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKAGSMSKQ 1274
Query: 1293 EMLHLFEFGDDEN-PDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESL 1347
E+ + +FG +E D +KE N A+ L + + D ++++
Sbjct: 1275 ELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATDDTDVQNM 1330
Score = 215 (80.7 bits), Expect = 7.7e-35, Sum P(4) = 7.7e-35
Identities = 98/362 (27%), Positives = 157/362 (43%)
Query: 692 EVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDK 751
E+ GD N K E R ++ L +Q+ G+ W S +
Sbjct: 755 EIQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLN--WLRF--------SWAQ 804
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 805 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP--- 860
Query: 812 KPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREIC 867
K V D +D RA + ++ + G AF R HV +
Sbjct: 861 KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITI 918
Query: 868 HALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVD 924
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++
Sbjct: 919 DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLN 978
Query: 925 FVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVV 984
F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 979 FL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVF 1024
Query: 985 KKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWN 1043
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L + N
Sbjct: 1025 K-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCCN 1081
Query: 1044 HP 1045
HP
Sbjct: 1082 HP 1083
Score = 55 (24.4 bits), Expect = 7.7e-35, Sum P(4) = 7.7e-35
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 433 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 475
Score = 48 (22.0 bits), Expect = 8.5e-18, Sum P(4) = 8.5e-18
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 855 KHVKDRNMAREICHALQDGPDILVCD 880
K +D +M E C +DG ++L CD
Sbjct: 500 KEEEDDHM--EYCRVCKDGGELLCCD 523
Score = 46 (21.3 bits), Expect = 6.5e-34, Sum P(4) = 6.5e-34
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 590
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 509 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 557
Score = 43 (20.2 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 431 QDYCEVCQQGGEIILCD 447
Score = 41 (19.5 bits), Expect = 7.7e-35, Sum P(4) = 7.7e-35
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEEDD 320
D E+E+ +SEE+ ++ + EE++
Sbjct: 3 DEEEEEEEMVVSEEEEEEEEEGDEEEE 29
Score = 37 (18.1 bits), Expect = 2.0e-34, Sum P(4) = 2.0e-34
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 191 PVRRRHGKLLEEGASGFLQKKIANDGSENGGKEV 224
PVR K L+ G G +KK+ + G +EV
Sbjct: 393 PVR---AKKLKRGRPGRKKKKVLGCPTVTGEEEV 423
Score = 37 (18.1 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1161 GKQGKLWKKGKDWYRLDG 1178
GK ++W + D++ L G
Sbjct: 1786 GKLNEIWHRRHDYWLLAG 1803
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 273 (101.2 bits), Expect = 7.8e-35, Sum P(4) = 7.8e-35
Identities = 78/236 (33%), Positives = 120/236 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1118 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1165
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1166 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1224
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ V YR + ++EE+I QV K + +V R + ++SK+
Sbjct: 1225 AFSRAHRIGQANKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKAGSMSKQ 1282
Query: 1293 EMLHLFEFGDDEN-PDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESL 1347
E+ + +FG +E D +KE N A+ L + + D ++++
Sbjct: 1283 ELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNM 1338
Score = 213 (80.0 bits), Expect = 7.8e-35, Sum P(4) = 7.8e-35
Identities = 86/303 (28%), Positives = 139/303 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 812 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP-- 868
Query: 811 LKPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREI 866
K V D +D RA + ++ + G AF R HV +
Sbjct: 869 -KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELIT 925
Query: 867 CHALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 923
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + ++
Sbjct: 926 IDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLL 985
Query: 924 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 983
+F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 986 NFL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADV 1031
Query: 984 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIW 1042
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L +
Sbjct: 1032 FK-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCC 1088
Query: 1043 NHP 1045
NHP
Sbjct: 1089 NHP 1091
Score = 55 (24.4 bits), Expect = 7.8e-35, Sum P(4) = 7.8e-35
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 440 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 482
Score = 48 (22.0 bits), Expect = 5.4e-18, Sum P(4) = 5.4e-18
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 855 KHVKDRNMAREICHALQDGPDILVCD 880
K +D +M E C +DG ++L CD
Sbjct: 508 KEEEDDHM--EYCRVCKDGGELLCCD 531
Score = 46 (21.3 bits), Expect = 6.6e-34, Sum P(4) = 6.6e-34
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 590
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 517 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 565
Score = 43 (20.2 bits), Expect = 7.8e-35, Sum P(4) = 7.8e-35
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 294 DAIANEKELALSEEQRKKFRKVKEEDDANMD 324
D E+E+ +SEE+ ++ + EE++ ++
Sbjct: 7 DEEEEEEEMVVSEEEEEEEEEGDEEEEEEVE 37
Score = 43 (20.2 bits), Expect = 9.3e-17, Sum P(3) = 9.3e-17
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 438 QDYCEVCQQGGEIILCD 454
Score = 37 (18.1 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1161 GKQGKLWKKGKDWYRLDG 1178
GK ++W + D++ L G
Sbjct: 1793 GKLNEIWHRRHDYWLLAG 1810
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 273 (101.2 bits), Expect = 8.0e-35, Sum P(3) = 8.0e-35
Identities = 79/213 (37%), Positives = 116/213 (54%)
Query: 1117 SGKMVLLLDILTMCS-NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYR 1175
SGKM LLLD L C N G K L+FSQ LD+++ + + L + W + R
Sbjct: 625 SGKM-LLLDRLIPCLLNKGHKILIFSQFKTQLDILQDWATHL-------RSW----NCCR 672
Query: 1176 LDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1235
+DG ++RQ ++ FN +K K L+STRAG GINL +A+ VI+ D WNP DL
Sbjct: 673 IDGAISQADRQAQIKAFNT--DKDYKIFLLSTRAGGQGINLVAADTVILFDSDWNPQQDL 730
Query: 1236 QAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV-----HRTIS 1290
QA RA R GQTKPV YRL GT+E+ + ++ +K L V+ + + T+S
Sbjct: 731 QAQDRAHRIGQTKPVIVYRLATKGTVEQTLLEKADSKRRLERLVIQKGKFKSLLSESTMS 790
Query: 1291 KEEMLHLFE-FGDDE------NPDPLTAVSKEN 1316
++++ L G+DE + DP + +S E+
Sbjct: 791 RDDVDELKRALGEDEFERFEASADPASILSDED 823
Score = 208 (78.3 bits), Expect = 8.0e-35, Sum P(3) = 8.0e-35
Identities = 72/268 (26%), Positives = 119/268 (44%)
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
GL ILA MGLGKT Q I+ L + N+ LI P++ + NW EF +W P +
Sbjct: 220 GLCGILADEMGLGKTVQAIS-LIAFFKEHNVS-GPFLISAPLSTVSNWVDEFARWTPG-I 276
Query: 812 KPLRVFMLEDVSRDRRAELLAKWR----AKGGVFLIGYTAFRNLSFGKHVKDRNMAREIC 867
K + L +RD RA+L K+ K F + T++ + DR +
Sbjct: 277 KTV----LYHGTRDERAQLRKKFMNLRDQKSPDFPVVCTSYEIC-----MNDRKFLAQYQ 327
Query: 868 HALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
++ DE H +KN + L R+ +TG+PLQNN+ E + ++ F+
Sbjct: 328 WRY------IIVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPLQNNITELWSLLHFLL 381
Query: 928 EGFLGSSHEFRN--RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVK 985
+ F+N F + ++N T+ + + H + LK F+ R V+
Sbjct: 382 PEIFNDLNSFQNWFDFSSVLDNNGQTDMIERRKRTLVSTMHSI---LKPFLLRRVKTDVE 438
Query: 986 KDLPPKTVFVITVKLSPLQRRLYKRFLD 1013
LP K +++ L+ Q+ LY+ L+
Sbjct: 439 SALPKKREYILYAPLTLEQKDLYREILN 466
Score = 48 (22.0 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 24/102 (23%), Positives = 46/102 (45%)
Query: 1253 YRLMAHGT----MEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDP 1308
YR + +GT +EEK +R + K G+ +R + + R+ S + P+
Sbjct: 461 YREILNGTGRQYLEEKATERLMAKNGMISRP---RSLKRSASSSVV---------STPNK 508
Query: 1309 LTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGK 1350
S+++ GS ++ + K P +++ SD+ S L K
Sbjct: 509 SVRSSRDSTPGSRASST--RRRKAPQTYKDISDREFNSKLRK 548
Score = 38 (18.4 bits), Expect = 8.0e-35, Sum P(3) = 8.0e-35
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 105 EDEMTVYKEQWEAALDELETESAHLLEQ 132
E + T +E E A DE E + L EQ
Sbjct: 159 EAKNTTVQEALEHAADEFEAKPTVLGEQ 186
Score = 37 (18.1 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 174 EMRESIAGAEDFLQTERPVRRRHGKL 199
E + ++ G ++ + T++P GK+
Sbjct: 177 EAKPTVLGEQELVATQQPAPVTGGKM 202
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 245 (91.3 bits), Expect = 8.8e-35, Sum P(2) = 8.8e-35
Identities = 71/216 (32%), Positives = 109/216 (50%)
Query: 1107 HE-HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGK 1165
H+ H + +GK+VL+ +L G K L+FSQ + LD++E YL + +
Sbjct: 347 HDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQ------RRY 400
Query: 1166 LWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIV 1225
L++ R+DGR + RQ ++RF++P + R L+ TRAG LGINL +A+ II
Sbjct: 401 LYE------RIDGRVRGNLRQAAIDRFSKPDSDRF-VFLLCTRAGGLGINLTAADTCIIF 453
Query: 1226 DGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV 1285
D WNP DLQA R R GQ+K V YRL+ + E +++ + K GL V+
Sbjct: 454 DSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSG 513
Query: 1286 HR-TISKEEMLHLFEFGDDENPDPLTAVSKENGQGS 1320
I+ + E D A+ +E+ +GS
Sbjct: 514 RDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGS 549
Score = 226 (84.6 bits), Expect = 8.8e-35, Sum P(2) = 8.8e-35
Identities = 80/303 (26%), Positives = 139/303 (45%)
Query: 755 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA-LIVTPVNVLHNWKQEFMKWRPSELKP 813
CILA MGLGKT Q IAFL N+G+ L++ P++ + NW++EF W +E+
Sbjct: 58 CILADEMGLGKTIQSIAFLQEVY---NVGIHGPFLVIAPLSTITNWEREFNTW--TEMNT 112
Query: 814 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873
+ V+ SR + + G + G A++ F + M C L++
Sbjct: 113 I-VYHGSLASRQMIQQYEMYCKDSRGRLIPG--AYK---FDALITTFEMILSDCPELREI 166
Query: 874 P-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 932
++ DEAH +KN +LK + + ++ LTG+PLQN + E + ++ F+
Sbjct: 167 EWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFP 226
Query: 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT 992
S EF F + T E V Q+ + LK + R V+K+L PK
Sbjct: 227 SESEFLKDFGDL--------KTEEQV----QKLQAI---LKPMMLRRLKEDVEKNLAPKQ 271
Query: 993 VFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLT 1051
+I V+L+ +Q++ Y+ L+ + F + + + + L + NHP ++
Sbjct: 272 ETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNM-PNLLNTMMELRKCCNHPYLINGA 330
Query: 1052 KDK 1054
++K
Sbjct: 331 EEK 333
>UNIPROTKB|O14981 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0003700 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AJ001017 EMBL:AF038362 EMBL:AF166118 IPI:IPI00024802
RefSeq:NP_003963.1 UniGene:Hs.500526 ProteinModelPortal:O14981
SMR:O14981 IntAct:O14981 MINT:MINT-2795412 STRING:O14981
PhosphoSite:O14981 PaxDb:O14981 PeptideAtlas:O14981 PRIDE:O14981
