Query 000672
Match_columns 1360
No_of_seqs 623 out of 2769
Neff 6.5
Searched_HMMs 46136
Date Mon Apr 1 21:45:57 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1015 Transcription regulato 100.0 3E-181 7E-186 1592.5 57.1 1205 10-1358 70-1353(1567)
2 KOG0387 Transcription-coupled 100.0 4.2E-95 9E-100 861.8 41.5 499 711-1305 193-704 (923)
3 KOG0385 Chromatin remodeling c 100.0 7.8E-89 1.7E-93 803.4 48.5 483 716-1304 159-648 (971)
4 KOG1016 Predicted DNA helicase 100.0 1.3E-86 2.9E-91 775.1 33.9 596 700-1302 231-892 (1387)
5 KOG0392 SNF2 family DNA-depend 100.0 6.9E-85 1.5E-89 795.6 43.9 521 700-1303 952-1500(1549)
6 KOG0389 SNF2 family DNA-depend 100.0 8.8E-81 1.9E-85 738.4 41.9 510 716-1283 390-912 (941)
7 KOG0384 Chromodomain-helicase 100.0 2.6E-81 5.5E-86 769.6 34.9 481 722-1304 369-862 (1373)
8 PLN03142 Probable chromatin-re 100.0 1E-79 2.3E-84 785.4 48.9 481 715-1303 161-645 (1033)
9 KOG0391 SNF2 family DNA-depend 100.0 5.2E-79 1.1E-83 733.0 38.4 541 711-1302 603-1431(1958)
10 KOG0390 DNA repair protein, SN 100.0 3.1E-78 6.6E-83 740.2 44.4 522 712-1308 227-757 (776)
11 KOG0388 SNF2 family DNA-depend 100.0 2.3E-76 5E-81 686.7 38.9 512 711-1283 555-1178(1185)
12 KOG0386 Chromatin remodeling c 100.0 8E-75 1.7E-79 701.1 30.9 499 704-1296 374-875 (1157)
13 KOG4439 RNA polymerase II tran 100.0 6.5E-71 1.4E-75 646.4 33.7 533 712-1300 314-901 (901)
14 KOG1002 Nucleotide excision re 100.0 2.4E-70 5.2E-75 618.9 33.0 544 712-1299 173-790 (791)
15 COG0553 HepA Superfamily II DN 100.0 3.4E-60 7.4E-65 620.1 38.0 504 718-1300 333-865 (866)
16 KOG1000 Chromatin remodeling p 100.0 1.8E-54 4E-59 492.0 31.2 430 716-1283 191-627 (689)
17 PRK04914 ATP-dependent helicas 100.0 1.3E-52 2.9E-57 535.5 32.6 453 720-1298 149-644 (956)
18 KOG1001 Helicase-like transcri 100.0 6.7E-51 1.5E-55 503.6 22.1 499 728-1282 135-673 (674)
19 KOG0383 Predicted helicase [Ge 100.0 1.1E-48 2.4E-53 476.8 13.0 389 716-1213 285-696 (696)
20 PF00176 SNF2_N: SNF2 family N 100.0 1.1E-38 2.4E-43 366.1 22.6 296 727-1048 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 1.3E-36 2.8E-41 377.7 35.6 354 720-1267 252-615 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 3.5E-31 7.6E-36 343.2 34.1 464 722-1280 14-500 (773)
23 KOG0298 DEAD box-containing he 100.0 4.6E-32 1E-36 337.3 17.7 278 752-1049 374-692 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 1.5E-27 3.3E-32 277.0 30.6 468 723-1283 15-505 (542)
25 COG1061 SSL2 DNA or RNA helica 99.9 2.6E-25 5.7E-30 269.7 32.7 369 718-1271 31-406 (442)
26 PHA02558 uvsW UvsW helicase; P 99.9 2.3E-25 5E-30 274.8 32.6 336 722-1258 113-454 (501)
27 KOG1123 RNA polymerase II tran 99.9 1.6E-23 3.5E-28 239.8 20.1 361 711-1265 290-659 (776)
28 KOG0354 DEAD-box like helicase 99.9 8.4E-22 1.8E-26 241.4 34.7 464 722-1284 61-553 (746)
29 PTZ00110 helicase; Provisional 99.9 9.9E-21 2.2E-25 235.6 30.6 125 1117-1259 360-484 (545)
30 TIGR00614 recQ_fam ATP-depende 99.9 4E-20 8.7E-25 227.0 33.0 105 1133-1253 225-329 (470)
31 PRK11192 ATP-dependent RNA hel 99.9 5E-20 1.1E-24 224.2 32.2 117 1118-1252 231-347 (434)
32 PLN00206 DEAD-box ATP-dependen 99.9 1.7E-20 3.7E-25 232.6 28.1 324 722-1259 142-475 (518)
33 PRK11776 ATP-dependent RNA hel 99.9 3.5E-20 7.7E-25 227.1 30.2 321 722-1259 25-349 (460)
34 PRK01297 ATP-dependent RNA hel 99.9 5.8E-20 1.3E-24 226.0 30.0 122 1117-1258 320-441 (475)
35 PRK10590 ATP-dependent RNA hel 99.9 5E-20 1.1E-24 225.4 28.9 115 1120-1252 233-347 (456)
36 PRK04837 ATP-dependent RNA hel 99.9 6.2E-20 1.3E-24 222.6 28.1 121 1118-1258 241-361 (423)
37 PRK04537 ATP-dependent RNA hel 99.9 1.8E-19 3.9E-24 225.3 30.5 121 1118-1258 243-363 (572)
38 PRK11448 hsdR type I restricti 99.8 8.7E-20 1.9E-24 239.8 28.2 115 1134-1256 698-815 (1123)
39 PRK11057 ATP-dependent DNA hel 99.8 5.6E-19 1.2E-23 222.8 33.2 104 1133-1252 235-338 (607)
40 TIGR01389 recQ ATP-dependent D 99.8 5.4E-19 1.2E-23 223.0 32.9 116 1119-1252 211-326 (591)
41 PTZ00424 helicase 45; Provisio 99.8 2.2E-19 4.7E-24 216.1 27.0 109 1134-1260 267-375 (401)
42 TIGR00643 recG ATP-dependent D 99.8 1.4E-18 3.1E-23 220.0 32.8 312 721-1252 233-561 (630)
43 PRK11634 ATP-dependent RNA hel 99.8 1.2E-18 2.6E-23 219.3 30.6 117 1118-1252 231-347 (629)
44 PRK10917 ATP-dependent DNA hel 99.8 3.8E-18 8.2E-23 217.6 31.5 310 721-1251 259-583 (681)
45 TIGR03817 DECH_helic helicase/ 99.8 8E-18 1.7E-22 215.7 32.8 349 722-1267 35-394 (742)
46 TIGR00580 mfd transcription-re 99.8 4.7E-18 1E-22 220.1 30.4 311 723-1258 451-769 (926)
47 PLN03137 ATP-dependent DNA hel 99.8 9.1E-18 2E-22 214.5 31.2 105 1134-1254 680-784 (1195)
48 PRK13767 ATP-dependent helicas 99.8 1.3E-17 2.8E-22 217.7 32.0 119 1126-1254 276-395 (876)
49 PRK10689 transcription-repair 99.8 2.4E-17 5.1E-22 217.7 31.2 107 1134-1256 809-916 (1147)
50 KOG0331 ATP-dependent RNA heli 99.8 2.7E-17 5.8E-22 197.1 27.0 118 1117-1250 323-441 (519)
51 KOG0330 ATP-dependent RNA heli 99.8 5.6E-17 1.2E-21 183.3 23.9 125 1118-1262 286-410 (476)
52 PRK02362 ski2-like helicase; P 99.7 2.2E-16 4.7E-21 203.9 29.3 335 722-1258 22-396 (737)
53 TIGR00348 hsdR type I site-spe 99.7 1.2E-15 2.7E-20 194.0 33.9 167 721-914 236-405 (667)
54 COG0513 SrmB Superfamily II DN 99.7 1.5E-15 3.2E-20 188.0 31.1 134 1118-1272 259-392 (513)
55 PRK01172 ski2-like helicase; P 99.7 7.2E-16 1.6E-20 197.6 28.6 121 1126-1251 228-370 (674)
56 TIGR01587 cas3_core CRISPR-ass 99.7 3.5E-15 7.6E-20 177.1 30.2 123 1119-1259 208-338 (358)
57 PRK00254 ski2-like helicase; P 99.7 1.8E-15 3.9E-20 195.0 29.7 153 722-911 22-179 (720)
58 TIGR03714 secA2 accessory Sec 99.7 1.2E-14 2.6E-19 182.4 29.8 116 1116-1250 406-530 (762)
59 TIGR02621 cas3_GSU0051 CRISPR- 99.7 2.5E-14 5.3E-19 181.2 30.9 118 1132-1267 270-402 (844)
60 COG4096 HsdR Type I site-speci 99.7 1.9E-15 4.2E-20 185.4 18.9 367 711-1256 153-545 (875)
61 COG1201 Lhr Lhr-like helicases 99.6 1.3E-14 2.9E-19 182.8 24.4 339 722-1270 21-371 (814)
62 KOG0328 Predicted ATP-dependen 99.6 1.9E-15 4.1E-20 164.5 13.1 124 1119-1262 253-376 (400)
63 COG1200 RecG RecG-like helicas 99.6 1.1E-13 2.3E-18 168.7 27.8 321 720-1251 259-585 (677)
64 PRK09200 preprotein translocas 99.6 9.8E-14 2.1E-18 175.8 28.7 117 1116-1250 410-534 (790)
65 KOG0350 DEAD-box ATP-dependent 99.6 4E-14 8.7E-19 164.4 22.8 389 720-1272 156-551 (620)
66 cd00079 HELICc Helicase superf 99.6 7.3E-15 1.6E-19 147.6 11.7 120 1118-1253 12-131 (131)
67 PF04851 ResIII: Type III rest 99.6 8.4E-15 1.8E-19 155.8 12.5 168 722-912 2-183 (184)
68 KOG0345 ATP-dependent RNA heli 99.6 2.9E-13 6.2E-18 156.7 25.5 122 1115-1252 238-359 (567)
69 PHA02653 RNA helicase NPH-II; 99.6 6.7E-13 1.4E-17 167.4 29.8 112 1133-1262 394-517 (675)
70 PRK09751 putative ATP-dependen 99.6 3.9E-13 8.5E-18 179.1 28.9 108 1133-1244 243-371 (1490)
71 KOG0342 ATP-dependent RNA heli 99.6 3.1E-13 6.6E-18 157.5 23.3 114 1117-1247 314-427 (543)
72 COG1205 Distinct helicase fami 99.6 5.6E-13 1.2E-17 172.3 28.1 348 723-1267 70-430 (851)
73 TIGR00963 secA preprotein tran 99.6 1.3E-13 2.8E-18 172.3 21.1 116 1117-1250 388-510 (745)
74 TIGR03158 cas3_cyano CRISPR-as 99.6 5.8E-13 1.2E-17 158.3 25.7 87 1133-1242 271-357 (357)
75 PRK12898 secA preprotein trans 99.6 1.7E-12 3.7E-17 161.6 30.7 130 1116-1268 455-592 (656)
76 KOG0333 U5 snRNP-like RNA heli 99.5 8.9E-13 1.9E-17 154.0 25.2 126 1114-1259 499-624 (673)
77 COG0514 RecQ Superfamily II DN 99.5 1.3E-12 2.8E-17 159.9 27.6 315 722-1262 16-340 (590)
78 KOG0343 RNA Helicase [RNA proc 99.5 1.1E-12 2.5E-17 153.6 24.9 138 1116-1272 297-434 (758)
79 COG4889 Predicted helicase [Ge 99.5 6.5E-13 1.4E-17 160.9 22.9 173 711-911 149-350 (1518)
80 KOG0335 ATP-dependent RNA heli 99.5 6.9E-13 1.5E-17 157.1 22.4 122 1117-1254 313-442 (482)
81 PRK09401 reverse gyrase; Revie 99.5 2.4E-12 5.3E-17 171.1 30.1 104 1118-1244 315-431 (1176)
82 KOG0348 ATP-dependent RNA heli 99.5 9.5E-13 2.1E-17 153.9 22.9 139 1118-1262 407-557 (708)
83 PRK05580 primosome assembly pr 99.5 9.1E-12 2E-16 159.1 33.7 104 1140-1257 432-549 (679)
84 COG1204 Superfamily II helicas 99.5 1.6E-12 3.5E-17 165.9 23.2 153 723-911 31-190 (766)
85 TIGR00595 priA primosomal prot 99.5 7.6E-12 1.6E-16 154.6 26.6 99 1146-1258 270-382 (505)
86 KOG4284 DEAD box protein [Tran 99.5 1.1E-12 2.3E-17 155.6 17.2 111 1119-1247 259-369 (980)
87 KOG0336 ATP-dependent RNA heli 99.5 2.7E-12 5.8E-17 145.8 19.4 116 1117-1249 449-564 (629)
88 KOG0340 ATP-dependent RNA heli 99.4 1.3E-11 2.8E-16 139.0 23.6 115 1117-1247 236-351 (442)
89 KOG0338 ATP-dependent RNA heli 99.4 7.1E-12 1.5E-16 146.0 20.3 111 1122-1250 416-527 (691)
90 smart00487 DEXDc DEAD-like hel 99.4 2.2E-12 4.7E-17 137.4 14.1 163 721-914 6-173 (201)
91 TIGR01970 DEAH_box_HrpB ATP-de 99.4 2.8E-11 6.1E-16 156.2 26.4 111 1134-1260 209-337 (819)
92 TIGR01054 rgy reverse gyrase. 99.4 4E-11 8.7E-16 159.9 28.5 88 1120-1229 315-409 (1171)
93 KOG0332 ATP-dependent RNA heli 99.4 1.5E-11 3.2E-16 139.1 20.3 125 1118-1262 316-447 (477)
94 KOG0344 ATP-dependent RNA heli 99.4 9.6E-12 2.1E-16 148.4 19.0 120 1117-1253 372-492 (593)
95 cd00046 DEXDc DEAD-like helica 99.4 3.9E-12 8.4E-17 127.5 13.2 139 754-911 2-144 (144)
96 PF00271 Helicase_C: Helicase 99.4 6.9E-13 1.5E-17 122.5 6.8 73 1169-1245 6-78 (78)
97 KOG0341 DEAD-box protein abstr 99.4 7.8E-12 1.7E-16 141.1 16.3 129 1117-1266 407-535 (610)
98 COG1197 Mfd Transcription-repa 99.4 2.4E-10 5.1E-15 146.7 31.5 315 722-1258 593-912 (1139)
99 PRK09694 helicase Cas3; Provis 99.4 1.4E-10 3E-15 149.9 28.8 109 1127-1247 553-665 (878)
100 KOG0347 RNA helicase [RNA proc 99.3 1.6E-11 3.4E-16 144.3 16.7 130 1134-1281 463-613 (731)
101 COG1202 Superfamily II helicas 99.3 7.6E-11 1.7E-15 139.1 20.6 108 1135-1259 441-553 (830)
102 PRK14701 reverse gyrase; Provi 99.3 4.9E-10 1.1E-14 152.5 31.3 103 1121-1247 320-446 (1638)
103 PRK13104 secA preprotein trans 99.3 6.7E-10 1.5E-14 141.2 30.0 120 1116-1253 426-583 (896)
104 PRK11664 ATP-dependent RNA hel 99.3 1.2E-10 2.6E-15 150.6 23.7 112 1134-1261 212-341 (812)
105 KOG0339 ATP-dependent RNA heli 99.3 3E-10 6.5E-15 132.4 23.5 127 1117-1262 452-578 (731)
106 PRK12906 secA preprotein trans 99.3 4.2E-10 9.2E-15 142.3 26.8 116 1117-1250 423-546 (796)
107 TIGR00631 uvrb excinuclease AB 99.3 8.8E-10 1.9E-14 139.7 29.0 134 1116-1268 424-564 (655)
108 smart00490 HELICc helicase sup 99.2 2E-11 4.2E-16 112.4 8.2 73 1169-1245 10-82 (82)
109 PRK12904 preprotein translocas 99.2 2.9E-09 6.3E-14 135.4 28.0 119 1117-1253 413-569 (830)
110 PRK13107 preprotein translocas 99.2 1.3E-08 2.7E-13 129.4 31.6 118 1116-1251 431-585 (908)
111 KOG0326 ATP-dependent RNA heli 99.1 9.7E-11 2.1E-15 130.0 9.6 120 1117-1256 307-426 (459)
112 COG4098 comFA Superfamily II D 99.1 3.1E-08 6.8E-13 111.9 28.6 119 1122-1256 293-413 (441)
113 KOG0952 DNA/RNA helicase MER3/ 99.1 1.5E-08 3.2E-13 127.2 28.3 161 749-930 123-299 (1230)
114 PRK12900 secA preprotein trans 99.1 4.2E-08 9E-13 125.3 32.5 115 1117-1249 581-703 (1025)
115 KOG0346 RNA helicase [RNA proc 99.1 1.5E-09 3.2E-14 125.4 17.5 115 1119-1250 254-403 (569)
116 TIGR01967 DEAH_box_HrpA ATP-de 99.1 7.5E-09 1.6E-13 137.3 26.3 111 1134-1262 279-407 (1283)
117 KOG0334 RNA helicase [RNA proc 99.1 3.8E-09 8.2E-14 133.6 22.2 123 1117-1258 597-719 (997)
118 cd00268 DEADc DEAD-box helicas 99.1 1.3E-09 2.7E-14 119.0 15.9 160 723-912 21-185 (203)
119 PRK05298 excinuclease ABC subu 99.1 6.2E-08 1.4E-12 123.7 32.4 125 1116-1259 428-557 (652)
120 PF00270 DEAD: DEAD/DEAH box h 99.1 1.4E-09 3E-14 114.6 14.6 161 726-918 2-168 (169)
121 PRK11131 ATP-dependent RNA hel 99.1 5.4E-09 1.2E-13 138.1 23.1 111 1133-1261 285-413 (1294)
122 COG1203 CRISPR-associated heli 99.0 2.7E-08 5.8E-13 128.7 25.8 131 1129-1276 435-569 (733)
123 KOG0351 ATP-dependent DNA heli 99.0 9.8E-09 2.1E-13 132.8 20.9 109 1133-1257 484-592 (941)
124 KOG0327 Translation initiation 99.0 1.3E-08 2.8E-13 116.9 16.9 120 1119-1260 252-371 (397)
125 PF13872 AAA_34: P-loop contai 98.9 1.3E-08 2.9E-13 115.6 15.4 256 715-1011 27-303 (303)
126 PRK12899 secA preprotein trans 98.9 4.8E-07 1E-11 115.6 29.9 117 1117-1252 551-676 (970)
127 KOG0337 ATP-dependent RNA heli 98.9 1.9E-08 4.1E-13 116.0 15.2 123 1117-1258 245-367 (529)
128 PRK12326 preprotein translocas 98.9 1.1E-06 2.4E-11 109.8 29.6 118 1117-1252 410-542 (764)
129 PF11496 HDA2-3: Class II hist 98.8 6.9E-08 1.5E-12 111.5 16.5 219 992-1270 4-256 (297)
130 COG0556 UvrB Helicase subunit 98.8 1.8E-06 3.9E-11 102.8 28.0 138 1118-1272 430-572 (663)
131 KOG1513 Nuclear helicase MOP-3 98.8 4.1E-07 8.9E-12 110.9 20.7 270 715-1014 256-540 (1300)
132 KOG0352 ATP-dependent DNA heli 98.7 1.3E-06 2.7E-11 101.0 21.4 102 1137-1254 258-359 (641)
133 KOG0951 RNA helicase BRR2, DEA 98.7 1.2E-06 2.7E-11 111.7 22.0 162 751-931 324-502 (1674)
134 PRK13103 secA preprotein trans 98.6 4.7E-06 1E-10 106.7 26.2 120 1116-1253 431-587 (913)
135 PRK12903 secA preprotein trans 98.6 9.9E-06 2.1E-10 102.8 25.9 120 1116-1253 408-535 (925)
136 TIGR01407 dinG_rel DnaQ family 98.6 1.1E-05 2.4E-10 106.7 27.3 93 1122-1229 661-756 (850)
137 COG0610 Type I site-specific r 98.5 1.2E-06 2.7E-11 115.8 15.8 173 723-916 244-418 (962)
138 TIGR00596 rad1 DNA repair prot 98.5 2E-06 4.3E-11 111.1 16.6 76 1205-1283 431-539 (814)
139 KOG0353 ATP-dependent DNA heli 98.4 9.5E-05 2.1E-09 84.4 26.8 121 1134-1270 317-491 (695)
140 COG4581 Superfamily II RNA hel 98.3 2.9E-05 6.4E-10 100.9 22.0 151 720-911 116-270 (1041)
141 COG1110 Reverse gyrase [DNA re 98.3 0.00045 9.9E-09 88.3 30.9 115 752-885 97-215 (1187)
142 TIGR00604 rad3 DNA repair heli 98.3 0.00023 5.1E-09 92.5 28.4 72 723-805 10-82 (705)
143 PRK15483 type III restriction- 98.2 1.7E-05 3.8E-10 102.7 16.0 185 752-946 59-277 (986)
144 COG1198 PriA Primosomal protei 98.1 9E-05 1.9E-09 94.5 20.5 109 1134-1258 482-604 (730)
145 KOG4299 PHD Zn-finger protein 98.1 6.9E-07 1.5E-11 108.2 1.3 49 535-587 254-305 (613)
146 KOG0947 Cytoplasmic exosomal R 98.1 0.0002 4.3E-09 90.4 21.7 145 722-911 296-444 (1248)
147 PRK12901 secA preprotein trans 98.1 0.00047 1E-08 89.3 25.4 117 1117-1251 611-735 (1112)
148 KOG0329 ATP-dependent RNA heli 98.1 4.1E-05 8.8E-10 83.8 13.3 45 1204-1248 302-346 (387)
149 CHL00122 secA preprotein trans 98.1 0.00056 1.2E-08 87.8 25.5 84 1117-1217 407-491 (870)
150 KOG0948 Nuclear exosomal RNA h 98.1 3.6E-05 7.7E-10 94.6 14.0 146 721-911 127-276 (1041)
151 KOG0349 Putative DEAD-box RNA 98.0 1.2E-05 2.7E-10 93.0 8.7 97 1134-1243 505-601 (725)
152 KOG0949 Predicted helicase, DE 98.0 0.00027 6E-09 89.3 20.4 157 750-924 524-682 (1330)
153 PF13871 Helicase_C_4: Helicas 98.0 2.1E-05 4.6E-10 89.6 8.9 93 1187-1283 52-152 (278)
154 KOG0922 DEAH-box RNA helicase 97.9 0.0018 3.8E-08 80.2 24.4 119 1135-1261 259-392 (674)
155 PRK12902 secA preprotein trans 97.8 0.0012 2.7E-08 84.7 22.5 84 1117-1217 422-506 (939)
156 PF07652 Flavi_DEAD: Flaviviru 97.8 9.8E-05 2.1E-09 76.1 10.3 130 751-912 3-137 (148)
157 KOG0926 DEAH-box RNA helicase 97.8 0.00045 9.8E-09 85.8 17.3 66 1189-1258 620-703 (1172)
158 COG1643 HrpA HrpA-like helicas 97.8 0.0017 3.6E-08 84.4 22.9 114 1134-1262 259-390 (845)
159 KOG0950 DNA polymerase theta/e 97.7 0.0024 5.1E-08 81.6 22.3 69 1173-1246 525-598 (1008)
160 COG0653 SecA Preprotein transl 97.7 0.0094 2E-07 76.6 26.7 113 1116-1246 411-534 (822)
161 PF02399 Herpes_ori_bp: Origin 97.6 0.0032 7E-08 80.3 21.4 107 1124-1253 272-384 (824)
162 KOG0920 ATP-dependent RNA heli 97.6 0.0055 1.2E-07 79.6 23.4 129 1119-1259 396-544 (924)
163 PF00628 PHD: PHD-finger; Int 97.6 1.5E-05 3.1E-10 68.0 -0.2 47 536-586 1-50 (51)
164 KOG1244 Predicted transcriptio 97.4 4E-05 8.7E-10 84.1 0.9 72 490-584 246-328 (336)
165 KOG0924 mRNA splicing factor A 97.4 0.014 2.9E-07 72.1 20.8 94 1169-1266 596-704 (1042)
166 KOG0953 Mitochondrial RNA heli 97.3 0.0011 2.4E-08 80.0 10.3 110 1132-1257 356-475 (700)
167 PF13086 AAA_11: AAA domain; P 97.2 0.0085 1.8E-07 66.1 16.4 69 723-805 1-75 (236)
168 smart00249 PHD PHD zinc finger 97.2 0.00028 6E-09 58.2 3.1 44 536-584 1-47 (47)
169 smart00489 DEXDc3 DEAD-like he 97.1 0.0049 1.1E-07 71.8 13.7 73 724-806 9-84 (289)
170 smart00488 DEXDc2 DEAD-like he 97.1 0.0049 1.1E-07 71.8 13.7 73 724-806 9-84 (289)
171 TIGR02562 cas3_yersinia CRISPR 97.1 0.25 5.4E-06 65.4 29.0 47 1199-1248 837-883 (1110)
172 PRK10536 hypothetical protein; 97.0 0.005 1.1E-07 69.8 12.1 151 724-915 60-216 (262)
173 TIGR03117 cas_csf4 CRISPR-asso 97.0 0.0052 1.1E-07 78.1 13.5 93 1134-1244 471-573 (636)
174 KOG1473 Nucleosome remodeling 96.9 0.00035 7.5E-09 89.0 1.7 51 529-585 339-389 (1414)
175 PF02562 PhoH: PhoH-like prote 96.8 0.0012 2.6E-08 72.7 4.4 151 724-916 5-160 (205)
176 PF12340 DUF3638: Protein of u 96.4 0.014 3.1E-07 65.0 10.0 151 722-888 22-187 (229)
177 COG3587 Restriction endonuclea 96.3 0.024 5.1E-07 72.1 12.1 155 750-911 72-242 (985)
178 KOG1803 DNA helicase [Replicat 96.3 0.032 6.9E-07 68.9 12.3 68 719-803 181-249 (649)
179 PF13401 AAA_22: AAA domain; P 96.1 0.024 5.1E-07 57.2 9.0 116 752-911 4-125 (131)
180 KOG4323 Polycomb-like PHD Zn-f 96.1 0.0032 7E-08 75.8 3.0 100 487-588 97-225 (464)
181 KOG0923 mRNA splicing factor A 96.0 0.12 2.6E-06 64.1 15.5 81 1170-1259 506-606 (902)
182 PF07517 SecA_DEAD: SecA DEAD- 96.0 0.066 1.4E-06 61.5 12.8 163 721-920 75-266 (266)
183 PF13604 AAA_30: AAA domain; P 95.9 0.1 2.2E-06 57.4 13.1 58 723-796 1-58 (196)
184 PRK07246 bifunctional ATP-depe 95.7 0.091 2E-06 69.6 13.7 91 1122-1231 635-728 (820)
185 KOG1802 RNA helicase nonsense 95.7 0.11 2.4E-06 64.5 13.0 68 722-806 409-477 (935)
186 PF13307 Helicase_C_2: Helicas 95.5 0.038 8.3E-07 59.1 7.7 83 1131-1229 6-92 (167)
187 PRK08074 bifunctional ATP-depe 95.3 0.12 2.6E-06 69.5 13.4 98 1121-1232 738-839 (928)
188 KOG4150 Predicted ATP-dependen 95.2 0.031 6.7E-07 67.6 6.4 124 1116-1247 507-630 (1034)
189 PRK14873 primosome assembly pr 95.2 0.14 3E-06 66.2 12.8 125 761-912 169-304 (665)
190 TIGR00376 DNA helicase, putati 95.1 0.3 6.5E-06 63.1 15.4 67 722-805 156-223 (637)
191 KOG1131 RNA polymerase II tran 94.9 0.31 6.8E-06 59.2 13.4 61 723-794 16-76 (755)
192 COG0553 HepA Superfamily II DN 94.8 0.046 1E-06 72.8 7.2 74 720-807 81-156 (866)
193 PF09848 DUF2075: Uncharacteri 94.5 0.2 4.2E-06 60.2 10.8 48 755-804 4-52 (352)
194 KOG1973 Chromatin remodeling p 94.4 0.015 3.2E-07 67.2 1.1 43 536-587 223-268 (274)
195 PRK10875 recD exonuclease V su 94.3 0.31 6.7E-06 62.5 12.5 149 724-915 153-305 (615)
196 PRK08074 bifunctional ATP-depe 94.2 0.23 5E-06 66.9 11.7 84 722-821 256-344 (928)
197 KOG1512 PHD Zn-finger protein 94.2 0.021 4.5E-07 63.6 1.5 42 536-585 316-362 (381)
198 KOG1805 DNA replication helica 94.0 0.61 1.3E-05 60.6 13.9 156 716-913 658-831 (1100)
199 TIGR01448 recD_rel helicase, p 94.0 0.36 7.9E-06 63.2 12.5 136 721-915 321-456 (720)
200 PRK04296 thymidine kinase; Pro 93.7 0.22 4.7E-06 54.5 8.4 34 755-792 5-38 (190)
201 TIGR01447 recD exodeoxyribonuc 93.7 0.46 1E-05 60.7 12.4 150 726-915 148-299 (586)
202 PRK12723 flagellar biosynthesi 93.3 1.6 3.4E-05 53.1 15.3 75 873-947 254-344 (388)
203 COG1199 DinG Rad3-related DNA 93.2 0.77 1.7E-05 59.7 13.6 102 1133-1252 478-612 (654)
204 KOG1132 Helicase of the DEAD s 93.0 0.45 9.8E-06 61.3 10.5 93 1133-1233 560-660 (945)
205 KOG0825 PHD Zn-finger protein 93.0 0.059 1.3E-06 67.2 2.7 46 536-587 217-266 (1134)
206 PRK11747 dinG ATP-dependent DN 92.5 0.62 1.4E-05 60.9 11.3 95 1120-1229 520-616 (697)
207 TIGR02881 spore_V_K stage V sp 92.4 1.6 3.4E-05 50.2 13.2 28 751-778 41-68 (261)
208 cd00009 AAA The AAA+ (ATPases 92.4 1.3 2.9E-05 44.2 11.3 26 751-776 18-43 (151)
209 KOG1473 Nucleosome remodeling 92.4 0.043 9.3E-07 71.0 0.4 58 536-597 430-492 (1414)
210 PRK07246 bifunctional ATP-depe 92.1 0.96 2.1E-05 60.2 12.4 69 722-805 244-314 (820)
211 COG1875 NYN ribonuclease and A 92.1 0.36 7.9E-06 56.9 7.4 37 875-913 353-389 (436)
212 smart00382 AAA ATPases associa 91.8 0.78 1.7E-05 45.3 8.7 44 752-799 2-45 (148)
213 KOG4299 PHD Zn-finger protein 91.5 0.083 1.8E-06 65.4 1.5 45 535-584 48-92 (613)
214 KOG0957 PHD finger protein [Ge 90.7 0.12 2.6E-06 61.7 1.8 48 536-585 546-596 (707)
215 PRK08116 hypothetical protein; 90.6 9.5 0.00021 44.2 17.1 47 752-802 114-160 (268)
216 COG5432 RAD18 RING-finger-cont 90.5 0.13 2.8E-06 57.8 1.7 50 530-590 22-71 (391)
217 CHL00181 cbbX CbbX; Provisiona 90.3 2 4.3E-05 50.2 11.4 46 751-796 58-103 (287)
218 TIGR02880 cbbX_cfxQ probable R 89.9 1.5 3.2E-05 51.1 9.9 41 751-791 57-97 (284)
219 KOG4443 Putative transcription 89.7 0.16 3.5E-06 63.0 1.7 71 491-584 36-115 (694)
220 KOG0925 mRNA splicing factor A 89.5 0.72 1.6E-05 55.8 6.8 54 870-927 156-217 (699)
221 TIGR03420 DnaA_homol_Hda DnaA 89.4 2.4 5.3E-05 47.0 10.8 28 750-777 36-63 (226)
222 PRK06526 transposase; Provisio 89.1 1.5 3.3E-05 50.3 9.0 29 751-779 97-125 (254)
223 PHA02533 17 large terminase pr 88.7 3.7 8.1E-05 52.0 12.9 55 722-792 58-112 (534)
224 cd01124 KaiC KaiC is a circadi 87.8 4.3 9.3E-05 43.5 11.1 48 755-806 2-49 (187)
225 PF13245 AAA_19: Part of AAA d 87.8 1.6 3.5E-05 40.6 6.6 46 753-798 11-56 (76)
226 KOG0989 Replication factor C, 87.2 1.6 3.6E-05 50.6 7.5 43 727-777 40-82 (346)
227 PRK05707 DNA polymerase III su 86.6 1.8 4E-05 51.5 7.9 47 723-779 3-49 (328)
228 TIGR03015 pepcterm_ATPase puta 86.6 15 0.00032 42.0 15.1 22 754-775 45-66 (269)
229 PRK11889 flhF flagellar biosyn 86.0 23 0.00051 43.3 16.6 76 873-948 320-410 (436)
230 COG5034 TNG2 Chromatin remodel 86.0 0.34 7.5E-06 54.0 1.3 46 531-585 218-268 (271)
231 COG3421 Uncharacterized protei 85.8 0.51 1.1E-05 58.4 2.7 41 759-802 4-45 (812)
232 PRK05703 flhF flagellar biosyn 85.5 11 0.00024 46.5 14.2 57 873-929 299-360 (424)
233 PF06745 KaiC: KaiC; InterPro 85.1 12 0.00026 41.7 13.2 52 751-806 18-70 (226)
234 PF06862 DUF1253: Protein of u 84.9 12 0.00025 46.3 13.7 127 1117-1258 280-414 (442)
235 PF10497 zf-4CXXC_R1: Zinc-fin 84.8 0.54 1.2E-05 46.6 2.0 48 538-586 22-69 (105)
236 TIGR02928 orc1/cdc6 family rep 84.7 17 0.00037 43.5 15.1 56 714-778 11-66 (365)
237 PRK14956 DNA polymerase III su 84.6 5.3 0.00011 49.8 10.7 26 752-777 40-65 (484)
238 PRK08769 DNA polymerase III su 84.5 4.2 9.1E-05 48.3 9.5 52 721-779 2-53 (319)
239 PF05876 Terminase_GpA: Phage 84.4 1.9 4.2E-05 54.9 7.1 174 716-923 9-191 (557)
240 PRK07003 DNA polymerase III su 84.1 9.8 0.00021 49.8 13.0 27 751-777 37-63 (830)
241 smart00492 HELICc3 helicase su 84.0 4.2 9.1E-05 42.5 8.3 52 1174-1229 26-79 (141)
242 TIGR02768 TraA_Ti Ti-type conj 83.8 6.3 0.00014 52.1 11.7 59 722-797 351-409 (744)
243 KOG0951 RNA helicase BRR2, DEA 83.7 4.4 9.4E-05 54.5 9.7 108 750-889 1157-1269(1674)
244 PRK14974 cell division protein 83.2 22 0.00048 42.6 14.8 48 752-803 140-191 (336)
245 PLN03025 replication factor C 83.2 7.1 0.00015 46.2 10.8 26 752-777 34-59 (319)
246 PTZ00112 origin recognition co 83.1 13 0.00028 49.3 13.4 54 715-777 752-806 (1164)
247 smart00491 HELICc2 helicase su 83.1 4 8.7E-05 42.7 7.7 54 1174-1229 23-80 (142)
248 cd04718 BAH_plant_2 BAH, or Br 82.7 0.58 1.3E-05 48.8 1.3 27 555-587 1-27 (148)
249 PRK09112 DNA polymerase III su 82.2 9.9 0.00022 45.8 11.5 29 750-778 43-71 (351)
250 PRK08727 hypothetical protein; 82.1 12 0.00027 42.2 11.7 26 753-778 42-67 (233)
251 PF00580 UvrD-helicase: UvrD/R 81.9 2.9 6.2E-05 48.4 6.8 66 724-805 1-67 (315)
252 PRK07994 DNA polymerase III su 81.8 9.7 0.00021 49.3 11.9 28 751-778 37-64 (647)
253 PRK07764 DNA polymerase III su 81.7 8.9 0.00019 51.2 11.8 28 751-778 36-63 (824)
254 PRK14087 dnaA chromosomal repl 81.2 13 0.00028 46.4 12.4 50 752-803 141-190 (450)
255 PRK08084 DNA replication initi 81.2 12 0.00025 42.4 11.1 26 752-777 45-70 (235)
256 PF13177 DNA_pol3_delta2: DNA 81.1 20 0.00043 38.2 12.3 32 750-781 17-48 (162)
257 PRK12402 replication factor C 81.0 7.8 0.00017 45.7 10.1 25 753-777 37-61 (337)
258 PRK00149 dnaA chromosomal repl 80.8 9.6 0.00021 47.4 11.2 27 752-778 148-174 (450)
259 KOG3612 PHD Zn-finger protein 80.5 0.59 1.3E-05 57.1 0.4 58 530-592 56-113 (588)
260 PRK13889 conjugal transfer rel 80.4 13 0.00028 50.5 12.7 132 723-919 346-478 (988)
261 KOG0954 PHD finger protein [Ge 80.4 0.88 1.9E-05 57.2 1.9 45 533-585 270-319 (893)
262 PRK08181 transposase; Validate 80.3 15 0.00034 42.5 11.8 29 751-779 105-133 (269)
263 PRK12323 DNA polymerase III su 80.1 9.4 0.0002 49.2 10.7 28 751-778 37-64 (700)
264 TIGR01837 PHA_granule_1 poly(h 80.1 8.9 0.00019 38.9 8.6 87 49-135 19-114 (118)
265 KOG1081 Transcription factor N 80.0 0.83 1.8E-05 56.7 1.5 61 530-590 85-163 (463)
266 PRK07993 DNA polymerase III su 79.8 4.4 9.4E-05 48.5 7.4 50 723-779 2-51 (334)
267 PF06733 DEAD_2: DEAD_2; Inte 79.8 1.6 3.5E-05 46.8 3.5 42 835-886 117-158 (174)
268 PRK14952 DNA polymerase III su 79.4 15 0.00033 47.2 12.4 27 752-778 35-61 (584)
269 PRK09111 DNA polymerase III su 79.2 10 0.00022 48.9 10.8 30 750-779 44-73 (598)
270 PF00265 TK: Thymidine kinase; 79.1 14 0.0003 40.2 10.3 34 756-793 5-38 (176)
271 TIGR00362 DnaA chromosomal rep 79.1 11 0.00025 46.0 11.0 28 752-779 136-163 (405)
272 PRK14949 DNA polymerase III su 79.1 14 0.0003 49.4 11.9 26 752-777 38-63 (944)
273 PF05970 PIF1: PIF1-like helic 79.0 9.3 0.0002 46.2 10.0 62 724-797 2-63 (364)
274 PRK07471 DNA polymerase III su 78.9 20 0.00044 43.4 12.7 31 750-780 39-69 (365)
275 KOG1245 Chromatin remodeling c 78.9 0.79 1.7E-05 63.5 0.9 54 529-588 1103-1159(1404)
276 PRK05986 cob(I)alamin adenolsy 78.7 12 0.00027 41.1 9.8 58 870-927 112-173 (191)
277 PF00448 SRP54: SRP54-type pro 78.7 9.1 0.0002 42.2 9.0 57 872-928 82-142 (196)
278 COG1199 DinG Rad3-related DNA 78.7 6 0.00013 51.5 8.8 71 722-805 14-85 (654)
279 cd01120 RecA-like_NTPases RecA 78.5 23 0.00049 36.3 11.6 33 756-792 3-35 (165)
280 PRK11054 helD DNA helicase IV; 78.5 5.9 0.00013 51.8 8.5 83 722-822 195-278 (684)
281 PRK06835 DNA replication prote 78.4 27 0.00059 41.8 13.4 29 751-779 182-210 (329)
282 PF05621 TniB: Bacterial TniB 78.2 24 0.00052 41.5 12.4 40 872-911 144-189 (302)
283 PRK14960 DNA polymerase III su 77.8 12 0.00025 48.5 10.6 27 751-777 36-62 (702)
284 KOG0955 PHD finger protein BR1 77.0 1.9 4.1E-05 57.7 3.5 49 532-588 217-270 (1051)
285 TIGR01075 uvrD DNA helicase II 76.9 6.1 0.00013 52.1 8.2 83 723-821 4-87 (715)
286 PHA02544 44 clamp loader, smal 76.2 14 0.00031 43.3 10.3 40 873-912 100-141 (316)
287 COG1484 DnaC DNA replication p 75.8 10 0.00022 43.5 8.7 50 751-804 104-153 (254)
288 PRK14958 DNA polymerase III su 75.8 17 0.00037 46.0 11.3 27 751-777 37-63 (509)
289 PRK14088 dnaA chromosomal repl 75.2 18 0.0004 44.9 11.2 26 753-778 131-156 (440)
290 COG5141 PHD zinc finger-contai 74.9 1.7 3.6E-05 52.4 2.0 84 480-563 200-335 (669)
291 PRK06893 DNA replication initi 74.6 22 0.00047 40.1 10.8 26 753-778 40-65 (229)
292 PRK12422 chromosomal replicati 74.6 17 0.00037 45.2 10.8 26 753-778 142-167 (445)
293 cd01122 GP4d_helicase GP4d_hel 74.6 46 0.00099 38.2 13.7 39 751-792 29-67 (271)
294 PRK14961 DNA polymerase III su 74.5 20 0.00043 43.3 11.1 26 752-777 38-63 (363)
295 PRK14962 DNA polymerase III su 74.3 18 0.00039 45.4 10.9 27 751-777 35-61 (472)
296 PRK06871 DNA polymerase III su 74.3 17 0.00037 43.3 10.2 49 724-779 3-51 (325)
297 COG0464 SpoVK ATPases of the A 73.9 18 0.00039 45.5 11.0 75 722-805 248-322 (494)
298 PRK11773 uvrD DNA-dependent he 73.7 9.7 0.00021 50.3 8.8 84 722-821 8-92 (721)
299 PRK06645 DNA polymerase III su 73.5 25 0.00055 44.5 11.9 29 750-778 41-69 (507)
300 cd01121 Sms Sms (bacterial rad 73.2 33 0.00072 41.7 12.5 48 752-803 82-129 (372)
301 TIGR01074 rep ATP-dependent DN 73.2 10 0.00023 49.5 8.9 82 724-821 2-85 (664)
302 PRK00411 cdc6 cell division co 72.5 50 0.0011 40.0 14.1 29 750-778 53-81 (394)
303 PRK14969 DNA polymerase III su 72.1 24 0.00051 45.0 11.3 27 751-777 37-63 (527)
304 cd00561 CobA_CobO_BtuR ATP:cor 71.7 35 0.00076 36.5 10.8 55 871-925 93-151 (159)
305 PRK14964 DNA polymerase III su 71.7 29 0.00063 43.7 11.8 28 750-777 33-60 (491)
306 PF01695 IstB_IS21: IstB-like 71.6 7.5 0.00016 42.2 5.9 43 750-796 45-87 (178)
307 TIGR00595 priA primosomal prot 71.6 21 0.00046 45.2 10.7 97 1114-1226 5-101 (505)
308 KOG0956 PHD finger protein AF1 71.6 1.4 3.1E-05 55.0 0.4 54 531-586 114-179 (900)
309 PRK10919 ATP-dependent DNA hel 71.4 11 0.00024 49.4 8.4 83 723-821 2-86 (672)
310 PRK14722 flhF flagellar biosyn 71.4 24 0.00051 42.9 10.6 27 751-777 136-162 (374)
311 PRK08451 DNA polymerase III su 71.1 21 0.00044 45.5 10.4 28 751-778 35-62 (535)
312 PRK14959 DNA polymerase III su 71.0 24 0.00052 45.6 11.0 26 752-777 38-63 (624)
313 TIGR03117 cas_csf4 CRISPR-asso 70.4 25 0.00054 45.6 11.0 68 728-807 2-70 (636)
314 KOG0957 PHD finger protein [Ge 70.0 5.7 0.00012 48.2 4.8 46 511-556 136-192 (707)
315 PF14835 zf-RING_6: zf-RING of 69.8 2.9 6.3E-05 37.6 1.8 38 537-586 10-48 (65)
316 PRK14955 DNA polymerase III su 69.6 31 0.00068 42.2 11.4 28 751-778 37-64 (397)
317 PLN03208 E3 ubiquitin-protein 69.6 2.2 4.7E-05 46.6 1.2 56 532-587 16-77 (193)
318 KOG2807 RNA polymerase II tran 69.5 2.9 6.4E-05 48.3 2.2 48 531-588 327-377 (378)
319 PRK10917 ATP-dependent DNA hel 69.1 21 0.00046 46.9 10.3 100 1114-1224 290-389 (681)
320 PRK14712 conjugal transfer nic 68.9 39 0.00084 48.1 13.0 149 719-924 831-980 (1623)
321 PRK13709 conjugal transfer nic 68.5 34 0.00073 49.3 12.4 70 716-797 960-1029(1747)
322 PF00004 AAA: ATPase family as 68.0 21 0.00046 35.4 8.0 21 756-776 2-22 (132)
323 PRK08691 DNA polymerase III su 67.7 58 0.0013 42.6 13.4 28 750-777 36-63 (709)
324 PRK14086 dnaA chromosomal repl 67.6 34 0.00073 44.1 11.2 46 753-800 315-360 (617)
325 PRK05580 primosome assembly pr 67.1 31 0.00066 45.4 11.1 97 1114-1226 170-266 (679)
326 COG0552 FtsY Signal recognitio 66.7 71 0.0015 38.1 12.7 127 752-917 139-275 (340)
327 PF03354 Terminase_1: Phage Te 66.6 41 0.0009 42.2 11.8 63 726-793 1-63 (477)
328 KOG0991 Replication factor C, 66.6 16 0.00034 41.2 7.0 28 750-777 46-73 (333)
329 PRK08533 flagellar accessory p 66.4 81 0.0018 35.6 13.1 45 751-799 23-71 (230)
330 PRK09183 transposase/IS protei 66.1 31 0.00068 39.7 9.8 27 751-777 101-127 (259)
331 PRK14957 DNA polymerase III su 66.0 44 0.00096 42.7 11.9 26 752-777 38-63 (546)
332 COG2256 MGS1 ATPase related to 66.0 34 0.00074 41.6 10.1 34 875-910 106-139 (436)
333 PHA03368 DNA packaging termina 65.9 24 0.00053 45.5 9.3 55 753-809 255-314 (738)
334 PRK13342 recombination factor 65.9 25 0.00054 43.3 9.5 24 751-774 35-58 (413)
335 PRK13826 Dtr system oriT relax 65.6 45 0.00097 45.9 12.4 138 722-924 380-518 (1102)
336 TIGR00708 cobA cob(I)alamin ad 65.4 42 0.0009 36.5 9.9 57 870-926 94-154 (173)
337 TIGR01242 26Sp45 26S proteasom 65.4 22 0.00047 43.0 8.7 26 750-775 154-179 (364)
338 TIGR03346 chaperone_ClpB ATP-d 65.4 39 0.00085 45.6 11.9 27 750-776 192-218 (852)
339 PRK06964 DNA polymerase III su 65.1 43 0.00094 40.3 11.0 47 724-779 2-48 (342)
340 PRK05642 DNA replication initi 65.1 38 0.00083 38.3 10.1 38 873-910 97-138 (234)
341 KOG0740 AAA+-type ATPase [Post 65.0 18 0.00039 44.4 7.8 49 750-805 184-232 (428)
342 PF13832 zf-HC5HC2H_2: PHD-zin 64.4 5.5 0.00012 39.5 2.8 32 533-564 54-88 (110)
343 TIGR03877 thermo_KaiC_1 KaiC d 64.4 57 0.0012 36.9 11.4 37 751-791 20-56 (237)
344 PRK07940 DNA polymerase III su 63.3 18 0.00039 44.3 7.5 28 751-778 35-62 (394)
345 TIGR03689 pup_AAA proteasome A 63.0 20 0.00043 45.3 7.9 26 751-776 215-240 (512)
346 PRK14963 DNA polymerase III su 62.8 63 0.0014 41.0 12.3 27 752-778 36-62 (504)
347 KOG1701 Focal adhesion adaptor 62.7 2.4 5.3E-05 50.7 -0.1 40 492-534 336-383 (468)
348 TIGR02760 TraI_TIGR conjugativ 62.6 52 0.0011 48.4 12.9 64 722-797 1018-1081(1960)
349 PRK06090 DNA polymerase III su 62.5 56 0.0012 38.9 11.2 50 723-779 3-52 (319)
350 TIGR01073 pcrA ATP-dependent D 62.4 20 0.00043 47.5 8.3 83 723-821 4-87 (726)
351 PF05496 RuvB_N: Holliday junc 62.1 15 0.00034 41.4 6.0 20 752-773 50-69 (233)
352 PRK00440 rfc replication facto 62.0 80 0.0017 36.8 12.5 24 753-776 39-62 (319)
353 KOG0298 DEAD box-containing he 61.8 3.8 8.3E-05 55.1 1.5 122 1134-1275 1221-1342(1394)
354 PRK10865 protein disaggregatio 61.8 30 0.00064 46.7 9.8 27 750-776 197-223 (857)
355 PRK06731 flhF flagellar biosyn 61.8 1.2E+02 0.0026 35.4 13.4 55 873-928 154-213 (270)
356 COG1435 Tdk Thymidine kinase [ 61.7 46 0.001 36.8 9.3 35 755-793 7-41 (201)
357 PF01197 Ribosomal_L31: Riboso 61.5 5.8 0.00013 36.4 2.2 45 488-532 11-57 (69)
358 PF13771 zf-HC5HC2H: PHD-like 61.4 6.5 0.00014 37.4 2.7 51 531-584 33-86 (90)
359 COG3972 Superfamily I DNA and 61.4 40 0.00087 41.8 9.6 39 873-914 295-334 (660)
360 TIGR00570 cdk7 CDK-activating 61.3 8.1 0.00018 45.3 3.8 52 551-611 25-90 (309)
361 TIGR00643 recG ATP-dependent D 61.3 33 0.00072 44.7 9.8 100 1114-1224 264-363 (630)
362 PRK14721 flhF flagellar biosyn 61.2 1.9E+02 0.0042 35.8 15.8 75 873-948 269-359 (420)
363 PTZ00454 26S protease regulato 60.8 28 0.00061 42.7 8.6 42 750-798 177-218 (398)
364 PRK14951 DNA polymerase III su 60.8 44 0.00096 43.3 10.6 27 752-778 38-64 (618)
365 PHA02929 N1R/p28-like protein; 60.8 4.3 9.3E-05 46.0 1.4 45 532-586 172-224 (238)
366 COG1702 PhoH Phosphate starvat 60.6 13 0.00027 44.3 5.2 39 875-915 245-283 (348)
367 PRK00771 signal recognition pa 60.4 80 0.0017 39.3 12.4 38 751-792 94-131 (437)
368 PRK13341 recombination factor 60.2 37 0.0008 44.9 9.9 25 750-774 50-74 (725)
369 PRK14948 DNA polymerase III su 60.0 67 0.0015 41.8 12.1 27 752-778 38-64 (620)
370 PF13481 AAA_25: AAA domain; P 59.5 73 0.0016 34.3 10.8 56 752-807 32-93 (193)
371 PHA03372 DNA packaging termina 59.4 28 0.0006 44.5 8.1 49 760-810 210-263 (668)
372 PRK08939 primosomal protein Dn 59.3 30 0.00064 41.0 8.2 45 751-799 155-199 (306)
373 COG3267 ExeA Type II secretory 59.2 89 0.0019 36.0 11.3 46 754-804 53-104 (269)
374 TIGR01243 CDC48 AAA family ATP 59.2 32 0.00069 45.7 9.3 43 750-799 485-527 (733)
375 PRK11823 DNA repair protein Ra 59.0 88 0.0019 39.1 12.6 50 752-805 80-129 (446)
376 PRK14953 DNA polymerase III su 59.0 76 0.0017 40.1 12.1 26 752-777 38-63 (486)
377 PRK08903 DnaA regulatory inact 58.9 58 0.0012 36.3 10.1 26 751-776 41-66 (227)
378 KOG4443 Putative transcription 58.7 3.2 7E-05 52.1 0.0 46 536-586 20-70 (694)
379 TIGR03752 conj_TIGR03752 integ 58.7 73 0.0016 39.6 11.3 95 35-135 42-141 (472)
380 PF12861 zf-Apc11: Anaphase-pr 58.6 5 0.00011 38.2 1.3 29 550-585 50-78 (85)
381 PF06564 YhjQ: YhjQ protein; 58.3 50 0.0011 37.8 9.4 32 762-797 12-45 (243)
382 PRK05563 DNA polymerase III su 58.2 67 0.0014 41.3 11.6 28 750-777 36-63 (559)
383 cd03115 SRP The signal recogni 58.0 1E+02 0.0022 32.7 11.4 24 755-778 3-26 (173)
384 PF13639 zf-RING_2: Ring finge 58.0 3.2 6.9E-05 34.2 -0.1 38 536-584 2-43 (44)
385 PHA02926 zinc finger-like prot 57.9 4 8.7E-05 45.2 0.6 50 534-587 170-228 (242)
386 PRK06067 flagellar accessory p 57.8 79 0.0017 35.5 11.0 51 751-805 24-74 (234)
387 PRK14965 DNA polymerase III su 57.4 69 0.0015 41.4 11.6 27 751-777 37-63 (576)
388 PRK07133 DNA polymerase III su 57.3 73 0.0016 42.0 11.7 28 751-778 39-66 (725)
389 COG5141 PHD zinc finger-contai 57.3 4.2 9E-05 49.2 0.6 49 531-587 190-243 (669)
390 PRK07952 DNA replication prote 57.3 39 0.00084 38.7 8.4 44 753-804 100-143 (244)
391 TIGR03345 VI_ClpV1 type VI sec 56.9 38 0.00082 45.7 9.4 118 728-911 192-325 (852)
392 PRK12727 flagellar biosynthesi 56.8 1.2E+02 0.0027 38.6 13.1 27 752-778 350-376 (559)
393 KOG0956 PHD finger protein AF1 56.3 5.1 0.00011 50.4 1.2 43 537-587 8-57 (900)
394 TIGR00678 holB DNA polymerase 56.0 41 0.00088 36.4 8.0 29 750-778 12-40 (188)
395 cd02037 MRP-like MRP (Multiple 55.7 67 0.0015 34.1 9.5 53 872-928 66-118 (169)
396 CHL00095 clpC Clp protease ATP 55.5 46 0.001 44.8 10.0 26 751-776 199-224 (821)
397 PF15446 zf-PHD-like: PHD/FYVE 55.3 7.5 0.00016 41.4 2.0 48 537-584 2-57 (175)
398 COG3973 Superfamily I DNA and 54.8 26 0.00056 44.4 6.8 70 719-803 208-279 (747)
399 KOG1002 Nucleotide excision re 54.6 4.3 9.3E-05 49.4 0.2 71 503-587 514-584 (791)
400 PRK04328 hypothetical protein; 54.5 1E+02 0.0022 35.2 11.3 36 752-791 23-58 (249)
401 PRK14950 DNA polymerase III su 54.5 76 0.0017 41.0 11.3 26 752-777 38-63 (585)
402 KOG3970 Predicted E3 ubiquitin 54.4 4.2 9E-05 44.6 0.0 82 510-594 20-112 (299)
403 COG0254 RpmE Ribosomal protein 54.3 7.7 0.00017 36.1 1.7 46 487-532 11-58 (75)
404 TIGR02688 conserved hypothetic 54.1 37 0.0008 41.9 7.8 25 751-775 208-232 (449)
405 cd00984 DnaB_C DnaB helicase C 54.0 1.4E+02 0.003 33.4 12.3 49 751-802 12-64 (242)
406 PF05278 PEARLI-4: Arabidopsis 53.7 84 0.0018 36.4 10.1 84 49-135 146-253 (269)
407 PF13173 AAA_14: AAA domain 53.6 28 0.00061 35.2 5.9 37 873-913 61-100 (128)
408 PRK14873 primosome assembly pr 53.5 56 0.0012 42.9 9.9 95 1116-1226 170-265 (665)
409 smart00184 RING Ring finger. E 53.4 4.2 9E-05 31.2 -0.1 30 537-566 1-30 (39)
410 cd00162 RING RING-finger (Real 53.3 5 0.00011 32.0 0.3 40 537-585 2-42 (45)
411 cd01125 repA Hexameric Replica 53.1 2.1E+02 0.0047 32.2 13.6 52 754-805 3-65 (239)
412 PF00308 Bac_DnaA: Bacterial d 53.0 1.2E+02 0.0026 34.0 11.3 37 873-909 97-137 (219)
413 PRK11034 clpA ATP-dependent Cl 52.9 64 0.0014 43.0 10.4 26 751-776 206-231 (758)
414 PRK06647 DNA polymerase III su 52.9 88 0.0019 40.3 11.4 29 750-778 36-64 (563)
415 KOG2231 Predicted E3 ubiquitin 52.8 5.2 0.00011 51.2 0.5 90 491-586 100-214 (669)
416 COG0630 VirB11 Type IV secreto 52.8 61 0.0013 38.5 9.3 55 863-924 207-261 (312)
417 PRK05973 replicative DNA helic 52.7 1.3E+02 0.0028 34.4 11.6 37 751-791 63-99 (237)
418 COG0593 DnaA ATPase involved i 52.5 57 0.0012 40.1 9.1 41 873-913 175-221 (408)
419 KOG0317 Predicted E3 ubiquitin 52.5 4.9 0.00011 46.1 0.2 40 536-585 241-280 (293)
420 KOG0978 E3 ubiquitin ligase in 52.4 3 6.4E-05 53.5 -1.7 43 536-587 645-687 (698)
421 CHL00176 ftsH cell division pr 52.4 83 0.0018 41.1 11.1 25 751-775 215-239 (638)
422 TIGR00580 mfd transcription-re 52.3 63 0.0014 44.0 10.4 100 1115-1225 481-580 (926)
423 COG1474 CDC6 Cdc6-related prot 51.0 97 0.0021 37.7 10.8 57 714-779 13-69 (366)
424 PF13923 zf-C3HC4_2: Zinc fing 50.4 4.2 9.1E-05 32.6 -0.6 38 537-584 1-39 (39)
425 KOG1512 PHD Zn-finger protein 50.4 5.3 0.00011 45.3 -0.0 40 542-584 275-314 (381)
426 PRK10416 signal recognition pa 50.0 2.8E+02 0.0061 33.1 14.3 35 753-791 115-149 (318)
427 KOG0442 Structure-specific end 49.5 5.3E+02 0.011 34.6 17.0 59 1219-1283 545-607 (892)
428 PRK08760 replicative DNA helic 49.3 1.8E+02 0.0039 36.7 13.1 53 751-806 228-280 (476)
429 COG0470 HolB ATPase involved i 49.2 51 0.0011 38.5 8.0 27 754-780 26-52 (325)
430 KOG0320 Predicted E3 ubiquitin 49.0 4.8 0.0001 43.1 -0.6 33 545-587 144-176 (187)
431 KOG1039 Predicted E3 ubiquitin 48.9 9.2 0.0002 45.7 1.7 53 532-587 159-219 (344)
432 PRK10867 signal recognition pa 48.9 1.4E+02 0.003 37.3 11.8 47 752-801 100-150 (433)
433 CHL00206 ycf2 Ycf2; Provisiona 48.8 58 0.0013 46.9 9.2 43 750-799 1628-1670(2281)
434 PRK14954 DNA polymerase III su 48.6 1.2E+02 0.0025 39.6 11.6 28 750-777 36-63 (620)
435 PF15227 zf-C3HC4_4: zinc fing 48.6 5.6 0.00012 32.7 -0.1 28 551-584 15-42 (42)
436 PTZ00396 Casein kinase II subu 48.5 8.4 0.00018 44.0 1.2 34 551-585 122-155 (251)
437 PRK12724 flagellar biosynthesi 48.4 2.7E+02 0.0058 34.7 13.9 75 872-947 298-391 (432)
438 PF11793 FANCL_C: FANCL C-term 48.4 5 0.00011 36.8 -0.4 51 536-586 4-63 (70)
439 PRK14723 flhF flagellar biosyn 48.4 2.1E+02 0.0045 38.2 13.8 74 873-947 263-355 (767)
440 KOG1734 Predicted RING-contain 48.3 6.8 0.00015 44.3 0.5 48 530-587 220-279 (328)
441 TIGR00416 sms DNA repair prote 48.2 1.4E+02 0.0031 37.4 12.0 51 751-805 93-143 (454)
442 TIGR02639 ClpA ATP-dependent C 48.2 90 0.002 41.5 10.8 27 751-777 202-228 (731)
443 TIGR01425 SRP54_euk signal rec 47.7 4.4E+02 0.0095 32.9 15.7 35 754-792 102-136 (429)
444 PF13831 PHD_2: PHD-finger; PD 47.5 7.5 0.00016 31.1 0.5 34 545-585 3-36 (36)
445 PRK07414 cob(I)yrinic acid a,c 46.9 61 0.0013 35.4 7.4 54 871-924 113-170 (178)
446 COG1198 PriA Primosomal protei 46.1 53 0.0012 43.3 8.0 84 1111-1209 222-305 (730)
447 COG0467 RAD55 RecA-superfamily 46.0 1.7E+02 0.0036 33.5 11.4 47 751-801 22-72 (260)
448 KOG0383 Predicted helicase [Ge 45.5 4.8 0.00011 51.9 -1.4 54 529-587 501-554 (696)
449 KOG0952 DNA/RNA helicase MER3/ 45.5 27 0.00058 46.8 5.1 116 750-888 941-1061(1230)
450 PF07227 DUF1423: Protein of u 45.2 24 0.00052 43.2 4.4 58 536-602 143-205 (446)
451 PRK07399 DNA polymerase III su 45.0 1.8E+02 0.0039 34.6 11.7 30 750-779 24-53 (314)
452 KOG3362 Predicted BBOX Zn-fing 44.7 8.1 0.00018 39.9 0.3 29 535-564 119-148 (156)
453 PRK12377 putative replication 44.6 92 0.002 35.8 8.8 45 752-800 101-145 (248)
454 TIGR01243 CDC48 AAA family ATP 44.3 70 0.0015 42.5 9.0 26 750-775 210-235 (733)
455 PRK06904 replicative DNA helic 44.2 2.4E+02 0.0053 35.5 13.2 51 751-804 220-270 (472)
456 cd01131 PilT Pilus retraction 44.1 1.5E+02 0.0033 32.5 10.3 22 755-776 4-25 (198)
457 PF02403 Seryl_tRNA_N: Seryl-t 44.0 1.6E+02 0.0034 29.1 9.3 81 56-143 26-107 (108)
458 PRK12726 flagellar biosynthesi 43.9 2.5E+02 0.0055 34.5 12.6 48 752-803 206-257 (407)
459 PF12678 zf-rbx1: RING-H2 zinc 43.8 8.2 0.00018 35.7 0.2 26 550-585 48-73 (73)
460 COG2888 Predicted Zn-ribbon RN 43.7 13 0.00028 32.9 1.4 49 490-553 9-57 (61)
461 PHA00350 putative assembly pro 43.2 47 0.001 40.7 6.5 15 875-889 83-97 (399)
462 PRK06305 DNA polymerase III su 43.1 1.3E+02 0.0029 37.6 10.6 28 751-778 38-65 (451)
463 TIGR00959 ffh signal recogniti 43.0 1.7E+02 0.0037 36.4 11.3 37 752-791 99-135 (428)
464 KOG2164 Predicted E3 ubiquitin 42.5 10 0.00022 46.8 0.7 47 534-585 186-232 (513)
465 PRK10689 transcription-repair 42.4 1.1E+02 0.0024 42.7 10.6 99 1115-1224 630-728 (1147)
466 PF02318 FYVE_2: FYVE-type zin 42.3 13 0.00028 37.7 1.3 42 536-586 56-102 (118)
467 TIGR02785 addA_Gpos recombinat 42.2 94 0.002 43.9 10.0 48 751-799 13-60 (1232)
468 COG3598 RepA RecA-family ATPas 42.2 1.1E+02 0.0024 36.4 8.8 26 751-776 88-113 (402)
469 COG1107 Archaea-specific RecJ- 41.9 17 0.00036 45.6 2.4 21 536-556 70-90 (715)
470 TIGR02760 TraI_TIGR conjugativ 41.8 2.2E+02 0.0048 42.2 13.8 60 723-798 429-488 (1960)
471 PF01443 Viral_helicase1: Vira 41.6 48 0.001 36.8 6.0 40 873-915 62-101 (234)
472 PRK08058 DNA polymerase III su 41.6 1.9E+02 0.0041 34.5 11.3 30 750-779 26-55 (329)
473 COG0003 ArsA Predicted ATPase 41.4 81 0.0018 37.7 8.0 29 762-794 12-42 (322)
474 COG4626 Phage terminase-like p 41.4 2E+02 0.0043 36.6 11.5 73 718-794 56-128 (546)
475 TIGR02640 gas_vesic_GvpN gas v 41.2 67 0.0014 37.0 7.2 24 751-774 20-43 (262)
476 PF07649 C1_3: C1-like domain; 40.9 15 0.00032 27.9 1.2 26 536-561 2-30 (30)
477 PF14446 Prok-RING_1: Prokaryo 40.6 18 0.00039 31.6 1.7 29 536-564 7-39 (54)
478 TIGR00599 rad18 DNA repair pro 40.5 9.9 0.00022 46.3 0.3 41 536-586 28-68 (397)
479 PHA03333 putative ATPase subun 40.4 2E+02 0.0042 37.9 11.4 36 755-793 190-225 (752)
480 COG1419 FlhF Flagellar GTP-bin 40.2 5.1E+02 0.011 32.0 14.3 56 873-929 281-341 (407)
481 TIGR01241 FtsH_fam ATP-depende 39.9 67 0.0014 40.6 7.5 26 750-775 86-111 (495)
482 PRK06995 flhF flagellar biosyn 39.7 7.2E+02 0.016 31.6 16.1 54 873-927 334-392 (484)
483 COG2255 RuvB Holliday junction 39.7 57 0.0012 38.1 6.0 23 751-775 51-73 (332)
484 KOG0738 AAA+-type ATPase [Post 39.6 26 0.00057 42.2 3.5 46 753-806 246-292 (491)
485 PRK05917 DNA polymerase III su 38.6 1.5E+02 0.0033 34.9 9.5 29 750-778 17-45 (290)
486 COG5222 Uncharacterized conser 38.5 18 0.00038 41.5 1.7 56 536-601 276-341 (427)
487 PRK04132 replication factor C 38.2 1.4E+02 0.003 40.2 10.1 40 873-914 630-672 (846)
488 COG5574 PEX10 RING-finger-cont 38.1 12 0.00026 42.6 0.3 45 535-587 216-260 (271)
489 PRK13729 conjugal transfer pil 38.0 96 0.0021 38.7 7.9 35 107-141 94-128 (475)
490 PRK14559 putative protein seri 37.9 17 0.00038 47.1 1.8 23 530-553 12-34 (645)
491 KOG0827 Predicted E3 ubiquitin 37.8 10 0.00022 45.0 -0.2 43 536-587 6-54 (465)
492 PRK09165 replicative DNA helic 37.8 3.5E+02 0.0075 34.4 13.2 52 752-803 217-279 (497)
493 TIGR02655 circ_KaiC circadian 37.6 2E+02 0.0043 36.3 11.1 51 751-805 262-312 (484)
494 PHA02542 41 41 helicase; Provi 37.5 2.9E+02 0.0062 34.9 12.3 36 753-792 191-226 (473)
495 PHA00012 I assembly protein 37.3 57 0.0012 38.9 5.7 25 756-780 5-29 (361)
496 PRK04023 DNA polymerase II lar 37.1 20 0.00044 47.6 2.3 44 492-554 628-671 (1121)
497 COG0143 MetG Methionyl-tRNA sy 37.1 16 0.00034 46.6 1.3 46 511-562 126-171 (558)
498 COG2109 BtuR ATP:corrinoid ade 36.7 5.3E+02 0.012 28.7 12.4 56 871-926 120-179 (198)
499 KOG1952 Transcription factor N 36.5 8.7 0.00019 49.7 -1.1 56 528-586 185-244 (950)
500 PRK09302 circadian clock prote 36.3 1.9E+02 0.0041 36.7 10.7 50 752-805 273-322 (509)
No 1
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=3.3e-181 Score=1592.49 Aligned_cols=1205 Identities=32% Similarity=0.436 Sum_probs=1001.7
Q ss_pred cccccccccccCCCccccCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 000672 10 KHEEVEDIESDSGDSFIVDSESDEPSISGQDDGLHLEEHLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVRE 89 (1360)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1360)
+++..+++.+.+..+ ++.++.++.-+...+++..++.++..+++.+++..++.++++.
T Consensus 70 ~~~~~~~~~~~~~~t-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------- 127 (1567)
T KOG1015|consen 70 EQSFTSLEVRKVAET-KEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDETSEDDKKQS--------------------- 127 (1567)
T ss_pred hhhHHHHHHHhhhhc-cccchhhhhHhhhhhcccchhhhhhHhhhhcchhhhHHHHHHH---------------------
Confidence 344555555555554 7888888999999999999999999999999999888887753
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhccCCCchhHHHHHHhhCCCccchHhhhcccccccc
Q 000672 90 ELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGS 169 (1360)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (1360)
..||+.+|.+|+-+|++.++|+++||+.+++|++++|+|||-+|+.|++++|++|.||+|++++||+|+
T Consensus 128 -----------~~~~~~~~~~~~~~~~~~~~e~~~es~s~~~~~~~~~~e~~~~~~gik~~~~~~td~e~~~~~~~d~~~ 196 (1567)
T KOG1015|consen 128 -----------KKGTEEKKKPSDFKKKVIKMEQQYESSSDGTEKLPEREEICHFPKGIKQIKNGTTDGEKKSKKIRDKTS 196 (1567)
T ss_pred -----------hHhHHhhcCCchhHHHHHHHHHhhhcccchhhhccccccccchhhhhcccCCCCcchhhcccccccccc
Confidence 457889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhhHhhhhhcchhhhcccchhhcccccccchhccCCCCCCCCcccccccccchhhhccCCcccccccccc
Q 000672 170 QVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGS 249 (1360)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1360)
+++.+..||..+++-.+.+++|+++||||+++||++||++|++......+.....++.+|.+.|+-+.+++ ...-.||+
T Consensus 197 ~~~ve~sES~~~s~~~~esed~~~~r~~kn~~egrekk~~K~l~k~~~k~~~~~ssd~dk~sakk~~~~ss-dE~v~~~e 275 (1567)
T KOG1015|consen 197 KKKVELSESAEKSTGKGESEDSSEDRKSKNGAEGREKKRCKLLGKSSRKRQDCSSSDTDKYSAKKDGCNSS-DERVKRIE 275 (1567)
T ss_pred ceehhhhhhhhhccccccccCcchhhhhhhhhhhhhhHHHHHhccchhhhcccCCCchhhhhhhhcccccc-cccchhhh
Confidence 99999999999999999999999999999999999999999999876655566889999999999999988 88899999
Q ss_pred ccceeeeecCCHHHHHHccCCCCCCccccccccccCCCCChhHHHHhcchhhhcccHHHHHhhcccccchhhhhhHHHHH
Q 000672 250 KHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQL 329 (1360)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1360)
..|+++||||+|.++++||+.||||.|++|++|++...++||.+++|-+|+|..+.++|...|..+.||||...++-+|.
T Consensus 276 ~~pr~~llsS~ktkerasg~s~sd~~es~E~ed~kksk~s~~~k~vi~keKern~k~a~~ts~s~~eeeDde~es~~~~~ 355 (1567)
T KOG1015|consen 276 LRPRRNLLSSRKTKERASGSSSSDAEESSEDEDKKKSKTSSKKKAVIVKEKERNRKQADITSSSSSEEEDDEQESIGEGS 355 (1567)
T ss_pred hhhHhhhccCcchhhhhccCCcCCccccchhhhhhhhccchhhhhhhhHHHHhhhhhhhcccccccchhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHhhhhhcccccccccccccccccccccccccccccccCCCCCCCCCCCCCchhhhhhcccccccccccccccCCCC
Q 000672 330 HLKRRRHRKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGI 409 (1360)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (1360)
+|+++++.++.+|+.++++ .++.++++..+- -.|..| -. +.....+++
T Consensus 356 ~lkkk~kqk~~kq~sskss-ees~dd~~~r~~---------------kk~t~n--------~a--------Ka~~ss~eT 403 (1567)
T KOG1015|consen 356 SLKKKIKQKSGKQASSKSS-EESVDDPENRIA---------------KKMTLN--------EA--------KANLSSDET 403 (1567)
T ss_pred cchHhhhhccchhhhhhcc-hhccccHHHHhh---------------hhcchH--------HH--------HhhhcCCCc
Confidence 9999999999999999888 556666554420 000000 00 001112222
Q ss_pred cccCCCCCCCchhhhcccccCCCCCCCcccccceEEEecCCCcccccccccccccCCCCCccccccccccccccccCCCC
Q 000672 410 SSVSDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSE 489 (1360)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1360)
+.. -|+.| +++|++....+..+..+.+.+-+ +++.. +...+.--.
T Consensus 404 s~~-----s~esE-~~sk~sgk~~es~~~~e~~s~~~-n~~s~----------------------------~dsk~~~k~ 448 (1567)
T KOG1015|consen 404 SSS-----SDESE-EGSKRSGKQNESNPGDEEASNQV-NSESD----------------------------SDSKESKKP 448 (1567)
T ss_pred ccc-----ccccc-cchhhhcccccCCCCcccccccc-ccccc----------------------------cccccccCc
Confidence 211 12222 34444433333333333322211 11110 001222334
Q ss_pred ceeeccCccccccccccccccccccCcchhhhhhcCcccCCCCCcccccccCCCCceeecCCcccccchhhhcccCCccc
Q 000672 490 KFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEAC 569 (1360)
Q Consensus 490 ~~~C~~Cg~~~~~~~~HP~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~ 569 (1360)
.+.|++|.+.....+.||..+++.|+.|..... ..-...++..+..|.||+..-.+.-|..|++.||..|...+.+...
T Consensus 449 ~~r~~~~~K~~vsd~e~peekkt~~k~ksR~~~-~~sSese~d~d~eee~~s~~~~~~e~~~~~k~~sa~e~~~esd~Ev 527 (1567)
T KOG1015|consen 449 RYRRLLRHKLTVSDGESPEEKKTKPKEKSRNRR-KVSSESEEDSDFEEEGVSEEVSESEDEQRPKTRSAKEAELESDQEV 527 (1567)
T ss_pred chhhhhhcchhhcccccchhhhcchhhhccchh-hhcccccccchhhcccccCccccchhhhcccccchHHHhhccchhh
Confidence 477999999989999999999999999875543 3344556667779999999999999999999999999999999998
Q ss_pred ccccccCCCceeecCCchhHHHHHHHHHhhhcCcccccCCCCCCCCCccccccccccccchhhhhhhhhhccccccHHHH
Q 000672 570 LSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEETK 649 (1360)
Q Consensus 570 ~~~~~~~~~W~C~~C~p~~l~~L~~~~~~~~~~~~~~~~~s~~~~d~sd~~~~~~~~~~~k~~k~ir~il~d~~l~e~tk 649 (1360)
++ ....-.|.|.+|++.+.+ .+..++.+..+.....++++.++++.+..|+...+|+|+||+||+||+|..|+.+|+
T Consensus 528 mp-qkkkr~~~~~~sds~~e~--kse~E~ee~ekK~~ek~~kk~esseSd~vn~~sksK~K~rKkiRkII~d~kL~keT~ 604 (1567)
T KOG1015|consen 528 MP-QKKKRRRIKVQSDSSSEN--KSESEEEEEEKKEEEKEEKKEESSESDNVNDDSKSKGKGRKKIRKIIKDDKLRKETQ 604 (1567)
T ss_pred hh-hhhhcCceeeecCCcccc--cccccHHHHHHHHHhhhhhcccccccCCcCccccccccchhHHHhhcchhhhchhHH
Confidence 88 444456999999999988 667777777665555544444444433467777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHHHhhhhhhcccccccCCCCCCccchhhcccccccchhhhhhccCCcccccCcchhhhchH
Q 000672 650 RKIAIEKERQERLKS---LQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKA 726 (1360)
Q Consensus 650 ~~~~~ek~r~~rl~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~i~~~~~~~~~~~v~vP~~l~~~Lrp 726 (1360)
.++++|++|++||+. +++.|+.+ .+.....++++.. ..+|+++..++..++++||.+|...|+|
T Consensus 605 ~a~k~EkeRrkRie~~~~rqK~~n~i-----~ied~s~~~e~it--------~~lVld~deet~e~~VqV~rslv~kLKp 671 (1567)
T KOG1015|consen 605 NALKEEKERRKRIEEERERQKLRNVI-----EIEDASPTKEPIT--------TKLVLDEDEETKEPLVQVHRSLVIKLKP 671 (1567)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcee-----eeccCCCCccccc--------eeEEecchhhhccchhhccHhHHhhcCc
Confidence 999999999999998 33333321 1222233333222 2788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHHHh
Q 000672 727 HQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 806 (1360)
Q Consensus 727 hQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~k~ 806 (1360)
||..||+|||+++++++.+. ..++|.||||||+||||||+|+|+|+++++.....+++++|||||.+++.||.+||.+|
T Consensus 672 HQv~GvqFMwd~~~eSlkr~-~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~EFekW 750 (1567)
T KOG1015|consen 672 HQVDGVQFMWDCCCESLKRT-KKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNEFEKW 750 (1567)
T ss_pred ccccchhHHHHHHHHHHHhh-cCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHHHHHh
Confidence 99999999999999999987 55789999999999999999999999999999989999999999999999999999999
Q ss_pred CCC--CCCCeEEEEecCcch-hHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHH-HhhhcCCCCEEEEeCC
Q 000672 807 RPS--ELKPLRVFMLEDVSR-DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREI-CHALQDGPDILVCDEA 882 (1360)
Q Consensus 807 ~p~--~~~~l~V~~~~g~~~-~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i-~~ll~~~fdlVIlDEA 882 (1360)
.++ ...++.|+.+...++ ..|...+..|+..++|+|++|++||++..+...+.......+ ..++.++||+||||||
T Consensus 751 m~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~ 830 (1567)
T KOG1015|consen 751 MEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEG 830 (1567)
T ss_pred cccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecch
Confidence 985 334788998888776 788899999999999999999999999999888877744444 4555669999999999
Q ss_pred cccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHHHHH
Q 000672 883 HMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMN 962 (1360)
Q Consensus 883 H~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~~~~~~~~ 962 (1360)
|.|||..|.+++|+..+++++||+|||||+|||+.|||||++|+.|++||+..+|+++|.|||.+|++.+++..++.+|+
T Consensus 831 HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk 910 (1567)
T KOG1015|consen 831 HILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMK 910 (1567)
T ss_pred hhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccc--cchHHHHhhHHHHHHHHHH
Q 000672 963 QRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDR--VSNEKIRKSFFAGYQALAQ 1040 (1360)
Q Consensus 963 ~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~--~~~~~~~~s~~~~l~~LRq 1040 (1360)
+|+|+|+.+|++||+|+++.++.++||||++|+|.|.||+.|..||.+|++ +...... ....+....+|..|+.|++
T Consensus 911 ~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~-h~~~~G~d~eg~~g~~arlf~dfqmlsr 989 (1567)
T KOG1015|consen 911 KRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD-HLTGVGNDSEGGRGAGARLFQDFQMLSR 989 (1567)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh-hccccCCccccccchhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 3332222 2233466789999999999
Q ss_pred HhcCcchhhhccccC----CCCCcc---c--cCCC----------------------Cccccccccccc------CCCcc
Q 000672 1041 IWNHPGILQLTKDKG----YPSRED---A--EDSS----------------------SDENMDYNVVIG------EKPRN 1083 (1360)
Q Consensus 1041 ic~hP~Ll~~~~~~~----~~~~e~---~--~d~~----------------------~de~~~~~~~~~------e~~~~ 1083 (1360)
||+||+.+++..... +....+ . ++++ .|+..+.....+ .+.+.
T Consensus 990 IwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk 1069 (1567)
T KOG1015|consen 990 IWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRK 1069 (1567)
T ss_pred HhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhh
Confidence 999999988654321 111111 1 1110 011122211111 11111
Q ss_pred chhhhc------------------CC----CCCccchhhhhhhhhhhccccccccChhHHHHHHHHHhhhcCCCeEEEEe
Q 000672 1084 MNDFLQ------------------GK----NDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFS 1141 (1360)
Q Consensus 1084 ~~d~~~------------------~~----~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFS 1141 (1360)
+..+.. .. ......+..||.+++....+..+..|+||.+|++||..+.+.|+|+||||
T Consensus 1070 ~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFS 1149 (1567)
T KOG1015|consen 1070 SRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFS 1149 (1567)
T ss_pred ccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEee
Confidence 111111 10 01122456799999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHhcCCCCCC-----------CcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccc
Q 000672 1142 QSIPTLDLIEFYLSKLPRPGK-----------QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAG 1210 (1360)
Q Consensus 1142 Qf~~tLdlLe~~L~~l~~~~~-----------~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAG 1210 (1360)
|+..+|++|+.+|....+.++ .|. |..|.+|++|||+++..+|++++++||++.|-+.++|||||+||
T Consensus 1150 QSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGk-W~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAG 1228 (1567)
T KOG1015|consen 1150 QSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGK-WLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAG 1228 (1567)
T ss_pred cccchhHHHHHHHHhhcccCccccccccccccccc-eecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccC
Confidence 999999999999998776654 444 99999999999999999999999999999999999999999999
Q ss_pred cccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 000672 1211 SLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTIS 1290 (1360)
Q Consensus 1211 geGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K~~La~~Vvd~~~~~r~ls 1290 (1360)
+.||||.+||||||||.+|||+++.|+|+||||+||+||||||||++.||||++||.||++|+.++.+|||.+|+.|||+
T Consensus 1229 sLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~Rhy~ 1308 (1567)
T KOG1015|consen 1229 SLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVERHYT 1308 (1567)
T ss_pred ccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCChhhhhhhhcCCCCCCccccccccCCCCCCCCcchHHHHHHhhhcCcccccc
Q 000672 1291 KEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRCAVN 1358 (1360)
Q Consensus 1291 ~~EL~eLf~~~~d~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1358 (1360)
..||.+||+|.|+... +- .. +.+| .+|+|+|+|++|+.| ...|+.
T Consensus 1309 ~neLteLy~fep~~dd-p~--------------sE----r~~~---~lpKdrllae~l~~~-q~~i~~ 1353 (1567)
T KOG1015|consen 1309 MNELTELYTFEPDLDD-PN--------------SE----RDTP---MLPKDRLLAELLQIH-QEHIVG 1353 (1567)
T ss_pred HhhhHHHhhcCCccCC-cc--------------cc----cccc---cCCchhHHHHHHHHH-HHHhhh
Confidence 9999999999986321 10 00 1222 256999999999998 665553
No 2
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.2e-95 Score=861.79 Aligned_cols=499 Identities=37% Similarity=0.619 Sum_probs=440.3
Q ss_pred CcccccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEE
Q 000672 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 790 (1360)
Q Consensus 711 ~~~v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV 790 (1360)
+..+.||..|...|+|||++||+|||+.+. .+.||||+||||||||+|+|+|+..+...+.. .+|+|||
T Consensus 193 ~~~~~vPg~I~~~Lf~yQreGV~WL~~L~~----------q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~-~~paLIV 261 (923)
T KOG0387|consen 193 EGGFKVPGFIWSKLFPYQREGVQWLWELYC----------QRAGGILGDEMGLGKTIQIISFLAALHHSGKL-TKPALIV 261 (923)
T ss_pred cccccccHHHHHHhhHHHHHHHHHHHHHHh----------ccCCCeecccccCccchhHHHHHHHHhhcccc-cCceEEE
Confidence 456899999999999999999999998764 47899999999999999999999999877543 3899999
Q ss_pred echhhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHH-----------HHHHHhhcCCEEEEcccccccccccccccc
Q 000672 791 TPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAE-----------LLAKWRAKGGVFLIGYTAFRNLSFGKHVKD 859 (1360)
Q Consensus 791 ~P~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~-----------~l~~~~~~~~VvItSY~~~r~l~~~~~~~~ 859 (1360)
||++++.||.+||++|+|. ++|+++|+.....|.. +.......++|+||||..|+...
T Consensus 262 CP~Tii~qW~~E~~~w~p~----~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~------- 330 (923)
T KOG0387|consen 262 CPATIIHQWMKEFQTWWPP----FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG------- 330 (923)
T ss_pred ccHHHHHHHHHHHHHhCcc----eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC-------
Confidence 9999999999999999997 8999998876532111 11112345679999999998532
Q ss_pred hhhHHHHHhhhcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHh
Q 000672 860 RNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 939 (1360)
Q Consensus 860 ~~~~~~i~~ll~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~ 939 (1360)
..++...|++||+||+|+|||++|+++.+++++++.+||+|||||||||+.|||+|++|+.||.||+...|.+
T Consensus 331 -------d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~ 403 (923)
T KOG0387|consen 331 -------DDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQ 403 (923)
T ss_pred -------cccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHh
Confidence 1234558999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhh-cCCCceEEEEEecCCHHHHHHHHHHHHhhccc
Q 000672 940 RFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK-DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFT 1018 (1360)
Q Consensus 940 ~f~~pi~~g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~-~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~ 1018 (1360)
.|..||..|.+.+++...+....+++..|+.+|+||++||++.++.. .||.|.++|++|.||+.|+.+|+.+++.....
T Consensus 404 ~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~ 483 (923)
T KOG0387|consen 404 NFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVN 483 (923)
T ss_pred hhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999998753221
Q ss_pred ccccchHHHHhhHHHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccch
Q 000672 1019 NDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQ 1098 (1360)
Q Consensus 1019 ~~~~~~~~~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~ 1098 (1360)
... ......+..+..||+|||||.++....+...
T Consensus 484 ~i~----ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~------------------------------------------ 517 (923)
T KOG0387|consen 484 KIL----NGKRNCLSGIDILRKICNHPDLLDRRDEDEK------------------------------------------ 517 (923)
T ss_pred HHH----cCCccceechHHHHhhcCCcccccCcccccc------------------------------------------
Confidence 100 1112467888999999999998853210000
Q ss_pred hhhhhhhhhhccc-cccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEec
Q 000672 1099 KDWWNDLLHEHTY-KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD 1177 (1360)
Q Consensus 1099 ~~~~~~ll~~~~~-~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLd 1177 (1360)
...++ ..+..|+|+.+|..+|..+...|+|||+|||...||++|+.+|.. .+|+.|+++|
T Consensus 518 --------~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~-----------~~~ysylRmD 578 (923)
T KOG0387|consen 518 --------QGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR-----------AKGYSYLRMD 578 (923)
T ss_pred --------cCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh-----------cCCceEEEec
Confidence 00001 234669999999999999999999999999999999999999984 2799999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEec
Q 000672 1178 GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 1257 (1360)
Q Consensus 1178 Gsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva 1257 (1360)
|.|+...|+.+|++||+ +..++|||++|+|||.|+|||+||+||||||.|||+.+.||..|+|||||+|.|.||||++
T Consensus 579 GtT~~~~R~~lVd~Fne--~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNE--DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred CCCccchhhHHHHhhcC--CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEec
Confidence 99999999999999998 5678899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccccccCCHHHHHHhhcCCCCCC
Q 000672 1258 HGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDEN 1305 (1360)
Q Consensus 1258 ~gTIEEkI~~rq~~K~~La~~Vvd~~~~~r~ls~~EL~eLf~~~~d~~ 1305 (1360)
.|||||+||.||+.|+.|.++++......|.|...+|.+||.+.+...
T Consensus 657 ~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl~~~G~ 704 (923)
T KOG0387|consen 657 AGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSLKDFGD 704 (923)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCCCCCCc
Confidence 999999999999999999999999999999999999999999998533
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=7.8e-89 Score=803.41 Aligned_cols=483 Identities=33% Similarity=0.503 Sum_probs=411.7
Q ss_pred cCcchh-hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh
Q 000672 716 IPSSIS-AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN 794 (1360)
Q Consensus 716 vP~~l~-~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s 794 (1360)
.|..+. +.|||||++|+.||+..+ ..+.+|||||+||||||+|+|+|+.++....+ -.+|+||+||.|
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~----------engingILaDEMGLGKTlQtIs~l~yl~~~~~-~~GPfLVi~P~S 227 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLY----------ENGINGILADEMGLGKTLQTISLLGYLKGRKG-IPGPFLVIAPKS 227 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHH----------hcCcccEeehhcccchHHHHHHHHHHHHHhcC-CCCCeEEEeeHh
Confidence 577777 999999999999998654 46789999999999999999999988765433 357999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHh--hcCCEEEEcccccccccccccccchhhHHHHHhhhcC
Q 000672 795 VLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR--AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 872 (1360)
Q Consensus 795 Ll~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~--~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~ 872 (1360)
++.||.+||.+|+|+ +.++.|+|... .|........ ...+|+||||++..+ ....+-..
T Consensus 228 tL~NW~~Ef~rf~P~----l~~~~~~Gdk~-eR~~~~r~~~~~~~fdV~iTsYEi~i~--------------dk~~lk~~ 288 (971)
T KOG0385|consen 228 TLDNWMNEFKRFTPS----LNVVVYHGDKE-ERAALRRDIMLPGRFDVCITSYEIAIK--------------DKSFLKKF 288 (971)
T ss_pred hHHHHHHHHHHhCCC----cceEEEeCCHH-HHHHHHHHhhccCCCceEeehHHHHHh--------------hHHHHhcC
Confidence 999999999999998 88999998764 4444444332 367999999998542 22233345
Q ss_pred CCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCC
Q 000672 873 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTN 952 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~ 952 (1360)
.|.++||||||+|||.+|.+++.++.+.+.+|++|||||+|||+.|||+||+||.|++|++...|..||......+.
T Consensus 289 ~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~--- 365 (971)
T KOG0385|consen 289 NWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGD--- 365 (971)
T ss_pred CceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976532221
Q ss_pred CChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHH
Q 000672 953 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF 1032 (1360)
Q Consensus 953 st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~ 1032 (1360)
. .....||..|+||++||.+.+|...||||.+..+++.||..|++.|+.++...-...... ..+....+.
T Consensus 366 -----~----e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~-~~~~k~kL~ 435 (971)
T KOG0385|consen 366 -----Q----ELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGE-GKGEKTKLQ 435 (971)
T ss_pred -----H----HHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccc-ccchhhHHH
Confidence 1 134568999999999999999999999999999999999999999999987533222221 111245788
Q ss_pred HHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcccc
Q 000672 1033 AGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYK 1112 (1360)
Q Consensus 1033 ~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~ 1112 (1360)
+.+++||++||||+|+..... +.+ + .....
T Consensus 436 NI~mQLRKccnHPYLF~g~eP-g~p--------------------------------------y-----------ttdeh 465 (971)
T KOG0385|consen 436 NIMMQLRKCCNHPYLFDGAEP-GPP--------------------------------------Y-----------TTDEH 465 (971)
T ss_pred HHHHHHHHhcCCccccCCCCC-CCC--------------------------------------C-----------CcchH
Confidence 999999999999999964211 110 0 00112
Q ss_pred ccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHH
Q 000672 1113 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERF 1192 (1360)
Q Consensus 1113 ~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~F 1192 (1360)
.+..|||+.+|.++|..+.+.|+|||||||++.+||+|++++.- +|+.|+||||+|+.++|...|+.|
T Consensus 466 Lv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~------------R~y~ycRiDGSt~~eeR~~aI~~f 533 (971)
T KOG0385|consen 466 LVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCML------------RGYEYCRLDGSTSHEEREDAIEAF 533 (971)
T ss_pred HHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHh------------cCceeEeecCCCCcHHHHHHHHhc
Confidence 34679999999999999999999999999999999999999974 799999999999999999999999
Q ss_pred hCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHH
Q 000672 1193 NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 1272 (1360)
Q Consensus 1193 n~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K 1272 (1360)
|.++ .+..|||+||+|||.||||++|++||+||.+|||..+.||++|+|||||+|+|.||||++++||||+|+.|...|
T Consensus 534 n~~~-s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~K 612 (971)
T KOG0385|consen 534 NAPP-SEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAK 612 (971)
T ss_pred CCCC-cceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHH
Confidence 9874 457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc----cccccCCHHHHHHhhcCCCCC
Q 000672 1273 EGLAARVVDRQ----QVHRTISKEEMLHLFEFGDDE 1304 (1360)
Q Consensus 1273 ~~La~~Vvd~~----~~~r~ls~~EL~eLf~~~~d~ 1304 (1360)
.+|.+.||..+ +.....+.+++..+..++++.
T Consensus 613 L~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~ 648 (971)
T KOG0385|consen 613 LRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADP 648 (971)
T ss_pred hchhhhhhccCchhhhhccccchHHHHHHHHcCchh
Confidence 99999999887 333456789999998888653
No 4
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-86 Score=775.14 Aligned_cols=596 Identities=41% Similarity=0.708 Sum_probs=491.9
Q ss_pred cchhhhhhccCCcccccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 700 GYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 700 ~~i~~~~~~~~~~~v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
+.++|..+..+++.+.+-+.|...|+|||+-||+|||++++++++|++. +.|.||||||.||||||+|+|+|+-.+++.
T Consensus 231 rv~VN~~HPeeee~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykk-SsGFGCILAHSMGLGKTlQVisF~diflRh 309 (1387)
T KOG1016|consen 231 RVLVNAGHPEEEEDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKK-SSGFGCILAHSMGLGKTLQVISFSDIFLRH 309 (1387)
T ss_pred cEEEecCCCCCCcceeehhhhHhhcCccccCcEEEehhhHHHHHhhccc-cCCcceeeeeccccCceeEEeehhHHHhhc
Confidence 3455666677788889999999999999999999999999999999987 579999999999999999999999988887
Q ss_pred cccCCCceEEEechhhHHHHHHHHHHhCCCC-------CCCeEEEEecCcch--hHHHHHHHHHhhcCCEEEEccccccc
Q 000672 780 VNLGLRTALIVTPVNVLHNWKQEFMKWRPSE-------LKPLRVFMLEDVSR--DRRAELLAKWRAKGGVFLIGYTAFRN 850 (1360)
Q Consensus 780 ~~~~~k~~LIV~P~sLl~QW~~Ei~k~~p~~-------~~~l~V~~~~g~~~--~~r~~~l~~~~~~~~VvItSY~~~r~ 850 (1360)
.. .+++|+|+|.+++.||..||.+|+|.- ...+.|+++.+..+ ..|+..+..|...++|++++|++||.
T Consensus 310 T~--AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRL 387 (1387)
T KOG1016|consen 310 TK--AKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRL 387 (1387)
T ss_pred Cc--cceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHH
Confidence 54 579999999999999999999999862 23466787776544 57889999999999999999999997
Q ss_pred cccccc-----------------ccc------hhhHHHH-HhhhcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEE
Q 000672 851 LSFGKH-----------------VKD------RNMAREI-CHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIA 906 (1360)
Q Consensus 851 l~~~~~-----------------~~~------~~~~~~i-~~ll~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~Rll 906 (1360)
+...+. +++ ..+...+ ..++..++|+|||||+|+|||..+.++.+++.|++++|++
T Consensus 388 L~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiV 467 (1387)
T KOG1016|consen 388 LILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIV 467 (1387)
T ss_pred HHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEE
Confidence 653311 000 1122222 3455679999999999999999999999999999999999
Q ss_pred EeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhh
Q 000672 907 LTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK 986 (1360)
Q Consensus 907 LTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~ 986 (1360)
|||-|+|||+.|||||++|++|++||+..+|.++|.+||.+|+..+++..++++|..|+|+|+.+|.+||+||+..++..
T Consensus 468 LTGYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~ 547 (1387)
T KOG1016|consen 468 LTGYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK 547 (1387)
T ss_pred EeccccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEecCCHHHHHHHHHHHH-hhcccccccchHHHHhhHHHHHHHHHHHhcCcchhhhccccCCCCCccc---
Q 000672 987 DLPPKTVFVITVKLSPLQRRLYKRFLD-LHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDA--- 1062 (1360)
Q Consensus 987 ~LP~k~e~vV~v~LS~~Q~~lYe~ll~-~~~~~~~~~~~~~~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~--- 1062 (1360)
.||.+.++++.+++|..|++||+.++. ...... ......-+.+.+|....+|||||..+....++.....++.
T Consensus 548 ~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~---~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~v 624 (1387)
T KOG1016|consen 548 ILPEKKEYVILVRKSQIQRQLYRNFMLDAKREIA---ANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRV 624 (1387)
T ss_pred hcccccceEEEEeHHHHHHHHHHHHHHHHHHhhc---cccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhH
Confidence 999999999999999999999999873 211000 0111112567888899999999998875443211100000
Q ss_pred c---------------CCCCccccccccccc------CCCccchhhhc--CCCCCccchhhhhhhhhhhccccccccChh
Q 000672 1063 E---------------DSSSDENMDYNVVIG------EKPRNMNDFLQ--GKNDDGFFQKDWWNDLLHEHTYKELDYSGK 1119 (1360)
Q Consensus 1063 ~---------------d~~~de~~~~~~~~~------e~~~~~~d~~~--~~~~~~~~~~~~~~~ll~~~~~~~~~~S~K 1119 (1360)
+ ....+.........+ .+++....+.. ...........|..+++..+....+..++|
T Consensus 625 ee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk 704 (1387)
T KOG1016|consen 625 EEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPK 704 (1387)
T ss_pred HHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCc
Confidence 0 000000000000000 11111111100 011111233478888888888888899999
Q ss_pred HHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCC------CcccccCCCcEEEecCCCCHHHHHHHHHHHh
Q 000672 1120 MVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK------QGKLWKKGKDWYRLDGRTESSERQKLVERFN 1193 (1360)
Q Consensus 1120 l~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~------~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn 1193 (1360)
+..+++++.+....|+|+|||||....|++|+.+|.+...+.+ .+..|..++.|++++|.++...|+++|++||
T Consensus 705 ~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN 784 (1387)
T KOG1016|consen 705 IVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFN 784 (1387)
T ss_pred eEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhcc
Confidence 9999999999999999999999999999999999998665432 3356999999999999999999999999999
Q ss_pred CCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHHH
Q 000672 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKE 1273 (1360)
Q Consensus 1194 ~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K~ 1273 (1360)
...+-. +.||+||++|..||||.+||++|+||..|||.++.||+.|++|+||+|+++|||||+.+|+|.+||+||..|+
T Consensus 785 ~e~~ls-Wlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKq 863 (1387)
T KOG1016|consen 785 SEPGLS-WLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQ 863 (1387)
T ss_pred CCCCce-eeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhc
Confidence 976654 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccccCCHHHHHHhhcCCC
Q 000672 1274 GLAARVVDRQQVHRTISKEEMLHLFEFGD 1302 (1360)
Q Consensus 1274 ~La~~Vvd~~~~~r~ls~~EL~eLf~~~~ 1302 (1360)
.+.++|||+-+...+||..|+..|+.+.+
T Consensus 864 GmsdRvVDd~np~an~s~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 864 GMSDRVVDDANPDANISQKELENLLMYDE 892 (1387)
T ss_pred cchhhhhcccCccccccHHHHHHHhhhhh
Confidence 99999999999999999999999999977
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=6.9e-85 Score=795.55 Aligned_cols=521 Identities=31% Similarity=0.506 Sum_probs=436.7
Q ss_pred cchhhhhhccCCcccccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 700 GYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 700 ~~i~~~~~~~~~~~v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
+.+........-+.+.+|..|...||.||.+||.|+- + ++ ..+..|||||+||||||+|+|++++.-...
T Consensus 952 kFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLa--F---Ln-----ky~LHGILcDDMGLGKTLQticilAsd~y~ 1021 (1549)
T KOG0392|consen 952 KFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLA--F---LN-----KYKLHGILCDDMGLGKTLQTICILASDHYK 1021 (1549)
T ss_pred HHHHHhcCcccCCccccccchhHHHHHHHHhccHHHH--H---HH-----HhcccceeeccccccHHHHHHHHHHHHHHh
Confidence 4555556666778899999999999999999999983 2 33 346789999999999999999998765432
Q ss_pred c-----ccCCCceEEEechhhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEccccccccccc
Q 000672 780 V-----NLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFG 854 (1360)
Q Consensus 780 ~-----~~~~k~~LIV~P~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~ 854 (1360)
. .....|.|||||.+|..+|+.|+.+|+|. ++|..|-|....+ ... +...++++|+|++|+.+|+
T Consensus 1022 r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf~pf----L~v~~yvg~p~~r-~~l-R~q~~~~~iiVtSYDv~Rn---- 1091 (1549)
T KOG0392|consen 1022 RRSESSEFNRLPSLIVCPSTLTGHWKSEVKKFFPF----LKVLQYVGPPAER-REL-RDQYKNANIIVTSYDVVRN---- 1091 (1549)
T ss_pred hcccchhhccCCeEEECCchhhhHHHHHHHHhcch----hhhhhhcCChHHH-HHH-HhhccccceEEeeHHHHHH----
Confidence 2 11245899999999999999999999997 6777776654333 222 2234678999999999886
Q ss_pred ccccchhhHHHHHhhhcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCCh
Q 000672 855 KHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934 (1360)
Q Consensus 855 ~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~ 934 (1360)
....+....|.|+|+||+|-|||..++.+++++.|++.||++|||||||||+.|||+||+||+||++|+.
T Consensus 1092 ----------D~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtE 1161 (1549)
T KOG0392|consen 1092 ----------DVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTE 1161 (1549)
T ss_pred ----------HHHHHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcH
Confidence 2344556699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHh
Q 000672 935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL 1014 (1360)
Q Consensus 935 ~eF~~~f~~pi~~g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~ 1014 (1360)
+.|..+|.+||.......++..+.+.+..+...||+.+-||++||.+.+|.++||||+.+.++|+|+|.|+++|+.+...
T Consensus 1162 KqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~ 1241 (1549)
T KOG0392|consen 1162 KQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKK 1241 (1549)
T ss_pred HHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hccccc-----ccchHH-HHhhHHHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhh
Q 000672 1015 HGFTND-----RVSNEK-IRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFL 1088 (1360)
Q Consensus 1015 ~~~~~~-----~~~~~~-~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~ 1088 (1360)
...... .....+ ...++|++++.||++|+||.+.......... .
T Consensus 1242 ~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la----------------------------~-- 1291 (1549)
T KOG0392|consen 1242 AKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLA----------------------------A-- 1291 (1549)
T ss_pred hccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHH----------------------------H--
Confidence 211100 001111 1457999999999999999987532110000 0
Q ss_pred cCCCCCccchhhhhhhh-hhhccccccccChhHHHHHHHHHhhhc--------------CCCeEEEEeCchhhHHHHHHH
Q 000672 1089 QGKNDDGFFQKDWWNDL-LHEHTYKELDYSGKMVLLLDILTMCSN--------------MGDKSLVFSQSIPTLDLIEFY 1153 (1360)
Q Consensus 1089 ~~~~~~~~~~~~~~~~l-l~~~~~~~~~~S~Kl~~L~eiL~~~~~--------------~g~KVLIFSQf~~tLdlLe~~ 1153 (1360)
....+ ........+..|||+.+|.++|.+|-- .++|+|||||+.+++|+++.-
T Consensus 1292 ------------i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekD 1359 (1549)
T KOG0392|consen 1292 ------------IVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKD 1359 (1549)
T ss_pred ------------HHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHH
Confidence 00000 011123345789999999999998731 368999999999999999998
Q ss_pred HhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhH
Q 000672 1154 LSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTY 1233 (1360)
Q Consensus 1154 L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~ 1233 (1360)
|-+- ....+.|.|+||++++.+|++++++||+ ++.+.|+|++|.+||.|||||+|++|||++.+|||.+
T Consensus 1360 L~k~---------~mpsVtymRLDGSVpp~~R~kiV~~FN~--DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMr 1428 (1549)
T KOG0392|consen 1360 LFKK---------YMPSVTYMRLDGSVPPGDRQKIVERFNE--DPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1428 (1549)
T ss_pred Hhhh---------hcCceeEEEecCCCCcHHHHHHHHHhcC--CCceeEEEEeeeccccccccCCCceEEEEecCCCchh
Confidence 8752 2356789999999999999999999999 5678899999999999999999999999999999999
Q ss_pred HHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccccc-ccCCHHHHHHhhc-CCCC
Q 000672 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFE-FGDD 1303 (1360)
Q Consensus 1234 ~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K~~La~~Vvd~~~~~-r~ls~~EL~eLf~-~~~d 1303 (1360)
+.||++|||||||+|.|+|||||++||+||+|+.+|..|...++.||+.++.. ..+..++|.+||+ .+.|
T Consensus 1429 DLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~~~~gd 1500 (1549)
T KOG0392|consen 1429 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFTVLDGD 1500 (1549)
T ss_pred hHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhcccCCc
Confidence 99999999999999999999999999999999999999999999999988765 6899999999999 4433
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=8.8e-81 Score=738.45 Aligned_cols=510 Identities=33% Similarity=0.434 Sum_probs=392.4
Q ss_pred cCcchh--hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEech
Q 000672 716 IPSSIS--AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 793 (1360)
Q Consensus 716 vP~~l~--~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~ 793 (1360)
.|+.+. .+|+|||+.||.||+-.+ ..+-.||||||||||||+|+|||++++.+.+. .+|+|||||.
T Consensus 390 qp~~l~s~i~LkdYQlvGvNWL~Lly----------k~~l~gILADEMGLGKTiQvIaFlayLkq~g~--~gpHLVVvPs 457 (941)
T KOG0389|consen 390 QPKLLSSGIQLKDYQLVGVNWLLLLY----------KKKLNGILADEMGLGKTIQVIAFLAYLKQIGN--PGPHLVVVPS 457 (941)
T ss_pred CccccCCCCcccchhhhhHHHHHHHH----------HccccceehhhccCcchhHHHHHHHHHHHcCC--CCCcEEEecc
Confidence 455553 569999999999996432 45678899999999999999999999988877 4699999999
Q ss_pred hhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHH---HHHhhcCCEEEEcccccccccccccccchhhHHHHHhhh
Q 000672 794 NVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELL---AKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL 870 (1360)
Q Consensus 794 sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l---~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll 870 (1360)
|++.||.+||.+|||. ++|..|+|+... |.++. ..-...++|++|||..+..- ..++.+ +-
T Consensus 458 STleNWlrEf~kwCPs----l~Ve~YyGSq~E-R~~lR~~i~~~~~~ydVllTTY~la~~~-----kdDRsf------lk 521 (941)
T KOG0389|consen 458 STLENWLREFAKWCPS----LKVEPYYGSQDE-RRELRERIKKNKDDYDVLLTTYNLAASS-----KDDRSF------LK 521 (941)
T ss_pred hhHHHHHHHHHHhCCc----eEEEeccCcHHH-HHHHHHHHhccCCCccEEEEEeecccCC-----hHHHHH------HH
Confidence 9999999999999998 999999997643 33322 22234689999999987632 122222 23
Q ss_pred cCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCCh-HHHHhhccCCcccCC
Q 000672 871 QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS-HEFRNRFQNPIENGQ 949 (1360)
Q Consensus 871 ~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~-~eF~~~f~~pi~~g~ 949 (1360)
...|++||.||||.+||..|.+|+.+..+++.+|++|||||+|||+.||++||.|+.|++|.+. ..+...|..--.
T Consensus 522 ~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~--- 598 (941)
T KOG0389|consen 522 NQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKT--- 598 (941)
T ss_pred hccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCC---
Confidence 3489999999999999999999999999999999999999999999999999999999999765 455555543111
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHh
Q 000672 950 HTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRK 1029 (1360)
Q Consensus 950 ~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~ 1029 (1360)
.+...........|......+++|||+||.+.+|.++||||+.++.+|.|+..|+.+|..+++.............-..
T Consensus 599 -~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~ 677 (941)
T KOG0389|consen 599 -SDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELK 677 (941)
T ss_pred -ccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccc
Confidence 1223333344455677788899999999999999999999999999999999999999999887632222111111111
Q ss_pred hHHHHHHHHHHHhcCcchhhhccccCCC-CCc--cccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhh
Q 000672 1030 SFFAGYQALAQIWNHPGILQLTKDKGYP-SRE--DAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLL 1106 (1360)
Q Consensus 1030 s~~~~l~~LRqic~hP~Ll~~~~~~~~~-~~e--~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll 1106 (1360)
+ ...+++||++++||.|+...-..... ... ...+..-.. .......+....|.||.- ...+..+.
T Consensus 678 ~-~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~--~n~qyIfEDm~~msDfel---------HqLc~~f~ 745 (941)
T KOG0389|consen 678 S-GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKK--ANEQYIFEDMEVMSDFEL---------HQLCCQFR 745 (941)
T ss_pred c-chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhh--cCHHHHHHHHHhhhHHHH---------HHHHHhcC
Confidence 2 55789999999999988632110000 000 000000000 000001111112222210 01111111
Q ss_pred hhccc----cccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCH
Q 000672 1107 HEHTY----KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTES 1182 (1360)
Q Consensus 1107 ~~~~~----~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~ 1182 (1360)
....+ ..+-.|+|+..|..+|..+...|+||||||||+.|||+|+.+|.. .|+.|+|+||+|..
T Consensus 746 ~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~------------l~~~ylRLDGsTqV 813 (941)
T KOG0389|consen 746 HLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDT------------LGYKYLRLDGSTQV 813 (941)
T ss_pred CCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHh------------cCceEEeecCCccc
Confidence 11111 122359999999999999999999999999999999999999996 58999999999999
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHH
Q 000672 1183 SERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 1262 (1360)
Q Consensus 1183 ~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIE 1262 (1360)
..|+.+|+.||. +..++|||+||+|||.||||++||+||++|.++||..+.||.+|+||+||+|||+|||||+++|||
T Consensus 814 ~~RQ~lId~Fn~--d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 814 NDRQDLIDEFNT--DKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred hHHHHHHHhhcc--CCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 999999999998 567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 000672 1263 EKIYKRQVTKEGLAARVVDRQ 1283 (1360)
Q Consensus 1263 EkI~~rq~~K~~La~~Vvd~~ 1283 (1360)
|.|+.+...|..|-..+.+..
T Consensus 892 E~I~~lA~~KL~Le~~lt~~~ 912 (941)
T KOG0389|consen 892 EGILRLAKTKLALEADLTEDG 912 (941)
T ss_pred HHHHHHHHHhhhhhhhhccCc
Confidence 999999999999988887654
No 7
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.6e-81 Score=769.64 Aligned_cols=481 Identities=34% Similarity=0.501 Sum_probs=403.6
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 801 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~ 801 (1360)
..||+||++|+.||+-.+. .+.+||||||||||||+|+|+||.+++..... .+|+|||||.|++.+|+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~----------~~~n~ILADEmgLgktvqti~fl~~l~~~~~~-~gpflvvvplst~~~W~~ 437 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWY----------KRNNCILADEMGLGKTVQTITFLSYLFHSLQI-HGPFLVVVPLSTITAWER 437 (1373)
T ss_pred chhhhhhcccchhHHHHHH----------hcccceehhhcCCCcchHHHHHHHHHHHhhhc-cCCeEEEeehhhhHHHHH
Confidence 6899999999999987663 57899999999999999999999999887654 579999999999999999
Q ss_pred HHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHh--h-----cCCEEEEcccccccccccccccchhhHHHHHhhhcCCC
Q 000672 802 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR--A-----KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP 874 (1360)
Q Consensus 802 Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~--~-----~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~f 874 (1360)
||..|+ . +++++|+|....+.....-.|. . +++++||||+++.. +. ..+-...|
T Consensus 438 ef~~w~-~----mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk--------Dk------~~L~~i~w 498 (1373)
T KOG0384|consen 438 EFETWT-D----MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK--------DK------AELSKIPW 498 (1373)
T ss_pred HHHHHh-h----hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc--------cH------hhhccCCc
Confidence 999998 4 7888888865433222222221 1 46799999998642 22 22334489
Q ss_pred CEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCC
Q 000672 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST 954 (1360)
Q Consensus 875 dlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st 954 (1360)
.++++||||++||..|.++..+..++..+|+++||||+||++.|||+|++||+|+-|.+..+|...|..- +
T Consensus 499 ~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~---------~ 569 (1373)
T KOG0384|consen 499 RYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEE---------T 569 (1373)
T ss_pred ceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcch---------h
Confidence 9999999999999999999999999999999999999999999999999999999999999998877210 0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHH
Q 000672 955 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAG 1034 (1360)
Q Consensus 955 ~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~~~ 1034 (1360)
..-.+.|+..|+|||+||.+++|.+.||+|.++++.|.||+.|++.|+.++...-..... ...+...++++.
T Consensus 570 -------e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtK-G~~g~~~~lLNi 641 (1373)
T KOG0384|consen 570 -------EEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTK-GAKGSTPSLLNI 641 (1373)
T ss_pred -------HHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhc-cCCCCCchHHHH
Confidence 123456899999999999999999999999999999999999999999999753221111 111222579999
Q ss_pred HHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcccccc
Q 000672 1035 YQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKEL 1114 (1360)
Q Consensus 1035 l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 1114 (1360)
++.|+++||||+|+......... ++.. . . .....-..+
T Consensus 642 mmELkKccNHpyLi~gaee~~~~----------------------------~~~~-~----~---------~d~~L~~lI 679 (1373)
T KOG0384|consen 642 MMELKKCCNHPYLIKGAEEKILG----------------------------DFRD-K----M---------RDEALQALI 679 (1373)
T ss_pred HHHHHHhcCCccccCcHHHHHHH----------------------------hhhh-c----c---------hHHHHHHHH
Confidence 99999999999998644321110 0000 0 0 001112235
Q ss_pred ccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhC
Q 000672 1115 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1194 (1360)
Q Consensus 1115 ~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~ 1194 (1360)
..||||.+|.++|..+...|+|||||||++.|||+|++||.. ++++|-||||++..+-|+++|++||.
T Consensus 680 ~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~------------r~ypfQRLDGsvrgelRq~AIDhFna 747 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSL------------RGYPFQRLDGSVRGELRQQAIDHFNA 747 (1373)
T ss_pred HhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHH------------cCCcceeccCCcchHHHHHHHHhccC
Confidence 679999999999999999999999999999999999999996 79999999999999999999999999
Q ss_pred CCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHHHH
Q 000672 1195 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEG 1274 (1360)
Q Consensus 1195 ~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K~~ 1274 (1360)
+.+. -+|||+||+|||+||||++|++|||||.+|||..+.||+.|+|||||++.|.|||||++||+||-|++|+..|+.
T Consensus 748 p~Sd-dFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~Kmv 826 (1373)
T KOG0384|consen 748 PDSD-DFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMV 826 (1373)
T ss_pred CCCC-ceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhh
Confidence 8554 569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccc------ccccCCHHHHHHhhcCCCCC
Q 000672 1275 LAARVVDRQQ------VHRTISKEEMLHLFEFGDDE 1304 (1360)
Q Consensus 1275 La~~Vvd~~~------~~r~ls~~EL~eLf~~~~d~ 1304 (1360)
|-.+||.... -...|+.+||..|+.|+..+
T Consensus 827 LD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~ 862 (1373)
T KOG0384|consen 827 LDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYE 862 (1373)
T ss_pred hHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHH
Confidence 9999987543 24589999999999998753
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1e-79 Score=785.36 Aligned_cols=481 Identities=31% Similarity=0.460 Sum_probs=403.2
Q ss_pred ccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh
Q 000672 715 RIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN 794 (1360)
Q Consensus 715 ~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s 794 (1360)
..|..+..+|+|||++||+||+..+ ..+.||||||+||||||+|+|+++.++..... ..+|+|||||++
T Consensus 161 ~qP~~i~~~Lr~YQleGlnWLi~l~----------~~g~gGILADEMGLGKTlQaIalL~~L~~~~~-~~gp~LIVvP~S 229 (1033)
T PLN03142 161 VQPSCIKGKMRDYQLAGLNWLIRLY----------ENGINGILADEMGLGKTLQTISLLGYLHEYRG-ITGPHMVVAPKS 229 (1033)
T ss_pred cCChHhccchHHHHHHHHHHHHHHH----------hcCCCEEEEeCCCccHHHHHHHHHHHHHHhcC-CCCCEEEEeChH
Confidence 4688899999999999999998653 35789999999999999999999988765432 347999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHH--hhcCCEEEEcccccccccccccccchhhHHHHHhhhcC
Q 000672 795 VLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW--RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 872 (1360)
Q Consensus 795 Ll~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~--~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~ 872 (1360)
++.||.+||.+|+|. +.++.++|....+.. ....+ ...++|+||||+++.. ....+...
T Consensus 230 lL~nW~~Ei~kw~p~----l~v~~~~G~~~eR~~-~~~~~~~~~~~dVvITSYe~l~~--------------e~~~L~k~ 290 (1033)
T PLN03142 230 TLGNWMNEIRRFCPV----LRAVKFHGNPEERAH-QREELLVAGKFDVCVTSFEMAIK--------------EKTALKRF 290 (1033)
T ss_pred HHHHHHHHHHHHCCC----CceEEEeCCHHHHHH-HHHHHhcccCCCcceecHHHHHH--------------HHHHhccC
Confidence 999999999999987 778888876543322 22221 2457899999998753 12234455
Q ss_pred CCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCC
Q 000672 873 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTN 952 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~ 952 (1360)
.|++|||||||+|||..|+++++++.+++.+||+|||||++|++.|||+||+||.|+.|++...|..+|..+....
T Consensus 291 ~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~---- 366 (1033)
T PLN03142 291 SWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEND---- 366 (1033)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccc----
Confidence 8999999999999999999999999999999999999999999999999999999999999999999997632111
Q ss_pred CChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHH
Q 000672 953 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF 1032 (1360)
Q Consensus 953 st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~ 1032 (1360)
.......|+.++.||++||++.++...||++.+.+++|.||+.|+.+|+.++........ .......++
T Consensus 367 --------~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~---~g~~~~~Ll 435 (1033)
T PLN03142 367 --------QQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN---AGGERKRLL 435 (1033)
T ss_pred --------hHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh---ccccHHHHH
Confidence 112356789999999999999999999999999999999999999999998764321111 112234578
Q ss_pred HHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcccc
Q 000672 1033 AGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYK 1112 (1360)
Q Consensus 1033 ~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~ 1112 (1360)
..++.||++|+||+++....... .+.. ...
T Consensus 436 nilmqLRk~cnHP~L~~~~ep~~---------------------------------------~~~~-----------~e~ 465 (1033)
T PLN03142 436 NIAMQLRKCCNHPYLFQGAEPGP---------------------------------------PYTT-----------GEH 465 (1033)
T ss_pred HHHHHHHHHhCCHHhhhcccccC---------------------------------------cccc-----------hhH
Confidence 88999999999999874211000 0000 001
Q ss_pred ccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHH
Q 000672 1113 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERF 1192 (1360)
Q Consensus 1113 ~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~F 1192 (1360)
.+..|+|+.+|..+|..+...|+||||||||+.++++|+++|.. .|+.|++|+|+++..+|+.++++|
T Consensus 466 lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~------------~g~~y~rIdGsts~~eRq~~Id~F 533 (1033)
T PLN03142 466 LVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMY------------RGYQYCRIDGNTGGEDRDASIDAF 533 (1033)
T ss_pred HhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHH------------cCCcEEEECCCCCHHHHHHHHHHh
Confidence 23568999999999999999999999999999999999999985 689999999999999999999999
Q ss_pred hCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHH
Q 000672 1193 NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 1272 (1360)
Q Consensus 1193 n~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K 1272 (1360)
|.+.+ ...|||+||+|||+||||+.|++||+||++|||+.+.||+||+|||||+++|+||||++.|||||+|++++..|
T Consensus 534 n~~~s-~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~K 612 (1033)
T PLN03142 534 NKPGS-EKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 612 (1033)
T ss_pred ccccC-CceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHH
Confidence 97543 34589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccc--cccCCHHHHHHhhcCCCC
Q 000672 1273 EGLAARVVDRQQV--HRTISKEEMLHLFEFGDD 1303 (1360)
Q Consensus 1273 ~~La~~Vvd~~~~--~r~ls~~EL~eLf~~~~d 1303 (1360)
..+...|++.+.. ...++.++|.+||.++.+
T Consensus 613 l~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~ 645 (1033)
T PLN03142 613 LALDALVIQQGRLAEQKTVNKDELLQMVRYGAE 645 (1033)
T ss_pred HHHHHHHHhcCcccccccCCHHHHHHHHHhChH
Confidence 9999999987643 257899999999988764
No 9
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=5.2e-79 Score=733.05 Aligned_cols=541 Identities=30% Similarity=0.452 Sum_probs=423.0
Q ss_pred CcccccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEE
Q 000672 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 790 (1360)
Q Consensus 711 ~~~v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV 790 (1360)
...+.+|..|.+.||.||+.|+.||...+ .++.+||||||||||||+|+|+|++++... ...++|.|||
T Consensus 603 qVktpvPsLLrGqLReYQkiGLdWLatLY----------eknlNGILADEmGLGKTIQtISllAhLACe-egnWGPHLIV 671 (1958)
T KOG0391|consen 603 QVKTPVPSLLRGQLREYQKIGLDWLATLY----------EKNLNGILADEMGLGKTIQTISLLAHLACE-EGNWGPHLIV 671 (1958)
T ss_pred eeccCchHHHHHHHHHHHHhhHHHHHHHH----------HhcccceehhhhcccchhHHHHHHHHHHhc-ccCCCCceEE
Confidence 45678899999999999999999996543 467899999999999999999999887544 4468899999
Q ss_pred echhhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhc--CCEEEEcccccccccccccccchhhHHHHHh
Q 000672 791 TPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAK--GGVFLIGYTAFRNLSFGKHVKDRNMAREICH 868 (1360)
Q Consensus 791 ~P~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~--~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ 868 (1360)
||.+++.||.-||++|+|+ ++|..|.|..+. |....+.|... +.|.||+|..+. +.+..
T Consensus 672 VpTsviLnWEMElKRwcPg----lKILTYyGs~kE-rkeKRqgW~kPnaFHVCItSYklv~--------------qd~~A 732 (1958)
T KOG0391|consen 672 VPTSVILNWEMELKRWCPG----LKILTYYGSHKE-RKEKRQGWAKPNAFHVCITSYKLVF--------------QDLTA 732 (1958)
T ss_pred eechhhhhhhHHHhhhCCc----ceEeeecCCHHH-HHHHhhcccCCCeeEEeehhhHHHH--------------hHHHH
Confidence 9999999999999999998 899999997654 44455677543 579999998754 23334
Q ss_pred hhcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccC
Q 000672 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENG 948 (1360)
Q Consensus 869 ll~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g 948 (1360)
+-..+|.++|+||||+|||..|++++++.++++.+|++|||||+||++.|||+|++||+|..|.+...|+.||.+|+..-
T Consensus 733 FkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgm 812 (1958)
T KOG0391|consen 733 FKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGM 812 (1958)
T ss_pred HHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhh
Confidence 44559999999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHH
Q 000672 949 QHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIR 1028 (1360)
Q Consensus 949 ~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~ 1028 (1360)
-... ..........||+.|+||++||++.+|.+.||.|.+++|+|.||..|+.||+.++........ ...+..
T Consensus 813 iEgs-----qeyn~klV~RLHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKet--LkSGhf 885 (1958)
T KOG0391|consen 813 IEGS-----QEYNHKLVIRLHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKET--LKSGHF 885 (1958)
T ss_pred cccc-----hhhchHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhH--hhcCch
Confidence 2221 112234566799999999999999999999999999999999999999999999865432211 223334
Q ss_pred hhHHHHHHHHHHHhcCcchhhhccc--------cCCCCCcc-----c-----cC-CC--Ccc--ccccccc---------
Q 000672 1029 KSFFAGYQALAQIWNHPGILQLTKD--------KGYPSRED-----A-----ED-SS--SDE--NMDYNVV--------- 1076 (1360)
Q Consensus 1029 ~s~~~~l~~LRqic~hP~Ll~~~~~--------~~~~~~e~-----~-----~d-~~--~de--~~~~~~~--------- 1076 (1360)
.++++++++||++||||.|+...-. -.+....+ . .- .. +.. ......+
T Consensus 886 msVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sA 965 (1958)
T KOG0391|consen 886 MSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSA 965 (1958)
T ss_pred hHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcc
Confidence 4788999999999999999853211 00000000 0 00 00 000 0000000
Q ss_pred --------ccC---CCc----------------------c----------------------c---hhhhcCCC------
Q 000672 1077 --------IGE---KPR----------------------N----------------------M---NDFLQGKN------ 1092 (1360)
Q Consensus 1077 --------~~e---~~~----------------------~----------------------~---~d~~~~~~------ 1092 (1360)
... .+. . . ..++...+
T Consensus 966 spl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~ 1045 (1958)
T KOG0391|consen 966 SPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQ 1045 (1958)
T ss_pred cccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeee
Confidence 000 000 0 0 00000000
Q ss_pred ------------------------------------------------CC--ccc-----------hhhh----------
Q 000672 1093 ------------------------------------------------DD--GFF-----------QKDW---------- 1101 (1360)
Q Consensus 1093 ------------------------------------------------~~--~~~-----------~~~~---------- 1101 (1360)
++ .++ ...|
T Consensus 1046 htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~ 1125 (1958)
T KOG0391|consen 1046 HTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGG 1125 (1958)
T ss_pred eecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCcccccc
Confidence 00 000 0000
Q ss_pred ---------h----hhh------------------------------------------------hhhccc---------
Q 000672 1102 ---------W----NDL------------------------------------------------LHEHTY--------- 1111 (1360)
Q Consensus 1102 ---------~----~~l------------------------------------------------l~~~~~--------- 1111 (1360)
+ .++ +....+
T Consensus 1126 klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~p 1205 (1958)
T KOG0391|consen 1126 KLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAP 1205 (1958)
T ss_pred chhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCC
Confidence 0 000 000000
Q ss_pred -----------------------------------------------ccc-ccChhHHHHHHHHHhhhcCCCeEEEEeCc
Q 000672 1112 -----------------------------------------------KEL-DYSGKMVLLLDILTMCSNMGDKSLVFSQS 1143 (1360)
Q Consensus 1112 -----------------------------------------------~~~-~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf 1143 (1360)
..+ ..+||+..|.=+|+++...|++||||+|+
T Consensus 1206 pslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQM 1285 (1958)
T KOG0391|consen 1206 PSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQM 1285 (1958)
T ss_pred hhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHH
Confidence 000 11679999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEE
Q 000672 1144 IPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVI 1223 (1360)
Q Consensus 1144 ~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VI 1223 (1360)
+.|||+|+.||.. +|+-|+||||.++.++|+.++++||. +.+|+|||+||+.||+||||++|++||
T Consensus 1286 tkmLDVLeqFLny------------HgylY~RLDg~t~vEqRQaLmerFNa--D~RIfcfILSTrSggvGiNLtgADTVv 1351 (1958)
T KOG0391|consen 1286 TKMLDVLEQFLNY------------HGYLYVRLDGNTSVEQRQALMERFNA--DRRIFCFILSTRSGGVGINLTGADTVV 1351 (1958)
T ss_pred HHHHHHHHHHHhh------------cceEEEEecCCccHHHHHHHHHHhcC--CCceEEEEEeccCCccccccccCceEE
Confidence 9999999999996 79999999999999999999999999 688999999999999999999999999
Q ss_pred EEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccccc-ccCCHHHHHHhhcCCC
Q 000672 1224 IVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLFEFGD 1302 (1360)
Q Consensus 1224 i~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K~~La~~Vvd~~~~~-r~ls~~EL~eLf~~~~ 1302 (1360)
|||.+|||+.+.||-+|+|||||+|.|+|||||.+.||||+|+++...|+.|-+-++++++.. ..|+..++.+||....
T Consensus 1352 FYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~~ 1431 (1958)
T KOG0391|consen 1352 FYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVYL 1431 (1958)
T ss_pred EecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999998876 5789999999999843
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-78 Score=740.20 Aligned_cols=522 Identities=35% Similarity=0.581 Sum_probs=421.1
Q ss_pred cccccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccC---CCceE
Q 000672 712 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG---LRTAL 788 (1360)
Q Consensus 712 ~~v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~---~k~~L 788 (1360)
..+.+.|.+...|||||++|++|||+++.+.+.- ....|||+||+||+|||+|+|+||+++++..+.. ..+.|
T Consensus 227 v~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~----~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~l 302 (776)
T KOG0390|consen 227 VHVVIDPLLKKILRPHQREGFEFLYKNLAGLIRP----KNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPL 302 (776)
T ss_pred ceEEecccHhhhcCchHHHHHHHHHhhhhccccc----CCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccE
Confidence 4567889999999999999999999998764321 2578999999999999999999999999886542 25789
Q ss_pred EEechhhHHHHHHHHHHhCCC-CCCCeEEEEecCcchhHHHHHHH--HHhhcCCEEEEcccccccccccccccchhhHHH
Q 000672 789 IVTPVNVLHNWKQEFMKWRPS-ELKPLRVFMLEDVSRDRRAELLA--KWRAKGGVFLIGYTAFRNLSFGKHVKDRNMARE 865 (1360)
Q Consensus 789 IV~P~sLl~QW~~Ei~k~~p~-~~~~l~V~~~~g~~~~~r~~~l~--~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~ 865 (1360)
||||.+|+.||.+||.+|... .+.++.++............++. .-.-..-|.+++|++++ ..
T Consensus 303 VV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~--------------~~ 368 (776)
T KOG0390|consen 303 VVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETAS--------------DY 368 (776)
T ss_pred EEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHH--------------HH
Confidence 999999999999999999874 44444444333220001111110 00112346777777765 23
Q ss_pred HHhhhcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCc
Q 000672 866 ICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPI 945 (1360)
Q Consensus 866 i~~ll~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi 945 (1360)
...++...+++|||||+|++||..|.+++++..+++++|++|||||+||++.|||++|+|++|+++|+...|.+.|..|+
T Consensus 369 ~~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i 448 (776)
T KOG0390|consen 369 CRKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPI 448 (776)
T ss_pred HHHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhccc
Confidence 45566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchH
Q 000672 946 ENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNE 1025 (1360)
Q Consensus 946 ~~g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~ 1025 (1360)
..++..+.+..+... ..+...|..+...|++||+...+.+.||++.+++|+|.+++.|..+|..++... . ..
T Consensus 449 ~~~~~~~~s~e~~~~-~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~------~~ 520 (776)
T KOG0390|consen 449 LRGRDADASEEDRER-EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-K------MR 520 (776)
T ss_pred ccccCCCcchhhhhh-HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-H------hh
Confidence 999888877776665 566889999999999999999999999999999999999999999999998753 1 11
Q ss_pred HHHhhHHHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhh-
Q 000672 1026 KIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWND- 1104 (1360)
Q Consensus 1026 ~~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~- 1104 (1360)
......+..+..|.++|+||.|+.......-. .... .......
T Consensus 521 ~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e----------~~~~--------------------------~~~~~~~~ 564 (776)
T KOG0390|consen 521 TLKGYALELITKLKKLCNHPSLLLLCEKTEKE----------KAFK--------------------------NPALLLDP 564 (776)
T ss_pred hhhcchhhHHHHHHHHhcCHHhhccccccccc----------cccc--------------------------ChHhhhcc
Confidence 12223777888999999999998522110000 0000 0000000
Q ss_pred hhhhccccccccChhHHHHHHHHHhhhc-CCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHH
Q 000672 1105 LLHEHTYKELDYSGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESS 1183 (1360)
Q Consensus 1105 ll~~~~~~~~~~S~Kl~~L~eiL~~~~~-~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~ 1183 (1360)
............|+|+..|+.+|....+ .-.++++-++++.++++++.+++ |. |+.++++||+|+..
T Consensus 565 ~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~-----------~~-g~~~~rLdG~~~~~ 632 (776)
T KOG0390|consen 565 GKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCR-----------WR-GYEVLRLDGKTSIK 632 (776)
T ss_pred cccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHh-----------hc-CceEEEEcCCCchH
Confidence 0001112223458999999999855543 34678888888999999999988 45 99999999999999
Q ss_pred HHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHH
Q 000672 1184 ERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEE 1263 (1360)
Q Consensus 1184 eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEE 1263 (1360)
+|+.+|+.||++.++. +|||+|++|||+||||++|+|||+|||+|||+.+.||++||||.||+|+||||||++.||+||
T Consensus 633 qRq~~vd~FN~p~~~~-~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEE 711 (776)
T KOG0390|consen 633 QRQKLVDTFNDPESPS-FVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEE 711 (776)
T ss_pred HHHHHHHhccCCCCCc-eEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchH
Confidence 9999999999987654 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccc-ccccCCHHHHHHhhcCCCCCCCCh
Q 000672 1264 KIYKRQVTKEGLAARVVDRQQ-VHRTISKEEMLHLFEFGDDENPDP 1308 (1360)
Q Consensus 1264 kI~~rq~~K~~La~~Vvd~~~-~~r~ls~~EL~eLf~~~~d~~~d~ 1308 (1360)
+||+||..|+.+...|++... ..++++.+++..+|....++..++
T Consensus 712 k~~qrq~~K~~lS~~v~~~~~~~~~~~~~~~~~~lf~~~~~~~~e~ 757 (776)
T KOG0390|consen 712 KIYQRQTHKEGLSSMVFDEEEDVEKHFFTEDLKTLFDLELDTIVET 757 (776)
T ss_pred HHHHHHHHhhhhhheEEecccccccccchHHHHHHHhhhccccccc
Confidence 999999999999999999764 457888899999999988765443
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-76 Score=686.72 Aligned_cols=512 Identities=31% Similarity=0.457 Sum_probs=405.3
Q ss_pred CcccccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEE
Q 000672 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 790 (1360)
Q Consensus 711 ~~~v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV 790 (1360)
...++.|.-+..+|+.||+.|+.|+...+ ..|-+|||||+||||||+|+|++++++....+. ++|+|||
T Consensus 555 t~tV~qPkil~ctLKEYQlkGLnWLvnlY----------dqGiNGILADeMGLGKTVQsisvlAhLaE~~nI-wGPFLVV 623 (1185)
T KOG0388|consen 555 TRTVPQPKILKCTLKEYQLKGLNWLVNLY----------DQGINGILADEMGLGKTVQSISVLAHLAETHNI-WGPFLVV 623 (1185)
T ss_pred eeeccCchhhhhhhHHHhhccHHHHHHHH----------HccccceehhhhccchhHHHHHHHHHHHHhccC-CCceEEe
Confidence 34678899999999999999999997654 568899999999999999999999999877664 6899999
Q ss_pred echhhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHH--------hhcCCEEEEcccccccccccccccchhh
Q 000672 791 TPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKW--------RAKGGVFLIGYTAFRNLSFGKHVKDRNM 862 (1360)
Q Consensus 791 ~P~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~--------~~~~~VvItSY~~~r~l~~~~~~~~~~~ 862 (1360)
+|+++++||.+||.+|+|. +++.-|.|+... |..+.+.| ..+++|+||+|+++.. +..+
T Consensus 624 tpaStL~NWaqEisrFlP~----~k~lpywGs~~e-RkiLrKfw~rKnmY~rna~fhVviTSYQlvVt--------Deky 690 (1185)
T KOG0388|consen 624 TPASTLHNWAQEISRFLPS----FKVLPYWGSPSE-RKILRKFWNRKNMYRRNAPFHVVITSYQLVVT--------DEKY 690 (1185)
T ss_pred ehHHHHhHHHHHHHHhCcc----ceeecCcCChhh-hHHHHHhcchhhhhccCCCceEEEEeeeeeec--------hHHH
Confidence 9999999999999999998 888888876543 33333333 3467899999998764 3333
Q ss_pred HHHHHhhhcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhcc
Q 000672 863 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQ 942 (1360)
Q Consensus 863 ~~~i~~ll~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~ 942 (1360)
.+ ...|.++|+|||+.||...|.+++.+..++++.|++||||||||+..|||.||+|++|.+|.+..+|..||.
T Consensus 691 ~q------kvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFS 764 (1185)
T KOG0388|consen 691 LQ------KVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFS 764 (1185)
T ss_pred HH------hhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHh
Confidence 33 348999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhccccccc
Q 000672 943 NPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRV 1022 (1360)
Q Consensus 943 ~pi~~g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~ 1022 (1360)
+.|+..-..+.+..+ +....||.+|+|||+||.+++|..+|..|++..|+|.||..|+.+|+.+-....
T Consensus 765 KdIEshAe~~~tlne-----qqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS------ 833 (1185)
T KOG0388|consen 765 KDIESHAEMNTTLNE-----QQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS------ 833 (1185)
T ss_pred hhhHhHHHhcCCcCH-----HHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh------
Confidence 988766555444433 345678999999999999999999999999999999999999999998854431
Q ss_pred chHHHHhhHHHHHHHHHHHhcCcchhhhccccCCCCCccccCCC---C------c------------ccccc--------
Q 000672 1023 SNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSS---S------D------------ENMDY-------- 1073 (1360)
Q Consensus 1023 ~~~~~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~---~------d------------e~~~~-------- 1073 (1360)
....+..+++||++||||.|+.......+...+..+.-. + + +....
T Consensus 834 -----~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~ 908 (1185)
T KOG0388|consen 834 -----SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIER 908 (1185)
T ss_pred -----HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHH
Confidence 112345889999999999999765443322111100000 0 0 00000
Q ss_pred -----cccccCCCccchhh--hcCCCCCc--------------------cchhhhhhhhhhhc-----------------
Q 000672 1074 -----NVVIGEKPRNMNDF--LQGKNDDG--------------------FFQKDWWNDLLHEH----------------- 1109 (1360)
Q Consensus 1074 -----~~~~~e~~~~~~d~--~~~~~~~~--------------------~~~~~~~~~ll~~~----------------- 1109 (1360)
.++.|+.+.....- +....+.- .........++...
T Consensus 909 ~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~a 988 (1185)
T KOG0388|consen 909 INGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAA 988 (1185)
T ss_pred HhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCC
Confidence 00011111000000 00000000 00000000000000
Q ss_pred -------------------------------cccccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCC
Q 000672 1110 -------------------------------TYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLP 1158 (1360)
Q Consensus 1110 -------------------------------~~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~ 1158 (1360)
.-..+..|+|+..|.++|..+...|++||+|.|.+.|+++|+++|..
T Consensus 989 pPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~y-- 1066 (1185)
T KOG0388|consen 989 PPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVY-- 1066 (1185)
T ss_pred CCeeeecccCCCCCCccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHh--
Confidence 00113459999999999999999999999999999999999999986
Q ss_pred CCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHh
Q 000672 1159 RPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAI 1238 (1360)
Q Consensus 1159 ~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAi 1238 (1360)
+|+.|+++||+.+...|..++..|+. +.++|||+||+|||.|||||+|++|||||.+|||+.+.||+
T Consensus 1067 ----------r~Y~ylRLDGSsk~~dRrd~vrDwQ~---sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAM 1133 (1185)
T KOG0388|consen 1067 ----------RGYTYLRLDGSSKASDRRDVVRDWQA---SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAM 1133 (1185)
T ss_pred ----------hccceEEecCcchhhHHHHHHhhccC---CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHH
Confidence 79999999999999999999999997 56889999999999999999999999999999999999999
Q ss_pred HhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccc
Q 000672 1239 YRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQ 1283 (1360)
Q Consensus 1239 GRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K~~La~~Vvd~~ 1283 (1360)
+|+||+||++.|.||||+++|||||+|+.|...|..+...|+.++
T Consensus 1134 DRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1134 DRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred HHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999888775
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8e-75 Score=701.13 Aligned_cols=499 Identities=32% Similarity=0.469 Sum_probs=422.9
Q ss_pred hhhhccCCcccccCcch-hhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhccc
Q 000672 704 NVVREKGEEAVRIPSSI-SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL 782 (1360)
Q Consensus 704 ~~~~~~~~~~v~vP~~l-~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~ 782 (1360)
...+...+.....|..+ .++|++||+.|++||... ++.+.+||||||||||||+|+|++|.+++...+.
T Consensus 374 s~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSL----------yNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~ 443 (1157)
T KOG0386|consen 374 STAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSL----------YNNNLNGILADEMGLGKTIQTISLITYLMEHKQM 443 (1157)
T ss_pred HhcchhhhccccCcchhcCCCCchhhhhhhHHHhhc----------cCCCcccccchhcccchHHHHHHHHHHHHHHccc
Confidence 33444455666778776 589999999999999754 3678899999999999999999999999987654
Q ss_pred CCCceEEEechhhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhh
Q 000672 783 GLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNM 862 (1360)
Q Consensus 783 ~~k~~LIV~P~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~ 862 (1360)
.+|.|||||.+++.||..||.+|.|+ +..+.|.|....++.-.-.....+++|++|+|+.+.. ++.+
T Consensus 444 -~GP~LvivPlstL~NW~~Ef~kWaPS----v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--------dk~l 510 (1157)
T KOG0386|consen 444 -QGPFLIIVPLSTLVNWSSEFPKWAPS----VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--------DKAL 510 (1157)
T ss_pred -CCCeEEeccccccCCchhhccccccc----eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--------CHHH
Confidence 57999999999999999999999998 7888888877665554444455788999999987542 3332
Q ss_pred HHHHHhhhcCCCCEEEEeCCcccCCcchHHHHHHh-hcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhc
Q 000672 863 AREICHALQDGPDILVCDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRF 941 (1360)
Q Consensus 863 ~~~i~~ll~~~fdlVIlDEAH~IKN~~Sk~skal~-~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f 941 (1360)
. -...|.++||||+|+|||..++++..+. ...+++|++|||||+||++.|+|+||+|+-|.+|.+...|..||
T Consensus 511 L------sKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWF 584 (1157)
T KOG0386|consen 511 L------SKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWF 584 (1157)
T ss_pred H------hccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHh
Confidence 2 2348999999999999999999999998 66999999999999999999999999999999999999999999
Q ss_pred cCCcccCCC-CCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhccccc
Q 000672 942 QNPIENGQH-TNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTND 1020 (1360)
Q Consensus 942 ~~pi~~g~~-~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~ 1020 (1360)
..|+.+.+. ...+..+.-+ ..++||++|+||++||.+++|...||.|+++++.|.||..|+.+|..+...-.....
T Consensus 585 N~PFantGek~eLteEEtlL---IIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d 661 (1157)
T KOG0386|consen 585 NQPFANTGEKVELTEEETLL---IIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKD 661 (1157)
T ss_pred hhhhhhcCCcccccchHHHH---HHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcC
Confidence 999988663 2333333333 356689999999999999999999999999999999999999999999875444333
Q ss_pred ccchHHHHhhHHHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhh
Q 000672 1021 RVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKD 1100 (1360)
Q Consensus 1021 ~~~~~~~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~ 1100 (1360)
.....+..+.++...+.||++||||+++........+ ....
T Consensus 662 ~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~-------------------------------------~~~~-- 702 (1157)
T KOG0386|consen 662 TAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTL-------------------------------------HYDI-- 702 (1157)
T ss_pred chhccccchhhhhHhHHHHHhcCCchhhhhhcccccc-------------------------------------ccCh--
Confidence 3334555678999999999999999998533221100 0000
Q ss_pred hhhhhhhhccccccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCC
Q 000672 1101 WWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRT 1180 (1360)
Q Consensus 1101 ~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGst 1180 (1360)
...+..|||+.+|..+|..+...|++||.|+|.+..+++++.+|.- .++.|.++||+|
T Consensus 703 ----------~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~------------~~~kYlRLDG~T 760 (1157)
T KOG0386|consen 703 ----------KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQI------------REYKYLRLDGQT 760 (1157)
T ss_pred ----------hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhh------------hhhheeeecCCc
Confidence 1123568999999999999999999999999999999999999985 789999999999
Q ss_pred CHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCC
Q 000672 1181 ESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 1260 (1360)
Q Consensus 1181 s~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gT 1260 (1360)
+.++|-.+++.||.| +..+++||+||+|||.|+|||.|++||+||+.|||..+.||.+|+|||||++.|.|+||++-++
T Consensus 761 K~~eRg~ll~~FN~P-ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 761 KVEERGDLLEIFNAP-DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred chhhHHHHHHHhcCC-CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhH
Confidence 999999999999987 5668999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCHHHHHH
Q 000672 1261 MEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLH 1296 (1360)
Q Consensus 1261 IEEkI~~rq~~K~~La~~Vvd~~~~~r~ls~~EL~e 1296 (1360)
+||+|+.++..|..+...|+..+.....-|.++-..
T Consensus 840 veE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~ 875 (1157)
T KOG0386|consen 840 VEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREM 875 (1157)
T ss_pred HHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHH
Confidence 999999999999999999998876665555554333
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.5e-71 Score=646.39 Aligned_cols=533 Identities=24% Similarity=0.372 Sum_probs=407.8
Q ss_pred cccccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcc------cCCC
Q 000672 712 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN------LGLR 785 (1360)
Q Consensus 712 ~~v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~------~~~k 785 (1360)
...+-|.++...|.|||+.|++||..+. ...+.||||||+||||||+++|++|.+-..... ....
T Consensus 314 ~lte~P~g~~v~LmpHQkaal~Wl~wRE---------~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~ 384 (901)
T KOG4439|consen 314 DLTETPDGLKVELMPHQKAALRWLLWRE---------SQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS 384 (901)
T ss_pred cccCCCCcceeecchhhhhhhhhhcccc---------cCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC
Confidence 4456789999999999999999997643 367899999999999999999999977553221 1123
Q ss_pred ceEEEechhhHHHHHHHHHHhCCCCCCCeEEEEecCcch-hHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHH
Q 000672 786 TALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAR 864 (1360)
Q Consensus 786 ~~LIV~P~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~-~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~ 864 (1360)
++|||||.+|+.||..|+.+-+.. ..+.||+|||..+ .... +....|+||||||..+.+...+..- ...
T Consensus 385 ~TLII~PaSli~qW~~Ev~~rl~~--n~LsV~~~HG~n~r~i~~----~~L~~YDvViTTY~lva~~~~~e~~----~~~ 454 (901)
T KOG4439|consen 385 KTLIICPASLIHQWEAEVARRLEQ--NALSVYLYHGPNKREISA----KELRKYDVVITTYNLVANKPDDELE----EGK 454 (901)
T ss_pred CeEEeCcHHHHHHHHHHHHHHHhh--cceEEEEecCCccccCCH----HHHhhcceEEEeeeccccCCchhhh----ccc
Confidence 699999999999999999988765 4589999999873 3333 3346789999999988763221111 111
Q ss_pred HHHhhhcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCC
Q 000672 865 EICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNP 944 (1360)
Q Consensus 865 ~i~~ll~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~p 944 (1360)
....++...|.+||+||||.|||+.++.+.|++.|++..||+||||||||++.|+|+|+.||+..+|++...|+.++.++
T Consensus 455 ~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~ 534 (901)
T KOG4439|consen 455 NSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNM 534 (901)
T ss_pred CccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCc
Confidence 12344556899999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhh-----cCCCceEEEEEecCCHHHHHHHHHHHHhhcccc
Q 000672 945 IENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK-----DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTN 1019 (1360)
Q Consensus 945 i~~g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~-----~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~ 1019 (1360)
-.-+. .++.-+.+++++||++..+.. .||.+...++.++|+..+...|+.+.+......
T Consensus 535 s~~g~----------------~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~ 598 (901)
T KOG4439|consen 535 SKGGA----------------NRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLF 598 (901)
T ss_pred cccch----------------hhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHH
Confidence 33221 123445788999999988876 799999999999999999999987654211000
Q ss_pred --------------c--------------------------ccchHHHHhhHHHHHHHHHHHhcCcchhhhccccCCCCC
Q 000672 1020 --------------D--------------------------RVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSR 1059 (1360)
Q Consensus 1020 --------------~--------------------------~~~~~~~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~ 1059 (1360)
. ..++......++..+.+|||+|+||.++....+..-...
T Consensus 599 kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~ 678 (901)
T KOG4439|consen 599 KQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQM 678 (901)
T ss_pred HHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhh
Confidence 0 000111223478889999999999987764433111111
Q ss_pred ccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhccccccccChhHHHHHHHHHhh-hcCCCeEE
Q 000672 1060 EDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMC-SNMGDKSL 1138 (1360)
Q Consensus 1060 e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~-~~~g~KVL 1138 (1360)
...++++.+ ..+.............+ ........ ....+....|.....|.|+..+++++..+ ....+|++
T Consensus 679 ~g~~~sde~-~~e~~~l~el~k~~~T~--~~~D~~ed-----~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~v 750 (901)
T KOG4439|consen 679 NGGDDSDEE-QLEEDNLAELEKNDETD--CSDDNCED-----LPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVV 750 (901)
T ss_pred cCcchhhhh-hhhhhHHHhhhhccccc--cccccccc-----ccccchhhhcccccchhHHHHHHHHHHHHhhcccceee
Confidence 111111111 00000000000000000 00000000 00112223355667899999999999987 56689999
Q ss_pred EEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccC
Q 000672 1139 VFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHS 1218 (1360)
Q Consensus 1139 IFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~ 1218 (1360)
|.|||+.+|+++...|.. .|..|..++|....++|+.+|+.||.. ++..+|+|+|..|||+||||++
T Consensus 751 iVSQwtsvLniv~~hi~~------------~g~~y~si~Gqv~vK~Rq~iv~~FN~~-k~~~rVmLlSLtAGGVGLNL~G 817 (901)
T KOG4439|consen 751 IVSQWTSVLNIVRKHIQK------------GGHIYTSITGQVLVKDRQEIVDEFNQE-KGGARVMLLSLTAGGVGLNLIG 817 (901)
T ss_pred ehhHHHHHHHHHHHHHhh------------CCeeeeeecCccchhHHHHHHHHHHhc-cCCceEEEEEEccCcceeeecc
Confidence 999999999999999996 689999999999999999999999975 4558899999999999999999
Q ss_pred CCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccccc--cccCCHHHHHH
Q 000672 1219 ANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV--HRTISKEEMLH 1296 (1360)
Q Consensus 1219 An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K~~La~~Vvd~~~~--~r~ls~~EL~e 1296 (1360)
|||+|++|.+|||+.+.||-+||||+||+|+|+||||++.||+|++|...|..|..++..|+.+... .+.+|..+|..
T Consensus 818 aNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~ 897 (901)
T KOG4439|consen 818 ANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKK 897 (901)
T ss_pred cceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997654 68999999999
Q ss_pred hhcC
Q 000672 1297 LFEF 1300 (1360)
Q Consensus 1297 Lf~~ 1300 (1360)
||++
T Consensus 898 LFgl 901 (901)
T KOG4439|consen 898 LFGL 901 (901)
T ss_pred HhCC
Confidence 9985
No 14
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-70 Score=618.89 Aligned_cols=544 Identities=24% Similarity=0.348 Sum_probs=401.7
Q ss_pred cccccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEe
Q 000672 712 EAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 791 (1360)
Q Consensus 712 ~~v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~ 791 (1360)
...++|.++...|.|||++|+.|+..+.. +...|||||||||+|||+|+|++++.- ....|+||||
T Consensus 173 e~aeqP~dlii~LL~fQkE~l~Wl~~QE~---------Ss~~GGiLADEMGMGKTIQtIaLllae-----~~ra~tLVva 238 (791)
T KOG1002|consen 173 ERAEQPDDLIIPLLPFQKEGLAWLTSQEE---------SSVAGGILADEMGMGKTIQTIALLLAE-----VDRAPTLVVA 238 (791)
T ss_pred hcccCcccceecchhhhHHHHHHHHHhhh---------hhhccceehhhhccchHHHHHHHHHhc-----cccCCeeEEc
Confidence 34578999999999999999999976543 346799999999999999999998773 2345899999
Q ss_pred chhhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccc--c-ccchhhHHHHHh
Q 000672 792 PVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGK--H-VKDRNMAREICH 868 (1360)
Q Consensus 792 P~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~--~-~~~~~~~~~i~~ 868 (1360)
|.--+.||.+||.+++.+ .++++.|+|..+......+ .+++|++|||..+.+..... . .+.-....+...
T Consensus 239 P~VAlmQW~nEI~~~T~g---slkv~~YhG~~R~~nikel----~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~Sl 311 (791)
T KOG1002|consen 239 PTVALMQWKNEIERHTSG---SLKVYIYHGAKRDKNIKEL----MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSL 311 (791)
T ss_pred cHHHHHHHHHHHHHhccC---ceEEEEEecccccCCHHHh----hcCcEEEEecHHHHHHHHhccccccccCCcccccch
Confidence 999999999999999874 4899999998877655544 46799999999875432110 0 000011112223
Q ss_pred hhcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCCh-----------HH-
Q 000672 869 ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS-----------HE- 936 (1360)
Q Consensus 869 ll~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~-----------~e- 936 (1360)
+-+..|.+||+||||.||+..|.+++|+..|.+.+||+|||||+||.+.|+|+|+.||+.++|..+ ..
T Consensus 312 LHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~f 391 (791)
T KOG1002|consen 312 LHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKF 391 (791)
T ss_pred hhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceee
Confidence 334589999999999999999999999999999999999999999999999999999997765321 01
Q ss_pred -------------------HHhhccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhh--cCCCceEEE
Q 000672 937 -------------------FRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK--DLPPKTVFV 995 (1360)
Q Consensus 937 -------------------F~~~f~~pi~~g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~--~LP~k~e~v 995 (1360)
|......||........ ++......+..++.+|+||++-.-.. .|||....+
T Consensus 392 tdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGp-------Gk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~v 464 (791)
T KOG1002|consen 392 TDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGP-------GKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTV 464 (791)
T ss_pred cccccCCcccchhhhhhhhhcccccccchhhcccCc-------hHHHHHHHHHHHHHHHHHHhhcccccccCCCccceee
Confidence 12222234443322211 12223356777889999998855444 499999999
Q ss_pred EEecCCHHHHHHHHHHHHhhcccccccchHH----HHhhHHHHHHHHHHHhcCcchhhhccccCCCCCcccc------CC
Q 000672 996 ITVKLSPLQRRLYKRFLDLHGFTNDRVSNEK----IRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAE------DS 1065 (1360)
Q Consensus 996 V~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~----~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~------d~ 1065 (1360)
..--++.++..+|+.+...........-.++ .+.++|..+.+|||+..||+|+.......++...... .+
T Consensus 465 RrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d 544 (791)
T KOG1002|consen 465 RRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHD 544 (791)
T ss_pred ehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCC
Confidence 9999999999999987653322222222222 2347899999999999999998654332222111000 00
Q ss_pred CCccccccc------------------------ccccCCCccchhhhcCCCCCccchhhhh-hhhhhhccccccccChhH
Q 000672 1066 SSDENMDYN------------------------VVIGEKPRNMNDFLQGKNDDGFFQKDWW-NDLLHEHTYKELDYSGKM 1120 (1360)
Q Consensus 1066 ~~de~~~~~------------------------~~~~e~~~~~~d~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~S~Kl 1120 (1360)
...+..... .......-+. +. ..........+.+- ..++..........|.|+
T Consensus 545 ~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi-Dl-se~alek~~l~~Fk~sSIlnRinm~~~qsSTKI 622 (791)
T KOG1002|consen 545 PAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI-DL-SEPALEKTDLKGFKASSILNRINMDDWQSSTKI 622 (791)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc-cc-cchhhhhcchhhhhhHHHhhhcchhhhcchhHH
Confidence 000000000 0000000000 00 00000000000111 123333444566789999
Q ss_pred HHHHHHHHhhhcCC--CeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCC
Q 000672 1121 VLLLDILTMCSNMG--DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1198 (1360)
Q Consensus 1121 ~~L~eiL~~~~~~g--~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~ 1198 (1360)
++|.+-|..+.+.. -|.||||||+++||+|+-.|.+ .|+..+.+.|+|++..|...|+.|.+ ++
T Consensus 623 EAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k------------aGfscVkL~GsMs~~ardatik~F~n--d~ 688 (791)
T KOG1002|consen 623 EALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGK------------AGFSCVKLVGSMSPAARDATIKYFKN--DI 688 (791)
T ss_pred HHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhc------------cCceEEEeccCCChHHHHHHHHHhcc--CC
Confidence 99999998776654 4999999999999999999986 79999999999999999999999998 56
Q ss_pred CceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 000672 1199 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAAR 1278 (1360)
Q Consensus 1199 ~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K~~La~~ 1278 (1360)
.++|||+|.+|||+.|||+.|++|+++||||||+.+.||.+|+|||||.|||.|.||+.++|||++|+.+|..|..++.+
T Consensus 689 ~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~miha 768 (791)
T KOG1002|consen 689 DCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHA 768 (791)
T ss_pred CeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccccc-cccCCHHHHHHhhc
Q 000672 1279 VVDRQQV-HRTISKEEMLHLFE 1299 (1360)
Q Consensus 1279 Vvd~~~~-~r~ls~~EL~eLf~ 1299 (1360)
.++.++. ...|+.+||.-||+
T Consensus 769 Ti~qde~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 769 TIGQDEEAISKLTEEDMQFLFN 790 (791)
T ss_pred hcCCcHHHHHhcCHHHHHHHhc
Confidence 9987653 46899999999996
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.4e-60 Score=620.11 Aligned_cols=504 Identities=35% Similarity=0.520 Sum_probs=405.0
Q ss_pred cchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHH
Q 000672 718 SSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 797 (1360)
Q Consensus 718 ~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~ 797 (1360)
..+...|+|||..|+.||.+.+. ..+.||||||+||||||+|+|+++.+.+.......+|+|||||.+++.
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~---------~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~ 403 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLR---------SNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLS 403 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH---------hccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHH
Confidence 67779999999999999974221 457899999999999999999999886555544357999999999999
Q ss_pred HHHHHHHHhCCCCCCCeE-EEEecCcch--hHHHHHHHHHhh-----cCCEEEEcccccccccccccccchhhHHHHHhh
Q 000672 798 NWKQEFMKWRPSELKPLR-VFMLEDVSR--DRRAELLAKWRA-----KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869 (1360)
Q Consensus 798 QW~~Ei~k~~p~~~~~l~-V~~~~g~~~--~~r~~~l~~~~~-----~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~l 869 (1360)
||.+|+.+|.|. ++ +..++|... ..+...+..+.. .++++++||+.++... .....+
T Consensus 404 nw~~e~~k~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~-----------~~~~~l 468 (866)
T COG0553 404 NWKREFEKFAPD----LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL-----------VDHGGL 468 (866)
T ss_pred HHHHHHhhhCcc----ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh-----------hhHHHH
Confidence 999999999987 55 777777653 222333333333 2789999999887421 122334
Q ss_pred hcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhh-hhccCCCC-ChHHHHhhccCCccc
Q 000672 870 LQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVD-FVREGFLG-SSHEFRNRFQNPIEN 947 (1360)
Q Consensus 870 l~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~-fL~p~~lg-s~~eF~~~f~~pi~~ 947 (1360)
....|+++|+||||+|||..|..+++++.+++.++++|||||++|++.|||++++ |+.|++++ +...|..+|..|+..
T Consensus 469 ~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~ 548 (866)
T COG0553 469 KKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQA 548 (866)
T ss_pred hhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhh
Confidence 4559999999999999999999999999999999999999999999999999999 99999999 559999999999887
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhh--hhhcCCCceEEEEEecCCHHHHHHHHHHHHh---hccccccc
Q 000672 948 GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV--VKKDLPPKTVFVITVKLSPLQRRLYKRFLDL---HGFTNDRV 1022 (1360)
Q Consensus 948 g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~--v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~---~~~~~~~~ 1022 (1360)
...... ..........|+..+.+|++||++.+ +...||++.+.+++|.+++.|..+|..++.. ........