Ensembl:ENST00000265990 GeneID:9044 KEGG:hsa:9044 UCSC:uc001khr.3
CTD:9044 GeneCards:GC10P093673 HGNC:HGNC:17307 HPA:HPA042274
MIM:605191 neXtProt:NX_O14981 PharmGKB:PA25437 HOGENOM:HOG000210415
HOVERGEN:HBG017883 InParanoid:O14981 KO:K15192 OMA:TKQEGAI
OrthoDB:EOG4W0XC6 PhylomeDB:O14981 GenomeRNAi:9044 NextBio:33875
ArrayExpress:O14981 Bgee:O14981 CleanEx:HS_BTAF1
Genevestigator:O14981 GermOnline:ENSG00000095564 InterPro:IPR022707
Pfam:PF12054 Uniprot:O14981
Length = 1849
Score = 258 (95.9 bits), Expect = 9.9e-35, Sum P(3) = 9.9e-35
Identities = 101/373 (27%), Positives = 164/373 (43%)
Query: 701 YIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHT 760
++ ++ K E +IP I+A+L+ +Q G+ W + + K K L IL
Sbjct: 1243 FLEQLLDGKKLENYKIPVPINAELRKYQQDGVN--W---LAFLNKYK-----LHGILCDD 1292
Query: 761 MGLGKTFQVIAFL----------YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
MGLGKT Q I L Y + +L+V P + +W E K+ E
Sbjct: 1293 MGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSRE 1352
Query: 811 -LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRN-LSFGKHVKDRNMAREICH 868
L PL + R R L + + + Y RN + F +++K C
Sbjct: 1353 YLNPLH-YTGPPTERIR----LQHQVKRHNLIVASYDVVRNDIDFFRNIKFN-----YC- 1401
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ DE H+IKN + ++A+KQ+ RI L+G+P+QNN++E + + DF+
Sbjct: 1402 ---------ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMP 1452
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
GFLG+ +F R+ PI + S+S + + L+ Q+ F+ R V +DL
Sbjct: 1453 GFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDL 1512
Query: 989 PPKTVFVITVKLSPLQRRLYKRFL------DLHGFTNDRVSNEKIRKS-------FFAGY 1035
PPK + LSPLQ +LY+ F D+ + +E+ K F
Sbjct: 1513 PPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQAL 1572
Query: 1036 QALAQIWNHPGIL 1048
Q L ++ NHP ++
Sbjct: 1573 QYLRKLCNHPALV 1585
Score = 228 (85.3 bits), Expect = 9.9e-35, Sum P(3) = 9.9e-35
Identities = 61/187 (32%), Positives = 95/187 (50%)
Query: 1138 LVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197
L+F Q LD++E L K P + RLDG +R +V RFN +
Sbjct: 1648 LIFCQLKSMLDIVEHDLLKPHLPSVT---------YLRLDGSIPPGQRHSIVSRFNN--D 1696
Query: 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 1257
+ L++T G LG+NL A+ V+ V+ WNP DLQA+ RA R GQ + V YRL+
Sbjct: 1697 PSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLIT 1756
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFGDDENPDPLTAVSKEN 1316
GT+EEKI Q K +A V+ ++ +++ +++L LF D + A + +
Sbjct: 1757 RGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEK--ADTSTS 1814
Query: 1317 GQGSSQN 1323
G+ S ++
Sbjct: 1815 GKASMKS 1821
Score = 46 (21.3 bits), Expect = 9.9e-35, Sum P(3) = 9.9e-35
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 100 LEAAVEDEMTVYKEQWEAALDELETESAHLLEQL-DGAGIE 139
LEA + D + A L +L+ + H LEQL DG +E
Sbjct: 1219 LEAGIPDPPNM-----SAELIQLKAKERHFLEQLLDGKKLE 1254
Score = 37 (18.1 bits), Expect = 8.5e-34, Sum P(3) = 8.5e-34
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 563 RNISEACLSDEVQASCWQCCCCSPSLLKRLTSEL 596
+N + C++ +Q + C + ++K L S L
Sbjct: 894 QNYAAQCIAKLLQQCTTRTPCPNSKIIKNLCSSL 927
Score = 37 (18.1 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 185 FLQTERPVRRRHGK 198
FL TER R+GK
Sbjct: 1454 FLGTERQFAARYGK 1467
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 242 (90.2 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 65/166 (39%), Positives = 88/166 (53%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK ++L +L G K L+FSQ LD++ Y + ++ RL
Sbjct: 599 SGKFLILDRMLPELKARGHKVLLFSQMTRMLDILMDYCHF------------RNFNFSRL 646
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG SER+K + FN + V L+STRAG LGINL +A+ VII D WNP DLQ
Sbjct: 647 DGSMSYSEREKNMHSFNT--DPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQ 704
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282
A R R GQTKPV YRL+ T+++KI +R K L ++ +
Sbjct: 705 AQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHK 750
Score = 228 (85.3 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 77/264 (29%), Positives = 123/264 (46%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT-PVNVLHNWKQEFMKWRP 808
+ G+ ILA MGLGKT Q IA T + G+ +V P++ L NW EF ++ P
Sbjct: 240 ENGINGILADEMGLGKTVQCIA---TIALMIQRGVPGPFLVCGPLSTLPNWMAEFQRFTP 296
Query: 809 SELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICH 868
+ + ++RR +L+ + G I SF ++DRN A + C+
Sbjct: 297 D----IPTMLYHGTQQERR-KLVKNIHKRKGTLQIHPVVIT--SFEIAMRDRN-ALQHCY 348
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
L+ DE H IKN + + LK+ ++ LTG+PLQNNL E + +++F+
Sbjct: 349 W-----KYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLP 403
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRS----HILYEQLKGFVQRMDMNVV 984
F + F I + + T+ED+ I +R H+L++ L F+ R + V
Sbjct: 404 DVFDDLKSFESWFD--ITS---LSETAEDI-IAKEREQNVLHMLHQILTPFLLRRLKSDV 457
Query: 985 KKDLPPKTVFVITVKLSPLQRRLY 1008
++PPK V+ LS Q Y
Sbjct: 458 ALEVPPKREVVVYAPLSKKQEIFY 481
Score = 197 (74.4 bits), Expect = 5.9e-30, Sum P(2) = 5.9e-30
Identities = 52/117 (44%), Positives = 64/117 (54%)
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG SER+K + FN + V L+STRAG LGINL +A+ VII D WNP D
Sbjct: 645 RLDGSMSYSEREKNMHSFNT--DPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSD 702
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISK 1291
LQA R R GQTKPV YRL+ T+++KI +R K R + K
Sbjct: 703 LQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAK--------------RKLEK 745
Score = 37 (18.1 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 351 TIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGV-LESSVKERSL 405
T+E S RP A KS++ K DD P N E + ++ V E +V E ++
Sbjct: 500 TVELSPTG-RPRRRARKSINYSKIDD--FP-NELEKLISQMQPEVDRERAVVETNI 551
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 258 (95.9 bits), Expect = 1.0e-34, Sum P(5) = 1.0e-34
Identities = 66/188 (35%), Positives = 99/188 (52%)
Query: 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 1177
GK+ L +L G + L+F+Q LD++E +L+ G L+ RLD
Sbjct: 2043 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY------HGHLY------LRLD 2090
Query: 1178 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQA 1237
G T +RQ L+ERFN +KR+ C ++STR+G +G+NL A+ V+ D WNPT D QA
Sbjct: 2091 GSTRVEQRQALMERFNA--DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQA 2148
Query: 1238 IYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLH- 1296
R R GQT+ V YRL++ T+EE I K+ K L ++ K++ +
Sbjct: 2149 QDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRE 2208
Query: 1297 LFEFGDDE 1304
LF+ +E
Sbjct: 2209 LFDMPLEE 2216
Score = 189 (71.6 bits), Expect = 1.0e-34, Sum P(5) = 1.0e-34
Identities = 54/171 (31%), Positives = 85/171 (49%)
Query: 877 LVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHE 936
L+ DEA IKN ++ Q+L QRR+ LTG+PLQN+LME + ++ F+ S E
Sbjct: 750 LILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHRE 809
Query: 937 FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI 996
F+ F NP+ G S + ++ + L++ L+ F+ R V+K +P K VI
Sbjct: 810 FKEWFSNPL-TGMIEGSQEYNEGLVKR----LHKVLRPFLLRRVKVDVEKQMPKKYEHVI 864
Query: 997 TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGI 1047
+LS QR LY F+ T + ++ S L ++ NHP +
Sbjct: 865 RCRLSKRQRCLYDDFM-AQTTTKETLATGHFM-SVINILMQLRKVCNHPNL 913
Score = 117 (46.2 bits), Expect = 1.0e-34, Sum P(5) = 1.0e-34
Identities = 38/135 (28%), Positives = 64/135 (47%)
Query: 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL-Y 774
IP + +L+ +Q +G+ ++ V +K L ILA MGLGKT Q I+ L +
Sbjct: 617 IPLLLRGQLREYQHIGLDWL----------VTMYEKKLNGILADEMGLGKTIQTISLLAH 666
Query: 775 TAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW 834
A N G LI+ P +V+ NW+ E +W PS ++ ++R+ + W
Sbjct: 667 LACEKGNWGPH--LIIVPTSVMLNWEMELKRWCPS----FKILTYYGAQKERKLKRQG-W 719
Query: 835 RAKGGVFLIGYTAFR 849
K F + T+++
Sbjct: 720 -TKPNAFHVCITSYK 733
Score = 40 (19.1 bits), Expect = 1.0e-34, Sum P(5) = 1.0e-34
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 306 EEQRKKFRKVKEEDDANM 323
EEQR+K + + E+ A +
Sbjct: 174 EEQRQKEERARREEQAKL 191
Score = 37 (18.1 bits), Expect = 1.0e-34, Sum P(5) = 1.0e-34
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 449 SDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQS 486
S ++D +++ + ++HS E + ++ S +S
Sbjct: 500 SSQSDSAEEQSEDEEDEHSEEEETSRSSESEESESEES 537
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 268 (99.4 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 71/192 (36%), Positives = 106/192 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 406 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 453
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 454 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 512
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ K V YR + ++EE+I QV K + +V R + +++K+
Sbjct: 513 AFSRAHRIGQNKKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKSGSMTKQ 570
Query: 1293 EMLHLFEFGDDE 1304
E+ + +FG +E
Sbjct: 571 ELDDILKFGTEE 582
Score = 204 (76.9 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 100 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 158
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
E S R E + A + G + + F + + I A
Sbjct: 159 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 217
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 218 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 276
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 987
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 277 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 322
Query: 988 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 323 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 379
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 223 (83.6 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 71/199 (35%), Positives = 99/199 (49%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 331 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 378
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 379 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 437
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKI-----YKRQVTKEGLAARVVDRQQV-H-RTI 1289
A RA R GQ V RL ++EEKI YK V ++ + A + D++ H R
Sbjct: 438 AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRA 497
Query: 1290 SKEEMLHLFEFGDDENPDP 1308
+ +L E ++E+ P
Sbjct: 498 FLQAILEHEEQDEEEDEVP 516
Score = 177 (67.4 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 877 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 130 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 189
Query: 936 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 190 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 246
Query: 995 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 1049
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 247 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 305
Score = 120 (47.3 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 32/93 (34%), Positives = 46/93 (49%)
Query: 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779
++ LK +Q+ G+ ++ V + L ILA MGLGKT Q IA + M
Sbjct: 2 VNGVLKQYQIKGLEWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEH 51
Query: 780 VNLGLRTALIVTPVNVLHNWKQEFMKWRPSELK 812
+ LI+ P++ L NW EF KW PS +K