T Consensus 549 ~~~~~~----~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~ 624 (866)
T COG0553 549 EEDIGP----LEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDL 624 (866)
T ss_pred cccccc----hhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765543 12222334448899999999999999 8889999999999999999999999998872 11111110
Q ss_pred chHH--------HHhhHHHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCC
Q 000672 1023 SNEK--------IRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDD 1094 (1360)
Q Consensus 1023 ~~~~--------~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~ 1094 (1360)
.... ....++..+..|+++|+||.++.......... .... ... . ...
T Consensus 625 ~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~--~~~~------------~~~----------~-~~~ 679 (866)
T COG0553 625 EKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDR--IVLL------------LRE----------D-KDF 679 (866)
T ss_pred HhhccccccccchhhHHHHHHHHHHHhccCccccccccccccch--hhhh------------hhc----------c-ccc
Confidence 0111 14468899999999999999875331000000 0000 000 0 000
Q ss_pred ccchhhhhhhhhhhccccccccC-hhHHHHHHHH-HhhhcCCC--eEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCC
Q 000672 1095 GFFQKDWWNDLLHEHTYKELDYS-GKMVLLLDIL-TMCSNMGD--KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKG 1170 (1360)
Q Consensus 1095 ~~~~~~~~~~ll~~~~~~~~~~S-~Kl~~L~eiL-~~~~~~g~--KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~G 1170 (1360)
. .........| +|+..+.++| ......|. |+|||+||+.++++|+.+|.. .+
T Consensus 680 ~------------~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~------------~~ 735 (866)
T COG0553 680 D------------YLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKA------------LG 735 (866)
T ss_pred c------------cccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHh------------cC
Confidence 0 0001112456 8999999999 78888898 999999999999999999996 45
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcE
Q 000672 1171 KDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 1250 (1360)
Q Consensus 1171 i~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V 1250 (1360)
+.|++++|+++...|+.++++|+++ ....||++|++|||.||||++|++||+|||+|||+.+.||++|+||+||+++|
T Consensus 736 ~~~~~ldG~~~~~~r~~~i~~f~~~--~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v 813 (866)
T COG0553 736 IKYVRLDGSTPAKRRQELIDRFNAD--EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPV 813 (866)
T ss_pred CcEEEEeCCCChhhHHHHHHHhhcC--CCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCccee
Confidence 8899999999999999999999985 55678999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHHHHhcc--ccccccCCHHHHHHhhcC
Q 000672 1251 FAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR--QQVHRTISKEEMLHLFEF 1300 (1360)
Q Consensus 1251 ~VyrLva~gTIEEkI~~rq~~K~~La~~Vvd~--~~~~r~ls~~EL~eLf~~ 1300 (1360)
.||+|+++||+||+|+.+|..|+.+...+++. ......++.+++..+|..
T Consensus 814 ~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 865 (866)
T COG0553 814 KVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDLFSL 865 (866)
T ss_pred EEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHHHHHHhcc
Confidence 99999999999999999999999999999995 456678999999999865
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-54 Score=491.97 Aligned_cols=430 Identities=24% Similarity=0.319 Sum_probs=332.0
Q ss_pred cCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhh
Q 000672 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV 795 (1360)
Q Consensus 716 vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sL 795 (1360)
.|+.+...|.|||++||.|.++ .|+++|||||||||||+|||++..++... .|.|||||++|
T Consensus 191 ~d~kLvs~LlPFQreGv~faL~-------------RgGR~llADeMGLGKTiQAlaIA~yyraE-----wplliVcPAsv 252 (689)
T KOG1000|consen 191 MDPKLVSRLLPFQREGVIFALE-------------RGGRILLADEMGLGKTIQALAIARYYRAE-----WPLLIVCPASV 252 (689)
T ss_pred cCHHHHHhhCchhhhhHHHHHh-------------cCCeEEEecccccchHHHHHHHHHHHhhc-----CcEEEEecHHH
Confidence 4889999999999999999974 58899999999999999999988776433 59999999999
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCC
Q 000672 796 LHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPD 875 (1360)
Q Consensus 796 l~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fd 875 (1360)
...|.+++.+|+|... ++.+...+... .........|.|+||+++..+. ..+....|.
T Consensus 253 rftWa~al~r~lps~~-pi~vv~~~~D~-------~~~~~t~~~v~ivSye~ls~l~--------------~~l~~~~~~ 310 (689)
T KOG1000|consen 253 RFTWAKALNRFLPSIH-PIFVVDKSSDP-------LPDVCTSNTVAIVSYEQLSLLH--------------DILKKEKYR 310 (689)
T ss_pred hHHHHHHHHHhccccc-ceEEEecccCC-------ccccccCCeEEEEEHHHHHHHH--------------HHHhcccce
Confidence 9999999999999853 33333322111 1111223579999999876421 122333699
Q ss_pred EEEEeCCcccCCcchHHHHHHhhc--ccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCC
Q 000672 876 ILVCDEAHMIKNTRADTTQALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNS 953 (1360)
Q Consensus 876 lVIlDEAH~IKN~~Sk~skal~~L--ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~s 953 (1360)
+||+||+|++|+..+++.+++.-+ .+.|.|+|||||-...+.|||.++..+++.+|.+..+|..+|++--.-+...+.
T Consensus 311 vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dy 390 (689)
T KOG1000|consen 311 VVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDY 390 (689)
T ss_pred EEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeec
Confidence 999999999999999999998887 789999999999999999999999999999999999999999975433222221
Q ss_pred ChHHHHHHHHHHHHHHHHH-hHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHH
Q 000672 954 TSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF 1032 (1360)
Q Consensus 954 t~~~~~~~~~r~~~L~~~L-~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~ 1032 (1360)
.. -.+...|+-+| +..|+||++.+|+.+||||...++. ..++.+....+.++......... +...+
T Consensus 391 kg------~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~-~~~gr~da~~~~lv~~a~~~t~~---~~~e~--- 457 (689)
T KOG1000|consen 391 KG------CTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVY-VSGGRIDARMDDLVKAAADYTKV---NSMER--- 457 (689)
T ss_pred CC------CCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEE-EcCCccchHHHHHHHHhhhcchh---hhhhh---
Confidence 11 01233344444 3468999999999999999555544 44444444444443322110000 00000
Q ss_pred HHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcccc
Q 000672 1033 AGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYK 1112 (1360)
Q Consensus 1033 ~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~ 1112 (1360)
+|-.++. +.
T Consensus 458 ----------~~~~l~l-------------------------------------------------------------~y 466 (689)
T KOG1000|consen 458 ----------KHESLLL-------------------------------------------------------------FY 466 (689)
T ss_pred ----------hhHHHHH-------------------------------------------------------------HH
Confidence 0000000 00
Q ss_pred ccccChhHHHHHHHHHh----hhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHH
Q 000672 1113 ELDYSGKMVLLLDILTM----CSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKL 1188 (1360)
Q Consensus 1113 ~~~~S~Kl~~L~eiL~~----~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~i 1188 (1360)
....-.|+..+.+.|.. .-..+.|+|||+++..++|-|+.++.. +++.++||||+|+...|+.+
T Consensus 467 ~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~------------r~vg~IRIDGst~s~~R~ll 534 (689)
T KOG1000|consen 467 SLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNK------------RKVGSIRIDGSTPSHRRTLL 534 (689)
T ss_pred HHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHH------------cCCCeEEecCCCCchhHHHH
Confidence 01123577777777765 345678999999999999999999986 78999999999999999999
Q ss_pred HHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHH
Q 000672 1189 VERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKR 1268 (1360)
Q Consensus 1189 I~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~r 1268 (1360)
++.|+. +.+++|-++|..|+|.||+|++|+.|||.+.+|||....||.+|+||+||+..|.||+|+++||+|+.++..
T Consensus 535 ~qsFQ~--seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~ 612 (689)
T KOG1000|consen 535 CQSFQT--SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPM 612 (689)
T ss_pred HHHhcc--ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHH
Confidence 999998 677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 000672 1269 QVTKEGLAARVVDRQ 1283 (1360)
Q Consensus 1269 q~~K~~La~~Vvd~~ 1283 (1360)
+..|......+-.+.
T Consensus 613 l~~KL~vl~s~gl~s 627 (689)
T KOG1000|consen 613 LQQKLDVLGSVGLSS 627 (689)
T ss_pred HHHHHHHHhhcccCc
Confidence 999998887775443
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.3e-52 Score=535.53 Aligned_cols=453 Identities=19% Similarity=0.242 Sum_probs=325.1
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHH
Q 000672 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 799 (1360)
Q Consensus 720 l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW 799 (1360)
....|.|||+..+.++.. ....++|||||||||||++|++++..++..+. .+|+|||||.+|+.||
T Consensus 149 ~~~~l~pHQl~~~~~vl~------------~~~~R~LLADEvGLGKTIeAglil~~l~~~g~--~~rvLIVvP~sL~~QW 214 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGR------------RHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR--AERVLILVPETLQHQW 214 (956)
T ss_pred CCCCCCHHHHHHHHHHhh------------ccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC--CCcEEEEcCHHHHHHH
Confidence 346799999999877643 24578999999999999999999988766543 4699999999999999
Q ss_pred HHHHHHhCCCCCCCeEEEEecCcchhHHH-HHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEE
Q 000672 800 KQEFMKWRPSELKPLRVFMLEDVSRDRRA-ELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1360)
Q Consensus 800 ~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~-~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVI 878 (1360)
..|+.+|+.- .+.++++....... .....| ...+++|+||++++.. ......++...|++||
T Consensus 215 ~~El~~kF~l-----~~~i~~~~~~~~~~~~~~~pf-~~~~~vI~S~~~l~~~-----------~~~~~~l~~~~wdlvI 277 (956)
T PRK04914 215 LVEMLRRFNL-----RFSLFDEERYAEAQHDADNPF-ETEQLVICSLDFLRRN-----------KQRLEQALAAEWDLLV 277 (956)
T ss_pred HHHHHHHhCC-----CeEEEcCcchhhhcccccCcc-ccCcEEEEEHHHhhhC-----------HHHHHHHhhcCCCEEE
Confidence 9999887642 23333332211000 000112 3467999999987641 1122344556999999
Q ss_pred EeCCcccCCc---chHHHHHHhhc--ccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccC--Cc------
Q 000672 879 CDEAHMIKNT---RADTTQALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQN--PI------ 945 (1360)
Q Consensus 879 lDEAH~IKN~---~Sk~skal~~L--ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~--pi------ 945 (1360)
|||||+++|. .|+.++++..+ +++++++|||||++|++.|+|++++||+|+.|++...|...... |+
T Consensus 278 vDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~ 357 (956)
T PRK04914 278 VDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQA 357 (956)
T ss_pred EechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHH
Confidence 9999999953 56778999888 67899999999999999999999999999999999999875432 21
Q ss_pred -ccCCC-CCCChHHHHHH---------------------HHHHHHHHHHH-----hHHhhhhhhhhhhhcCCCceEEEEE
Q 000672 946 -ENGQH-TNSTSEDVKIM---------------------NQRSHILYEQL-----KGFVQRMDMNVVKKDLPPKTVFVIT 997 (1360)
Q Consensus 946 -~~g~~-~~st~~~~~~~---------------------~~r~~~L~~~L-----~~fv~Rrtk~~v~~~LP~k~e~vV~ 997 (1360)
..+.. ........... ..+...+..++ ..++.|+++..+. .+|++..+.+.
T Consensus 358 l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~ 436 (956)
T PRK04914 358 LLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIP 436 (956)
T ss_pred HhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEee
Confidence 11111 00000000000 00111122221 2466788888876 68999999999
Q ss_pred ecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccc
Q 000672 998 VKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVI 1077 (1360)
Q Consensus 998 v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~ 1077 (1360)
+++++..+..+.... ...+++ +.+|..+...
T Consensus 437 l~~~~~y~~~~~~~~----------------------~~~~~~-~l~pe~~~~~-------------------------- 467 (956)
T PRK04914 437 LPLPEQYQTAIKVSL----------------------EARARD-MLYPEQIYQE-------------------------- 467 (956)
T ss_pred cCCCHHHHHHHHHhH----------------------HHHHHh-hcCHHHHHHH--------------------------
Confidence 999765333332100 000111 1122110000
Q ss_pred cCCCccchhhhcCCCCCccchhhhhhhhhhhccccccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcC
Q 000672 1078 GEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKL 1157 (1360)
Q Consensus 1078 ~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l 1157 (1360)
+. ....| ...++|+..|.++|+... ++|+||||++..+++.|...|..
T Consensus 468 ---------~~--------~~~~~------------~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~- 515 (956)
T PRK04914 468 ---------FE--------DNATW------------WNFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALRE- 515 (956)
T ss_pred ---------Hh--------hhhhc------------cccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhh-
Confidence 00 00011 234689999999998654 78999999999999999999964
Q ss_pred CCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHH
Q 000672 1158 PRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQA 1237 (1360)
Q Consensus 1158 ~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QA 1237 (1360)
..|+++..++|+++..+|.++++.|+.++ +.++ +||+|.+||+|+||+.|++||+||+||||..++||
T Consensus 516 ----------~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~-~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQR 583 (956)
T PRK04914 516 ----------REGIRAAVFHEGMSIIERDRAAAYFADEE-DGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQR 583 (956)
T ss_pred ----------ccCeeEEEEECCCCHHHHHHHHHHHhcCC-CCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHH
Confidence 26899999999999999999999999743 2344 57888999999999999999999999999999999
Q ss_pred hHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcccccc-ccCCHHHHHHhh
Q 000672 1238 IYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVH-RTISKEEMLHLF 1298 (1360)
Q Consensus 1238 iGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K~~La~~Vvd~~~~~-r~ls~~EL~eLf 1298 (1360)
|||+||+||+++|.||.++.+||++++|+.....|..+++.++...+.. ..|. ++|...+
T Consensus 584 IGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~-~~l~~~l 644 (956)
T PRK04914 584 IGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFG-DELIPYL 644 (956)
T ss_pred hcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999988888765433 3333 4444444
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.7e-51 Score=503.64 Aligned_cols=499 Identities=28% Similarity=0.322 Sum_probs=364.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcc-----cCCCceEEEechhhHHHHHHH
Q 000672 728 QVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN-----LGLRTALIVTPVNVLHNWKQE 802 (1360)
Q Consensus 728 Q~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~-----~~~k~~LIV~P~sLl~QW~~E 802 (1360)
|.....|+|..- .....-.|||+||+||+|||+++|+++........ ...+.+|||||.+++.||..|
T Consensus 135 ~~~~~~~~~~~~-------~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~e 207 (674)
T KOG1001|consen 135 LKQKYRWSLLKS-------REQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTE 207 (674)
T ss_pred HHHHHHHHhhcc-------cccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHH
Confidence 556666665321 13356789999999999999999999876543322 246789999999999999999
Q ss_pred HHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCC
Q 000672 803 FMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEA 882 (1360)
Q Consensus 803 i~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEA 882 (1360)
+.+.... ..+.+++++| +.+.... ...++|++|||.++.+. .+....|-+||+|||
T Consensus 208 lek~~~~--~~l~v~v~~g--r~kd~~e----l~~~dVVltTy~il~~~----------------~l~~i~w~Riildea 263 (674)
T KOG1001|consen 208 LEKVTEE--DKLSIYVYHG--RTKDKSE----LNSYDVVLTTYDILKNS----------------PLVKIKWLRIVLDEA 263 (674)
T ss_pred HhccCCc--cceEEEEecc--cccccch----hcCCceEEeeHHHhhcc----------------cccceeEEEEEeccc
Confidence 9655543 3578888888 2211111 25678999999998751 233458999999999
Q ss_pred cccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHHHHH
Q 000672 883 HMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMN 962 (1360)
Q Consensus 883 H~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~~~~~~~~ 962 (1360)
|.|+|..++.++++..+.+.+||+|||||+||++.|+|+++.|+..+++.....|...+..|+..+.+ .
T Consensus 264 ~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~-----------~ 332 (674)
T KOG1001|consen 264 HTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY-----------K 332 (674)
T ss_pred cccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH-----------H
Confidence 99999999999999999999999999999999999999999999999999999999999999877653 1
Q ss_pred HHHHHHHHHHhHHhhhhhhhhh-----hhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchH----HHHhhHHH
Q 000672 963 QRSHILYEQLKGFVQRMDMNVV-----KKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNE----KIRKSFFA 1033 (1360)
Q Consensus 963 ~r~~~L~~~L~~fv~Rrtk~~v-----~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~----~~~~s~~~ 1033 (1360)
+-...++..|+.++.||++.-. ...|||++..++.+.++..++.+|..+............+. ..+..++.
T Consensus 333 ~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~ 412 (674)
T KOG1001|consen 333 EGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLK 412 (674)
T ss_pred HHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHH
Confidence 2233466778899999988522 23799999999999999999999998876543333222222 22345777
Q ss_pred HHHHHHHHhcCcchhhhccccCCCC-Ccc---------cc---CCCCcccccccccccCCCccch-hhhcCCCCCccc-h
Q 000672 1034 GYQALAQIWNHPGILQLTKDKGYPS-RED---------AE---DSSSDENMDYNVVIGEKPRNMN-DFLQGKNDDGFF-Q 1098 (1360)
Q Consensus 1034 ~l~~LRqic~hP~Ll~~~~~~~~~~-~e~---------~~---d~~~de~~~~~~~~~e~~~~~~-d~~~~~~~~~~~-~ 1098 (1360)
.+.+||++|+||.++.......... ... .. ........+............. .+.......... .
T Consensus 413 ~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~ 492 (674)
T KOG1001|consen 413 NLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPC 492 (674)
T ss_pred HHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCC
Confidence 8889999999998875332211100 000 00 0000000000000000000000 000000000000 0
Q ss_pred hhhhh-----hhhhhccc-----cccccChhHHHHHHHHHhhhcCCC-eEEEEeCchhhHHHHHHHHhcCCCCCCCcccc
Q 000672 1099 KDWWN-----DLLHEHTY-----KELDYSGKMVLLLDILTMCSNMGD-KSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLW 1167 (1360)
Q Consensus 1099 ~~~~~-----~ll~~~~~-----~~~~~S~Kl~~L~eiL~~~~~~g~-KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~ 1167 (1360)
..+.. .++..... .....|.|+..+.++|........ |+||||||+.++++++..|..
T Consensus 493 ~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~----------- 561 (674)
T KOG1001|consen 493 PLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFF----------- 561 (674)
T ss_pred cHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhh-----------
Confidence 00000 01110000 011258899999999985444344 999999999999999999874
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCC
Q 000672 1168 KKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT 1247 (1360)
Q Consensus 1168 ~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQk 1247 (1360)
.++.+.+++|.++...|.+.+..|+. ++.++|+++|.+|||.||||+.|++||++||||||+.+.|||+|+||+||+
T Consensus 562 -~~~~~~~~~g~~~~~~r~~s~~~~~~--~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~ 638 (674)
T KOG1001|consen 562 -KGFVFLRYDGEMLMKIRTKSFTDFPC--DPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQT 638 (674)
T ss_pred -cccccchhhhhhHHHHHHhhhccccc--CccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhccc
Confidence 78999999999999999999999996 566778999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhcc
Q 000672 1248 KPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282 (1360)
Q Consensus 1248 K~V~VyrLva~gTIEEkI~~rq~~K~~La~~Vvd~ 1282 (1360)
++|.|+||+..+|+||+|..+|..|+.+.....+.
T Consensus 639 k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 639 KPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred ceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999988776553
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.1e-48 Score=476.83 Aligned_cols=389 Identities=31% Similarity=0.461 Sum_probs=304.4
Q ss_pred cCcchh---hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec
Q 000672 716 IPSSIS---AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 792 (1360)
Q Consensus 716 vP~~l~---~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P 792 (1360)
.|..+. ..|.|||.+|++|+...+ ..+..+||||+||||||+|+|+|+..++..... .+|.||++|
T Consensus 285 qP~~l~~~~g~L~~~qleGln~L~~~w----------s~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~-~~P~Lv~ap 353 (696)
T KOG0383|consen 285 QPQFLTEPGGTLHPYQLEGLNWLRISW----------SPGVDAILADEMGLGKTVQSIVFLYSLPKEIHS-PGPPLVVAP 353 (696)
T ss_pred CCccccCCCccccccchhhhhhhhccc----------ccCCCcccchhhcCCceeeEEEEEeecccccCC-CCCceeecc
Confidence 455454 889999999999996432 467889999999999999999999888766543 369999999
Q ss_pred hhhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHh--------------------hcCCEEEEccccccccc
Q 000672 793 VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWR--------------------AKGGVFLIGYTAFRNLS 852 (1360)
Q Consensus 793 ~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~--------------------~~~~VvItSY~~~r~l~ 852 (1360)
.+++.||..|+..|+|. +.+..++|....+.......+. ....+.+++|.+..+
T Consensus 354 ~sT~~nwe~e~~~wap~----~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~-- 427 (696)
T KOG0383|consen 354 LSTIVNWEREFELWAPS----FYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEI-- 427 (696)
T ss_pred CccccCCCCchhccCCC----cccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhccc--
Confidence 99999999999999987 5666666654422221111111 122344444444321
Q ss_pred ccccccchhhHHHHHhhhcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCC
Q 000672 853 FGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG 932 (1360)
Q Consensus 853 ~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lg 932 (1360)
+ ..-+....|.++|+||+|+++|..|.+++.+......++++|||||++|++.+++++|+|+.|+.|.
T Consensus 428 ------~------~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~ 495 (696)
T KOG0383|consen 428 ------D------QSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFN 495 (696)
T ss_pred ------C------HHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCccccc
Confidence 1 1223344899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHhhccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHH
Q 000672 933 SSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFL 1012 (1360)
Q Consensus 933 s~~eF~~~f~~pi~~g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll 1012 (1360)
+...|.+.|..-.. ......|+.++.|+++||.+.++.+.+|+|++.++.+.|++.|+++|+.++
T Consensus 496 ~~~~f~e~~~d~~~---------------~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~ 560 (696)
T KOG0383|consen 496 SLEWFLEEFHDISC---------------EEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKIL 560 (696)
T ss_pred chhhhhhhcchhhH---------------HHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHH
Confidence 99999888754211 123456889999999999999999999999999999999999999999987
Q ss_pred HhhcccccccchHHHHhhHHHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCC
Q 000672 1013 DLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKN 1092 (1360)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~ 1092 (1360)
...- ......+..-++++.++.|++.|+||+++........
T Consensus 561 t~n~---~~l~~~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~------------------------------------ 601 (696)
T KOG0383|consen 561 TRNW---QGLLAGVHQYSLLNIVMELRKQCNHPYLSPLEEPLEE------------------------------------ 601 (696)
T ss_pred cCCh---HHHhhcchhHHHHHHHHHHHHhhcCcccCcccccccc------------------------------------
Confidence 6421 1111122233678999999999999999864111000
Q ss_pred CCccchhhhhhhhhhhccccccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCc
Q 000672 1093 DDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKD 1172 (1360)
Q Consensus 1093 ~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~ 1172 (1360)
... . ........|+|+..|..+++.+...|+||+||+|++.++|++++++.. .+ .
T Consensus 602 -~~~----~-------~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~------------~~-~ 656 (696)
T KOG0383|consen 602 -NGE----Y-------LGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTY------------EG-K 656 (696)
T ss_pred -chH----H-------HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhc------------cC-c
Confidence 000 0 001123568999999999999999999999999999999999999986 56 8
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1173 WYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1173 ~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
|.++||..+...|+.++++||.+. ..-.|||+||+|||.|
T Consensus 657 ~~r~dG~~~~~~rq~ai~~~n~~~-~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 657 YERIDGPITGPERQAAIDRFNAPG-SNQFCFLLSTRAGGLG 696 (696)
T ss_pred ceeccCCccchhhhhhccccCCCC-ccceEEEeecccccCC
Confidence 999999999999999999999764 4456899999999998
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1.1e-38 Score=366.14 Aligned_cols=296 Identities=30% Similarity=0.455 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhccc-CCCceEEEechhhHHHHHHHHHH
Q 000672 727 HQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVTPVNVLHNWKQEFMK 805 (1360)
Q Consensus 727 hQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~-~~k~~LIV~P~sLl~QW~~Ei~k 805 (1360)
||+.||.||+........ ........||||||+||+|||+++|+++..+...... +.+++|||||.+++.||..||.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~-~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEY-PNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----T-TSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcc-cccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhcc
Confidence 899999999986511111 1122567899999999999999999999877655432 23479999999999999999999
Q ss_pred hCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCccc
Q 000672 806 WRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMI 885 (1360)
Q Consensus 806 ~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~I 885 (1360)
|++.. .++++.+.+... .......+...++++|+||+++..... . .....+...+|++||+||||.+
T Consensus 80 ~~~~~--~~~v~~~~~~~~--~~~~~~~~~~~~~vvi~ty~~~~~~~~------~---~~~~~l~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 80 WFDPD--SLRVIIYDGDSE--RRRLSKNQLPKYDVVITTYETLRKARK------K---KDKEDLKQIKWDRVIVDEAHRL 146 (299)
T ss_dssp HSGT---TS-EEEESSSCH--HHHTTSSSCCCSSEEEEEHHHHH--TS------T---HTTHHHHTSEEEEEEETTGGGG
T ss_pred ccccc--cccccccccccc--cccccccccccceeeeccccccccccc------c---ccccccccccceeEEEeccccc
Confidence 99431 268888877661 111222344678999999999871110 0 0111223347999999999999
Q ss_pred CCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHHHHHHHH
Q 000672 886 KNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRS 965 (1360)
Q Consensus 886 KN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~~~~~~~~~r~ 965 (1360)
||..|.+++++..+.+.++|+|||||++|++.|+|++++||.|+.+++...|.+.|..+ .........
T Consensus 147 k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~------------~~~~~~~~~ 214 (299)
T PF00176_consen 147 KNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP------------DKENSYENI 214 (299)
T ss_dssp TTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH------------HHTHHHHHH
T ss_pred ccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh------------ccccccccc
Confidence 99999999999999999999999999999999999999999999999999999998655 222334556
Q ss_pred HHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccc--hHHHHhhHHHHHHHHHHHhc
Q 000672 966 HILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVS--NEKIRKSFFAGYQALAQIWN 1043 (1360)
Q Consensus 966 ~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~--~~~~~~s~~~~l~~LRqic~ 1043 (1360)
..|...+++++.|+++.++...||+..+.++.++|++.|+.+|+.+............ .......++..+.+||++|+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp HHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhC
Confidence 7889999999999999999888999999999999999999999988876554433322 33445578999999999999
Q ss_pred Ccchh
Q 000672 1044 HPGIL 1048 (1360)
Q Consensus 1044 hP~Ll 1048 (1360)
||.|+
T Consensus 295 hp~l~ 299 (299)
T PF00176_consen 295 HPYLV 299 (299)
T ss_dssp -THHC
T ss_pred CcccC
Confidence 99874
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-36 Score=377.67 Aligned_cols=354 Identities=17% Similarity=0.290 Sum_probs=252.4
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHH
Q 000672 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHN 798 (1360)
Q Consensus 720 l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~Q 798 (1360)
....|||||.+++.+|+.+ ...++|||..+||+|||+++++++..+ .+++|||||.+ ++.|
T Consensus 252 ~~~~LRpYQ~eAl~~~~~~-----------gr~r~GIIvLPtGaGKTlvai~aa~~l-------~k~tLILvps~~Lv~Q 313 (732)
T TIGR00603 252 PTTQIRPYQEKSLSKMFGN-----------GRARSGIIVLPCGAGKSLVGVTAACTV-------KKSCLVLCTSAVSVEQ 313 (732)
T ss_pred cCCCcCHHHHHHHHHHHhc-----------CCCCCcEEEeCCCCChHHHHHHHHHHh-------CCCEEEEeCcHHHHHH
Confidence 3578999999999998632 233689999999999999999987664 25899999976 5899
Q ss_pred HHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEE
Q 000672 799 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1360)
Q Consensus 799 W~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVI 878 (1360)
|.++|.+|+.- .+..+..+.+..+.. +....+|+|+||+++.+... +.......+..+....|++||
T Consensus 314 W~~ef~~~~~l--~~~~I~~~tg~~k~~-------~~~~~~VvVtTYq~l~~~~~----r~~~~~~~l~~l~~~~~gLII 380 (732)
T TIGR00603 314 WKQQFKMWSTI--DDSQICRFTSDAKER-------FHGEAGVVVSTYSMVAHTGK----RSYESEKVMEWLTNREWGLIL 380 (732)
T ss_pred HHHHHHHhcCC--CCceEEEEecCcccc-------cccCCcEEEEEHHHhhcccc----cchhhhHHHHHhccccCCEEE
Confidence 99999999742 234555555543221 12346899999999864311 111111222233345899999
Q ss_pred EeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhh-hccCCCCChHHHHhhccCCcccCCCCCCChHH
Q 000672 879 CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDF-VREGFLGSSHEFRNRFQNPIENGQHTNSTSED 957 (1360)
Q Consensus 879 lDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~f-L~p~~lgs~~eF~~~f~~pi~~g~~~~st~~~ 957 (1360)
+||||++.+ ....+++..+.+.+||+|||||++++- .+..+.| +.|..+.
T Consensus 381 ~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye------------------------- 431 (732)
T TIGR00603 381 LDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLYE------------------------- 431 (732)
T ss_pred EEccccccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeeee-------------------------
Confidence 999999954 344457778899999999999998762 2333333 2332211
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhhhhh--hcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHH
Q 000672 958 VKIMNQRSHILYEQLKGFVQRMDMNVVK--KDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGY 1035 (1360)
Q Consensus 958 ~~~~~~r~~~L~~~L~~fv~Rrtk~~v~--~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~~~l 1035 (1360)
....++. ..|.+.....|+|+|++.. |..++.... . .+..
T Consensus 432 ---------------------~~~~eLi~~G~LA~~~~~ev~v~~t~~~---~~~yl~~~~-------~---~k~~---- 473 (732)
T TIGR00603 432 ---------------------ANWMELQKKGFIANVQCAEVWCPMTPEF---YREYLRENS-------R---KRML---- 473 (732)
T ss_pred ---------------------cCHHHHHhCCccccceEEEEEecCCHHH---HHHHHHhcc-------h---hhhH----
Confidence 1111111 2466777788999999875 433332110 0 0000
Q ss_pred HHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhccccccc
Q 000672 1036 QALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELD 1115 (1360)
Q Consensus 1036 ~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 1115 (1360)
| . ..
T Consensus 474 --l--~------------------------------------------------------------------------~~ 477 (732)
T TIGR00603 474 --L--Y------------------------------------------------------------------------VM 477 (732)
T ss_pred --H--h------------------------------------------------------------------------hh
Confidence 0 0 01
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
...|+.++..++......++|+||||+++..+..+...|. ...|+|.|+..+|.+++++|+.
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----------------~~~I~G~ts~~ER~~il~~Fr~- 539 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----------------KPFIYGPTSQQERMQILQNFQH- 539 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----------------CceEECCCCHHHHHHHHHHHHh-
Confidence 1368888888888766679999999999998888877653 2358999999999999999986
Q ss_pred CCCCceEEEeecccccccCCccCCCEEEEEcCCC-ChhHHHHHhHhHhhcCCCC-----cEEEEEEecCCCHHHHHHH
Q 000672 1196 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-NPTYDLQAIYRAWRYGQTK-----PVFAYRLMAHGTMEEKIYK 1267 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~W-NPs~~~QAiGRa~RiGQkK-----~V~VyrLva~gTIEEkI~~ 1267 (1360)
++.+++ |+++++|++||||+.|+.||++++++ |+..+.||+||+.|.+..+ +.++|.|++++|.|+..-.
T Consensus 540 -~~~i~v-Lv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 540 -NPKVNT-IFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred -CCCccE-EEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 345554 55569999999999999999999986 9999999999999999764 4799999999999998753
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.5e-31 Score=343.16 Aligned_cols=464 Identities=17% Similarity=0.161 Sum_probs=273.3
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEech-hhHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~-sLl~QW~ 800 (1360)
..+|+||.+.+..+++ .++|++++||+|||++++.++...+.. ..+++|||||. .|+.||.
T Consensus 14 ~~~r~yQ~~~~~~~l~---------------~n~lv~~ptG~GKT~~a~~~i~~~l~~---~~~~vLvl~Pt~~L~~Q~~ 75 (773)
T PRK13766 14 IEARLYQQLLAATALK---------------KNTLVVLPTGLGKTAIALLVIAERLHK---KGGKVLILAPTKPLVEQHA 75 (773)
T ss_pred CCccHHHHHHHHHHhc---------------CCeEEEcCCCccHHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHH
Confidence 3679999998876642 389999999999999998888776632 23689999996 6899999
Q ss_pred HHHHHhCCCCCCCeEEEEecCcch-hHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEE
Q 000672 801 QEFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 879 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V~~~~g~~~-~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIl 879 (1360)
.++.+++.. .+..+..+.|... ..+. ..| ..++|+++|+..+.+..... .+....|++||+
T Consensus 76 ~~~~~~~~~--~~~~v~~~~g~~~~~~r~---~~~-~~~~iiv~T~~~l~~~l~~~------------~~~~~~~~liVv 137 (773)
T PRK13766 76 EFFRKFLNI--PEEKIVVFTGEVSPEKRA---ELW-EKAKVIVATPQVIENDLIAG------------RISLEDVSLLIF 137 (773)
T ss_pred HHHHHHhCC--CCceEEEEeCCCCHHHHH---HHH-hCCCEEEECHHHHHHHHHcC------------CCChhhCcEEEE
Confidence 999998743 2245555555433 2232 223 46789999998876422111 111237899999
Q ss_pred eCCcccCCcchHHHHHHhh---cccceEEEEeCCCCCCchhhHHhhhhhhccCCCCCh----HHHHhhccCCcccCCCCC
Q 000672 880 DEAHMIKNTRADTTQALKQ---VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS----HEFRNRFQNPIENGQHTN 952 (1360)
Q Consensus 880 DEAH~IKN~~Sk~skal~~---Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~----~eF~~~f~~pi~~g~~~~ 952 (1360)
||||++.+..+..+.+-.. .+.+++++|||||..+ ...+..++..|....+... ..+...+..+-.......
T Consensus 138 DEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~ 216 (773)
T PRK13766 138 DEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVE 216 (773)
T ss_pred ECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeC
Confidence 9999998765544332222 2456799999999875 4555555555432211111 111111111100000000
Q ss_pred CChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhc-CCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhH
Q 000672 953 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKD-LPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF 1031 (1360)
Q Consensus 953 st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~-LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~ 1031 (1360)
+......++..|..++.++.+...... +++....+....+...+..++..+... . .........
T Consensus 217 --------l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-----~--~~~~~~~~~ 281 (773)
T PRK13766 217 --------LPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIAND-----D--SEGYEAISI 281 (773)
T ss_pred --------CcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcC-----c--hHHHHHHHH
Confidence 112233455666666665554332211 222221122222333333333322110 0 000001122
Q ss_pred HHHHHHHHHHhcCcchhhhccc---cCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhh
Q 000672 1032 FAGYQALAQIWNHPGILQLTKD---KGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHE 1108 (1360)
Q Consensus 1032 ~~~l~~LRqic~hP~Ll~~~~~---~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~ 1108 (1360)
.+.+..++.... ++..... ..+.......... .........+. ... ... ....
T Consensus 282 ~~~~~~l~~~~~---~l~~~~~~~~~~y~~~l~~~~~~-----------~~~~~~~~~l~----~~~----~~~-~~~~- 337 (773)
T PRK13766 282 LAEAMKLRHAVE---LLETQGVEALRRYLERLREEARS-----------SGGSKASKRLV----EDP----RFR-KAVR- 337 (773)
T ss_pred HHHHHHHHHHHH---HHHHhCHHHHHHHHHHHHhhccc-----------cCCcHHHHHHH----hCH----HHH-HHHH-
Confidence 222222222111 1000000 0000000000000 00000000000 000 000 0000
Q ss_pred ccccccccChhHHHHHHHHHhhh--cCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCC-------
Q 000672 1109 HTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGR------- 1179 (1360)
Q Consensus 1109 ~~~~~~~~S~Kl~~L~eiL~~~~--~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGs------- 1179 (1360)
........++|+..|.++|.+.. ..+.|+||||++..+++.|..+|.. .|+.+..++|.
T Consensus 338 ~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~------------~~~~~~~~~g~~~~~~~~ 405 (773)
T PRK13766 338 KAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK------------EGIKAVRFVGQASKDGDK 405 (773)
T ss_pred HHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh------------CCCceEEEEccccccccC
Confidence 00011244699999999998876 4678999999999999999999975 57778888886
Q ss_pred -CCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecC
Q 000672 1180 -TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1180 -ts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~ 1258 (1360)
++..+|..++.+|+.+ .++ +|++|.++++|+|++.+++||+|||+|||..++|++||++|.|+ +.||.|++.
T Consensus 406 ~~~~~~r~~~~~~F~~g---~~~-vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~ 478 (773)
T PRK13766 406 GMSQKEQIEILDKFRAG---EFN-VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAK 478 (773)
T ss_pred CCCHHHHHHHHHHHHcC---CCC-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeC
Confidence 8889999999999973 444 58899999999999999999999999999999998888888765 678999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 000672 1259 GTMEEKIYKRQVTKEGLAARVV 1280 (1360)
Q Consensus 1259 gTIEEkI~~rq~~K~~La~~Vv 1280 (1360)
+|+||.+|.....|.+.+...+
T Consensus 479 ~t~ee~~y~~~~~ke~~~~~~l 500 (773)
T PRK13766 479 GTRDEAYYWSSRRKEKKMKEEL 500 (773)
T ss_pred CChHHHHHHHhhHHHHHHHHHH
Confidence 9999999999888877774443
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.97 E-value=4.6e-32 Score=337.26 Aligned_cols=278 Identities=18% Similarity=0.257 Sum_probs=199.8
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhc--------------ccCCCceEEEechhhHHHHHHHHHHhCCCCCCCeEEE
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSV--------------NLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVF 817 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~--------------~~~~k~~LIV~P~sLl~QW~~Ei~k~~p~~~~~l~V~ 817 (1360)
|..+++|||||+|||...+++....+... ....|+||||||.+++.||..||.++++.. ++|+
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~---lKv~ 450 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSL---LKVL 450 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhcccc---ceEE
Confidence 34579999999999999888765543211 123579999999999999999999999874 6888
Q ss_pred EecCcchhHHHHHHHHHhhcCCEEEEccccccccccccc-cc-chhh------HHHHHhhhcCCCCEEEEeCCcccCCcc
Q 000672 818 MLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKH-VK-DRNM------AREICHALQDGPDILVCDEAHMIKNTR 889 (1360)
Q Consensus 818 ~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~-~~-~~~~------~~~i~~ll~~~fdlVIlDEAH~IKN~~ 889 (1360)
.|.|........- .-...++|++|||+.+++-.+... .. ++.+ ...-..+....|.+||+|||+.+....
T Consensus 451 ~Y~Girk~~~~~~--~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSP--FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSS 528 (1394)
T ss_pred EEechhhhcccCc--hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchH
Confidence 8887654321111 113578999999999997544331 11 1111 111123444588999999999999999
Q ss_pred hHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHHHHHHHHHHHH
Q 000672 890 ADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILY 969 (1360)
Q Consensus 890 Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~~~~~~~~~r~~~L~ 969 (1360)
|+.++.+.+|.+.++|+.||||||+ +.+++.||.||+..+|+....|.+....++.+. .....+.
T Consensus 529 S~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--------------a~~~~~~ 593 (1394)
T KOG0298|consen 529 SAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--------------AKCEPLL 593 (1394)
T ss_pred HHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--------------hhhhhHH
Confidence 9999999999999999999999999 999999999999999999999987765543321 2334456
Q ss_pred HHHhHHhhhhhhhhhhh--cCCCceEEEEEecCCHHHHHHHHHHH----Hhhcc---------c---c-cccchHHHHhh
Q 000672 970 EQLKGFVQRMDMNVVKK--DLPPKTVFVITVKLSPLQRRLYKRFL----DLHGF---------T---N-DRVSNEKIRKS 1030 (1360)
Q Consensus 970 ~~L~~fv~Rrtk~~v~~--~LP~k~e~vV~v~LS~~Q~~lYe~ll----~~~~~---------~---~-~~~~~~~~~~s 1030 (1360)
..+...+.|+.+..+.. .+||-.+.+....+++.+..+|+..- ..... . . ...........
T Consensus 594 dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~ 673 (1394)
T KOG0298|consen 594 DLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAI 673 (1394)
T ss_pred HHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHH
Confidence 77778888888877765 48998888888888888877775421 11000 0 0 00011122235
Q ss_pred HHHHHHHHHHHhcCcchhh
Q 000672 1031 FFAGYQALAQIWNHPGILQ 1049 (1360)
Q Consensus 1031 ~~~~l~~LRqic~hP~Ll~ 1049 (1360)
+...+.+||++|+||....
T Consensus 674 i~~~l~rLRq~Cchplv~~ 692 (1394)
T KOG0298|consen 674 ILKWLLRLRQACCHPLVGN 692 (1394)
T ss_pred HHHHHHHHHHhhccccccc
Confidence 6778889999999997654
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.5e-27 Score=277.03 Aligned_cols=468 Identities=19% Similarity=0.177 Sum_probs=266.7
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHHHH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQ 801 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW~~ 801 (1360)
.-|.||..-+.-.+ ..+++++-++|||||+.|+.++...++... +++|+++| +.|+.|-..
T Consensus 15 e~R~YQ~~i~a~al---------------~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~---~kvlfLAPTKPLV~Qh~~ 76 (542)
T COG1111 15 EPRLYQLNIAAKAL---------------FKNTLVVLPTGLGKTFIAAMVIANRLRWFG---GKVLFLAPTKPLVLQHAE 76 (542)
T ss_pred cHHHHHHHHHHHHh---------------hcCeEEEecCCccHHHHHHHHHHHHHHhcC---CeEEEecCCchHHHHHHH
Confidence 45789988776554 258999999999999999998887776643 38999999 569999999
Q ss_pred HHHHhCCCCCCCeEEEEecCcchh-HHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEe
Q 000672 802 EFMKWRPSELKPLRVFMLEDVSRD-RRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 880 (1360)
Q Consensus 802 Ei~k~~p~~~~~l~V~~~~g~~~~-~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlD 880 (1360)
-+.+.+.- .+-.+..+.|..+. .|.. .| ....|++.|++++.|......+. ...+.++|+|
T Consensus 77 ~~~~v~~i--p~~~i~~ltGev~p~~R~~---~w-~~~kVfvaTPQvveNDl~~Grid------------~~dv~~lifD 138 (542)
T COG1111 77 FCRKVTGI--PEDEIAALTGEVRPEEREE---LW-AKKKVFVATPQVVENDLKAGRID------------LDDVSLLIFD 138 (542)
T ss_pred HHHHHhCC--ChhheeeecCCCChHHHHH---HH-hhCCEEEeccHHHHhHHhcCccC------------hHHceEEEec
Confidence 99998743 33456666665443 3443 34 46789999999987643221111 1267899999
Q ss_pred CCcccCCcchHHHHHH--hhc-ccceEEEEeCCCCCCchhhHHhhhhhhccCCC---CChHHHHhhccCCcccCCCCCCC
Q 000672 881 EAHMIKNTRADTTQAL--KQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFL---GSSHEFRNRFQNPIENGQHTNST 954 (1360)
Q Consensus 881 EAH~IKN~~Sk~skal--~~L-ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~l---gs~~eF~~~f~~pi~~g~~~~st 954 (1360)
|||+.-+..+-.+-+= .+- +..+.++||||| -+++..+-..++-|..+-. .....=...|...+.-....-..
T Consensus 139 EAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~l 217 (542)
T COG1111 139 EAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDL 217 (542)
T ss_pred hhhhccCcchHHHHHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccC
Confidence 9999987665444332 222 556799999999 4455556555555543311 00000011121111111111011
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHH-hhHHH
Q 000672 955 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIR-KSFFA 1033 (1360)
Q Consensus 955 ~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~-~s~~~ 1033 (1360)
... +......|..++++.+..-. + .-.+....+. .++++........... ......... -+.++
T Consensus 218 p~e---~~~ir~~l~~~l~~~Lk~L~------~---~g~~~~~~~~--~~kdl~~~~~~~~~~a-~~~~~~~~~~l~~~a 282 (542)
T COG1111 218 PEE---IKEIRDLLRDALKPRLKPLK------E---LGVIESSSPV--SKKDLLELRQIRLIMA-KNEDSDKFRLLSVLA 282 (542)
T ss_pred cHH---HHHHHHHHHHHHHHHHHHHH------H---cCceeccCcc--cHhHHHHHHHHHHHhc-cCccHHHHHHHHHHH
Confidence 111 11112222333332221100 0 0011111111 1222222220100000 000000000 01222
Q ss_pred HHHHHHHHhcCcchhhhccc---cCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcc
Q 000672 1034 GYQALAQIWNHPGILQLTKD---KGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHT 1110 (1360)
Q Consensus 1034 ~l~~LRqic~hP~Ll~~~~~---~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~ 1110 (1360)
.+.++..+.. ++....- ..|. +...+. . . .........+. .+..+... ...+.. .
T Consensus 283 ~~~kl~~a~e---lletqGi~~~~~Yl--~~l~e~---~------~-~~~sk~a~~l~----~d~~~~~a-l~~~~~-~- 340 (542)
T COG1111 283 EAIKLAHALE---LLETQGIRPFYQYL--EKLEEE---A------T-KGGSKAAKSLL----ADPYFKRA-LRLLIR-A- 340 (542)
T ss_pred HHHHHHHHHH---HHHhhChHHHHHHH--HHHHHH---h------c-ccchHHHHHHh----cChhhHHH-HHHHHH-h-
Confidence 2222221110 1100000 0000 000000 0 0 00000000000 00011000 000000 0
Q ss_pred ccccccChhHHHHHHHHHhhh--cCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEE-Eec--------CC
Q 000672 1111 YKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWY-RLD--------GR 1179 (1360)
Q Consensus 1111 ~~~~~~S~Kl~~L~eiL~~~~--~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~-rLd--------Gs 1179 (1360)
...--..|||..+.++|++.. ..+.+||||++|+++++.|..+|...+ +... ++- -+
T Consensus 341 ~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~------------~~~~~rFiGQa~r~~~~G 408 (542)
T COG1111 341 DESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIG------------IKARVRFIGQASREGDKG 408 (542)
T ss_pred ccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcC------------CcceeEEeeccccccccc
Confidence 111234699999999999877 456899999999999999999999743 2221 333 35
Q ss_pred CCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCC
Q 000672 1180 TESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 1259 (1360)
Q Consensus 1180 ts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~g 1259 (1360)
|++++..+++++|+. +.+. +|++|.+|.+||+++..+.||+|||.-+|.+.+||.||.+| ++.-+||-|+++|
T Consensus 409 MsQkeQ~eiI~~Fr~---Ge~n-VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~g 481 (542)
T COG1111 409 MSQKEQKEIIDQFRK---GEYN-VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEG 481 (542)
T ss_pred cCHHHHHHHHHHHhc---CCce-EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecC
Confidence 899999999999997 4555 58999999999999999999999999999999999999988 4778899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccc
Q 000672 1260 TMEEKIYKRQVTKEGLAARVVDRQ 1283 (1360)
Q Consensus 1260 TIEEkI~~rq~~K~~La~~Vvd~~ 1283 (1360)
|-|+.-|.....|.+-+...+.+.
T Consensus 482 trdeayy~~s~rke~~m~e~i~~~ 505 (542)
T COG1111 482 TRDEAYYYSSRRKEQKMIESIRGL 505 (542)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987776666543
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=2.6e-25 Score=269.66 Aligned_cols=369 Identities=17% Similarity=0.223 Sum_probs=258.9
Q ss_pred cchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hH
Q 000672 718 SSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VL 796 (1360)
Q Consensus 718 ~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll 796 (1360)
......|||||.+++.-++.... . ...|++..++|.|||+.++.++..+ ..++|||||.. |+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~---------~-~~~gvivlpTGaGKT~va~~~~~~~-------~~~~Lvlv~~~~L~ 93 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRR---------T-ERRGVIVLPTGAGKTVVAAEAIAEL-------KRSTLVLVPTKELL 93 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcc---------c-CCceEEEeCCCCCHHHHHHHHHHHh-------cCCEEEEECcHHHH
Confidence 45567899999999988765321 2 6789999999999999999988776 23599999955 89
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCE
Q 000672 797 HNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDI 876 (1360)
Q Consensus 797 ~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdl 876 (1360)
.||.+.+.+++... -.+..+.+.... +.. ..|.++||+++.... .+..+....|++
T Consensus 94 ~Qw~~~~~~~~~~~---~~~g~~~~~~~~--------~~~-~~i~vat~qtl~~~~------------~l~~~~~~~~~l 149 (442)
T COG1061 94 DQWAEALKKFLLLN---DEIGIYGGGEKE--------LEP-AKVTVATVQTLARRQ------------LLDEFLGNEFGL 149 (442)
T ss_pred HHHHHHHHHhcCCc---cccceecCceec--------cCC-CcEEEEEhHHHhhhh------------hhhhhcccccCE
Confidence 99998888887542 123333333221 111 469999999876410 123334447999
Q ss_pred EEEeCCcccCCcchHHHHHHhhcccce-EEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCCh
Q 000672 877 LVCDEAHMIKNTRADTTQALKQVKCQR-RIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTS 955 (1360)
Q Consensus 877 VIlDEAH~IKN~~Sk~skal~~Lka~~-RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~ 955 (1360)
||+||+||+-.+... ..+..+...+ +++|||||...+......++.++.|
T Consensus 150 iI~DE~Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~--------------------------- 200 (442)
T COG1061 150 IIFDEVHHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGP--------------------------- 200 (442)
T ss_pred EEEEccccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhHHHHhcCC---------------------------
Confidence 999999999654332 3344455666 9999999975543333333333322
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhhhh-h-hcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHH
Q 000672 956 EDVKIMNQRSHILYEQLKGFVQRMDMNVV-K-KDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFA 1033 (1360)
Q Consensus 956 ~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v-~-~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~~ 1033 (1360)
.+......+. . ..|.|.....+.+.++......|.......... +.
T Consensus 201 -------------------~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~-------------~~ 248 (442)
T COG1061 201 -------------------IVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFREL-------------LR 248 (442)
T ss_pred -------------------eEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhh-------------hh
Confidence 1222222222 1 358889999999999999888887654321100 00
Q ss_pred HHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhccccc
Q 000672 1034 GYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKE 1113 (1360)
Q Consensus 1034 ~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~ 1113 (1360)
.... +... .+ .....
T Consensus 249 ~~~~---------~~~~-------------------------------------------------~~-------~~~~~ 263 (442)
T COG1061 249 ARGT---------LRAE-------------------------------------------------NE-------ARRIA 263 (442)
T ss_pred hhhh---------hhHH-------------------------------------------------HH-------HHHHh
Confidence 0000 0000 00 00001
Q ss_pred cccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHh
Q 000672 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 1193 (1360)
Q Consensus 1114 ~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn 1193 (1360)
.....|+..+..++.... .+.+++||+.+..++..|...|.. .|+ ...++|.++..+|..++++|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~------------~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 264 IASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLA------------PGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcC------------CCc-eEEEECCCCHHHHHHHHHHHH
Confidence 123467778888887665 789999999999999999999985 455 889999999999999999999
Q ss_pred CCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhc-CCCCc--EEEEEEecCCCHHHHHHHHHH
Q 000672 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY-GQTKP--VFAYRLMAHGTMEEKIYKRQV 1270 (1360)
Q Consensus 1194 ~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~Ri-GQkK~--V~VyrLva~gTIEEkI~~rq~ 1270 (1360)
.+. +. +|++++++.+|+|++.|+.+|++.|.-++..+.|++||+.|. ..+.. ++.|-++..++.+..+.....
T Consensus 330 ~g~---~~-~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 330 TGG---IK-VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred cCC---CC-EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 743 33 699999999999999999999999999999999999999994 44444 778888899998888776655
Q ss_pred H
Q 000672 1271 T 1271 (1360)
Q Consensus 1271 ~ 1271 (1360)
.
T Consensus 406 ~ 406 (442)
T COG1061 406 L 406 (442)
T ss_pred h
Confidence 4
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=2.3e-25 Score=274.83 Aligned_cols=336 Identities=14% Similarity=0.169 Sum_probs=222.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEech-hhHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~-sLl~QW~ 800 (1360)
..|+|||.+++..++. +..+|+..++|+|||+++++++....... ..++|||||. .|+.||.
T Consensus 113 ~~~r~~Q~~av~~~l~--------------~~~~il~apTGsGKT~i~~~l~~~~~~~~---~~~vLilvpt~eL~~Q~~ 175 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK--------------NNRRLLNLPTSAGKSLIQYLLSRYYLENY---EGKVLIIVPTTSLVTQMI 175 (501)
T ss_pred CCCCHHHHHHHHHHHh--------------cCceEEEeCCCCCHHHHHHHHHHHHHhcC---CCeEEEEECcHHHHHHHH
Confidence 5899999999976642 35689999999999998876654433321 2389999995 5999999
Q ss_pred HHHHHhCCCCCCCeEE-EEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEE
Q 000672 801 QEFMKWRPSELKPLRV-FMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 879 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V-~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIl 879 (1360)
++|.+|.... ...+ ..+.|.... ....|+|+|++++.... .. ....|++||+
T Consensus 176 ~~l~~~~~~~--~~~~~~i~~g~~~~----------~~~~I~VaT~qsl~~~~--------------~~-~~~~~~~iIv 228 (501)
T PHA02558 176 DDFVDYRLFP--REAMHKIYSGTAKD----------TDAPIVVSTWQSAVKQP--------------KE-WFDQFGMVIV 228 (501)
T ss_pred HHHHHhcccc--ccceeEEecCcccC----------CCCCEEEeeHHHHhhch--------------hh-hccccCEEEE
Confidence 9999986321 1222 223332211 34689999998764311 01 1237899999
Q ss_pred eCCcccCCcchHHHHHHhhc-ccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 000672 880 DEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 958 (1360)
Q Consensus 880 DEAH~IKN~~Sk~skal~~L-ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~~~~ 958 (1360)
||||++... .....+..+ +++++++|||||..... ..+.+..++.| +..
T Consensus 229 DEaH~~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~-~~~~~~~~fG~----------------i~~----------- 278 (501)
T PHA02558 229 DECHLFTGK--SLTSIITKLDNCKFKFGLTGSLRDGKA-NILQYVGLFGD----------------IFK----------- 278 (501)
T ss_pred Echhcccch--hHHHHHHhhhccceEEEEeccCCCccc-cHHHHHHhhCC----------------ceE-----------
Confidence 999999653 344556666 67899999999953221 11111111111 100
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhhhhh--hcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHH
Q 000672 959 KIMNQRSHILYEQLKGFVQRMDMNVVK--KDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQ 1036 (1360)
Q Consensus 959 ~~~~~r~~~L~~~L~~fv~Rrtk~~v~--~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~~~l~ 1036 (1360)
+.+..++. ..+.+.....+.+..++.....+. .. .+-..
T Consensus 279 -------------------~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~--------------~~----~~~~~-- 319 (501)
T PHA02558 279 -------------------PVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLK--------------GE----DYQEE-- 319 (501)
T ss_pred -------------------EecHHHHHhCCCcCCceEEEEeccCCHHHhhhhc--------------cc----chHHH--
Confidence 00000000 112222333344444432111000 00 00000
Q ss_pred HHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcccccccc
Q 000672 1037 ALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDY 1116 (1360)
Q Consensus 1037 ~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 1116 (1360)
+..+ ...
T Consensus 320 -~~~l------------------------------------------------------------------------~~~ 326 (501)
T PHA02558 320 -IKYI------------------------------------------------------------------------TSH 326 (501)
T ss_pred -HHHH------------------------------------------------------------------------hcc
Confidence 0000 011
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..|..++.+++..+...+.++|||+..+.+++.|...|.. .|+++..++|+++.++|..+++.|+.
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~------------~g~~v~~i~G~~~~~eR~~i~~~~~~-- 392 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKK------------VYDKVYYVSGEVDTEDRNEMKKIAEG-- 392 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHH------------cCCCEEEEeCCCCHHHHHHHHHHHhC--
Confidence 2455666677766667788999999999999999999986 57899999999999999999999985
Q ss_pred CCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCC-cEEEEEEecC
Q 000672 1197 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTK-PVFAYRLMAH 1258 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK-~V~VyrLva~ 1258 (1360)
+..+|+|.|++..++|+|++.+++||++.|+.+...+.|++||++|.|..| .+.||.|+-.
T Consensus 393 -~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~ 454 (501)
T PHA02558 393 -GKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDD 454 (501)
T ss_pred -CCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecc
Confidence 445566667799999999999999999999999999999999999998775 5899999854
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.6e-23 Score=239.84 Aligned_cols=361 Identities=20% Similarity=0.331 Sum_probs=246.4
Q ss_pred CcccccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEE
Q 000672 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 790 (1360)
Q Consensus 711 ~~~v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV 790 (1360)
.+.+.+.-.-...|||||...++-|.-+ ...+.||+..+.|.|||+..|+.+.+. .+.+||+
T Consensus 290 npdl~idLKPst~iRpYQEksL~KMFGN-----------gRARSGiIVLPCGAGKtLVGvTAa~ti-------kK~clvL 351 (776)
T KOG1123|consen 290 NPDLDIDLKPSTQIRPYQEKSLSKMFGN-----------GRARSGIIVLPCGAGKTLVGVTAACTI-------KKSCLVL 351 (776)
T ss_pred CCCCCcCcCcccccCchHHHHHHHHhCC-----------CcccCceEEEecCCCCceeeeeeeeee-------cccEEEE
Confidence 3444455555688999999999999643 345779999999999999988877664 3689999
Q ss_pred echhh-HHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhh
Q 000672 791 TPVNV-LHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869 (1360)
Q Consensus 791 ~P~sL-l~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~l 869 (1360)
|..++ +.||+.+|..|..- .+-.+..+....+. .+....+|+|+||.|+..-. .+. .-...+..+
T Consensus 352 cts~VSVeQWkqQfk~wsti--~d~~i~rFTsd~Ke-------~~~~~~gvvvsTYsMva~t~----kRS-~eaek~m~~ 417 (776)
T KOG1123|consen 352 CTSAVSVEQWKQQFKQWSTI--QDDQICRFTSDAKE-------RFPSGAGVVVTTYSMVAYTG----KRS-HEAEKIMDF 417 (776)
T ss_pred ecCccCHHHHHHHHHhhccc--CccceEEeeccccc-------cCCCCCcEEEEeeehhhhcc----ccc-HHHHHHHHH
Confidence 98775 99999999999743 22334444332221 12456789999999986421 111 122334444
Q ss_pred hc-CCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhh-ccCCCCC-hHHHHhhccCCcc
Q 000672 870 LQ-DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV-REGFLGS-SHEFRNRFQNPIE 946 (1360)
Q Consensus 870 l~-~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL-~p~~lgs-~~eF~~~f~~pi~ 946 (1360)
+. ..|+++|+||.|.+ +....-+.+.-+.+..+++||||-+..+ |-..=|+|| .|.++.. +.+..
T Consensus 418 l~~~EWGllllDEVHvv--PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEAnWmdL~-------- 485 (776)
T KOG1123|consen 418 LRGREWGLLLLDEVHVV--PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEANWMDLQ-------- 485 (776)
T ss_pred HhcCeeeeEEeehhccc--hHHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhhccHHHHH--------
Confidence 44 49999999999988 4344444555568899999999987653 222223443 3443321 00000
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHH
Q 000672 947 NGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEK 1026 (1360)
Q Consensus 947 ~g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~ 1026 (1360)
-++ .+....-..|+|+||++ +|+.|+....
T Consensus 486 -------------------------~kG------------hIA~VqCaEVWCpMt~e---Fy~eYL~~~t---------- 515 (776)
T KOG1123|consen 486 -------------------------KKG------------HIAKVQCAEVWCPMTPE---FYREYLRENT---------- 515 (776)
T ss_pred -------------------------hCC------------ceeEEeeeeeecCCCHH---HHHHHHhhhh----------
Confidence 001 22333445699999985 5665554211
Q ss_pred HHhhHHHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhh
Q 000672 1027 IRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLL 1106 (1360)
Q Consensus 1027 ~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll 1106 (1360)
++.. |+.
T Consensus 516 -~kr~---------------lLy--------------------------------------------------------- 522 (776)
T KOG1123|consen 516 -RKRM---------------LLY--------------------------------------------------------- 522 (776)
T ss_pred -hhhh---------------eee---------------------------------------------------------
Confidence 0000 000
Q ss_pred hhccccccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHH
Q 000672 1107 HEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQ 1186 (1360)
Q Consensus 1107 ~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~ 1186 (1360)
+-+..|+.+..=+|+-...+|+|+||||..+-.|...+--|.+ -.|.|.|++.+|.
T Consensus 523 -------vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----------------pfIYG~Tsq~ERm 578 (776)
T KOG1123|consen 523 -------VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----------------PFIYGPTSQNERM 578 (776)
T ss_pred -------ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----------------ceEECCCchhHHH
Confidence 0113577777777777778999999999988877665544443 2578999999999
Q ss_pred HHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCC-ChhHHHHHhHhHhhcCCC----CcEEEEEEecCCCH
Q 000672 1187 KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-NPTYDLQAIYRAWRYGQT----KPVFAYRLMAHGTM 1261 (1360)
Q Consensus 1187 ~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~W-NPs~~~QAiGRa~RiGQk----K~V~VyrLva~gTI 1261 (1360)
+++..|+. |+.+.-+.+ +++|...|+|+.||.+|-...+. +-..+.||.|||.|---. -+++.|-|+.++|.
T Consensus 579 ~ILqnFq~--n~~vNTIFl-SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 579 KILQNFQT--NPKVNTIFL-SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred HHHHhccc--CCccceEEE-eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 99999998 566664555 48999999999999999998877 556788999999996522 35899999999999
Q ss_pred HHHH
Q 000672 1262 EEKI 1265 (1360)
Q Consensus 1262 EEkI 1265 (1360)
|-..
T Consensus 656 EM~Y 659 (776)
T KOG1123|consen 656 EMYY 659 (776)
T ss_pred HHHh
Confidence 8543
No 28
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.91 E-value=8.4e-22 Score=241.41 Aligned_cols=464 Identities=15% Similarity=0.150 Sum_probs=256.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~ 800 (1360)
..||+||.+-++-.+ +.++|+|.+||+|||+.|+.++..+++.... +++++.+|.. |+.|-.
T Consensus 61 ~~lR~YQ~eivq~AL---------------gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~--~KiVF~aP~~pLv~QQ~ 123 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL---------------GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK--GKVVFLAPTRPLVNQQI 123 (746)
T ss_pred ccccHHHHHHhHHhh---------------cCCeEEEeecCCCccchHHHHHHHHHhcCCc--ceEEEeeCCchHHHHHH
Confidence 469999999998663 6899999999999999999999888887654 6999999965 778888
Q ss_pred HHHHHhCCCCCCCeEEEEecC--cchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEE
Q 000672 801 QEFMKWRPSELKPLRVFMLED--VSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V~~~~g--~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVI 878 (1360)
..+..++-. ..+....+ ..+..+.. .| ...+|+++|.+.+.+......... ...|.++|
T Consensus 124 a~~~~~~~~----~~~T~~l~~~~~~~~r~~---i~-~s~~vff~TpQil~ndL~~~~~~~-----------ls~fs~iv 184 (746)
T KOG0354|consen 124 ACFSIYLIP----YSVTGQLGDTVPRSNRGE---IV-ASKRVFFRTPQILENDLKSGLHDE-----------LSDFSLIV 184 (746)
T ss_pred HHHhhccCc----ccceeeccCccCCCchhh---hh-cccceEEeChHhhhhhcccccccc-----------cceEEEEE
Confidence 888777633 23333322 23334432 23 456899999999886432211110 12588999
Q ss_pred EeCCcccCCc--chHHHHHHhhc--ccceEEEEeCCCCCCchhhHHhhhhhhccCCCCCh--HHHHhhccCCcccCCCCC
Q 000672 879 CDEAHMIKNT--RADTTQALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS--HEFRNRFQNPIENGQHTN 952 (1360)
Q Consensus 879 lDEAH~IKN~--~Sk~skal~~L--ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~--~eF~~~f~~pi~~g~~~~ 952 (1360)
+||||+.... .+.+.+.+..+ ...+.|+|||||= ++...+...+.=|... +.-. ..-...|.. ......
T Consensus 185 ~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~---lr~~~~ 259 (746)
T KOG0354|consen 185 FDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEE---LREHVQ 259 (746)
T ss_pred EcccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHH---HhccCc
Confidence 9999998643 34455444444 3447899999997 6666666655544433 2111 001111110 000000
Q ss_pred CChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecC--CHHHHHHHHHHHHhhcccccccchHHHHhh
Q 000672 953 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKL--SPLQRRLYKRFLDLHGFTNDRVSNEKIRKS 1030 (1360)
Q Consensus 953 st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~L--S~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s 1030 (1360)
....-..........|...+.|++.+.... .|++.....-.... ...+...|... ..... .
T Consensus 260 i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~q~---~ 322 (746)
T KOG0354|consen 260 IPVDLSLCERDIEDPFGMIIEPLLQQLQEE----GLIEISDKSTSYEQWVVQAEKAAAPNG----------PENQR---N 322 (746)
T ss_pred ccCcHHHhhhhhhhhHHHHHHHHHHHHHhc----CccccccccccccchhhhhhhhhccCC----------Cccch---h
Confidence 000011112233445666667766654422 22222111100011 11111111000 00000 0
Q ss_pred HHHHHHHHH----HHhcCc-chhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhh
Q 000672 1031 FFAGYQALA----QIWNHP-GILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDL 1105 (1360)
Q Consensus 1031 ~~~~l~~LR----qic~hP-~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~l 1105 (1360)
.|..+..+. .+.+|- ..+. .. ....+-.+..... . .+.... .......+...
T Consensus 323 ~f~~~~~~~~~~~ll~~~gir~~~-~l-------~~~~~f~~e~~~~------k---~~~~~~------e~~~~~~~~~~ 379 (746)
T KOG0354|consen 323 CFYALHLRKYNLALLISDGIRFVD-AL-------DYLEDFYEEVALK------K---YLKLEL------EARLIRNFTEN 379 (746)
T ss_pred hHHHHHHHHHHHHHHhhcchhhHH-HH-------hhhhhhccccchh------H---HHHHHh------cchhhHHHHHH
Confidence 022111111 111111 0000 00 0000000000000 0 000000 00000000000
Q ss_pred hh---hccccccccChhHHHHHHHHHhhhcC--CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEec---
Q 000672 1106 LH---EHTYKELDYSGKMVLLLDILTMCSNM--GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD--- 1177 (1360)
Q Consensus 1106 l~---~~~~~~~~~S~Kl~~L~eiL~~~~~~--g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLd--- 1177 (1360)
.. ..........+|++.|.++|.+.... ..++|||+.++..+..|..+|.....+ |++...+-
T Consensus 380 m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~---------~ir~~~fiGq~ 450 (746)
T KOG0354|consen 380 MNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHEL---------GIKAEIFIGQG 450 (746)
T ss_pred HHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhc---------ccccceeeecc
Confidence 00 00111113579999999999876543 569999999999999999999853322 22222222
Q ss_pred -----CCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEE
Q 000672 1178 -----GRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 1252 (1360)
Q Consensus 1178 -----Gsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~V 1252 (1360)
-+|++.+.+.+++.|++ |.++ +||+|.+|.||||+..+|-||.||..-||..++||+|| +| ++.-.+
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~---G~~N-vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~ 522 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRD---GEIN-VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKC 522 (746)
T ss_pred ccccccccCHHHHHHHHHHHhC---CCcc-EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc---ccCCeE
Confidence 36788899999999997 5555 68999999999999999999999999999999999999 67 555555
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 000672 1253 YRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ 1284 (1360)
Q Consensus 1253 yrLva~gTIEEkI~~rq~~K~~La~~Vvd~~~ 1284 (1360)
+-|.+ |.=+-.--..+..|..++...+..-+
T Consensus 523 vll~t-~~~~~~~E~~~~~~e~lm~~~i~~~q 553 (746)
T KOG0354|consen 523 VLLTT-GSEVIEFERNNLAKEKLMNQTISKIQ 553 (746)
T ss_pred EEEEc-chhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555 43333333345566666666655443
No 29
>PTZ00110 helicase; Provisional
Probab=99.88 E-value=9.9e-21 Score=235.62 Aligned_cols=125 Identities=22% Similarity=0.238 Sum_probs=109.0
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..|...|.++|..+...+.++|||++....++.|...|.. .|+....++|+++..+|..+++.|++
T Consensus 360 ~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~------------~g~~~~~ihg~~~~~eR~~il~~F~~-- 425 (545)
T PTZ00110 360 HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRL------------DGWPALCIHGDKKQEERTWVLNEFKT-- 425 (545)
T ss_pred hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHH------------cCCcEEEEECCCcHHHHHHHHHHHhc--
Confidence 3567777888877766788999999999999999999985 57888999999999999999999997
Q ss_pred CCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCC
Q 000672 1197 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 1259 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~g 1259 (1360)
+.++ +||+|.++++|||++.+++||+||+|+++..+.||+||++|.|.+-.+ |.|++.+
T Consensus 426 -G~~~-ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 426 -GKSP-IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred -CCCc-EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 4444 589999999999999999999999999999999999999999986444 5556654
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=4e-20 Score=227.00 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=95.2
Q ss_pred CCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccc
Q 000672 1133 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1212 (1360)
Q Consensus 1133 ~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGge 1212 (1360)
.+.++|||+.....++.+...|.. .|+....++|+++..+|..+++.|.. +.++ +|++|.+.|.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~------------~g~~~~~~H~~l~~~eR~~i~~~F~~---g~~~-vLVaT~~~~~ 288 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQN------------LGIAAGAYHAGLEISARDDVHHKFQR---DEIQ-VVVATVAFGM 288 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHh------------cCCCeeEeeCCCCHHHHHHHHHHHHc---CCCc-EEEEechhhc
Confidence 366789999999999999999986 58899999999999999999999996 4555 5889999999
Q ss_pred cCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEE
Q 000672 1213 GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 1253 (1360)
Q Consensus 1213 GLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~Vy 1253 (1360)
|||++.++.||+|++|.++..+.|++||++|.|+...+.+|
T Consensus 289 GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 289 GINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 99999999999999999999999999999999988766654
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.87 E-value=5e-20 Score=224.18 Aligned_cols=117 Identities=24% Similarity=0.355 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCC
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n 1197 (1360)
.|+.+|..++.. ....++|||+.....++.|...|.. .|+....++|+++..+|..+++.|++
T Consensus 231 ~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~------------~~~~~~~l~g~~~~~~R~~~l~~f~~--- 293 (434)
T PRK11192 231 HKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRK------------AGINCCYLEGEMVQAKRNEAIKRLTD--- 293 (434)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHh------------CCCCEEEecCCCCHHHHHHHHHHHhC---
Confidence 466667776653 2357999999999999999999986 58899999999999999999999996
Q ss_pred CCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEE
Q 000672 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 1252 (1360)
Q Consensus 1198 ~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~V 1252 (1360)
+.++ +|++|.+++.|||++.+++||+||+|+++..+.|++||++|.|..-.+.+
T Consensus 294 G~~~-vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 294 GRVN-VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CCCc-EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 4555 68899999999999999999999999999999999999999998755544
No 32
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.87 E-value=1.7e-20 Score=232.56 Aligned_cols=324 Identities=16% Similarity=0.180 Sum_probs=210.6
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHh-c-----ccCCCceEEEechh-
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS-V-----NLGLRTALIVTPVN- 794 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~-~-----~~~~k~~LIV~P~s- 794 (1360)
..+.|+|.+++..++ .+...|+..++|.|||+..+..+...+.. . ......+|||+|..
T Consensus 142 ~~ptpiQ~~aip~il--------------~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTre 207 (518)
T PLN00206 142 EFPTPIQMQAIPAAL--------------SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRE 207 (518)
T ss_pred CCCCHHHHHHHHHHh--------------cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHH
Confidence 457899999998774 36789999999999998866544332211 0 11234799999955
Q ss_pred hHHHHHHHHHHhCCCCCCCeEEEE-ecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCC
Q 000672 795 VLHNWKQEFMKWRPSELKPLRVFM-LEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873 (1360)
Q Consensus 795 Ll~QW~~Ei~k~~p~~~~~l~V~~-~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~ 873 (1360)
|+.|+.+++..+... .++++.. +.|...... +.......+|+|+|++.+..+.... ......
T Consensus 208 La~Qi~~~~~~l~~~--~~~~~~~~~gG~~~~~q---~~~l~~~~~IiV~TPgrL~~~l~~~------------~~~l~~ 270 (518)
T PLN00206 208 LCVQVEDQAKVLGKG--LPFKTALVVGGDAMPQQ---LYRIQQGVELIVGTPGRLIDLLSKH------------DIELDN 270 (518)
T ss_pred HHHHHHHHHHHHhCC--CCceEEEEECCcchHHH---HHHhcCCCCEEEECHHHHHHHHHcC------------Cccchh
Confidence 888999888887643 1234333 333332222 2223356789999998765432111 111236
Q ss_pred CCEEEEeCCcccCCc--chHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCC
Q 000672 874 PDILVCDEAHMIKNT--RADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT 951 (1360)
Q Consensus 874 fdlVIlDEAH~IKN~--~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~ 951 (1360)
..+||+||||++-.. .....+.+..+.....+++|||.-. .+.. +...+.
T Consensus 271 v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~-~v~~------------------l~~~~~--------- 322 (518)
T PLN00206 271 VSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP-EVEK------------------FASSLA--------- 322 (518)
T ss_pred eeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH-HHHH------------------HHHHhC---------
Confidence 788999999998543 3445556666777889999999622 1000 000000
Q ss_pred CCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhH
Q 000672 952 NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF 1031 (1360)
Q Consensus 952 ~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~ 1031 (1360)
... ..+.+.-.. . ..
T Consensus 323 -------------------------------------~~~--~~i~~~~~~------------------~-~~------- 337 (518)
T PLN00206 323 -------------------------------------KDI--ILISIGNPN------------------R-PN------- 337 (518)
T ss_pred -------------------------------------CCC--EEEEeCCCC------------------C-CC-------
Confidence 000 000000000 0 00
Q ss_pred HHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhccc
Q 000672 1032 FAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTY 1111 (1360)
Q Consensus 1032 ~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~ 1111 (1360)
..+ . . ..
T Consensus 338 -------------~~v------------------------~-------------q-----------------------~~ 344 (518)
T PLN00206 338 -------------KAV------------------------K-------------Q-----------------------LA 344 (518)
T ss_pred -------------cce------------------------e-------------E-----------------------EE
Confidence 000 0 0 00
Q ss_pred cccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHH
Q 000672 1112 KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVER 1191 (1360)
Q Consensus 1112 ~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~ 1191 (1360)
.......|...|.++|........++|||+.....++.|...|.. ..|+.+..++|+++..+|..+++.
T Consensus 345 ~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~-----------~~g~~~~~~Hg~~~~~eR~~il~~ 413 (518)
T PLN00206 345 IWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV-----------VTGLKALSIHGEKSMKERREVMKS 413 (518)
T ss_pred EeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh-----------ccCcceEEeeCCCCHHHHHHHHHH
Confidence 000112345556666665444456899999999999999999974 257889999999999999999999
Q ss_pred HhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCC
Q 000672 1192 FNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 1259 (1360)
Q Consensus 1192 Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~g 1259 (1360)
|.. +.++ +|++|.+++.|||++.+++||+||+|.++..+.|++||++|.|..- .+|.|+..+
T Consensus 414 Fr~---G~~~-ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 414 FLV---GEVP-VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred HHC---CCCC-EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 996 4455 5899999999999999999999999999999999999999999753 444566543
No 33
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.87 E-value=3.5e-20 Score=227.10 Aligned_cols=321 Identities=16% Similarity=0.201 Sum_probs=210.9
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~ 800 (1360)
..+.|+|.+++..++ .+...|+..++|.|||+..+..+...+..... ...+||+||.. |+.||.
T Consensus 25 ~~~t~iQ~~ai~~~l--------------~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~-~~~~lil~PtreLa~Q~~ 89 (460)
T PRK11776 25 TEMTPIQAQSLPAIL--------------AGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRF-RVQALVLCPTRELADQVA 89 (460)
T ss_pred CCCCHHHHHHHHHHh--------------cCCCEEEECCCCCcHHHHHHHHHHHHhhhccC-CceEEEEeCCHHHHHHHH
Confidence 347899999998774 36789999999999998755544444332221 23689999955 888999
Q ss_pred HHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEe
Q 000672 801 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 880 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlD 880 (1360)
+++.++... ...+++..+.|...... ....+....+|+|+|++.+..+.... .+....+++||+|
T Consensus 90 ~~~~~~~~~-~~~~~v~~~~Gg~~~~~--~~~~l~~~~~IvV~Tp~rl~~~l~~~------------~~~l~~l~~lViD 154 (460)
T PRK11776 90 KEIRRLARF-IPNIKVLTLCGGVPMGP--QIDSLEHGAHIIVGTPGRILDHLRKG------------TLDLDALNTLVLD 154 (460)
T ss_pred HHHHHHHhh-CCCcEEEEEECCCChHH--HHHHhcCCCCEEEEChHHHHHHHHcC------------CccHHHCCEEEEE
Confidence 999887532 12366666655433221 12233456789999998775432110 0111267899999
Q ss_pred CCcccCCcc--hHHHHHHhhc-ccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCChHH
Q 000672 881 EAHMIKNTR--ADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 957 (1360)
Q Consensus 881 EAH~IKN~~--Sk~skal~~L-ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~~~ 957 (1360)
|||++-... ......+..+ .....+++|||+-. . +.. +
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~-~---~~~---------------l-------------------- 195 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPE-G---IAA---------------I-------------------- 195 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcH-H---HHH---------------H--------------------
Confidence 999886432 2333344444 34567899999621 0 000 0
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHH
Q 000672 958 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 1037 (1360)
Q Consensus 958 ~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~~~l~~ 1037 (1360)
...++. -| ..+.+.... .
T Consensus 196 --------------~~~~~~----------~~----~~i~~~~~~------------------~---------------- 213 (460)
T PRK11776 196 --------------SQRFQR----------DP----VEVKVESTH------------------D---------------- 213 (460)
T ss_pred --------------HHHhcC----------CC----EEEEECcCC------------------C----------------
Confidence 000000 00 000000000 0
Q ss_pred HHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhccccccccC
Q 000672 1038 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 1117 (1360)
Q Consensus 1038 LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S 1117 (1360)
.+. .. ..+......
T Consensus 214 ------~~~------------------------i~------------------------------------~~~~~~~~~ 227 (460)
T PRK11776 214 ------LPA------------------------IE------------------------------------QRFYEVSPD 227 (460)
T ss_pred ------CCC------------------------ee------------------------------------EEEEEeCcH
Confidence 000 00 000001122
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCC
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n 1197 (1360)
.|+..|..+|... .+.++|||+.....++.+...|.. .|+....++|+++..+|+.+++.|++
T Consensus 228 ~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~------------~~~~v~~~hg~~~~~eR~~~l~~F~~--- 290 (460)
T PRK11776 228 ERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNA------------QGFSALALHGDLEQRDRDQVLVRFAN--- 290 (460)
T ss_pred HHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHh------------CCCcEEEEeCCCCHHHHHHHHHHHHc---
Confidence 3777777777643 357899999999999999999986 58889999999999999999999996
Q ss_pred CCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCC
Q 000672 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 1259 (1360)
Q Consensus 1198 ~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~g 1259 (1360)
+.++ +|++|.+++.|||++.+++||+||+|.++..+.||+||++|.|+.- ..|.|+..+
T Consensus 291 g~~~-vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 291 RSCS-VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred CCCc-EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 4455 5889999999999999999999999999999999999999999764 445566554
No 34
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.86 E-value=5.8e-20 Score=226.04 Aligned_cols=122 Identities=25% Similarity=0.330 Sum_probs=102.8
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
+.|...|..++.. ....++|||++....++.|...|.. .|+.+..++|.++..+|..+++.|++
T Consensus 320 ~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~------------~~~~~~~~~g~~~~~~R~~~~~~Fr~-- 383 (475)
T PRK01297 320 SDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVK------------DGINAAQLSGDVPQHKRIKTLEGFRE-- 383 (475)
T ss_pred hhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHH------------cCCCEEEEECCCCHHHHHHHHHHHhC--
Confidence 3456666666653 2346999999999999999999975 57889999999999999999999996
Q ss_pred CCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecC
Q 000672 1197 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~ 1258 (1360)
+.++ +|++|.++++|||+.+++.||+|++|+++..+.|++||++|.|+.-.+ +.|+..