Sbjct: 52 KRIN-GPFLIIVPLSTLSNWAYEFDKWAPSVVK 83
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 249 (92.7 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 64/176 (36%), Positives = 97/176 (55%)
Query: 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 1177
GK LL +L K L+FSQ LD++++Y S+ KG + R+D
Sbjct: 524 GKFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYFSE------------KGFEVCRID 571
Query: 1178 GRTESSERQKLVERFNEPLNKRVKCT--LISTRAGSLGINLHSANRVIIVDGSWNPTYDL 1235
G + ER++ ++ F++ ++ C+ L+STRAG LGINL +A+ I+ D WNP DL
Sbjct: 572 GSVKLDERRRQIKDFSD---EKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDL 628
Query: 1236 QAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISK 1291
QA+ R R GQTKPV YRL ++E ++ KR +K L V+ + Q H+ +K
Sbjct: 629 QAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVIGQGQFHQERAK 684
Score = 221 (82.9 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 86/313 (27%), Positives = 140/313 (44%)
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
GL ILA MGLGKT Q I FL + ++ L L++ P++ L NW E ++ PS
Sbjct: 220 GLNGILADQMGLGKTIQTIGFL-SHLKGNGLD-GPYLVIAPLSTLSNWFNEIARFTPS-- 275
Query: 812 KPLRVFMLEDVSRDRRAELLAKWRAK--GGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
+ + +++R EL K K G F I T++ N A+ I
Sbjct: 276 --INAIIYHG-DKNQRDELRRKHMPKTVGPKFPIVITSYEVAM--------NDAKRI--- 321
Query: 870 LQDGP-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
L+ P +V DE H +KN + + LK +K ++ LTG+PLQNNL E + +++F+
Sbjct: 322 LRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILP 381
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
S EF + F E ++ + E+ K Q L+ L+ F+ R V+ L
Sbjct: 382 DIFTSHDEFESWFDFS-EKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMKCDVELSL 440
Query: 989 PPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGY--QALAQI---WN 1043
P K ++ ++ Q++ + ++ + IR + G + Q+ N
Sbjct: 441 PRKKEIIMYATMTDHQKKFQEHLVN--NTLEAHLGENAIRGQGWKGKLNNLVIQLRKNCN 498
Query: 1044 HPGILQLTKDKGY 1056
HP +LQ D Y
Sbjct: 499 HPDLLQGQIDGSY 511
Score = 106 (42.4 bits), Expect = 9.3e-23, Sum P(3) = 9.3e-23
Identities = 31/96 (32%), Positives = 49/96 (51%)
Query: 717 PSSISAKLKAHQVVGIRFM---WENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 773
P +LK++Q+ G++++ W+N GL ILA MGLGKT Q I FL
Sbjct: 195 PLLTGGQLKSYQLKGVKWLISLWQN-------------GLNGILADQMGLGKTIQTIGFL 241
Query: 774 YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
+ ++ L L++ P++ L NW E ++ PS
Sbjct: 242 -SHLKGNGLD-GPYLVIAPLSTLSNWFNEIARFTPS 275
Score = 46 (21.3 bits), Expect = 1.2e-34, Sum P(3) = 1.2e-34
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 286 NSDDPFVADAIANEKE--LALSEEQRK 310
N D +++A+A E+E L L E++ K
Sbjct: 57 NGDSSLISEAMAQEEEQLLKLREDEEK 83
Score = 44 (20.5 bits), Expect = 1.9e-34, Sum P(3) = 1.9e-34
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 356 AVETRPLVDASKSLSNKKTD---DGDMPGN--NNEVALQNLETGVLESSV 400
++ +R ++ AS+ +S+ KT+ GD P + N E + V+E +
Sbjct: 3 SLRSRKVIPASEMVSDGKTEKDASGDSPTSVLNEEENCEEKSVTVVEEEI 52
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 264 (98.0 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 77/236 (32%), Positives = 119/236 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1055 SGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1102
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1103 DGGITGALRQEAIDRFNAHGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1161
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ V YR + ++EE+I QV K + +V R + ++SK+
Sbjct: 1162 AFSRAHRIGQANKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKAGSMSKQ 1219
Query: 1293 EMLHLFEFGDDEN-PDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESL 1347
E+ + +FG +E D +KE N A+ L + + D ++++
Sbjct: 1220 ELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNM 1275
Score = 213 (80.0 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 86/303 (28%), Positives = 139/303 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 749 QGTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP-- 805
Query: 811 LKPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREI 866
K V D +D RA + ++ + G AF R HV +
Sbjct: 806 -KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELIT 862
Query: 867 CHALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 923
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + ++
Sbjct: 863 IDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLL 922
Query: 924 DFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV 983
+F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 923 NFL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADV 968
Query: 984 VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIW 1042
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L +
Sbjct: 969 FK-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCC 1025
Query: 1043 NHP 1045
NHP
Sbjct: 1026 NHP 1028
Score = 55 (24.4 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 377 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 419
Score = 48 (22.0 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 855 KHVKDRNMAREICHALQDGPDILVCD 880
K +D +M E C +DG ++L CD
Sbjct: 445 KEEEDDHM--EYCRVCKDGGELLCCD 468
Score = 46 (21.3 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 590
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 454 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 502
Score = 43 (20.2 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 375 QDYCEVCQQGGEIILCD 391
Score = 37 (18.1 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1161 GKQGKLWKKGKDWYRLDG 1178
GK ++W + D++ L G
Sbjct: 1732 GKLNEIWHRRHDYWLLAG 1749
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 256 (95.2 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 101/373 (27%), Positives = 163/373 (43%)
Query: 701 YIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHT 760
++ ++ K E IP I+A+L+ +Q G+ W + + K K L IL
Sbjct: 1244 FLEQLLDGKKLENYEIPVPINAELRKYQQDGVN--W---LAFLNKYK-----LHGILCDD 1293
Query: 761 MGLGKTFQVIAFL----------YTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
MGLGKT Q I L Y + +L+V P + +W E K+ E
Sbjct: 1294 MGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSRE 1353
Query: 811 -LKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRN-LSFGKHVKDRNMAREICH 868
L PL + R R L + + + Y RN + F +++K C
Sbjct: 1354 YLNPLH-YTGPPTERVR----LQHQVKRHNLIVASYDVVRNDIDFFRNIKFN-----YC- 1402
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ DE H+IKN + ++A+KQ+ RI L+G+P+QNN++E + + DF+
Sbjct: 1403 ---------ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMP 1453
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
GFLG+ +F R+ PI + S+S + + L+ Q+ F+ R V +DL
Sbjct: 1454 GFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDL 1513
Query: 989 PPKTVFVITVKLSPLQRRLYKRFL------DLHGFTNDRVSNEKIRKS-------FFAGY 1035
PPK + LSPLQ +LY+ F D+ + +E+ K F
Sbjct: 1514 PPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQAL 1573
Query: 1036 QALAQIWNHPGIL 1048
Q L ++ NHP ++
Sbjct: 1574 QYLRKLCNHPALV 1586
Score = 228 (85.3 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 61/187 (32%), Positives = 95/187 (50%)
Query: 1138 LVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197
L+F Q LD++E L K P + RLDG +R +V RFN +
Sbjct: 1649 LIFCQLKSMLDIVEHDLLKPHLPSVT---------YLRLDGSIPPGQRHSIVSRFNN--D 1697
Query: 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 1257
+ L++T G LG+NL A+ V+ V+ WNP DLQA+ RA R GQ + V YRL+
Sbjct: 1698 PSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLIT 1757
Query: 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFGDDENPDPLTAVSKEN 1316
GT+EEKI Q K +A V+ ++ +++ +++L LF D + A + +
Sbjct: 1758 RGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEK--ADTSTS 1815
Query: 1317 GQGSSQN 1323
G+ S ++
Sbjct: 1816 GKASMKS 1822
Score = 47 (21.6 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 100 LEAAVEDEMTVYKEQWEAALDELETESAHLLEQL-DGAGIE 139
LEA + D + +E L +L+ + H LEQL DG +E
Sbjct: 1220 LEAGIPDPPNMSEE-----LIQLKAKERHFLEQLLDGKKLE 1255
Score = 37 (18.1 bits), Expect = 5.4e-12, Sum P(3) = 5.4e-12
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 185 FLQTERPVRRRHGK 198
FL TER R+GK
Sbjct: 1455 FLGTERQFAARYGK 1468
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 273 (101.2 bits), Expect = 1.5e-34, Sum P(4) = 1.5e-34
Identities = 78/236 (33%), Positives = 120/236 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L G + L+FSQ LDL+E +L +G + R+
Sbjct: 1015 SGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY------------EGYKYERI 1062
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG + RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1063 DGGITGALRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQ 1121
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ V YR + ++EE+I QV K + +V R + ++SK+
Sbjct: 1122 AFSRAHRIGQANKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKAGSMSKQ 1179
Query: 1293 EMLHLFEFGDDEN-PDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESL 1347
E+ + +FG +E D +KE N A+ L + + D ++++
Sbjct: 1180 ELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATDDTDVQNM 1235
Score = 215 (80.7 bits), Expect = 1.5e-34, Sum P(4) = 1.5e-34
Identities = 98/362 (27%), Positives = 157/362 (43%)
Query: 692 EVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDK 751
E+ GD N K E R ++ L +Q+ G+ W S +
Sbjct: 660 EIQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLN--WLRF--------SWAQ 709
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 710 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTK-GPFLVSAPLSTIINWEREFQMWAP--- 765
Query: 812 KPLRVFMLEDVSRDRRAELLA-KWRAKGGVFLIGYTAF---RNLSFGKHVKDRNMAREIC 867
K V D +D RA + ++ + G AF R HV +
Sbjct: 766 KFYVVTYTGD--KDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITI 823
Query: 868 HALQDGP---DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVD 924
G LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++
Sbjct: 824 DQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLN 883
Query: 925 FVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVV 984
F+ + F N + +E + + + ED +I ++ H L ++R+ +V
Sbjct: 884 FL------TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVF 929
Query: 985 KKDLPPKTVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWN 1043
K ++P KT ++ V+LSP+Q++ YK L + N R ++ S L + N
Sbjct: 930 K-NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV--SLLNIMMDLKKCCN 986
Query: 1044 HP 1045
HP
Sbjct: 987 HP 988
Score = 55 (24.4 bits), Expect = 1.5e-34, Sum P(4) = 1.5e-34
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQC 581
YC C + +++ C +C + C+ + A E + SC C
Sbjct: 338 YCEVCQQGGEIILCDTCPRAYHLVCLDPELDRA---PEGKWSCPHC 380
Score = 48 (22.0 bits), Expect = 1.6e-17, Sum P(4) = 1.6e-17
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 855 KHVKDRNMAREICHALQDGPDILVCD 880
K +D +M E C +DG ++L CD
Sbjct: 405 KEEEDDHM--EYCRVCKDGGELLCCD 428
Score = 46 (21.3 bits), Expect = 1.2e-33, Sum P(4) = 1.2e-33
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 590
YC C +L+ C +C + + C+ + + + W C C+ +LK
Sbjct: 414 YCRVCKDGGELLCCDACISSYHIHCLNPPLPD------IPNGEWLCPRCTCPVLK 462
Score = 43 (20.2 bits), Expect = 3.0e-16, Sum P(3) = 3.0e-16
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 336 QDYCEVCQQGGEIILCD 352
Score = 37 (18.1 bits), Expect = 1.5e-34, Sum P(4) = 1.5e-34
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 191 PVRRRHGKLLEEGASGFLQKKIANDGSENGGKEV 224
PVR K L+ G G +KK+ + G +EV
Sbjct: 298 PVR---AKKLKRGRPGRKKKKVLGCPTVTGEEEV 328
Score = 37 (18.1 bits), Expect = 2.1e-10, Sum P(4) = 2.1e-10
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1161 GKQGKLWKKGKDWYRLDG 1178
GK ++W + D++ L G
Sbjct: 1657 GKLNEIWHRRHDYWLLAG 1674
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 268 (99.4 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 71/192 (36%), Positives = 106/192 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 939 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 986
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 987 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1045
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ K V YR + ++EE+I QV K + +V R + +++K+
Sbjct: 1046 AFSRAHRIGQNKKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKSGSMTKQ 1103
Query: 1293 EMLHLFEFGDDE 1304
E+ + +FG +E
Sbjct: 1104 ELDDILKFGTEE 1115
Score = 204 (76.9 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 633 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 691
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
E S R E + A + G + + F + + I A
Sbjct: 692 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 750
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 751 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 809
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 987
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 810 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 855
Query: 988 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 856 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 912
Score = 63 (27.2 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 523 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 578
KK + D D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 244 KKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 300
Query: 579 WQC 581
C
Sbjct: 301 PHC 303
Score = 46 (21.3 bits), Expect = 2.1e-18, Sum P(4) = 2.1e-18
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 865 EICHALQDGPDILVCD 880
E C +DG ++L CD
Sbjct: 333 EFCRVCKDGGELLCCD 348
Score = 43 (20.2 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 259 QDYCEVCQQGGEIILCD 275
Score = 42 (19.8 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 299 EKELALSEEQRKKFRKVKEEDD 320
+K+ L +++ KK ++ K++DD
Sbjct: 14 KKKKKLKDKKEKKAKRKKKDDD 35
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 268 (99.4 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 71/192 (36%), Positives = 106/192 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 1021 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 1068
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1069 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1127
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ K V YR + ++EE+I QV K + +V R + +++K+
Sbjct: 1128 AFSRAHRIGQNKKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKSGSMTKQ 1185
Query: 1293 EMLHLFEFGDDE 1304
E+ + +FG +E
Sbjct: 1186 ELDDILKFGTEE 1197
Score = 210 (79.0 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 82/300 (27%), Positives = 138/300 (46%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 715 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 773
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
E S R E + A +GG + + F + + I A
Sbjct: 774 YVVTYTGDKESRSVIRENEFSFEDNAIRGGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 832
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 833 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 891
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 987
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 892 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 937
Query: 988 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 938 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 994
Score = 63 (27.2 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 523 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 578
KK + D D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 326 KKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 382
Query: 579 WQC 581
C
Sbjct: 383 PHC 385
Score = 46 (21.3 bits), Expect = 8.6e-18, Sum P(4) = 8.6e-18
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 865 EICHALQDGPDILVCD 880
E C +DG ++L CD
Sbjct: 415 EFCRVCKDGGELLCCD 430
Score = 43 (20.2 bits), Expect = 6.5e-16, Sum P(3) = 6.5e-16
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 341 QDYCEVCQQGGEIILCD 357
Score = 39 (18.8 bits), Expect = 1.6e-34, Sum P(4) = 1.6e-34
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 299 EKELALSEEQRKKF-RKVKEEDD 320
+K+ L E++ KK RK ++ED+
Sbjct: 97 KKKKKLKEKKEKKAKRKKRDEDE 119
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 268 (99.4 bits), Expect = 1.8e-34, Sum P(4) = 1.8e-34
Identities = 71/192 (36%), Positives = 106/192 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 955 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 1002
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1003 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1061
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ K V YR + ++EE+I QV K + +V R + +++K+
Sbjct: 1062 AFSRAHRIGQNKKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKSGSMTKQ 1119
Query: 1293 EMLHLFEFGDDE 1304
E+ + +FG +E
Sbjct: 1120 ELDDILKFGTEE 1131
Score = 204 (76.9 bits), Expect = 1.8e-34, Sum P(4) = 1.8e-34
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 649 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 707
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
E S R E + A + G + + F + + I A
Sbjct: 708 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 766
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 767 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 825
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 987
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 826 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 871
Query: 988 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 872 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 928
Score = 63 (27.2 bits), Expect = 1.8e-34, Sum P(4) = 1.8e-34
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 523 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 578
KK + D D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 260 KKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 316
Query: 579 WQC 581
C
Sbjct: 317 PHC 319
Score = 46 (21.3 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 865 EICHALQDGPDILVCD 880
E C +DG ++L CD
Sbjct: 349 EFCRVCKDGGELLCCD 364
Score = 43 (20.2 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 275 QDYCEVCQQGGEIILCD 291
Score = 42 (19.8 bits), Expect = 1.8e-34, Sum P(4) = 1.8e-34
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 299 EKELALSEEQRKKFRKVKEEDD 320
+K+ L +++ KK ++ K++DD
Sbjct: 30 KKKKKLKDKKEKKAKRKKKDDD 51
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 240 (89.5 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 61/164 (37%), Positives = 89/164 (54%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
+GK+VL+ +L G + L+FSQ + LD++E YL + P + R+
Sbjct: 475 AGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYP------------YERI 522
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DGR + RQ ++RF+ P + R L+ TRAG LGINL +A+ II D WNP DLQ
Sbjct: 523 DGRVRGNLRQAAIDRFSRPDSDRF-VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQ 581
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVV 1280
A R R GQ+K V YRL+ + E +++ + K GL V+
Sbjct: 582 AQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVL 625
Score = 233 (87.1 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 82/303 (27%), Positives = 140/303 (46%)
Query: 755 CILAHTMGLGKTFQVIAFLYTA-MRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKP 813
CILA MGLGKT Q I FLY ++ ++ G L++ P++ + NW++EF W +EL
Sbjct: 175 CILADEMGLGKTIQSITFLYEIYLKGIH-G--PFLVIAPLSTIPNWEREFRTW--TELNV 229
Query: 814 LRVFMLEDVSRDRRAELLAKW-RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 872
+ V+ SR R +L + + G + G F + + M C L++
Sbjct: 230 V-VYHGSQASR-RTIQLYEMYFKDPQGRVIKGSYKFHAI-----ITTFEMILTDCPELRN 282
Query: 873 GP-DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFL 931
P +V DEAH +KN + LK + + ++ LTG+PLQN + E + ++ F+ G
Sbjct: 283 IPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPGRF 342
Query: 932 GSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPK 991
S F F + T E V Q+ + LK + R V+K+L PK
Sbjct: 343 PSETTFMQEFGDL--------KTEEQV----QKLQAI---LKPMMLRRLKEDVEKNLAPK 387
Query: 992 TVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLT 1051
+I V+L+ +Q++ Y+ L+ + + + + L + NHP ++
Sbjct: 388 EETIIEVELTNIQKKYYRAILEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGA 447
Query: 1052 KDK 1054
++K
Sbjct: 448 EEK 450
Score = 41 (19.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1086 DFLQGKNDDGFFQKDWWNDLLHEHTYKEL 1114
D+L N D FQ+D + L H K L
Sbjct: 900 DWLTTCNPDVLFQEDSYRKHLKHHCNKVL 928
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 215 (80.7 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 69/199 (34%), Positives = 101/199 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1033 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1080
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1081 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1139
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKI-----YKRQVTKEGLAARVVDRQQV-H-RTI 1289
A RA R GQ V RL ++EEKI YK V ++ + A + D++ H R
Sbjct: 1140 AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRA 1199
Query: 1290 SKEEMLHLFEFGDDENPDP 1308
+ +L E ++E+ P
Sbjct: 1200 FLQAILEHEEENEEEDEVP 1218
Score = 178 (67.7 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 877 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 832 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 891
Query: 936 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 892 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 948
Query: 995 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 1049
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 949 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1007
Score = 140 (54.3 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 56/221 (25%), Positives = 96/221 (43%)
Query: 641 DAELGEETKRKIAIEKERQERL----KSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 696
D++ EE + + + +E +E++ S +V +++ + D D G
Sbjct: 623 DSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 682
Query: 697 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 756
+ + + E+ E+ + I+ LK +Q+ G+ +M V + L I
Sbjct: 683 QSYYTVAHAISERVEKQSAL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGI 730
Query: 757 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 816
LA MGLGKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 731 LADEMGLGKTIQTIALITYLMEHKRLN-GPYLIIVPLSTLSNWTYEFDKWAPSVVK---- 785