T Consensus 384 -G~~~-vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~--i~~~~~ 441 (475)
T PRK01297 384 -GKIR-VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS--ISFAGE 441 (475)
T ss_pred -CCCc-EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE--EEEecH
Confidence 4455 588999999999999999999999999999999999999999986443 334443
No 35
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.86 E-value=5e-20 Score=225.37 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=97.7
Q ss_pred HHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCC
Q 000672 1120 MVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKR 1199 (1360)
Q Consensus 1120 l~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~ 1199 (1360)
..+|..++.. ....++|||+.....++.|...|.. .|+....++|.++..+|..+++.|++ +.
T Consensus 233 ~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~------------~g~~~~~lhg~~~~~~R~~~l~~F~~---g~ 295 (456)
T PRK10590 233 RELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNK------------DGIRSAAIHGNKSQGARTRALADFKS---GD 295 (456)
T ss_pred HHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHH------------CCCCEEEEECCCCHHHHHHHHHHHHc---CC
Confidence 3344444432 2346899999999999999999985 57889999999999999999999996 45
Q ss_pred ceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEE
Q 000672 1200 VKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 1252 (1360)
Q Consensus 1200 v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~V 1252 (1360)
++ +|++|++++.|||++.+++||+||+|.++..+.|++||++|.|.+-.+.+
T Consensus 296 ~~-iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 296 IR-VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred Cc-EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 55 58899999999999999999999999999999999999999998754443
No 36
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.86 E-value=6.2e-20 Score=222.65 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCC
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n 1197 (1360)
.|+..|..++... ...++|||+.....++.|...|.. .|+.+..++|+++..+|..+++.|++
T Consensus 241 ~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~------------~g~~v~~lhg~~~~~~R~~~l~~F~~--- 303 (423)
T PRK04837 241 EKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAA------------DGHRVGLLTGDVAQKKRLRILEEFTR--- 303 (423)
T ss_pred HHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHh------------CCCcEEEecCCCChhHHHHHHHHHHc---
Confidence 4677777777642 357999999999999999999985 58899999999999999999999996
Q ss_pred CCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecC
Q 000672 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1198 ~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~ 1258 (1360)
+.++ +|++|.++++|||++.+++||+||+|+++..+.|++||++|.|+.-. ++-|+.+
T Consensus 304 g~~~-vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 304 GDLD-ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred CCCc-EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 4555 68999999999999999999999999999999999999999997643 4445654
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.85 E-value=1.8e-19 Score=225.31 Aligned_cols=121 Identities=21% Similarity=0.349 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCC
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n 1197 (1360)
.|+..|..++.. ..+.++|||+.....++.|...|.. .|+.+..++|+++..+|..+++.|++
T Consensus 243 ~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~------------~g~~v~~lhg~l~~~eR~~il~~Fr~--- 305 (572)
T PRK04537 243 EKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLER------------HGYRVGVLSGDVPQKKRESLLNRFQK--- 305 (572)
T ss_pred HHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHH------------cCCCEEEEeCCCCHHHHHHHHHHHHc---
Confidence 456666666653 3467999999999999999999986 57899999999999999999999996
Q ss_pred CCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecC
Q 000672 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1198 ~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~ 1258 (1360)
+.++ +||+|.+++.|||+..+++||+||.|+++..+.|++||+.|.|..-.+. .|+..
T Consensus 306 G~~~-VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai--~~~~~ 363 (572)
T PRK04537 306 GQLE-ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI--SFACE 363 (572)
T ss_pred CCCe-EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE--EEecH
Confidence 4454 6999999999999999999999999999999999999999999865443 34543
No 38
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.85 E-value=8.7e-20 Score=239.75 Aligned_cols=115 Identities=14% Similarity=0.197 Sum_probs=90.8
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
+.|+||||....+++.+.+.|...+.....+ ..+..+..++|+++ .+..++++|.++. ...+|+|++..++|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~---~~~~~v~~itg~~~--~~~~li~~Fk~~~---~p~IlVsvdmL~TG 769 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQ---VEDDAVIKITGSID--KPDQLIRRFKNER---LPNIVVTVDLLTTG 769 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCC---cCccceEEEeCCcc--chHHHHHHHhCCC---CCeEEEEecccccC
Confidence 4799999999999999988887642110000 12234567999986 6788999998743 33579999999999
Q ss_pred CCccCCCEEEEEcCCCChhHHHHHhHhHhhcCC---CCcEEEEEEe
Q 000672 1214 INLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQ---TKPVFAYRLM 1256 (1360)
Q Consensus 1214 LNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQ---kK~V~VyrLv 1256 (1360)
+|.+..+.||++.|+-++..+.|++||+.|..- +....||.++
T Consensus 770 ~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 770 IDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred CCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 999999999999999999999999999999864 5556777765
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.84 E-value=5.6e-19 Score=222.79 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=93.9
Q ss_pred CCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccc
Q 000672 1133 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1212 (1360)
Q Consensus 1133 ~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGge 1212 (1360)
.+.++|||+.....++.+...|.. .|+.+..++|+++.++|..+++.|.. +.++ +|++|.+.|.
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~------------~g~~v~~~Ha~l~~~~R~~i~~~F~~---g~~~-VLVaT~a~~~ 298 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQS------------RGISAAAYHAGLDNDVRADVQEAFQR---DDLQ-IVVATVAFGM 298 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHh------------CCCCEEEecCCCCHHHHHHHHHHHHC---CCCC-EEEEechhhc
Confidence 468999999999999999999986 68899999999999999999999986 3454 5889999999
Q ss_pred cCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEE
Q 000672 1213 GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 1252 (1360)
Q Consensus 1213 GLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~V 1252 (1360)
|||++..+.||+||+|.++..+.|++||++|.|....+.+
T Consensus 299 GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred cCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 9999999999999999999999999999999997655443
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.84 E-value=5.4e-19 Score=222.98 Aligned_cols=116 Identities=23% Similarity=0.216 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCC
Q 000672 1119 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1198 (1360)
Q Consensus 1119 Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~ 1198 (1360)
+...+.++|.... +.+.|||+......+.+...|.. .|+.+..++|+++.++|..+++.|.. +
T Consensus 211 ~~~~l~~~l~~~~--~~~~IIf~~sr~~~e~la~~L~~------------~g~~~~~~H~~l~~~~R~~i~~~F~~---g 273 (591)
T TIGR01389 211 KQKFLLDYLKKHR--GQSGIIYASSRKKVEELAERLES------------QGISALAYHAGLSNKVRAENQEDFLY---D 273 (591)
T ss_pred HHHHHHHHHHhcC--CCCEEEEECcHHHHHHHHHHHHh------------CCCCEEEEECCCCHHHHHHHHHHHHc---C
Confidence 3444555555432 67899999999999999999985 58889999999999999999999986 3
Q ss_pred CceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEE
Q 000672 1199 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 1252 (1360)
Q Consensus 1199 ~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~V 1252 (1360)
.++ +|++|.+.|.|||++.++.||+|++|.|+..+.|++||++|.|+...+.+
T Consensus 274 ~~~-vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 274 DVK-VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred CCc-EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 444 69999999999999999999999999999999999999999997765543
No 41
>PTZ00424 helicase 45; Provisional
Probab=99.84 E-value=2.2e-19 Score=216.06 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=95.9
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
..++|||+.....++.+...|.. .++.+..++|+++..+|..+++.|++ +.++ +|++|.++++|
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~------------~~~~~~~~h~~~~~~~R~~i~~~f~~---g~~~-vLvaT~~l~~G 330 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHE------------RDFTVSCMHGDMDQKDRDLIMREFRS---GSTR-VLITTDLLARG 330 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHH------------CCCcEEEEeCCCCHHHHHHHHHHHHc---CCCC-EEEEcccccCC
Confidence 46899999999999999999985 57889999999999999999999996 4555 58999999999
Q ss_pred CCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCC
Q 000672 1214 INLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 1260 (1360)
Q Consensus 1214 LNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gT 1260 (1360)
||++.++.||+||++.++..+.|++||++|.|.. -.+|.|+....
T Consensus 331 iDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~ 375 (401)
T PTZ00424 331 IDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPDD 375 (401)
T ss_pred cCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHHH
Confidence 9999999999999999999999999999999864 44555666543
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.83 E-value=1.4e-18 Score=220.01 Aligned_cols=312 Identities=17% Similarity=0.222 Sum_probs=197.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHH
Q 000672 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNW 799 (1360)
Q Consensus 721 ~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW 799 (1360)
...|.++|..++..++.... .....+.+|..++|+|||+.++..+...+.. ...+||++|.. |..||
T Consensus 233 pf~lt~~Q~~ai~~I~~~~~--------~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 233 PFKLTRAQKRVVKEILQDLK--------SDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILAEQH 300 (630)
T ss_pred CCCCCHHHHHHHHHHHHHhc--------cCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHHHHH
Confidence 34799999999988865321 1234568999999999999876555544432 24799999966 67899
Q ss_pred HHHHHHhCCCCCCCeEEEEecCcchh-HHHHHHHHHh-hcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEE
Q 000672 800 KQEFMKWRPSELKPLRVFMLEDVSRD-RRAELLAKWR-AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDIL 877 (1360)
Q Consensus 800 ~~Ei~k~~p~~~~~l~V~~~~g~~~~-~r~~~l~~~~-~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlV 877 (1360)
.+++.++++. ..+++..+.|.... .+...+.... ...+|+|.|+..+... ..-...++|
T Consensus 301 ~~~~~~l~~~--~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~-----------------~~~~~l~lv 361 (630)
T TIGR00643 301 YNSLRNLLAP--LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK-----------------VEFKRLALV 361 (630)
T ss_pred HHHHHHHhcc--cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-----------------ccccccceE
Confidence 9999999864 23677777665433 3333333322 3458999988765421 011267899
Q ss_pred EEeCCcccCCcchHHHHHHhhcc---cceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCC
Q 000672 878 VCDEAHMIKNTRADTTQALKQVK---CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST 954 (1360)
Q Consensus 878 IlDEAH~IKN~~Sk~skal~~Lk---a~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st 954 (1360)
|+||+|++.- .++........ ..+.++|||||+...+. +..+ +.
T Consensus 362 VIDEaH~fg~--~qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~~------~~--------------------- 408 (630)
T TIGR00643 362 IIDEQHRFGV--EQRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTVY------GD--------------------- 408 (630)
T ss_pred EEechhhccH--HHHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHhc------CC---------------------
Confidence 9999999732 22333333333 67899999999763321 0000 00
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCce--EEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHH
Q 000672 955 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT--VFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFF 1032 (1360)
Q Consensus 955 ~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~--e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~ 1032 (1360)
+. ..+...+|+.. .....+.-.
T Consensus 409 -----------------l~--------~~~i~~~p~~r~~i~~~~~~~~------------------------------- 432 (630)
T TIGR00643 409 -----------------LD--------TSIIDELPPGRKPITTVLIKHD------------------------------- 432 (630)
T ss_pred -----------------cc--------eeeeccCCCCCCceEEEEeCcc-------------------------------
Confidence 00 00000112110 000000000
Q ss_pred HHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcccc
Q 000672 1033 AGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYK 1112 (1360)
Q Consensus 1033 ~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~ 1112 (1360)
T Consensus 433 -------------------------------------------------------------------------------- 432 (630)
T TIGR00643 433 -------------------------------------------------------------------------------- 432 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccChhHHHHHHHHHhhhcCCCeEEEEeCch--------hhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHH
Q 000672 1113 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSI--------PTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSE 1184 (1360)
Q Consensus 1113 ~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~--------~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~e 1184 (1360)
+...+.+.+......+.+++||+... ..+..+...|... ..++.+..++|+++..+
T Consensus 433 ------~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~----------~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 433 ------EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA----------FPKYNVGLLHGRMKSDE 496 (630)
T ss_pred ------hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhh----------CCCCcEEEEeCCCCHHH
Confidence 00122223333334466777777554 2344555555542 14678999999999999
Q ss_pred HHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCC-ChhHHHHHhHhHhhcCCCCcEEE
Q 000672 1185 RQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-NPTYDLQAIYRAWRYGQTKPVFA 1252 (1360)
Q Consensus 1185 R~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~W-NPs~~~QAiGRa~RiGQkK~V~V 1252 (1360)
|..++++|.+ +.++ +|++|.+.++|+|++.++.||+++++. +.+.+.|++||++|.|..-.+++
T Consensus 497 R~~i~~~F~~---g~~~-ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 561 (630)
T TIGR00643 497 KEAVMEEFRE---GEVD-ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLL 561 (630)
T ss_pred HHHHHHHHHc---CCCC-EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEE
Confidence 9999999996 3444 688999999999999999999999975 77899999999999987655543
No 43
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.83 E-value=1.2e-18 Score=219.33 Aligned_cols=117 Identities=20% Similarity=0.245 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCC
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n 1197 (1360)
.|...|..+|... ...++|||+.....++.|...|.. .|+....++|.+++.+|..++++|+.
T Consensus 231 ~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~------------~g~~~~~lhgd~~q~~R~~il~~Fr~--- 293 (629)
T PRK11634 231 RKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALER------------NGYNSAALNGDMNQALREQTLERLKD--- 293 (629)
T ss_pred hHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHh------------CCCCEEEeeCCCCHHHHHHHHHHHhC---
Confidence 4677777777642 346899999999999999999986 58889999999999999999999996
Q ss_pred CCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEE
Q 000672 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 1252 (1360)
Q Consensus 1198 ~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~V 1252 (1360)
+.++ +||+|++++.|||++.+++||+||+|.++..+.|++||++|.|..-.+.+
T Consensus 294 G~~~-ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 294 GRLD-ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred CCCC-EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 4454 68999999999999999999999999999999999999999997644433
No 44
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.82 E-value=3.8e-18 Score=217.61 Aligned_cols=310 Identities=16% Similarity=0.215 Sum_probs=199.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHH
Q 000672 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNW 799 (1360)
Q Consensus 721 ~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW 799 (1360)
...|.++|..++.-+..... .......+|..++|+|||+.++..+...... ...+||++|.. |..|+
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~--------~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLA--------SPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILAEQH 326 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhh--------ccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHHHHH
Confidence 34699999999987765321 1234578999999999999887666554432 24799999966 77899
Q ss_pred HHHHHHhCCCCCCCeEEEEecCcch-hHHHHHHHHHhh-cCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEE
Q 000672 800 KQEFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDIL 877 (1360)
Q Consensus 800 ~~Ei~k~~p~~~~~l~V~~~~g~~~-~~r~~~l~~~~~-~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlV 877 (1360)
.+.+.++++. ..+++..+.|... ..+...+..... ..+|+|.|+..+.... .-...++|
T Consensus 327 ~~~l~~l~~~--~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v-----------------~~~~l~lv 387 (681)
T PRK10917 327 YENLKKLLEP--LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV-----------------EFHNLGLV 387 (681)
T ss_pred HHHHHHHHhh--cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc-----------------hhcccceE
Confidence 9999999864 2367777776543 344444444433 4789998887654210 01267899
Q ss_pred EEeCCcccCCcchHHHHHHhhc-ccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCChH
Q 000672 878 VCDEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSE 956 (1360)
Q Consensus 878 IlDEAH~IKN~~Sk~skal~~L-ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~~ 956 (1360)
|+||+|++. ......+... ...+.++|||||+...+. +..+ +.
T Consensus 388 VIDE~Hrfg---~~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~~------g~----------------------- 431 (681)
T PRK10917 388 IIDEQHRFG---VEQRLALREKGENPHVLVMTATPIPRTLA----MTAY------GD----------------------- 431 (681)
T ss_pred EEechhhhh---HHHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHHc------CC-----------------------
Confidence 999999973 2223333333 357899999999653211 0000 00
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCce--EEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHH
Q 000672 957 DVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKT--VFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAG 1034 (1360)
Q Consensus 957 ~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~--e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~~~ 1034 (1360)
+ .. .+...+|+.. .....+
T Consensus 432 ---------------~-------~~-s~i~~~p~~r~~i~~~~~------------------------------------ 452 (681)
T PRK10917 432 ---------------L-------DV-SVIDELPPGRKPITTVVI------------------------------------ 452 (681)
T ss_pred ---------------C-------ce-EEEecCCCCCCCcEEEEe------------------------------------
Confidence 0 00 0000111100 000000
Q ss_pred HHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcccccc
Q 000672 1035 YQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKEL 1114 (1360)
Q Consensus 1035 l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 1114 (1360)
T Consensus 453 -------------------------------------------------------------------------------- 452 (681)
T PRK10917 453 -------------------------------------------------------------------------------- 452 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccChhHHHHHHHHHhhhcCCCeEEEEeCchh--------hHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHH
Q 000672 1115 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIP--------TLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQ 1186 (1360)
Q Consensus 1115 ~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~--------tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~ 1186 (1360)
...+...+.+.+......|.+++||+.... .+..+.+.|... ..++++..++|+++..+|.
T Consensus 453 -~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~----------~~~~~v~~lHG~m~~~eR~ 521 (681)
T PRK10917 453 -PDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA----------FPELRVGLLHGRMKPAEKD 521 (681)
T ss_pred -CcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHH----------CCCCcEEEEeCCCCHHHHH
Confidence 001112223334434456788888887432 234455556542 1347899999999999999
Q ss_pred HHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCC-ChhHHHHHhHhHhhcCCCCcEE
Q 000672 1187 KLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-NPTYDLQAIYRAWRYGQTKPVF 1251 (1360)
Q Consensus 1187 ~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~W-NPs~~~QAiGRa~RiGQkK~V~ 1251 (1360)
.++++|.+ +.++ +|++|.+.++|+|++.++.||+++++. ..+.+.|++||++|.|..-.|+
T Consensus 522 ~i~~~F~~---g~~~-ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 522 AVMAAFKA---GEID-ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred HHHHHHHc---CCCC-EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 99999996 4444 689999999999999999999999975 6788999999999998754443
No 45
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.81 E-value=8e-18 Score=215.71 Aligned_cols=349 Identities=14% Similarity=0.120 Sum_probs=215.3
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~ 800 (1360)
..|+|||.+++..+. .|.+.|+...||+|||+..+.-+...+... ...++|||+|.. |..|-.
T Consensus 35 ~~p~~~Q~~ai~~il--------------~G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 35 HRPWQHQARAAELAH--------------AGRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKALAADQL 98 (742)
T ss_pred CcCCHHHHHHHHHHH--------------CCCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHHHHHHH
Confidence 358999999998773 467899999999999987665444433322 224799999954 778888
Q ss_pred HHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEe
Q 000672 801 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 880 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlD 880 (1360)
.++.++.. ..+++..++|......... .....+|+|+|++++......... ....+ ..+..+||+|
T Consensus 99 ~~l~~l~~---~~i~v~~~~Gdt~~~~r~~---i~~~~~IivtTPd~L~~~~L~~~~-------~~~~~-l~~l~~vViD 164 (742)
T TIGR03817 99 RAVRELTL---RGVRPATYDGDTPTEERRW---AREHARYVLTNPDMLHRGILPSHA-------RWARF-LRRLRYVVID 164 (742)
T ss_pred HHHHHhcc---CCeEEEEEeCCCCHHHHHH---HhcCCCEEEEChHHHHHhhccchh-------HHHHH-HhcCCEEEEe
Confidence 88888862 2367777777654332222 234578999999887531111110 11111 2367899999
Q ss_pred CCcccCC-cchHHHHHHhhc--------ccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCC
Q 000672 881 EAHMIKN-TRADTTQALKQV--------KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT 951 (1360)
Q Consensus 881 EAH~IKN-~~Sk~skal~~L--------ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~ 951 (1360)
|||.+.+ ..+.....+.++ .....+++|||.- ++.++.. .+ +..|+.
T Consensus 165 Eah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~--n~~~~~~---~l--------------~g~~~~----- 220 (742)
T TIGR03817 165 ECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTA--DPAAAAS---RL--------------IGAPVV----- 220 (742)
T ss_pred ChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCC--CHHHHHH---HH--------------cCCCeE-----
Confidence 9999975 234444444444 2356899999952 2222211 10 001100
Q ss_pred CCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhh-cCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhh
Q 000672 952 NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK-DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKS 1030 (1360)
Q Consensus 952 ~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~-~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s 1030 (1360)
.+.. .-|......+...... +. . . ..
T Consensus 221 -------------------------------~i~~~~~~~~~~~~~~~~p~~-----~~-~---~----~~--------- 247 (742)
T TIGR03817 221 -------------------------------AVTEDGSPRGARTVALWEPPL-----TE-L---T----GE--------- 247 (742)
T ss_pred -------------------------------EECCCCCCcCceEEEEecCCc-----cc-c---c----cc---------
Confidence 0000 0111111111100000 00 0 0 00
Q ss_pred HHHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcc
Q 000672 1031 FFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHT 1110 (1360)
Q Consensus 1031 ~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~ 1110 (1360)
+ . ..
T Consensus 248 --------------~---------~--------------------------------------~~--------------- 251 (742)
T TIGR03817 248 --------------N---------G--------------------------------------AP--------------- 251 (742)
T ss_pred --------------c---------c--------------------------------------cc---------------
Confidence 0 0 00
Q ss_pred ccccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHH
Q 000672 1111 YKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVE 1190 (1360)
Q Consensus 1111 ~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~ 1190 (1360)
........|...|..++. .+.++|||++.....+.|...|........ ...+..+..++|++++++|.++.+
T Consensus 252 ~r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~----~~l~~~v~~~hgg~~~~eR~~ie~ 323 (742)
T TIGR03817 252 VRRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVD----PDLAERVAAYRAGYLPEDRRELER 323 (742)
T ss_pred cccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc----cccccchhheecCCCHHHHHHHHH
Confidence 000001134445555554 478999999999999999998875211000 012456778899999999999999
Q ss_pred HHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHH
Q 000672 1191 RFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 1267 (1360)
Q Consensus 1191 ~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~ 1267 (1360)
+|.+ ++++ +|++|++++.|||+...+.||+|+.|-+...+.|++||++|.|+.-. ++-++..+..|..+..
T Consensus 324 ~f~~---G~i~-vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 324 ALRD---GELL-GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred HHHc---CCce-EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 9996 5665 68999999999999999999999999999999999999999997643 3444555556655443
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.81 E-value=4.7e-18 Score=220.06 Aligned_cols=311 Identities=15% Similarity=0.233 Sum_probs=202.9
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHHH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 801 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~~ 801 (1360)
.+.|+|..++..+..... ...+...++..++|.|||..++..+...... .+.++|+||.. |+.|...
T Consensus 451 ~~T~~Q~~aI~~I~~d~~--------~~~~~d~Ll~adTGsGKT~val~a~l~al~~----g~qvlvLvPT~~LA~Q~~~ 518 (926)
T TIGR00580 451 EETPDQLKAIEEIKADME--------SPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----GKQVAVLVPTTLLAQQHFE 518 (926)
T ss_pred CCCHHHHHHHHHHHhhhc--------ccCcCCEEEECCCCccHHHHHHHHHHHHHHh----CCeEEEEeCcHHHHHHHHH
Confidence 578999999988764321 1234578999999999998877555443332 25799999966 7788999
Q ss_pred HHHHhCCCCCCCeEEEEecCcch-hHHHHHHHHHhh-cCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEE
Q 000672 802 EFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWRA-KGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 879 (1360)
Q Consensus 802 Ei~k~~p~~~~~l~V~~~~g~~~-~~r~~~l~~~~~-~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIl 879 (1360)
.|.+++.. .++++..+++... ..+...+..+.. ..+|+|.|+..+... ..-....+||+
T Consensus 519 ~f~~~~~~--~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~-----------------v~f~~L~llVI 579 (926)
T TIGR00580 519 TFKERFAN--FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKD-----------------VKFKDLGLLII 579 (926)
T ss_pred HHHHHhcc--CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCC-----------------CCcccCCEEEe
Confidence 99988764 3466666665432 233333444332 467888887543210 01125689999
Q ss_pred eCCcccCCcchHHHHHHhhc-ccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHH
Q 000672 880 DEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 958 (1360)
Q Consensus 880 DEAH~IKN~~Sk~skal~~L-ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~~~~ 958 (1360)
||+|++.. .....++.+ .....++|||||+...+.. .+..+..+.
T Consensus 580 DEahrfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s----------------------------- 625 (926)
T TIGR00580 580 DEEQRFGV---KQKEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLS----------------------------- 625 (926)
T ss_pred ecccccch---hHHHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcE-----------------------------
Confidence 99999732 233445555 4568999999997633210 000000000
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEE---EecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHH
Q 000672 959 KIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVI---TVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGY 1035 (1360)
Q Consensus 959 ~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV---~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~~~l 1035 (1360)
.+ ..||.....+ .+..+
T Consensus 626 ------------------------~I--~~~p~~R~~V~t~v~~~~---------------------------------- 645 (926)
T TIGR00580 626 ------------------------II--ATPPEDRLPVRTFVMEYD---------------------------------- 645 (926)
T ss_pred ------------------------EE--ecCCCCccceEEEEEecC----------------------------------
Confidence 00 0111100000 00000
Q ss_pred HHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhccccccc
Q 000672 1036 QALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELD 1115 (1360)
Q Consensus 1036 ~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 1115 (1360)
T Consensus 646 -------------------------------------------------------------------------------- 645 (926)
T TIGR00580 646 -------------------------------------------------------------------------------- 645 (926)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
. ..+...+......+.+++||++....++.+...|..+ ..++++..++|.|+..+|.+++.+|.+
T Consensus 646 --~--~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~----------~p~~~v~~lHG~m~~~eRe~im~~F~~- 710 (926)
T TIGR00580 646 --P--ELVREAIRRELLRGGQVFYVHNRIESIEKLATQLREL----------VPEARIAIAHGQMTENELEEVMLEFYK- 710 (926)
T ss_pred --H--HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHh----------CCCCeEEEecCCCCHHHHHHHHHHHHc-
Confidence 0 0011111111234789999999999999999999863 246789999999999999999999996
Q ss_pred CCCCceEEEeecccccccCCccCCCEEEEEcCC-CChhHHHHHhHhHhhcCCCCcEEEEEEecC
Q 000672 1196 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGS-WNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~-WNPs~~~QAiGRa~RiGQkK~V~VyrLva~ 1258 (1360)
++++ +|+||.+.+.|||++.+++||+++++ +..+.+.|++||++|.|.. -++|-|+..
T Consensus 711 --Gk~~-ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 711 --GEFQ-VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred --CCCC-EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 4454 68999999999999999999999985 4677889999999998864 455555544
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.80 E-value=9.1e-18 Score=214.46 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=94.9
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
+...||||......+.|...|.. .|+....++|+++..+|..++++|.. +.++ +|++|.|.|.|
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~------------~Gika~~YHAGLs~eeR~~vqe~F~~---Gei~-VLVATdAFGMG 743 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQE------------FGHKAAFYHGSMDPAQRAFVQKQWSK---DEIN-IICATVAFGMG 743 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHH------------CCCCeeeeeCCCCHHHHHHHHHHHhc---CCCc-EEEEechhhcC
Confidence 45789999999999999999986 68999999999999999999999996 4455 58889999999
Q ss_pred CCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEE
Q 000672 1214 INLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYR 1254 (1360)
Q Consensus 1214 LNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~Vyr 1254 (1360)
||++..+.||+|++|.++..+.|++||++|.|+.-.+..|+
T Consensus 744 IDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 744 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 99999999999999999999999999999999986665543
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.80 E-value=1.3e-17 Score=217.72 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=96.3
Q ss_pred HHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEe
Q 000672 1126 ILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLI 1205 (1360)
Q Consensus 1126 iL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLI 1205 (1360)
.|..+...+.++|||++....++.+...|...... +..+..+..++|+++.++|..+.+.|++ +.++ +|+
T Consensus 276 ~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~------~~~~~~i~~hHg~ls~~~R~~ve~~fk~---G~i~-vLV 345 (876)
T PRK13767 276 TLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPE------EYDEDNIGAHHSSLSREVRLEVEEKLKR---GELK-VVV 345 (876)
T ss_pred HHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchh------hccccceeeeeCCCCHHHHHHHHHHHHc---CCCe-EEE
Confidence 33333445789999999999999999999863211 0134678889999999999999999996 4555 688
Q ss_pred ecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhc-CCCCcEEEEE
Q 000672 1206 STRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY-GQTKPVFAYR 1254 (1360)
Q Consensus 1206 STkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~Ri-GQkK~V~Vyr 1254 (1360)
+|.+++.|||+...+.||++++|.++..+.|++||++|. |+...-.++-
T Consensus 346 aTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 346 SSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred ECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 999999999999999999999999999999999999976 4444555544
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.79 E-value=2.4e-17 Score=217.72 Aligned_cols=107 Identities=19% Similarity=0.235 Sum_probs=91.4
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
+.+++||++....++.+...|... ..+..+..++|.|+..+|.+++.+|.+ ++++ +|++|.+.+.|
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~----------~p~~~v~~lHG~m~q~eRe~im~~Fr~---Gk~~-VLVaTdIierG 874 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAEL----------VPEARIAIGHGQMRERELERVMNDFHH---QRFN-VLVCTTIIETG 874 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHh----------CCCCcEEEEeCCCCHHHHHHHHHHHHh---cCCC-EEEECchhhcc
Confidence 678999999999999999999863 246788999999999999999999996 4555 58899999999
Q ss_pred CCccCCCEEEEEcC-CCChhHHHHHhHhHhhcCCCCcEEEEEEe
Q 000672 1214 INLHSANRVIIVDG-SWNPTYDLQAIYRAWRYGQTKPVFAYRLM 1256 (1360)
Q Consensus 1214 LNL~~An~VIi~D~-~WNPs~~~QAiGRa~RiGQkK~V~VyrLv 1256 (1360)
||++.+++||+.++ .|..+.+.|++||++|.|.+- ++|-+.
T Consensus 875 IDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~ 916 (1147)
T PRK10689 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLT 916 (1147)
T ss_pred cccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce--EEEEEe
Confidence 99999999999877 478888999999999998764 444344
No 50
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=2.7e-17 Score=197.06 Aligned_cols=118 Identities=24% Similarity=0.275 Sum_probs=105.6
Q ss_pred ChhHHHHHHHHHhhh-cCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1117 SGKMVLLLDILTMCS-NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~-~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
..|...|..+|.... ..+.|+||||....+.+.|+..|+. .+++..-|+|..++.+|..+++.|.++
T Consensus 323 ~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~------------~~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR------------KGWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh------------cCcceeeecccccHHHHHHHHHhcccC
Confidence 468888888888776 4567999999999999999999985 578899999999999999999999974
Q ss_pred CCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcE
Q 000672 1196 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 1250 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V 1250 (1360)
+.. +|++|++++.||++...++||+||+|-|...|.+|+||.+|-|++=..
T Consensus 391 ---~~~-vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 391 ---KSP-VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred ---Ccc-eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 333 799999999999999999999999999999999999999998877443
No 51
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=5.6e-17 Score=183.26 Aligned_cols=125 Identities=21% Similarity=0.276 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCC
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n 1197 (1360)
-|-.+|+.+|++.. |..+||||..-.+.+.+.-+|+. .|+....++|.|++..|..+++.|++.
T Consensus 286 ~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~------------lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-- 349 (476)
T KOG0330|consen 286 DKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRN------------LGFQAIPLHGQMSQSKRLGALNKFKAG-- 349 (476)
T ss_pred ccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHh------------cCcceecccchhhHHHHHHHHHHHhcc--
Confidence 35667888888654 58999999999999999999996 589999999999999999999999974
Q ss_pred CCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHH
Q 000672 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 1262 (1360)
Q Consensus 1198 ~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIE 1262 (1360)
.. -+|++|++|+.||+.+.++.||+||.|-+...|+.|.||+.|.| +.-.+..||+.-.+|
T Consensus 350 -~r-~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 350 -AR-SILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred -CC-cEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 22 27999999999999999999999999999999999999999999 677788899985544
No 52
>PRK02362 ski2-like helicase; Provisional
Probab=99.75 E-value=2.2e-16 Score=203.93 Aligned_cols=335 Identities=18% Similarity=0.139 Sum_probs=201.0
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW~ 800 (1360)
..|+|+|.+++.-++ ..+.++|++.++|.|||+.+...+...+. ..+++|+|+| ..|+.|+.
T Consensus 22 ~~l~p~Q~~ai~~~~-------------~~g~nvlv~APTGSGKTlia~lail~~l~----~~~kal~i~P~raLa~q~~ 84 (737)
T PRK02362 22 EELYPPQAEAVEAGL-------------LDGKNLLAAIPTASGKTLIAELAMLKAIA----RGGKALYIVPLRALASEKF 84 (737)
T ss_pred CcCCHHHHHHHHHHH-------------hCCCcEEEECCCcchHHHHHHHHHHHHHh----cCCcEEEEeChHHHHHHHH
Confidence 468999999997643 24679999999999999987654444332 1358999999 56999999
Q ss_pred HHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEe
Q 000672 801 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 880 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlD 880 (1360)
.+|.++.+. .+++..+.|...... .+....+|+|+|++.+..+.... .. .....++||+|
T Consensus 85 ~~~~~~~~~---g~~v~~~tGd~~~~~-----~~l~~~~IiV~Tpek~~~llr~~-----------~~-~l~~v~lvViD 144 (737)
T PRK02362 85 EEFERFEEL---GVRVGISTGDYDSRD-----EWLGDNDIIVATSEKVDSLLRNG-----------AP-WLDDITCVVVD 144 (737)
T ss_pred HHHHHhhcC---CCEEEEEeCCcCccc-----cccCCCCEEEECHHHHHHHHhcC-----------hh-hhhhcCEEEEE
Confidence 999987542 256666655432211 23356789999998775432110 00 11267999999
Q ss_pred CCcccCCcc-hHHH-HHHhhc----ccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCC
Q 000672 881 EAHMIKNTR-ADTT-QALKQV----KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNST 954 (1360)
Q Consensus 881 EAH~IKN~~-Sk~s-kal~~L----ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st 954 (1360)
|+|.+.+.. .... ..+.++ ...+.++||||+- |..++. .|+....+.+ .| +
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la---~wl~~~~~~~------~~-r----------- 201 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELA---DWLDAELVDS------EW-R----------- 201 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHH---HHhCCCcccC------CC-C-----------
Confidence 999996432 2222 222333 3457899999973 334433 2222111100 00 0
Q ss_pred hHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHH
Q 000672 955 SEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAG 1034 (1360)
Q Consensus 955 ~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~~~ 1034 (1360)
|-.....++.. + .++ .
T Consensus 202 ----------------------------------pv~l~~~v~~~--~---~~~-----~-------------------- 217 (737)
T PRK02362 202 ----------------------------------PIDLREGVFYG--G---AIH-----F-------------------- 217 (737)
T ss_pred ----------------------------------CCCCeeeEecC--C---eec-----c--------------------
Confidence 00000000000 0 000 0
Q ss_pred HHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcccccc
Q 000672 1035 YQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKEL 1114 (1360)
Q Consensus 1035 l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 1114 (1360)
+. ...... ..
T Consensus 218 ----------~~-----~~~~~~-------------------------------------------------------~~ 227 (737)
T PRK02362 218 ----------DD-----SQREVE-------------------------------------------------------VP 227 (737)
T ss_pred ----------cc-----ccccCC-------------------------------------------------------Cc
Confidence 00 000000 00
Q ss_pred ccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCC----------------------Ccccc--cCC
Q 000672 1115 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGK----------------------QGKLW--KKG 1170 (1360)
Q Consensus 1115 ~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~----------------------~~~~~--~~G 1170 (1360)
....++..+.+.+ ..+.++|||+........+...|........ ..... .-.
T Consensus 228 ~~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 228 SKDDTLNLVLDTL----EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred cchHHHHHHHHHH----HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 0012233333333 3578999999999888877777764211000 00000 001
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEE----Ec-----CCCChhHHHHHhHhH
Q 000672 1171 KDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVII----VD-----GSWNPTYDLQAIYRA 1241 (1360)
Q Consensus 1171 i~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi----~D-----~~WNPs~~~QAiGRa 1241 (1360)
..+..++|+++..+|..+.+.|++ +.++ +|++|.+.+.|+|+++.+.||. || .+.++..+.|++||+
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~---G~i~-VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRA 379 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRD---RLIK-VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRA 379 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHc---CCCe-EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcC
Confidence 356788999999999999999996 5666 5899999999999998877765 76 477889999999999
Q ss_pred hhcCCCCcEEEEEEecC
Q 000672 1242 WRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1242 ~RiGQkK~V~VyrLva~ 1258 (1360)
+|.|....-.++-+...
T Consensus 380 GR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 380 GRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CCCCCCCCceEEEEecC
Confidence 99998755455555533
No 53
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.74 E-value=1.2e-15 Score=193.97 Aligned_cols=167 Identities=20% Similarity=0.213 Sum_probs=107.7
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEech-hhHHHH
Q 000672 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNW 799 (1360)
Q Consensus 721 ~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~-sLl~QW 799 (1360)
....++||..||+-+.+.+... ..+...++|++.+.+|+|||++++.++..++... +..++|||||. .|..||
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~----~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~--~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRK----TWGKDERGGLIWHTQGSGKTLTMLFAARKALELL--KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhc----ccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc--CCCeEEEEECcHHHHHHH
Confidence 4457999999999887765431 1112346899999999999999999888776432 34589999995 599999
Q ss_pred HHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCC-CEEE
Q 000672 800 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGP-DILV 878 (1360)
Q Consensus 800 ~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~f-dlVI 878 (1360)
.++|..+.+... .. ..+...-...+ .....+|+|+|+++|.... ...........+ .+||
T Consensus 310 ~~~f~~~~~~~~-----~~--~~s~~~L~~~l--~~~~~~iivtTiQk~~~~~----------~~~~~~~~~~~~~~lvI 370 (667)
T TIGR00348 310 MKEFQSLQKDCA-----ER--IESIAELKRLL--EKDDGGIIITTIQKFDKKL----------KEEEEKFPVDRKEVVVI 370 (667)
T ss_pred HHHHHhhCCCCC-----cc--cCCHHHHHHHH--hCCCCCEEEEEhHHhhhhH----------hhhhhccCCCCCCEEEE
Confidence 999999875311 00 01111111111 1134689999999886411 000111111122 3799
Q ss_pred EeCCcccCCcchHHHHHHh-hcccceEEEEeCCCCCC
Q 000672 879 CDEAHMIKNTRADTTQALK-QVKCQRRIALTGSPLQN 914 (1360)
Q Consensus 879 lDEAH~IKN~~Sk~skal~-~Lka~~RllLTGTPiqN 914 (1360)
+||||+... ....+.++ .+...++++|||||+..
T Consensus 371 vDEaHrs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 371 FDEAHRSQY--GELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred EEcCccccc--hHHHHHHHhhCCCCcEEEEeCCCccc
Confidence 999998642 23344553 56778999999999864
No 54
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.5e-15 Score=188.04 Aligned_cols=134 Identities=24% Similarity=0.344 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCC
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n 1197 (1360)
.|+.+|..++..... .++|||+.....++.|...|.. .|+....|+|++++.+|.+.+..|++
T Consensus 259 ~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~------------~g~~~~~lhG~l~q~~R~~~l~~F~~--- 321 (513)
T COG0513 259 EKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRK------------RGFKVAALHGDLPQEERDRALEKFKD--- 321 (513)
T ss_pred HHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHH------------CCCeEEEecCCCCHHHHHHHHHHHHc---
Confidence 488888888876443 4799999999999999999986 68999999999999999999999995
Q ss_pred CCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHH
Q 000672 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 1272 (1360)
Q Consensus 1198 ~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K 1272 (1360)
+.++ +|++|++++.||++...++||+||+|.++..+.+|+||.+|.|.+ =..+.|++. .-|...+.+....
T Consensus 322 g~~~-vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~--G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 322 GELR-VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRK--GVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred CCCC-EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCC--CeEEEEeCc-HHHHHHHHHHHHH
Confidence 4555 699999999999999999999999999999999999999999943 355667766 2244444444333
No 55
>PRK01172 ski2-like helicase; Provisional
Probab=99.72 E-value=7.2e-16 Score=197.56 Aligned_cols=121 Identities=20% Similarity=0.101 Sum_probs=87.1
Q ss_pred HHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCc-------cc------ccCCCcEEEecCCCCHHHHHHHHHHH
Q 000672 1126 ILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQG-------KL------WKKGKDWYRLDGRTESSERQKLVERF 1192 (1360)
Q Consensus 1126 iL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~-------~~------~~~Gi~~~rLdGsts~~eR~~iI~~F 1192 (1360)
++......+.++|||+........+...|.......... .. ..-...+..++|+++.++|..+.+.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 334434457899999999988888887776532110000 00 00012356789999999999999999
Q ss_pred hCCCCCCceEEEeecccccccCCccCCCEEEEEcC---------CCChhHHHHHhHhHhhcCCCCcEE
Q 000672 1193 NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDG---------SWNPTYDLQAIYRAWRYGQTKPVF 1251 (1360)
Q Consensus 1193 n~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~---------~WNPs~~~QAiGRa~RiGQkK~V~ 1251 (1360)
++ +.++ +|++|.+++.|+|+++ .+||+++. ++++..+.|++||++|.|....-.
T Consensus 308 ~~---g~i~-VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~ 370 (674)
T PRK01172 308 RN---RYIK-VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGI 370 (674)
T ss_pred Hc---CCCe-EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcce
Confidence 96 4565 5889999999999986 68888764 357788899999999999765533
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.71 E-value=3.5e-15 Score=177.13 Aligned_cols=123 Identities=17% Similarity=0.244 Sum_probs=95.1
Q ss_pred hHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHH----HHHHhC
Q 000672 1119 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKL----VERFNE 1194 (1360)
Q Consensus 1119 Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~i----I~~Fn~ 1194 (1360)
|...+..++... ..+.++|||++....+..+...|.... ....+..++|.++..+|.+. ++.|.+
T Consensus 208 ~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~----------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~ 276 (358)
T TIGR01587 208 EISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENA----------PEEEIMLLHSRFTEKDRAKKEAELLEEMKK 276 (358)
T ss_pred CHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhc----------CCCeEEEEECCCCHHHHHHHHHHHHHHhcC
Confidence 344444555433 347899999999999999999998621 22358899999999999764 888986
Q ss_pred CCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCC----cEEEEEEecCC
Q 000672 1195 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTK----PVFAYRLMAHG 1259 (1360)
Q Consensus 1195 ~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK----~V~VyrLva~g 1259 (1360)
+..+ +|++|.+++.|||+ .++.||+++.+ +..+.|++||++|.|.+. .|+||.....+
T Consensus 277 ---~~~~-ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 277 ---NEKF-VIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred ---CCCe-EEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 3343 68999999999999 48898888765 889999999999999763 57777665554
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.71 E-value=1.8e-15 Score=195.03 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=103.0
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHH-HHHHHHHhcccCCCceEEEec-hhhHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIA-FLYTAMRSVNLGLRTALIVTP-VNVLHNW 799 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIA-lI~~ll~~~~~~~k~~LIV~P-~sLl~QW 799 (1360)
..|+|+|.+++.-.+ ..+.+.|++.++|.|||+.+.. ++..+... .+++|+|+| ..|+.|+
T Consensus 22 ~~l~~~Q~~ai~~~~-------------~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----~~~~l~l~P~~aLa~q~ 84 (720)
T PRK00254 22 EELYPPQAEALKSGV-------------LEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----GGKAVYLVPLKALAEEK 84 (720)
T ss_pred CCCCHHHHHHHHHHH-------------hCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----CCeEEEEeChHHHHHHH
Confidence 468999999996422 2467899999999999998844 44333322 358999999 5588999
Q ss_pred HHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEE
Q 000672 800 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 879 (1360)
Q Consensus 800 ~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIl 879 (1360)
..+|.+|... .+++..+.|..... ..|....+|+|+|++.+..+..... .+ ....++||+
T Consensus 85 ~~~~~~~~~~---g~~v~~~~Gd~~~~-----~~~~~~~~IiV~Tpe~~~~ll~~~~-----------~~-l~~l~lvVi 144 (720)
T PRK00254 85 YREFKDWEKL---GLRVAMTTGDYDST-----DEWLGKYDIIIATAEKFDSLLRHGS-----------SW-IKDVKLVVA 144 (720)
T ss_pred HHHHHHHhhc---CCEEEEEeCCCCCc-----hhhhccCCEEEEcHHHHHHHHhCCc-----------hh-hhcCCEEEE
Confidence 9999887432 35666666543322 1234567899999987754321100 01 136789999
Q ss_pred eCCcccCCc--chHHHHHHhhc-ccceEEEEeCCC
Q 000672 880 DEAHMIKNT--RADTTQALKQV-KCQRRIALTGSP 911 (1360)
Q Consensus 880 DEAH~IKN~--~Sk~skal~~L-ka~~RllLTGTP 911 (1360)
||+|.+... .......+..+ ...+.++||||+
T Consensus 145 DE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl 179 (720)
T PRK00254 145 DEIHLIGSYDRGATLEMILTHMLGRAQILGLSATV 179 (720)
T ss_pred cCcCccCCccchHHHHHHHHhcCcCCcEEEEEccC
Confidence 999999642 34444455555 456789999997
No 58
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.67 E-value=1.2e-14 Score=182.35 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=100.0
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
...|+.++.+.+.+....+.+||||+.+....+.+...|.. .|+++..++|.+...+|..+..+|+.
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~------------~gi~~~~L~a~~~~~E~~ii~~ag~~- 472 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLR------------EGIPHNLLNAQNAAKEAQIIAEAGQK- 472 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHH------------CCCCEEEecCCChHHHHHHHHHcCCC-
Confidence 35799999999998888899999999999999999999986 68999999999998887666666654
Q ss_pred CCCCceEEEeecccccccCCcc---------CCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcE
Q 000672 1196 LNKRVKCTLISTRAGSLGINLH---------SANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 1250 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~---------~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V 1250 (1360)
+. ++|+|+.+|.|+++. +.+.||.++++-+... .|++||++|.|..-.+
T Consensus 473 --g~---VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 473 --GA---VTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred --Ce---EEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 32 589999999999999 8899999999976654 9999999999977443
No 59
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.66 E-value=2.5e-14 Score=181.25 Aligned_cols=118 Identities=20% Similarity=0.283 Sum_probs=90.6
Q ss_pred cCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHH-----HHHHHHhC----CC----CC
Q 000672 1132 NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQ-----KLVERFNE----PL----NK 1198 (1360)
Q Consensus 1132 ~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~-----~iI~~Fn~----~~----n~ 1198 (1360)
..+.++|||++....+..|...|.. .++ ..++|.+++.+|. .++++|.. .. ++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~------------~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~ 335 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPK------------EKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQ 335 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHh------------cCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccc
Confidence 3467999999999999999999985 344 8999999999999 78999975 21 11
Q ss_pred CceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCC--cEEEEEEecCCCHHHHHHH
Q 000672 1199 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTK--PVFAYRLMAHGTMEEKIYK 1267 (1360)
Q Consensus 1199 ~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK--~V~VyrLva~gTIEEkI~~ 1267 (1360)
.. .+||+|++++.|||+.. ++||+...+ +..++||+||++|.|... .++|+.+-...+-+..+|.
T Consensus 336 g~-~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~ 402 (844)
T TIGR02621 336 GT-VYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYG 402 (844)
T ss_pred cc-eEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCC
Confidence 13 47999999999999986 999987766 478999999999999863 3555544111223456664
No 60
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.65 E-value=1.9e-15 Score=185.36 Aligned_cols=367 Identities=19% Similarity=0.179 Sum_probs=228.2
Q ss_pred CcccccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEE
Q 000672 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 790 (1360)
Q Consensus 711 ~~~v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV 790 (1360)
.+..+.|......+|+||..+|+...+.+. ......+|+..+|.|||.+||+++..+++++. .+++|.+
T Consensus 153 ~~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~---------~g~~raLlvMATGTGKTrTAiaii~rL~r~~~--~KRVLFL 221 (875)
T COG4096 153 QQLAYIDIDSAIGPRYYQIIAIRRVIEAFS---------KGQNRALLVMATGTGKTRTAIAIIDRLIKSGW--VKRVLFL 221 (875)
T ss_pred cccccCcccccccchHHHHHHHHHHHHHHh---------cCCceEEEEEecCCCcceeHHHHHHHHHhcch--hheeeEE
Confidence 566778888889999999999999987764 23456999999999999999999999998876 4799999
Q ss_pred ec-hhhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhh
Q 000672 791 TP-VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHA 869 (1360)
Q Consensus 791 ~P-~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~l 869 (1360)
+- ++|+.|-..+|..|.|.+-. .+. ..+... ...+.|++.+|+++......... ....+
T Consensus 222 aDR~~Lv~QA~~af~~~~P~~~~-~n~--i~~~~~----------~~s~~i~lsTyqt~~~~~~~~~~-------~~~~f 281 (875)
T COG4096 222 ADRNALVDQAYGAFEDFLPFGTK-MNK--IEDKKG----------DTSSEIYLSTYQTMTGRIEQKED-------EYRRF 281 (875)
T ss_pred echHHHHHHHHHHHHHhCCCccc-eee--eecccC----------CcceeEEEeehHHHHhhhhcccc-------ccccC
Confidence 96 77999999999999998422 111 111110 11458999999998754322210 01112
Q ss_pred hcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCC
Q 000672 870 LQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQ 949 (1360)
Q Consensus 870 l~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~ 949 (1360)
-...||+||+||||+- ....++.+...-...+++|||||-..--.+-|.+++ ..|+..+.
T Consensus 282 ~~g~FDlIvIDEaHRg---i~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~Ys 341 (875)
T COG4096 282 GPGFFDLIVIDEAHRG---IYSEWSSILDYFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYAYS 341 (875)
T ss_pred CCCceeEEEechhhhh---HHhhhHHHHHHHHHHHHhhccCcccccccccccccC-----------------CCcceeec
Confidence 2336999999999973 223344444445556677799996522111122221 23332221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHH-hHHhhhhhhhhhhhcCCCceEEEEEe----------cCCHHHHHHHHHHHHhhccc
Q 000672 950 HTNSTSEDVKIMNQRSHILYEQL-KGFVQRMDMNVVKKDLPPKTVFVITV----------KLSPLQRRLYKRFLDLHGFT 1018 (1360)
Q Consensus 950 ~~~st~~~~~~~~~r~~~L~~~L-~~fv~Rrtk~~v~~~LP~k~e~vV~v----------~LS~~Q~~lYe~ll~~~~~~ 1018 (1360)
. ...+ .+|+ .|+ ....+.+ .++ ++.+++-..+......
T Consensus 342 l------------------eeAV~DGfL-----------vpy-~vi~i~~~~~~~G~~~~~~s-erek~~g~~i~~dd~~ 390 (875)
T COG4096 342 L------------------EEAVEDGFL-----------VPY-KVIRIDTDFDLDGWKPDAGS-EREKLQGEAIDEDDQN 390 (875)
T ss_pred H------------------HHHhhcccc-----------CCC-CceEEeeeccccCcCcCccc-hhhhhhccccCccccc
Confidence 1 1111 1111 121 1111111 222 2333333222100000
Q ss_pred ccccchHHHHhhHHHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccch
Q 000672 1019 NDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQ 1098 (1360)
Q Consensus 1019 ~~~~~~~~~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~ 1098 (1360)
... .+ . +..
T Consensus 391 ~~~--------------------------------------~d---------~---------------------dr~--- 399 (875)
T COG4096 391 FEA--------------------------------------RD---------F---------------------DRT--- 399 (875)
T ss_pred ccc--------------------------------------cc---------c---------------------chh---
Confidence 000 00 0 000
Q ss_pred hhhhhhhhhhccccccccChhHHHHHHHHHhhhcC---C---CeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCc
Q 000672 1099 KDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNM---G---DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKD 1172 (1360)
Q Consensus 1099 ~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~~---g---~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~ 1172 (1360)
+..-.....+...|...... | .|.|||+...++++.|...|...++. .+|.-
T Consensus 400 ---------------~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype-------~~~~~ 457 (875)
T COG4096 400 ---------------LVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE-------YNGRY 457 (875)
T ss_pred ---------------ccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc-------ccCce
Confidence 00011122233333332222 2 59999999999999999999975432 23444
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhc-------C
Q 000672 1173 WYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY-------G 1245 (1360)
Q Consensus 1173 ~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~Ri-------G 1245 (1360)
...|+|... +-+..|+.|-. +.....+.+|.+.+.+|+|.+.+..+||+-.--+-+.+.|.+||.-|+ |
T Consensus 458 a~~IT~d~~--~~q~~Id~f~~--ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~ 533 (875)
T COG4096 458 AMKITGDAE--QAQALIDNFID--KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPE 533 (875)
T ss_pred EEEEeccch--hhHHHHHHHHh--cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCcc
Confidence 667889876 45668888876 344455799999999999999999999999999999999999999996 3
Q ss_pred CCCc-EEEEEEe
Q 000672 1246 QTKP-VFAYRLM 1256 (1360)
Q Consensus 1246 QkK~-V~VyrLv 1256 (1360)
|.|. ..|+.|+
T Consensus 534 ~dK~~F~ifDf~ 545 (875)
T COG4096 534 QDKEFFTIFDFV 545 (875)
T ss_pred ccceeEEEEEhh
Confidence 4443 5666665
No 61
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.64 E-value=1.3e-14 Score=182.75 Aligned_cols=339 Identities=16% Similarity=0.153 Sum_probs=216.5
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcc-c---CCCceEEEechhhH-
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN-L---GLRTALIVTPVNVL- 796 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~-~---~~k~~LIV~P~sLl- 796 (1360)
..+.|+|+.++..+ ..|.+.++..+||.|||..|+.-+...+.... . +.-.+|-|.|.--+
T Consensus 21 ~~~t~~Q~~a~~~i--------------~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 21 TSLTPPQRYAIPEI--------------HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred CCCCHHHHHHHHHH--------------hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 56899999999876 35899999999999999998876655444331 1 11358999995544
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCE
Q 000672 797 HNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDI 876 (1360)
Q Consensus 797 ~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdl 876 (1360)
..-...+..|... ..+.|.+-+|......... ...++.+|+|||++++..+...+.. .+.+ .+..+
T Consensus 87 ~Di~~rL~~~~~~--~G~~v~vRhGDT~~~er~r--~~~~PPdILiTTPEsL~lll~~~~~-----r~~l-----~~vr~ 152 (814)
T COG1201 87 NDIRRRLEEPLRE--LGIEVAVRHGDTPQSEKQK--MLKNPPHILITTPESLAILLNSPKF-----RELL-----RDVRY 152 (814)
T ss_pred HHHHHHHHHHHHH--cCCccceecCCCChHHhhh--ccCCCCcEEEeChhHHHHHhcCHHH-----HHHh-----cCCcE
Confidence 4455556555432 2355556666544333222 2346889999999999865543311 1111 26778
Q ss_pred EEEeCCcccCCc--chHHHHHHhhc---c-cceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCC
Q 000672 877 LVCDEAHMIKNT--RADTTQALKQV---K-CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQH 950 (1360)
Q Consensus 877 VIlDEAH~IKN~--~Sk~skal~~L---k-a~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~ 950 (1360)
||+||.|.+.+. .++++-.+.+| . ...|++||||-- ++. -...||.+.-.
T Consensus 153 VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~--~~~---~varfL~g~~~------------------- 208 (814)
T COG1201 153 VIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVG--PPE---EVAKFLVGFGD------------------- 208 (814)
T ss_pred EEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccC--CHH---HHHHHhcCCCC-------------------
Confidence 999999999864 36777666666 2 478999999942 222 22223221100
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhh
Q 000672 951 TNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKS 1030 (1360)
Q Consensus 951 ~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s 1030 (1360)
....+......+..+.+.++-... .
T Consensus 209 -----------------------------~~~Iv~~~~~k~~~i~v~~p~~~~--~------------------------ 233 (814)
T COG1201 209 -----------------------------PCEIVDVSAAKKLEIKVISPVEDL--I------------------------ 233 (814)
T ss_pred -----------------------------ceEEEEcccCCcceEEEEecCCcc--c------------------------
Confidence 000000001111111111000000 0
Q ss_pred HHHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcc
Q 000672 1031 FFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHT 1110 (1360)
Q Consensus 1031 ~~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~ 1110 (1360)
|.
T Consensus 234 ----------------------------------------------------------------------~~-------- 235 (814)
T COG1201 234 ----------------------------------------------------------------------YD-------- 235 (814)
T ss_pred ----------------------------------------------------------------------cc--------
Confidence 00
Q ss_pred ccccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHH
Q 000672 1111 YKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVE 1190 (1360)
Q Consensus 1111 ~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~ 1190 (1360)
..=...+.+.|..+.+....+|||++...+...+...|.++ .+..+...+||.+.+.|...-+
T Consensus 236 ------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~-----------~~~~i~~HHgSlSre~R~~vE~ 298 (814)
T COG1201 236 ------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKL-----------GPDIIEVHHGSLSRELRLEVEE 298 (814)
T ss_pred ------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHh-----------cCCceeeecccccHHHHHHHHH
Confidence 00011223333334444568999999999999999999974 3478899999999999999999
Q ss_pred HHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhH-hhcCCCCcEEEEEEecCCCHHHHHHHHH
Q 000672 1191 RFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRA-WRYGQTKPVFAYRLMAHGTMEEKIYKRQ 1269 (1360)
Q Consensus 1191 ~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa-~RiGQkK~V~VyrLva~gTIEEkI~~rq 1269 (1360)
+|++ +..+ .+++|.....||+.-..+.||.|.+|-.-+...||+||+ ||+|....-+ +++.+ .++.+--+.
T Consensus 299 ~lk~---G~lr-avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~---ii~~~-r~dllE~~v 370 (814)
T COG1201 299 RLKE---GELK-AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGI---IIAED-RDDLLECLV 370 (814)
T ss_pred HHhc---CCce-EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEE---EEecC-HHHHHHHHH
Confidence 9997 4566 488889999999999999999999999999999999998 7777653333 33333 444444333
Q ss_pred H
Q 000672 1270 V 1270 (1360)
Q Consensus 1270 ~ 1270 (1360)
.
T Consensus 371 i 371 (814)
T COG1201 371 L 371 (814)
T ss_pred H
Confidence 3
No 62
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.9e-15 Score=164.49 Aligned_cols=124 Identities=20% Similarity=0.298 Sum_probs=104.4
Q ss_pred hHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCC
Q 000672 1119 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1198 (1360)
Q Consensus 1119 Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~ 1198 (1360)
|+..|.++-..+.- ...+|||+.....++|.+-+.. .++.+..++|.+++++|.++++.|+.+
T Consensus 253 KfdtLcdLYd~LtI--tQavIFcnTk~kVdwLtekm~~------------~nftVssmHGDm~qkERd~im~dFRsg--- 315 (400)
T KOG0328|consen 253 KFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMRE------------ANFTVSSMHGDMEQKERDKIMNDFRSG--- 315 (400)
T ss_pred hHhHHHHHhhhheh--heEEEEecccchhhHHHHHHHh------------hCceeeeccCCcchhHHHHHHHHhhcC---
Confidence 55555555543322 5789999999999999999986 678899999999999999999999974
Q ss_pred CceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHH
Q 000672 1199 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 1262 (1360)
Q Consensus 1199 ~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIE 1262 (1360)
..+ +||+|++-+.|++++..+.||+||.|-|+..+++||||.+|+|.+ -.+.+|+....++
T Consensus 316 ~Sr-vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRk--GvainFVk~~d~~ 376 (400)
T KOG0328|consen 316 KSR-VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK--GVAINFVKSDDLR 376 (400)
T ss_pred Cce-EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCc--ceEEEEecHHHHH
Confidence 334 599999999999999999999999999999999999999999965 3556777766554
No 63
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.61 E-value=1.1e-13 Score=168.69 Aligned_cols=321 Identities=16% Similarity=0.212 Sum_probs=201.1
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhh-HHH
Q 000672 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHN 798 (1360)
Q Consensus 720 l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sL-l~Q 798 (1360)
+-..|-..|+.++.-+..-+. ....-+-+|--++|+|||+.|+..+......+ ..+.+.+|+.+ ..|
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~--------~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G----~Q~ALMAPTEILA~Q 326 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLA--------SPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG----YQAALMAPTEILAEQ 326 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhc--------CchhhHHHhccCcCCCHHHHHHHHHHHHHHcC----CeeEEeccHHHHHHH
Confidence 345677889999876654322 13345568888999999998877666665543 36889999885 558
Q ss_pred HHHHHHHhCCCCCCCeEEEEecCcch-hHHHHHHHHHh-hcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCE
Q 000672 799 WKQEFMKWRPSELKPLRVFMLEDVSR-DRRAELLAKWR-AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDI 876 (1360)
Q Consensus 799 W~~Ei~k~~p~~~~~l~V~~~~g~~~-~~r~~~l~~~~-~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdl 876 (1360)
-...+.+|++. ..++|..+.|.-+ ..|...+.... ...+++|=|+..|..-. --.+..+
T Consensus 327 H~~~~~~~l~~--~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V-----------------~F~~LgL 387 (677)
T COG1200 327 HYESLRKWLEP--LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKV-----------------EFHNLGL 387 (677)
T ss_pred HHHHHHHHhhh--cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcce-----------------eecceeE
Confidence 89999999975 2377777776543 34444444433 33578888877665211 0125678
Q ss_pred EEEeCCcccCCcchHHHHHHhhcc-cceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCCh
Q 000672 877 LVCDEAHMIKNTRADTTQALKQVK-CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTS 955 (1360)
Q Consensus 877 VIlDEAH~IKN~~Sk~skal~~Lk-a~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~ 955 (1360)
||+||-|++.- -++.+...+=. .++.+.||||||+.++.= + .||+.
T Consensus 388 VIiDEQHRFGV--~QR~~L~~KG~~~Ph~LvMTATPIPRTLAl--t--------~fgDl--------------------- 434 (677)
T COG1200 388 VIIDEQHRFGV--HQRLALREKGEQNPHVLVMTATPIPRTLAL--T--------AFGDL--------------------- 434 (677)
T ss_pred EEEeccccccH--HHHHHHHHhCCCCCcEEEEeCCCchHHHHH--H--------Hhccc---------------------
Confidence 99999999842 23333333335 689999999999876530 0 01100
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecC-CHHHHHHHHHHHHhhcccccccchHHHHhhHHHH
Q 000672 956 EDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKL-SPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAG 1034 (1360)
Q Consensus 956 ~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~L-S~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~~~ 1034 (1360)
+. .+..+||+..--+...-+ ...-.++|+.+......-
T Consensus 435 ------------------------dv-S~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~G---------------- 473 (677)
T COG1200 435 ------------------------DV-SIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKG---------------- 473 (677)
T ss_pred ------------------------cc-hhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcC----------------
Confidence 00 122367876322222222 223344555443321100
Q ss_pred HHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcccccc
Q 000672 1035 YQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKEL 1114 (1360)
Q Consensus 1035 l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 1114 (1360)
+.. .|. +..+
T Consensus 474 ---------rQa-----------------------------------------------------Y~V--------cPLI 483 (677)
T COG1200 474 ---------RQA-----------------------------------------------------YVV--------CPLI 483 (677)
T ss_pred ---------CEE-----------------------------------------------------EEE--------eccc
Confidence 000 000 0111
Q ss_pred ccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhC
Q 000672 1115 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1194 (1360)
Q Consensus 1115 ~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~ 1194 (1360)
+.|.|+. ...+..+...|+. +..++.+..++|.|+.+++++++.+|++
T Consensus 484 eESE~l~----------------------l~~a~~~~~~L~~----------~~~~~~vgL~HGrm~~~eKd~vM~~Fk~ 531 (677)
T COG1200 484 EESEKLE----------------------LQAAEELYEELKS----------FLPELKVGLVHGRMKPAEKDAVMEAFKE 531 (677)
T ss_pred cccccch----------------------hhhHHHHHHHHHH----------HcccceeEEEecCCChHHHHHHHHHHHc
Confidence 2233333 0122233344443 2357789999999999999999999997
Q ss_pred CCCCCceEEEeecccccccCCccCCCEEEEEcC-CCChhHHHHHhHhHhhcCCCCcEE
Q 000672 1195 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDG-SWNPTYDLQAIYRAWRYGQTKPVF 1251 (1360)
Q Consensus 1195 ~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~-~WNPs~~~QAiGRa~RiGQkK~V~ 1251 (1360)
+++. +|+||.+..+|+|++.|+.+||.++ -+--+...|-.|||+|=+...-|.
T Consensus 532 ---~e~~-ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~ 585 (677)
T COG1200 532 ---GEID-ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCV 585 (677)
T ss_pred ---CCCc-EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEE
Confidence 4454 6899999999999999999999998 468899999999999966655554
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=9.8e-14 Score=175.79 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=101.9
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
...|+.+|.+.+......+.++||||.+....+.|...|.. .|+++..++|.+...+|..+...|+.
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~------------~gi~~~~L~~~~~~~e~~~i~~ag~~- 476 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE------------AGIPHNLLNAKNAAKEAQIIAEAGQK- 476 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------CCCCEEEecCCccHHHHHHHHHcCCC-
Confidence 35699999999988777799999999999999999999986 68999999999988777777666654
Q ss_pred CCCCceEEEeecccccccCCc---cCCC-----EEEEEcCCCChhHHHHHhHhHhhcCCCCcE
Q 000672 1196 LNKRVKCTLISTRAGSLGINL---HSAN-----RVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 1250 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL---~~An-----~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V 1250 (1360)
+. ++|+|..+|.|+++ +... +||++|+|-|+..+.|++||++|.|..-..
T Consensus 477 --g~---VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 477 --GA---VTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred --Ce---EEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 22 68999999999999 4777 999999999999999999999999987433
No 65
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=4e-14 Score=164.43 Aligned_cols=389 Identities=17% Similarity=0.184 Sum_probs=221.9
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHH
Q 000672 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHN 798 (1360)
Q Consensus 720 l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~Q 798 (1360)
....++|-|...+-|++..+ +. ..+..++-..++..+|.|||+.-.--|..++.+....+-++|||+|.. |+.|
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~----~~-p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEI----RS-PPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ 230 (620)
T ss_pred hcccccchHHHHHHHHHHhh----cC-CCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH
Confidence 34678999999999997643 11 233446678889999999998755556565555545556899999966 6789
Q ss_pred HHHHHHHhCCCCCCCeEEEEecCcchhHH-HHHHHHH--hhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCC
Q 000672 799 WKQEFMKWRPSELKPLRVFMLEDVSRDRR-AELLAKW--RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPD 875 (1360)
Q Consensus 799 W~~Ei~k~~p~~~~~l~V~~~~g~~~~~r-~~~l~~~--~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fd 875 (1360)
-.++|.+|++. ..+.|....+...-.. ...+..- .+..+|+|+|++.+........ .. -...-.
T Consensus 231 V~~~f~~~~~~--tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k--~f---------~Lk~Lr 297 (620)
T KOG0350|consen 231 VYDTFKRLNSG--TGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTK--SF---------DLKHLR 297 (620)
T ss_pred HHHHHHHhccC--CceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCC--Cc---------chhhce
Confidence 99999999987 3467777776543221 1111111 1233899999998764322110 00 001345
Q ss_pred EEEEeCCcccCCcchH--HHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCC
Q 000672 876 ILVCDEAHMIKNTRAD--TTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNS 953 (1360)
Q Consensus 876 lVIlDEAH~IKN~~Sk--~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~s 953 (1360)
++|+|||.++-+..-+ ....+..++...++.+++- +..+..-..|-.++. ....+.+
T Consensus 298 fLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~n--------ii~~~~~~~pt~~~e---~~t~~~~---------- 356 (620)
T KOG0350|consen 298 FLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDN--------IIRQRQAPQPTVLSE---LLTKLGK---------- 356 (620)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhh--------hhhhcccCCchhhHH---HHhhcCC----------
Confidence 7999999999765433 2333444444444444321 111111111111110 0000000
Q ss_pred ChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHH
Q 000672 954 TSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFA 1033 (1360)
Q Consensus 954 t~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~~ 1033 (1360)
..|++.-.+. + ..+|+.-..
T Consensus 357 ---------------------------------~~~~l~kL~~----s---atLsqdP~K-------------------- 376 (620)
T KOG0350|consen 357 ---------------------------------LYPPLWKLVF----S---ATLSQDPSK-------------------- 376 (620)
T ss_pred ---------------------------------cCchhHhhhc----c---hhhhcChHH--------------------
Confidence 0011000000 0 011110000
Q ss_pred HHHHHHHH-hcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhcccc
Q 000672 1034 GYQALAQI-WNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYK 1112 (1360)
Q Consensus 1034 ~l~~LRqi-c~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~ 1112 (1360)
|..+ ..+|.++........ .+ ..+..+... .-
T Consensus 377 ----l~~l~l~~Prl~~v~~~~~~---------------ry-----slp~~l~~~-----------------------~v 409 (620)
T KOG0350|consen 377 ----LKDLTLHIPRLFHVSKPLIG---------------RY-----SLPSSLSHR-----------------------LV 409 (620)
T ss_pred ----HhhhhcCCCceEEeecccce---------------ee-----ecChhhhhc-----------------------ee
Confidence 0000 122322211100000 00 000000000 00
Q ss_pred ccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHH
Q 000672 1113 ELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERF 1192 (1360)
Q Consensus 1113 ~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~F 1192 (1360)
..+.--|-..+..+|... ...++|+|+.+......+...|.-.+. .....+-.++|+.+.+.|.+.+.+|
T Consensus 410 v~~~~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~--------~~~~~~s~~t~~l~~k~r~k~l~~f 479 (620)
T KOG0350|consen 410 VTEPKFKPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFC--------SDNFKVSEFTGQLNGKRRYKMLEKF 479 (620)
T ss_pred ecccccchHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhc--------cccchhhhhhhhhhHHHHHHHHHHH
Confidence 000112444556666643 368999999999999999998883211 1345556699999999999999999
Q ss_pred hCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHH
Q 000672 1193 NEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 1272 (1360)
Q Consensus 1193 n~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K 1272 (1360)
+.+ .++ +||++++++.||++-..+.||+||||-.-..+..|+||..|-||.- ++|.++... |.+.+.....|
T Consensus 480 ~~g---~i~-vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~--~~r~F~klL~~ 551 (620)
T KOG0350|consen 480 AKG---DIN-VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH--EKRLFSKLLKK 551 (620)
T ss_pred hcC---Cce-EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc--cchHHHHHHHH
Confidence 974 444 6889999999999999999999999999999999999999999964 445555443 44555444444
No 66
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.58 E-value=7.3e-15 Score=147.61 Aligned_cols=120 Identities=32% Similarity=0.407 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCC
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n 1197 (1360)
.|+..+.+++......+.++|||+.+...+..+...|.. .+..+..++|+++..+|..+++.|+.+.
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~f~~~~- 78 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK------------PGIKVAALHGDGSQEEREEVLKDFREGE- 78 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh------------cCCcEEEEECCCCHHHHHHHHHHHHcCC-
Confidence 699999999998776789999999999999999999985 4678999999999999999999999742
Q ss_pred CCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEE
Q 000672 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 1253 (1360)
Q Consensus 1198 ~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~Vy 1253 (1360)
. .+|++|.++++|+|++.+++||+++++|++..+.|++||++|.||+..|++|
T Consensus 79 --~-~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 79 --I-VVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred --C-cEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 2 4788999999999999999999999999999999999999999998888764
No 67
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.58 E-value=8.4e-15 Score=155.76 Aligned_cols=168 Identities=21% Similarity=0.302 Sum_probs=107.4
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEech-hhHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~-sLl~QW~ 800 (1360)
.+|+|||.+++.-+++.+... .....++|..+||.|||+++++++..+.. ++|||||. +|+.||.
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~-------~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENK-------KEERRVLLNAPTGSGKTIIALALILELAR-------KVLIVAPNISLLEQWY 67 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTT-------SGCSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEESSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhc-------CCCCCEEEEECCCCCcChhhhhhhhcccc-------ceeEecCHHHHHHHHH
Confidence 469999999999887654310 13578999999999999999988877743 89999996 7899999
Q ss_pred HHHHHhCCCCCCCeEEEEe-------------cCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHH
Q 000672 801 QEFMKWRPSELKPLRVFML-------------EDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREIC 867 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V~~~-------------~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~ 867 (1360)
++|..+.+.. ..+... ........ .........++++++..+........... .......
T Consensus 68 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~l~~~~~~~~~~~-~~~~~~~ 140 (184)
T PF04851_consen 68 DEFDDFGSEK---YNFFEKSIKPAYDSKEFISIQDDISDK---SESDNNDKDIILTTYQSLQSDIKEEKKID-ESARRSY 140 (184)
T ss_dssp HHHHHHSTTS---EEEEE--GGGCCE-SEEETTTTEEEHH---HHHCBSS-SEEEEEHHHHHHHHHH----------GCH
T ss_pred HHHHHhhhhh---hhhcccccccccccccccccccccccc---cccccccccchhhHHHHHHhhcccccccc-cchhhhh
Confidence 9998887652 111110 00000111 11123466899999998875321110000 0000112
Q ss_pred hhhcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCC
Q 000672 868 HALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPL 912 (1360)
Q Consensus 868 ~ll~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPi 912 (1360)
......+++||+||||++.+... ++.+......++++|||||-
T Consensus 141 ~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 141 KLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp HGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 23345889999999999854332 66666688999999999994
No 68
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=2.9e-13 Score=156.67 Aligned_cols=122 Identities=20% Similarity=0.345 Sum_probs=106.3
Q ss_pred ccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhC
Q 000672 1115 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1194 (1360)
Q Consensus 1115 ~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~ 1194 (1360)
...-|+..|+++|.. ....|+|||-..-...++...+|..+ ...+.++-++|.++...|..++..|..
T Consensus 238 ~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~----------l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 238 EADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRL----------LKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred cHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHH----------hCCCcEEEecchhcchhHHHHHHHHHh
Confidence 345699999999986 34589999999999999999888863 367889999999999999999999998
Q ss_pred CCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEE
Q 000672 1195 PLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 1252 (1360)
Q Consensus 1195 ~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~V 1252 (1360)
..++ +|++|++++.||++++.+.||.||||-+|+.+.+|.||..|.|..-.-.|
T Consensus 306 ~~~~----vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 306 LSNG----VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred ccCc----eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEE
Confidence 5443 69999999999999999999999999999999999999999997744433
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.57 E-value=6.7e-13 Score=167.37 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=90.2
Q ss_pred CCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccc
Q 000672 1133 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1212 (1360)
Q Consensus 1133 ~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGge 1212 (1360)
.+..+|||......++.+...|... ..++.+..++|+++. +++.+++|.. +++.+ +|++|.+++.
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~----------~~~~~v~~LHG~Lsq--~eq~l~~ff~--~gk~k-ILVATdIAER 458 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKR----------LPIYDFYIIHGKVPN--IDEILEKVYS--SKNPS-IIISTPYLES 458 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhh----------cCCceEEeccCCcCH--HHHHHHHHhc--cCcee-EEeccChhhc
Confidence 3568999999999999999999852 126889999999995 4577788742 24444 6899999999
Q ss_pred cCCccCCCEEEEEc----CC--------CChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHH
Q 000672 1213 GINLHSANRVIIVD----GS--------WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 1262 (1360)
Q Consensus 1213 GLNL~~An~VIi~D----~~--------WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIE 1262 (1360)
||++.+.++||.++ |. .+.+...||.||++|. ++-.+|+|+++..+.
T Consensus 459 GIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 459 SVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLK 517 (675)
T ss_pred cccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhH
Confidence 99999999999997 21 2677889999999997 578889999887753
No 70
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.57 E-value=3.9e-13 Score=179.14 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=86.0
Q ss_pred CCCeEEEEeCchhhHHHHHHHHhcCCCCCC----------------Ccccc--cC---CCcEEEecCCCCHHHHHHHHHH
Q 000672 1133 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGK----------------QGKLW--KK---GKDWYRLDGRTESSERQKLVER 1191 (1360)
Q Consensus 1133 ~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~----------------~~~~~--~~---Gi~~~rLdGsts~~eR~~iI~~ 1191 (1360)
.+.++|||++.....+.+...|........ .+... .. ......++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 367899999999999999999976421000 00000 00 1124578899999999999999
Q ss_pred HhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhc
Q 000672 1192 FNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY 1244 (1360)
Q Consensus 1192 Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~Ri 1244 (1360)
|++ +.++ +|++|.+++.|||+...+.||+|+.|.+.+.+.|++||++|.
T Consensus 323 fK~---G~Lr-vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKS---GELR-CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHh---CCce-EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 996 5565 689999999999999999999999999999999999999985
No 71
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.56 E-value=3.1e-13 Score=157.55 Aligned_cols=114 Identities=17% Similarity=0.235 Sum_probs=102.6
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..++.+|..+|++.... .|||||+..-.+..++...|.+ -.+++.-|+|..++..|..+..+|....
T Consensus 314 ~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~------------~dlpv~eiHgk~~Q~kRT~~~~~F~kae 380 (543)
T KOG0342|consen 314 DSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNY------------IDLPVLEIHGKQKQNKRTSTFFEFCKAE 380 (543)
T ss_pred cchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhh------------cCCchhhhhcCCcccccchHHHHHhhcc
Confidence 45678888999876654 8999999999999999999996 4688999999999999999999999754
Q ss_pred CCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCC
Q 000672 1197 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT 1247 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQk 1247 (1360)
.+ +|++|++++.|+|++..+-||-||||-+|..|++|+||..|-|-+
T Consensus 381 sg----IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~ 427 (543)
T KOG0342|consen 381 SG----ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKE 427 (543)
T ss_pred cc----eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCC
Confidence 33 899999999999999999999999999999999999999997765
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.55 E-value=5.6e-13 Score=172.27 Aligned_cols=348 Identities=18% Similarity=0.191 Sum_probs=225.0
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHHH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 801 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~~ 801 (1360)
.|++||.++++.++ .|.+.|+.-.||+|||..-+..|...+.... ..+.|+|-|.. |.....+
T Consensus 70 ~lY~HQ~~A~~~~~--------------~G~~vvVtTgTgSGKTe~FllPIld~~l~~~--~a~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 70 RLYSHQVDALRLIR--------------EGRNVVVTTGTGSGKTESFLLPILDHLLRDP--SARALLLYPTNALANDQAE 133 (851)
T ss_pred cccHHHHHHHHHHH--------------CCCCEEEECCCCCchhHHHHHHHHHHHhhCc--CccEEEEechhhhHhhHHH
Confidence 39999999999884 4789999999999999887665554443332 24889999955 7777899
Q ss_pred HHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeC
Q 000672 802 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 881 (1360)
Q Consensus 802 Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDE 881 (1360)
.|.+|.......+.+..|+|.....+.. .....+.+|++|+|.|+..+....... ..++.....+||+||
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~--~~~~~pp~IllTNpdMLh~~llr~~~~--------~~~~~~~Lk~lVvDE 203 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERR--AIIRNPPDILLTNPDMLHYLLLRNHDA--------WLWLLRNLKYLVVDE 203 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHH--HHHhCCCCEEEeCHHHHHHHhccCcch--------HHHHHhcCcEEEEec
Confidence 9999875533357888888876655443 223578899999999986532211111 112223588999999
Q ss_pred CcccCCc-chHHHHHHhhcc--------cceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCC
Q 000672 882 AHMIKNT-RADTTQALKQVK--------CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTN 952 (1360)
Q Consensus 882 AH~IKN~-~Sk~skal~~Lk--------a~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~ 952 (1360)
+|..+.- .|..+-.+++|+ ....++.|||- ++..+|...+..-....