Query: 817 FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV 857
+ RR+ L+ + R+ G F + T + + KH+
Sbjct: 786 ISYKGTPAMRRS-LVPQLRS--GKFNVLLTTYEYIIKDKHI 823
Score = 44 (20.5 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 189 ERPVRRRHGKLLEEGASGFLQKKIANDGSE-NGGKEVSDI 227
E+ RRR K EE A G + + DG + ++SD+
Sbjct: 539 EKKKRRRRKKKAEENAEGG-ESALGPDGEPIDESSQMSDL 577
Score = 44 (20.5 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVT 680
L +A + E+ +++ IE+ER+ R K QV + +L T
Sbjct: 406 LREARMTEKLEKQQKIEQERKRRQKH-QVPGALMGRLPKQAT 446
Score = 37 (18.1 bits), Expect = 9.9e-34, Sum P(4) = 9.9e-34
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 289 DPFVADA--IANEKELALSEEQRKKFRKVKEEDDANMD 324
D +VA+ + E + A + +++KK R+ K++ + N +
Sbjct: 518 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAE 555
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 269 (99.8 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 80/235 (34%), Positives = 117/235 (49%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ L +LT + G + L++SQ +DL+E Y+ +++K + RL
Sbjct: 1100 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYM-----------VYRK-HTYMRL 1147
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG ++ SER+ +V F + L+STRAG LGINL +A+ VI D WNPT D Q
Sbjct: 1148 DGSSKISERRDMVADFQN--RNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1205
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR-TISKEEML 1295
A+ RA R GQTK V YRL+ GT+EE+I +R K + V+ T+ +E++
Sbjct: 1206 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1265
Query: 1296 HLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGK 1350
L D+E L +E Q + TN + K K + L GK
Sbjct: 1266 SLL-LDDEELEKKLRLRQEEKRQ--QEETNRVKERKRKREKYAEKKKKEDELDGK 1317
Score = 218 (81.8 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 71/261 (27%), Positives = 125/261 (47%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
++G+ ILA MGLGKT Q IA L N+ LI++P + L+NW QEF ++ P
Sbjct: 534 EQGINGILADEMGLGKTVQSIALLAHLAERENIW-GPFLIISPASTLNNWHQEFTRFVPK 592
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA-REICH 868
+V DR+ + W K L YT ++ F + + +++ +
Sbjct: 593 ----FKVLPYWGNPHDRKV-IRRFWSQKT---L--YT--QDAPFHVVITSYQLVVQDVKY 640
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ +V DEA +K++ + + L Q +C+ R+ LTG+P+QN + E + ++ F+
Sbjct: 641 FQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 700
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
S EF F IE+ S ++ ++ R H++ LK F+ R V+ +L
Sbjct: 701 TLFDSHEEFNEWFSKDIESHAENKSAIDENQL--SRLHMI---LKPFMLRRIKKDVENEL 755
Query: 989 PPKTVFVITVKLSPLQRRLYK 1009
K ++ +L+ Q+ LY+
Sbjct: 756 SDKIEILMYCQLTSRQKLLYQ 776
Score = 127 (49.8 bits), Expect = 5.3e-25, Sum P(3) = 5.3e-25
Identities = 43/156 (27%), Positives = 73/156 (46%)
Query: 658 RQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGY-----IVNVVREKGEE 712
+ + LK+ + + S D S A++ + TG+ + N GE+
Sbjct: 448 KAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAANKSGTGFGESYSLANPSIRAGED 507
Query: 713 AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF 772
+ P+ + KLK +Q+ G+ ++ N+ + +G+ ILA MGLGKT Q IA
Sbjct: 508 IPQ-PTIFNGKLKGYQLKGMNWL-ANLYE---------QGINGILADEMGLGKTVQSIAL 556
Query: 773 LYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
L N+ LI++P + L+NW QEF ++ P
Sbjct: 557 LAHLAERENIW-GPFLIISPASTLNNWHQEFTRFVP 591
Score = 51 (23.0 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 963 QRSHILYEQLKGFVQRMDMNVVKKDLP 989
++ H+ EQL +++ +++VKK+LP
Sbjct: 264 KKKHLSIEQLNARRRKVWLSIVKKELP 290
Score = 47 (21.6 bits), Expect = 8.9e-17, Sum P(3) = 8.9e-17
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 644 LGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSV 679
L + K KI+IE Q + S Q ++ S LMN V
Sbjct: 774 LYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLV 809
Score = 42 (19.8 bits), Expect = 6.5e-11, Sum P(3) = 6.5e-11
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1108 EHTYKELDYSGKMVLLLDILTMCSNMGD 1135
+HTY LD S K+ D++ N D
Sbjct: 1141 KHTYMRLDGSSKISERRDMVADFQNRND 1168
Score = 39 (18.8 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 95 LHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAG 137
+ DD E ++D + + + + E LL + GAG
Sbjct: 46 ISSDDSEDGLDDSNPLLPQSGDPLIQVKEEPPNSLLGETSGAG 88
Score = 37 (18.1 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 1074 NVVIGEKPRNMNDFLQGKNDDGFFQKD 1100
N+VI P N L DD F D
Sbjct: 1324 NLVIPFVPSADNSNLSADGDDSFISVD 1350
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 215 (80.7 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 69/199 (34%), Positives = 101/199 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1049 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1096
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1097 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1155
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKI-----YKRQVTKEGLAARVVDRQQV-H-RTI 1289
A RA R GQ V RL ++EEKI YK V ++ + A + D++ H R
Sbjct: 1156 AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRA 1215
Query: 1290 SKEEMLHLFEFGDDENPDP 1308
+ +L E ++E+ P
Sbjct: 1216 FLQAILEHEEENEEEDEVP 1234
Score = 178 (67.7 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 877 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 848 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 907
Query: 936 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 908 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 964
Query: 995 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 1049
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 965 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1023
Score = 140 (54.3 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 56/221 (25%), Positives = 96/221 (43%)
Query: 641 DAELGEETKRKIAIEKERQERL----KSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 696
D++ EE + + + +E +E++ S +V +++ + D D G
Sbjct: 639 DSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 698
Query: 697 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 756
+ + + E+ E+ + I+ LK +Q+ G+ +M V + L I
Sbjct: 699 QSYYTVAHAISERVEKQSAL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGI 746
Query: 757 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 816
LA MGLGKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 747 LADEMGLGKTIQTIALITYLMEHKRLN-GPYLIIVPLSTLSNWTYEFDKWAPSVVK---- 801
Query: 817 FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV 857
+ RR+ L+ + R+ G F + T + + KH+
Sbjct: 802 ISYKGTPAMRRS-LVPQLRS--GKFNVLLTTYEYIIKDKHI 839
Score = 67 (28.6 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 697
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 423 LREARMTEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVAGKIQKLSKA 479
Query: 698 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 733
+ + N RE+ +E RI +L A G R
Sbjct: 480 VATWHANTEREQKKETERIEKERMRRLMAEDEEGYR 515
Score = 44 (20.5 bits), Expect = 2.1e-34, Sum P(4) = 2.1e-34
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 189 ERPVRRRHGKLLEEGASGFLQKKIANDGSE-NGGKEVSDI 227
E+ RRR K EE A G + + DG + ++SD+
Sbjct: 555 EKKKRRRRKKKAEENAEGG-ESALGPDGEPIDESSQMSDL 593
Score = 38 (18.4 bits), Expect = 7.1e-33, Sum P(5) = 7.1e-33
Identities = 30/138 (21%), Positives = 56/138 (40%)
Query: 80 LVKLKNEVREELAQALHGDD-LEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAG- 137
L+ + ++R+E+ + D LE A+ + YK L E A + E+L+
Sbjct: 385 LLNFQRQLRQEVVACMRRDTTLETALNSK--AYKRSKRQTLRE-----ARMTEKLEKQQK 437
Query: 138 IELPSLYRLIENQVPNGCCTEA--WKRRAHWVGSQVTSEMRESIAG------AEDFLQTE 189
IE R + N A +K V ++ ++ +++A E +TE
Sbjct: 438 IEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKI-QKLSKAVATWHANTEREQKKETE 496
Query: 190 RPVRRRHGKLLEEGASGF 207
R + R +L+ E G+
Sbjct: 497 RIEKERMRRLMAEDEEGY 514
Score = 37 (18.1 bits), Expect = 7.1e-33, Sum P(5) = 7.1e-33
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 289 DPFVADA--IANEKELALSEEQRKKFRKVKEEDDANMD 324
D +VA+ + E + A + +++KK R+ K++ + N +
Sbjct: 534 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAE 571
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 254 (94.5 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 115/411 (27%), Positives = 179/411 (43%)
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+ L
Sbjct: 517 GLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT-L 573
Query: 812 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 871
K L + ++ + R + +++ + V + Y + S DR++ R + L
Sbjct: 574 KVLCYYGSQEERKQIRYNIHSRYE-EYNVIVTTYNCAISSS-----DDRSLFRRL--KL- 624
Query: 872 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 930
+ + DE HM+KN + Q L + R+ LTG+P+QNNL+E +++FV F
Sbjct: 625 ---NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 681
Query: 931 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 990
S+ E R F + + S E +I + + I K F+ R V K LPP
Sbjct: 682 SSSTSEIRRMFSSKTKPADE-QSIYEKERIAHAKQII-----KPFILRRVKEEVLKQLPP 735
Query: 991 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL 1050
K + +S Q +LY ++L ++N + L ++ NHP + +
Sbjct: 736 KKDRIELCAMSEKQEQLY---MNLFNRLKKSINNMEKNTEMCNVMMQLRKMANHPLLHRQ 792
Query: 1051 TKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDF------LQGKNDDGFFQKDWWN 1103
+ + N +I E M DF Q ++ + F Q D
Sbjct: 793 YYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNF-QLDM-- 849
Query: 1104 DLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 1154
DL+ LD SGK +L IL+ GD+ ++FSQ LD++E L
Sbjct: 850 DLI-------LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 892
Score = 219 (82.2 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 63/154 (40%), Positives = 86/154 (55%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
LD SGK +L IL+ GD+ ++FSQ LD++E L Q + +
Sbjct: 853 LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKH-----HQHR-------Y 899
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 900 LRLDGKTQISERIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 957
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 1267
D QA R R GQTK V +L+ GT+EE + K
Sbjct: 958 DKQAEDRCHRVGQTKEVLVIKLIGQGTIEESMLK 991
Score = 121 (47.7 bits), Expect = 1.5e-19, Sum P(4) = 1.5e-19
Identities = 43/145 (29%), Positives = 66/145 (45%)
Query: 692 EVLGDAITGYIVNVVREKGEEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSG 749
E + + +T + + G PS + S LK +Q VG+ W ++
Sbjct: 465 EDISNKLTKQVTMLTGNGGGWNTEQPSILNQSLSLKPYQKVGLN--WLALVHK------- 515
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+
Sbjct: 516 -HGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT 572
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKW 834
LK L + ++ + R + +++
Sbjct: 573 -LKVLCYYGSQEERKQIRYNIHSRY 596
Score = 46 (21.3 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 445 IIIGSDEADVVKDECSTKLEDHSVSPENI 473
I + SD DVV CS+ +++ + + +
Sbjct: 92 IDLSSDSEDVVSPNCSSTVQEKKFNKDTV 120
Score = 44 (20.5 bits), Expect = 2.5e-33, Sum P(4) = 2.5e-33
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 353 EDSAVETRPLVDASKSLSNKKTDDG----DMPGNNNEVALQNLETGVLE 397
EDS+V P D S+S K G D+ ++ +V N + V E
Sbjct: 64 EDSSVPETPENDRKASISYFKNQRGIQYIDLSSDSEDVVSPNCSSTVQE 112
Score = 38 (18.4 bits), Expect = 2.5e-33, Sum P(4) = 2.5e-33
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 446 IIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLH 483
+I E D D S+ ED+S E + D LH
Sbjct: 356 VIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILH 393
Score = 38 (18.4 bits), Expect = 1.0e-32, Sum P(4) = 1.0e-32
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 208 LQKKIANDGSENGGKEVSDINWNSVNKI 235
++KK + G E+ S NW I
Sbjct: 230 MKKKRLDHGEESNESAESSTNWEKQESI 257
Score = 37 (18.1 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 843 IGYTAFRNLSFGKHVKDRNMAREICHALQD 872
+G + + S G+ V + +I H LQD
Sbjct: 368 VGSSLDEDYSSGEEVMEDGYKGKILHFLQD 397
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 253 (94.1 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 116/411 (28%), Positives = 178/411 (43%)
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+ L
Sbjct: 515 GLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPH--LIVVPASTIDNWLREVNLWCPT-L 571
Query: 812 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 871
K L + ++ + R + +++ V + Y + S DR++ R + L
Sbjct: 572 KVLCYYGSQEERKQIRFNIHSRYEDYN-VIVTTYNCAISSS-----DDRSLFRRL--KL- 622
Query: 872 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 930
+ + DE HM+KN + Q L + R+ LTG+P+QNNL+E +++FV F
Sbjct: 623 ---NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 679
Query: 931 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 990
S+ E R F + ++ S E +I + + I K F+ R V K LPP
Sbjct: 680 SSSTSEIRRMFSSKTKSADE-QSIYEKERIAHAKQII-----KPFILRRVKEEVLKQLPP 733
Query: 991 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL 1050
K + +S Q +LY L L ++N + L ++ NHP + +
Sbjct: 734 KKDRIELCAMSEKQEQLY---LGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLHRQ 790
Query: 1051 TKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDF------LQGKNDDGFFQKDWWN 1103
+ + N +I E M DF Q ++ + F Q D
Sbjct: 791 YYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNF-QLDM-- 847
Query: 1104 DLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 1154
DL+ LD SGK +L IL+ GD+ ++FSQ LD++E L
Sbjct: 848 DLI-------LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 890
Score = 220 (82.5 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 63/154 (40%), Positives = 87/154 (56%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
LD SGK +L IL+ GD+ ++FSQ LD++E L Q + +
Sbjct: 851 LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKH-----HQHR-------Y 897
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 898 LRLDGKTQISERIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 1267
D QA R R GQTK V +L++ GT+EE + K
Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
Score = 123 (48.4 bits), Expect = 8.6e-21, Sum P(3) = 8.6e-21
Identities = 43/145 (29%), Positives = 67/145 (46%)
Query: 692 EVLGDAITGYIVNVVREKGEEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSG 749
E + + +T + + G + PS + S LK +Q VG+ W ++
Sbjct: 463 EDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLN--WLALVHK------- 513
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+
Sbjct: 514 -HGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPH--LIVVPASTIDNWLREVNLWCPT 570
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKW 834
LK L + ++ + R + +++
Sbjct: 571 -LKVLCYYGSQEERKQIRFNIHSRY 594
Score = 46 (21.3 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 445 IIIGSDEADVVKDECSTKLEDHSVSPENI 473
I + SD DVV CS +++ + + + +
Sbjct: 92 IDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120
Score = 37 (18.1 bits), Expect = 1.9e-33, Sum P(3) = 1.9e-33
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 446 IIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLH 483
++ E D D S+ ED+S E + D LH
Sbjct: 354 VVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILH 391
Score = 37 (18.1 bits), Expect = 5.3e-12, Sum P(3) = 5.3e-12
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 843 IGYTAFRNLSFGKHVKDRNMAREICHALQD 872
+G + + S G+ V + +I H LQD
Sbjct: 366 VGSSLDEDYSSGEEVMEDGYKGKILHFLQD 395
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 215 (80.7 bits), Expect = 2.4e-34, Sum P(4) = 2.4e-34
Identities = 69/199 (34%), Positives = 101/199 (50%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK LL IL + L+F Q + ++E Y + + L+ RL
Sbjct: 1031 SGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF------RNFLY------LRL 1078
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T+S +R L+++FNEP + L+STRAG LG+NL +A+ V+I D WNP DLQ
Sbjct: 1079 DGTTKSEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1137
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKI-----YKRQVTKEGLAARVVDRQQV-H-RTI 1289
A RA R GQ V RL ++EEKI YK V ++ + A + D++ H R
Sbjct: 1138 AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRA 1197
Query: 1290 SKEEMLHLFEFGDDENPDP 1308
+ +L E ++E+ P
Sbjct: 1198 FLQAILEHEEENEEEDEVP 1216
Score = 178 (67.7 bits), Expect = 2.4e-34, Sum P(4) = 2.4e-34
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 877 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KN TQ L RRI LTG+PLQN L E + +++F+ S
Sbjct: 830 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 889
Query: 936 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 890 TFEQWFNAPFAMTGERVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVESQLPEKVEY 946
Query: 995 VITVKLSPLQRRLYKRFLDLHGF--TNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 1049
VI +S LQ+ LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 947 VIKCDMSALQKILY-RHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1005
Score = 140 (54.3 bits), Expect = 2.4e-34, Sum P(4) = 2.4e-34
Identities = 56/221 (25%), Positives = 96/221 (43%)
Query: 641 DAELGEETKRKIAIEKERQERL----KSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGD 696
D++ EE + + + +E +E++ S +V +++ + D D G
Sbjct: 621 DSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGS 680
Query: 697 AITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI 756
+ + + E+ E+ + I+ LK +Q+ G+ +M V + L I
Sbjct: 681 QSYYTVAHAISERVEKQSAL--LINGTLKHYQLQGLEWM----------VSLYNNNLNGI 728
Query: 757 LAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRV 816
LA MGLGKT Q IA + M L LI+ P++ L NW EF KW PS +K
Sbjct: 729 LADEMGLGKTIQTIALITYLMEHKRLN-GPYLIIVPLSTLSNWTYEFDKWAPSVVK---- 783
Query: 817 FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHV 857
+ RR+ L+ + R+ G F + T + + KH+
Sbjct: 784 ISYKGTPAMRRS-LVPQLRS--GKFNVLLTTYEYIIKDKHI 821
Score = 67 (28.6 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 697
L +A + E+ +++ IE+ER+ R K Q S L ++ + S I+ L A
Sbjct: 405 LREARMTEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFKEYHRSVAGKIQKLSKA 461
Query: 698 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 733
+ + N RE+ +E RI +L A G R
Sbjct: 462 VATWHANTEREQKKETERIEKERMRRLMAEDEEGYR 497
Score = 43 (20.2 bits), Expect = 2.4e-34, Sum P(4) = 2.4e-34
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 189 ERPVRRRHGKLLEEGASGFLQKKIANDGSE-NGGKEVSDI 227
E+ RRR K EE A G + + DG + ++SD+
Sbjct: 537 EKKKRRRKKKKAEENAEGG-ESALGPDGEPIDESSQMSDL 575
Score = 38 (18.4 bits), Expect = 4.9e-33, Sum P(5) = 4.9e-33
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 289 DPFVADA--IANEKELALSEEQRKKFRKVKEEDDANMD 324
D +VA+ + E + A + +++KK R+ K++ + N +
Sbjct: 516 DEYVANLTNLVWEHKQAQAAKEKKKRRRKKKKAEENAE 553
Score = 38 (18.4 bits), Expect = 4.9e-33, Sum P(5) = 4.9e-33
Identities = 30/138 (21%), Positives = 56/138 (40%)
Query: 80 LVKLKNEVREELAQALHGDD-LEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAG- 137
L+ + ++R+E+ + D LE A+ + YK L E A + E+L+
Sbjct: 367 LLNFQRQLRQEVVACMRRDTTLETALNSK--AYKRSKRQTLRE-----ARMTEKLEKQQK 419
Query: 138 IELPSLYRLIENQVPNGCCTEA--WKRRAHWVGSQVTSEMRESIAG------AEDFLQTE 189
IE R + N A +K V ++ ++ +++A E +TE
Sbjct: 420 IEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKI-QKLSKAVATWHANTEREQKKETE 478
Query: 190 RPVRRRHGKLLEEGASGF 207
R + R +L+ E G+
Sbjct: 479 RIEKERMRRLMAEDEEGY 496
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 227 (85.0 bits), Expect = 2.5e-34, Sum P(4) = 2.5e-34
Identities = 74/213 (34%), Positives = 101/213 (47%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK LL IL K L+F Q + ++E Y + +G + RL
Sbjct: 878 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAY------------RGFKYLRL 925
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG T++ +R L++ FNEP L+STRAG LG+NL SA+ VII D WNP DLQ
Sbjct: 926 DGTTKAEDRGMLLKTFNEP-GSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ 984
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKI-----YKRQVTKEGLAARVVDRQQVHRTISK 1291
A RA R GQ V RL ++EEKI YK V ++ + A + D+ ++ S
Sbjct: 985 AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQ----KSSSH 1040
Query: 1292 EEMLHLFEFGDDENPDPLTAVSKENGQGSSQNT 1324
E L + E D S +G S +T
Sbjct: 1041 ERRAFLQAILEHEEQDESRHCSTGSGSASFAHT 1073
Score = 177 (67.4 bits), Expect = 2.5e-34, Sum P(4) = 2.5e-34
Identities = 54/180 (30%), Positives = 84/180 (46%)
Query: 877 LVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSH 935
++ DE H +KN TQ L RR+ LTG+PLQN L E + +++F+ S
Sbjct: 677 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 736
Query: 936 EFRNRFQNPIE-NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
F F P G+ + E+ ++ +R H + L+ F+ R V+ LP K +
Sbjct: 737 TFEQWFNAPFAMTGEKVDLNEEETILIIRRLH---KVLRPFLLRRLKKEVEAQLPEKVEY 793
Query: 995 VITVKLSPLQRRLYKRFLDLHG--FTNDRVSNEKIR---KSFFAGYQALAQIWNHPGILQ 1049
VI +S LQR LY R + G T+ ++K + K+ L +I NHP + Q
Sbjct: 794 VIKCDMSALQRVLY-RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 852
Score = 126 (49.4 bits), Expect = 2.5e-34, Sum P(4) = 2.5e-34
Identities = 40/140 (28%), Positives = 65/140 (46%)
Query: 675 LMNSVTLDGDLSAGASIEVLGDAITGY--IVNVVREKGEEAVRIPSSISAKLKAHQVVGI 732
++ + D D G S + L + Y + + V E+ ++ + ++ LK +Q+ G+
Sbjct: 505 IIENAKQDVDDEYGVS-QALARGLQSYYAVAHAVTERVDKQSAL--MVNGVLKQYQIKGL 561
Query: 733 RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 792
++ V + L ILA MGLGKT Q IA + M + LI+ P
Sbjct: 562 EWL----------VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN-GPFLIIVP 610
Query: 793 VNVLHNWKQEFMKWRPSELK 812
++ L NW EF KW PS +K
Sbjct: 611 LSTLSNWAYEFDKWAPSVVK 630
Score = 64 (27.6 bits), Expect = 7.1e-28, Sum P(4) = 7.1e-28
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTL-DGDLSAGASIEVLGDA 697
L +A + E+ +++ IE+ER+ R K Q S L ++ + S ++ L A
Sbjct: 246 LREARITEKLEKQQKIEQERKRRQKH---QEYLNSILQHAKDFREYHRSVTGKLQKLTKA 302
Query: 698 ITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIR 733
+ Y N RE+ +E RI +L A G R
Sbjct: 303 VATYHANTEREQKKENERIEKERMRRLMAEDEEGYR 338
Score = 41 (19.5 bits), Expect = 2.5e-34, Sum P(4) = 2.5e-34
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 289 DPFVA---DAIANEKELALSEEQRKKFRKVKEED 319
D +VA + + K +++E++KK +K K E+
Sbjct: 357 DEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN 390
Score = 40 (19.1 bits), Expect = 7.1e-28, Sum P(4) = 7.1e-28
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 872 DGPDILVCDEAHMIKNTRAD 891
D D+ D H+I+N + D
Sbjct: 493 DSDDVSEVDARHIIENAKQD 512
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 253 (94.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 74/224 (33%), Positives = 111/224 (49%)
Query: 1099 KDWWNDLLHE-HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKL 1157