T Consensus 204 lHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~~---- 259 (851)
T COG1205 204 LHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFEV---- 259 (851)
T ss_pred ceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCccee----
Confidence 9999853 566666666662 44568888883 23333333322100000
Q ss_pred CChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhh-cCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhH
Q 000672 953 STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKK-DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF 1031 (1360)
Q Consensus 953 st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~-~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~ 1031 (1360)
.+.. --|.-..+.+.-. .+.....+.
T Consensus 260 ------------------------------~v~~~g~~~~~~~~~~~~-p~~~~~~~~---------------------- 286 (851)
T COG1205 260 ------------------------------PVDEDGSPRGLRYFVRRE-PPIRELAES---------------------- 286 (851)
T ss_pred ------------------------------eccCCCCCCCceEEEEeC-Ccchhhhhh----------------------
Confidence 0000 0111111111110 000000000
Q ss_pred HHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhccc
Q 000672 1032 FAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTY 1111 (1360)
Q Consensus 1032 ~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~ 1111 (1360)
T Consensus 287 -------------------------------------------------------------------------------- 286 (851)
T COG1205 287 -------------------------------------------------------------------------------- 286 (851)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCC-CCCCCcccccCCCcEEEecCCCCHHHHHHHHH
Q 000672 1112 KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLP-RPGKQGKLWKKGKDWYRLDGRTESSERQKLVE 1190 (1360)
Q Consensus 1112 ~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~-~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~ 1190 (1360)
..-++...+..++......+-|.|+|+.+...+..+........ ..+ + .-...+....|++...+|..+..
T Consensus 287 ---~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~--~---~l~~~v~~~~~~~~~~er~~ie~ 358 (851)
T COG1205 287 ---IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG--G---KLLDAVSTYRAGLHREERRRIEA 358 (851)
T ss_pred ---cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc--h---hhhhheeeccccCCHHHHHHHHH
Confidence 00134455556666677789999999999999998862222110 000 0 01245778889999999999999
Q ss_pred HHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCC-ChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHH
Q 000672 1191 RFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 1267 (1360)
Q Consensus 1191 ~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~W-NPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~ 1267 (1360)
.|+. +++. ++++|.|.-.|+++...+.||..-.|- .-....|+.||++|-||.-.+.+ ..-.+-++..+..
T Consensus 359 ~~~~---g~~~-~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~--v~~~~~~d~yy~~ 430 (851)
T COG1205 359 EFKE---GELL-GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLV--VLRSDPLDSYYLR 430 (851)
T ss_pred HHhc---CCcc-EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEE--EeCCCccchhhhh
Confidence 9997 4443 699999999999999999999999888 77899999999999996543322 2225666665543
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.55 E-value=1.3e-13 Score=172.28 Aligned_cols=116 Identities=19% Similarity=0.147 Sum_probs=102.9
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..|+.++++.+..+...|..|||||.+....+.|...|.. .|+++..++|. ..+|+..+..|...+
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~------------~gi~~~~Lna~--q~~rEa~ii~~ag~~ 453 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKE------------RGIPHNVLNAK--NHEREAEIIAQAGRK 453 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------cCCCeEEeeCC--hHHHHHHHHHhcCCC
Confidence 4688899998888888899999999999999999999996 68999999998 679999999998532
Q ss_pred CCCceEEEeecccccccCCccC-------CCEEEEEcCCCChhHHHHHhHhHhhcCCCCcE
Q 000672 1197 NKRVKCTLISTRAGSLGINLHS-------ANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 1250 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~-------An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V 1250 (1360)
.. ++|+|..+|.|+++.. .-+||.+++|-|+..+.|++||++|.|..-..
T Consensus 454 ---g~-VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 454 ---GA-VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred ---ce-EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 22 6999999999999887 66999999999999999999999999988443
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.55 E-value=5.8e-13 Score=158.33 Aligned_cols=87 Identities=16% Similarity=0.261 Sum_probs=70.4
Q ss_pred CCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccc
Q 000672 1133 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1212 (1360)
Q Consensus 1133 ~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGge 1212 (1360)
.+.|+|||+.....++.+...|... ..++.+..++|.++..+|.+.. +. .+|++|.+++.
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~----------~~~~~~~~l~g~~~~~~R~~~~---------~~-~iLVaTdv~~r 330 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQ----------GLGDDIGRITGFAPKKDRERAM---------QF-DILLGTSTVDV 330 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhh----------CCCceEEeeecCCCHHHHHHhc---------cC-CEEEEecHHhc
Confidence 4689999999999999999999852 1346788999999998887543 12 27999999999
Q ss_pred cCCccCCCEEEEEcCCCChhHHHHHhHhHh
Q 000672 1213 GINLHSANRVIIVDGSWNPTYDLQAIYRAW 1242 (1360)
Q Consensus 1213 GLNL~~An~VIi~D~~WNPs~~~QAiGRa~ 1242 (1360)
|||+... .|| ++ +-++..+.||+||++
T Consensus 331 GiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 331 GVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999864 666 66 568889999999974
No 75
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=1.7e-12 Score=161.58 Aligned_cols=130 Identities=14% Similarity=0.181 Sum_probs=104.1
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
...|..+|.+++......+..+|||+.+....+.|...|.. .|+++..|+|... +|+..+..|...
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~------------~gi~~~~Lhg~~~--~rE~~ii~~ag~ 520 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLRE------------AGLPHQVLNAKQD--AEEAAIVARAGQ 520 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------CCCCEEEeeCCcH--HHHHHHHHHcCC
Confidence 35699999999988777788999999999999999999986 6899999999865 566666666542
Q ss_pred CCCCceEEEeecccccccCCcc---CCC-----EEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHH
Q 000672 1196 LNKRVKCTLISTRAGSLGINLH---SAN-----RVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 1267 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~---~An-----~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~ 1267 (1360)
. + . ++|+|..+|.|+++. ... +||++|.|-|+..+.|++||++|.|..-.+. .|+ |.|+.++.
T Consensus 521 ~-g--~-VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~ 591 (656)
T PRK12898 521 R-G--R-ITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQ 591 (656)
T ss_pred C-C--c-EEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHH
Confidence 2 2 2 689999999999998 444 9999999999999999999999999763332 233 34556554
Q ss_pred H
Q 000672 1268 R 1268 (1360)
Q Consensus 1268 r 1268 (1360)
+
T Consensus 592 ~ 592 (656)
T PRK12898 592 S 592 (656)
T ss_pred h
Confidence 4
No 76
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.54 E-value=8.9e-13 Score=154.04 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=110.6
Q ss_pred cccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHh
Q 000672 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 1193 (1360)
Q Consensus 1114 ~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn 1193 (1360)
+..+.|...|+++|... ....+|||.+....++.|+..|.+ .|+...+++|+-++++|+.++..|+
T Consensus 499 ~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK------------~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333|consen 499 VSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEK------------AGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred ecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhh------------ccceEEEeeCCccHHHHHHHHHHHH
Confidence 45578999999999876 357899999999999999999997 5899999999999999999999999
Q ss_pred CCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCC
Q 000672 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 1259 (1360)
Q Consensus 1194 ~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~g 1259 (1360)
++... +|++|+++|.||+++..++||+||..-+--.+.+||||.+|-|+.-.+ .-|+++.
T Consensus 565 ~~t~d----IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta--iSflt~~ 624 (673)
T KOG0333|consen 565 EGTGD----ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA--ISFLTPA 624 (673)
T ss_pred hcCCC----EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee--EEEeccc
Confidence 74322 699999999999999999999999999999999999999999987544 3345544
No 77
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.54 E-value=1.3e-12 Score=159.87 Aligned_cols=315 Identities=16% Similarity=0.196 Sum_probs=211.5
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW~ 800 (1360)
...||-|.++|..++ .+..+|.-..+|-||++ +..|-+++. .+.+|||.| .+|+..-.
T Consensus 16 ~~FR~gQ~evI~~~l--------------~g~d~lvvmPTGgGKSl--CyQiPAll~-----~G~TLVVSPLiSLM~DQV 74 (590)
T COG0514 16 ASFRPGQQEIIDALL--------------SGKDTLVVMPTGGGKSL--CYQIPALLL-----EGLTLVVSPLISLMKDQV 74 (590)
T ss_pred cccCCCHHHHHHHHH--------------cCCcEEEEccCCCCcch--HhhhHHHhc-----CCCEEEECchHHHHHHHH
Confidence 356888999998775 35889999999999995 334444433 358999999 67888888
Q ss_pred HHHHHhCCCCCCCeEEEEecCc-chhHHHHHHHHHh-hcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEE
Q 000672 801 QEFMKWRPSELKPLRVFMLEDV-SRDRRAELLAKWR-AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V~~~~g~-~~~~r~~~l~~~~-~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVI 878 (1360)
+.+.... +.+..+++. +...+...+.... ...+++.++++.+.+- .+.+. +......+++
T Consensus 75 ~~l~~~G------i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~---------~f~~~---L~~~~i~l~v 136 (590)
T COG0514 75 DQLEAAG------IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSP---------RFLEL---LKRLPISLVA 136 (590)
T ss_pred HHHHHcC------ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcCh---------HHHHH---HHhCCCceEE
Confidence 8887642 455555554 4555555554442 2357888888887642 22222 2245889999
Q ss_pred EeCCcccC-------CcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCC
Q 000672 879 CDEAHMIK-------NTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHT 951 (1360)
Q Consensus 879 lDEAH~IK-------N~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~ 951 (1360)
|||||-+- ............+....+++||||--.--..|+..+|..-.+..| ...|..|
T Consensus 137 IDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~------~~sfdRp------- 203 (590)
T COG0514 137 IDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIF------RGSFDRP------- 203 (590)
T ss_pred echHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceE------EecCCCc-------
Confidence 99999874 334555556666677789999988644444444443332222111 0001000
Q ss_pred CCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhH
Q 000672 952 NSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSF 1031 (1360)
Q Consensus 952 ~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~ 1031 (1360)
.. .|+ +...
T Consensus 204 --------------------------------------Ni---------------~~~-v~~~----------------- 212 (590)
T COG0514 204 --------------------------------------NL---------------ALK-VVEK----------------- 212 (590)
T ss_pred --------------------------------------hh---------------hhh-hhhc-----------------
Confidence 00 000 0000
Q ss_pred HHHHHHHHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhccc
Q 000672 1032 FAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTY 1111 (1360)
Q Consensus 1032 ~~~l~~LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~ 1111 (1360)
T Consensus 213 -------------------------------------------------------------------------------- 212 (590)
T COG0514 213 -------------------------------------------------------------------------------- 212 (590)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHH
Q 000672 1112 KELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVER 1191 (1360)
Q Consensus 1112 ~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~ 1191 (1360)
...-.++..|.+ .....+...||||.++...+.|..+|.. .|+....++|+++.++|+.+-++
T Consensus 213 --~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~------------~g~~a~~YHaGl~~~eR~~~q~~ 275 (590)
T COG0514 213 --GEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRK------------NGISAGAYHAGLSNEERERVQQA 275 (590)
T ss_pred --ccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHH------------CCCceEEecCCCCHHHHHHHHHH
Confidence 000011111111 1122345579999999999999999996 69999999999999999999999
Q ss_pred HhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHH
Q 000672 1192 FNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 1262 (1360)
Q Consensus 1192 Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIE 1262 (1360)
|..+ .++ ++++|.|.|-|||=+....||+||+|-+...+.|=+||++|-|....+.+ |+..+.+.
T Consensus 276 f~~~---~~~-iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ail--l~~~~D~~ 340 (590)
T COG0514 276 FLND---EIK-VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAIL--LYSPEDIR 340 (590)
T ss_pred HhcC---CCc-EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEE--eeccccHH
Confidence 9974 333 68999999999999999999999999999999999999999998765544 55555444
No 78
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.53 E-value=1.1e-12 Score=153.61 Aligned_cols=138 Identities=20% Similarity=0.271 Sum_probs=116.6
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
.-.|+.+|...|.... ..|.|||-.+-..+.++...+..+ +.|++.+-++|.+++..|..+..+|...
T Consensus 297 l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rl----------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~ 364 (758)
T KOG0343|consen 297 LEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRL----------RPGIPLLALHGTMSQKKRIEVYKKFVRK 364 (758)
T ss_pred hhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhc----------CCCCceeeeccchhHHHHHHHHHHHHHh
Confidence 3468899999998655 479999999999999999999875 5799999999999999999999999873
Q ss_pred CCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHH
Q 000672 1196 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 1272 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K 1272 (1360)
. .++|++|++++.||++++.|-||-+|.|-+-..|++|+||..|++-.-...+|- ++ +-+|.++.++..|
T Consensus 365 ~----~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L--~p-sEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 365 R----AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML--TP-SEEEAMLKKLQKK 434 (758)
T ss_pred c----ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE--cc-hhHHHHHHHHHHc
Confidence 2 358999999999999999999999999999999999999999999887766643 32 3356666665554
No 79
>COG4889 Predicted helicase [General function prediction only]
Probab=99.52 E-value=6.5e-13 Score=160.95 Aligned_cols=173 Identities=22% Similarity=0.308 Sum_probs=107.8
Q ss_pred CcccccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEE
Q 000672 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 790 (1360)
Q Consensus 711 ~~~v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV 790 (1360)
+....+|..-..++||||.+++.-..+.+. .+.+|=|-..+|.|||++++-+.-.+.. .++|.+
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~----------~n~RGkLIMAcGTGKTfTsLkisEala~------~~iL~L 212 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFS----------DNDRGKLIMACGTGKTFTSLKISEALAA------ARILFL 212 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcc----------cccCCcEEEecCCCccchHHHHHHHHhh------hheEee
Confidence 445566777778999999999988876542 2445566667899999999987766533 489999
Q ss_pred ec-hhhHHHHHHHHHHhCCCCCCCeEEEEecCcch---------------hHHHHHHHHHh---h--cCCEEEEcccccc
Q 000672 791 TP-VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSR---------------DRRAELLAKWR---A--KGGVFLIGYTAFR 849 (1360)
Q Consensus 791 ~P-~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~---------------~~r~~~l~~~~---~--~~~VvItSY~~~r 849 (1360)
|| -+|+.|-.+|+..-....+.+..|+.-...++ .....++..|. + .--|++.||+++-
T Consensus 213 vPSIsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 213 VPSISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred cchHHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 99 45888866665433222223333333222111 12223333332 2 2247888998764
Q ss_pred cccccccccchhhHHHHHhhhcCCCCEEEEeCCcccCCc------chHHHHH--HhhcccceEEEEeCCC
Q 000672 850 NLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNT------RADTTQA--LKQVKCQRRIALTGSP 911 (1360)
Q Consensus 850 ~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~IKN~------~Sk~ska--l~~Lka~~RllLTGTP 911 (1360)
.+ .+....-...||+|||||||+--+. .|..++. -..+++.+|+-|||||
T Consensus 293 ~i------------~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 293 RI------------KEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred HH------------HHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 32 1222333458999999999986432 2222222 2445788999999999
No 80
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.52 E-value=6.9e-13 Score=157.13 Aligned_cols=122 Identities=22% Similarity=0.288 Sum_probs=104.2
Q ss_pred ChhHHHHHHHHHhhhc---C----CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHH
Q 000672 1117 SGKMVLLLDILTMCSN---M----GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLV 1189 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~---~----g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI 1189 (1360)
..|...|+++|..... . -++++||+.....++.++.+|.. .++++.-|+|..++.+|.+.+
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~------------~~~~~~sIhg~~tq~er~~al 380 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS------------NGYPAKSIHGDRTQIEREQAL 380 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc------------CCCCceeecchhhhhHHHHHH
Confidence 4566677777764431 1 14999999999999999999986 789999999999999999999
Q ss_pred HHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCC-CcEEEEE
Q 000672 1190 ERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT-KPVFAYR 1254 (1360)
Q Consensus 1190 ~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQk-K~V~Vyr 1254 (1360)
+.|.. +++. +||.|.+++.|||.....|||+||.|-+-..|..||||.+|.|+. +.+-.+.
T Consensus 381 ~~Fr~---g~~p-vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 381 NDFRN---GKAP-VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred HHhhc---CCcc-eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec
Confidence 99996 4444 689999999999999999999999999999999999999999998 4444444
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.52 E-value=2.4e-12 Score=171.11 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEeCchhh---HHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhC
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPT---LDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1194 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQf~~t---LdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~ 1194 (1360)
.|...|.+++... +.++|||++.... ++.|..+|.. .|+++..++|++ .+.+++|.+
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~------------~gi~v~~~hg~l-----~~~l~~F~~ 374 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLED------------LGINAELAISGF-----ERKFEKFEE 374 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHH------------CCCcEEEEeCcH-----HHHHHHHHC
Confidence 4667777777644 4689999998777 9999999986 689999999999 234599996
Q ss_pred CCCCCceEEEee---cccccccCCccC-CCEEEEEcCCC------ChhHHHHHhHhHhhc
Q 000672 1195 PLNKRVKCTLIS---TRAGSLGINLHS-ANRVIIVDGSW------NPTYDLQAIYRAWRY 1244 (1360)
Q Consensus 1195 ~~n~~v~VlLIS---TkAGgeGLNL~~-An~VIi~D~~W------NPs~~~QAiGRa~Ri 1244 (1360)
++++|++.+ |++++.|||++. ..+||||+.|- .......++||+-++
T Consensus 375 ---G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 375 ---GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred ---CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 667766655 799999999998 89999999997 555667788888643
No 82
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.52 E-value=9.5e-13 Score=153.94 Aligned_cols=139 Identities=19% Similarity=0.256 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHhhhc--CCCeEEEEeCchhhHHHHHHHHhcCCCC---CCC-------cccccCCCcEEEecCCCCHHHH
Q 000672 1118 GKMVLLLDILTMCSN--MGDKSLVFSQSIPTLDLIEFYLSKLPRP---GKQ-------GKLWKKGKDWYRLDGRTESSER 1185 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~--~g~KVLIFSQf~~tLdlLe~~L~~l~~~---~~~-------~~~~~~Gi~~~rLdGsts~~eR 1185 (1360)
-++..|..+|..... ...|+|||-...++.+.=..+|...... +.. ......+.++++++|+|++++|
T Consensus 407 LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeR 486 (708)
T KOG0348|consen 407 LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEER 486 (708)
T ss_pred hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHH
Confidence 355666676665433 2458899988888887766666542111 000 1112346679999999999999
Q ss_pred HHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHH
Q 000672 1186 QKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 1262 (1360)
Q Consensus 1186 ~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIE 1262 (1360)
......|..... .+|++|++++.||+|+...-||-||||..++.+..|+||.-|+|-+-.-.. |+.+...|
T Consensus 487 ts~f~~Fs~~~~----~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae 557 (708)
T KOG0348|consen 487 TSVFQEFSHSRR----AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE 557 (708)
T ss_pred HHHHHhhccccc----eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH
Confidence 999999997432 379999999999999999999999999999999999999999998754433 45555555
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.51 E-value=9.1e-12 Score=159.07 Aligned_cols=104 Identities=20% Similarity=0.213 Sum_probs=81.0
Q ss_pred EeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCC--HHHHHHHHHHHhCCCCCCceEEEeecccccccCCcc
Q 000672 1140 FSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTE--SSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLH 1217 (1360)
Q Consensus 1140 FSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts--~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~ 1217 (1360)
|..+....+.+++.|...+ .+.++.++||+++ ..+++++++.|.+ +++. +|++|...+.|+|++
T Consensus 432 l~~~g~G~e~~~e~l~~~f----------p~~~v~~~~~d~~~~~~~~~~~l~~f~~---g~~~-ILVgT~~iakG~d~p 497 (679)
T PRK05580 432 LVPVGPGTERLEEELAELF----------PEARILRIDRDTTRRKGALEQLLAQFAR---GEAD-ILIGTQMLAKGHDFP 497 (679)
T ss_pred eEEeeccHHHHHHHHHHhC----------CCCcEEEEeccccccchhHHHHHHHHhc---CCCC-EEEEChhhccCCCCC
Confidence 4444556777888888743 5788999999986 4678999999997 3444 589999999999999
Q ss_pred CCCEEEEEcCC---CCh---------hHHHHHhHhHhhcCCCCcEEEEEEec
Q 000672 1218 SANRVIIVDGS---WNP---------TYDLQAIYRAWRYGQTKPVFAYRLMA 1257 (1360)
Q Consensus 1218 ~An~VIi~D~~---WNP---------s~~~QAiGRa~RiGQkK~V~VyrLva 1257 (1360)
.++.|+++|.+ ..| ..+.|+.||++|.|....|.+...-.
T Consensus 498 ~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 498 NVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred CcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 99999988765 233 57899999999988777777655443
No 84
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.48 E-value=1.6e-12 Score=165.91 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=108.8
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHHHH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQ 801 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW~~ 801 (1360)
.|+|+|..+|.-.+ ..+.++|++.+||.|||+.|...|...+..+ .++++.||| ++|..+=..
T Consensus 31 el~~~qq~av~~~~-------------~~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa~Ek~~ 94 (766)
T COG1204 31 ELFNPQQEAVEKGL-------------LSDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALAEEKYE 94 (766)
T ss_pred HhhHHHHHHhhccc-------------cCCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHHHHHHH
Confidence 89999999996543 1278999999999999998887766655443 359999999 668888899
Q ss_pred HHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeC
Q 000672 802 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 881 (1360)
Q Consensus 802 Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDE 881 (1360)
+|.+|-.-+ ++|....|...... .+...++|+|+||+.+-.+..... .+....++||+||
T Consensus 95 ~~~~~~~~G---irV~~~TgD~~~~~-----~~l~~~~ViVtT~EK~Dsl~R~~~------------~~~~~V~lvViDE 154 (766)
T COG1204 95 EFSRLEELG---IRVGISTGDYDLDD-----ERLARYDVIVTTPEKLDSLTRKRP------------SWIEEVDLVVIDE 154 (766)
T ss_pred HhhhHHhcC---CEEEEecCCcccch-----hhhccCCEEEEchHHhhHhhhcCc------------chhhcccEEEEee
Confidence 998664433 78888777654322 234678999999998765431111 1223678999999
Q ss_pred CcccCCc-c-----hHHHHHHhhcccceEEEEeCCC
Q 000672 882 AHMIKNT-R-----ADTTQALKQVKCQRRIALTGSP 911 (1360)
Q Consensus 882 AH~IKN~-~-----Sk~skal~~Lka~~RllLTGTP 911 (1360)
+|.+... . +-.++.......-+.++||||-
T Consensus 155 iH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl 190 (766)
T COG1204 155 IHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATL 190 (766)
T ss_pred eeecCCcccCceehhHHHHHHhhCcceEEEEEeeec
Confidence 9999755 2 3333333333346889999994
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=7.6e-12 Score=154.62 Aligned_cols=99 Identities=23% Similarity=0.234 Sum_probs=76.5
Q ss_pred hHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHH--HHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEE
Q 000672 1146 TLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSER--QKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVI 1223 (1360)
Q Consensus 1146 tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR--~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VI 1223 (1360)
-.+.+++.|.+.+ .+.++.++|++++...+ +.+++.|.+ +++. +|++|...+.|+|+..++.|+
T Consensus 270 Gte~~~e~l~~~f----------p~~~v~~~d~d~~~~~~~~~~~l~~f~~---g~~~-ILVgT~~i~kG~d~~~v~lV~ 335 (505)
T TIGR00595 270 GTEQVEEELAKLF----------PGARIARIDSDTTSRKGAHEALLNQFAN---GKAD-ILIGTQMIAKGHHFPNVTLVG 335 (505)
T ss_pred cHHHHHHHHHhhC----------CCCcEEEEecccccCccHHHHHHHHHhc---CCCC-EEEeCcccccCCCCCcccEEE
Confidence 3577788887643 47889999999886655 899999996 3343 689999999999999999998
Q ss_pred EEcCCC---Ch---------hHHHHHhHhHhhcCCCCcEEEEEEecC
Q 000672 1224 IVDGSW---NP---------TYDLQAIYRAWRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1224 i~D~~W---NP---------s~~~QAiGRa~RiGQkK~V~VyrLva~ 1258 (1360)
++|.+- .| ..+.|+.||++|.+..-.|.|..+-..
T Consensus 336 vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 336 VLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred EEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 877652 23 568999999999887776765544333
No 86
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.45 E-value=1.1e-12 Score=155.61 Aligned_cols=111 Identities=25% Similarity=0.323 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCC
Q 000672 1119 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1198 (1360)
Q Consensus 1119 Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~ 1198 (1360)
|++.|.++++.+. -...||||....-++-|..+|.. .|+++..|.|.|++.+|..+++.++. -
T Consensus 259 klq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~s------------sG~d~~~ISgaM~Q~~Rl~a~~~lr~---f 321 (980)
T KOG4284|consen 259 KLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKS------------SGLDVTFISGAMSQKDRLLAVDQLRA---F 321 (980)
T ss_pred HHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhc------------cCCCeEEeccccchhHHHHHHHHhhh---c
Confidence 6666666666543 25689999999999999999986 79999999999999999999999985 5
Q ss_pred CceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCC
Q 000672 1199 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT 1247 (1360)
Q Consensus 1199 ~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQk 1247 (1360)
.++ +|+||+..+.||+-..+|.||++|+|-+-..+..||||++|+|..
T Consensus 322 ~~r-ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~ 369 (980)
T KOG4284|consen 322 RVR-ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAH 369 (980)
T ss_pred eEE-EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhccccccc
Confidence 676 699999999999999999999999999999999999999999976
No 87
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.45 E-value=2.7e-12 Score=145.76 Aligned_cols=116 Identities=23% Similarity=0.267 Sum_probs=100.5
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
+.|+..+..++..+ ...+|||||+....++|.|..-|.- .|+..--++|...+..|+.+++.|+.
T Consensus 449 ~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l------------~gi~~q~lHG~r~Q~DrE~al~~~ks-- 513 (629)
T KOG0336|consen 449 SEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCL------------KGISSQSLHGNREQSDREMALEDFKS-- 513 (629)
T ss_pred HHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhh------------cccchhhccCChhhhhHHHHHHhhhc--
Confidence 45666665555544 4578999999999999988776653 79999999999999999999999996
Q ss_pred CCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCc
Q 000672 1197 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKP 1249 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~ 1249 (1360)
+.++ +|++|+.++.||++....||++||.|-|-..+..|+||++|-|.+-.
T Consensus 514 -G~vr-ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 514 -GEVR-ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred -CceE-EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 6676 68999999999999999999999999999999999999999997743
No 88
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.44 E-value=1.3e-11 Score=139.00 Aligned_cols=115 Identities=20% Similarity=0.276 Sum_probs=102.1
Q ss_pred ChhHHHHHHHHHhhhc-CCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1117 SGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~-~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
..|-.+|..+|..... ....++||.|.+.+..+|...|+. -++....+++.|++++|-..+.+|+.
T Consensus 236 ~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~------------le~r~~~lHs~m~Q~eR~~aLsrFrs- 302 (442)
T KOG0340|consen 236 DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKN------------LEVRVVSLHSQMPQKERLAALSRFRS- 302 (442)
T ss_pred hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhh------------hceeeeehhhcchHHHHHHHHHHHhh-
Confidence 4566778888887665 456799999999999999999996 47889999999999999999999997
Q ss_pred CCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCC
Q 000672 1196 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT 1247 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQk 1247 (1360)
+.++ +||.|++++.||+++...-||++|.|-.|-.++.|+||..|-|..
T Consensus 303 --~~~~-iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~ 351 (442)
T KOG0340|consen 303 --NAAR-ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRK 351 (442)
T ss_pred --cCcc-EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCC
Confidence 3454 689999999999999999999999999999999999999988876
No 89
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.42 E-value=7.1e-12 Score=145.99 Aligned_cols=111 Identities=22% Similarity=0.317 Sum_probs=96.3
Q ss_pred HHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCce
Q 000672 1122 LLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVK 1201 (1360)
Q Consensus 1122 ~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~ 1201 (1360)
.|..++.... .+++|||.+....++.+.-+|.- -|+.+.-++|+.++.+|-..+..|++ ..+.
T Consensus 416 ~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGL------------lgl~agElHGsLtQ~QRlesL~kFk~---~eid 478 (691)
T KOG0338|consen 416 MLASLITRTF--QDRTIVFVRTKKQAHRLRILLGL------------LGLKAGELHGSLTQEQRLESLEKFKK---EEID 478 (691)
T ss_pred HHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHH------------hhchhhhhcccccHHHHHHHHHHHHh---ccCC
Confidence 4455555444 48999999999999999888874 58899999999999999999999996 4554
Q ss_pred EEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCC-CcE
Q 000672 1202 CTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT-KPV 1250 (1360)
Q Consensus 1202 VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQk-K~V 1250 (1360)
+||+|++++.||++.+..+||+|+.|-..-+|.+|+||..|-|.. +.|
T Consensus 479 -vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsV 527 (691)
T KOG0338|consen 479 -VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSV 527 (691)
T ss_pred -EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceE
Confidence 699999999999999999999999999999999999999998865 444
No 90
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.40 E-value=2.2e-12 Score=137.39 Aligned_cols=163 Identities=21% Similarity=0.233 Sum_probs=111.4
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHH
Q 000672 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNW 799 (1360)
Q Consensus 721 ~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW 799 (1360)
..+++|||.+++..++. ...++++..++|+|||..++.++........ .+++||++| ..++.||
T Consensus 6 ~~~~~~~Q~~~~~~~~~-------------~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~ 70 (201)
T smart00487 6 FEPLRPYQKEAIEALLS-------------GLRDVILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVPTRELAEQW 70 (201)
T ss_pred CCCCCHHHHHHHHHHHc-------------CCCcEEEECCCCCchhHHHHHHHHHHhcccC--CCcEEEEeCCHHHHHHH
Confidence 35689999999988852 1178999999999999987777766654432 368999999 6788999
Q ss_pred HHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcC-CEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEE
Q 000672 800 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKG-GVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1360)
Q Consensus 800 ~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~-~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVI 878 (1360)
..++.++++.. .......+++.... ..+..+.... ++++++|..+........ .....++++|
T Consensus 71 ~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~t~~~l~~~~~~~~------------~~~~~~~~iI 134 (201)
T smart00487 71 AEELKKLGPSL-GLKVVGLYGGDSKR---EQLRKLESGKTDILVTTPGRLLDLLENDL------------LELSNVDLVI 134 (201)
T ss_pred HHHHHHHhccC-CeEEEEEeCCcchH---HHHHHHhcCCCCEEEeChHHHHHHHHcCC------------cCHhHCCEEE
Confidence 99999988642 11344445544322 2223333444 899999987764321110 1223788999
Q ss_pred EeCCcccCC-cc-hHHHHHHhhc-ccceEEEEeCCCCCC
Q 000672 879 CDEAHMIKN-TR-ADTTQALKQV-KCQRRIALTGSPLQN 914 (1360)
Q Consensus 879 lDEAH~IKN-~~-Sk~skal~~L-ka~~RllLTGTPiqN 914 (1360)
+||+|++.+ .. ......+..+ ...+++++||||..+
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchh
Confidence 999999985 33 3333344444 578999999999643
No 91
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.40 E-value=2.8e-11 Score=156.16 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=92.2
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
+.++|||......++.+...|.... ..++.++.++|+++.++|.++++.|.. +..+ +|+||.+++.|
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~---------~~~~~v~pLHg~L~~~eq~~~~~~~~~---G~rk-VlVATnIAErg 275 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERL---------DSDVLICPLYGELSLAAQDRAIKPDPQ---GRRK-VVLATNIAETS 275 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhc---------CCCcEEEEecCCCCHHHHHHHHhhccc---CCeE-EEEecchHhhc
Confidence 4679999999999999999997521 136889999999999999999999985 3444 68999999999
Q ss_pred CCccCCCEEEEEcCC----CChhH--------------HHHHhHhHhhcCCCCcEEEEEEecCCC
Q 000672 1214 INLHSANRVIIVDGS----WNPTY--------------DLQAIYRAWRYGQTKPVFAYRLMAHGT 1260 (1360)
Q Consensus 1214 LNL~~An~VIi~D~~----WNPs~--------------~~QAiGRa~RiGQkK~V~VyrLva~gT 1260 (1360)
|++.+.++||.++.+ |||.. ..||.||++|. ++=..|+|+++..
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 999999999998875 55544 68999999886 5778899987653
No 92
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.40 E-value=4e-11 Score=159.86 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhhcCCCeEEEEeCch---hhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1120 MVLLLDILTMCSNMGDKSLVFSQSI---PTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1120 l~~L~eiL~~~~~~g~KVLIFSQf~---~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
...|.++|+.. +.++|||++.. ..++.|...|.. .|+++..++|+++ +..+++|.+
T Consensus 315 ~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~------------~g~~a~~lhg~~~----~~~l~~Fr~-- 373 (1171)
T TIGR01054 315 KETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLEN------------HGVKAVAYHATKP----KEDYEKFAE-- 373 (1171)
T ss_pred HHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHh------------CCceEEEEeCCCC----HHHHHHHHc--
Confidence 44566777643 57899999998 899999999986 6899999999986 368999996
Q ss_pred CCCceEEEee---cccccccCCccC-CCEEEEEcCCC
Q 000672 1197 NKRVKCTLIS---TRAGSLGINLHS-ANRVIIVDGSW 1229 (1360)
Q Consensus 1197 n~~v~VlLIS---TkAGgeGLNL~~-An~VIi~D~~W 1229 (1360)
++++|++.+ |.+++.|||++. .++||+||+|-
T Consensus 374 -G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 374 -GEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred -CCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 667766655 689999999998 79999999984
No 93
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.39 E-value=1.5e-11 Score=139.14 Aligned_cols=125 Identities=22% Similarity=0.324 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCC
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n 1197 (1360)
.|+.+|.++-. ...- ...||||+...++.+|...|.. .|..+..++|.+...+|..++++|+.+
T Consensus 316 ~K~~~l~~lyg-~~ti-gqsiIFc~tk~ta~~l~~~m~~------------~Gh~V~~l~G~l~~~~R~~ii~~Fr~g-- 379 (477)
T KOG0332|consen 316 DKYQALVNLYG-LLTI-GQSIIFCHTKATAMWLYEEMRA------------EGHQVSLLHGDLTVEQRAAIIDRFREG-- 379 (477)
T ss_pred hHHHHHHHHHh-hhhh-hheEEEEeehhhHHHHHHHHHh------------cCceeEEeeccchhHHHHHHHHHHhcC--
Confidence 57777777432 2222 3678999999999999999986 799999999999999999999999974
Q ss_pred CCceEEEeecccccccCCccCCCEEEEEcCCC------ChhHHHHHhHhHhhcCCCCcEEEEEEe-cCCCHH
Q 000672 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSW------NPTYDLQAIYRAWRYGQTKPVFAYRLM-AHGTME 1262 (1360)
Q Consensus 1198 ~~v~VlLISTkAGgeGLNL~~An~VIi~D~~W------NPs~~~QAiGRa~RiGQkK~V~VyrLv-a~gTIE 1262 (1360)
..+ +||+|.+.+.||+.+..+.||+||.|- .|..|.+||||.+|+|-+- .+++|+ ...+++
T Consensus 380 -~~k-VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG--~a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 380 -KEK-VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG--LAINLVDDKDSMN 447 (477)
T ss_pred -cce-EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc--eEEEeecccCcHH
Confidence 344 599999999999999999999999974 5678999999999999653 334466 344544
No 94
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.38 E-value=9.6e-12 Score=148.36 Aligned_cols=120 Identities=23% Similarity=0.242 Sum_probs=105.8
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
.+|+.++.+++.... ...+|||.|+...+..|...|.. ..++++..++|..++.+|...+++|+.
T Consensus 372 ~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~-----------~~~i~v~vIh~e~~~~qrde~~~~FR~-- 436 (593)
T KOG0344|consen 372 KGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEI-----------YDNINVDVIHGERSQKQRDETMERFRI-- 436 (593)
T ss_pred hhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhh-----------ccCcceeeEecccchhHHHHHHHHHhc--
Confidence 478999999998754 46899999999999999988852 378999999999999999999999997
Q ss_pred CCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCC-CcEEEE
Q 000672 1197 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT-KPVFAY 1253 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQk-K~V~Vy 1253 (1360)
+.++ +|++|.+.+.||++.++|.||+||.|-.-..++.+|||++|-|+. +.+..|
T Consensus 437 -g~Iw-vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 437 -GKIW-VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred -cCee-EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 6777 589999999999999999999999999999999999999999987 444444
No 95
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.38 E-value=3.9e-12 Score=127.52 Aligned_cols=139 Identities=17% Similarity=0.143 Sum_probs=95.7
Q ss_pred ceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhh-HHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHH
Q 000672 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLA 832 (1360)
Q Consensus 754 GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sL-l~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~ 832 (1360)
++++.+++|+|||.+++.++..+.... ..+++||+||... +.+|...+.++... .+.+..+.+....... ..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~--~~~~~lv~~p~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~ 74 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAERLKELFGE---GIKVGYLIGGTSIKQQ--EK 74 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc--cCCCEEEEcCcHHHHHHHHHHHHHHhhC---CcEEEEEecCcchhHH--HH
Confidence 689999999999999999998876652 3469999999774 55667777777753 2445444443322211 12
Q ss_pred HHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCcccCCcchHHH---HHHhhcccceEEEEeC
Q 000672 833 KWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTT---QALKQVKCQRRIALTG 909 (1360)
Q Consensus 833 ~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~IKN~~Sk~s---kal~~Lka~~RllLTG 909 (1360)
.+.....+++++|+++....... ......+++||+||+|.+.+...... .........+++++||
T Consensus 75 ~~~~~~~i~i~t~~~~~~~~~~~------------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~sa 142 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLDELERL------------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSA 142 (144)
T ss_pred HhcCCCCEEEECcHHHHHHHHcC------------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEec
Confidence 33467889999999775321100 01234799999999999987765443 3344457889999999
Q ss_pred CC
Q 000672 910 SP 911 (1360)
Q Consensus 910 TP 911 (1360)
||
T Consensus 143 Tp 144 (144)
T cd00046 143 TP 144 (144)
T ss_pred cC
Confidence 99
No 96
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.37 E-value=6.9e-13 Score=122.54 Aligned_cols=73 Identities=36% Similarity=0.471 Sum_probs=68.5
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcC
Q 000672 1169 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYG 1245 (1360)
Q Consensus 1169 ~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiG 1245 (1360)
.|+.+..++|+++..+|+.+++.|+.+.. .+|++|.++++|||++.+++||+++++||+..+.|++||++|.|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~----~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEI----RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSS----SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCc----eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 68999999999999999999999997432 37889999999999999999999999999999999999999998
No 97
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.37 E-value=7.8e-12 Score=141.14 Aligned_cols=129 Identities=24% Similarity=0.303 Sum_probs=108.4
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..|+..|++.|+. ...+||||+.-..-.|.|.++|-- .|+..+.|+|+-.+++|...|..|+.+.
T Consensus 407 EaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLl------------KGVEavaIHGGKDQedR~~ai~afr~gk 471 (610)
T KOG0341|consen 407 EAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLL------------KGVEAVAIHGGKDQEDRHYAIEAFRAGK 471 (610)
T ss_pred hhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHH------------ccceeEEeecCcchhHHHHHHHHHhcCC
Confidence 4688888888863 457999999999999999999973 7999999999999999999999999843
Q ss_pred CCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHH
Q 000672 1197 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIY 1266 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~ 1266 (1360)
. -+|+.|++++-||++++..|||+||.|-.--++..||||.+|-|.+-- ...|+-+++-+..++
T Consensus 472 K----DVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esvLl 535 (610)
T KOG0341|consen 472 K----DVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESVLL 535 (610)
T ss_pred C----ceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce--eeeeecccchHHHHH
Confidence 2 269999999999999999999999999999999999999999987632 233555665554444
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.37 E-value=2.4e-10 Score=146.69 Aligned_cols=315 Identities=17% Similarity=0.239 Sum_probs=206.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHH-HHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-NWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~-QW~ 800 (1360)
..--|-|..++.-..+-+. ....---++|-++|.|||=.|+=.+..... +.+-+.|+||++|+. |-.
T Consensus 593 yeET~DQl~AI~eVk~DM~--------~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~----~GKQVAvLVPTTlLA~QHy 660 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDME--------SGKPMDRLICGDVGFGKTEVAMRAAFKAVM----DGKQVAVLVPTTLLAQQHY 660 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhc--------cCCcchheeecCcCCcHHHHHHHHHHHHhc----CCCeEEEEcccHHhHHHHH
Confidence 4455789999987765432 134555689999999999887733322222 236899999999766 455
Q ss_pred HHHHHhCCCCCCCeEEEEecCcchh-HHHHHHHHH-hhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEE
Q 000672 801 QEFMKWRPSELKPLRVFMLEDVSRD-RRAELLAKW-RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V~~~~g~~~~-~r~~~l~~~-~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVI 878 (1360)
+.|..-+.+ .|++|-.++..... .....+... ...-+|+|=|+..+..-. .+ .+.++||
T Consensus 661 ~tFkeRF~~--fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv--------~F---------kdLGLlI 721 (1139)
T COG1197 661 ETFKERFAG--FPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDV--------KF---------KDLGLLI 721 (1139)
T ss_pred HHHHHHhcC--CCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCc--------EE---------ecCCeEE
Confidence 556543322 46888887765433 233333333 234467777776554211 00 1568999
Q ss_pred EeCCcccCCcchHHHHHHhhcc-cceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCChHH
Q 000672 879 CDEAHMIKNTRADTTQALKQVK-CQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSED 957 (1360)
Q Consensus 879 lDEAH~IKN~~Sk~skal~~Lk-a~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~~~ 957 (1360)
+||=|++.-. .-..++.|+ .-..+-||||||+..+.
T Consensus 722 IDEEqRFGVk---~KEkLK~Lr~~VDvLTLSATPIPRTL~---------------------------------------- 758 (1139)
T COG1197 722 IDEEQRFGVK---HKEKLKELRANVDVLTLSATPIPRTLN---------------------------------------- 758 (1139)
T ss_pred EechhhcCcc---HHHHHHHHhccCcEEEeeCCCCcchHH----------------------------------------
Confidence 9999998533 234566774 45889999999986542
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccccchHHHHhhHHHHHHH
Q 000672 958 VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 1037 (1360)
Q Consensus 958 ~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~~~~~~~~~s~~~~l~~ 1037 (1360)
-.+.+ -|..+.+ .-||.....|.....+..-
T Consensus 759 ------------Msm~G---iRdlSvI--~TPP~~R~pV~T~V~~~d~-------------------------------- 789 (1139)
T COG1197 759 ------------MSLSG---IRDLSVI--ATPPEDRLPVKTFVSEYDD-------------------------------- 789 (1139)
T ss_pred ------------HHHhc---chhhhhc--cCCCCCCcceEEEEecCCh--------------------------------
Confidence 00100 1222222 3455555444332221110
Q ss_pred HHHHhcCcchhhhccccCCCCCccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhccccccccC
Q 000672 1038 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 1117 (1360)
Q Consensus 1038 LRqic~hP~Ll~~~~~~~~~~~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S 1117 (1360)
T Consensus 790 -------------------------------------------------------------------------------- 789 (1139)
T COG1197 790 -------------------------------------------------------------------------------- 789 (1139)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCC
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n 1197 (1360)
..+.+.|..-..+|.+|-.-.+.+..+..+...|+.+. ...++...+|.|+..+-++++..|.+
T Consensus 790 ---~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LV----------PEarI~vaHGQM~e~eLE~vM~~F~~--- 853 (1139)
T COG1197 790 ---LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELV----------PEARIAVAHGQMRERELEEVMLDFYN--- 853 (1139)
T ss_pred ---HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhC----------CceEEEEeecCCCHHHHHHHHHHHHc---
Confidence 01222232233457788777888889999999998753 45678999999999999999999996
Q ss_pred CCceEEEeecccccccCCccCCCEEEEEcC-CCChhHHHHHhHhHhhcCCCCcEEEEEEecC
Q 000672 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDG-SWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1198 ~~v~VlLISTkAGgeGLNL~~An~VIi~D~-~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~ 1258 (1360)
+++. +|+||.....||+++.||++|+-+. .+--+..-|-.|||+|-. +.-|.|-|+..
T Consensus 854 g~~d-VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 854 GEYD-VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred CCCC-EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 5555 5778889999999999999999887 468899999999999944 45677777764
No 99
>PRK09694 helicase Cas3; Provisional
Probab=99.36 E-value=1.4e-10 Score=149.94 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=83.0
Q ss_pred HHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHH----HHHHHHHhCCCCCCceE
Q 000672 1127 LTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSER----QKLVERFNEPLNKRVKC 1202 (1360)
Q Consensus 1127 L~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR----~~iI~~Fn~~~n~~v~V 1202 (1360)
+......|.++|||++.+..+..+...|+... .....+..++|.++..+| +++++.|.......-..
T Consensus 553 i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~---------~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ 623 (878)
T PRK09694 553 MIAAANAGAQVCLICNLVDDAQKLYQRLKELN---------NTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGR 623 (878)
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHhhC---------CCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCe
Confidence 33333568899999999999999999998621 123578999999999998 46788994321111124
Q ss_pred EEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCC
Q 000672 1203 TLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT 1247 (1360)
Q Consensus 1203 lLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQk 1247 (1360)
+||+|.+...|||+ .++.+|....| ...++||+||++|.|.+
T Consensus 624 ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 624 ILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred EEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 79999999999999 57877775554 56899999999999874
No 100
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.34 E-value=1.6e-11 Score=144.32 Aligned_cols=130 Identities=19% Similarity=0.206 Sum_probs=106.4
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
..+.||||+..+.+..|.-+|.. -+++.+.++..|.+++|-+.+++|.+.+++ +||+|++++.|
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~------------L~i~p~~LHA~M~QKqRLknLEkF~~~~~~----VLiaTDVAARG 526 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNN------------LDIPPLPLHASMIQKQRLKNLEKFKQSPSG----VLIATDVAARG 526 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhh------------cCCCCchhhHHHHHHHHHHhHHHHhcCCCe----EEEeehhhhcc
Confidence 46899999999999999999997 478889999999999999999999985433 79999999999
Q ss_pred CCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCC---------------------CHHHHHHHHHHHH
Q 000672 1214 INLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG---------------------TMEEKIYKRQVTK 1272 (1360)
Q Consensus 1214 LNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~g---------------------TIEEkI~~rq~~K 1272 (1360)
|++++..|||+|..|-..-.|+.|-||..|-+.. -|.| .|+.++ .|++.|+.....+
T Consensus 527 LDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsv-ml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeR 604 (731)
T KOG0347|consen 527 LDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSV-MLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKER 604 (731)
T ss_pred CCCCCcceEEEeecCCccceeEecccccccccCC-CeEE-EEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHH
Confidence 9999999999999999999999999999997642 2222 112111 3477777777777
Q ss_pred HHHHHHHhc
Q 000672 1273 EGLAARVVD 1281 (1360)
Q Consensus 1273 ~~La~~Vvd 1281 (1360)
-.|+..+.+
T Consensus 605 vrLA~ei~~ 613 (731)
T KOG0347|consen 605 VRLAREIDK 613 (731)
T ss_pred HHHHHHHHH
Confidence 777766644
No 101
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.31 E-value=7.6e-11 Score=139.09 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=91.6
Q ss_pred CeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccC
Q 000672 1135 DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGI 1214 (1360)
Q Consensus 1135 ~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGL 1214 (1360)
...|||+.+..-.+.|..+|.. +|++..-++++++..+|..+-..|.+ ..+. .+++|.|.+.|+
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~------------kG~~a~pYHaGL~y~eRk~vE~~F~~---q~l~-~VVTTAAL~AGV 504 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTG------------KGLKAAPYHAGLPYKERKSVERAFAA---QELA-AVVTTAALAAGV 504 (830)
T ss_pred CceEEEecchhhHHHHHHHhhc------------CCcccccccCCCcHHHHHHHHHHHhc---CCcc-eEeehhhhhcCC
Confidence 4799999999999999999985 69999999999999999999999996 4443 588999999999
Q ss_pred CccCCCEEEE----EcC-CCChhHHHHHhHhHhhcCCCCcEEEEEEecCC
Q 000672 1215 NLHSANRVII----VDG-SWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 1259 (1360)
Q Consensus 1215 NL~~An~VIi----~D~-~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~g 1259 (1360)
++++ +.||| +-. |-+|..+.|..||++|.|-...-.||-++-.|
T Consensus 505 DFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 505 DFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred CCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9985 45554 334 44999999999999999988777778787544
No 102
>PRK14701 reverse gyrase; Provisional
Probab=99.31 E-value=4.9e-10 Score=152.50 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=80.2
Q ss_pred HHHHHHHHhhhcCCCeEEEEeCchhh---HHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCC
Q 000672 1121 VLLLDILTMCSNMGDKSLVFSQSIPT---LDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1121 ~~L~eiL~~~~~~g~KVLIFSQf~~t---LdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n 1197 (1360)
..|.++|... +...|||++.... ++.|..+|.. .|+++..++|. |...+++|.+
T Consensus 320 ~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~------------~Gi~a~~~h~~-----R~~~l~~F~~--- 376 (1638)
T PRK14701 320 EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLE------------DGFKIELVSAK-----NKKGFDLFEE--- 376 (1638)
T ss_pred HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHH------------CCCeEEEecch-----HHHHHHHHHc---
Confidence 3566666543 5789999998764 5888999986 68999999984 8899999996
Q ss_pred CCceEEEeec----ccccccCCccC-CCEEEEEcCCC---ChhHHH-------------HHhHhHhhcCCC
Q 000672 1198 KRVKCTLIST----RAGSLGINLHS-ANRVIIVDGSW---NPTYDL-------------QAIYRAWRYGQT 1247 (1360)
Q Consensus 1198 ~~v~VlLIST----kAGgeGLNL~~-An~VIi~D~~W---NPs~~~-------------QAiGRa~RiGQk 1247 (1360)
++++| |++| .+++.|||++. ..+||||++|- |.-.+. |.+||++|-|..
T Consensus 377 G~~~V-LVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 377 GEIDY-LIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CCCCE-EEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 55665 5555 58899999997 99999999997 544444 455999988854
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=6.7e-10 Score=141.17 Aligned_cols=120 Identities=20% Similarity=0.172 Sum_probs=106.2
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
...|+.++++.+..+...|..|||||.+....+.|..+|.. .|+++..++|.....+|+.+...|+.+
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~------------~gi~h~vLnak~~q~Ea~iia~Ag~~G 493 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK------------ENIKHQVLNAKFHEKEAQIIAEAGRPG 493 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH------------cCCCeEeecCCCChHHHHHHHhCCCCC
Confidence 34699999999999999999999999999999999999996 799999999999999999999999973
Q ss_pred CCCCceEEEeecccccccCCcc--------------------------------------CCCEEEEEcCCCChhHHHHH
Q 000672 1196 LNKRVKCTLISTRAGSLGINLH--------------------------------------SANRVIIVDGSWNPTYDLQA 1237 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~--------------------------------------~An~VIi~D~~WNPs~~~QA 1237 (1360)
. ++|+|..+|.|+++. +.=+||.-+.+=|-..+.|.
T Consensus 494 ---~---VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QL 567 (896)
T PRK13104 494 ---A---VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQL 567 (896)
T ss_pred ---c---EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHh
Confidence 2 699999999999966 23478888999999999999
Q ss_pred hHhHhhcCCCCcEEEE
Q 000672 1238 IYRAWRYGQTKPVFAY 1253 (1360)
Q Consensus 1238 iGRa~RiGQkK~V~Vy 1253 (1360)
.||++|.|..-....|
T Consensus 568 rGRaGRQGDPGss~f~ 583 (896)
T PRK13104 568 RGRAGRQGDPGSSRFY 583 (896)
T ss_pred ccccccCCCCCceEEE
Confidence 9999999988554443
No 104
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.30 E-value=1.2e-10 Score=150.60 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=91.3
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
+..+|||......++.+...|.... ..++.+..++|+++.++|..++..|.. +..+ +|++|.++..|
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~---------~~~~~v~~Lhg~l~~~eq~~~~~~~~~---G~rk-VlvATnIAErs 278 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRV---------ASDVLLCPLYGALSLAEQQKAILPAPA---GRRK-VVLATNIAETS 278 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhc---------cCCceEEEeeCCCCHHHHHHHhccccC---CCeE-EEEecchHHhc
Confidence 5689999999999999999998521 146788999999999999999998875 4444 79999999999
Q ss_pred CCccCCCEEEEEcCC----CCh--------------hHHHHHhHhHhhcCCCCcEEEEEEecCCCH
Q 000672 1214 INLHSANRVIIVDGS----WNP--------------TYDLQAIYRAWRYGQTKPVFAYRLMAHGTM 1261 (1360)
Q Consensus 1214 LNL~~An~VIi~D~~----WNP--------------s~~~QAiGRa~RiGQkK~V~VyrLva~gTI 1261 (1360)
|++.+.++||.++.+ |+| +...||.||++|. .+-..|+|+++...
T Consensus 279 LtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 279 LTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred ccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 999999999996654 332 3578999998886 47889999986543
No 105
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.29 E-value=3e-10 Score=132.41 Aligned_cols=127 Identities=24% Similarity=0.303 Sum_probs=110.4
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..|+.+|+.-|..... ..+||||..-....+-|...|.- +|+++..++|++.+.+|.+.+..|+...
T Consensus 452 ~~Kl~wl~~~L~~f~S-~gkvlifVTKk~~~e~i~a~Lkl------------k~~~v~llhgdkdqa~rn~~ls~fKkk~ 518 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSS-EGKVLIFVTKKADAEEIAANLKL------------KGFNVSLLHGDKDQAERNEVLSKFKKKR 518 (731)
T ss_pred HHHHHHHHHHhhhhcc-CCcEEEEEeccCCHHHHHHHhcc------------ccceeeeecCchhhHHHHHHHHHHhhcC
Confidence 3588888888776655 35999999999999999999874 7999999999999999999999999742
Q ss_pred CCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHH
Q 000672 1197 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 1262 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIE 1262 (1360)
.. +|+.|+++..|+++....+||+||.--.-....|+|||.+|-|-+ -..|.|+++-..+
T Consensus 519 ---~~-VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 519 ---KP-VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred ---Cc-eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 22 689999999999999999999999999999999999999999987 5678889876555
No 106
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=4.2e-10 Score=142.32 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=101.1
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..|+.+|.+.+......|..|||||.+....+.|...|.. .|+++..++|.....++..+..+|+.
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~------------~gi~~~~Lna~~~~~Ea~ii~~ag~~-- 488 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDE------------AGIPHAVLNAKNHAKEAEIIMNAGQR-- 488 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH------------CCCCeeEecCCcHHHHHHHHHhcCCC--
Confidence 4689999999988888899999999999999999999986 68999999999886666666666654
Q ss_pred CCCceEEEeecccccccCCcc---CCC-----EEEEEcCCCChhHHHHHhHhHhhcCCCCcE
Q 000672 1197 NKRVKCTLISTRAGSLGINLH---SAN-----RVIIVDGSWNPTYDLQAIYRAWRYGQTKPV 1250 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~---~An-----~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V 1250 (1360)
+. ++|+|..+|.|+++. .+. +||.++.|-|+..+.|++||++|.|..-..
T Consensus 489 -g~---VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 489 -GA---VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred -ce---EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 32 699999999999985 667 999999999999999999999999988444
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.28 E-value=8.8e-10 Score=139.73 Aligned_cols=134 Identities=19% Similarity=0.137 Sum_probs=112.3
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
..+++..|++.|..+...|.++|||+.....++.|..+|.. .|+++..++|.++..+|.+++..|..
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~------------~gi~~~~lh~~~~~~eR~~~l~~fr~- 490 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKE------------LGIKVRYLHSEIDTLERVEIIRDLRL- 490 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhh------------hccceeeeeCCCCHHHHHHHHHHHhc-
Confidence 45788899999998888899999999999999999999986 58899999999999999999999986
Q ss_pred CCCCceEEEeecccccccCCccCCCEEEEEc-----CCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCC--HHHHHHHH
Q 000672 1196 LNKRVKCTLISTRAGSLGINLHSANRVIIVD-----GSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT--MEEKIYKR 1268 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~~An~VIi~D-----~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gT--IEEkI~~r 1268 (1360)
+.+. +|++|...++|++++.++.||++| .+-+...++|++||+.|.. +-.|+.|+...| +...|.+.
T Consensus 491 --G~i~-VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 491 --GEFD-VLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred --CCce-EEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCCHHHHHHHHHH
Confidence 4554 578999999999999999999999 5668889999999999973 233555555444 55555544
No 108
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.24 E-value=2e-11 Score=112.35 Aligned_cols=73 Identities=34% Similarity=0.491 Sum_probs=67.9
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcC
Q 000672 1169 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYG 1245 (1360)
Q Consensus 1169 ~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiG 1245 (1360)
.++.+..++|+++..+|..+++.|+++.. .+|++|.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 10 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~----~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 10 LGIKVARLHGGLSQEEREEILEKFNNGKI----KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHcCCC----eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 47889999999999999999999997432 47899999999999999999999999999999999999999987
No 109
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=2.9e-09 Score=135.37 Aligned_cols=119 Identities=20% Similarity=0.149 Sum_probs=102.7
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..|+.+|.+.+..+...|..|||||.+....+.|...|.. .|+++..++|. ..+|+..+..|...+
T Consensus 413 ~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~------------~gi~~~vLnak--q~eREa~Iia~Ag~~ 478 (830)
T PRK12904 413 KEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKK------------AGIPHNVLNAK--NHEREAEIIAQAGRP 478 (830)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------CCCceEeccCc--hHHHHHHHHHhcCCC
Confidence 4699999999998888899999999999999999999986 68999999996 679999999998632
Q ss_pred CCCceEEEeecccccccCCccC--------------------------------------CCEEEEEcCCCChhHHHHHh
Q 000672 1197 NKRVKCTLISTRAGSLGINLHS--------------------------------------ANRVIIVDGSWNPTYDLQAI 1238 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~--------------------------------------An~VIi~D~~WNPs~~~QAi 1238 (1360)
.. ++|+|..+|.|+++.- .=+||.-..+=|-..+.|..
T Consensus 479 ---g~-VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~Qlr 554 (830)
T PRK12904 479 ---GA-VTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLR 554 (830)
T ss_pred ---ce-EEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhh
Confidence 22 6999999999988652 44888889999999999999
Q ss_pred HhHhhcCCCCcEEEE
Q 000672 1239 YRAWRYGQTKPVFAY 1253 (1360)
Q Consensus 1239 GRa~RiGQkK~V~Vy 1253 (1360)
||++|.|..-....|
T Consensus 555 GRagRQGdpGss~f~ 569 (830)
T PRK12904 555 GRSGRQGDPGSSRFY 569 (830)
T ss_pred cccccCCCCCceeEE
Confidence 999999988555444
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=1.3e-08 Score=129.43 Aligned_cols=118 Identities=17% Similarity=0.137 Sum_probs=104.7
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
...|+.++++-+..+...|..|||||.+....+.|..+|.. .|+++..+++..+..+|..+...|+.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~------------~gi~~~vLnak~~~~Ea~ii~~Ag~~- 497 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVK------------EKIPHEVLNAKFHEREAEIVAQAGRT- 497 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHH------------CCCCeEeccCcccHHHHHHHHhCCCC-
Confidence 35799999999999999999999999999999999999986 68999999999999999999999996
Q ss_pred CCCCceEEEeecccccccCCcc-------------------------------------CCCEEEEEcCCCChhHHHHHh
Q 000672 1196 LNKRVKCTLISTRAGSLGINLH-------------------------------------SANRVIIVDGSWNPTYDLQAI 1238 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~-------------------------------------~An~VIi~D~~WNPs~~~QAi 1238 (1360)
+. ++|+|..+|.|+++. +.=+||.-..+=|-..+.|..
T Consensus 498 --G~---VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLr 572 (908)
T PRK13107 498 --GA---VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLR 572 (908)
T ss_pred --Cc---EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhh
Confidence 33 699999999999966 234889999999999999999
Q ss_pred HhHhhcCCCCcEE
Q 000672 1239 YRAWRYGQTKPVF 1251 (1360)
Q Consensus 1239 GRa~RiGQkK~V~ 1251 (1360)
||++|.|..-...
T Consensus 573 GRaGRQGDPGss~ 585 (908)
T PRK13107 573 GRAGRQGDAGSSR 585 (908)
T ss_pred cccccCCCCCcee
Confidence 9999999874433
No 111
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.15 E-value=9.7e-11 Score=130.05 Aligned_cols=120 Identities=22% Similarity=0.344 Sum_probs=100.0
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
+.|+-.|-.++..+.- ...||||+++...++|+.-+.. -|+..++++..|.++.|..+...|.+
T Consensus 307 ~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITe------------lGyscyyiHakM~Q~hRNrVFHdFr~-- 370 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITE------------LGYSCYYIHAKMAQEHRNRVFHDFRN-- 370 (459)
T ss_pred hhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHh------------ccchhhHHHHHHHHhhhhhhhhhhhc--
Confidence 3455555555544322 5689999999999999998886 48899999999999999999999996
Q ss_pred CCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEe
Q 000672 1197 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLM 1256 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLv 1256 (1360)
+.++ .|++|+..-.||+.|+.|.||+||.|-|+-.+..||||.+|+|-- -....|+
T Consensus 371 -G~cr-nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl--GlAInLi 426 (459)
T KOG0326|consen 371 -GKCR-NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL--GLAINLI 426 (459)
T ss_pred -cccc-eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc--ceEEEEE
Confidence 6676 588899999999999999999999999999999999999999964 2334444
No 112
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.13 E-value=3.1e-08 Score=111.87 Aligned_cols=119 Identities=17% Similarity=0.157 Sum_probs=90.3
Q ss_pred HHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCce
Q 000672 1122 LLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVK 1201 (1360)
Q Consensus 1122 ~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~ 1201 (1360)
.|..+|+.....|..++||.....++..+...|+... .......++... ..|.+.+.+|++ +.+.
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~----------~~~~i~~Vhs~d--~~R~EkV~~fR~---G~~~ 357 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL----------PKETIASVHSED--QHRKEKVEAFRD---GKIT 357 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC----------CccceeeeeccC--ccHHHHHHHHHc---CceE
Confidence 4557777778889999999999999999999996421 223334454444 379999999996 5554
Q ss_pred EEEeecccccccCCccCCCEEEEEcCC--CChhHHHHHhHhHhhcCCCCcEEEEEEe
Q 000672 1202 CTLISTRAGSLGINLHSANRVIIVDGS--WNPTYDLQAIYRAWRYGQTKPVFAYRLM 1256 (1360)
Q Consensus 1202 VlLISTkAGgeGLNL~~An~VIi~D~~--WNPs~~~QAiGRa~RiGQkK~V~VyrLv 1256 (1360)
+|++|.....|+.++..+..|+=.-. ++.+...|.-||++|---.-.-.|+.|-
T Consensus 358 -lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 358 -LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred -EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 79999999999999999988886555 8899999999999996543222344333
No 113
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.13 E-value=1.5e-08 Score=127.24 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=98.6
Q ss_pred CCCCcceEEEeCCCchHHHHHHHHHHHHHHhc------ccCCCceEEEec-hhhHHHHHHHHHHhCCCCCCCeEEEEecC
Q 000672 749 GDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV------NLGLRTALIVTP-VNVLHNWKQEFMKWRPSELKPLRVFMLED 821 (1360)
Q Consensus 749 ~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~------~~~~k~~LIV~P-~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g 821 (1360)
+....++|++.++|.|||..+...|...+... ..+.-+++-|+| ++|...-.+-|.+-+.. ..+.|..+.|
T Consensus 123 Y~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~--~gi~v~ELTG 200 (1230)
T KOG0952|consen 123 YKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP--LGISVRELTG 200 (1230)
T ss_pred hcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccc--ccceEEEecC
Confidence 35678999999999999988776666655531 112347888999 55654433333322211 2378888887
Q ss_pred cchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCcccCCcc-----hHHHHHH
Q 000672 822 VSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTR-----ADTTQAL 896 (1360)
Q Consensus 822 ~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~IKN~~-----Sk~skal 896 (1360)
.....+.+. ...+|+|||++-+--.+.. ...+ ..+.....+||+||.|.+.... +..++.+
T Consensus 201 D~ql~~tei-----~~tqiiVTTPEKwDvvTRk-~~~d--------~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtl 266 (1230)
T KOG0952|consen 201 DTQLTKTEI-----ADTQIIVTTPEKWDVVTRK-SVGD--------SALFSLVRLVIIDEVHLLHDDRGPVLETIVARTL 266 (1230)
T ss_pred cchhhHHHH-----HhcCEEEecccceeeeeee-eccc--------hhhhhheeeEEeeeehhhcCcccchHHHHHHHHH
Confidence 765555442 3568999999877433211 1111 1122356789999999997654 3444444
Q ss_pred hhc----ccceEEEEeCCCCCCchhhHHhhhhhhccCC
Q 000672 897 KQV----KCQRRIALTGSPLQNNLMEYYCMVDFVREGF 930 (1360)
Q Consensus 897 ~~L----ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~ 930 (1360)
+.. ..-|.++||||- + | +-.+-.||+.++
T Consensus 267 r~vessqs~IRivgLSATl-P-N---~eDvA~fL~vn~ 299 (1230)
T KOG0952|consen 267 RLVESSQSMIRIVGLSATL-P-N---YEDVARFLRVNP 299 (1230)
T ss_pred HHHHhhhhheEEEEeeccC-C-C---HHHHHHHhcCCC
Confidence 333 456789999994 2 2 334455665543
No 114
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=4.2e-08 Score=125.27 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=99.8
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..|+.+|++.+......|..|||||.+....+.|..+|.. .|+++..|++ ...+|+..+..|...+
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~------------~gI~h~vLna--kq~~REa~Iia~AG~~ 646 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRA------------KRIAHNVLNA--KQHDREAEIVAEAGQK 646 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHH------------cCCCceeecC--CHHHhHHHHHHhcCCC
Confidence 4699999999998888899999999999999999999986 6899999997 5779999999998632
Q ss_pred CCCceEEEeecccccccCCccC---CC-----EEEEEcCCCChhHHHHHhHhHhhcCCCCc
Q 000672 1197 NKRVKCTLISTRAGSLGINLHS---AN-----RVIIVDGSWNPTYDLQAIYRAWRYGQTKP 1249 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~---An-----~VIi~D~~WNPs~~~QAiGRa~RiGQkK~ 1249 (1360)
.. ++|+|..+|.|+++.- +. +||.++.+-+...+.|++||++|.|..-.
T Consensus 647 ---g~-VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGs 703 (1025)
T PRK12900 647 ---GA-VTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGE 703 (1025)
T ss_pred ---Ce-EEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcc
Confidence 22 6999999999999983 32 44888999999999999999999998743
No 115
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.12 E-value=1.5e-09 Score=125.38 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCC
Q 000672 1119 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1198 (1360)
Q Consensus 1119 Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~ 1198 (1360)
|+..+.-+|+--. -..|.|||.+..+..-.|.-+|.. .|++.+.+.|.++...|..++.+||. +
T Consensus 254 KflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeq------------FGiksciLNseLP~NSR~Hii~QFNk---G 317 (569)
T KOG0346|consen 254 KFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQ------------FGIKSCILNSELPANSRCHIIEQFNK---G 317 (569)
T ss_pred hHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHH------------hCcHhhhhcccccccchhhHHHHhhC---c
Confidence 4555555554221 136999999999999999999986 79999999999999999999999997 4
Q ss_pred CceEEEeecc--------------------------c---------ccccCCccCCCEEEEEcCCCChhHHHHHhHhHhh
Q 000672 1199 RVKCTLISTR--------------------------A---------GSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1243 (1360)
Q Consensus 1199 ~v~VlLISTk--------------------------A---------GgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~R 1243 (1360)
-+.+ ||.|+ + .+.||+++..+.||+||.|-++..|+.|+||..|
T Consensus 318 ~Ydi-vIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaR 396 (569)
T KOG0346|consen 318 LYDI-VIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTAR 396 (569)
T ss_pred ceeE-EEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcccccc
Confidence 4554 55554 1 3579999999999999999999999999999999
Q ss_pred cCCCCcE
Q 000672 1244 YGQTKPV 1250 (1360)
Q Consensus 1244 iGQkK~V 1250 (1360)
-|.+-.+
T Consensus 397 g~n~Gta 403 (569)
T KOG0346|consen 397 GNNKGTA 403 (569)
T ss_pred CCCCCce
Confidence 8866544
No 116
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.11 E-value=7.5e-09 Score=137.25 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=88.4
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
...+|||......+..+...|.... ..++.++.++|+++.++|.++++.+. . +-+|+||.++..|
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~---------~~~~~VlpLhg~Ls~~eQ~~vf~~~~----~--rkIVLATNIAEtS 343 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRN---------LRHTEILPLYARLSNKEQQRVFQPHS----G--RRIVLATNVAETS 343 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcC---------CCCcEEEeccCCCCHHHHHHHhCCCC----C--ceEEEeccHHHhc
Confidence 4689999999999999999998631 13566889999999999988744331 1 2368999999999
Q ss_pred CCccCCCEEEEEcCC-----------------C-ChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHH
Q 000672 1214 INLHSANRVIIVDGS-----------------W-NPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 1262 (1360)
Q Consensus 1214 LNL~~An~VIi~D~~-----------------W-NPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIE 1262 (1360)
|++.+..+||.++.. | +.+...||.||++|.| +-.+|+|+++...+
T Consensus 344 LTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 344 LTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred cccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 999999999987632 2 4468899999999997 67789999876544
No 117
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.11 E-value=3.8e-09 Score=133.59 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=106.5
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..|+..|.++|.+... ..++|||++.-..++.|.+-|.+ .|+....++|..+...|...+..|+++
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~------------ag~~~~slHGgv~q~dR~sti~dfK~~- 662 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQK------------AGYNCDSLHGGVDQHDRSSTIEDFKNG- 662 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHh------------cCcchhhhcCCCchHHHHhHHHHHhcc-
Confidence 5789999999988776 67999999999999999999986 688888899999999999999999973
Q ss_pred CCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecC
Q 000672 1197 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~ 1258 (1360)
.+ .+|+.|++.+.||++.....||+||.+---..+..|.||..|-|-+- .-|.|+.+
T Consensus 663 --~~-~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 663 --VV-NLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred --Cc-eEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 33 37999999999999999999999999877788888888888888766 55566665
No 118
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.10 E-value=1.3e-09 Score=119.03 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=104.8
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhc-ccCCCceEEEec-hhhHHHHH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV-NLGLRTALIVTP-VNVLHNWK 800 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~-~~~~k~~LIV~P-~sLl~QW~ 800 (1360)
.+++||.+++..+. .+.+.+++.++|.|||+..+..+...+... .....++|||+| ..++.||.
T Consensus 21 ~~~~~Q~~~~~~~~--------------~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~ 86 (203)
T cd00268 21 KPTPIQARAIPPLL--------------SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIA 86 (203)
T ss_pred CCCHHHHHHHHHHh--------------cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHH
Confidence 57999999998774 367899999999999988555444433332 122357999999 45889999
Q ss_pred HHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEe
Q 000672 801 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 880 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlD 880 (1360)
..+..+... ..+.+..+.+....... ...+....+|+|+|...+........ .....++++|+|
T Consensus 87 ~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~l~~~~------------~~~~~l~~lIvD 150 (203)
T cd00268 87 EVARKLGKH--TNLKVVVIYGGTSIDKQ--IRKLKRGPHIVVATPGRLLDLLERGK------------LDLSKVKYLVLD 150 (203)
T ss_pred HHHHHHhcc--CCceEEEEECCCCHHHH--HHHhcCCCCEEEEChHHHHHHHHcCC------------CChhhCCEEEEe
Confidence 999988753 23566666554332211 22333467899999877654221110 111267899999
Q ss_pred CCcccCCcc-h-HHHHHHhhc-ccceEEEEeCCCC
Q 000672 881 EAHMIKNTR-A-DTTQALKQV-KCQRRIALTGSPL 912 (1360)
Q Consensus 881 EAH~IKN~~-S-k~skal~~L-ka~~RllLTGTPi 912 (1360)
|+|.+.+.. . .....+..+ .....+++||||-
T Consensus 151 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 151 EADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 999986443 2 222233444 3577899999996
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.09 E-value=6.2e-08 Score=123.72 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=107.3
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
..+++..|++.|..+...|.++|||+.....++.|..+|.. .|+++..++|.++..+|..++..|..
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~------------~gi~~~~~h~~~~~~~R~~~l~~f~~- 494 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKE------------LGIKVRYLHSDIDTLERVEIIRDLRL- 494 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhh------------cceeEEEEECCCCHHHHHHHHHHHHc-
Confidence 35678889999998888899999999999999999999986 68899999999999999999999986
Q ss_pred CCCCceEEEeecccccccCCccCCCEEEEEcC-----CCChhHHHHHhHhHhhcCCCCcEEEEEEecCC
Q 000672 1196 LNKRVKCTLISTRAGSLGINLHSANRVIIVDG-----SWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHG 1259 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~-----~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~g 1259 (1360)
+.+. +|++|...+.|++++.++.||++|. +-++..+.|++||++|- . .-.++.|+...
T Consensus 495 --g~i~-vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~~ 557 (652)
T PRK05298 495 --GEFD-VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADKI 557 (652)
T ss_pred --CCce-EEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecCC
Confidence 4454 5789999999999999999999996 46889999999999994 2 33455566543
No 120
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.08 E-value=1.4e-09 Score=114.58 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHHHHHHH
Q 000672 726 AHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQEFM 804 (1360)
Q Consensus 726 phQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW~~Ei~ 804 (1360)
|+|.+++.-+. .+...++..++|.|||..++..+...+... ....+||++| ..++.|-..++.
T Consensus 2 ~~Q~~~~~~i~--------------~~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~ 65 (169)
T PF00270_consen 2 PLQQEAIEAII--------------SGKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLR 65 (169)
T ss_dssp HHHHHHHHHHH--------------TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------------cCCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeeccccccccccccc
Confidence 78999988764 246799999999999998886666554443 2248999999 558899999999
Q ss_pred HhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCcc
Q 000672 805 KWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHM 884 (1360)
Q Consensus 805 k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~ 884 (1360)
+++.. ..+++..+.+...... ..........+|+|+|+..|........ ..+ ...++||+||+|.
T Consensus 66 ~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~ilv~T~~~l~~~~~~~~-----------~~~-~~~~~iViDE~h~ 130 (169)
T PF00270_consen 66 KFFSN--TNVRVVLLHGGQSISE-DQREVLSNQADILVTTPEQLLDLISNGK-----------INI-SRLSLIVIDEAHH 130 (169)
T ss_dssp HHTTT--TTSSEEEESTTSCHHH-HHHHHHHTTSSEEEEEHHHHHHHHHTTS-----------STG-TTESEEEEETHHH
T ss_pred ccccc--cccccccccccccccc-cccccccccccccccCcchhhccccccc-----------ccc-ccceeeccCcccc
Confidence 98865 2355555555433221 1111123468999999998765322100 011 2479999999999
Q ss_pred cCCc--chHHHHHHhhc---ccceEEEEeCCCCCCchhh
Q 000672 885 IKNT--RADTTQALKQV---KCQRRIALTGSPLQNNLME 918 (1360)
Q Consensus 885 IKN~--~Sk~skal~~L---ka~~RllLTGTPiqNnl~E 918 (1360)
+-.. .......+..+ ...+.+++||||- .++..
T Consensus 131 l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 131 LSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp HHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred cccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 9652 22233334444 3467999999997 55443
No 121
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.08 E-value=5.4e-09 Score=138.10 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=86.3
Q ss_pred CCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccc
Q 000672 1133 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1212 (1360)
Q Consensus 1133 ~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGge 1212 (1360)
...++|||......++.+...|.... .....++.++|+++.++|..+++.+ +..+ +|++|.+++.
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~---------~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rk-IIVATNIAEt 349 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLN---------LRHTEILPLYARLSNSEQNRVFQSH-----SGRR-IVLATNVAET 349 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcC---------CCcceEeecccCCCHHHHHHHhccc-----CCee-EEEeccHHhh
Confidence 34689999999999999999998631 1234467899999999999876642 2333 7899999999
Q ss_pred cCCccCCCEEEEEc---------------CCCCh---hHHHHHhHhHhhcCCCCcEEEEEEecCCCH
Q 000672 1213 GINLHSANRVIIVD---------------GSWNP---TYDLQAIYRAWRYGQTKPVFAYRLMAHGTM 1261 (1360)
Q Consensus 1213 GLNL~~An~VIi~D---------------~~WNP---s~~~QAiGRa~RiGQkK~V~VyrLva~gTI 1261 (1360)
||++.+.++||.++ .+-.| +...||.||++|. .+-..|+|+++...
T Consensus 350 SITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 350 SLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred ccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 99999999999974 22223 6788999999997 36778899986543
No 122
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.03 E-value=2.7e-08 Score=128.69 Aligned_cols=131 Identities=17% Similarity=0.172 Sum_probs=100.2
Q ss_pred hhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC--CCCCceEEEee
Q 000672 1129 MCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP--LNKRVKCTLIS 1206 (1360)
Q Consensus 1129 ~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~--~n~~v~VlLIS 1206 (1360)
.....|.||+|-++.+..+..+...|+. .+.+++.+++.++...|.+.++...+- .+. ..++|+
T Consensus 435 ~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~------------~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~--~~IvVa 500 (733)
T COG1203 435 EEVKEGKKVLVIVNTVDRAIELYEKLKE------------KGPKVLLLHSRFTLKDREEKERELKKLFKQNE--GFIVVA 500 (733)
T ss_pred hhhccCCcEEEEEecHHHHHHHHHHHHh------------cCCCEEEEecccchhhHHHHHHHHHHHHhccC--CeEEEE
Confidence 3345689999999999999999999986 233799999999999999988865431 112 237999
Q ss_pred cccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcC--CCCcEEEEEEecCCCHHHHHHHHHHHHHHHH
Q 000672 1207 TRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYG--QTKPVFAYRLMAHGTMEEKIYKRQVTKEGLA 1276 (1360)
Q Consensus 1207 TkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiG--QkK~V~VyrLva~gTIEEkI~~rq~~K~~La 1276 (1360)
|++...|+|+. .+. ++-|+. -....+||.||++|-| ....++||...-.+....+.+.....+....
T Consensus 501 TQVIEagvDid-fd~-mITe~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 569 (733)
T COG1203 501 TQVIEAGVDID-FDV-LITELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSL 569 (733)
T ss_pred eeEEEEEeccc-cCe-eeecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhccc
Confidence 99999999998 444 444443 3567899999999999 5677888888888877777777666654433
No 123
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.01 E-value=9.8e-09 Score=132.81 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=97.5
Q ss_pred CCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccc
Q 000672 1133 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1212 (1360)
Q Consensus 1133 ~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGge 1212 (1360)
.+.-.||||.+..+.+.+...|.. .|+....++++++..+|+.+...|.. ..++ +++.|-|.|-
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~------------~~~~a~~YHAGl~~~~R~~Vq~~w~~---~~~~-VivATVAFGM 547 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRS------------LGKSAAFYHAGLPPKERETVQKAWMS---DKIR-VIVATVAFGM 547 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHH------------hchhhHhhhcCCCHHHHHHHHHHHhc---CCCe-EEEEEeeccC
Confidence 357789999999999999999997 57888999999999999999999997 3465 5778889999
Q ss_pred cCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEec
Q 000672 1213 GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMA 1257 (1360)
Q Consensus 1213 GLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva 1257 (1360)
|||-....-||+|..|-+---+-|-.||++|-|+...+..|+=..