+D +N + H + +GK+VL+ +L G K L+FSQ + LD++E YL
Sbjct: 1161 RDTYNPSASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYL--- 1217
Query: 1158 PRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLH 1217
+ K+ + R+DGR + RQ ++RF++P + R L+ TRAG LGINL
Sbjct: 1218 --------IHKRYL-YERIDGRVRGNLRQAAIDRFSKPDSDRF-VFLLCTRAGGLGINLT 1267
Query: 1218 SANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAA 1277
+A+ II D WNP DLQA R R GQ K V YRL+ + E +++ R K GL
Sbjct: 1268 AADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDK 1327
Query: 1278 RVVDRQQVHRT-ISKEEMLHLFEFGDDENPDPLTAVSKENGQGS 1320
V+ + +S + L E D A+ +E +GS
Sbjct: 1328 AVLQSMSGRDSNVSGIQQLSKKEIEDLLRRGAYGAIMEEEDEGS 1371
Score = 226 (84.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 81/304 (26%), Positives = 143/304 (47%)
Query: 755 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTA-LIVTPVNVLHNWKQEFMKWRPSELKP 813
CILA MGLGKT Q I FLY + + G+R LI+ P++ + NW++EF W +++
Sbjct: 880 CILADEMGLGKTIQSITFLYEILLT---GIRGPFLIIAPLSTIANWEREFRTW--TDINV 934
Query: 814 LRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ-- 871
+ V+ +SR + +R G + G A+R F + M C L
Sbjct: 935 V-VYHGSLISRQMIQQYEMYFRDSQGRIIRG--AYR---FQAIITTFEMILGGCGELNAI 988
Query: 872 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFL 931
D +++ DEAH +KN + LK + + ++ LTG+PLQN + E + ++ F+
Sbjct: 989 DWRCVII-DEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRF 1047
Query: 932 GSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPK 991
S F F + T E V Q+ + + + ++R+ +V KK L PK
Sbjct: 1048 PSESTFMQEFGDL--------KTEEQV----QKLQAILKPM--MLRRLKEDVEKK-LAPK 1092
Query: 992 TVFVITVKLSPLQRRLYKRFLDLH-GFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQL 1050
+I V+L+ +Q++ Y+ L+ + F + + + L + NHP +++
Sbjct: 1093 EETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNV-PNLVNTMMELRKCCNHPYLIKG 1151
Query: 1051 TKDK 1054
++K
Sbjct: 1152 AEEK 1155
Score = 45 (20.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 1157 LPRPGKQGKLWKKGKDWYRLDGRTESSERQ 1186
L + + G K+G D L+G+ E +E Q
Sbjct: 2720 LSKTAESGAEEKRGNDSKELEGKKERTESQ 2749
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 245 (91.3 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 66/166 (39%), Positives = 87/166 (52%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK ++L +L G K LVFSQ LD++ Y + + RL
Sbjct: 581 SGKFLILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHL------------RNFIFSRL 628
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG SER+K + FN + V L+STRAG LGINL +A+ VII D WNP DLQ
Sbjct: 629 DGSMSYSEREKNIYSFNT--DPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQ 686
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282
A R R GQTKPV YRL+ T+++KI +R K L ++ +
Sbjct: 687 AQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHK 732
Score = 220 (82.5 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 78/264 (29%), Positives = 124/264 (46%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT-PVNVLHNWKQEFMKWRP 808
+ G+ ILA MGLGKT Q IA T + G+ +V P++ L NW EF ++ P
Sbjct: 222 ENGINGILADEMGLGKTVQCIA---TIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTP 278
Query: 809 SELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICH 868
E+ L L +R+ R +L+ + G I SF ++D+N A + C+
Sbjct: 279 -EIPTL----LYHGTREDRRKLVKNIHKRQGTLQIHPVVVT--SFEIAMRDQN-ALQHCY 330
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
L+ DE H IKN + + LK+ ++ LTG+PLQNNL E + +++F+
Sbjct: 331 W-----KYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLP 385
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRS----HILYEQLKGFVQRMDMNVV 984
F + F I + + T+ED+ I +R H+L++ L F+ R + V
Sbjct: 386 DVFDDLKSFESWFD--ITS---LSETAEDI-IAKEREQNVLHMLHQILTPFLLRRLKSDV 439
Query: 985 KKDLPPKTVFVITVKLSPLQRRLY 1008
++PPK V+ L Q Y
Sbjct: 440 ALEVPPKREVVVYAPLCNKQEIFY 463
Score = 197 (74.4 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
Identities = 52/117 (44%), Positives = 64/117 (54%)
Query: 1175 RLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYD 1234
RLDG SER+K + FN + V L+STRAG LGINL +A+ VII D WNP D
Sbjct: 627 RLDGSMSYSEREKNIYSFNT--DPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSD 684
Query: 1235 LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISK 1291
LQA R R GQTKPV YRL+ T+++KI +R K R + K
Sbjct: 685 LQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAK--------------RKLEK 727
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 268 (99.4 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 80/235 (34%), Positives = 117/235 (49%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK+ L +LT + G + L++SQ +DL+E Y+ +++K + RL
Sbjct: 1110 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYM-----------VYRK-HTYMRL 1157
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG ++ SER+ +V F + L+STRAG LGINL +A+ VI D WNPT D Q
Sbjct: 1158 DGSSKISERRDMVADFQT--RNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1215
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHR-TISKEEML 1295
A+ RA R GQTK V YRL+ GT+EE+I +R K + V+ T+ +E++
Sbjct: 1216 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVV 1275
Query: 1296 HLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGK 1350
L D+E L +E Q + TN + K K + L GK
Sbjct: 1276 SLL-LDDEELEKKLRLRQEEKRQ--QEETNRVKERKRKREKYAEKKKKEDELDGK 1327
Score = 218 (81.8 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 71/261 (27%), Positives = 125/261 (47%)
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
++G+ ILA MGLGKT Q IA L N+ LI++P + L+NW QEF ++ P
Sbjct: 543 EQGINGILADEMGLGKTVQSIALLAHLAERENIW-GPFLIISPASTLNNWHQEFTRFVPK 601
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMA-REICH 868
+V DR+ + W K L YT ++ F + + +++ +
Sbjct: 602 ----FKVLPYWGNPHDRKV-IRRFWSQKT---L--YT--QDAPFHVVITSYQLVVQDVKY 649
Query: 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928
+ +V DEA +K++ + + L Q +C+ R+ LTG+P+QN + E + ++ F+
Sbjct: 650 FQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 709
Query: 929 GFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDL 988
S EF F IE+ S ++ ++ R H++ LK F+ R V+ +L
Sbjct: 710 TLFDSHEEFNEWFSKDIESHAENKSAIDENQL--SRLHMI---LKPFMLRRIKKDVENEL 764
Query: 989 PPKTVFVITVKLSPLQRRLYK 1009
K ++ +L+ Q+ LY+
Sbjct: 765 SDKIEILMYCQLTSRQKLLYQ 785
Score = 127 (49.8 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 43/156 (27%), Positives = 73/156 (46%)
Query: 658 RQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGY-----IVNVVREKGEE 712
+ + LK+ + + S D S A++ + TG+ + N GE+
Sbjct: 457 KAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAANKSGTGFGESYSLANPSIRAGED 516
Query: 713 AVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF 772
+ P+ + KLK +Q+ G+ ++ N+ + +G+ ILA MGLGKT Q IA
Sbjct: 517 IPQ-PTIFNGKLKGYQLKGMNWL-ANLYE---------QGINGILADEMGLGKTVQSIAL 565
Query: 773 LYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRP 808
L N+ LI++P + L+NW QEF ++ P
Sbjct: 566 LAHLAERENIW-GPFLIISPASTLNNWHQEFTRFVP 600
Score = 51 (23.0 bits), Expect = 5.7e-17, Sum P(3) = 5.7e-17
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 963 QRSHILYEQLKGFVQRMDMNVVKKDLP 989
++ H+ EQL +++ +++VKK+LP
Sbjct: 273 KKKHLSIEQLNARRRKVWLSIVKKELP 299
Score = 47 (21.6 bits), Expect = 8.1e-18, Sum P(2) = 8.1e-18
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 644 LGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSV 679
L + K KI+IE Q + S Q ++ S LMN V
Sbjct: 783 LYQALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLV 818
Score = 38 (18.4 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 639 LDDAE--LGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIE 692
LDD+ L + I +++E L + +S S+++N+ +L+G L + + +
Sbjct: 55 LDDSNPLLPQSGDPLIQVKEEPPNSLLG-ETSGASTSEMLNTYSLNGVLQSESKFD 109
Score = 37 (18.1 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 1108 EHTYKELDYSGKM 1120
+HTY LD S K+
Sbjct: 1151 KHTYMRLDGSSKI 1163
Score = 37 (18.1 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 1074 NVVIGEKPRNMNDFLQGKNDDGFFQKD 1100
N+VI P N L DD F D
Sbjct: 1334 NLVIPFVPSADNSNLSADGDDSFISVD 1360
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 268 (99.4 bits), Expect = 3.4e-34, Sum P(4) = 3.4e-34
Identities = 71/192 (36%), Positives = 106/192 (55%)
Query: 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRL 1176
SGK++LL +L + G + L+FSQ LDL+E +L +G + R+
Sbjct: 1023 SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY------------EGYKYERI 1070
Query: 1177 DGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQ 1236
DG RQ+ ++RFN P ++ C L+STRAG LGINL +A+ VII D WNP D+Q
Sbjct: 1071 DGGITGGLRQEAIDRFNAPGAQQF-CFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1129
Query: 1237 AIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA-ARVVDRQQVHR---TISKE 1292
A RA R GQ K V YR + ++EE+I QV K + +V R + +++K+
Sbjct: 1130 AFSRAHRIGQNKKVMIYRFVTRASVEERI--TQVAKRKMMLTHLVVRPGLGSKSGSMTKQ 1187
Query: 1293 EMLHLFEFGDDE 1304
E+ + +FG +E
Sbjct: 1188 ELDDILKFGTEE 1199
Score = 204 (76.9 bits), Expect = 3.4e-34, Sum P(4) = 3.4e-34
Identities = 81/300 (27%), Positives = 137/300 (45%)
Query: 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSE 810
+G ILA MGLGKT Q I FLY+ + + L+ P++ + NW++EF W P
Sbjct: 717 QGTDTILADEMGLGKTVQTIVFLYSLYKEGH-SKGPYLVSAPLSTIINWEREFEMWAPDF 775
Query: 811 LKPLRVFMLEDVSRDRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869
E S R E + A + G + + F + + I A
Sbjct: 776 YVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELIT-IDQA 834
Query: 870 LQDGPD--ILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927
+ + LV DEAH +KN ++ + L K ++ LTG+PLQNNL E + +++F+
Sbjct: 835 ILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFL- 893
Query: 928 EGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD 987
+ F N + +E + + + ED +I ++ H L ++R+ +V K +
Sbjct: 894 -----TPERFNN-LEGFLE--EFADISKED-QI--KKLHDLLGP--HMLRRLKADVFK-N 939
Query: 988 LPPKTVFVITVKLSPLQRRLYKRFLDLHGFT--NDRVSNEKIRKSFFAGYQALAQIWNHP 1045
+P KT ++ V+LS +Q++ YK F+ F N + ++ S L + NHP
Sbjct: 940 MPAKTELIVRVELSQMQKKYYK-FILTRNFEALNSKGGGNQV--SLLNIMMDLKKCCNHP 996
Score = 63 (27.2 bits), Expect = 3.4e-34, Sum P(4) = 3.4e-34
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 523 KKMHVKDADCSEC----YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC 578
KK + D D E YC C + +++ C +C + C+ + +A E + SC
Sbjct: 328 KKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKA---PEGKWSC 384
Query: 579 WQC 581
C
Sbjct: 385 PHC 387
Score = 46 (21.3 bits), Expect = 4.4e-18, Sum P(4) = 4.4e-18
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 865 EICHALQDGPDILVCD 880
E C +DG ++L CD
Sbjct: 417 EFCRVCKDGGELLCCD 432
Score = 43 (20.2 bits), Expect = 3.3e-16, Sum P(3) = 3.3e-16
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 864 REICHALQDGPDILVCD 880
++ C Q G +I++CD
Sbjct: 343 QDYCEVCQQGGEIILCD 359
Score = 42 (19.8 bits), Expect = 3.4e-34, Sum P(4) = 3.4e-34
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 299 EKELALSEEQRKKF-RKVKEEDDANMD 324
+K+ L +++ KK RK K+ED+ + D
Sbjct: 98 KKKKKLKDKKEKKAKRKKKDEDEDDND 124
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 259 (96.2 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 120/412 (29%), Positives = 182/412 (44%)