T Consensus 548 GIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 548 GIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred CCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 999999999999999999999999999999999998877765433
No 124
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.3e-08 Score=116.94 Aligned_cols=120 Identities=22% Similarity=0.281 Sum_probs=103.0
Q ss_pred hHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCC
Q 000672 1119 KMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNK 1198 (1360)
Q Consensus 1119 Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~ 1198 (1360)
|+..|.++.. .-...+||++...-++.|...|.. .|.....++|.+...+|..+++.|+.+
T Consensus 252 k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~------------~~~~~s~~~~d~~q~~R~~~~~ef~~g--- 312 (397)
T KOG0327|consen 252 KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRA------------HGFTVSAIHGDMEQNERDTLMREFRSG--- 312 (397)
T ss_pred cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhh------------CCceEEEeecccchhhhhHHHHHhhcC---
Confidence 7777777776 235789999999999999999965 689999999999999999999999974
Q ss_pred CceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCC
Q 000672 1199 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 1260 (1360)
Q Consensus 1199 ~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gT 1260 (1360)
..+ +||+|...+.|++++..+-||+||.|-|+.++..++||++|+|-+ -.+..+++..+
T Consensus 313 ssr-vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~d 371 (397)
T KOG0327|consen 313 SSR-VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEED 371 (397)
T ss_pred Cce-EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCC--ceeeeeehHhh
Confidence 444 589999999999999999999999999999999999999999964 34445665543
No 125
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.93 E-value=1.3e-08 Score=115.64 Aligned_cols=256 Identities=18% Similarity=0.247 Sum_probs=152.0
Q ss_pred ccCcch--hhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec
Q 000672 715 RIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 792 (1360)
Q Consensus 715 ~vP~~l--~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P 792 (1360)
.+|..+ ...|=.-|+++|.+...++.+ ......+.|.+|+|.+|.||..|+.++|...+..++. +++-|-+.
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~----~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~--r~vwvS~s 100 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQ----ILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK--RAVWVSVS 100 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHh----hcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC--ceEEEECC
Confidence 455543 467889999999998766543 2344568899999999999999999999887766542 34444455
Q ss_pred hhhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcC
Q 000672 793 VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD 872 (1360)
Q Consensus 793 ~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~ 872 (1360)
..|..--.+.+...... .+.+..+........ ..-..+|+++||.+++...... .........+..++..
T Consensus 101 ~dL~~Da~RDl~DIG~~---~i~v~~l~~~~~~~~------~~~~~GvlF~TYs~L~~~~~~~-~~~~sRl~ql~~W~g~ 170 (303)
T PF13872_consen 101 NDLKYDAERDLRDIGAD---NIPVHPLNKFKYGDI------IRLKEGVLFSTYSTLISESQSG-GKYRSRLDQLVDWCGE 170 (303)
T ss_pred hhhhhHHHHHHHHhCCC---cccceechhhccCcC------CCCCCCccchhHHHHHhHHhcc-CCccchHHHHHHHHhc
Confidence 66777766666544322 233333322111110 1135689999999988653221 1122233444455544
Q ss_pred CC-CEEEEeCCcccCCcch------HHHHHHhhc----ccceEEEEeCCCCCCchhhHHhhhhhhccCCCC------ChH
Q 000672 873 GP-DILVCDEAHMIKNTRA------DTTQALKQV----KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLG------SSH 935 (1360)
Q Consensus 873 ~f-dlVIlDEAH~IKN~~S------k~skal~~L----ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lg------s~~ 935 (1360)
.| .+||+||||+.||..+ ++..++..| ..-+.+-.|||... |.-+|..+.+-++|| +..
T Consensus 171 dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas----ep~NmaYm~RLGLWG~gtpf~~~~ 246 (303)
T PF13872_consen 171 DFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS----EPRNMAYMSRLGLWGPGTPFPDFD 246 (303)
T ss_pred CCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC----CCceeeeeeeccccCCCCCCCCHH
Confidence 44 4788999999998754 566666555 44578999999974 223333333444443 445
Q ss_pred HHHhhccCCcccCCCCCCChHHHHHHHHHHHHHHHHH--hHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHH
Q 000672 936 EFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQL--KGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRF 1011 (1360)
Q Consensus 936 eF~~~f~~pi~~g~~~~st~~~~~~~~~r~~~L~~~L--~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~l 1011 (1360)
+|.+.+. .+... ....+-..+ .+..++|.. .+-.....++.++|++.|.++|+.+
T Consensus 247 ~f~~a~~----~gGv~------------amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~~ 303 (303)
T PF13872_consen 247 DFLEAME----KGGVG------------AMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDAY 303 (303)
T ss_pred HHHHHHH----hcCch------------HHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcCC
Confidence 5544432 22110 011111111 122333332 3445567788999999999999753
No 126
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=4.8e-07 Score=115.59 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=93.6
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHH-HHHHHHhCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQ-KLVERFNEP 1195 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~-~iI~~Fn~~ 1195 (1360)
..|..++++-+......|..|||-+.++..-+.|..+|.. .|+++..++.... +++ .+|..=-.
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~------------~gi~h~vLNak~~--~~Ea~iia~AG~- 615 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQ------------NRIEHTVLNAKNH--AQEAEIIAGAGK- 615 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH------------cCCcceecccchh--hhHHHHHHhcCC-
Confidence 4789999999988888999999999999999999999986 6888888887644 333 44443222
Q ss_pred CCCCceEEEeecccccccCCcc--------CCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEE
Q 000672 1196 LNKRVKCTLISTRAGSLGINLH--------SANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 1252 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~--------~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~V 1252 (1360)
.+ -+.|+|..+|.|.++. +.=+||.-..+=|...+.|..||++|.|..-....
T Consensus 616 -~g---~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f 676 (970)
T PRK12899 616 -LG---AVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKF 676 (970)
T ss_pred -CC---cEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeE
Confidence 22 2689999999998865 24488989999999999999999999998854433
No 127
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.90 E-value=1.9e-08 Score=115.96 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=104.6
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..|..+|+.++..... .+..+||+.....+.++...|.. .|+....+.|++.+..|..-+..|+...
T Consensus 245 a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~------------~g~~~s~iysslD~~aRk~~~~~F~~~k 311 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRD------------FGGEGSDIYSSLDQEARKINGRDFRGRK 311 (529)
T ss_pred HHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHh------------cCCCccccccccChHhhhhccccccCCc
Confidence 4688888888876654 56899999999999999999986 6888889999999999999999999743
Q ss_pred CCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecC
Q 000672 1197 NKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~ 1258 (1360)
. -+|++|+++..|++.+..+.||+||.|-.+..+..|+||+.|-|.+ -..|-||+.
T Consensus 312 ~----~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~ 367 (529)
T KOG0337|consen 312 T----SILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVAS 367 (529)
T ss_pred c----ceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEec
Confidence 2 2799999999999999999999999999999999999999998854 234444443
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.85 E-value=1.1e-06 Score=109.78 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=94.8
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..|+.++++-+..+...|..|||.+.++..-+.|...|.+ .|+++..+....... -..+|.+=-.
T Consensus 410 ~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~------------~gI~h~vLNAk~~~~-EA~IIa~AG~-- 474 (764)
T PRK12326 410 AEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRA------------AGVPAVVLNAKNDAE-EARIIAEAGK-- 474 (764)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh------------CCCcceeeccCchHh-HHHHHHhcCC--
Confidence 4699999999998889999999999999999999999986 689999998875432 2344544322
Q ss_pred CCCceEEEeecccccccCCcc---------------CCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEE
Q 000672 1197 NKRVKCTLISTRAGSLGINLH---------------SANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 1252 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~---------------~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~V 1252 (1360)
.+ -+-|+|..+|.|.++. +-=+||....+=|-..+.|..||++|.|..-....
T Consensus 475 ~g---aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f 542 (764)
T PRK12326 475 YG---AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVF 542 (764)
T ss_pred CC---cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeE
Confidence 12 3688999999998865 33488989999999999999999999998754433
No 129
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.82 E-value=6.9e-08 Score=111.52 Aligned_cols=219 Identities=20% Similarity=0.167 Sum_probs=123.5
Q ss_pred eEEEEEecCCHHHHHHHHHHHHhhcccc-----cccchH--------HHHhhHHHHHHHHHHHhcCcchhhhccccCCCC
Q 000672 992 TVFVITVKLSPLQRRLYKRFLDLHGFTN-----DRVSNE--------KIRKSFFAGYQALAQIWNHPGILQLTKDKGYPS 1058 (1360)
Q Consensus 992 ~e~vV~v~LS~~Q~~lYe~ll~~~~~~~-----~~~~~~--------~~~~s~~~~l~~LRqic~hP~Ll~~~~~~~~~~ 1058 (1360)
.++.+.++|+..|+++|+.++..+.... ...... .....+...+..|+.+|+||+|+...-....
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~-- 81 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQ-- 81 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S---
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccc--
Confidence 4688999999999999998876432111 000111 1124566778899999999998642211000
Q ss_pred CccccCCCCcccccccccccCCCccchhhhcCCCCCccchhhhhhhhhhhccccccccChhHHHHHHHHHhh-----hcC
Q 000672 1059 REDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMC-----SNM 1133 (1360)
Q Consensus 1059 ~e~~~d~~~de~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~-----~~~ 1133 (1360)
+ ++.+........|+|+..|-++|..+ ...
T Consensus 82 ------------------------------------------l---l~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~ 116 (297)
T PF11496_consen 82 ------------------------------------------L---LLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREY 116 (297)
T ss_dssp ------------------------------------------S----STTHHHHHHHT-HHHHHHHHHHHHH-----TTS
T ss_pred ------------------------------------------c---ccchHHHHHHHcCchHHHHHHHHHHHHhhhcccC
Confidence 0 00001111235699999999999998 555
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHH------------HHHhCCCCCCce
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLV------------ERFNEPLNKRVK 1201 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI------------~~Fn~~~n~~v~ 1201 (1360)
+-++||.++...++++||.+|.- +++.|-+++|..-..+....- ..........+.
T Consensus 117 ~~~ilIv~~~~k~ldllE~~llG------------k~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (297)
T PF11496_consen 117 PLHILIVSRSGKELDLLEGLLLG------------KKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVW 184 (297)
T ss_dssp SEEEEEEE-STHHHHHHHHHHTT------------SSSEEEESSS--S--S---S----------------------SEE
T ss_pred CceEEEEecCccHHHHHHHHHcc------------CCeeEEecCCCCCcCccccCCcccccccccccccccccccccceE
Confidence 67999999999999999999973 789999999976544333222 222223345677
Q ss_pred EEEeecccccc----cCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHH
Q 000672 1202 CTLISTRAGSL----GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQV 1270 (1360)
Q Consensus 1202 VlLISTkAGge----GLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~ 1270 (1360)
|+|+++.-... .++-...+.||-||+.+++....-..-|...-.+ +.+-|+||+..+|+|--++....
T Consensus 185 i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 185 IHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp EEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHHHHHTT
T ss_pred EEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccC
Confidence 88888875544 2334467899999999999876544444433222 89999999999999987776544
No 130
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.81 E-value=1.8e-06 Score=102.84 Aligned_cols=138 Identities=19% Similarity=0.202 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCC
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n 1197 (1360)
+-+.-|+.-++...+.++++||-+-...|+.-|.++|.. .|+++.+++.....-+|..+++..+.
T Consensus 430 ~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e------------~gikv~YlHSdidTlER~eIirdLR~--- 494 (663)
T COG0556 430 GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKE------------LGIKVRYLHSDIDTLERVEIIRDLRL--- 494 (663)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHh------------cCceEEeeeccchHHHHHHHHHHHhc---
Confidence 345556666666677899999999999999999999997 69999999999999999999999997
Q ss_pred CCceEEEeecccccccCCccCCCEEEEEcCC-----CChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHH
Q 000672 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGS-----WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 1272 (1360)
Q Consensus 1198 ~~v~VlLISTkAGgeGLNL~~An~VIi~D~~-----WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K 1272 (1360)
+.+. +|+.....-+||+|+.++-|.|+|.+ -+-...+|-|||+-|--.- .|..|-=...++|...|-+...++
T Consensus 495 G~~D-vLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 495 GEFD-VLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERRR 572 (663)
T ss_pred CCcc-EEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHHH
Confidence 4444 58889999999999999999999986 4778899999999994322 344444445567777776554443
No 131
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.76 E-value=4.1e-07 Score=110.92 Aligned_cols=270 Identities=20% Similarity=0.257 Sum_probs=154.8
Q ss_pred ccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEe-ch
Q 000672 715 RIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT-PV 793 (1360)
Q Consensus 715 ~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~-P~ 793 (1360)
.+|.--...|-.-|+++|-|.....- ++.......|.+|.|.-|.||-.++..+|...+.. +.++.|.+. ..
T Consensus 256 alP~i~sg~lSALQLEav~YAcQ~He----~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk---GRKrAlW~SVSs 328 (1300)
T KOG1513|consen 256 ALPSIDSGHLSALQLEAVTYACQAHE----VLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK---GRKRALWFSVSS 328 (1300)
T ss_pred ecccCcccchhHHHHHHHHHHHhhhh----hcCCCCccceeeeccCcccCCCceeEEEEehhhhc---ccceeEEEEecc
Confidence 35665567889999999998865432 22333456789999999999988877777665444 345666665 45
Q ss_pred hhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCC
Q 000672 794 NVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873 (1360)
Q Consensus 794 sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~ 873 (1360)
-|...-.+.+...... .+.|+.+...+-.+.... ..-..+.+|++.||+.+.--+.++..+-+...+.+..++...
T Consensus 329 DLKfDAERDL~DigA~---~I~V~alnK~KYakIss~-en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~ 404 (1300)
T KOG1513|consen 329 DLKFDAERDLRDIGAT---GIAVHALNKFKYAKISSK-ENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGED 404 (1300)
T ss_pred ccccchhhchhhcCCC---Cccceehhhccccccccc-ccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhc
Confidence 5666666666655322 245544332111100000 001235689999999987655544444444455555555556
Q ss_pred C-CEEEEeCCcccCC-------cchHHHHHHhh----cccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhh-
Q 000672 874 P-DILVCDEAHMIKN-------TRADTTQALKQ----VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNR- 940 (1360)
Q Consensus 874 f-dlVIlDEAH~IKN-------~~Sk~skal~~----Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~- 940 (1360)
| .+||+||||+.|| ..+++-+.+.. |...+++-.|||-. .|=.+|..+++.++||....|.+.
T Consensus 405 feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGA----sEPrNMaYM~RLGlWGegtaf~eF~ 480 (1300)
T KOG1513|consen 405 FEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGA----SEPRNMAYMVRLGLWGEGTAFPEFE 480 (1300)
T ss_pred cceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCC----CCcchhhhhhhhccccCCCcCccHH
Confidence 6 4788999999998 23555555543 46677888899853 344566667777777654333211
Q ss_pred -ccCCcccCCCCCCChHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHh
Q 000672 941 -FQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL 1014 (1360)
Q Consensus 941 -f~~pi~~g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~ 1014 (1360)
|.+.++..... +...-...|+ ++++.+-|- + .+......+-.|+|+++.+.+|+.....
T Consensus 481 eFi~AvEkRGvG-AMEIVAMDMK---------~rGmYiARQ---L--SFkgVsFrieEv~ls~eF~k~Yn~a~~L 540 (1300)
T KOG1513|consen 481 EFIHAVEKRGVG-AMEIVAMDMK---------LRGMYIARQ---L--SFKGVSFRIEEVPLSKEFRKVYNRAAEL 540 (1300)
T ss_pred HHHHHHHhcCCc-eeeeeehhhh---------hhhhhhhhh---c--cccCceEEEEecccCHHHHHHHHHHHHH
Confidence 11112211111 0000000111 222211111 1 2334455677899999999999876543
No 132
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.70 E-value=1.3e-06 Score=101.04 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=91.6
Q ss_pred EEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCc
Q 000672 1137 SLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINL 1216 (1360)
Q Consensus 1137 VLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL 1216 (1360)
-||||..+...+.+.-.|.. .|+...-++.+....+|..+.+.|-++ .+. +|+.|...|.|++=
T Consensus 258 GIVYCRTR~~cEq~AI~l~~------------~Gi~A~AYHAGLK~~ERTeVQe~WM~~---~~P-vI~AT~SFGMGVDK 321 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEI------------AGIPAMAYHAGLKKKERTEVQEKWMNN---EIP-VIAATVSFGMGVDK 321 (641)
T ss_pred eEEEeccHHHHHHHHHHhhh------------cCcchHHHhcccccchhHHHHHHHhcC---CCC-EEEEEeccccccCC
Confidence 48999999999999988875 799999999999999999999999873 343 57888999999999
Q ss_pred cCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEE
Q 000672 1217 HSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYR 1254 (1360)
Q Consensus 1217 ~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~Vyr 1254 (1360)
+...-||+.+++-|-+-+-|--||++|-|-..-+..|+
T Consensus 322 p~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 322 PDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred cceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 99999999999999999999999999999888787775
No 133
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.67 E-value=1.2e-06 Score=111.67 Aligned_cols=162 Identities=15% Similarity=0.213 Sum_probs=93.5
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcc-------cCCCceEEEec-hhhHHHHHHHHHHhCCCCCCCeEEEEecCc
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVN-------LGLRTALIVTP-VNVLHNWKQEFMKWRPSELKPLRVFMLEDV 822 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~-------~~~k~~LIV~P-~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~ 822 (1360)
...+.+|+.++|.|||-.|+.-+..-+..+. .+.-++.-|+| ++|+..|...|.+|+.. ..+.|....|.
T Consensus 324 ~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~--~GI~V~ElTgD 401 (1674)
T KOG0951|consen 324 GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAP--LGITVLELTGD 401 (1674)
T ss_pred CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccc--cCcEEEEeccc
Confidence 3467899999999999776654443332221 12235677888 78999999999998754 22555555554
Q ss_pred chhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCccc---CCcc--hHHHHHHh
Q 000672 823 SRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMI---KNTR--ADTTQALK 897 (1360)
Q Consensus 823 ~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~I---KN~~--Sk~skal~ 897 (1360)
..-...++ ..-.|+++|.+-+--+..... +..+. .-+.++|+||.|.+ |++. |-..+..+
T Consensus 402 ~~l~~~qi-----eeTqVIV~TPEK~DiITRk~g--draY~--------qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r 466 (1674)
T KOG0951|consen 402 SQLGKEQI-----EETQVIVTTPEKWDIITRKSG--DRAYE--------QLVRLLIIDEIHLLHDDRGPVLESIVARTFR 466 (1674)
T ss_pred ccchhhhh-----hcceeEEeccchhhhhhcccC--chhHH--------HHHHHHhhhhhhhcccccchHHHHHHHHHHH
Confidence 33222222 334678888776532221111 11111 12456899999999 4442 33444444
Q ss_pred hc----ccceEEEEeCCCCCCchhhHHhhhhhhccCCC
Q 000672 898 QV----KCQRRIALTGSPLQNNLMEYYCMVDFVREGFL 931 (1360)
Q Consensus 898 ~L----ka~~RllLTGTPiqNnl~EL~sLL~fL~p~~l 931 (1360)
+. ...+.++||||- -|..|.-+.+..-.+++|
T Consensus 467 ~ses~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf 502 (1674)
T KOG0951|consen 467 RSESTEEGSRLVGLSATL--PNYEDVASFLRVDPEGLF 502 (1674)
T ss_pred HhhhcccCceeeeecccC--CchhhhHHHhccCccccc
Confidence 44 356779999995 234555443332224443
No 134
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.64 E-value=4.7e-06 Score=106.69 Aligned_cols=120 Identities=19% Similarity=0.213 Sum_probs=94.3
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
...|+.++++-+..+...|..|||-+.++..-+.|..+|.. .|+++-.+..... ..-..+|.+ .+
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~------------~gi~h~VLNAk~~-~~EA~IIa~--AG 495 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKK------------EGIEHKVLNAKYH-EKEAEIIAQ--AG 495 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHH------------cCCcHHHhccccc-hhHHHHHHc--CC
Confidence 35799999999999999999999999999999999999996 6788877776644 222334442 22
Q ss_pred CCCCceEEEeecccccccCCcc-------------------------------------CCCEEEEEcCCCChhHHHHHh
Q 000672 1196 LNKRVKCTLISTRAGSLGINLH-------------------------------------SANRVIIVDGSWNPTYDLQAI 1238 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~-------------------------------------~An~VIi~D~~WNPs~~~QAi 1238 (1360)
..+ -+-|+|..+|.|.++. +-=+||.-..+=|-..+.|..
T Consensus 496 ~~G---aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLr 572 (913)
T PRK13103 496 RPG---ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLR 572 (913)
T ss_pred CCC---cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhc
Confidence 123 2588999999998874 344889999999999999999
Q ss_pred HhHhhcCCCCcEEEE
Q 000672 1239 YRAWRYGQTKPVFAY 1253 (1360)
Q Consensus 1239 GRa~RiGQkK~V~Vy 1253 (1360)
||++|.|..-....|
T Consensus 573 GRaGRQGDPGsS~f~ 587 (913)
T PRK13103 573 GRAGRQGDPGSSRFY 587 (913)
T ss_pred cccccCCCCCceEEE
Confidence 999999988544433
No 135
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.57 E-value=9.9e-06 Score=102.83 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=95.6
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
...|+.++++-+..+...|..|||.|.++..-..|..+|.. .|+++..++.... +++..|=. +.+
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~------------~gi~h~vLNAk~~--e~EA~IIa-~AG 472 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLE------------ANIPHTVLNAKQN--AREAEIIA-KAG 472 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------CCCCceeecccch--hhHHHHHH-hCC
Confidence 35799999999998888999999999999999999999986 6888888888644 34433322 332
Q ss_pred CCCCceEEEeecccccccCCccCCC--------EEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEE
Q 000672 1196 LNKRVKCTLISTRAGSLGINLHSAN--------RVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY 1253 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~~An--------~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~Vy 1253 (1360)
..+ -+.|+|..+|.|.++.-.. +||..+.+=|-..+.|..||++|.|..-....|
T Consensus 473 ~~G---aVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 473 QKG---AITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred CCC---eEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 222 3688999999998877433 999999999999999999999999987544433
No 136
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.55 E-value=1.1e-05 Score=106.70 Aligned_cols=93 Identities=20% Similarity=0.260 Sum_probs=61.9
Q ss_pred HHHHHHHhhh-cCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCc
Q 000672 1122 LLLDILTMCS-NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRV 1200 (1360)
Q Consensus 1122 ~L~eiL~~~~-~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v 1200 (1360)
.+.+.|..+. ..+.++|||..+..+++.+...|..... ..++..+. .| .. ..|.+++++|+...+
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~--------~~~~~~l~-q~-~~-~~r~~ll~~F~~~~~--- 726 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE--------FEGYEVLA-QG-IN-GSRAKIKKRFNNGEK--- 726 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc--------ccCceEEe-cC-CC-ccHHHHHHHHHhCCC---
Confidence 3444444332 3456899999999999999999874210 12333222 22 22 478999999997422
Q ss_pred eEEEeecccccccCCccCC--CEEEEEcCCC
Q 000672 1201 KCTLISTRAGSLGINLHSA--NRVIIVDGSW 1229 (1360)
Q Consensus 1201 ~VlLISTkAGgeGLNL~~A--n~VIi~D~~W 1229 (1360)
-+|++|.+..+|||+++- ..||+.-.|+
T Consensus 727 -~iLlgt~sf~EGVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 727 -AILLGTSSFWEGVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred -eEEEEcceeecccccCCCceEEEEEeCCCC
Confidence 257788999999999964 4667777665
No 137
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.48 E-value=1.2e-06 Score=115.79 Aligned_cols=173 Identities=21% Similarity=0.205 Sum_probs=104.9
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHHHH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQ 801 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW~~ 801 (1360)
..|++|+.+..+.....+..+.....+..+.||++.|..|+|||++++-+...+... ....+++||+= .-|-.|-.+
T Consensus 244 ~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~ 321 (962)
T COG0610 244 VKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSD 321 (962)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHH
Confidence 345555555544444333333333333567899999999999999998877766655 33446777775 457889999
Q ss_pred HHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeC
Q 000672 802 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 881 (1360)
Q Consensus 802 Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDE 881 (1360)
+|..+..... ... ...+...-...+.. ..++|+|||-+-|....... .........-+||+||
T Consensus 322 ~f~~~~~~~~----~~~-~~~s~~~Lk~~l~~--~~~~ii~TTIQKf~~~~~~~----------~~~~~~~~~ivvI~DE 384 (962)
T COG0610 322 EFQSFGKVAF----NDP-KAESTSELKELLED--GKGKIIVTTIQKFNKAVKED----------ELELLKRKNVVVIIDE 384 (962)
T ss_pred HHHHHHHhhh----hcc-cccCHHHHHHHHhc--CCCcEEEEEecccchhhhcc----------cccccCCCcEEEEEec
Confidence 9998865421 111 22222222222221 25689999999887543221 1112334566799999
Q ss_pred CcccCCcchHHHHHHhh-cccceEEEEeCCCCCCch
Q 000672 882 AHMIKNTRADTTQALKQ-VKCQRRIALTGSPLQNNL 916 (1360)
Q Consensus 882 AH~IKN~~Sk~skal~~-Lka~~RllLTGTPiqNnl 916 (1360)
||+--. ....+.++. ++.-.-++.||||+...-
T Consensus 385 aHRSQ~--G~~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 385 AHRSQY--GELAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred hhhccc--cHHHHHHHHHhccceEEEeeCCcccccc
Confidence 997533 333444433 355778999999987543
No 138
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.47 E-value=2e-06 Score=111.09 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=54.6
Q ss_pred eecccccccCCccC----------------------C----------CEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEE
Q 000672 1205 ISTRAGSLGINLHS----------------------A----------NRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFA 1252 (1360)
Q Consensus 1205 ISTkAGgeGLNL~~----------------------A----------n~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~V 1252 (1360)
++|..+.+|++... + +.||+|||.-...+.+|. .|++|-| +++.|
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEv-yra~r~~--r~~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEV-YKASRPL--RPLRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHH-HHccCCC--CCcEE
Confidence 45667778888887 4 999999997666666662 2333433 35899
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHHH-Hhccc
Q 000672 1253 YRLMAHGTMEEKIYKRQVTKEGLAAR-VVDRQ 1283 (1360)
Q Consensus 1253 yrLva~gTIEEkI~~rq~~K~~La~~-Vvd~~ 1283 (1360)
|-|++.||+||.-|-....|.+-+-. ++...
T Consensus 508 yfL~y~~S~EEq~yl~sirrEK~AFe~LIrek 539 (814)
T TIGR00596 508 YFLYYGGSIEEQRYLTSLRREKDAFTKLIREK 539 (814)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887777665543 44443
No 139
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.44 E-value=9.5e-05 Score=84.42 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=96.0
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
|..-||||-+..-...+...|+. .||....++..+.+..|.-+-..|-. +.++| ++.|-|.|.|
T Consensus 317 gqsgiiyc~sq~d~ekva~alkn------------~gi~a~~yha~lep~dks~~hq~w~a---~eiqv-ivatvafgmg 380 (695)
T KOG0353|consen 317 GQSGIIYCFSQKDCEKVAKALKN------------HGIHAGAYHANLEPEDKSGAHQGWIA---GEIQV-IVATVAFGMG 380 (695)
T ss_pred CCcceEEEeccccHHHHHHHHHh------------cCccccccccccCccccccccccccc---cceEE-EEEEeeeccc
Confidence 56778999888888899999986 58888888888888888777777765 56764 6778899999
Q ss_pred CCccCCCEEEEEcCCCChhHHHH-------------------------------------------HhHhHhhcCCCCcE
Q 000672 1214 INLHSANRVIIVDGSWNPTYDLQ-------------------------------------------AIYRAWRYGQTKPV 1250 (1360)
Q Consensus 1214 LNL~~An~VIi~D~~WNPs~~~Q-------------------------------------------AiGRa~RiGQkK~V 1250 (1360)
|+-+....||+-..|-+-..+-| --||++|-|++-.+
T Consensus 381 idkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~c 460 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADC 460 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccE
Confidence 99999999999999999999999 45888999999888
Q ss_pred EEEEEec-----------CCCHHHHHHHHHH
Q 000672 1251 FAYRLMA-----------HGTMEEKIYKRQV 1270 (1360)
Q Consensus 1251 ~VyrLva-----------~gTIEEkI~~rq~ 1270 (1360)
..|+=++ ++|=-.++|+...
T Consensus 461 ilyy~~~difk~ssmv~~e~~g~q~ly~mv~ 491 (695)
T KOG0353|consen 461 ILYYGFADIFKISSMVQMENTGIQKLYEMVR 491 (695)
T ss_pred EEEechHHHHhHHHHHHHHhhhHHHHHHHHH
Confidence 7766432 3444456665544
No 140
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.32 E-value=2.9e-05 Score=100.90 Aligned_cols=151 Identities=13% Similarity=0.143 Sum_probs=101.2
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHH
Q 000672 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHN 798 (1360)
Q Consensus 720 l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~Q 798 (1360)
....|-|+|++++.-+ ..+.+.+++..+|.|||+.+-..++..+..+. +++-..| +.|.+|
T Consensus 116 ~~F~LD~fQ~~a~~~L--------------er~esVlV~ApTssGKTvVaeyAi~~al~~~q----rviYTsPIKALsNQ 177 (1041)
T COG4581 116 YPFELDPFQQEAIAIL--------------ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ----RVIYTSPIKALSNQ 177 (1041)
T ss_pred CCCCcCHHHHHHHHHH--------------hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC----ceEeccchhhhhhh
Confidence 5678999999999766 46789999999999999999888877766543 5888899 667777
Q ss_pred HHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEE
Q 000672 799 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1360)
Q Consensus 799 W~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVI 878 (1360)
=..+|..-+.... -.|..+.|... ......++++|.+.+|++.+... ........||
T Consensus 178 Kyrdl~~~fgdv~--~~vGL~TGDv~---------IN~~A~clvMTTEILRnMlyrg~------------~~~~~i~~Vi 234 (1041)
T COG4581 178 KYRDLLAKFGDVA--DMVGLMTGDVS---------INPDAPCLVMTTEILRNMLYRGS------------ESLRDIEWVV 234 (1041)
T ss_pred HHHHHHHHhhhhh--hhccceeccee---------eCCCCceEEeeHHHHHHHhccCc------------ccccccceEE
Confidence 6667654433200 01111222111 12456788888899998654331 1112566799
Q ss_pred EeCCcccCCcc-hHHHHHHhhc--ccceEEEEeCCC
Q 000672 879 CDEAHMIKNTR-ADTTQALKQV--KCQRRIALTGSP 911 (1360)
Q Consensus 879 lDEAH~IKN~~-Sk~skal~~L--ka~~RllLTGTP 911 (1360)
+||.|.|.-.. .-.+..+.-+ +.-+.++||||-
T Consensus 235 FDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 235 FDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV 270 (1041)
T ss_pred EEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC
Confidence 99999997543 4445544333 444889999994
No 141
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.30 E-value=0.00045 Score=88.27 Aligned_cols=115 Identities=12% Similarity=0.170 Sum_probs=73.9
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHHHHHHHhCCCCC-CCeEEEEecCc-chhHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQEFMKWRPSEL-KPLRVFMLEDV-SRDRRA 828 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~~Ei~k~~p~~~-~~l~V~~~~g~-~~~~r~ 828 (1360)
|...-+-.++|+|||.-.+.....+... .++++||+|+. |+.|-.+-+.++....- ....+. ||+. +...+.
T Consensus 97 g~SFaiiAPTGvGKTTfg~~~sl~~a~k----gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~eke 171 (1187)
T COG1110 97 GKSFAIIAPTGVGKTTFGLLMSLYLAKK----GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKE 171 (1187)
T ss_pred CCceEEEcCCCCchhHHHHHHHHHHHhc----CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHH
Confidence 4555566699999995444333333222 26899999966 78899999999985533 223343 6765 333444
Q ss_pred HHHHHHh-hcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCccc
Q 000672 829 ELLAKWR-AKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMI 885 (1360)
Q Consensus 829 ~~l~~~~-~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~I 885 (1360)
..+.... ..++|+|+|...+. ..+..+.+.+||+|++|-...+
T Consensus 172 e~le~i~~gdfdIlitTs~FL~--------------k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 172 EALERIESGDFDILITTSQFLS--------------KRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHHHhcCCccEEEEeHHHHH--------------hhHHHhcccCCCEEEEccHHHH
Confidence 5555543 46789888876543 2334445568999999998765
No 142
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.26 E-value=0.00023 Score=92.52 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=53.0
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHHH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 801 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~~ 801 (1360)
..||.|++....+++.+ ..+..++|-.++|+|||+.+++.......... ...+++..+.++ -+.|-.+
T Consensus 10 ~~y~~Q~~~m~~v~~~l----------~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSL----------DRGDEAILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred CCCHHHHHHHHHHHHHh----------ccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHH
Confidence 46899999998887765 35778999999999999988877666544322 123555555544 5788999
Q ss_pred HHHH
Q 000672 802 EFMK 805 (1360)
Q Consensus 802 Ei~k 805 (1360)
|+++
T Consensus 79 Elk~ 82 (705)
T TIGR00604 79 ELRK 82 (705)
T ss_pred HHHh
Confidence 9987
No 143
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.20 E-value=1.7e-05 Score=102.69 Aligned_cols=185 Identities=17% Similarity=0.266 Sum_probs=111.5
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhH-HHHHHH---------HHHhCCCCCCCeEEEEecC
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL-HNWKQE---------FMKWRPSELKPLRVFMLED 821 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl-~QW~~E---------i~k~~p~~~~~l~V~~~~g 821 (1360)
..+..+..++|+|||.+++..|..+.... +...+|||||..-+ .-..+- |...++. .++.++++.+
T Consensus 59 ~~n~~~~M~TGtGKT~~~~~~i~~l~~~~--~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~--~~~~~~~~~S 134 (986)
T PRK15483 59 KANIDIKMETGTGKTYVYTRLMYELHQKY--GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYEN--TRIELYVINA 134 (986)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCC--ceeEEEEEec
Confidence 35788999999999999999998887654 35689999996533 323222 2222222 2467777765
Q ss_pred cch--hHH---HHHHHHHhh-------cCCEEEEcccccccccccccccchhh---HHHHHhhhcCCCCEEEEeCCcccC
Q 000672 822 VSR--DRR---AELLAKWRA-------KGGVFLIGYTAFRNLSFGKHVKDRNM---AREICHALQDGPDILVCDEAHMIK 886 (1360)
Q Consensus 822 ~~~--~~r---~~~l~~~~~-------~~~VvItSY~~~r~l~~~~~~~~~~~---~~~i~~ll~~~fdlVIlDEAH~IK 886 (1360)
... ..| ...+..+.. .-.|+|++.++|..-.......+..+ .......+...--+||+||+|++.
T Consensus 135 ~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~ 214 (986)
T PRK15483 135 GDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFP 214 (986)
T ss_pred CcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCC
Confidence 431 111 122222322 23688999998865321111101000 001122334455689999999996
Q ss_pred CcchHHHHHHhhcccceEEEEeCCCCC-------C--chhhHHhhhhhhccCCCCChHHHHhhccCCcc
Q 000672 887 NTRADTTQALKQVKCQRRIALTGSPLQ-------N--NLMEYYCMVDFVREGFLGSSHEFRNRFQNPIE 946 (1360)
Q Consensus 887 N~~Sk~skal~~Lka~~RllLTGTPiq-------N--nl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~ 946 (1360)
. ..+.++++..++....+.-|||--. | ...++|+|+.-| +....|.+...+-|.
T Consensus 215 ~-~~k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~L-----davdAyn~~LVK~I~ 277 (986)
T PRK15483 215 R-DNKFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFDL-----NAVDSFNDGLVKGVD 277 (986)
T ss_pred c-chHHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceeec-----CHHHHHHhCCcceEE
Confidence 5 2457788999999999999999743 1 122466666544 446777777766554
No 144
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.15 E-value=9e-05 Score=94.46 Aligned_cols=109 Identities=24% Similarity=0.277 Sum_probs=79.3
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHH--HHHHHHHHhCCCCCCceEEEeeccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSE--RQKLVERFNEPLNKRVKCTLISTRAGS 1211 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~e--R~~iI~~Fn~~~n~~v~VlLISTkAGg 1211 (1360)
|...|++.- .-...|++.|..++ .+.+++++|++++... -+.+++.|.++ +.. |||.|....
T Consensus 482 gs~~L~~~G--~GterieeeL~~~F----------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~g---e~d-ILiGTQmia 545 (730)
T COG1198 482 GSEHLRAVG--PGTERIEEELKRLF----------PGARIIRIDSDTTRRKGALEDLLDQFANG---EAD-ILIGTQMIA 545 (730)
T ss_pred CCCeeEEec--ccHHHHHHHHHHHC----------CCCcEEEEccccccchhhHHHHHHHHhCC---CCC-eeecchhhh
Confidence 455566554 34567777777653 5789999999987643 45789999974 333 799999999
Q ss_pred ccCCccCCCEEEEEcCCC---Ch---------hHHHHHhHhHhhcCCCCcEEEEEEecC
Q 000672 1212 LGINLHSANRVIIVDGSW---NP---------TYDLQAIYRAWRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1212 eGLNL~~An~VIi~D~~W---NP---------s~~~QAiGRa~RiGQkK~V~VyrLva~ 1258 (1360)
.|+|++....|.++|.+- +| ....|..||++|-+-.-.|.|=.+...
T Consensus 546 KG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 546 KGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred cCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 999999999998887652 22 356799999999866655655444443
No 145
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.13 E-value=6.9e-07 Score=108.21 Aligned_cols=49 Identities=22% Similarity=0.653 Sum_probs=44.0
Q ss_pred ccccccCCCCce---eecCCcccccchhhhcccCCcccccccccCCCceeecCCch
Q 000672 535 CYCVWCGRSSDL---VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 535 ~~C~~C~~gg~l---~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
+||.-|+..|.. +|||+||++||+.||.|++.+.. .+.|.|+|..|..+
T Consensus 254 ~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~en----iP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 254 DFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPEN----IPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHhCCccccccceeecCCchHHHHhhcCCCCCccc----CCCCccccCCCeee
Confidence 499999999988 99999999999999999988884 45789999999655
No 146
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.10 E-value=0.0002 Score=90.39 Aligned_cols=145 Identities=12% Similarity=0.213 Sum_probs=93.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~ 800 (1360)
..|-++|++||..| ..|...+.|.-+-.|||+.|=+.|+..... ..+++--.|-- |=+|=.
T Consensus 296 FelD~FQk~Ai~~l--------------erg~SVFVAAHTSAGKTvVAEYAialaq~h----~TR~iYTSPIKALSNQKf 357 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHL--------------ERGDSVFVAAHTSAGKTVVAEYAIALAQKH----MTRTIYTSPIKALSNQKF 357 (1248)
T ss_pred CCccHHHHHHHHHH--------------HcCCeEEEEecCCCCcchHHHHHHHHHHhh----ccceEecchhhhhccchH
Confidence 56789999999776 357889999999999999876555443222 34778888944 555556
Q ss_pred HHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEe
Q 000672 801 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 880 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlD 880 (1360)
++|..-+.+ ..+. .|.. ..++....+|+|.+.+|++.+... .+. .....||+|
T Consensus 358 RDFk~tF~D----vgLl--TGDv---------qinPeAsCLIMTTEILRsMLYrga----dli--------RDvE~VIFD 410 (1248)
T KOG0947|consen 358 RDFKETFGD----VGLL--TGDV---------QINPEASCLIMTTEILRSMLYRGA----DLI--------RDVEFVIFD 410 (1248)
T ss_pred HHHHHhccc----ccee--ecce---------eeCCCcceEeehHHHHHHHHhccc----chh--------hccceEEEe
Confidence 677655543 2222 2211 123567899999999998754321 111 145779999
Q ss_pred CCcccCCcc-hHHHHHHhhc--ccceEEEEeCCC
Q 000672 881 EAHMIKNTR-ADTTQALKQV--KCQRRIALTGSP 911 (1360)
Q Consensus 881 EAH~IKN~~-Sk~skal~~L--ka~~RllLTGTP 911 (1360)
|.|.+.+.. .-.+.-+.-+ +--..|+||||-
T Consensus 411 EVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 411 EVHYINDVERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred eeeecccccccccceeeeeeccccceEEEEeccC
Confidence 999996532 2333333322 333469999994
No 147
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.10 E-value=0.00047 Score=89.29 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=93.7
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
..|+.++++-+..+...|..|||-+.++..-..|.++|.. .|+++-+|.......+ ..+|.+=-.
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~------------~gI~H~VLNAK~h~~E-AeIVA~AG~-- 675 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKM------------RKIPHNVLNAKLHQKE-AEIVAEAGQ-- 675 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHH------------cCCcHHHhhccchhhH-HHHHHhcCC--
Confidence 4699999999999999999999999999999999999996 6888888877644222 234443222
Q ss_pred CCCceEEEeecccccccCCcc--------CCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEE
Q 000672 1197 NKRVKCTLISTRAGSLGINLH--------SANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVF 1251 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~--------~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~ 1251 (1360)
.+. +-|+|..+|.|.++. +.=+||.-..+=+...+.|..||++|.|..-...
T Consensus 676 ~Ga---VTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~ 735 (1112)
T PRK12901 676 PGT---VTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQ 735 (1112)
T ss_pred CCc---EEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcce
Confidence 232 588999999998866 4568899999999999999999999999874433
No 148
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.08 E-value=4.1e-05 Score=83.80 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=42.7
Q ss_pred EeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCC
Q 000672 1204 LISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTK 1248 (1360)
Q Consensus 1204 LISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK 1248 (1360)
|++|...|.|+++...|.||+||.|-.+..+..+++|++|+|.+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 778999999999999999999999999999999999999999763
No 149
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.08 E-value=0.00056 Score=87.83 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=64.7
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCH-HHHHHHHHHHhCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTES-SERQKLVERFNEP 1195 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~-~eR~~iI~~Fn~~ 1195 (1360)
..|..++++-+......|..|||-+.++..-+.|..+|.. .|+++..+...... ..-..+|.+=-.
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~------------~gi~h~vLNAk~~~~~~EA~IIA~AG~- 473 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKE------------YRLPHQLLNAKPENVRRESEIVAQAGR- 473 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHH------------cCCccceeeCCCccchhHHHHHHhcCC-
Confidence 4688889888888888999999999999999999999986 68999999887422 333445555222
Q ss_pred CCCCceEEEeecccccccCCcc
Q 000672 1196 LNKRVKCTLISTRAGSLGINLH 1217 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~ 1217 (1360)
.+ -+-|+|..+|.|.++.
T Consensus 474 -~G---~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 474 -KG---SITIATNMAGRGTDII 491 (870)
T ss_pred -CC---cEEEeccccCCCcCee
Confidence 22 2688999999996643
No 150
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.07 E-value=3.6e-05 Score=94.60 Aligned_cols=146 Identities=12% Similarity=0.211 Sum_probs=92.7
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHH
Q 000672 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNW 799 (1360)
Q Consensus 721 ~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW 799 (1360)
-.+|-|+|..+|.-+ ..+...+...-+..|||+.|=..|+..++..+ +++.-.| ++|-+|=
T Consensus 127 PF~LDpFQ~~aI~Ci--------------dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ----RVIYTSPIKALSNQK 188 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCI--------------DRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ----RVIYTSPIKALSNQK 188 (1041)
T ss_pred CcccCchHhhhhhhh--------------cCCceEEEEeecCCCcchHHHHHHHHHHHhcC----eEEeeChhhhhcchh
Confidence 467889999998754 45678888888999999988766666655533 7888888 5566666
Q ss_pred HHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEE
Q 000672 800 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 879 (1360)
Q Consensus 800 ~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIl 879 (1360)
.+|+..=+.+ +-.. .|.-. ..+....+|+|.+.+|+..+. .....+ ...+||+
T Consensus 189 YREl~~EF~D----VGLM--TGDVT---------InP~ASCLVMTTEILRsMLYR----GSEvmr--------EVaWVIF 241 (1041)
T KOG0948|consen 189 YRELLEEFKD----VGLM--TGDVT---------INPDASCLVMTTEILRSMLYR----GSEVMR--------EVAWVIF 241 (1041)
T ss_pred HHHHHHHhcc----ccee--eccee---------eCCCCceeeeHHHHHHHHHhc----cchHhh--------eeeeEEe
Confidence 6676543322 1111 11110 124557889999999876542 222333 3456999
Q ss_pred eCCcccCCcc-hHHHHH-Hhhc-ccceEEEEeCCC
Q 000672 880 DEAHMIKNTR-ADTTQA-LKQV-KCQRRIALTGSP 911 (1360)
Q Consensus 880 DEAH~IKN~~-Sk~ska-l~~L-ka~~RllLTGTP 911 (1360)
||.|.+|... .-.+.- +.-+ ..-+-++||||-
T Consensus 242 DEIHYMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 242 DEIHYMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred eeehhccccccceeeeeeEEeccccceEEEEeccC
Confidence 9999998643 112221 2222 456678999994
No 151
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.03 E-value=1.2e-05 Score=92.97 Aligned_cols=97 Identities=25% Similarity=0.264 Sum_probs=86.0
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
-+|.||||....-.|-|++++.... ..-+..+-++|...+.+|.+-+++|.. ..++ |||+|++++.|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkg---------g~~~scvclhgDrkP~Erk~nle~Fkk---~dvk-flictdvaarg 571 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKG---------GKHYSCVCLHGDRKPDERKANLESFKK---FDVK-FLICTDVAARG 571 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcC---------CccceeEEEecCCChhHHHHHHHhhhh---cCeE-EEEEehhhhcc
Confidence 4799999999999999999998631 134667889999999999999999997 4455 89999999999
Q ss_pred CCccCCCEEEEEcCCCChhHHHHHhHhHhh
Q 000672 1214 INLHSANRVIIVDGSWNPTYDLQAIYRAWR 1243 (1360)
Q Consensus 1214 LNL~~An~VIi~D~~WNPs~~~QAiGRa~R 1243 (1360)
|++++...+|++..|-....+..||||++|
T Consensus 572 ldi~g~p~~invtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 572 LDITGLPFMINVTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred ccccCCceEEEEecCcccchhhhhhhccch
Confidence 999999999999999999999999988876
No 152
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.01 E-value=0.00027 Score=89.25 Aligned_cols=157 Identities=14% Similarity=0.159 Sum_probs=100.4
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 828 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~ 828 (1360)
+.+...++..++-.|||...-.++-..++..+. +-++-|+| ++++.|=..++..-+......-.+..... -.+.
T Consensus 524 Dr~eSavIVAPTSaGKTfisfY~iEKVLResD~--~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~---ltqE 598 (1330)
T KOG0949|consen 524 DRNESAVIVAPTSAGKTFISFYAIEKVLRESDS--DVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGD---LTQE 598 (1330)
T ss_pred hcccceEEEeeccCCceeccHHHHHHHHhhcCC--CEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhh---hhHH
Confidence 456788999999999999998888888887764 47888889 66888877777533211000000111110 0111
Q ss_pred HHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCcccCCcc-hHHHHHHhhcccceEEEE
Q 000672 829 ELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTR-ADTTQALKQVKCQRRIAL 907 (1360)
Q Consensus 829 ~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~IKN~~-Sk~skal~~Lka~~RllL 907 (1360)
..+..| +..|.||..+.+..+..... ..........+||+||.|.|.|.. +..+..+-.+-.--.++|
T Consensus 599 Ysinp~--nCQVLITvPecleslLlspp---------~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L~L 667 (1330)
T KOG0949|consen 599 YSINPW--NCQVLITVPECLESLLLSPP---------HHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFLVL 667 (1330)
T ss_pred hcCCch--hceEEEEchHHHHHHhcCch---------hhhhhhhcceEEEechhhhccccccchHHHHHHHhcCCCeeEE
Confidence 111112 46799999988765432210 011112366899999999998864 666666666667778999
Q ss_pred eCCCCCCchhhHHhhhh
Q 000672 908 TGSPLQNNLMEYYCMVD 924 (1360)
Q Consensus 908 TGTPiqNnl~EL~sLL~ 924 (1360)
||| ++|+..++..++
T Consensus 668 SAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 668 SAT--IGNPNLFQKWLN 682 (1330)
T ss_pred ecc--cCCHHHHHHHHH
Confidence 999 577777766665
No 153
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.96 E-value=2.1e-05 Score=89.65 Aligned_cols=93 Identities=22% Similarity=0.246 Sum_probs=74.7
Q ss_pred HHHHHHhCCCCCCceEEEeecccccccCCccC-------CCEE-EEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecC
Q 000672 1187 KLVERFNEPLNKRVKCTLISTRAGSLGINLHS-------ANRV-IIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1187 ~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~-------An~V-Ii~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~ 1258 (1360)
...+.|++ ++..|+|+| .|||.||.||+ -.|| |.++++|+....+|.+||+||-||..+..+..+++.
T Consensus 52 ~e~~~F~~---g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMD---GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhC---CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 56779997 455666775 99999999995 2345 678999999999999999999999977544445566
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhccc
Q 000672 1259 GTMEEKIYKRQVTKEGLAARVVDRQ 1283 (1360)
Q Consensus 1259 gTIEEkI~~rq~~K~~La~~Vvd~~ 1283 (1360)
-..|.+.......|..-..+...++
T Consensus 128 ~~gE~Rfas~va~rL~sLgAlt~gd 152 (278)
T PF13871_consen 128 LPGERRFASTVARRLESLGALTRGD 152 (278)
T ss_pred CHHHHHHHHHHHHHHhhccccccCc
Confidence 6789999999999988887777654
No 154
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.90 E-value=0.0018 Score=80.22 Aligned_cols=119 Identities=20% Similarity=0.208 Sum_probs=79.4
Q ss_pred CeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccC
Q 000672 1135 DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGI 1214 (1360)
Q Consensus 1135 ~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGL 1214 (1360)
.-+|||=.-...++.....|.+........ . ..-++-+.|+.+.++.. +-|...+ +..|-+++||..+...|
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~~---~-~~~~lply~aL~~e~Q~---rvF~p~p-~g~RKvIlsTNIAETSl 330 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPED---C-PELILPLYGALPSEEQS---RVFDPAP-PGKRKVILSTNIAETSL 330 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhcccc---C-cceeeeecccCCHHHhh---ccccCCC-CCcceEEEEcceeeeeE
Confidence 367888877777777777766532111000 0 11356789999987754 4466544 23555799999999999
Q ss_pred CccCCCEEEE----EcCCCCh-----------hHHHHHhHhHhhcCCCCcEEEEEEecCCCH
Q 000672 1215 NLHSANRVII----VDGSWNP-----------TYDLQAIYRAWRYGQTKPVFAYRLMAHGTM 1261 (1360)
Q Consensus 1215 NL~~An~VIi----~D~~WNP-----------s~~~QAiGRa~RiGQkK~V~VyrLva~gTI 1261 (1360)
.+.+...||= --..||| ..-.||.-|++|-|.+.|..+|||.++.-.
T Consensus 331 TI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 331 TIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 9999888761 1123444 244577777777777889999999988765
No 155
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.84 E-value=0.0012 Score=84.71 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCC-CCHHHHHHHHHHHhCC
Q 000672 1117 SGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGR-TESSERQKLVERFNEP 1195 (1360)
Q Consensus 1117 S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGs-ts~~eR~~iI~~Fn~~ 1195 (1360)
..|..++++-+.++...|..|||-+.++..-..|..+|.. .|+++-.++.. ...+.-..+|..=-.
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~------------~gi~h~vLNAk~~~~~~EA~IIa~AG~- 488 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQE------------QGIPHNLLNAKPENVEREAEIVAQAGR- 488 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHH------------cCCchheeeCCCcchHhHHHHHHhcCC-
Confidence 4799999999988888999999999999999999999996 68888888876 332333445554222
Q ss_pred CCCCceEEEeecccccccCCcc
Q 000672 1196 LNKRVKCTLISTRAGSLGINLH 1217 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~ 1217 (1360)
.+. +-|+|..+|.|-++.
T Consensus 489 -~Ga---VTIATNMAGRGTDIk 506 (939)
T PRK12902 489 -KGA---VTIATNMAGRGTDII 506 (939)
T ss_pred -CCc---EEEeccCCCCCcCEe
Confidence 222 577888888886643
No 156
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.83 E-value=9.8e-05 Score=76.09 Aligned_cols=130 Identities=19% Similarity=0.293 Sum_probs=68.7
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHH-HHHhcccCCCceEEEechhhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYT-AMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAE 829 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~-ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~ 829 (1360)
++.--+|-.-.|.|||..++--+.. .+. ...++||+.|..++. +|+.+.+.+ .++++.. .. ...
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~----~~~rvLvL~PTRvva---~em~~aL~~--~~~~~~t--~~-~~~--- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK----RRLRVLVLAPTRVVA---EEMYEALKG--LPVRFHT--NA-RMR--- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH----TT--EEEEESSHHHH---HHHHHHTTT--SSEEEES--TT-SS----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH----ccCeEEEecccHHHH---HHHHHHHhc--CCcccCc--ee-eec---
Confidence 3455677788999999987754332 222 235899999988764 455555543 2233331 11 100
Q ss_pred HHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCcccCCcchHHHHH-Hhhc---ccceEE
Q 000672 830 LLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQA-LKQV---KCQRRI 905 (1360)
Q Consensus 830 ~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~IKN~~Sk~ska-l~~L---ka~~Rl 905 (1360)
.......|-+++|.+|..... ...-..+|++||+||||-. .+.|..... +..+ .....+
T Consensus 68 ---~~~g~~~i~vMc~at~~~~~~-------------~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i 130 (148)
T PF07652_consen 68 ---THFGSSIIDVMCHATYGHFLL-------------NPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVI 130 (148)
T ss_dssp ------SSSSEEEEEHHHHHHHHH-------------TSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEE
T ss_pred ---cccCCCcccccccHHHHHHhc-------------CcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEE
Confidence 112455688899988753211 1111238999999999964 444433322 2222 223689
Q ss_pred EEeCCCC
Q 000672 906 ALTGSPL 912 (1360)
Q Consensus 906 lLTGTPi 912 (1360)
+|||||-
T Consensus 131 ~mTATPP 137 (148)
T PF07652_consen 131 FMTATPP 137 (148)
T ss_dssp EEESS-T
T ss_pred EEeCCCC
Confidence 9999994
No 157
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00045 Score=85.76 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=50.9
Q ss_pred HHHHhCCCCCCceEEEeecccccccCCccCCCEEE-----------------EEcCCC-ChhHHHHHhHhHhhcCCCCcE
Q 000672 1189 VERFNEPLNKRVKCTLISTRAGSLGINLHSANRVI-----------------IVDGSW-NPTYDLQAIYRAWRYGQTKPV 1250 (1360)
Q Consensus 1189 I~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VI-----------------i~D~~W-NPs~~~QAiGRa~RiGQkK~V 1250 (1360)
.+-|...+.+ .++.+++|.++.+.|.+++..+|| -|...| +.+.-.||-||++|+| +-
T Consensus 620 ~RVF~~~p~g-~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pG 695 (1172)
T KOG0926|consen 620 MRVFDEVPKG-ERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PG 695 (1172)
T ss_pred hhhccCCCCC-ceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CC
Confidence 4457665544 678999999999999999999988 344555 5677789999999988 45
Q ss_pred EEEEEecC
Q 000672 1251 FAYRLMAH 1258 (1360)
Q Consensus 1251 ~VyrLva~ 1258 (1360)
+.|||+..
T Consensus 696 HcYRLYSS 703 (1172)
T KOG0926|consen 696 HCYRLYSS 703 (1172)
T ss_pred ceeehhhh
Confidence 77888743
No 158
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.80 E-value=0.0017 Score=84.43 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=80.2
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
..-+|||=.-...++.....|.... ......++-++|..+.++..+ -|+..+.++ +-+++||.++..+
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~--------l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~-RKVVlATNIAETS 326 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAE--------LGDDLEILPLYGALSAEEQVR---VFEPAPGGK-RKVVLATNIAETS 326 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhcc--------ccCCcEEeeccccCCHHHHHh---hcCCCCCCc-ceEEEEccccccc
Confidence 3468888887777777777776410 114577889999999887666 576554442 3379999999999
Q ss_pred CCccCCCEEE--------EEcCC----------CChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHH
Q 000672 1214 INLHSANRVI--------IVDGS----------WNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTME 1262 (1360)
Q Consensus 1214 LNL~~An~VI--------i~D~~----------WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIE 1262 (1360)
|++.+...|| .|++- =+-+.-.||-||++| +.+=..|||++++..+
T Consensus 327 LTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 327 LTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred eeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 9999988887 22221 233455677777766 6677899999986655
No 159
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.74 E-value=0.0024 Score=81.63 Aligned_cols=69 Identities=28% Similarity=0.219 Sum_probs=50.8
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCCC-----ChhHHHHHhHhHhhcCC
Q 000672 1173 WYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSW-----NPTYDLQAIYRAWRYGQ 1246 (1360)
Q Consensus 1173 ~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~W-----NPs~~~QAiGRa~RiGQ 1246 (1360)
+.+.+.+.+.++|.-+=..|++ +.++ +++.|....-|+||++ .+||+=-|.. .-..+.|.+||++|.|=
T Consensus 525 vAyHhaGLT~eER~~iE~afr~---g~i~-vl~aTSTlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFRE---GNIF-VLVATSTLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred ceecccccccchHHHHHHHHHh---cCeE-EEEecchhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 4556667788899888889986 4454 4666667999999985 5666655543 34578899999999873
No 160
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.69 E-value=0.0094 Score=76.60 Aligned_cols=113 Identities=21% Similarity=0.185 Sum_probs=88.4
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
...|+.++++-+..+...|..|||-+.+...-..+...|.+ .|++...+...-. .|+.-+-.+.-
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~------------~~i~h~VLNAk~h--~~EA~Iia~AG- 475 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRK------------AGIPHNVLNAKNH--AREAEIIAQAG- 475 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHh------------cCCCceeeccccH--HHHHHHHhhcC-
Confidence 34799999999999999999999999999999999999986 6888888877766 44444444431
Q ss_pred CCCCceEEEeecccccccCCcc-CCC----------EEEEEcCCCChhHHHHHhHhHhhcCC
Q 000672 1196 LNKRVKCTLISTRAGSLGINLH-SAN----------RVIIVDGSWNPTYDLQAIYRAWRYGQ 1246 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~-~An----------~VIi~D~~WNPs~~~QAiGRa~RiGQ 1246 (1360)
..+ -+=|+|.-+|.|-++. +.+ +||=-+..=+-..+.|-.||++|.|-
T Consensus 476 ~~g---aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 476 QPG---AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred CCC---ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 112 2478899999999987 444 46666666667777899999999994
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.63 E-value=0.0032 Score=80.26 Aligned_cols=107 Identities=18% Similarity=0.290 Sum_probs=73.6
Q ss_pred HHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEE
Q 000672 1124 LDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCT 1203 (1360)
Q Consensus 1124 ~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~Vl 1203 (1360)
...|..-...|++|.|||......++++++... .+..++.++|..+..+ ++.+ .+++|
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~------------~~~~Vl~l~s~~~~~d----v~~W-----~~~~V- 329 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCAR------------FTKKVLVLNSTDKLED----VESW-----KKYDV- 329 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHh------------cCCeEEEEcCCCCccc----cccc-----cceeE-
Confidence 344444456699999999999999999999986 4677888888776552 2333 33554
Q ss_pred EeecccccccCCccC--CCEEEEE--cCCCChhH--HHHHhHhHhhcCCCCcEEEE
Q 000672 1204 LISTRAGSLGINLHS--ANRVIIV--DGSWNPTY--DLQAIYRAWRYGQTKPVFAY 1253 (1360)
Q Consensus 1204 LISTkAGgeGLNL~~--An~VIi~--D~~WNPs~--~~QAiGRa~RiGQkK~V~Vy 1253 (1360)
++=|.+.+.|+++-. .+.|+.| .....|.. ..|.+|||-.+.. ++++||
T Consensus 330 viYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~ 384 (824)
T PF02399_consen 330 VIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVY 384 (824)
T ss_pred EEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEE
Confidence 555668888988863 4666665 33344543 5899999988764 345544
No 162
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.61 E-value=0.0055 Score=79.63 Aligned_cols=129 Identities=19% Similarity=0.219 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhhhcC--CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCC
Q 000672 1119 KMVLLLDILTMCSNM--GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPL 1196 (1360)
Q Consensus 1119 Kl~~L~eiL~~~~~~--g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~ 1196 (1360)
...++..++..+... ...||||-.-..-+..+...|........ ...+-+..++++++..+.+.+ |+.++
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~-----~~~~~ilplHs~~~s~eQ~~V---F~~pp 467 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFAD-----SLKFAILPLHSSIPSEEQQAV---FKRPP 467 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccccc-----ccceEEEeccccCChHHHHHh---cCCCC
Confidence 445555555544332 45899999999888888888864221111 023567788999998765544 66665
Q ss_pred CCCceEEEeecccccccCCccCCCEEE--------EEcCC---------C-ChhHHHHHhHhHhhcCCCCcEEEEEEecC
Q 000672 1197 NKRVKCTLISTRAGSLGINLHSANRVI--------IVDGS---------W-NPTYDLQAIYRAWRYGQTKPVFAYRLMAH 1258 (1360)
Q Consensus 1197 n~~v~VlLISTkAGgeGLNL~~An~VI--------i~D~~---------W-NPs~~~QAiGRa~RiGQkK~V~VyrLva~ 1258 (1360)
.+ ++-+|++|..+...|.+...-+|| .|||. | +.+.-.||.||++| .++=..|+|++.
T Consensus 468 ~g-~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~ 543 (924)
T KOG0920|consen 468 KG-TRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTR 543 (924)
T ss_pred CC-cchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeech
Confidence 44 344799999999999999877777 44443 2 33556799988888 456688888876
Q ss_pred C
Q 000672 1259 G 1259 (1360)
Q Consensus 1259 g 1259 (1360)
.
T Consensus 544 ~ 544 (924)
T KOG0920|consen 544 S 544 (924)
T ss_pred h
Confidence 5
No 163
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.57 E-value=1.5e-05 Score=67.98 Aligned_cols=47 Identities=30% Similarity=0.856 Sum_probs=38.0
Q ss_pred cccccCC---CCceeecCCcccccchhhhcccCCcccccccccCCCceeecCCc
Q 000672 536 YCVWCGR---SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 586 (1360)
Q Consensus 536 ~C~~C~~---gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p 586 (1360)
+|.+|+. ++.+|.||.|.+.||..|+.++...... ..+.|.|+.|.+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~----~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEI----PSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSH----HSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccC----CCCcEECcCCcC
Confidence 5788877 8999999999999999999877665432 234899999964
No 164
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.44 E-value=4e-05 Score=84.05 Aligned_cols=72 Identities=25% Similarity=0.666 Sum_probs=52.7
Q ss_pred ceeeccCcccccccc--ccccc------cccccCcchhhhhhcCcccCCCCCcccccccCCC---CceeecCCcccccch
Q 000672 490 KFYCTACNNVAIEVH--PHPIL------NVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRS---SDLVSCKSCKTLFCT 558 (1360)
Q Consensus 490 ~~~C~~Cg~~~~~~~--~HP~l------~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~g---g~l~~Cd~C~~~fc~ 558 (1360)
-+.|.-||+.-.+.+ +-|.+ --+-|-.|+ ||.+||.. -.|+-||-|.|.||.
T Consensus 246 lvscsdcgrsghpsclqft~nm~~avk~yrwqcieck-----------------~csicgtsenddqllfcddcdrgyhm 308 (336)
T KOG1244|consen 246 LVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECK-----------------YCSICGTSENDDQLLFCDDCDRGYHM 308 (336)
T ss_pred hcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecc-----------------eeccccCcCCCceeEeecccCCceee
Confidence 388999998732211 11111 134577774 99999965 479999999999999
Q ss_pred hhhcccCCcccccccccCCCceeecC
Q 000672 559 TCVKRNISEACLSDEVQASCWQCCCC 584 (1360)
Q Consensus 559 ~Cl~~~~~~~~~~~~~~~~~W~C~~C 584 (1360)
.|+.+++. ..+.+.|+|.+|
T Consensus 309 yclsppm~------eppegswsc~KO 328 (336)
T KOG1244|consen 309 YCLSPPMV------EPPEGSWSCHLC 328 (336)
T ss_pred EecCCCcC------CCCCCchhHHHH
Confidence 99987764 347899999999
No 165
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.36 E-value=0.014 Score=72.12 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=62.9
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEc----CCCCh-----------hH
Q 000672 1169 KGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVD----GSWNP-----------TY 1233 (1360)
Q Consensus 1169 ~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D----~~WNP-----------s~ 1233 (1360)
.++.++-|...++..-.. +-|+..+ +.++-++++|..+...|.+.+...||=-- -.+|| ..
T Consensus 596 ~~L~vlpiYSQLp~dlQ~---kiFq~a~-~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS 671 (1042)
T KOG0924|consen 596 TDLAVLPIYSQLPADLQA---KIFQKAE-GGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPIS 671 (1042)
T ss_pred CceEEEeehhhCchhhhh---hhcccCC-CCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEech
Confidence 356677777777755433 3466443 44666899999999999999988887211 12333 22
Q ss_pred HHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHH
Q 000672 1234 DLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIY 1266 (1360)
Q Consensus 1234 ~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~ 1266 (1360)
-.||--|++|-|.+.|-..|||+++.+....++
T Consensus 672 ~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 672 QANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred hccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 334455555556677889999999988776665
No 166
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.27 E-value=0.0011 Score=80.00 Aligned_cols=110 Identities=23% Similarity=0.233 Sum_probs=80.7
Q ss_pred cCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccc
Q 000672 1132 NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGS 1211 (1360)
Q Consensus 1132 ~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGg 1211 (1360)
..|+=|+-||...- -.+...+.+ ..+....+|.|+.+++.|.+....||++.| .+. +|+.++|.|
T Consensus 356 k~GDCvV~FSkk~I--~~~k~kIE~-----------~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~-e~d-vlVAsDAIG 420 (700)
T KOG0953|consen 356 KPGDCVVAFSKKDI--FTVKKKIEK-----------AGNHKCAVIYGSLPPETRLAQAALFNDPSN-ECD-VLVASDAIG 420 (700)
T ss_pred CCCCeEEEeehhhH--HHHHHHHHH-----------hcCcceEEEecCCCCchhHHHHHHhCCCCC-ccc-eEEeecccc
Confidence 45889999997532 222333332 123458999999999999999999998754 455 588889999
Q ss_pred ccCCccCCCEEEEEcCC---------CChhHHHHHhHhHhhcCCCCc-EEEEEEec
Q 000672 1212 LGINLHSANRVIIVDGS---------WNPTYDLQAIYRAWRYGQTKP-VFAYRLMA 1257 (1360)
Q Consensus 1212 eGLNL~~An~VIi~D~~---------WNPs~~~QAiGRa~RiGQkK~-V~VyrLva 1257 (1360)
.||||. ..||||++.. -.-+...|.-||++|+|.+-+ -.|.-|-.
T Consensus 421 MGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 421 MGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred cccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 999994 7899999875 334567899999999998743 34544443
No 167
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.23 E-value=0.0085 Score=66.09 Aligned_cols=69 Identities=22% Similarity=0.279 Sum_probs=45.6
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcc-eEEEeCCCchHHHHHHHHHHHHHH----hcccCCCceEEEechh-hH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLG-CILAHTMGLGKTFQVIAFLYTAMR----SVNLGLRTALIVTPVN-VL 796 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~G-gILADeMGLGKTlqaIAlI~~ll~----~~~~~~k~~LIV~P~s-Ll 796 (1360)
+|-+.|..+|..++ ...+ .++.-+.|+|||-++.+++..+.. ......+++||++|.+ .+
T Consensus 1 ~ln~~Q~~Ai~~~~--------------~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~av 66 (236)
T PF13086_consen 1 KLNESQREAIQSAL--------------SSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAV 66 (236)
T ss_dssp ---HHHHHHHHHHC--------------TSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHH
T ss_pred CCCHHHHHHHHHHH--------------cCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhH
Confidence 47789999998763 2344 888999999999887777776632 1123457999999966 56
Q ss_pred HHHHHHHHH
Q 000672 797 HNWKQEFMK 805 (1360)
Q Consensus 797 ~QW~~Ei~k 805 (1360)
.+-...+.+
T Consensus 67 d~~~~~l~~ 75 (236)
T PF13086_consen 67 DNILERLKK 75 (236)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 776666666
No 168
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.13 E-value=0.0049 Score=71.81 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=49.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhccc--CCCceEEEechh-hHHHHH
Q 000672 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL--GLRTALIVTPVN-VLHNWK 800 (1360)
Q Consensus 724 LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~--~~k~~LIV~P~s-Ll~QW~ 800 (1360)
.||.|++-++.+++.+ ..+..+|+-.++|+|||+..+..+......... ...+++++++.. ++.|=.
T Consensus 9 ~r~~Q~~~m~~v~~~~----------~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i 78 (289)
T smart00489 9 PYPIQYEFMEELKRVL----------DRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRL 78 (289)
T ss_pred CCHHHHHHHHHHHHHH----------HcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHH
Confidence 4999999888887665 245678999999999999888766544333221 112677777754 445555
Q ss_pred HHHHHh
Q 000672 801 QEFMKW 806 (1360)
Q Consensus 801 ~Ei~k~ 806 (1360)
.++.+.
T Consensus 79 ~~l~~~ 84 (289)
T smart00489 79 EELRKL 84 (289)
T ss_pred HHHHhc
Confidence 566554
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.13 E-value=0.0049 Score=71.81 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=49.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhccc--CCCceEEEechh-hHHHHH
Q 000672 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL--GLRTALIVTPVN-VLHNWK 800 (1360)
Q Consensus 724 LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~--~~k~~LIV~P~s-Ll~QW~ 800 (1360)
.||.|++-++.+++.+ ..+..+|+-.++|+|||+..+..+......... ...+++++++.. ++.|=.
T Consensus 9 ~r~~Q~~~m~~v~~~~----------~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i 78 (289)
T smart00488 9 PYPIQYEFMEELKRVL----------DRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRL 78 (289)
T ss_pred CCHHHHHHHHHHHHHH----------HcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHH
Confidence 4999999888887665 245678999999999999888766544333221 112677777754 445555
Q ss_pred HHHHHh
Q 000672 801 QEFMKW 806 (1360)
Q Consensus 801 ~Ei~k~ 806 (1360)
.++.+.
T Consensus 79 ~~l~~~ 84 (289)
T smart00488 79 EELRKL 84 (289)
T ss_pred HHHHhc
Confidence 566554
No 171
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.06 E-value=0.25 Score=65.37 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=34.8
Q ss_pred CceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCC
Q 000672 1199 RVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTK 1248 (1360)
Q Consensus 1199 ~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK 1248 (1360)
...+++|+|.+...|+++-. +.+ +-++. .-...+|+.||++|-|+..
T Consensus 837 ~~~~i~v~Tqv~E~g~D~df-d~~-~~~~~-~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHDY-DWA-IADPS-SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCCeEEEEeeeEEEEecccC-Cee-eeccC-cHHHHHHHhhcccccccCC
Confidence 34568999999999999863 333 33442 3456799999999999864
No 172
>PRK10536 hypothetical protein; Provisional
Probab=97.04 E-value=0.005 Score=69.84 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=85.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHH
Q 000672 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEF 803 (1360)
Q Consensus 724 LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei 803 (1360)
+-..|...+.++.+ ..-.++--+.|+|||+.++++....+..+. ..+++|+-|.--. .|.
T Consensus 60 ~n~~Q~~~l~al~~--------------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~--~~kIiI~RP~v~~----ge~ 119 (262)
T PRK10536 60 RNEAQAHYLKAIES--------------KQLIFATGEAGCGKTWISAAKAAEALIHKD--VDRIIVTRPVLQA----DED 119 (262)
T ss_pred CCHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHHHHhcCC--eeEEEEeCCCCCc----hhh
Confidence 45677777776632 346788899999999999998886543322 3455555454322 355
Q ss_pred HHhCCCCCCC-eEEE---EecCcchhHHHHHHHHH--hhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEE
Q 000672 804 MKWRPSELKP-LRVF---MLEDVSRDRRAELLAKW--RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDIL 877 (1360)
Q Consensus 804 ~k~~p~~~~~-l~V~---~~~g~~~~~r~~~l~~~--~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlV 877 (1360)
..|+|+.... +..| +++....--....+..+ ...+.|-|.+...+|-.+ ..-++|
T Consensus 120 LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrt-------------------l~~~~v 180 (262)
T PRK10536 120 LGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRT-------------------FENAVV 180 (262)
T ss_pred hCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCc-------------------ccCCEE
Confidence 5666653210 0000 00000000000011111 123445555555444321 134789
Q ss_pred EEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCc
Q 000672 878 VCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNN 915 (1360)
Q Consensus 878 IlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNn 915 (1360)
|+||||++.- .+....+.++....+++++|-|-|.+
T Consensus 181 IvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 181 ILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred EEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 9999999853 55666778888999999999997755
No 173
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.03 E-value=0.0052 Score=78.08 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=58.7
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
|.-.+.||. ...+..+...|... -.+ .+.+.|..+ .|..++++|.........-+|+.|.+..+|
T Consensus 471 G~~lvLfTS-~~~~~~~~~~l~~~-----------l~~-~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 471 GGTLVLTTA-FSHISAIGQLVELG-----------IPA-EIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred CCEEEEech-HHHHHHHHHHHHhh-----------cCC-CEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 444445555 45566666667531 112 245556554 567899999974111112269999999999
Q ss_pred CCc--------c--CCCEEEEEcCCCChhHHHHHhHhHhhc
Q 000672 1214 INL--------H--SANRVIIVDGSWNPTYDLQAIYRAWRY 1244 (1360)
Q Consensus 1214 LNL--------~--~An~VIi~D~~WNPs~~~QAiGRa~Ri 1244 (1360)
+|+ . ....|||.-.|+-|..-. .|..|+
T Consensus 536 vDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~---a~~~~~ 573 (636)
T TIGR03117 536 IDLTHKPVSPDKDNLLTDLIITCAPFGLNRSL---SMLKRI 573 (636)
T ss_pred cccCCccCCCCCCCcccEEEEEeCCCCcCChH---HHHHHH
Confidence 999 2 489999999998874433 444444
No 174
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.91 E-value=0.00035 Score=89.03 Aligned_cols=51 Identities=24% Similarity=0.602 Sum_probs=43.2
Q ss_pred CCCCCcccccccCCCCceeecCCcccccchhhhcccCCcccccccccCCCceeecCC
Q 000672 529 DADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 585 (1360)
Q Consensus 529 d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 585 (1360)
.+--++++|++|.++|+++||.+|||++|..|+.++... .+.+.|.|-+|.
T Consensus 339 ~~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~------~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 339 GEIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFA------VPSAFWECEVCN 389 (1414)
T ss_pred cceeecccccccCcccceeecccCCceEEeeecCCcccc------CCCccchhhhhh
Confidence 455667899999999999999999999999998866543 356789999995
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.77 E-value=0.0012 Score=72.67 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=73.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHH
Q 000672 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEF 803 (1360)
Q Consensus 724 LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei 803 (1360)
+-++|...+..|++ ..-.++.-..|+|||+.|++....+...+. .++++|+-|..-+. +=
T Consensus 5 ~~~~Q~~~~~al~~--------------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~--~~kiii~Rp~v~~~----~~ 64 (205)
T PF02562_consen 5 KNEEQKFALDALLN--------------NDLVIVNGPAGTGKTFLALAAALELVKEGE--YDKIIITRPPVEAG----ED 64 (205)
T ss_dssp -SHHHHHHHHHHHH---------------SEEEEE--TTSSTTHHHHHHHHHHHHTTS---SEEEEEE-S--TT------
T ss_pred CCHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHHHHhCC--CcEEEEEecCCCCc----cc
Confidence 44689999887763 246788889999999999998887776633 45777776754331 11
Q ss_pred HHhCCCCCCCeEEEEecCc-----chhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEE
Q 000672 804 MKWRPSELKPLRVFMLEDV-----SRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1360)
Q Consensus 804 ~k~~p~~~~~l~V~~~~g~-----~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVI 878 (1360)
.-|+|+.... ++..+-.. ..--....+......+.+-+.+...+|-.+ ....+||
T Consensus 65 lGflpG~~~e-K~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt-------------------~~~~~iI 124 (205)
T PF02562_consen 65 LGFLPGDLEE-KMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRT-------------------FDNAFII 124 (205)
T ss_dssp --SS----------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT---------------------B-SEEEE
T ss_pred cccCCCCHHH-HHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCcc-------------------ccceEEE
Confidence 2344442110 00000000 000000111222345667777766665322 1346799
Q ss_pred EeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCch
Q 000672 879 CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNL 916 (1360)
Q Consensus 879 lDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl 916 (1360)
+|||+++.. .+.-..+.++-...+++++|-|.|.+.
T Consensus 125 vDEaQN~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 125 VDEAQNLTP--EELKMILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp E-SGGG--H--HHHHHHHTTB-TT-EEEEEE-------
T ss_pred EecccCCCH--HHHHHHHcccCCCcEEEEecCceeecC
Confidence 999998843 455566778888899999999987653
No 176
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.44 E-value=0.014 Score=65.04 Aligned_cols=151 Identities=19% Similarity=0.189 Sum_probs=92.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 801 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~ 801 (1360)
..|||-|.+.+..|.+ +..+.+.++-.-||-|||-.++=++...+..+ .+=+-+|||++|+.|-.+
T Consensus 22 iliR~~Q~~ia~~mi~-----------~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg---~~LvrviVpk~Ll~q~~~ 87 (229)
T PF12340_consen 22 ILIRPVQVEIAREMIS-----------PPSGKNSVMQLNMGEGKTSVIVPMLALALADG---SRLVRVIVPKALLEQMRQ 87 (229)
T ss_pred ceeeHHHHHHHHHHhC-----------CCCCCCeEeeecccCCccchHHHHHHHHHcCC---CcEEEEEcCHHHHHHHHH
Confidence 4689999999988853 24578899999999999987777666665443 246788899999999888
Q ss_pred HHHHhCCCCCCCeEEEEecC--cch--hHHH----HHHHHHhhcCCEEEEcccccccccccc-------cccchhhHHHH
Q 000672 802 EFMKWRPSELKPLRVFMLED--VSR--DRRA----ELLAKWRAKGGVFLIGYTAFRNLSFGK-------HVKDRNMAREI 866 (1360)
Q Consensus 802 Ei~k~~p~~~~~l~V~~~~g--~~~--~~r~----~~l~~~~~~~~VvItSY~~~r~l~~~~-------~~~~~~~~~~i 866 (1360)
-+..-+.+- ..-+|+.+.- ... .... ..+..-...++|++++++.+.++.... ..........+
T Consensus 88 ~L~~~lg~l-~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~ 166 (229)
T PF12340_consen 88 MLRSRLGGL-LNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKI 166 (229)
T ss_pred HHHHHHHHH-hCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 887665432 2234444432 111 1111 222234467899999999765432110 00001111122
Q ss_pred HhhhcCCCCEEEEeCCcccCCc
Q 000672 867 CHALQDGPDILVCDEAHMIKNT 888 (1360)
Q Consensus 867 ~~ll~~~fdlVIlDEAH~IKN~ 888 (1360)
..++. ....-|+||++.+-+.
T Consensus 167 q~~l~-~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 167 QKWLD-EHSRDILDESDEILSV 187 (229)
T ss_pred HHHHH-hcCCeEeECchhccCc
Confidence 23333 3445699999977543
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.34 E-value=0.024 Score=72.07 Aligned_cols=155 Identities=22% Similarity=0.249 Sum_probs=91.6
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHH----HHHHHHHHhC-CCCC--CCeEEEEecCc
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH----NWKQEFMKWR-PSEL--KPLRVFMLEDV 822 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~----QW~~Ei~k~~-p~~~--~~l~V~~~~g~ 822 (1360)
+...++=+-.|+|+|||.+-+-+|..+.+.. |.-+++||||..-+. .--..+..++ .... .++..++++..