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+ L
Sbjct: 515 GLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT-L 571
Query: 812 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 871
K L + ++ + R + +K+ + V + Y + S DR++ R + L
Sbjct: 572 KVLCYYGSQEERKQIRYNIHSKYE-EYNVIVTTYNCAISSS-----DDRSLFRRL--KL- 622
Query: 872 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 930
+ + DE HM+KN + Q L + R+ LTG+P+QNNL+E +++FV F
Sbjct: 623 ---NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 679
Query: 931 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 990
S+ E R F + ++ S E +I + + I K F+ R V K LPP
Sbjct: 680 SSSTSEIRRMFSSKTKSADE-QSIYEKERIAHAKQII-----KPFILRRVKEEVLKQLPP 733
Query: 991 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSN-EKIRKSFFAGYQALAQIWNHPGILQ 1049
K + +S Q +LY L L ++N EK + Q L ++ NHP + +
Sbjct: 734 KKDQIELCAMSEKQEQLY---LGLFNRLKKSINNIEKSTEMCNVMMQ-LRKMANHPLLHR 789
Query: 1050 LTKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDF------LQGKNDDGFFQKDWW 1102
+ + N +I E M DF Q ++ + F Q D
Sbjct: 790 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNF-QLDM- 847
Query: 1103 NDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 1154
DL+ LD SGK +L IL+ GD+ ++FSQ LD++E L
Sbjct: 848 -DLI-------LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 890
Score = 220 (82.5 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 63/154 (40%), Positives = 87/154 (56%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
LD SGK +L IL+ GD+ ++FSQ LD++E L Q + +
Sbjct: 851 LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKH-----HQHR-------Y 897
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 898 LRLDGKTQISERIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 1267
D QA R R GQTK V +L++ GT+EE + K
Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
Score = 127 (49.8 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 44/145 (30%), Positives = 67/145 (46%)
Query: 692 EVLGDAITGYIVNVVREKGEEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSG 749
E + + +T + + G + PS + S LK +Q VG+ W ++
Sbjct: 463 EDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLN--WLALVHK------- 513
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+
Sbjct: 514 -HGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT 570
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKW 834
LK L + ++ + R + +K+
Sbjct: 571 -LKVLCYYGSQEERKQIRYNIHSKY 594
Score = 45 (20.9 bits), Expect = 5.6e-34, Sum P(4) = 5.6e-34
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 445 IIIGSDEADVVKDECSTKLEDHSVSPENI 473
I + SD D+V CS+ +++ + + +
Sbjct: 90 IDLSSDSEDIVSPNCSSTVQEKKFNKDTV 118
Score = 38 (18.4 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 446 IIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLH 483
+I E D D S+ ED+S E + D LH
Sbjct: 354 VIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILH 391
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(4) = 5.6e-34
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 641 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 675
DAE G KRK++ E E + Q K +L
Sbjct: 199 DAEGGGPRKRKLSSSSEPYEEDEFNDDQSIKKKRL 233
Score = 37 (18.1 bits), Expect = 3.1e-11, Sum P(4) = 3.1e-11
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 843 IGYTAFRNLSFGKHVKDRNMAREICHALQD 872
+G + + S G+ V + +I H LQD
Sbjct: 366 VGSSLDEDYSSGEEVMEDGYKGKILHFLQD 395
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 259 (96.2 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 120/412 (29%), Positives = 182/412 (44%)
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+ L
Sbjct: 515 GLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT-L 571
Query: 812 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 871
K L + ++ + R + +K+ + V + Y + S DR++ R + L
Sbjct: 572 KVLCYYGSQEERKQIRYNIHSKYE-EYNVIVTTYNCAISSS-----DDRSLFRRL--KL- 622
Query: 872 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 930
+ + DE HM+KN + Q L + R+ LTG+P+QNNL+E +++FV F
Sbjct: 623 ---NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 679
Query: 931 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 990
S+ E R F + ++ S E +I + + I K F+ R V K LPP
Sbjct: 680 SSSTSEIRRMFSSKTKSADE-QSIYEKERIAHAKQII-----KPFILRRVKEEVLKQLPP 733
Query: 991 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSN-EKIRKSFFAGYQALAQIWNHPGILQ 1049
K + +S Q +LY L L ++N EK + Q L ++ NHP + +
Sbjct: 734 KKDQIELCAMSEKQEQLY---LGLFNRLKKSINNIEKSTEMCNVMMQ-LRKMANHPLLHR 789
Query: 1050 LTKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDF------LQGKNDDGFFQKDWW 1102
+ + N +I E M DF Q ++ + F Q D
Sbjct: 790 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNF-QLDM- 847
Query: 1103 NDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 1154
DL+ LD SGK +L IL+ GD+ ++FSQ LD++E L
Sbjct: 848 -DLI-------LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 890
Score = 220 (82.5 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 63/154 (40%), Positives = 87/154 (56%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
LD SGK +L IL+ GD+ ++FSQ LD++E L Q + +
Sbjct: 851 LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKH-----HQHR-------Y 897
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 898 LRLDGKTQISERIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 1267
D QA R R GQTK V +L++ GT+EE + K
Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
Score = 127 (49.8 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 44/145 (30%), Positives = 67/145 (46%)
Query: 692 EVLGDAITGYIVNVVREKGEEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSG 749
E + + +T + + G + PS + S LK +Q VG+ W ++
Sbjct: 463 EDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLN--WLALVHK------- 513
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+
Sbjct: 514 -HGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT 570
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKW 834
LK L + ++ + R + +K+
Sbjct: 571 -LKVLCYYGSQEERKQIRYNIHSKY 594
Score = 45 (20.9 bits), Expect = 5.6e-34, Sum P(4) = 5.6e-34
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 445 IIIGSDEADVVKDECSTKLEDHSVSPENI 473
I + SD D+V CS+ +++ + + +
Sbjct: 88 IDLSSDSEDIVSPNCSSTVQEKKFNKDTV 116
Score = 38 (18.4 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 446 IIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLH 483
+I E D D S+ ED+S E + D LH
Sbjct: 354 VIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILH 391
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(4) = 5.6e-34
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 641 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 675
DAE G KRK++ E E + Q K +L
Sbjct: 199 DAEGGGPRKRKLSSSSEPYEEDEFNDDQSIKKKRL 233
Score = 37 (18.1 bits), Expect = 3.1e-11, Sum P(4) = 3.1e-11
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 843 IGYTAFRNLSFGKHVKDRNMAREICHALQD 872
+G + + S G+ V + +I H LQD
Sbjct: 366 VGSSLDEDYSSGEEVMEDGYKGKILHFLQD 395
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 259 (96.2 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 120/412 (29%), Positives = 182/412 (44%)
Query: 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSEL 811
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+ L
Sbjct: 515 GLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT-L 571
Query: 812 KPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 871
K L + ++ + R + +K+ + V + Y + S DR++ R + L
Sbjct: 572 KVLCYYGSQEERKQIRYNIHSKYE-EYNVIVTTYNCAISSS-----DDRSLFRRL--KL- 622
Query: 872 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG-F 930
+ + DE HM+KN + Q L + R+ LTG+P+QNNL+E +++FV F
Sbjct: 623 ---NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 679
Query: 931 LGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPP 990
S+ E R F + ++ S E +I + + I K F+ R V K LPP
Sbjct: 680 SSSTSEIRRMFSSKTKSADE-QSIYEKERIAHAKQII-----KPFILRRVKEEVLKQLPP 733
Query: 991 KTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSN-EKIRKSFFAGYQALAQIWNHPGILQ 1049
K + +S Q +LY L L ++N EK + Q L ++ NHP + +
Sbjct: 734 KKDQIELCAMSEKQEQLY---LGLFNRLKKSINNIEKSTEMCNVMMQ-LRKMANHPLLHR 789
Query: 1050 LTKDKGYPSRXXXXXXXXXXNMDYNV-VIGEKPRNMNDF------LQGKNDDGFFQKDWW 1102
+ + N +I E M DF Q ++ + F Q D
Sbjct: 790 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNF-QLDM- 847
Query: 1103 NDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYL 1154
DL+ LD SGK +L IL+ GD+ ++FSQ LD++E L
Sbjct: 848 -DLI-------LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 890
Score = 220 (82.5 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 63/154 (40%), Positives = 87/154 (56%)
Query: 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDW 1173
LD SGK +L IL+ GD+ ++FSQ LD++E L Q + +
Sbjct: 851 LD-SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKH-----HQHR-------Y 897
Query: 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233
RLDG+T+ SER L++ FN ++ + L+ST+AG LGINL SAN VI+ D NP
Sbjct: 898 LRLDGKTQISERIHLIDEFNTDMD--IFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 1267
D QA R R GQTK V +L++ GT+EE + K
Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
Score = 127 (49.8 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 44/145 (30%), Positives = 67/145 (46%)
Query: 692 EVLGDAITGYIVNVVREKGEEAVRIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSG 749
E + + +T + + G + PS + S LK +Q VG+ W ++
Sbjct: 463 EDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLN--WLALVHK------- 513
Query: 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS 809
GL ILA MGLGKT Q IAFL + N G LIV P + + NW +E W P+
Sbjct: 514 -HGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPH--LIVVPASTIDNWLREVNLWCPT 570
Query: 810 ELKPLRVFMLEDVSRDRRAELLAKW 834
LK L + ++ + R + +K+
Sbjct: 571 -LKVLCYYGSQEERKQIRYNIHSKY 594
Score = 45 (20.9 bits), Expect = 5.6e-34, Sum P(4) = 5.6e-34
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 445 IIIGSDEADVVKDECSTKLEDHSVSPENI 473
I + SD D+V CS+ +++ + + +
Sbjct: 90 IDLSSDSEDIVSPNCSSTVQEKKFNKDTV 118
Score = 38 (18.4 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 446 IIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLH 483
+I E D D S+ ED+S E + D LH
Sbjct: 354 VIEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILH 391
Score = 37 (18.1 bits), Expect = 5.6e-34, Sum P(4) = 5.6e-34
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 641 DAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL 675
DAE G KRK++ E E + Q K +L
Sbjct: 199 DAEGGGPRKRKLSSSSEPYEEDEFNDDQSIKKKRL 233
Score = 37 (18.1 bits), Expect = 3.1e-11, Sum P(4) = 3.1e-11
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 843 IGYTAFRNLSFGKHVKDRNMAREICHALQD 872
+G + + S G+ V + +I H LQD
Sbjct: 366 VGSSLDEDYSSGEEVMEDGYKGKILHFLQD 395
WARNING: HSPs involving 315 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1360 1207 0.00098 123 3 11 22 0.41 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 565
No. of states in DFA: 637 (68 KB)
Total size of DFA: 571 KB (2256 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 109.07u 0.14s 109.21t Elapsed: 00:00:05
Total cpu time: 109.16u 0.14s 109.30t Elapsed: 00:00:05
Start: Mon May 20 21:18:57 2013 End: Mon May 20 21:19:02 2013
WARNINGS ISSUED: 2