T Consensus 72 ~~~lNiDI~METGTGKTy~YlrtmfeLhk~Y--G~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~ 149 (985)
T COG3587 72 DDKLNIDILMETGTGKTYTYLRTMFELHKKY--GLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDED 149 (985)
T ss_pred CCcceeeEEEecCCCceeeHHHHHHHHHHHh--CceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechH
Confidence 3445677788999999999999888887765 456999999965332 1222333332 2211 34566665521
Q ss_pred chhHHHHHHHHHhhcCCEEEEccccccccccccc-ccch-----h---hHHHHHhhhcCCCCEEEEeCCcccCCcchHHH
Q 000672 823 SRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKH-VKDR-----N---MAREICHALQDGPDILVCDEAHMIKNTRADTT 893 (1360)
Q Consensus 823 ~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~-~~~~-----~---~~~~i~~ll~~~fdlVIlDEAH~IKN~~Sk~s 893 (1360)
. .+.. -.......|++++...+..-.-... +... . .+...-..+...-.+||+||-|++... .+.+
T Consensus 150 ~--~~~~--~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~~ 224 (985)
T COG3587 150 I--EKFK--FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKTY 224 (985)
T ss_pred H--HHHh--hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHHH
Confidence 1 1111 1112334577888777764311000 0000 0 001111223334458999999999765 7889
Q ss_pred HHHhhcccceEEEEeCCC
Q 000672 894 QALKQVKCQRRIALTGSP 911 (1360)
Q Consensus 894 kal~~Lka~~RllLTGTP 911 (1360)
.++..++....+=.+||-
T Consensus 225 ~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 225 GAIKQLNPLLILRFGATF 242 (985)
T ss_pred HHHHhhCceEEEEecccc
Confidence 999999998888888884
No 178
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.26 E-value=0.032 Score=68.85 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=52.5
Q ss_pred chhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhh-HH
Q 000672 719 SISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LH 797 (1360)
Q Consensus 719 ~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sL-l~ 797 (1360)
.+...|-+-|+.++.+.... + .=.++--+.|+|||.+.+-+|..+...+ +++||.+|.++ +.
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~------------k-~l~~I~GPPGTGKT~TlvEiI~qlvk~~----k~VLVcaPSn~AVd 243 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINN------------K-DLLIIHGPPGTGKTRTLVEIISQLVKQK----KRVLVCAPSNVAVD 243 (649)
T ss_pred cCCccccHHHHHHHHHHhcc------------C-CceEeeCCCCCCceeeHHHHHHHHHHcC----CeEEEEcCchHHHH
Confidence 34567889999999988531 2 4467777999999999999998887654 58999999885 77
Q ss_pred HHHHHH
Q 000672 798 NWKQEF 803 (1360)
Q Consensus 798 QW~~Ei 803 (1360)
|-.+.+
T Consensus 244 Niverl 249 (649)
T KOG1803|consen 244 NIVERL 249 (649)
T ss_pred HHHHHh
Confidence 776654
No 179
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.14 E-value=0.024 Score=57.21 Aligned_cols=116 Identities=18% Similarity=0.225 Sum_probs=61.4
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhccc--CCCceEEEechhh-HHHHHHHHHHhCCCCCCCeEEEEecCcchhHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNL--GLRTALIVTPVNV-LHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRA 828 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~--~~k~~LIV~P~sL-l~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~ 828 (1360)
..-+++.-+.|.|||..+-.++..+...... ...-+.|-+|... ...+..++...+...... ......
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~-- 74 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------RQTSDE-- 74 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------TS-HHH--
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------cCCHHH--
Confidence 4567888899999999888877766432111 1123444455544 455555555443221110 000000
Q ss_pred HHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcC-CCCEEEEeCCcccCCcchHHHHHHhhc--ccceEE
Q 000672 829 ELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GPDILVCDEAHMIKNTRADTTQALKQV--KCQRRI 905 (1360)
Q Consensus 829 ~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~-~fdlVIlDEAH~IKN~~Sk~skal~~L--ka~~Rl 905 (1360)
....+...+.. ...+||+||+|++. .......++.+ .....+
T Consensus 75 ---------------------------------l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~v 119 (131)
T PF13401_consen 75 ---------------------------------LRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKV 119 (131)
T ss_dssp ---------------------------------HHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEE
T ss_pred ---------------------------------HHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeE
Confidence 01111111211 22479999999984 24455555555 677889
Q ss_pred EEeCCC
Q 000672 906 ALTGSP 911 (1360)
Q Consensus 906 lLTGTP 911 (1360)
+|+|||
T Consensus 120 vl~G~~ 125 (131)
T PF13401_consen 120 VLVGTP 125 (131)
T ss_dssp EEEESS
T ss_pred EEEECh
Confidence 999999
No 180
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.14 E-value=0.0032 Score=75.78 Aligned_cols=100 Identities=19% Similarity=0.399 Sum_probs=69.0
Q ss_pred CCCceeeccCcccccc---ccccccccccccCcchhhhhh--c------Ccc----------cCCC---CCcccccccCC
Q 000672 487 LSEKFYCTACNNVAIE---VHPHPILNVIVCKDCKCLLEK--K------MHV----------KDAD---CSECYCVWCGR 542 (1360)
Q Consensus 487 ~~~~~~C~~Cg~~~~~---~~~HP~l~~~~C~~C~~~~~~--~------~~~----------~d~d---~~~~~C~~C~~ 542 (1360)
.+++.+|-.|+.-+.+ +-.-|-+..+-|..|..-... + ... .|-| -.+..|.+|..
T Consensus 97 ~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~~~~~n~qc~vC~~ 176 (464)
T KOG4323|consen 97 ENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDSGHKVNLQCSVCYC 176 (464)
T ss_pred chhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccccCccccccceeeeeec
Confidence 5578899999876544 334456677788877532221 1 111 1101 11234888875
Q ss_pred CC-----ceeecCCcccccchhhhcccCCcccccccccCCCceeecCCchh
Q 000672 543 SS-----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 588 (1360)
Q Consensus 543 gg-----~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~~ 588 (1360)
|| .++-|+.|-.-||..|+.+++.+..+.+ +...|+|.+|.-.|
T Consensus 177 g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D--~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 177 GGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGD--PFYEWFCDVCNRGP 225 (464)
T ss_pred CCcCccceeeeecccccHHHHHhccCCCCHhhccC--ccceEeehhhccch
Confidence 55 7999999999999999999999887764 67889999997665
No 181
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.04 E-value=0.12 Score=64.15 Aligned_cols=81 Identities=21% Similarity=0.203 Sum_probs=53.6
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccCCCEEEEEcCC------CCh------------
Q 000672 1170 GKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGS------WNP------------ 1231 (1360)
Q Consensus 1170 Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~------WNP------------ 1231 (1360)
.+-++-|..+.+.+.... -|...+.+ .+-+++.|..+...|.+.+.+.|| ||. +||
T Consensus 506 eliv~PiYaNLPselQak---IFePtP~g-aRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~pi 579 (902)
T KOG0923|consen 506 ELIVLPIYANLPSELQAK---IFEPTPPG-ARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPI 579 (902)
T ss_pred eEEEeeccccCChHHHHh---hcCCCCCC-ceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeee
Confidence 344566777777665443 36544433 344688889999999998888776 332 333
Q ss_pred --hHHHHHhHhHhhcCCCCcEEEEEEecCC
Q 000672 1232 --TYDLQAIYRAWRYGQTKPVFAYRLMAHG 1259 (1360)
Q Consensus 1232 --s~~~QAiGRa~RiGQkK~V~VyrLva~g 1259 (1360)
+.-.||-||++|.| |-..|||++.-
T Consensus 580 SKAsA~QRaGRAGRtg---PGKCfRLYt~~ 606 (902)
T KOG0923|consen 580 SKASANQRAGRAGRTG---PGKCFRLYTAW 606 (902)
T ss_pred chhhhhhhccccCCCC---CCceEEeechh
Confidence 45678888888876 45677777643
No 182
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.02 E-value=0.066 Score=61.51 Aligned_cols=163 Identities=18% Similarity=0.206 Sum_probs=82.7
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHH---
Q 000672 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH--- 797 (1360)
Q Consensus 721 ~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~--- 797 (1360)
...+++-|+-|+-.| ..|-|.=..+|=|||+++..+...... ..+++-||+....+.
T Consensus 75 g~~p~~vQll~~l~L----------------~~G~laEm~TGEGKTli~~l~a~~~AL----~G~~V~vvT~NdyLA~RD 134 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL----------------HKGRLAEMKTGEGKTLIAALPAALNAL----QGKGVHVVTSNDYLAKRD 134 (266)
T ss_dssp S----HHHHHHHHHH----------------HTTSEEEESTTSHHHHHHHHHHHHHHT----TSS-EEEEESSHHHHHHH
T ss_pred CCcccHHHHhhhhhc----------------ccceeEEecCCCCcHHHHHHHHHHHHH----hcCCcEEEeccHHHhhcc
Confidence 344566677666444 146799999999999987544433322 235788888766543
Q ss_pred -HHHHHHHHhCCCCCCCeEEEEecC-cchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCC
Q 000672 798 -NWKQEFMKWRPSELKPLRVFMLED-VSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPD 875 (1360)
Q Consensus 798 -QW~~Ei~k~~p~~~~~l~V~~~~g-~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fd 875 (1360)
+|...|-++++ +.+..... .....|... + ..+|+-.+-..|... .+++ .+..........+++
T Consensus 135 ~~~~~~~y~~LG-----lsv~~~~~~~~~~~r~~~---Y--~~dI~Y~t~~~~~fD----~Lrd-~~~~~~~~~~~r~~~ 199 (266)
T PF07517_consen 135 AEEMRPFYEFLG-----LSVGIITSDMSSEERREA---Y--AADIVYGTNSEFGFD----YLRD-NLALSKNEQVQRGFD 199 (266)
T ss_dssp HHHHHHHHHHTT-------EEEEETTTEHHHHHHH---H--HSSEEEEEHHHHHHH----HHHH-TT-SSGGG--SSSSS
T ss_pred HHHHHHHHHHhh-----hccccCccccCHHHHHHH---H--hCcccccccchhhHH----HHHH-HHhhccchhccCCCC
Confidence 48888888875 44444433 333333322 2 235444433333210 0000 000001112346899
Q ss_pred EEEEeCCcccC-----Cc-------------------chHHHHHHhhcccceEEEEeCCCCCCchhhHH
Q 000672 876 ILVCDEAHMIK-----NT-------------------RADTTQALKQVKCQRRIALTGSPLQNNLMEYY 920 (1360)
Q Consensus 876 lVIlDEAH~IK-----N~-------------------~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~ 920 (1360)
++|+||+..+- ++ .+..++.+.+. -.+..+|||| ....-.|+|
T Consensus 200 ~~ivDEvDs~LiDea~~pl~is~~Ke~~~i~~~~~t~a~is~q~~f~~-Y~~l~GmTGT-a~~~~~e~~ 266 (266)
T PF07517_consen 200 FAIVDEVDSILIDEARTPLIISGAKEGLKITPESLTLASISYQNFFRL-YPKLSGMTGT-AKTEAKEFW 266 (266)
T ss_dssp EEEECTHHHHTTTGCCSEEEEEEHHTTS----SEEEEEEEEHHHHHTT-SSEEEEEESS-TGGGHHHHH
T ss_pred EEEEeccceEEEecCcccccccccccCCccCCCCeEEEEeehHHHHHh-cchheeeCCC-ChhhHhhcC
Confidence 99999987652 10 01112222222 3448899999 666666665
No 183
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.88 E-value=0.1 Score=57.36 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=38.6
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL 796 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl 796 (1360)
+|-+-|++++..++. +..+-.+|.-..|.|||...-.+...+... ..++++++|.+-.
T Consensus 1 ~L~~~Q~~a~~~~l~------------~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~----g~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILT------------SGDRVSVLQGPAGTGKTTLLKALAEALEAA----GKRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHH------------CTCSEEEEEESTTSTHHHHHHHHHHHHHHT----T--EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHh------------cCCeEEEEEECCCCCHHHHHHHHHHHHHhC----CCeEEEECCcHHH
Confidence 477899999998863 234457788889999998765554444332 2589999997643
No 184
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.66 E-value=0.091 Score=69.62 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=62.2
Q ss_pred HHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCce
Q 000672 1122 LLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVK 1201 (1360)
Q Consensus 1122 ~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~ 1201 (1360)
.+.+.|..+...+.+++|+-.+..++..+...|.. ..+. ....|... .|.+++++|+..++.
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~------------~~~~-~l~Qg~~~--~~~~l~~~F~~~~~~--- 696 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQ------------WQVS-HLAQEKNG--TAYNIKKRFDRGEQQ--- 696 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhh------------cCCc-EEEeCCCc--cHHHHHHHHHcCCCe---
Confidence 45555554445577899988888999998888864 1222 34545433 356799999974322
Q ss_pred EEEeecccccccCCcc--CCCEEEEEcCCC-Ch
Q 000672 1202 CTLISTRAGSLGINLH--SANRVIIVDGSW-NP 1231 (1360)
Q Consensus 1202 VlLISTkAGgeGLNL~--~An~VIi~D~~W-NP 1231 (1360)
+|+.+....||++++ .+..||+.-.|+ +|
T Consensus 697 -vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P 728 (820)
T PRK07246 697 -ILLGLGSFWEGVDFVQADRMIEVITRLPFDNP 728 (820)
T ss_pred -EEEecchhhCCCCCCCCCeEEEEEecCCCCCC
Confidence 688889999999997 356667777554 45
No 185
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.65 E-value=0.11 Score=64.48 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=54.7
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhh-HHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sL-l~QW~ 800 (1360)
.+|-.-|..||+..+. ..=.||--+.|+|||++..++++++.+.+ .+|+||++|.++ +.|-.
T Consensus 409 pkLN~SQ~~AV~~VL~--------------rplsLIQGPPGTGKTvtsa~IVyhl~~~~---~~~VLvcApSNiAVDqLa 471 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQ--------------RPLSLIQGPPGTGKTVTSATIVYHLARQH---AGPVLVCAPSNIAVDQLA 471 (935)
T ss_pred hhhchHHHHHHHHHHc--------------CCceeeecCCCCCceehhHHHHHHHHHhc---CCceEEEcccchhHHHHH
Confidence 4577789999988763 23468889999999999999998887763 469999999886 77888
Q ss_pred HHHHHh
Q 000672 801 QEFMKW 806 (1360)
Q Consensus 801 ~Ei~k~ 806 (1360)
.-|++-
T Consensus 472 eKIh~t 477 (935)
T KOG1802|consen 472 EKIHKT 477 (935)
T ss_pred HHHHhc
Confidence 778763
No 186
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.47 E-value=0.038 Score=59.09 Aligned_cols=83 Identities=28% Similarity=0.299 Sum_probs=55.1
Q ss_pred hcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecc--
Q 000672 1131 SNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTR-- 1208 (1360)
Q Consensus 1131 ~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTk-- 1208 (1360)
...+.++|||..+...++.+...+.... -..++.++.- + ...+..+++.|....+ .+|+++.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~--------~~~~~~v~~q-~---~~~~~~~l~~~~~~~~----~il~~v~~g 69 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERL--------EEKGIPVFVQ-G---SKSRDELLEEFKRGEG----AILLAVAGG 69 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS---------E-ETSCEEES-T---CCHHHHHHHHHCCSSS----EEEEEETTS
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhc--------ccccceeeec-C---cchHHHHHHHHHhccC----eEEEEEecc
Confidence 3456899999999999999999887521 0123333333 2 3478899999998422 2677777
Q ss_pred cccccCCccC--CCEEEEEcCCC
Q 000672 1209 AGSLGINLHS--ANRVIIVDGSW 1229 (1360)
Q Consensus 1209 AGgeGLNL~~--An~VIi~D~~W 1229 (1360)
..++|||+.+ +..||+.-.|+
T Consensus 70 ~~~EGiD~~~~~~r~vii~glPf 92 (167)
T PF13307_consen 70 SFSEGIDFPGDLLRAVIIVGLPF 92 (167)
T ss_dssp CCGSSS--ECESEEEEEEES---
T ss_pred cEEEeecCCCchhheeeecCCCC
Confidence 8999999994 78899988887
No 187
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.35 E-value=0.12 Score=69.55 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=65.1
Q ss_pred HHHHHHHHhhh-cCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCC
Q 000672 1121 VLLLDILTMCS-NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKR 1199 (1360)
Q Consensus 1121 ~~L~eiL~~~~-~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~ 1199 (1360)
..+.+.|..+. ..+.++|||..+..++..+...|..... ..++.. ...| ++...|.+++++|+...+
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~--------~~~~~l-l~Qg-~~~~~r~~l~~~F~~~~~-- 805 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEE--------LEGYVL-LAQG-VSSGSRARLTKQFQQFDK-- 805 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhccc--------ccCceE-EecC-CCCCCHHHHHHHHHhcCC--
Confidence 45555554443 3456888888888999999998874210 012222 2223 222357889999997432
Q ss_pred ceEEEeecccccccCCccC--CCEEEEEcCCC-Chh
Q 000672 1200 VKCTLISTRAGSLGINLHS--ANRVIIVDGSW-NPT 1232 (1360)
Q Consensus 1200 v~VlLISTkAGgeGLNL~~--An~VIi~D~~W-NPs 1232 (1360)
-+|+.+.+..+|+|+++ ...||+.-.|+ +|.
T Consensus 806 --~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 806 --AILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred --eEEEecCcccCccccCCCceEEEEEecCCCCCCC
Confidence 25777899999999996 48889998887 564
No 188
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.23 E-value=0.031 Score=67.62 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=92.8
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEP 1195 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~ 1195 (1360)
.+.|+.....++.++...|-++|-||..+....++-...+.++... +.. ---.+..+.|+...++|.++-...-.
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET--~~~--LV~~i~SYRGGY~A~DRRKIE~~~F~- 581 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAET--APH--LVEAITSYRGGYIAEDRRKIESDLFG- 581 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHh--hHH--HHHHHHhhcCccchhhHHHHHHHhhC-
Confidence 4678888888999998899999999999987766654444322110 000 00113346688888888888766443
Q ss_pred CCCCceEEEeecccccccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCC
Q 000672 1196 LNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT 1247 (1360)
Q Consensus 1196 ~n~~v~VlLISTkAGgeGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQk 1247 (1360)
++. .-+|+|.|...||++...+.|++...|.+-+...|..||++|-...
T Consensus 582 --G~L-~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 582 --GKL-CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred --Cee-eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 333 3589999999999999999999999999999999999999996543
No 189
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.23 E-value=0.14 Score=66.21 Aligned_cols=125 Identities=14% Similarity=0.012 Sum_probs=79.0
Q ss_pred CCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHHHHHHHHhCCCCCCCeEEEEecC-cchhHHHHHHHHHh-hc
Q 000672 761 MGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQEFMKWRPSELKPLRVFMLED-VSRDRRAELLAKWR-AK 837 (1360)
Q Consensus 761 MGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g-~~~~~r~~~l~~~~-~~ 837 (1360)
.|.|||-.-+.++...+..+ +.+||++| -++..|+...|...++. ..+..+|+ .+...|...+.... ..
T Consensus 169 ~GSGKTevyl~~i~~~l~~G----k~vLvLvPEi~lt~q~~~rl~~~f~~----~~v~~lhS~l~~~~R~~~w~~~~~G~ 240 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG----RGALVVVPDQRDVDRLEAALRALLGA----GDVAVLSAGLGPADRYRRWLAVLRGQ 240 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC----CeEEEEecchhhHHHHHHHHHHHcCC----CcEEEECCCCCHHHHHHHHHHHhCCC
Confidence 49999999888888877653 47999999 56899999999998873 24555665 34445554444432 33
Q ss_pred CCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCccc--CCcchHHHH----HHh--hcccceEEEEeC
Q 000672 838 GGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMI--KNTRADTTQ----ALK--QVKCQRRIALTG 909 (1360)
Q Consensus 838 ~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~I--KN~~Sk~sk----al~--~Lka~~RllLTG 909 (1360)
..|+|=|...+-.- -.+.++||+||=|.- |...+..+. ++. +...-..++.|+
T Consensus 241 ~~IViGtRSAvFaP-------------------~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSa 301 (665)
T PRK14873 241 ARVVVGTRSAVFAP-------------------VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGH 301 (665)
T ss_pred CcEEEEcceeEEec-------------------cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECC
Confidence 45666665443210 016789999999864 333222211 111 123455677799
Q ss_pred CCC
Q 000672 910 SPL 912 (1360)
Q Consensus 910 TPi 912 (1360)
||-
T Consensus 302 TPS 304 (665)
T PRK14873 302 ART 304 (665)
T ss_pred CCC
Confidence 993
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.11 E-value=0.3 Score=63.11 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=51.8
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhh-HHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sL-l~QW~ 800 (1360)
..|-+.|+.+|.+++. .....++--..|+|||.++++++..+...+ .++||++|.+. +.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~-------------~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g----~~VLv~a~sn~Avd~l~ 218 (637)
T TIGR00376 156 PNLNESQKEAVSFALS-------------SKDLFLIHGPPGTGKTRTLVELIRQLVKRG----LRVLVTAPSNIAVDNLL 218 (637)
T ss_pred CCCCHHHHHHHHHHhc-------------CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC----CCEEEEcCcHHHHHHHH
Confidence 4688999999988642 224677888899999999999888776543 38999999775 66777
Q ss_pred HHHHH
Q 000672 801 QEFMK 805 (1360)
Q Consensus 801 ~Ei~k 805 (1360)
+.+..
T Consensus 219 e~l~~ 223 (637)
T TIGR00376 219 ERLAL 223 (637)
T ss_pred HHHHh
Confidence 77765
No 191
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.90 E-value=0.31 Score=59.15 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=41.8
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN 794 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s 794 (1360)
..+|-|.. +|.+. ++ +-+.++.|+|-.+.|.|||+..++++.++..+.+.. -.-||-|...
T Consensus 16 ~iYPEQ~~---YM~el-----Kr--sLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~-~~KliYCSRT 76 (755)
T KOG1131|consen 16 YIYPEQYE---YMREL-----KR--SLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDE-HRKLIYCSRT 76 (755)
T ss_pred ccCHHHHH---HHHHH-----HH--hhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcc-cceEEEecCc
Confidence 46787765 55431 11 115678899999999999999999998877665432 2457777543
No 192
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.80 E-value=0.046 Score=72.80 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=51.9
Q ss_pred hhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCch--HHHHHHHHHHHHHHhcccCCCceEEEechhhHH
Q 000672 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLG--KTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 797 (1360)
Q Consensus 720 l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLG--KTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~ 797 (1360)
....+.+||.....-.... ...+..+++..|+| ||+.+..+......... ..+.++++|..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 146 (866)
T COG0553 81 SRFILIPHQLDIALEVLNE------------LALRVLIADEVGLGDLKTIEAGAILKELLLRGE--IKRVLILVPKTLRA 146 (866)
T ss_pred cccccCcchhhhhhhhhhh------------hhhchhhcccccccccccccccccchHhhhhhh--hccceeccchHHHH
Confidence 3455677777666433221 12337889999999 89988777666544433 35899999999999
Q ss_pred HHHHHHHHhC
Q 000672 798 NWKQEFMKWR 807 (1360)
Q Consensus 798 QW~~Ei~k~~ 807 (1360)
+|..+...++
T Consensus 147 ~~~~e~~~~~ 156 (866)
T COG0553 147 QWVVELLEKF 156 (866)
T ss_pred HHHHHhhhhc
Confidence 9999987763
No 193
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.47 E-value=0.2 Score=60.16 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=31.6
Q ss_pred eEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHH-HHHHH
Q 000672 755 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW-KQEFM 804 (1360)
Q Consensus 755 gILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW-~~Ei~ 804 (1360)
.|+--..|+|||+.++.++..+.... ....++++|+...+.+. ...+.
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~--~~~~~~~l~~n~~l~~~l~~~l~ 52 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSE--EGKKVLYLCGNHPLRNKLREQLA 52 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccc--cCCceEEEEecchHHHHHHHHHh
Confidence 45666789999999999888772111 23467788876655554 34443
No 194
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=94.43 E-value=0.015 Score=67.21 Aligned_cols=43 Identities=23% Similarity=0.585 Sum_probs=35.3
Q ss_pred cccccCCCCceeecCC--cc-cccchhhhcccCCcccccccccCCCceeecCCch
Q 000672 536 YCVWCGRSSDLVSCKS--CK-TLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 536 ~C~~C~~gg~l~~Cd~--C~-~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
+|- |...|+.+-||+ || .=||..|+... ..+.|.|+|+-|...
T Consensus 223 ~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~--------~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 223 ICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLK--------TKPKGKWYCPRCKAE 268 (274)
T ss_pred Eec-ccccccccccCCCCCCcceEEEeccccc--------cCCCCcccchhhhhh
Confidence 566 779999999999 99 89999996543 445688999999654
No 195
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.29 E-value=0.31 Score=62.45 Aligned_cols=149 Identities=17% Similarity=0.102 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHH-
Q 000672 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE- 802 (1360)
Q Consensus 724 LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~E- 802 (1360)
.-++|+.++.-.. ...-++|.-..|+|||.++..++..+.........++++++|+.-...=..|
T Consensus 153 ~~d~Qk~Av~~a~--------------~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~ 218 (615)
T PRK10875 153 EVDWQKVAAAVAL--------------TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTES 218 (615)
T ss_pred CCHHHHHHHHHHh--------------cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHH
Confidence 3489999997653 2456889999999999998888877655332222468888998755443333
Q ss_pred HHHhCCCCCCCeEEEEecCcch---hHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEE
Q 000672 803 FMKWRPSELKPLRVFMLEDVSR---DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 879 (1360)
Q Consensus 803 i~k~~p~~~~~l~V~~~~g~~~---~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIl 879 (1360)
+..-... +.+ ....+ ......+..+. ..... ...+. ........+|+|||
T Consensus 219 ~~~~~~~----~~~---~~~~~~~~~~~a~TiHrlL-------------g~~~~-----~~~~~--~~~~~~l~~dvlIv 271 (615)
T PRK10875 219 LGKALRQ----LPL---TDEQKKRIPEEASTLHRLL-------------GAQPG-----SQRLR--YHAGNPLHLDVLVV 271 (615)
T ss_pred HHhhhhc----ccc---chhhhhcCCCchHHHHHHh-------------CcCCC-----ccchh--hccccCCCCCeEEE
Confidence 2211110 000 00000 00001111110 00000 00000 00011126799999
Q ss_pred eCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCc
Q 000672 880 DEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNN 915 (1360)
Q Consensus 880 DEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNn 915 (1360)
|||-.+- ....++.+..+....|++|-|-|-|--
T Consensus 272 DEaSMvd--~~lm~~ll~al~~~~rlIlvGD~~QL~ 305 (615)
T PRK10875 272 DEASMVD--LPMMARLIDALPPHARVIFLGDRDQLA 305 (615)
T ss_pred ChHhccc--HHHHHHHHHhcccCCEEEEecchhhcC
Confidence 9999884 345667778888888999999987643
No 196
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.20 E-value=0.23 Score=66.90 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=49.8
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhH-HH-H
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL-HN-W 799 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl-~Q-W 799 (1360)
..-||-|.+-...+.+.+. .+..+++=..+|+|||+--+.-+..... ...++++|-+++..+ .| +
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~----------~~~~~~iEA~TGtGKTlaYLlpa~~~a~---~~~~~vvIsT~T~~LQ~Ql~ 322 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALR----------DSEHALIEAGTGTGKSLAYLLPAAYFAK---KKEEPVVISTYTIQLQQQLL 322 (928)
T ss_pred CcCCHHHHHHHHHHHHHHh----------cCCCEEEECCCCCchhHHHHHHHHHHhh---ccCCeEEEEcCCHHHHHHHH
Confidence 3678999998877776542 3455677779999999765443322211 123578888886544 44 4
Q ss_pred HHH---HHHhCCCCCCCeEEEEecC
Q 000672 800 KQE---FMKWRPSELKPLRVFMLED 821 (1360)
Q Consensus 800 ~~E---i~k~~p~~~~~l~V~~~~g 821 (1360)
..+ +.+.++. ++++....|
T Consensus 323 ~kDiP~L~~~~~~---~~~~~~lKG 344 (928)
T PRK08074 323 EKDIPLLQKIFPF---PVEAALLKG 344 (928)
T ss_pred HhhHHHHHHHcCC---CceEEEEEc
Confidence 444 3444443 244444443
No 197
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.17 E-value=0.021 Score=63.65 Aligned_cols=42 Identities=26% Similarity=0.589 Sum_probs=34.2
Q ss_pred cccccCCC---CceeecCCcccccchhhhcccCCcccccccccCCCceee--cCC
Q 000672 536 YCVWCGRS---SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCC--CCS 585 (1360)
Q Consensus 536 ~C~~C~~g---g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~--~C~ 585 (1360)
.|++|++. -+.+-||-|.|.||+.|+ |-+ ..+.|.|.|- +|.
T Consensus 316 lC~IC~~P~~E~E~~FCD~CDRG~HT~CV----GL~----~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 316 LCRICLGPVIESEHLFCDVCDRGPHTLCV----GLQ----DLPRGEWICDMRCRE 362 (381)
T ss_pred hhhccCCcccchheeccccccCCCCcccc----ccc----cccCccchhhhHHHH
Confidence 79999876 488999999999999994 555 4467999998 563
No 198
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.99 E-value=0.61 Score=60.65 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=89.0
Q ss_pred cCcchhh----hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEe
Q 000672 716 IPSSISA----KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 791 (1360)
Q Consensus 716 vP~~l~~----~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~ 791 (1360)
++|.+.. .|-.-|++|+...+.. .....|++ -.|+|||-+..+++..+...+ +++|+.+
T Consensus 658 ~~p~~~~~~~~~LN~dQr~A~~k~L~a------------edy~LI~G-MPGTGKTTtI~~LIkiL~~~g----kkVLLts 720 (1100)
T KOG1805|consen 658 LIPKIKKIILLRLNNDQRQALLKALAA------------EDYALILG-MPGTGKTTTISLLIKILVALG----KKVLLTS 720 (1100)
T ss_pred cCchhhHHHHhhcCHHHHHHHHHHHhc------------cchheeec-CCCCCchhhHHHHHHHHHHcC----CeEEEEe
Confidence 4444444 8889999999766531 23344444 469999998888888776543 5788888
Q ss_pred chh-hHHHHHHHHHHhCCCCCCCeEEEEecCcch------------hHHHHHHHHHhhcCCEEEEccccccccccccccc
Q 000672 792 PVN-VLHNWKQEFMKWRPSELKPLRVFMLEDVSR------------DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVK 858 (1360)
Q Consensus 792 P~s-Ll~QW~~Ei~k~~p~~~~~l~V~~~~g~~~------------~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~ 858 (1360)
=++ -|.|-.--+..+--. -+++...+.... .+....+..+.....||.+|--.+..
T Consensus 721 yThsAVDNILiKL~~~~i~---~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~-------- 789 (1100)
T KOG1805|consen 721 YTHSAVDNILIKLKGFGIY---ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH-------- 789 (1100)
T ss_pred hhhHHHHHHHHHHhccCcc---eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc--------
Confidence 644 577776666554211 111111111111 11112222333333444444322211
Q ss_pred chhhHHHHHhhh-cCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCC
Q 000672 859 DRNMAREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQ 913 (1360)
Q Consensus 859 ~~~~~~~i~~ll-~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiq 913 (1360)
.++ ...||++|+|||-.|--+ -++.-|....+++|-|-+.|
T Consensus 790 ---------plf~~R~FD~cIiDEASQI~lP-----~~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 790 ---------PLFVNRQFDYCIIDEASQILLP-----LCLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred ---------hhhhccccCEEEEccccccccc-----hhhhhhhhcceEEEeccccc
Confidence 112 237999999999877443 24555667788888888766
No 199
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.99 E-value=0.36 Score=63.22 Aligned_cols=136 Identities=21% Similarity=0.148 Sum_probs=81.7
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHH
Q 000672 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 800 (1360)
Q Consensus 721 ~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~ 800 (1360)
...|-+-|++++..+. ...-.+|--..|+|||..+-+++..+...+ +..++++++|........
T Consensus 321 ~~~l~~~Q~~Ai~~~~--------------~~~~~iitGgpGTGKTt~l~~i~~~~~~~~--~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 321 RKGLSEEQKQALDTAI--------------QHKVVILTGGPGTGKTTITRAIIELAEELG--GLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred CCCCCHHHHHHHHHHH--------------hCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCceEEEEeCchHHHHHH
Confidence 3468899999998763 234688999999999987777666554332 124788889988777654
Q ss_pred HHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEe
Q 000672 801 QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCD 880 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlD 880 (1360)
.|.. .. .... -...+ .+.... .. . ... -.....++||+|
T Consensus 385 ~e~~---g~-----~a~T--------ih~lL-~~~~~~---------~~---------~----~~~--~~~~~~~llIvD 423 (720)
T TIGR01448 385 GEVT---GL-----TAST--------IHRLL-GYGPDT---------FR---------H----NHL--EDPIDCDLLIVD 423 (720)
T ss_pred HHhc---CC-----cccc--------HHHHh-hccCCc---------cc---------h----hhh--hccccCCEEEEe
Confidence 4431 10 0000 00011 010000 00 0 000 001267899999
Q ss_pred CCcccCCcchHHHHHHhhcccceEEEEeCCCCCCc
Q 000672 881 EAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNN 915 (1360)
Q Consensus 881 EAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNn 915 (1360)
||+.+-. ......+..+....+++|-|=|-|--
T Consensus 424 EaSMvd~--~~~~~Ll~~~~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 424 ESSMMDT--WLALSLLAALPDHARLLLVGDTDQLP 456 (720)
T ss_pred ccccCCH--HHHHHHHHhCCCCCEEEEECcccccc
Confidence 9999943 34456667777788999999987743
No 200
>PRK04296 thymidine kinase; Provisional
Probab=93.72 E-value=0.22 Score=54.50 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=25.1
Q ss_pred eEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec
Q 000672 755 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 792 (1360)
Q Consensus 755 gILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P 792 (1360)
.++.-+||.|||..++.++..+... .++++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~----g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER----GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc----CCeEEEEec
Confidence 4677899999998888887766443 246777755
No 201
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.68 E-value=0.46 Score=60.70 Aligned_cols=150 Identities=17% Similarity=0.130 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhccc-CCCceEEEechhhHHH-HHHHH
Q 000672 726 AHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVTPVNVLHN-WKQEF 803 (1360)
Q Consensus 726 phQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~-~~k~~LIV~P~sLl~Q-W~~Ei 803 (1360)
+.|+.++..++. ..-.+|.-..|+|||.++..++..+...... +..++++++|+.-... ..+-+
T Consensus 148 ~~Qk~A~~~al~--------------~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~ 213 (586)
T TIGR01447 148 NWQKVAVALALK--------------SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESL 213 (586)
T ss_pred HHHHHHHHHHhh--------------CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHH
Confidence 799999987742 3568899999999999988888776554321 1236889999875443 33333
Q ss_pred HHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCc
Q 000672 804 MKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAH 883 (1360)
Q Consensus 804 ~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH 883 (1360)
..-... +... ... .. .-.+-..|...+-..... ...+.. ..--...+++||||||-
T Consensus 214 ~~~~~~----l~~~------~~~----~~----~~~~~a~TiHrlLg~~~~----~~~~~~--~~~~~l~~dvlIiDEaS 269 (586)
T TIGR01447 214 RKAVKN----LAAA------EAL----IA----ALPSEAVTIHRLLGIKPD----TKRFRH--HERNPLPLDVLVVDEAS 269 (586)
T ss_pred Hhhhcc----cccc------hhh----hh----ccccccchhhhhhcccCC----cchhhh--cccCCCcccEEEEcccc
Confidence 222111 1000 000 00 000000111111000000 000000 00011268999999999
Q ss_pred ccCCcchHHHHHHhhcccceEEEEeCCCCCCc
Q 000672 884 MIKNTRADTTQALKQVKCQRRIALTGSPLQNN 915 (1360)
Q Consensus 884 ~IKN~~Sk~skal~~Lka~~RllLTGTPiqNn 915 (1360)
.+-. ....+.+..+....|++|.|=|-|--
T Consensus 270 Mvd~--~l~~~ll~al~~~~rlIlvGD~~QLp 299 (586)
T TIGR01447 270 MVDL--PLMAKLLKALPPNTKLILLGDKNQLP 299 (586)
T ss_pred cCCH--HHHHHHHHhcCCCCEEEEECChhhCC
Confidence 8843 35566777788888999999987743
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.25 E-value=1.6 Score=53.10 Aligned_cols=75 Identities=8% Similarity=0.124 Sum_probs=49.5
Q ss_pred CCCEEEEeCCcccCCcch---HHHHHHhhcc--cceEEEEeCCCCCCchhhHHhhhhhhccC-----------CCCChHH
Q 000672 873 GPDILVCDEAHMIKNTRA---DTTQALKQVK--CQRRIALTGSPLQNNLMEYYCMVDFVREG-----------FLGSSHE 936 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~S---k~skal~~Lk--a~~RllLTGTPiqNnl~EL~sLL~fL~p~-----------~lgs~~e 936 (1360)
++++||+|++.+...... ...+.+..+. ....++|+||-=++.+.+++.-+..+.+. .+|..-.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~l~ 333 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLIS 333 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchHHHH
Confidence 789999999988753322 2222333332 24679999999888888888877665543 2344455
Q ss_pred HHhhccCCccc
Q 000672 937 FRNRFQNPIEN 947 (1360)
Q Consensus 937 F~~~f~~pi~~ 947 (1360)
+...+..|+..
T Consensus 334 ~~~~~~~Pi~y 344 (388)
T PRK12723 334 LIYEMRKEVSY 344 (388)
T ss_pred HHHHHCCCEEE
Confidence 66666777654
No 203
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=93.18 E-value=0.77 Score=59.69 Aligned_cols=102 Identities=22% Similarity=0.170 Sum_probs=74.3
Q ss_pred CCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCC-cEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccc
Q 000672 1133 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGK-DWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGS 1211 (1360)
Q Consensus 1133 ~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi-~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGg 1211 (1360)
.+.++|||..+..++..+...+... .. -.+...|..+ +..++++|....+. .|++.+...+
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~------------~~~~~v~~q~~~~---~~~~l~~f~~~~~~---~~lv~~gsf~ 539 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDE------------RSTLPVLTQGEDE---REELLEKFKASGEG---LILVGGGSFW 539 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhc------------CccceeeecCCCc---HHHHHHHHHHhcCC---eEEEeecccc
Confidence 3558999999999999999988852 11 2345555554 44899999985443 4899999999
Q ss_pred ccCCccC--CCEEEEEcCCCC-h-----------------------------hHHHHHhHhHhhcCCCCcEEE
Q 000672 1212 LGINLHS--ANRVIIVDGSWN-P-----------------------------TYDLQAIYRAWRYGQTKPVFA 1252 (1360)
Q Consensus 1212 eGLNL~~--An~VIi~D~~WN-P-----------------------------s~~~QAiGRa~RiGQkK~V~V 1252 (1360)
+|+|+.+ ...||+.-.|+- | ....|++||+.|--+.+-|.|
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred CcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 9999995 588888888874 3 134589999999555555544
No 204
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.05 E-value=0.45 Score=61.29 Aligned_cols=93 Identities=18% Similarity=0.301 Sum_probs=52.0
Q ss_pred CCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccC--CCcEEEecCCCCHHHHHHHHHHHhC----CCCCCceEEEee
Q 000672 1133 MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK--GKDWYRLDGRTESSERQKLVERFNE----PLNKRVKCTLIS 1206 (1360)
Q Consensus 1133 ~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~--Gi~~~rLdGsts~~eR~~iI~~Fn~----~~n~~v~VlLIS 1206 (1360)
....+|||-.+..+++.+..+...- ..|.. +..-+.+- --+..+=.+++.+|.+ +....+-.+.+.
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~-------~~we~~~~vk~l~vE-Pr~k~~f~e~m~~y~~~i~~pes~ga~~~aVc 631 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNR-------GLWERMEKVKKLVVE-PRSKSEFTEVMSRYYNAIADPESSGAVFFAVC 631 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcc-------hHHHHhhcccCceec-cCCccchHHHHHHHHHHhhCccccceEEEEEe
Confidence 3456999999988888886555431 12221 11111111 1122233344555532 222223245667
Q ss_pred cccccccCCcc--CCCEEEEEcCCCChhH
Q 000672 1207 TRAGSLGINLH--SANRVIIVDGSWNPTY 1233 (1360)
Q Consensus 1207 TkAGgeGLNL~--~An~VIi~D~~WNPs~ 1233 (1360)
-...++||++. .+..||+.-.|+=|..
T Consensus 632 RGKVSEGlDFsD~~~RaVI~tGlPyP~~~ 660 (945)
T KOG1132|consen 632 RGKVSEGLDFSDDNGRAVIITGLPYPPVM 660 (945)
T ss_pred cccccCCCCccccCCceeEEecCCCCCCC
Confidence 77889999998 5777888888776543
No 205
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.99 E-value=0.059 Score=67.21 Aligned_cols=46 Identities=28% Similarity=0.709 Sum_probs=36.3
Q ss_pred cccccCCC--C-ceeecCCcccc-cchhhhcccCCcccccccccCCCceeecCCch
Q 000672 536 YCVWCGRS--S-DLVSCKSCKTL-FCTTCVKRNISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 536 ~C~~C~~g--g-~l~~Cd~C~~~-fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
-|.+|+-. - -||.||.|..+ ||..||++.+... +.+.|+|..|.-.
T Consensus 217 ~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~ei------P~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 217 KCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSES------PVNEWYCTNCSLL 266 (1134)
T ss_pred cceeeccCChHHhheeecccccceeeccccCcccccc------cccceecCcchhh
Confidence 49999843 3 46799999999 9999999876544 4458999999544
No 206
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=92.50 E-value=0.62 Score=60.92 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCC
Q 000672 1120 MVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKR 1199 (1360)
Q Consensus 1120 l~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~ 1199 (1360)
...+.+.|..+...+.++|||..+..++..+...|... .+.. +.+.|.. .|.++++.|.+.-+..
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~-----------~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~ 584 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRD-----------LRLM-LLVQGDQ---PRQRLLEKHKKRVDEG 584 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHh-----------cCCc-EEEeCCc---hHHHHHHHHHHHhccC
Confidence 34555555554445566888888888899999888741 1222 3445542 5778897776420000
Q ss_pred ceEEEeecccccccCCccC--CCEEEEEcCCC
Q 000672 1200 VKCTLISTRAGSLGINLHS--ANRVIIVDGSW 1229 (1360)
Q Consensus 1200 v~VlLISTkAGgeGLNL~~--An~VIi~D~~W 1229 (1360)
-.-+|+++....+|||+++ +..||+.-.|+
T Consensus 585 ~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 585 EGSVLFGLQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred CCeEEEEeccccccccCCCCceEEEEEEcCCC
Confidence 1125777789999999985 78899988776
No 207
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.38 E-value=1.6 Score=50.15 Aligned_cols=28 Identities=21% Similarity=0.049 Sum_probs=21.5
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
...+.+|.-+.|+|||..|-++...+..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3456789999999999888777665543
No 208
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.37 E-value=1.3 Score=44.17 Aligned_cols=26 Identities=23% Similarity=0.085 Sum_probs=20.0
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTA 776 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~l 776 (1360)
.+...++.-+.|.|||..+-.++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999997666655544
No 209
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=92.37 E-value=0.043 Score=70.95 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=44.5
Q ss_pred cccccCCCCceeecCC-cccccch-hhhcccCCcccccccccCCCceeecCC---chhHHHHHHHHH
Q 000672 536 YCVWCGRSSDLVSCKS-CKTLFCT-TCVKRNISEACLSDEVQASCWQCCCCS---PSLLKRLTSELG 597 (1360)
Q Consensus 536 ~C~~C~~gg~l~~Cd~-C~~~fc~-~Cl~~~~~~~~~~~~~~~~~W~C~~C~---p~~l~~L~~~~~ 597 (1360)
.|++|+.-|.++||+. ||..||. .||++-. +..-..++.|.|.-|- ..+...|..+++
T Consensus 430 rl~Ie~~det~l~yysT~pqly~ll~cLd~~~----~e~~L~d~i~~~~ee~~rqM~lT~~ltne~R 492 (1414)
T KOG1473|consen 430 RLRIEGMDETLLWYYSTCPQLYHLLRCLDRTY----VEMYLCDGIWERREEIIRQMGLTEELTNELR 492 (1414)
T ss_pred eeEEecCCCcEEEEecCcHHHHHHHHHhchHH----HHHhhccchhhhHHHHHHhccchhhhhhhhh
Confidence 3999999999999999 9999998 9976544 4434467899999994 335555555555
No 210
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.09 E-value=0.96 Score=60.21 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=45.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHH-HH-
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-NW- 799 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~-QW- 799 (1360)
...||-|.+-...+.+.+. .+...++-..+|+|||+.-+.-+.. .. ...+++|.+|+..+. |-
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~----------~~~~~~~eA~tGtGKT~ayllp~l~---~~--~~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFH----------DGPASFIEAQTGIGKTYGYLLPLLA---QS--DQRQIIVSVPTKILQDQIM 308 (820)
T ss_pred CccCHHHHHHHHHHHHHHh----------CCCcEEEECCCCCcHHHHHHHHHHH---hc--CCCcEEEEeCcHHHHHHHH
Confidence 4678999997777766542 3455777889999999765544322 11 135899999977544 43
Q ss_pred HHHHHH
Q 000672 800 KQEFMK 805 (1360)
Q Consensus 800 ~~Ei~k 805 (1360)
..++..
T Consensus 309 ~~~i~~ 314 (820)
T PRK07246 309 AEEVKA 314 (820)
T ss_pred HHHHHH
Confidence 454443
No 211
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.09 E-value=0.36 Score=56.86 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=27.4
Q ss_pred CEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCC
Q 000672 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQ 913 (1360)
Q Consensus 875 dlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiq 913 (1360)
.+||+|||+++-. .++-..+.+.-...+++|||-|-|
T Consensus 353 ~FiIIDEaQNLTp--heikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 353 SFIIIDEAQNLTP--HELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ceEEEehhhccCH--HHHHHHHHhccCCCEEEEcCCHHH
Confidence 4599999999843 233345566677789999999966
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.78 E-value=0.78 Score=45.30 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=29.7
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 799 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW 799 (1360)
+...+|.-.+|.|||..+..++..+.... ..++++.+......+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC----CCEEEECCEEccccC
Confidence 35678999999999988887766652221 256777766554443
No 213
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.49 E-value=0.083 Score=65.40 Aligned_cols=45 Identities=27% Similarity=0.634 Sum_probs=37.4
Q ss_pred ccccccCCCCceeecCCcccccchhhhcccCCcccccccccCCCceeecC
Q 000672 535 CYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 584 (1360)
Q Consensus 535 ~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C 584 (1360)
.-|+.|..||.++||+.||.+||..|.+..+.+. .....|.|-.|
T Consensus 48 ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~-----~~~~~~~~~~~ 92 (613)
T KOG4299|consen 48 TSCGICKSGGNLLCCDHCPASFHLECDKPPLSPD-----LKGSEINCSRC 92 (613)
T ss_pred hhcchhhhcCCccccccCccccchhccCcccCcc-----cccccccccCC
Confidence 4799999999999999999999999998887743 22356777777
No 214
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=90.73 E-value=0.12 Score=61.72 Aligned_cols=48 Identities=23% Similarity=0.654 Sum_probs=38.2
Q ss_pred cccccCCCC---ceeecCCcccccchhhhcccCCcccccccccCCCceeecCC
Q 000672 536 YCVWCGRSS---DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 585 (1360)
Q Consensus 536 ~C~~C~~gg---~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 585 (1360)
.|.+|...- -|+.||+|...||.-||.+++-+- ++-...-.|+|.-|+
T Consensus 546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~--Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRL--PKKNKNFGWQCSECD 596 (707)
T ss_pred eeeeeccchhhHHHhhcchhhceeeccccCCccccC--cccccCcceeecccc
Confidence 599998665 588999999999999999887654 333445679999994
No 215
>PRK08116 hypothetical protein; Validated
Probab=90.59 E-value=9.5 Score=44.16 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=32.8
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 802 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~E 802 (1360)
+.|.+|.-++|+|||..+.|++..+...+ .+++++.-..++......
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~----~~v~~~~~~~ll~~i~~~ 160 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG----VPVIFVNFPQLLNRIKST 160 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEHHHHHHHHHHH
Confidence 45799999999999999999888876542 356555544455444433
No 216
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=90.51 E-value=0.13 Score=57.79 Aligned_cols=50 Identities=20% Similarity=0.507 Sum_probs=37.7
Q ss_pred CCCCcccccccCCCCceeecCCcccccchhhhcccCCcccccccccCCCceeecCCchhHH
Q 000672 530 ADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLK 590 (1360)
Q Consensus 530 ~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~~l~ 590 (1360)
-|... .|++|..-=..-|=..|...||.-||.+.+|.. =+|++|...|..
T Consensus 22 LDs~l-rC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q----------p~CP~Cr~~~~e 71 (391)
T COG5432 22 LDSML-RCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ----------PFCPVCREDPCE 71 (391)
T ss_pred chhHH-HhhhhhheeecceecccccchhHHHHHHHhcCC----------CCCccccccHHh
Confidence 34444 788887766666666799999999999998866 369999765543
No 217
>CHL00181 cbbX CbbX; Provisional
Probab=90.33 E-value=2 Score=50.23 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=29.8
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL 796 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl 796 (1360)
.+.+.+|.-+.|+|||..|-++...+...+....++++.|.+..++
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 3455799999999999999888776654443333344444434343
No 218
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=89.93 E-value=1.5 Score=51.14 Aligned_cols=41 Identities=20% Similarity=0.078 Sum_probs=27.8
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEe
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 791 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~ 791 (1360)
.+.+.+|.-+.|+|||..|.++...+...+....++++.|.
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 45578899999999999888877766554433223444444
No 219
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=89.67 E-value=0.16 Score=63.04 Aligned_cols=71 Identities=24% Similarity=0.614 Sum_probs=48.7
Q ss_pred eeeccCccccccc-----cccc-cccccccCcchhhhhhcCcccCCCCCcccccccCC---CCceeecCCcccccchhhh
Q 000672 491 FYCTACNNVAIEV-----HPHP-ILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGR---SSDLVSCKSCKTLFCTTCV 561 (1360)
Q Consensus 491 ~~C~~Cg~~~~~~-----~~HP-~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~---gg~l~~Cd~C~~~fc~~Cl 561 (1360)
..|-.||...... ..|- ++.++-|..| -.|-.|+. .+.++.|+.|--+||-.|+
T Consensus 36 ~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~c-----------------rvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~ 98 (694)
T KOG4443|consen 36 LACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSC-----------------RVCEACGTTGDPKKFLLCKRCDVSYHCYCQ 98 (694)
T ss_pred hhhhhhcccCCcchhhHHHhHHHhcCCcccCCc-----------------eeeeeccccCCccccccccccccccccccc
Confidence 4566666553321 1233 3456677777 36777774 4468899999999999999
Q ss_pred cccCCcccccccccCCCceeecC
Q 000672 562 KRNISEACLSDEVQASCWQCCCC 584 (1360)
Q Consensus 562 ~~~~~~~~~~~~~~~~~W~C~~C 584 (1360)
+|... ....++|.|.-|
T Consensus 99 ~P~~~------~v~sg~~~ckk~ 115 (694)
T KOG4443|consen 99 KPPND------KVPSGPWLCKKC 115 (694)
T ss_pred CCccc------cccCcccccHHH
Confidence 87754 447789998776
No 220
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.49 E-value=0.72 Score=55.81 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=35.4
Q ss_pred hcCCCCEEEEeCCcccCCcchHHHHHHhhc--------ccceEEEEeCCCCCCchhhHHhhhhhhc
Q 000672 870 LQDGPDILVCDEAHMIKNTRADTTQALKQV--------KCQRRIALTGSPLQNNLMEYYCMVDFVR 927 (1360)
Q Consensus 870 l~~~fdlVIlDEAH~IKN~~Sk~skal~~L--------ka~~RllLTGTPiqNnl~EL~sLL~fL~ 927 (1360)
+...|.++|+||||. .|..+..+..+ .--+.+++|+|-.-..+..||.-.-++.
T Consensus 156 ~l~~y~viiLDeahE----RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~ 217 (699)
T KOG0925|consen 156 LLGRYGVIILDEAHE----RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLA 217 (699)
T ss_pred ccccccEEEechhhh----hhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeee
Confidence 345899999999994 44444444333 3346799999987766666665444443
No 221
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.43 E-value=2.4 Score=46.99 Aligned_cols=28 Identities=21% Similarity=-0.012 Sum_probs=22.2
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
..+...+|.-+.|.|||..+.++.....
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466788999999999988888776553
No 222
>PRK06526 transposase; Provisional
Probab=89.11 E-value=1.5 Score=50.32 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=24.3
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
.+.+.+|.-..|.|||..+.++...+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 46789999999999999999988776543
No 223
>PHA02533 17 large terminase protein; Provisional
Probab=88.74 E-value=3.7 Score=52.05 Aligned_cols=55 Identities=18% Similarity=0.077 Sum_probs=36.3
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 792 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P 792 (1360)
..|.|+|+.-+..|.. ++-.++.-.=..|||..+.+++....... +...+++++|
T Consensus 58 f~L~p~Q~~i~~~~~~--------------~R~~ii~~aRq~GKStl~a~~al~~a~~~--~~~~v~i~A~ 112 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK--------------NRFNACNLSRQLGKTTVVAIFLLHYVCFN--KDKNVGILAH 112 (534)
T ss_pred cCCcHHHHHHHHHHhc--------------CeEEEEEEcCcCChHHHHHHHHHHHHHhC--CCCEEEEEeC
Confidence 5688999998887631 22336666778999988776554433222 1247888888
No 224
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=87.83 E-value=4.3 Score=43.49 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=34.9
Q ss_pred eEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHHHh
Q 000672 755 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 806 (1360)
Q Consensus 755 gILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~k~ 806 (1360)
.+++-+.|.|||..++.++......+ .++++|.......+....+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g----~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG----EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC----CcEEEEECCCCHHHHHHHHHHc
Confidence 46788999999999998888766432 4788888765555555555444
No 225
>PF13245 AAA_19: Part of AAA domain
Probab=87.83 E-value=1.6 Score=40.64 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=34.0
Q ss_pred cceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHH
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 798 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~Q 798 (1360)
.-.++--..|.|||.+++..+..+........+++||++|..-..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 3455688999999999999888887542222568999999765443
No 226
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=87.22 E-value=1.6 Score=50.57 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 727 HQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 727 hQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
+|...|+-+...+.. ......++--+.|+|||-++.+|...+.
T Consensus 40 gQe~vV~~L~~a~~~--------~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLR--------RILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred chHHHHHHHHHHHhh--------cCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 677777766554421 3456788999999999999999988874
No 227
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=86.60 E-value=1.8 Score=51.50 Aligned_cols=47 Identities=13% Similarity=0.081 Sum_probs=35.7
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
.++|+|....+.+... +..++..++.-+.|.|||..|.+|...++..
T Consensus 3 ~~yPWl~~~~~~~~~~----------~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR----------GRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHC----------CCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 3589998877766431 2445677889999999999999998887643
No 228
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=86.56 E-value=15 Score=41.98 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=16.9
Q ss_pred ceEEEeCCCchHHHHHHHHHHH
Q 000672 754 GCILAHTMGLGKTFQVIAFLYT 775 (1360)
Q Consensus 754 GgILADeMGLGKTlqaIAlI~~ 775 (1360)
-.+|.-+.|+|||..+-.++..
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4678999999999776665443
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.03 E-value=23 Score=43.26 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=43.1
Q ss_pred CCCEEEEeCCcccCCcchHH---HHHHhhcc-cceEEEEeCCCCCCchhhHHhhhhhhccC-----------CCCChHHH
Q 000672 873 GPDILVCDEAHMIKNTRADT---TQALKQVK-CQRRIALTGSPLQNNLMEYYCMVDFVREG-----------FLGSSHEF 937 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~Sk~---skal~~Lk-a~~RllLTGTPiqNnl~EL~sLL~fL~p~-----------~lgs~~eF 937 (1360)
++|+||+|-+=+.-+....+ .+.+.... ....++|+||--.+.+.++...++.+.+. .+|..-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLDET~k~G~iLni 399 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKI 399 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEcccCCCCccHHHHH
Confidence 58899999886543332222 22222222 22346678887777777777766665443 23444455
Q ss_pred HhhccCCcccC
Q 000672 938 RNRFQNPIENG 948 (1360)
Q Consensus 938 ~~~f~~pi~~g 948 (1360)
...+..|+..-
T Consensus 400 ~~~~~lPIsyi 410 (436)
T PRK11889 400 PAVSSAPIVLM 410 (436)
T ss_pred HHHHCcCEEEE
Confidence 66666776543
No 230
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=86.02 E-value=0.34 Score=54.02 Aligned_cols=46 Identities=33% Similarity=0.792 Sum_probs=34.4
Q ss_pred CCCcccccccC--CCCceeecCC--ccc-ccchhhhcccCCcccccccccCCCceeecCC
Q 000672 531 DCSECYCVWCG--RSSDLVSCKS--CKT-LFCTTCVKRNISEACLSDEVQASCWQCCCCS 585 (1360)
Q Consensus 531 d~~~~~C~~C~--~gg~l~~Cd~--C~~-~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 585 (1360)
.|..-||- |. .=|+.+-||+ |+| =||..|+. -. ..|.|.|+|+-|.
T Consensus 218 e~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVG----Lk----~pPKG~WYC~eCk 268 (271)
T COG5034 218 EGEELYCF-CQQVSYGQMVACDNANCKREWFHLECVG----LK----EPPKGKWYCPECK 268 (271)
T ss_pred cCceeEEE-ecccccccceecCCCCCchhheeccccc----cC----CCCCCcEeCHHhH
Confidence 45555663 54 3489999999 998 79999964 33 4567999999994
No 231
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.79 E-value=0.51 Score=58.42 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=30.0
Q ss_pred eCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHHHHH
Q 000672 759 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQE 802 (1360)
Q Consensus 759 DeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW~~E 802 (1360)
..+|.|||+++.++|.+.+..+ -+..|..|- ++++..-..-
T Consensus 4 matgsgkt~~ma~lil~~y~kg---yr~flffvnq~nilekt~~n 45 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKG---YRNFLFFVNQANILEKTKLN 45 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhc---hhhEEEEecchhHHHHHHhh
Confidence 4689999999999998887654 457777775 6666654433
No 232
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.52 E-value=11 Score=46.55 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=37.2
Q ss_pred CCCEEEEeCCcccCCcchH---HHHHHhhc--ccceEEEEeCCCCCCchhhHHhhhhhhccC
Q 000672 873 GPDILVCDEAHMIKNTRAD---TTQALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREG 929 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~Sk---~skal~~L--ka~~RllLTGTPiqNnl~EL~sLL~fL~p~ 929 (1360)
.+|+||||-+-+....... +...+... .....++|++|+=.+.+.+++..+..+.+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~ 360 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLD 360 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCC
Confidence 6899999998765432222 22222211 235579999999888888888888776653
No 233
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=85.09 E-value=12 Score=41.75 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=37.1
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHh-cccCCCceEEEechhhHHHHHHHHHHh
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRS-VNLGLRTALIVTPVNVLHNWKQEFMKW 806 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~-~~~~~k~~LIV~P~sLl~QW~~Ei~k~ 806 (1360)
.+.-.+++-+.|.|||+.++-+++..+.. +. +++.|.-..-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----KVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEESSS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----cEEEEEecCCHHHHHHHHHHc
Confidence 35567889999999999999998877665 43 788888555556666666554
No 234
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=84.89 E-value=12 Score=46.35 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=92.9
Q ss_pred ChhHHHHHH-HHHhhh--cCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHh
Q 000672 1117 SGKMVLLLD-ILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 1193 (1360)
Q Consensus 1117 S~Kl~~L~e-iL~~~~--~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn 1193 (1360)
..++....+ +|..+. ....++|||..+--..-.|..+|++ .++.|+.++--++..+-.++-..|.
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~------------~~~sF~~i~EYts~~~isRAR~~F~ 347 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK------------ENISFVQISEYTSNSDISRARSQFF 347 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHh------------cCCeEEEecccCCHHHHHHHHHHHH
Confidence 346666655 444444 3356899999887777778888885 7899999999999999999999999
Q ss_pred CCCCCCceEEEeeccccc-ccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCC----CCcEEEEEEecC
Q 000672 1194 EPLNKRVKCTLISTRAGS-LGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQ----TKPVFAYRLMAH 1258 (1360)
Q Consensus 1194 ~~~n~~v~VlLISTkAGg-eGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQ----kK~V~VyrLva~ 1258 (1360)
. ++.+++|+|-++-= .=..+.++.+||+|.||-+|.-+...+.-+..-.+ .....|.-|.++
T Consensus 348 ~---G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 348 H---GRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred c---CCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 6 56778888876532 23456789999999999999999888866554443 233444444443
No 235
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=84.84 E-value=0.54 Score=46.60 Aligned_cols=48 Identities=23% Similarity=0.694 Sum_probs=33.8
Q ss_pred cccCCCCceeecCCcccccchhhhcccCCcccccccccCCCceeecCCc
Q 000672 538 VWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 586 (1360)
Q Consensus 538 ~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p 586 (1360)
++|..-+..--|..|...||..||..-.|.. +.++.++..|.||.|.-
T Consensus 22 ~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~-~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 22 TICTGHWKNSSCRGCRGKFCGGCLRNRYGEN-VEEVLEDPNWKCPKCRG 69 (105)
T ss_pred eEcCCCCCCCCCccCcceehHhHHHHHHhhh-HHHHhcCCceECCCCCC
Confidence 4443333444455569999999999888864 33466788999999943
No 236
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=84.75 E-value=17 Score=43.54 Aligned_cols=56 Identities=16% Similarity=0.190 Sum_probs=37.7
Q ss_pred cccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 714 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 714 v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
-++|+.+.. |..|++.+...+.... .+..+.+.++.-+.|.|||..+-+++..+..
T Consensus 11 ~~~p~~l~g--Re~e~~~l~~~l~~~~-------~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 11 DYVPDRIVH--RDEQIEELAKALRPIL-------RGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCCCCCCCC--cHHHHHHHHHHHHHHH-------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456665543 6777777765554332 1234567899999999999888888776543
No 237
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.58 E-value=5.3 Score=49.78 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=21.1
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
++..|+.-+.|.|||..|..++..+.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44579999999999988888877653
No 238
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=84.52 E-value=4.2 Score=48.26 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=39.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 721 ~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
...++|+|....+.+...+. .+.-++..++.-..|+||+..|.+|+..++-.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~-------~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~ 53 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALD-------AGRLGHGLLICGPEGLGKRAVALALAEHVLAS 53 (319)
T ss_pred CccccccHHHHHHHHHHHHH-------cCCcceeEeeECCCCCCHHHHHHHHHHHHhCC
Confidence 45689999998877654332 23445678899999999999999998887654
No 239
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=84.38 E-value=1.9 Score=54.92 Aligned_cols=174 Identities=16% Similarity=0.145 Sum_probs=99.8
Q ss_pred cCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-
Q 000672 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN- 794 (1360)
Q Consensus 716 vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s- 794 (1360)
.|........|||++-...|-. ..-....+.-..-+|||..++.++.+.+.. ...++|+|.|.-
T Consensus 9 ~pG~w~~~~~Py~~eimd~~~~------------~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~---~P~~~l~v~Pt~~ 73 (557)
T PF05876_consen 9 EPGPWRTDRTPYLREIMDALSD------------PSVREVVVMKSAQVGKTELLLNWIGYSIDQ---DPGPMLYVQPTDD 73 (557)
T ss_pred CCCCCCCCCChhHHHHHHhcCC------------cCccEEEEEEcchhhHhHHHHhhceEEEEe---CCCCEEEEEEcHH
Confidence 3455567789999998776621 234678888899999999777766555433 236999999965
Q ss_pred hHHHHHH-HHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCC
Q 000672 795 VLHNWKQ-EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDG 873 (1360)
Q Consensus 795 Ll~QW~~-Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~ 873 (1360)
....|.. .|...+... ..++-.+.....+........+....+.+.+++..+-.++ -...
T Consensus 74 ~a~~~~~~rl~Pmi~~s-p~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~~l------------------~s~~ 134 (557)
T PF05876_consen 74 AAKDFSKERLDPMIRAS-PVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPSNL------------------RSRP 134 (557)
T ss_pred HHHHHHHHHHHHHHHhC-HHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCCccc------------------ccCC
Confidence 6667764 344332110 0011011010001111111112222334555555443221 1236
Q ss_pred CCEEEEeCCccc----CCcchHHHHHHhhc---ccceEEEEeCCCCCCchhhHHhhh
Q 000672 874 PDILVCDEAHMI----KNTRADTTQALKQV---KCQRRIALTGSPLQNNLMEYYCMV 923 (1360)
Q Consensus 874 fdlVIlDEAH~I----KN~~Sk~skal~~L---ka~~RllLTGTPiqNnl~EL~sLL 923 (1360)
.++|++||...+ ++.......+..+. ...+++++..||.......++.++
T Consensus 135 ~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 135 ARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred cCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 789999999887 34445565555544 466889999999877555555443
No 240
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=84.13 E-value=9.8 Score=49.77 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=21.8
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
.++..||.-.-|+|||..+..|...+.
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345668999999999988888877764
No 241
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=84.05 E-value=4.2 Score=42.48 Aligned_cols=52 Identities=25% Similarity=0.377 Sum_probs=36.2
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccccccCCccC--CCEEEEEcCCC
Q 000672 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHS--ANRVIIVDGSW 1229 (1360)
Q Consensus 1174 ~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeGLNL~~--An~VIi~D~~W 1229 (1360)
+.+-|. ...+...+++.|...... .+|+++...++|||+++ +..||+.-.|+
T Consensus 26 i~~e~~-~~~~~~~~l~~f~~~~~~---~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 26 LLVQGE-DGKETGKLLEKYVEACEN---AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEeCC-ChhHHHHHHHHHHHcCCC---EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344443 334578899999874221 35777767999999995 67888888665
No 242
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=83.78 E-value=6.3 Score=52.12 Aligned_cols=59 Identities=14% Similarity=0.011 Sum_probs=42.8
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 797 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~ 797 (1360)
..|-+-|+.++..+.. ...-.+|-...|.|||.++-+++..+... ..++++++|.....
T Consensus 351 ~~Ls~~Q~~Av~~i~~-------------s~~~~il~G~aGTGKTtll~~i~~~~~~~----g~~V~~~ApTg~Aa 409 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG-------------SGDIAVVVGRAGTGKSTMLKAAREAWEAA----GYRVIGAALSGKAA 409 (744)
T ss_pred CCCCHHHHHHHHHHhc-------------CCCEEEEEecCCCCHHHHHHHHHHHHHhC----CCeEEEEeCcHHHH
Confidence 4688999999987641 23457899999999998877766554332 24788889987654
No 243
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=83.69 E-value=4.4 Score=54.46 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=70.2
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHH-----HHHHHHHHhCCCCCCCeEEEEecCcch
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH-----NWKQEFMKWRPSELKPLRVFMLEDVSR 824 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~-----QW~~Ei~k~~p~~~~~l~V~~~~g~~~ 824 (1360)
....+.+++...|+|||+.| -++.+. +....++.-++|...+. -|..-|.+-. .+.+..+.|...
T Consensus 1157 ~~nd~v~vga~~gsgkt~~a--e~a~l~---~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~-----G~~~~~l~ge~s 1226 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACA--ELALLR---PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL-----GLRIVKLTGETS 1226 (1674)
T ss_pred cccceEEEecCCCCchhHHH--HHHhcC---CccceEEEEecchHHHHHHHHHHHHHhhcccc-----CceEEecCCccc
Confidence 45678999999999999554 333332 33456889999977553 3777776552 255665555432
Q ss_pred hHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCcccCCcc
Q 000672 825 DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTR 889 (1360)
Q Consensus 825 ~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~IKN~~ 889 (1360)
... +....+.|+|.|+..+..+. .....++.|+||.|.+....
T Consensus 1227 ~~l-----kl~~~~~vii~tpe~~d~lq-----------------~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1227 LDL-----KLLQKGQVIISTPEQWDLLQ-----------------SIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred cch-----HHhhhcceEEechhHHHHHh-----------------hhhhcceEeeehhhhhcccC
Confidence 221 12356789999998876431 11256889999999997543
No 244
>PRK14974 cell division protein FtsY; Provisional
Probab=83.20 E-value=22 Score=42.58 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=30.3
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEech----hhHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV----NVLHNWKQEF 803 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~----sLl~QW~~Ei 803 (1360)
+.-.++.-..|.|||.++..++..+... + .+++++... ..+.||..-.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~---g-~~V~li~~Dt~R~~a~eqL~~~a 191 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN---G-FSVVIAAGDTFRAGAIEQLEEHA 191 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---C-CeEEEecCCcCcHHHHHHHHHHH
Confidence 3456778899999998877776655332 1 356666542 3456665443
No 245
>PLN03025 replication factor C subunit; Provisional
Probab=83.19 E-value=7.1 Score=46.20 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=21.6
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
....||.-+.|.|||-.+.+++..+.
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999988888877663
No 246
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=83.15 E-value=13 Score=49.29 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=32.9
Q ss_pred ccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceE-EEeCCCchHHHHHHHHHHHHH
Q 000672 715 RIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCI-LAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 715 ~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgI-LADeMGLGKTlqaIAlI~~ll 777 (1360)
++|..|. =|.-|...|..++...+. +..+.++| |.-.+|+|||.++-.++..+.
T Consensus 752 YVPD~LP--hREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 752 VVPKYLP--CREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred cCCCcCC--ChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3454432 355666666555443321 12334554 899999999999988876653
No 247
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=83.08 E-value=4 Score=42.65 Aligned_cols=54 Identities=24% Similarity=0.428 Sum_probs=34.8
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccc--ccccCCccC--CCEEEEEcCCC
Q 000672 1174 YRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRA--GSLGINLHS--ANRVIIVDGSW 1229 (1360)
Q Consensus 1174 ~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkA--GgeGLNL~~--An~VIi~D~~W 1229 (1360)
+.+.+..+ .+...+++.|+...+.. ..+|+++.. .+|||||++ +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~-g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEAR-GALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCC-CEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34444432 34578999998743311 124555544 799999995 67888888775
No 248
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=82.71 E-value=0.58 Score=48.80 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=22.0
Q ss_pred ccchhhhcccCCcccccccccCCCceeecCCch
Q 000672 555 LFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 555 ~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
.||..||+|++. ..+.+.|+|+.|..+
T Consensus 1 g~H~~CL~Ppl~------~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLK------EVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCC------CCCCCCcCCCCCcCC
Confidence 489999999884 447799999999544
No 249
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=82.18 E-value=9.9 Score=45.79 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=23.7
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
..++..++.-+.|+|||..+..++..++.
T Consensus 43 rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 43 KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 34556888999999999999888887755
No 250
>PRK08727 hypothetical protein; Validated
Probab=82.08 E-value=12 Score=42.19 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=20.8
Q ss_pred cceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
...+|.-..|+|||--+.|+...+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999888887766543
No 251
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=81.91 E-value=2.9 Score=48.41 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhh-HHHHHHH
Q 000672 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV-LHNWKQE 802 (1360)
Q Consensus 724 LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sL-l~QW~~E 802 (1360)
|-+-|..+|.+. .+..++-...|+|||.+++.-+..++..+......+|+|+++.. ...-...
T Consensus 1 l~~eQ~~~i~~~----------------~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~r 64 (315)
T PF00580_consen 1 LTDEQRRIIRST----------------EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRER 64 (315)
T ss_dssp S-HHHHHHHHS-----------------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHhCC----------------CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHH
Confidence 345677777652 34556666799999999999888887776555678999998764 3334444
Q ss_pred HHH
Q 000672 803 FMK 805 (1360)
Q Consensus 803 i~k 805 (1360)
+..
T Consensus 65 i~~ 67 (315)
T PF00580_consen 65 IRE 67 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 252
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=81.83 E-value=9.7 Score=49.34 Aligned_cols=28 Identities=18% Similarity=0.062 Sum_probs=22.2
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
.++..|+.-+.|.|||..+-.|...+..
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3445689999999999988888777654
No 253
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=81.70 E-value=8.9 Score=51.16 Aligned_cols=28 Identities=14% Similarity=0.072 Sum_probs=22.5
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
..+..||.-..|+|||..+..|...++.
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3455789999999999988888877653
No 254
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=81.24 E-value=13 Score=46.41 Aligned_cols=50 Identities=10% Similarity=-0.079 Sum_probs=30.4
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEF 803 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei 803 (1360)
..+.+|.-++|+|||-.+-|+...+..... ..+++.|.+..++......+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~--~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFS--DLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCC--CCeEEEEEHHHHHHHHHHHH
Confidence 356889999999999877776665543221 23555555554444444333
No 255
>PRK08084 DNA replication initiation factor; Provisional
Probab=81.16 E-value=12 Score=42.44 Aligned_cols=26 Identities=15% Similarity=-0.049 Sum_probs=20.0
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
+...+|.-+.|+|||-.+.++...+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999977766665543
No 256
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=81.15 E-value=20 Score=38.18 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=23.5
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHhcc
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVN 781 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~ 781 (1360)
..++..|+..+.|.||+-.|.+|+..++....
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 44556788999999999999999988865543
No 257
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=80.95 E-value=7.8 Score=45.75 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=21.3
Q ss_pred cceEEEeCCCchHHHHHHHHHHHHH
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
.+.+|.-+.|+|||..+.++...+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999988877664
No 258
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=80.81 E-value=9.6 Score=47.43 Aligned_cols=27 Identities=22% Similarity=0.119 Sum_probs=21.7
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
....+|.-..|+|||..+-++...+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~ 174 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILE 174 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356889999999999888887766654
No 259
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.53 E-value=0.59 Score=57.11 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=45.1
Q ss_pred CCCCcccccccCCCCceeecCCcccccchhhhcccCCcccccccccCCCceeecCCchhHHHH
Q 000672 530 ADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRL 592 (1360)
Q Consensus 530 ~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~~l~~L 592 (1360)
..+.+.||.-|.-.|..+.|+.|-|+||..|+.+-.-... ...+|.|+.|.+.+-+.+
T Consensus 56 ~~N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~-----~s~p~~~p~p~s~k~~~~ 113 (588)
T KOG3612|consen 56 SSNIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRN-----YSVPSDKPQPYSFKVNEL 113 (588)
T ss_pred ccCCCcccccccCCcceeeeehhhccccccccCcchhhcc-----ccccccCCcccccCCCcc
Confidence 3566779999999999999999999999999875543332 357899999976653333
No 260
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=80.44 E-value=13 Score=50.45 Aligned_cols=132 Identities=16% Similarity=0.143 Sum_probs=74.1
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQE 802 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~E 802 (1360)
.|-+-|+++|..+.. ...-++|--..|+|||.+.-+++.. +... ...+++++|+.....=..+
T Consensus 346 ~Ls~eQr~Av~~il~-------------s~~v~vv~G~AGTGKTT~l~~~~~~-~e~~---G~~V~~~ApTGkAA~~L~e 408 (988)
T PRK13889 346 VLSGEQADALAHVTD-------------GRDLGVVVGYAGTGKSAMLGVAREA-WEAA---GYEVRGAALSGIAAENLEG 408 (988)
T ss_pred CCCHHHHHHHHHHhc-------------CCCeEEEEeCCCCCHHHHHHHHHHH-HHHc---CCeEEEecCcHHHHHHHhh
Confidence 488999999987641 2234678889999999865444333 3321 2468888898765422211
Q ss_pred HHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCC
Q 000672 803 FMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEA 882 (1360)
Q Consensus 803 i~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEA 882 (1360)
- . + +. ...+..|... + .. + .......++||||||
T Consensus 409 ~---t--G---i~------------a~TI~sll~~-------~---~~---~-------------~~~l~~~~vlIVDEA 442 (988)
T PRK13889 409 G---S--G---IA------------SRTIASLEHG-------W---GQ---G-------------RDLLTSRDVLVIDEA 442 (988)
T ss_pred c---c--C---cc------------hhhHHHHHhh-------h---cc---c-------------ccccccCcEEEEECc
Confidence 0 0 0 00 0111111000 0 00 0 000125679999999
Q ss_pred cccCCcchHHHHHHhhc-ccceEEEEeCCCCCCchhhH
Q 000672 883 HMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEY 919 (1360)
Q Consensus 883 H~IKN~~Sk~skal~~L-ka~~RllLTGTPiqNnl~EL 919 (1360)
-.+... ...+.+... ....+++|.|=|-|-.+.+-
T Consensus 443 SMv~~~--~m~~LL~~a~~~garvVLVGD~~QLpsV~a 478 (988)
T PRK13889 443 GMVGTR--QLERVLSHAADAGAKVVLVGDPQQLQAIEA 478 (988)
T ss_pred ccCCHH--HHHHHHHhhhhCCCEEEEECCHHHcCCCCC
Confidence 988432 344444433 56789999999987655443
No 261
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=80.36 E-value=0.88 Score=57.25 Aligned_cols=45 Identities=24% Similarity=0.669 Sum_probs=34.8
Q ss_pred CcccccccCC-----CCceeecCCcccccchhhhcccCCcccccccccCCCceeecCC
Q 000672 533 SECYCVWCGR-----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 585 (1360)
Q Consensus 533 ~~~~C~~C~~-----gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 585 (1360)
++-.|-+|.- +.+++-||.|.-|-|+.|-..+ ..+.++|.|--|.
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIl--------e~p~gpWlCr~Ca 319 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGIL--------EVPEGPWLCRTCA 319 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhcee--------ecCCCCeeehhcc
Confidence 3446777764 4799999999999999995433 3456999999994
No 262
>PRK08181 transposase; Validated
Probab=80.27 E-value=15 Score=42.52 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.2
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
.+.+.+|.-+.|.|||-.+.|+...+...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999888776543
No 263
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.11 E-value=9.4 Score=49.19 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=22.6
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
.++..||.-..|+|||..+..|...+..
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456688999999999988888877753
No 264
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=80.08 E-value=8.9 Score=38.92 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHH----HHHH
Q 000672 49 LTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQAL-----HGDDLEAAVEDEMTVYKEQW----EAAL 119 (1360)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~~~ 119 (1360)
+|.|+.+.++++|++-=....+.--.+=++.+++++.+|+..+.+.. +=++|+.++.+.+..+...- ...+
T Consensus 19 ~~~ek~~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev 98 (118)
T TIGR01837 19 RVQEEGSKFFNRLVKEGELAEKRGQKRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEI 98 (118)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 68899999999999864444444444556788888888877666553 33789999999998887765 3778
Q ss_pred hhHHhHHHHHHHhhhc
Q 000672 120 DELETESAHLLEQLDG 135 (1360)
Q Consensus 120 ~~~~~~~~~~~~~~~~ 135 (1360)
++|+..++.|-.+|+.
T Consensus 99 ~~L~~RI~~Le~~l~~ 114 (118)
T TIGR01837 99 EALSAKIEQLAVQVEE 114 (118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777654
No 265
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=80.04 E-value=0.83 Score=56.66 Aligned_cols=61 Identities=30% Similarity=0.566 Sum_probs=40.9
Q ss_pred CCCCcccccccCCCCceeecCC--------cccccchhhhcccCCccc----------ccccccCCCceeecCCchhHH
Q 000672 530 ADCSECYCVWCGRSSDLVSCKS--------CKTLFCTTCVKRNISEAC----------LSDEVQASCWQCCCCSPSLLK 590 (1360)
Q Consensus 530 ~d~~~~~C~~C~~gg~l~~Cd~--------C~~~fc~~Cl~~~~~~~~----------~~~~~~~~~W~C~~C~p~~l~ 590 (1360)
..-..++|.+|.+||.+++|+. |+.++|..|+.+...... +..+...-.|-|++|.+..+.
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~~~~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~~~ 163 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPAQLEKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPLLP 163 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCccCcccccCCcceeeeccccceeEEeEEcCcccccccceecCcccc
Confidence 3444569999999999999993 888888888876222222 222223345779999766444
No 266
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=79.82 E-value=4.4 Score=48.47 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=36.8
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
.++|||...-+.+...+ ..+..++..+++-+-|+||+..|.+|..+++-.
T Consensus 2 ~~yPWl~~~~~~l~~~~-------~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSY-------QAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHH-------HcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 36788888776664432 223446677899999999999999998887653
No 267
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=79.79 E-value=1.6 Score=46.85 Aligned_cols=42 Identities=14% Similarity=0.362 Sum_probs=25.7
Q ss_pred hhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCcccC
Q 000672 835 RAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIK 886 (1360)
Q Consensus 835 ~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~IK 886 (1360)
....+|+|++|..+-.. .....+. .+...-.+||+||||+|-
T Consensus 117 ~~~adivi~~y~yl~~~---------~~~~~~~-~~~~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDP---------SIRKSLF-GIDLKDNIVIFDEAHNLE 158 (174)
T ss_dssp GGG-SEEEEETHHHHSH---------HHHHHHC-T--CCCEEEEETTGGGCG
T ss_pred cccCCEEEeCHHHHhhH---------HHHhhhc-cccccCcEEEEecccchH
Confidence 35679999999876531 1111111 233466789999999984
No 268
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.36 E-value=15 Score=47.18 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=21.8
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
++..|+.-..|+|||..|.+|+..+..
T Consensus 35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 35 NHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 444689999999999998888877653
No 269
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=79.19 E-value=10 Score=48.94 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=24.1
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
...+..||.-..|+|||..|..+...+...
T Consensus 44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 44 RIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 345678999999999999998888776543
No 270
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=79.14 E-value=14 Score=40.19 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=23.8
Q ss_pred EEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEech
Q 000672 756 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 793 (1360)
Q Consensus 756 ILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~ 793 (1360)
++.-+|+.|||...|..+..+... .++++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~----~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIA----GKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT----T-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhC----CCeEEEEEec
Confidence 456799999998888777655332 2477777775
No 271
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=79.13 E-value=11 Score=46.02 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=22.0
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
....+|.-..|+|||..+-++...+...
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3457899999999998888877766543
No 272
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.05 E-value=14 Score=49.35 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=20.9
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
++..||.-+.|.|||..+-+|+..+.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 34458999999999988888877764
No 273
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=78.97 E-value=9.3 Score=46.21 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHH
Q 000672 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 797 (1360)
Q Consensus 724 LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~ 797 (1360)
|-+-|+.++.++++.+.. ..+...++--.-|.|||...=+++..+.. ..+.+++++|..+..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~--------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~----~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIEN--------EEGLNFFVTGPAGTGKSFLIKAIIDYLRS----RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCHHHHHHHHHHHHHHHc--------cCCcEEEEEcCCCCChhHHHHHHHHHhcc----ccceEEEecchHHHH
Confidence 667799998888765432 45677888899999999877666655432 235899999987655
No 274
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=78.95 E-value=20 Score=43.45 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=26.0
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHhc
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 780 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~~ 780 (1360)
..++..|+.-..|+|||..|.+|...++...
T Consensus 39 rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 39 RLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 4466788999999999999999999887543
No 275
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=78.94 E-value=0.79 Score=63.46 Aligned_cols=54 Identities=22% Similarity=0.618 Sum_probs=41.3
Q ss_pred CCCCCcccccccCCCC---ceeecCCcccccchhhhcccCCcccccccccCCCceeecCCchh
Q 000672 529 DADCSECYCVWCGRSS---DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 588 (1360)
Q Consensus 529 d~d~~~~~C~~C~~gg---~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~~ 588 (1360)
+..-..-.|.+|...+ .++.||.|-.+||..|+++-+... +.+.|.|+-|.+..
T Consensus 1103 ~~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~------~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1103 DRSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSV------PPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccC------CcCCccCCccchhh
Confidence 3334444799997555 579999999999999998765433 45679999998875
No 276
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=78.73 E-value=12 Score=41.06 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=36.3
Q ss_pred hcCCCCEEEEeCCcccCCc----chHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhc
Q 000672 870 LQDGPDILVCDEAHMIKNT----RADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 927 (1360)
Q Consensus 870 l~~~fdlVIlDEAH~IKN~----~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~ 927 (1360)
....||+||+||.=.+-+. ...+...+..-...--++|||--.+..+.|+..++.-+.
T Consensus 112 ~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~ 173 (191)
T PRK05986 112 ADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMR 173 (191)
T ss_pred hCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheecc
Confidence 3468999999998655442 234444444434455799999866555555555554443
No 277
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=78.73 E-value=9.1 Score=42.24 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=32.7
Q ss_pred CCCCEEEEeCCcccCCcch---HHHHHHhhc-ccceEEEEeCCCCCCchhhHHhhhhhhcc
Q 000672 872 DGPDILVCDEAHMIKNTRA---DTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVDFVRE 928 (1360)
Q Consensus 872 ~~fdlVIlDEAH~IKN~~S---k~skal~~L-ka~~RllLTGTPiqNnl~EL~sLL~fL~p 928 (1360)
.++|+|++|-+.+.-+... .+.+.+..+ .....++|+||--+..+..+......+.+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~ 142 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGI 142 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSST
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccC
Confidence 4789999998876543322 222222233 45567888988766665555555444443
No 278
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=78.65 E-value=6 Score=51.54 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=50.6
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~ 800 (1360)
...||+|.+.+..+.+.+ ..+.++++=.++|+|||+..++.......... ++++|.++.. +..|-.
T Consensus 14 ~~~r~~Q~~~~~~v~~a~----------~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~---~~viist~t~~lq~q~~ 80 (654)
T COG1199 14 FEPRPEQREMAEAVAEAL----------KGGEGLLIEAPTGTGKTLAYLLPALAYAREEG---KKVIISTRTKALQEQLL 80 (654)
T ss_pred CCCCHHHHHHHHHHHHHH----------cCCCcEEEECCCCccHHHHHHHHHHHHHHHcC---CcEEEECCCHHHHHHHH
Confidence 467999999888776433 34566999999999999998887766654432 5777777765 555655
Q ss_pred HHHHH
Q 000672 801 QEFMK 805 (1360)
Q Consensus 801 ~Ei~k 805 (1360)
++...
T Consensus 81 ~~~~~ 85 (654)
T COG1199 81 EEDLP 85 (654)
T ss_pred Hhhcc
Confidence 55433
No 279
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=78.52 E-value=23 Score=36.30 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=23.2
Q ss_pred EEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec
Q 000672 756 ILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 792 (1360)
Q Consensus 756 ILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P 792 (1360)
++.-..|.|||..+..++...... .++++++..
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~----~~~v~~~~~ 35 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATK----GGKVVYVDI 35 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhc----CCEEEEEEC
Confidence 566778999999888887766442 246666654
No 280
>PRK11054 helD DNA helicase IV; Provisional
Probab=78.47 E-value=5.9 Score=51.83 Aligned_cols=83 Identities=11% Similarity=-0.006 Sum_probs=57.8
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 801 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~ 801 (1360)
..|-|-|..+|..- . ...++-...|+|||.++++-+.+++.........+|+++...-..+...
T Consensus 195 ~~L~~~Q~~av~~~---------------~-~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~ 258 (684)
T PRK11054 195 SPLNPSQARAVVNG---------------E-DSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMD 258 (684)
T ss_pred CCCCHHHHHHHhCC---------------C-CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHH
Confidence 46889999998522 2 3345555689999999999998888765444568999999887776555
Q ss_pred H-HHHhCCCCCCCeEEEEecCc
Q 000672 802 E-FMKWRPSELKPLRVFMLEDV 822 (1360)
Q Consensus 802 E-i~k~~p~~~~~l~V~~~~g~ 822 (1360)
+ +...++. ..+.+..+|+.
T Consensus 259 eRL~~~lg~--~~v~v~TFHSl 278 (684)
T PRK11054 259 ERIRERLGT--EDITARTFHAL 278 (684)
T ss_pred HHHHHhcCC--CCcEEEeHHHH
Confidence 4 6655542 33566666653
No 281
>PRK06835 DNA replication protein DnaC; Validated
Probab=78.36 E-value=27 Score=41.75 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=24.3
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
.+.+.+|.-++|+|||..+.|++..++..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34789999999999999999988887654
No 282
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=78.18 E-value=24 Score=41.49 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=25.1
Q ss_pred CCCCEEEEeCCccc-CCcchHHHHH---Hhhcc--cceEEEEeCCC
Q 000672 872 DGPDILVCDEAHMI-KNTRADTTQA---LKQVK--CQRRIALTGSP 911 (1360)
Q Consensus 872 ~~fdlVIlDEAH~I-KN~~Sk~ska---l~~Lk--a~~RllLTGTP 911 (1360)
.+..++|+||.|++ .+...+.-.. ++.|. -+--+++.||+
T Consensus 144 ~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 38899999999996 4444444333 34442 23336777886
No 283
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.84 E-value=12 Score=48.47 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=21.7
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
..+..||.-..|.|||..|.+++..+.
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 355679999999999988888776653
No 284
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=77.03 E-value=1.9 Score=57.73 Aligned_cols=49 Identities=20% Similarity=0.479 Sum_probs=37.6
Q ss_pred CCcccccccCCC-----CceeecCCcccccchhhhcccCCcccccccccCCCceeecCCchh
Q 000672 532 CSECYCVWCGRS-----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 588 (1360)
Q Consensus 532 ~~~~~C~~C~~g-----g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~~ 588 (1360)
..|..|.+|-+| ...+-||.|.-+.|+.|-.+. -.+++.|.|..|.-+|
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~--------~ipeg~WlCr~Cl~s~ 270 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIP--------FIPEGQWLCRRCLQSP 270 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccCCC--------CCCCCcEeehhhccCc
Confidence 344578888765 467899999999999996532 3456899999997665
No 285
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=76.90 E-value=6.1 Score=52.11 Aligned_cols=83 Identities=12% Similarity=0.038 Sum_probs=58.5
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHHH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 801 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~~ 801 (1360)
.|-|-|+++|.+ ..+.+++-...|+|||.+.++-+.+++.........+|+|+.+. ....-++
T Consensus 4 ~Ln~~Q~~av~~----------------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~ 67 (715)
T TIGR01075 4 GLNDKQREAVAA----------------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRH 67 (715)
T ss_pred ccCHHHHHHHcC----------------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHH
Confidence 578899998852 23456777788999999999999888875444456899999855 5566777
Q ss_pred HHHHhCCCCCCCeEEEEecC
Q 000672 802 EFMKWRPSELKPLRVFMLED 821 (1360)
Q Consensus 802 Ei~k~~p~~~~~l~V~~~~g 821 (1360)
.+.+.++.....+.+..+|+
T Consensus 68 Rl~~~~~~~~~~~~i~TfHs 87 (715)
T TIGR01075 68 RIGALLGTSARGMWIGTFHG 87 (715)
T ss_pred HHHHHhcccccCcEEEcHHH
Confidence 77777654333445555554
No 286
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=76.21 E-value=14 Score=43.35 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=24.4
Q ss_pred CCCEEEEeCCcccCCcc--hHHHHHHhhcccceEEEEeCCCC
Q 000672 873 GPDILVCDEAHMIKNTR--ADTTQALKQVKCQRRIALTGSPL 912 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~--Sk~skal~~Lka~~RllLTGTPi 912 (1360)
.+++||+||+|.+.... ......+.......++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 46789999999983322 11222233335566788888643
No 287
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=75.77 E-value=10 Score=43.55 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=40.3
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFM 804 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~ 804 (1360)
.+.|.+|--.+|.|||..++|+...+... ..+++++.=+.++.+++..+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~----g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA----GISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEEHHHHHHHHHHHHh
Confidence 57899999999999999999999888733 247777777778888777664
No 288
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.77 E-value=17 Score=46.04 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=21.5
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
.++..|+.-..|.|||..|-++...+.
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 344568999999999988888777764
No 289
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=75.18 E-value=18 Score=44.91 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=20.9
Q ss_pred cceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
...+|.-+.|+|||.-+-++...+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~ 156 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 46889999999999888777766544
No 290
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=74.91 E-value=1.7 Score=52.44 Aligned_cols=84 Identities=18% Similarity=0.448 Sum_probs=54.4
Q ss_pred ccccccCCCCceeeccCcccccc-ccccccc--cccccCcchh-----------hhhhcCcccCCCCCccc---------
Q 000672 480 NSLHSQSLSEKFYCTACNNVAIE-VHPHPIL--NVIVCKDCKC-----------LLEKKMHVKDADCSECY--------- 536 (1360)
Q Consensus 480 ~~~~~~~~~~~~~C~~Cg~~~~~-~~~HP~l--~~~~C~~C~~-----------~~~~~~~~~d~d~~~~~--------- 536 (1360)
+++..++++-.++|..|...+.+ ..--|++ .-++|+.|-- -=..|.|....||...+
T Consensus 200 ~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H~iCA~~~pe 279 (669)
T COG5141 200 TSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGHVICAMFNPE 279 (669)
T ss_pred cccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHhHhHHHhcch
Confidence 44566788899999999865433 2223333 2567777730 01234455555554322
Q ss_pred --------------------------ccccC-CCCceeecCC--cccccchhhhcc
Q 000672 537 --------------------------CVWCG-RSSDLVSCKS--CKTLFCTTCVKR 563 (1360)
Q Consensus 537 --------------------------C~~C~-~gg~l~~Cd~--C~~~fc~~Cl~~ 563 (1360)
|-+|. .||.-+-|.. |.++||..|-.+
T Consensus 280 lsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArr 335 (669)
T COG5141 280 LSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARR 335 (669)
T ss_pred hccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhh
Confidence 88997 7889998866 999999999653
No 291
>PRK06893 DNA replication initiation factor; Validated
Probab=74.64 E-value=22 Score=40.12 Aligned_cols=26 Identities=12% Similarity=-0.113 Sum_probs=20.0
Q ss_pred cceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
...+|.-..|+|||--+.|+...+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34689999999999877777666543
No 292
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=74.63 E-value=17 Score=45.22 Aligned_cols=26 Identities=23% Similarity=0.061 Sum_probs=21.0
Q ss_pred cceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
.+.+|.-+.|+|||-.+-++...+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~ 167 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE 167 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 56788999999999888777766644
No 293
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=74.60 E-value=46 Score=38.15 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=28.8
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 792 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P 792 (1360)
.+.-.+|+-..|.|||..++.++..+.... ..+++++.-
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~---g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQH---GVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhc---CceEEEEEc
Confidence 455678999999999998888877765431 236777764
No 294
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.51 E-value=20 Score=43.34 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=21.0
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
++..+|.-+.|+|||..|-+++..+.
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 44568999999999988888776664
No 295
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.34 E-value=18 Score=45.36 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=21.3
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
.++..||.-+.|.|||..|-+++..+.
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345579999999999988887776653
No 296
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=74.31 E-value=17 Score=43.33 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 724 LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
++|+|...-+.+...+. .+..++..++.-+.|+||+..|.+|...++..
T Consensus 3 ~yPW~~~~~~~l~~~~~-------~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~ 51 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQ-------QGLGHHALLFKADSGLGTEQLIRALAQWLMCQ 51 (325)
T ss_pred CCcchHHHHHHHHHHHH-------cCCcceeEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 57888777666544322 22345677789999999999999998887653
No 297
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=73.87 E-value=18 Score=45.49 Aligned_cols=75 Identities=21% Similarity=0.172 Sum_probs=48.3
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 801 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~ 801 (1360)
...+....+++.|.+...-. +.+. ......|.||+-..|.|||+.|-++.... ..+++-|-...++..|.-
T Consensus 248 ~~~k~~l~e~v~~~~~~~e~-~~~~-~~~~~~giLl~GpPGtGKT~lAkava~~~-------~~~fi~v~~~~l~sk~vG 318 (494)
T COG0464 248 EEAKEELKEAIETPLKRPEL-FRKL-GLRPPKGVLLYGPPGTGKTLLAKAVALES-------RSRFISVKGSELLSKWVG 318 (494)
T ss_pred HHHHHHHHHHHHhHhhChHH-HHhc-CCCCCCeeEEECCCCCCHHHHHHHHHhhC-------CCeEEEeeCHHHhccccc
Confidence 44566777777777653221 1110 11345699999999999999888876532 125555554488888877
Q ss_pred HHHH
Q 000672 802 EFMK 805 (1360)
Q Consensus 802 Ei~k 805 (1360)
|..+
T Consensus 319 esek 322 (494)
T COG0464 319 ESEK 322 (494)
T ss_pred hHHH
Confidence 7754
No 298
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=73.66 E-value=9.7 Score=50.32 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=57.2
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWK 800 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~ 800 (1360)
..|-|-|+++|.+- .+..++-...|+|||.+.+.-+.+++.........+|+|+-+. ....-+
T Consensus 8 ~~Ln~~Q~~av~~~----------------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~ 71 (721)
T PRK11773 8 DSLNDKQREAVAAP----------------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMR 71 (721)
T ss_pred HhcCHHHHHHHhCC----------------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHH
Confidence 45889999998632 2456666678999999999999888765444456789998754 455566
Q ss_pred HHHHHhCCCCCCCeEEEEecC
Q 000672 801 QEFMKWRPSELKPLRVFMLED 821 (1360)
Q Consensus 801 ~Ei~k~~p~~~~~l~V~~~~g 821 (1360)
+.+.+.++.....+.+.++|+
T Consensus 72 ~Rl~~~~~~~~~~~~i~TfHs 92 (721)
T PRK11773 72 HRIEQLLGTSQGGMWVGTFHG 92 (721)
T ss_pred HHHHHHhccCCCCCEEEcHHH
Confidence 666666554333344555554
No 299
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=73.52 E-value=25 Score=44.46 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=23.5
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
..++..||.-+.|.|||..|-++...+..
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34568999999999999988888777643
No 300
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=73.19 E-value=33 Score=41.73 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=31.8
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEF 803 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei 803 (1360)
+.-.+|.-++|.|||..++.++..+... .+++|.|.-.--..|.....
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~----g~~VlYvs~EEs~~qi~~Ra 129 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR----GGKVLYVSGEESPEQIKLRA 129 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEECCcCHHHHHHHH
Confidence 4557889999999998888877665432 24777776543344444333
No 301
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=73.15 E-value=10 Score=49.47 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHHHHH
Q 000672 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQE 802 (1360)
Q Consensus 724 LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW~~E 802 (1360)
|-|-|+.+|.+ ..+.+++-...|+|||.+.+.-+.+++.......+.+|+|+. .....+-+..
T Consensus 2 Ln~~Q~~av~~----------------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~R 65 (664)
T TIGR01074 2 LNPQQQEAVEY----------------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKER 65 (664)
T ss_pred CCHHHHHHHhC----------------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHH
Confidence 66788888753 234566777889999999999988887643334456788874 5677778888
Q ss_pred HHHhCCC-CCCCeEEEEecC
Q 000672 803 FMKWRPS-ELKPLRVFMLED 821 (1360)
Q Consensus 803 i~k~~p~-~~~~l~V~~~~g 821 (1360)
+.+.++. ....+.|..+|+
T Consensus 66 l~~~l~~~~~~~v~v~TfHs 85 (664)
T TIGR01074 66 VAKTLGKGEARGLTISTFHT 85 (664)
T ss_pred HHHHhCccccCCeEEEeHHH
Confidence 8776643 223455666654
No 302
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=72.50 E-value=50 Score=40.01 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=23.2
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
..+.+.++.-..|+|||..+-.++..+..
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999988888766543
No 303
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.10 E-value=24 Score=45.00 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=21.6
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
.++..|+.-+.|.|||..|-.|...+.
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345568999999999988888777664
No 304
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=71.75 E-value=35 Score=36.51 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=35.3
Q ss_pred cCCCCEEEEeCCcccCCc----chHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhh
Q 000672 871 QDGPDILVCDEAHMIKNT----RADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDF 925 (1360)
Q Consensus 871 ~~~fdlVIlDEAH~IKN~----~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~f 925 (1360)
...+|+||+||.=.+-+. ...+...+..-....-++|||--.+..+.|+..++.-
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTE 151 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTE 151 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeee
Confidence 458999999998665332 2344455555455557999998766655555554443
No 305
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.74 E-value=29 Score=43.67 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=22.2
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
..++..||.-..|+|||..|..+...+.
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 4456799999999999988877766553
No 306
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=71.62 E-value=7.5 Score=42.16 Aligned_cols=43 Identities=30% Similarity=0.406 Sum_probs=29.9
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL 796 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl 796 (1360)
..+.|.+|.-.+|.|||..|+|++..+...+ .+++.+.-..|+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g----~~v~f~~~~~L~ 87 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG----YSVLFITASDLL 87 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT------EEEEEHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC----cceeEeecCcee
Confidence 3567999999999999999999988877643 356666544443
No 307
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.57 E-value=21 Score=45.19 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=71.0
Q ss_pred cccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHh
Q 000672 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 1193 (1360)
Q Consensus 1114 ~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn 1193 (1360)
...|||-.+.+.++......|.++||.+........+...|+.. .|..+..++|.++..+|.+...+..
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~-----------f~~~v~vlhs~~~~~er~~~~~~~~ 73 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYR-----------FGSQVAVLHSGLSDSEKLQAWRKVK 73 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHH-----------hCCcEEEEECCCCHHHHHHHHHHHH
Confidence 46799999999888888888999999999998888888888752 3667889999999999888777665
Q ss_pred CCCCCCceEEEeecccccccCCccCCCEEEEEc
Q 000672 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVD 1226 (1360)
Q Consensus 1194 ~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D 1226 (1360)
. +..+| ++.|+.+- =+-+.....||+=+
T Consensus 74 ~---g~~~I-VVGTrsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 74 N---GEILV-VIGTRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred c---CCCCE-EECChHHH-cCcccCCCEEEEEC
Confidence 4 34444 55555422 13345565666554
No 308
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=71.56 E-value=1.4 Score=55.02 Aligned_cols=54 Identities=24% Similarity=0.535 Sum_probs=35.8
Q ss_pred CCCcccccccCCC--------CceeecCC--cccccchhhhccc--CCcccccccccCCCceeecCCc
Q 000672 531 DCSECYCVWCGRS--------SDLVSCKS--CKTLFCTTCVKRN--ISEACLSDEVQASCWQCCCCSP 586 (1360)
Q Consensus 531 d~~~~~C~~C~~g--------g~l~~Cd~--C~~~fc~~Cl~~~--~~~~~~~~~~~~~~W~C~~C~p 586 (1360)
|-+.-.|-+|.+- |-.+-|.. |.+.||+.|-.+. +.++.- ...+..=+|-+|.-
T Consensus 114 dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~g--n~~dNVKYCGYCk~ 179 (900)
T KOG0956|consen 114 DRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEG--NISDNVKYCGYCKY 179 (900)
T ss_pred hhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccc--cccccceechhHHH
Confidence 4444469999766 45677865 9999999997642 333321 22345578999943
No 309
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=71.42 E-value=11 Score=49.41 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=54.3
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHHH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 801 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~~ 801 (1360)
.|-|-|+++|.+- .+.+++....|+|||.+.++-+.+++.........+|+|+.+. ....-+.
T Consensus 2 ~Ln~~Q~~av~~~----------------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~ 65 (672)
T PRK10919 2 RLNPGQQQAVEFV----------------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKE 65 (672)
T ss_pred CCCHHHHHHHhCC----------------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHH
Confidence 3678899988632 3445666679999999999999888865333446799999854 4455666
Q ss_pred HHHHhCCCC-CCCeEEEEecC
Q 000672 802 EFMKWRPSE-LKPLRVFMLED 821 (1360)
Q Consensus 802 Ei~k~~p~~-~~~l~V~~~~g 821 (1360)
.+.+.++.. ...+.+..+|+
T Consensus 66 Rl~~~l~~~~~~~v~i~TfHS 86 (672)
T PRK10919 66 RVAQTLGRKEARGLMISTFHT 86 (672)
T ss_pred HHHHHhCcccccCcEEEcHHH
Confidence 666655421 22344555444
No 310
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=71.36 E-value=24 Score=42.93 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=21.8
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
.+.-.+|.-.+|.|||.++..++..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788899999999998888776653
No 311
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=71.14 E-value=21 Score=45.46 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=22.3
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
.++..|+.-+.|.|||..+-+++..+..
T Consensus 35 l~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 35 LAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred CCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 3445689999999999988888877653
No 312
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.96 E-value=24 Score=45.58 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=21.9
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
....|+.-+.|.|||..|..|...+.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcc
Confidence 46778899999999999888887764
No 313
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=70.42 E-value=25 Score=45.61 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHHHHHHHh
Q 000672 728 QVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQEFMKW 806 (1360)
Q Consensus 728 Q~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~~Ei~k~ 806 (1360)
|.+-+.++++.+. .+...++-..+|+|||+..+.-+....... ..+++||++|+. |..|+.+++..+
T Consensus 2 Q~~~~~~i~~al~----------~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l 69 (636)
T TIGR03117 2 QALFYLNCLTSLR----------QKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERL 69 (636)
T ss_pred HHHHHHHHHHHHh----------cCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHH
Confidence 6666666666542 355677788999999987766554433321 136899999955 778888887755
Q ss_pred C
Q 000672 807 R 807 (1360)
Q Consensus 807 ~ 807 (1360)
.
T Consensus 70 ~ 70 (636)
T TIGR03117 70 T 70 (636)
T ss_pred H
Confidence 4
No 314
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=70.01 E-value=5.7 Score=48.20 Aligned_cols=46 Identities=20% Similarity=0.426 Sum_probs=34.9
Q ss_pred ccccCcchhhhhhcCcccC-----CCCCc------ccccccCCCCceeecCCccccc
Q 000672 511 VIVCKDCKCLLEKKMHVKD-----ADCSE------CYCVWCGRSSDLVSCKSCKTLF 556 (1360)
Q Consensus 511 ~~~C~~C~~~~~~~~~~~d-----~d~~~------~~C~~C~~gg~l~~Cd~C~~~f 556 (1360)
.+-|..|--..++|-|..+ ..++. .||.-|--|-.+--|..||.-|
T Consensus 136 i~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~ 192 (707)
T KOG0957|consen 136 ILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRF 192 (707)
T ss_pred eeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcC
Confidence 4567777777777777665 23333 3899999999999999999876
No 315
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=69.80 E-value=2.9 Score=37.57 Aligned_cols=38 Identities=26% Similarity=0.814 Sum_probs=17.3
Q ss_pred ccccCCCCceeec-CCcccccchhhhcccCCcccccccccCCCceeecCCc
Q 000672 537 CVWCGRSSDLVSC-KSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 586 (1360)
Q Consensus 537 C~~C~~gg~l~~C-d~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p 586 (1360)
|..|.+--.--.| ..|...||..|+...+|.+ ||+|..
T Consensus 10 Cs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~------------CPvC~~ 48 (65)
T PF14835_consen 10 CSICFDILKEPVCLGGCEHIFCSSCIRDCIGSE------------CPVCHT 48 (65)
T ss_dssp -SSS-S--SS-B---SSS--B-TTTGGGGTTTB-------------SSS--
T ss_pred CcHHHHHhcCCceeccCccHHHHHHhHHhcCCC------------CCCcCC
Confidence 4444443333333 5699999999998766632 999963
No 316
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.61 E-value=31 Score=42.25 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=22.5
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
..+..|+.-+.|+|||..|.++...+..
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456889999999999998888777643
No 317
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=69.56 E-value=2.2 Score=46.58 Aligned_cols=56 Identities=16% Similarity=0.335 Sum_probs=36.1
Q ss_pred CCcccccccCCCCceeecCCcccccchhhhcccCCccc--ccc----cccCCCceeecCCch
Q 000672 532 CSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEAC--LSD----EVQASCWQCCCCSPS 587 (1360)
Q Consensus 532 ~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~--~~~----~~~~~~W~C~~C~p~ 587 (1360)
+.+..|.+|.+.-.--.-..|...||..||...+-... ... ........||+|...
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 44568999987665555567999999999986532110 000 012356799999644
No 318
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=69.49 E-value=2.9 Score=48.33 Aligned_cols=48 Identities=29% Similarity=0.599 Sum_probs=32.8
Q ss_pred CCCcccccccC---CCCceeecCCcccccchhhhcccCCcccccccccCCCceeecCCchh
Q 000672 531 DCSECYCVWCG---RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSL 588 (1360)
Q Consensus 531 d~~~~~C~~C~---~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~~ 588 (1360)
.....+|..|+ .++.-+-|..|...||..|-. .+. .. --.||-|..+|
T Consensus 327 ~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~iH-es--------Lh~CpgCeh~~ 377 (378)
T KOG2807|consen 327 YNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDV-FIH-ES--------LHNCPGCEHKP 377 (378)
T ss_pred cCCCcceeeeccccCCCCcEEchhccceeeccchH-HHH-hh--------hhcCCCcCCCC
Confidence 33455799993 455678999999999999932 111 11 24699997654
No 319
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=69.06 E-value=21 Score=46.89 Aligned_cols=100 Identities=18% Similarity=0.109 Sum_probs=69.9
Q ss_pred cccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHh
Q 000672 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 1193 (1360)
Q Consensus 1114 ~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn 1193 (1360)
...|||-.+..-.+......|.+++|.+.....+..+...+..+.. ..|+++..++|+++..+|..++....
T Consensus 290 ~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~--------~~~i~v~ll~G~~~~~~r~~~~~~l~ 361 (681)
T PRK10917 290 DVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLE--------PLGIRVALLTGSLKGKERREILEAIA 361 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHh--------hcCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 4678998766554444455688999999998888777777765321 14788999999999999999999988
Q ss_pred CCCCCCceEEEeecccccccCCccCCCEEEE
Q 000672 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVII 1224 (1360)
Q Consensus 1194 ~~~n~~v~VlLISTkAGgeGLNL~~An~VIi 1224 (1360)
+ +.+.|++.+.......+.+.....||+
T Consensus 362 ~---g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 362 S---GEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred C---CCCCEEEchHHHhcccchhcccceEEE
Confidence 6 344555544444545556655555444
No 320
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=68.88 E-value=39 Score=48.12 Aligned_cols=149 Identities=17% Similarity=0.107 Sum_probs=80.8
Q ss_pred chhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHH
Q 000672 719 SISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 798 (1360)
Q Consensus 719 ~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~Q 798 (1360)
.+...|-+-|++++..++. +..+-.+|--.-|.|||.++-+++..+..........++.++|.+-...
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLt------------s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~ 898 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILE------------TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG 898 (1623)
T ss_pred hhhcccCHHHHHHHHHHHh------------CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHH
Confidence 4445799999999987753 2345678888899999988655554432211112235777889764432
Q ss_pred HHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEE
Q 000672 799 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1360)
Q Consensus 799 W~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVI 878 (1360)
=..+. + + ....+..|..... .+.. .........++||
T Consensus 899 ~L~e~------G---i------------~A~TIasfL~~~~-------~~~~---------------~~~~~~~~~~llI 935 (1623)
T PRK14712 899 EMRSA------G---V------------DAQTLASFLHDTQ-------LQQR---------------SGETPDFSNTLFL 935 (1623)
T ss_pred HHHHh------C---c------------hHhhHHHHhcccc-------chhh---------------cccCCCCCCcEEE
Confidence 22221 0 0 0111122211000 0000 0000011457999
Q ss_pred EeCCcccCCcchHHHHHHhhcc-cceEEEEeCCCCCCchhhHHhhhh
Q 000672 879 CDEAHMIKNTRADTTQALKQVK-CQRRIALTGSPLQNNLMEYYCMVD 924 (1360)
Q Consensus 879 lDEAH~IKN~~Sk~skal~~Lk-a~~RllLTGTPiqNnl~EL~sLL~ 924 (1360)
||||-.+-+. ...+.+..+. ...|++|-|=|-|....+--..|.
T Consensus 936 VDEASMV~~~--~m~~ll~~~~~~garvVLVGD~~QL~sV~aG~~F~ 980 (1623)
T PRK14712 936 LDESSMVGNT--DMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFR 980 (1623)
T ss_pred EEccccccHH--HHHHHHHhhhhCCCEEEEEcchhhcCCCCCCHHHH
Confidence 9999988543 3444445443 357899999988766554443333
No 321
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=68.46 E-value=34 Score=49.27 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=45.8
Q ss_pred cCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhh
Q 000672 716 IPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNV 795 (1360)
Q Consensus 716 vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sL 795 (1360)
++..+...|-+-|++++..++. +..+-.+|---.|.|||.+.-+++..+..........++.++|..-
T Consensus 960 ~~~~~~~~Lt~~Q~~Av~~il~------------s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgr 1027 (1747)
T PRK13709 960 VPGELMEGLTSGQRAATRMILE------------STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHR 1027 (1747)
T ss_pred HHHHhcCCCCHHHHHHHHHHHh------------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHH
Confidence 3444456789999999987753 2345778888899999987666655443221112235777889764
Q ss_pred HH
Q 000672 796 LH 797 (1360)
Q Consensus 796 l~ 797 (1360)
..
T Consensus 1028 AA 1029 (1747)
T PRK13709 1028 AV 1029 (1747)
T ss_pred HH
Confidence 43
No 322
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=67.96 E-value=21 Score=35.43 Aligned_cols=21 Identities=29% Similarity=0.195 Sum_probs=16.1
Q ss_pred EEEeCCCchHHHHHHHHHHHH
Q 000672 756 ILAHTMGLGKTFQVIAFLYTA 776 (1360)
Q Consensus 756 ILADeMGLGKTlqaIAlI~~l 776 (1360)
+|--+.|.|||..+-.++..+
T Consensus 2 ll~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhc
Confidence 567789999998777766554
No 323
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=67.69 E-value=58 Score=42.64 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
..++..||.-..|+|||..+.+|...+.
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3456679999999999988888877654
No 324
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=67.60 E-value=34 Score=44.13 Aligned_cols=46 Identities=20% Similarity=0.065 Sum_probs=28.1
Q ss_pred cceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHH
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 800 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~ 800 (1360)
...+|.-..|+|||--+.|+...+..... ...++.|....++..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~--g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYP--GTRVRYVSSEEFTNEFI 360 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCC--CCeEEEeeHHHHHHHHH
Confidence 44788999999999888777766543211 12444444444444433
No 325
>PRK05580 primosome assembly protein PriA; Validated
Probab=67.13 E-value=31 Score=45.41 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=71.9
Q ss_pred cccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHh
Q 000672 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 1193 (1360)
Q Consensus 1114 ~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn 1193 (1360)
...|||....+.++......|.++||.+.....+..+...|... .|..+..++|+++..+|.+...+..
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~-----------fg~~v~~~~s~~s~~~r~~~~~~~~ 238 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRAR-----------FGAPVAVLHSGLSDGERLDEWRKAK 238 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHH-----------hCCCEEEEECCCCHHHHHHHHHHHH
Confidence 35689999988888877777899999999999888888888752 3678899999999999888877776
Q ss_pred CCCCCCceEEEeecccccccCCccCCCEEEEEc
Q 000672 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVIIVD 1226 (1360)
Q Consensus 1194 ~~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D 1226 (1360)
. +.+. ++++|...- =+.+.....||+=+
T Consensus 239 ~---g~~~-IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 239 R---GEAK-VVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred c---CCCC-EEEeccHHh-cccccCCCEEEEEC
Confidence 5 3344 455665322 24455666666655
No 326
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=66.75 E-value=71 Score=38.11 Aligned_cols=127 Identities=19% Similarity=0.193 Sum_probs=66.3
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHHHhCCCCCCCeEEEEecCcchhHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELL 831 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l 831 (1360)
+.-.++.---|.|||-+..=+.+.+...+ +++|+.+--+--.-- .+.+
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g----~~VllaA~DTFRAaA----------------------------iEQL 186 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQG----KSVLLAAGDTFRAAA----------------------------IEQL 186 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCC----CeEEEEecchHHHHH----------------------------HHHH
Confidence 44566677889999976555555544332 356665543222222 2233
Q ss_pred HHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCcccCCcch------HHHHHHhhc--ccce
Q 000672 832 AKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRA------DTTQALKQV--KCQR 903 (1360)
Q Consensus 832 ~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~IKN~~S------k~skal~~L--ka~~ 903 (1360)
..|...-++-+++.. .-. . ...-.+..+......++|+|++|=|-|+-|... ++.+.+... .++|
T Consensus 187 ~~w~er~gv~vI~~~-~G~-----D-pAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~ 259 (340)
T COG0552 187 EVWGERLGVPVISGK-EGA-----D-PAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPH 259 (340)
T ss_pred HHHHHHhCCeEEccC-CCC-----C-cHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCc
Confidence 333333344444321 000 0 001123445555667999999999999977532 222233222 3556
Q ss_pred EEEEe--CCCCCCchh
Q 000672 904 RIALT--GSPLQNNLM 917 (1360)
Q Consensus 904 RllLT--GTPiqNnl~ 917 (1360)
.++|+ ||-=||.+.
T Consensus 260 e~llvlDAttGqnal~ 275 (340)
T COG0552 260 EILLVLDATTGQNALS 275 (340)
T ss_pred eEEEEEEcccChhHHH
Confidence 65555 776666554
No 327
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=66.65 E-value=41 Score=42.23 Aligned_cols=63 Identities=13% Similarity=-0.066 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEech
Q 000672 726 AHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 793 (1360)
Q Consensus 726 phQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~ 793 (1360)
|+|+..+..++ +. ++.......+.++|.-.=|=|||..+.++..+.+-........++++++.
T Consensus 1 PwQ~fi~~~i~----G~-~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSIF----GW-RKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT 63 (477)
T ss_pred CcHHHHHHHHh----ce-EcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC
Confidence 67886665553 11 11111112345777778999999887776655443221112346666663
No 328
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=66.59 E-value=16 Score=41.20 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.7
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
..-.+.|++-..|.|||-.+.++.+.++
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 4557899999999999999888887764
No 329
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=66.43 E-value=81 Score=35.63 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=31.6
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEech----hhHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV----NVLHNW 799 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~----sLl~QW 799 (1360)
.+.-.++.-+.|.|||..+..++......+ .+++.|+.. .++.+|
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g----~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG----YSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEEeCCCCHHHHHHHH
Confidence 355678899999999998888887765432 366777643 444554
No 330
>PRK09183 transposase/IS protein; Provisional
Probab=66.13 E-value=31 Score=39.70 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
.+.+.+|.-+.|.|||..+.++.....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467889999999999998888865544
No 331
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.05 E-value=44 Score=42.67 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=21.3
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
++..|+.-+.|+|||..|-.++..+.
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999998888887664
No 332
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=66.03 E-value=34 Score=41.56 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=22.8
Q ss_pred CEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCC
Q 000672 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGS 910 (1360)
Q Consensus 875 dlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGT 910 (1360)
-++++||.|++ .++|.--.+-.+-....+++-||
T Consensus 106 tiLflDEIHRf--nK~QQD~lLp~vE~G~iilIGAT 139 (436)
T COG2256 106 TILFLDEIHRF--NKAQQDALLPHVENGTIILIGAT 139 (436)
T ss_pred eEEEEehhhhc--ChhhhhhhhhhhcCCeEEEEecc
Confidence 46899999999 34555555555555556666555
No 333
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=65.93 E-value=24 Score=45.49 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=33.5
Q ss_pred cceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHHHHHH----HHhCCC
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQEF----MKWRPS 809 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW~~Ei----~k~~p~ 809 (1360)
.-.+..-+==-|||..+.+++..++.... ...+++++| ..+...--+|+ ++|+|.
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~--Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~ 314 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFR--GIKIGYTAHIRKATEPVFEEIGARLRQWFGA 314 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCC--CCEEEEEcCcHHHHHHHHHHHHHHHhhhcch
Confidence 34455556677999887766665554322 247889998 34444455554 456544
No 334
>PRK13342 recombination factor protein RarA; Reviewed
Probab=65.90 E-value=25 Score=43.29 Aligned_cols=24 Identities=25% Similarity=0.043 Sum_probs=18.7
Q ss_pred CCcceEEEeCCCchHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLY 774 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~ 774 (1360)
.....||.-+.|+|||..+-++..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999977666543
No 335
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=65.58 E-value=45 Score=45.91 Aligned_cols=138 Identities=18% Similarity=0.140 Sum_probs=77.3
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQ 801 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~ 801 (1360)
..|-+-|+++|..+. ....-++|--.-|.|||.+.-++...+... ..+++.++|..-..+=
T Consensus 380 ~~Ls~eQ~~Av~~i~-------------~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~----G~~V~g~ApTgkAA~~-- 440 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA-------------GPARIAAVVGRAGAGKTTMMKAAREAWEAA----GYRVVGGALAGKAAEG-- 440 (1102)
T ss_pred CCCCHHHHHHHHHHh-------------ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEcCcHHHHHH--
Confidence 368899999998662 123456778888999998776655443222 2477888887654422
Q ss_pred HHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeC
Q 000672 802 EFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDE 881 (1360)
Q Consensus 802 Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDE 881 (1360)
+..-+. +....++ ..+..|.. +. .....-++|||||
T Consensus 441 -L~e~~G-----i~a~TIa--------s~ll~~~~-~~-----------------------------~~l~~~~vlVIDE 476 (1102)
T PRK13826 441 -LEKEAG-----IQSRTLS--------SWELRWNQ-GR-----------------------------DQLDNKTVFVLDE 476 (1102)
T ss_pred -HHHhhC-----CCeeeHH--------HHHhhhcc-Cc-----------------------------cCCCCCcEEEEEC
Confidence 221111 1111100 00001100 00 0011356899999
Q ss_pred CcccCCcchHHHHHHhhc-ccceEEEEeCCCCCCchhhHHhhhh
Q 000672 882 AHMIKNTRADTTQALKQV-KCQRRIALTGSPLQNNLMEYYCMVD 924 (1360)
Q Consensus 882 AH~IKN~~Sk~skal~~L-ka~~RllLTGTPiqNnl~EL~sLL~ 924 (1360)
|..+-. ......+..+ ....+++|-|=|-|..+.+--..|.
T Consensus 477 AsMv~~--~~m~~Ll~~~~~~garvVLVGD~~QL~~V~aG~~f~ 518 (1102)
T PRK13826 477 AGMVAS--RQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGAAFR 518 (1102)
T ss_pred cccCCH--HHHHHHHHHHHhcCCEEEEECCHHHcCCCCCCcHHH
Confidence 998843 2344555555 4678999999998765544433333
No 336
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=65.45 E-value=42 Score=36.47 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=35.5
Q ss_pred hcCCCCEEEEeCCcccCCcc----hHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhh
Q 000672 870 LQDGPDILVCDEAHMIKNTR----ADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV 926 (1360)
Q Consensus 870 l~~~fdlVIlDEAH~IKN~~----Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL 926 (1360)
....||+||+||.=.+-+.. ..+...+..-...--++|||.-.+..+.|+..++.-+
T Consensus 94 ~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm 154 (173)
T TIGR00708 94 ADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEM 154 (173)
T ss_pred hcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeee
Confidence 34589999999987543322 3444455444455579999986655555555444433
No 337
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=65.36 E-value=22 Score=43.00 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=21.1
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYT 775 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ 775 (1360)
..+.|.+|.-+.|+|||..+-++...
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999888776554
No 338
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=65.35 E-value=39 Score=45.63 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=21.5
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTA 776 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~l 776 (1360)
....+.||.-+.|.|||..+-+++..+
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 345788999999999998887776554
No 339
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=65.13 E-value=43 Score=40.25 Aligned_cols=47 Identities=13% Similarity=-0.020 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 724 LKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 724 LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
++|+|...-+.+... .+..++..++.-..|.|||..|.+|...++..
T Consensus 2 ~yPW~~~~~~~l~~~---------~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQAL---------RARLPHALLLHGQAGIGKLDFAQHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHh---------cCCcceEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 578887765554321 12456678889999999999999998887654
No 340
>PRK05642 DNA replication initiation factor; Validated
Probab=65.06 E-value=38 Score=38.31 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=25.3
Q ss_pred CCCEEEEeCCcccCCcc---hHHHHHHhhcc-cceEEEEeCC
Q 000672 873 GPDILVCDEAHMIKNTR---ADTTQALKQVK-CQRRIALTGS 910 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~---Sk~skal~~Lk-a~~RllLTGT 910 (1360)
..+++|+|+.|.+.+.. ...+..+..+. ...++++|+|
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 45789999999886543 23444554443 4567888887
No 341
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=64.98 E-value=18 Score=44.40 Aligned_cols=49 Identities=20% Similarity=0.159 Sum_probs=36.4
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK 805 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~k 805 (1360)
...+|.+|+-+.|.|||+.+.|+.... .-++.=|.|.+|..-|.-|..+
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~-------~atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATES-------GATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhh-------cceEeeccHHHhhhhccChHHH
Confidence 356788999999999998888876553 1255667788888888666544
No 342
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=64.41 E-value=5.5 Score=39.52 Aligned_cols=32 Identities=28% Similarity=0.789 Sum_probs=27.4
Q ss_pred CcccccccCC-CCceeecCC--cccccchhhhccc
Q 000672 533 SECYCVWCGR-SSDLVSCKS--CKTLFCTTCVKRN 564 (1360)
Q Consensus 533 ~~~~C~~C~~-gg~l~~Cd~--C~~~fc~~Cl~~~ 564 (1360)
....|.+|+. +|-++-|.. |.+.||..|....
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHHC
Confidence 3458999997 688999988 9999999998654
No 343
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=64.40 E-value=57 Score=36.86 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=28.8
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEe
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 791 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~ 791 (1360)
++...+++-+.|.|||..+.-+++..+..+ .++|+|.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~g----e~~lyvs 56 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG----EPGIYVA 56 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC----CcEEEEE
Confidence 456678899999999999998887765432 3778887
No 344
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=63.27 E-value=18 Score=44.29 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=22.9
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
.++..|+.-+.|.|||..|.+|...++.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3567889999999999999888777643
No 345
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=62.99 E-value=20 Score=45.34 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTA 776 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~l 776 (1360)
.+.|.+|.-++|.|||..+-++...+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhh
Confidence 56789999999999999887776654
No 346
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.78 E-value=63 Score=41.01 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=21.5
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
++..|+.-+.|+|||..+.+|+..+..
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 334599999999999998888877653
No 347
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=62.66 E-value=2.4 Score=50.67 Aligned_cols=40 Identities=23% Similarity=0.553 Sum_probs=22.0
Q ss_pred eeccCcccccc-------ccccc-cccccccCcchhhhhhcCcccCCCCCc
Q 000672 492 YCTACNNVAIE-------VHPHP-ILNVIVCKDCKCLLEKKMHVKDADCSE 534 (1360)
Q Consensus 492 ~C~~Cg~~~~~-------~~~HP-~l~~~~C~~C~~~~~~~~~~~d~d~~~ 534 (1360)
.|++||..|.+ --.|| -|...+|..| +..-.|..|.+++-
T Consensus 336 kC~~Cg~~I~d~iLrA~GkayHp~CF~Cv~C~r~---ldgipFtvd~~n~v 383 (468)
T KOG1701|consen 336 KCNKCGEPIMDRILRALGKAYHPGCFTCVVCARC---LDGIPFTVDSQNNV 383 (468)
T ss_pred HHhhhhhHHHHHHHHhcccccCCCceEEEEeccc---cCCccccccCCCce
Confidence 45666655432 11477 3344444444 44557888887764
No 348
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=62.65 E-value=52 Score=48.41 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=42.3
Q ss_pred hhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHH
Q 000672 722 AKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 797 (1360)
Q Consensus 722 ~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~ 797 (1360)
..|-+-|+.++..++. +..+-.++--.-|.|||.+..+++..+..........++.++|.+-..
T Consensus 1018 ~~Lt~~Q~~Ai~~il~------------~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa 1081 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS------------TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV 1081 (1960)
T ss_pred CCCCHHHHHHHHHHHh------------CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 5689999999987753 234556777888999998876554443332222224677788976443
No 349
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=62.48 E-value=56 Score=38.92 Aligned_cols=50 Identities=16% Similarity=0.024 Sum_probs=37.1
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
.++|+|...-+.+...+ ..+.-++..++....|+||+..|.+|+..++-.
T Consensus 3 ~~yPWl~~~~~~l~~~~-------~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~ 52 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGL-------DAGRIPGALLLQSDEGLGVESLVELFSRALLCQ 52 (319)
T ss_pred cCcccHHHHHHHHHHHH-------HcCCcceeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 47888888776664432 123456678899999999999999998887644
No 350
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=62.35 E-value=20 Score=47.46 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=55.5
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh-hHHHHHH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN-VLHNWKQ 801 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s-Ll~QW~~ 801 (1360)
.|-|-|+.+|.+. .+..++-...|+|||.+.+.-+.+++.........+|+|+-+. ....-++
T Consensus 4 ~Ln~~Q~~av~~~----------------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~ 67 (726)
T TIGR01073 4 HLNPEQREAVKTT----------------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKE 67 (726)
T ss_pred ccCHHHHHHHhCC----------------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHH
Confidence 5889999998632 2446666788999999999998888765433445788888753 4445555
Q ss_pred HHHHhCCCCCCCeEEEEecC
Q 000672 802 EFMKWRPSELKPLRVFMLED 821 (1360)
Q Consensus 802 Ei~k~~p~~~~~l~V~~~~g 821 (1360)
.+.+.++.....+.+..+|+
T Consensus 68 Rl~~~~~~~~~~~~i~TFHs 87 (726)
T TIGR01073 68 RVEKLLGPVAEDIWISTFHS 87 (726)
T ss_pred HHHHHhccccCCcEEEcHHH
Confidence 56655554333455555554
No 351
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=62.08 E-value=15 Score=41.36 Aligned_cols=20 Identities=30% Similarity=0.266 Sum_probs=14.7
Q ss_pred CcceEEEeCCCchHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFL 773 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI 773 (1360)
-...||.-+.|+||| ++|-+
T Consensus 50 l~h~lf~GPPG~GKT--TLA~I 69 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKT--TLARI 69 (233)
T ss_dssp --EEEEESSTTSSHH--HHHHH
T ss_pred cceEEEECCCccchh--HHHHH
Confidence 457999999999999 44444
No 352
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=61.98 E-value=80 Score=36.84 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=19.4
Q ss_pred cceEEEeCCCchHHHHHHHHHHHH
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTA 776 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~l 776 (1360)
...+|.-+.|.|||..+-++...+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999998887776554
No 353
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=61.84 E-value=3.8 Score=55.08 Aligned_cols=122 Identities=32% Similarity=0.397 Sum_probs=107.9
Q ss_pred CCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeeccccccc
Q 000672 1134 GDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLG 1213 (1360)
Q Consensus 1134 g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAGgeG 1213 (1360)
..|||||||+...++.++..+.. +++.+.+..+ +. .-...+..|.. +.|||+-++.|+-|
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~------------N~I~~~~~~~-t~--d~~dc~~~fk~-----I~clll~~~~~~~G 1280 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLM------------NLIKKQLDGE-TE--DFDDCIICFKS-----IDCLLLFVSKGSKG 1280 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHh------------hhhHhhhccC-Cc--chhhhhhhccc-----ceEEEEEeccCccc
Confidence 36999999999999999999885 5777655544 33 45668888874 77899999999999
Q ss_pred CCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHHHHH
Q 000672 1214 INLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGL 1275 (1360)
Q Consensus 1214 LNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K~~L 1275 (1360)
+||..|.||++.+|--||+.+.||+||+|||||++|+.||+|+..+|+||.|+.....|...
T Consensus 1281 LNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~ 1342 (1394)
T KOG0298|consen 1281 LNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEET 1342 (1394)
T ss_pred ccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999998887543
No 354
>PRK10865 protein disaggregation chaperone; Provisional
Probab=61.84 E-value=30 Score=46.75 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=21.7
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTA 776 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~l 776 (1360)
....+.||.-+.|.|||..+-++...+
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999998887776654
No 355
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=61.82 E-value=1.2e+02 Score=35.39 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=32.3
Q ss_pred CCCEEEEeCCcccCCcchHHHHHHhh----ccc-ceEEEEeCCCCCCchhhHHhhhhhhcc
Q 000672 873 GPDILVCDEAHMIKNTRADTTQALKQ----VKC-QRRIALTGSPLQNNLMEYYCMVDFVRE 928 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~Sk~skal~~----Lka-~~RllLTGTPiqNnl~EL~sLL~fL~p 928 (1360)
++|+||+|-+=+.-+.. .....+.. ... ...++|+||--.+...+....++-+.+
T Consensus 154 ~~D~ViIDt~Gr~~~~~-~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~ 213 (270)
T PRK06731 154 RVDYILIDTAGKNYRAS-ETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHI 213 (270)
T ss_pred CCCEEEEECCCCCcCCH-HHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCC
Confidence 68899999886553222 22222222 222 335678888777777777666665543
No 356
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=61.68 E-value=46 Score=36.80 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=23.6
Q ss_pred eEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEech
Q 000672 755 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 793 (1360)
Q Consensus 755 gILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~ 793 (1360)
-++.-.|..|||...|-.+..+... ..+++|..|.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~----g~~v~vfkp~ 41 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEA----GMKVLVFKPA 41 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHc----CCeEEEEecc
Confidence 3567899999997655544443322 3578888886
No 357
>PF01197 Ribosomal_L31: Ribosomal protein L31; InterPro: IPR002150 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L31 is one of the proteins from the large ribosomal subunit. L31 is a protein of 66 to 97 amino-acid residues which has only been found so far in bacteria and in some plant and algal chloroplasts.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3D5D_4 3PYO_1 3D5B_4 3PYV_1 3PYT_1 3MRZ_1 3MS1_1 3PYR_1 3F1F_4 3F1H_4 ....
Probab=61.46 E-value=5.8 Score=36.38 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=31.2
Q ss_pred CCceeeccCccccc--cccccccccccccCcchhhhhhcCcccCCCC
Q 000672 488 SEKFYCTACNNVAI--EVHPHPILNVIVCKDCKCLLEKKMHVKDADC 532 (1360)
Q Consensus 488 ~~~~~C~~Cg~~~~--~~~~HP~l~~~~C~~C~~~~~~~~~~~d~d~ 532 (1360)
.-.|.|++||.... -...-|++.+-+|..|+.+|.-..-..|..|
T Consensus 11 ~v~v~c~s~g~~~~~~St~~~~~~~vdi~s~~HPfytG~~~~~~~~G 57 (69)
T PF01197_consen 11 EVKVTCSSCGNTFETRSTKEYPVIKVDICSNCHPFYTGKQKVVDTAG 57 (69)
T ss_dssp EEEEEES-SSSCECECSSSSES-EEECSCSSSSCTTCSCSSCSCCCC
T ss_pred EEEEEEcCCCCEEEEEECCcceEEEEeecCCCCEEEcCcEEEEcccc
Confidence 34699999997633 2334567899999999999987655555544
No 358
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=61.43 E-value=6.5 Score=37.38 Aligned_cols=51 Identities=14% Similarity=0.333 Sum_probs=36.0
Q ss_pred CCCcccccccCCC-CceeecCC--cccccchhhhcccCCcccccccccCCCceeecC
Q 000672 531 DCSECYCVWCGRS-SDLVSCKS--CKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 584 (1360)
Q Consensus 531 d~~~~~C~~C~~g-g~l~~Cd~--C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C 584 (1360)
.+....|.+|... |-.+.|.. |.+.||..|-...-..-.. .....|...+|
T Consensus 33 ~~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~---~~~~~~~~~~C 86 (90)
T PF13771_consen 33 RRRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGCFIEF---DEDNGKFRIFC 86 (90)
T ss_pred HHhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCeEEEE---ccCCCceEEEC
Confidence 3445579999998 99999977 9999999997643222211 12345777777
No 359
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=61.35 E-value=40 Score=41.82 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=25.1
Q ss_pred CCCEEEEeCCcccCCcchHHHHHHhhc-ccceEEEEeCCCCCC
Q 000672 873 GPDILVCDEAHMIKNTRADTTQALKQV-KCQRRIALTGSPLQN 914 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~Sk~skal~~L-ka~~RllLTGTPiqN 914 (1360)
-+|+|.+||++-+ + ...++.+..+ +.+.|++--+--+||
T Consensus 295 ~yD~ilIDE~QDF--P-~~F~~Lcf~~tkd~KrlvyAyDelQn 334 (660)
T COG3972 295 AYDYILIDESQDF--P-QSFIDLCFMVTKDKKRLVYAYDELQN 334 (660)
T ss_pred cccEEEecccccC--C-HHHHHHHHHHhcCcceEEEehHhhhc
Confidence 7899999999977 2 2344444444 556777766544443
No 360
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.34 E-value=8.1 Score=45.27 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=34.8
Q ss_pred CcccccchhhhcccCCcccccccccCCCceeecCCch-h-------------HHHHHHHHHhhhcCcccccCCCC
Q 000672 551 SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS-L-------------LKRLTSELGRAMGSENLIVSSSE 611 (1360)
Q Consensus 551 ~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~-~-------------l~~L~~~~~~~~~~~~~~~~~s~ 611 (1360)
.|...||..|+.+.+..+ +=.||.|.-. . ..+=++.+++|+.-.+.+..+=+
T Consensus 25 ~CGH~~C~sCv~~l~~~~---------~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iRkrv~~i~Nk~e~dF~ 90 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRG---------SGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIRKRVLKIYNKREEDFP 90 (309)
T ss_pred CCCCcccHHHHHHHhcCC---------CCCCCCCCCccchhhccccccccHHHHHHHHHHHHHHHHHccchhccC
Confidence 799999999999876433 2379999532 1 22346677777777776555444
No 361
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=61.26 E-value=33 Score=44.68 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=67.8
Q ss_pred cccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHh
Q 000672 1114 LDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFN 1193 (1360)
Q Consensus 1114 ~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn 1193 (1360)
...|||-.+..-.+......|.+++|-+.....+..+...+..+.. ..|+++..++|+++..+|..++....
T Consensus 264 ~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~--------~~gi~v~lltg~~~~~~r~~~~~~i~ 335 (630)
T TIGR00643 264 DVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLA--------PLGIEVALLTGSLKGKRRKELLETIA 335 (630)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhc--------ccCcEEEEEecCCCHHHHHHHHHHHh
Confidence 4678998765443333445688999999988887777777765321 13789999999999999999998887
Q ss_pred CCCCCCceEEEeecccccccCCccCCCEEEE
Q 000672 1194 EPLNKRVKCTLISTRAGSLGINLHSANRVII 1224 (1360)
Q Consensus 1194 ~~~n~~v~VlLISTkAGgeGLNL~~An~VIi 1224 (1360)
. +.+.|++.+....-..+.+.....||+
T Consensus 336 ~---g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 336 S---GQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred C---CCCCEEEecHHHHhccccccccceEEE
Confidence 5 344455554444444555555554443
No 362
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.24 E-value=1.9e+02 Score=35.82 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=45.2
Q ss_pred CCCEEEEeCCcccCCcchHHHHHHhhc-----ccceEEEEeCCCCCCchhhHHhhhhhhccC-----------CCCChHH
Q 000672 873 GPDILVCDEAHMIKNTRADTTQALKQV-----KCQRRIALTGSPLQNNLMEYYCMVDFVREG-----------FLGSSHE 936 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~Sk~skal~~L-----ka~~RllLTGTPiqNnl~EL~sLL~fL~p~-----------~lgs~~e 936 (1360)
.+++|++|.+=+..+ .......+..+ .....++|+||--.+.+.+++..+..+.+. .+|..-.
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TKlDEt~~~G~~l~ 347 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALD 347 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeeeCCCCccHHHH
Confidence 678888888643322 12233334333 234568899998788888877777665543 3455555
Q ss_pred HHhhccCCcccC
Q 000672 937 FRNRFQNPIENG 948 (1360)
Q Consensus 937 F~~~f~~pi~~g 948 (1360)
+...+..|+..-
T Consensus 348 ~~~~~~lPi~yv 359 (420)
T PRK14721 348 AVIRRKLVLHYV 359 (420)
T ss_pred HHHHhCCCEEEE
Confidence 666666666543
No 363
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=60.80 E-value=28 Score=42.69 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=28.3
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 798 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~Q 798 (1360)
..+.|.+|.-+.|.|||..+=++.... ..+++.+.+..++..
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l-------~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHT-------TATFIRVVGSEFVQK 218 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc-------CCCEEEEehHHHHHH
Confidence 357899999999999998877765442 124555555444433
No 364
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.75 E-value=44 Score=43.32 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=21.8
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
++..|+.-..|.|||..+.+|...+..
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445689999999999988888777653
No 365
>PHA02929 N1R/p28-like protein; Provisional
Probab=60.75 E-value=4.3 Score=46.04 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=30.4
Q ss_pred CCcccccccCCCCce--------eecCCcccccchhhhcccCCcccccccccCCCceeecCCc
Q 000672 532 CSECYCVWCGRSSDL--------VSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 586 (1360)
Q Consensus 532 ~~~~~C~~C~~gg~l--------~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p 586 (1360)
..+..|.+|.+.-.- ..=..|..+||..||.+.+... =.||+|.-
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~----------~tCPlCR~ 224 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK----------NTCPVCRT 224 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC----------CCCCCCCC
Confidence 345689999886321 1223689999999998765322 16999964
No 366
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=60.60 E-value=13 Score=44.26 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=28.0
Q ss_pred CEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCc
Q 000672 875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNN 915 (1360)
Q Consensus 875 dlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNn 915 (1360)
-+||+||||+ ....+.--.+.+|-...+..+||.+.|-+
T Consensus 245 AfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiD 283 (348)
T COG1702 245 AFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQID 283 (348)
T ss_pred eEEEEecccc--cchhhhceeeeeecCCceEEEEcCccccc
Confidence 3599999997 22233334566777888999999998744
No 367
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=60.41 E-value=80 Score=39.31 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=26.5
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 792 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P 792 (1360)
.+.-.+++-..|.|||.++..++..+... + .++++|+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~---g-~kV~lV~~ 131 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK---G-LKVGLVAA 131 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc---C-CeEEEecC
Confidence 34567789999999999988887665432 2 35555553
No 368
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=60.18 E-value=37 Score=44.92 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=19.1
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLY 774 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~ 774 (1360)
......||.-+.|+|||..+-++..
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999977666543
No 369
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.95 E-value=67 Score=41.81 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=22.8
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
+...|+.-+.|+|||..|.+|+..+..
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcC
Confidence 456789999999999999998887754
No 370
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=59.46 E-value=73 Score=34.26 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=36.0
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcc------cCCCceEEEechhhHHHHHHHHHHhC
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVN------LGLRTALIVTPVNVLHNWKQEFMKWR 807 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~------~~~k~~LIV~P~sLl~QW~~Ei~k~~ 807 (1360)
+.=++++-..|.|||..++.++..+..... ....++|+|..-.-..++..-+....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 445889999999999999988887764211 12358888887665666666666554
No 371
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=59.41 E-value=28 Score=44.48 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=30.3
Q ss_pred CCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hh----hHHHHHHHHHHhCCCC
Q 000672 760 TMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VN----VLHNWKQEFMKWRPSE 810 (1360)
Q Consensus 760 eMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~s----Ll~QW~~Ei~k~~p~~ 810 (1360)
+=-=|||..++++|..++..-. .-.+..|+= +. +...-...+.+|+|..
T Consensus 210 PRRHGKTWf~VpiIsllL~s~~--gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~ 263 (668)
T PHA03372 210 PRRHGKTWFIIPIISFLLKNII--GISIGYVAHQKHVSQFVLKEVEFRCRRMFPRK 263 (668)
T ss_pred cccCCceehHHHHHHHHHHhhc--CceEEEEeeHHHHHHHHHHHHHHHHhhhcCcc
Confidence 4456999998888887776432 125666653 22 2333455567898863
No 372
>PRK08939 primosomal protein DnaI; Reviewed
Probab=59.33 E-value=30 Score=40.99 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=32.0
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 799 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW 799 (1360)
.+.|.+|.-.+|.|||..+.|+...+...+ .++++|.-+.++...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g----~~v~~~~~~~l~~~l 199 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG----VSSTLLHFPEFIREL 199 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC----CCEEEEEHHHHHHHH
Confidence 467888999999999999999988876432 355555444444433
No 373
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=59.22 E-value=89 Score=36.04 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=28.2
Q ss_pred ceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhH------HHHHHHHH
Q 000672 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVL------HNWKQEFM 804 (1360)
Q Consensus 754 GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl------~QW~~Ei~ 804 (1360)
-+.+.-++|.|||+..=+++..+ . +..-++|+.|+.++ .-|..++.
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~-~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASL-N----EDQVAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhc-C----CCceEEEEecCcchhHHHHHHHHHHHhc
Confidence 45667899999998877544443 2 22344567675543 33666664
No 374
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=59.20 E-value=32 Score=45.65 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=29.5
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 799 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW 799 (1360)
..+.|.+|.-..|.|||..|-++.... ..+++.|-++.++..|
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~-------~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATES-------GANFIAVRGPEILSKW 527 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc-------CCCEEEEehHHHhhcc
Confidence 346788999999999998887766543 1255666666555544
No 375
>PRK11823 DNA repair protein RadA; Provisional
Probab=59.02 E-value=88 Score=39.05 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=33.1
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK 805 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~k 805 (1360)
+.-.+|.-++|.|||..++.++...... ..++|.|.-.....|......+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~----g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA----GGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEccccHHHHHHHHHH
Confidence 4456789999999999888887765432 2477777754444554444333
No 376
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.96 E-value=76 Score=40.06 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=20.2
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
++..|+.-+.|.|||..|-.+...+.
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44567899999999988877776653
No 377
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=58.94 E-value=58 Score=36.32 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=20.8
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTA 776 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~l 776 (1360)
.+...+|.-+.|+|||-.+.++....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999998777766554
No 378
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=58.66 E-value=3.2 Score=52.13 Aligned_cols=46 Identities=30% Similarity=0.789 Sum_probs=33.7
Q ss_pred cccccCCCC-----ceeecCCcccccchhhhcccCCcccccccccCCCceeecCCc
Q 000672 536 YCVWCGRSS-----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 586 (1360)
Q Consensus 536 ~C~~C~~gg-----~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p 586 (1360)
-|.+|+.+| .++.|..|...||..|+....-...+ ...|.|+-|..
T Consensus 20 mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l-----~~gWrC~~crv 70 (694)
T KOG4443|consen 20 MCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVL-----SGGWRCPSCRV 70 (694)
T ss_pred hhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHh-----cCCcccCCcee
Confidence 466776555 58899999999999999865444433 24599999853
No 379
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.65 E-value=73 Score=39.56 Aligned_cols=95 Identities=22% Similarity=0.288 Sum_probs=71.1
Q ss_pred CCCCCCCCccccccCCHHHHHHHHHHHHHhhhHHHHHHH-----HHhHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 000672 35 SISGQDDGLHLEEHLTEEEIEELIAEFLEVESKAAEAQE-----ALELESLVKLKNEVREELAQALHGDDLEAAVEDEMT 109 (1360)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (1360)
..++....+.+|..=..+-|..||+.+-+++.+.+++.. .-|-|.|.+-|+-|.+-+.+.+++. ..|+.
T Consensus 42 ltpee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~------~~~~~ 115 (472)
T TIGR03752 42 LSPEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSE------TQELT 115 (472)
T ss_pred CCcchhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh------hHHHH
Confidence 445556677788877888899999999999999888764 3466788888888888888887762 23444
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHhhhc
Q 000672 110 VYKEQWEAALDELETESAHLLEQLDG 135 (1360)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (1360)
.=+++-+.++..|...+..|+.||++
T Consensus 116 ~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 116 KEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444556677888888888999875
No 380
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=58.63 E-value=5 Score=38.18 Aligned_cols=29 Identities=24% Similarity=0.506 Sum_probs=22.0
Q ss_pred CCcccccchhhhcccCCcccccccccCCCceeecCC
Q 000672 550 KSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 585 (1360)
Q Consensus 550 d~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 585 (1360)
..|...||..||..-+...... =.|++|.
T Consensus 50 g~C~H~FH~hCI~kWl~~~~~~-------~~CPmCR 78 (85)
T PF12861_consen 50 GKCSHNFHMHCILKWLSTQSSK-------GQCPMCR 78 (85)
T ss_pred ccCccHHHHHHHHHHHccccCC-------CCCCCcC
Confidence 3599999999999887754221 2899995
No 381
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=58.29 E-value=50 Score=37.82 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=24.7
Q ss_pred CchHHHHHHHHHHHHHHhcccCCCceEEE--echhhHH
Q 000672 762 GLGKTFQVIAFLYTAMRSVNLGLRTALIV--TPVNVLH 797 (1360)
Q Consensus 762 GLGKTlqaIAlI~~ll~~~~~~~k~~LIV--~P~sLl~ 797 (1360)
|.|||-.+.++...+.+.+ +++|+| +|.+++.
T Consensus 12 GvG~TTltAnLA~aL~~~G----~~VlaID~dpqN~Lr 45 (243)
T PF06564_consen 12 GVGKTTLTANLAWALARLG----ESVLAIDLDPQNLLR 45 (243)
T ss_pred CCCHHHHHHHHHHHHHHCC----CcEEEEeCCcHHHHH
Confidence 8999999999888876654 377777 5877764
No 382
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=58.18 E-value=67 Score=41.33 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=21.9
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
..++..|+.-+.|+|||..|-.|...+.
T Consensus 36 ~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 36 KISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455678899999999988888876654
No 383
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=58.02 E-value=1e+02 Score=32.71 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=18.8
Q ss_pred eEEEeCCCchHHHHHHHHHHHHHH
Q 000672 755 CILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 755 gILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
.++.-..|.|||..+..++..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 366788999999998888776544
No 384
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=57.99 E-value=3.2 Score=34.16 Aligned_cols=38 Identities=24% Similarity=0.614 Sum_probs=25.3
Q ss_pred cccccCC----CCceeecCCcccccchhhhcccCCcccccccccCCCceeecC
Q 000672 536 YCVWCGR----SSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 584 (1360)
Q Consensus 536 ~C~~C~~----gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C 584 (1360)
.|.+|.+ +..++... |...||..|+...+... -.||+|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----------~~CP~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----------NSCPVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----------SB-TTT
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----------CcCCcc
Confidence 4666653 34455555 99999999998765332 289888
No 385
>PHA02926 zinc finger-like protein; Provisional
Probab=57.88 E-value=4 Score=45.20 Aligned_cols=50 Identities=24% Similarity=0.450 Sum_probs=31.7
Q ss_pred cccccccCCCC---ceee------cCCcccccchhhhcccCCcccccccccCCCceeecCCch
Q 000672 534 ECYCVWCGRSS---DLVS------CKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 534 ~~~C~~C~~gg---~l~~------Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
+..|.+|.+.- .+.- =+.|..+||..||........ .......||+|.-.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~----~~~~~rsCPiCR~~ 228 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR----ETGASDNCPICRTR 228 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc----ccCcCCcCCCCcce
Confidence 45799998642 1111 135899999999987655321 12345789999543
No 386
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=57.84 E-value=79 Score=35.49 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=33.6
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK 805 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~k 805 (1360)
.+.-.+++-+.|.|||.-+..+++..... ..+++.|.=.....+..+.+..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g~~~~y~~~e~~~~~~~~~~~~ 74 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ----GKKVYVITTENTSKSYLKQMES 74 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC----CCEEEEEEcCCCHHHHHHHHHH
Confidence 35567888999999999999988765543 2477777643333344444443
No 387
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.42 E-value=69 Score=41.36 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=22.0
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
..+..|+.-+-|.|||..+.+|...+.
T Consensus 37 ~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 37 VAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 445668999999999999888877764
No 388
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=57.34 E-value=73 Score=42.03 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=22.5
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
..+..|+.-+.|.|||..|-+++..+..
T Consensus 39 l~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 39 ISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 3456789999999999999888777643
No 389
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=57.31 E-value=4.2 Score=49.24 Aligned_cols=49 Identities=20% Similarity=0.516 Sum_probs=36.8
Q ss_pred CCCcccccccCCC-----CceeecCCcccccchhhhcccCCcccccccccCCCceeecCCch
Q 000672 531 DCSECYCVWCGRS-----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 531 d~~~~~C~~C~~g-----g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
|..+..|++|..- ..++-||+|.-+-|++|-... -.++|.|.|--|--.
T Consensus 190 d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~--------f~peG~WlCrkCi~~ 243 (669)
T COG5141 190 DEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQ--------FLPEGFWLCRKCIYG 243 (669)
T ss_pred hhhhhhhHhccccccCCcceEEEecCcchhhhhhcccce--------ecCcchhhhhhhccc
Confidence 4466688888643 568999999999999996443 335689999888444
No 390
>PRK07952 DNA replication protein DnaC; Validated
Probab=57.27 E-value=39 Score=38.69 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=31.0
Q ss_pred cceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHH
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFM 804 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~ 804 (1360)
.+.+|.-..|+|||..+.+++..+...+ .+++++. +..|...+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g----~~v~~it----~~~l~~~l~ 143 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG----KSVLIIT----VADIMSAMK 143 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC----CeEEEEE----HHHHHHHHH
Confidence 5789999999999999999888876532 3555553 344544443
No 391
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=56.87 E-value=38 Score=45.73 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhccc---CCCceE------EEechhhHHH
Q 000672 728 QVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL---GLRTAL------IVTPVNVLHN 798 (1360)
Q Consensus 728 Q~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~---~~k~~L------IV~P~sLl~Q 798 (1360)
|..-++.|+..+.. ....+.||.-+.|.|||..+=++...+...... ...+++ ++++.....+
T Consensus 192 r~~ei~~~i~~l~r--------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge 263 (852)
T TIGR03345 192 RDDEIRQMIDILLR--------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE 263 (852)
T ss_pred CHHHHHHHHHHHhc--------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchH
Q ss_pred HHHHHHHhCCCCCCCeEEEEecCcchhHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEE
Q 000672 799 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1360)
Q Consensus 799 W~~Ei~k~~p~~~~~l~V~~~~g~~~~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVI 878 (1360)
|...+...+.. ..-.....+++
T Consensus 264 ~e~~lk~ii~e----------------------------------------------------------~~~~~~~~ILf 285 (852)
T TIGR03345 264 FENRLKSVIDE----------------------------------------------------------VKASPQPIILF 285 (852)
T ss_pred HHHHHHHHHHH----------------------------------------------------------HHhcCCCeEEE
Q ss_pred EeCCcccCC-----cchHHHHHHhhc--ccceEEEEeCCC
Q 000672 879 CDEAHMIKN-----TRADTTQALKQV--KCQRRIALTGSP 911 (1360)
Q Consensus 879 lDEAH~IKN-----~~Sk~skal~~L--ka~~RllLTGTP 911 (1360)
+||+|.+-. .....+..++.. +..-+++.+-||
T Consensus 286 IDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~ 325 (852)
T TIGR03345 286 IDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTW 325 (852)
T ss_pred EeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCH
No 392
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.84 E-value=1.2e+02 Score=38.61 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=19.3
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
+.-.+|.-..|.|||..+..++..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445556778999999888777665433
No 393
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=56.30 E-value=5.1 Score=50.38 Aligned_cols=43 Identities=26% Similarity=0.698 Sum_probs=32.8
Q ss_pred ccccCCC-----CceeecCC--cccccchhhhcccCCcccccccccCCCceeecCCch
Q 000672 537 CVWCGRS-----SDLVSCKS--CKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 537 C~~C~~g-----g~l~~Cd~--C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
|-||.|- .-|+-||. |.-+-|+.|- |.. .++.++|+|--|...
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCY----GIv----qVPtGpWfCrKCesq 57 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACY----GIV----QVPTGPWFCRKCESQ 57 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcc----eeE----ecCCCchhhhhhhhh
Confidence 6666654 36999998 9999999994 433 457899999999543
No 394
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=56.03 E-value=41 Score=36.40 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
..++..||.-+.|.|||..+..++..+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34567889999999999998888877754
No 395
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=55.65 E-value=67 Score=34.05 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=34.2
Q ss_pred CCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhcc
Q 000672 872 DGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVRE 928 (1360)
Q Consensus 872 ~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p 928 (1360)
..||+||+|=...+-+ ... .+..+.....+++..+|-..++.+...++.++..
T Consensus 66 ~~yD~VIiD~pp~~~~---~~~-~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 66 GELDYLVIDMPPGTGD---EHL-TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred CCCCEEEEeCCCCCcH---HHH-HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 4799999998776521 111 1222234455666668888888888888887764
No 396
>CHL00095 clpC Clp protease ATP binding subunit
Probab=55.55 E-value=46 Score=44.78 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=21.2
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTA 776 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~l 776 (1360)
...+.||.-+.|.|||..+-++...+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999998877776554
No 397
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=55.29 E-value=7.5 Score=41.37 Aligned_cols=48 Identities=27% Similarity=0.632 Sum_probs=33.0
Q ss_pred ccccC------CCCceeecCCcccccchhhhcccCCcccccccccCCC--ceeecC
Q 000672 537 CVWCG------RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASC--WQCCCC 584 (1360)
Q Consensus 537 C~~C~------~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~--W~C~~C 584 (1360)
|.+|+ .-|-||-|-.|..+||+.||..--.+.-+--....+. -+|-+|
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~C 57 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRC 57 (175)
T ss_pred cccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhh
Confidence 66664 4578999999999999999876555554432233333 357777
No 398
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=54.83 E-value=26 Score=44.41 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=47.0
Q ss_pred chhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhc--ccCCCceEEEechhhH
Q 000672 719 SISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV--NLGLRTALIVTPVNVL 796 (1360)
Q Consensus 719 ~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~--~~~~k~~LIV~P~sLl 796 (1360)
+++.++.+-|-+.+++ .++.-.|+--..|+|||-.|+-=+++++-.. ....+++||+.|..+.
T Consensus 208 dIV~TIQkEQneIIR~---------------ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vF 272 (747)
T COG3973 208 DIVETIQKEQNEIIRF---------------EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVF 272 (747)
T ss_pred HHHHHhhHhHHHHHhc---------------cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHH
Confidence 3456667777776653 2344566777899999977776555554332 2345789999999987
Q ss_pred HHHHHHH
Q 000672 797 HNWKQEF 803 (1360)
Q Consensus 797 ~QW~~Ei 803 (1360)
.-....+
T Consensus 273 leYis~V 279 (747)
T COG3973 273 LEYISRV 279 (747)
T ss_pred HHHHHHh
Confidence 7665544
No 399
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=54.56 E-value=4.3 Score=49.45 Aligned_cols=71 Identities=21% Similarity=0.433 Sum_probs=48.2
Q ss_pred ccccccccccccCcchhhhhhcCcccCCCCCcccccccCCCCceeecCCcccccchhhhcccCCcccccccccCCCceee
Q 000672 503 VHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCC 582 (1360)
Q Consensus 503 ~~~HP~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~ 582 (1360)
..-||.|.+.- ......|++-+.-.|..|.+..+-..=..|...||..|+.--+ ........-.||
T Consensus 514 ~aDHP~LVl~S---------~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv-----~~f~~~~nvtCP 579 (791)
T KOG1002|consen 514 AADHPDLVLYS---------ANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYV-----ESFMENNNVTCP 579 (791)
T ss_pred hccCcceeeeh---------hhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHH-----HhhhcccCCCCc
Confidence 44699765432 2223344555555899999999988888899999999986332 222334458899
Q ss_pred cCCch
Q 000672 583 CCSPS 587 (1360)
Q Consensus 583 ~C~p~ 587 (1360)
.|...
T Consensus 580 ~C~i~ 584 (791)
T KOG1002|consen 580 VCHIG 584 (791)
T ss_pred ccccc
Confidence 99644
No 400
>PRK04328 hypothetical protein; Provisional
Probab=54.47 E-value=1e+02 Score=35.18 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=27.3
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEe
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 791 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~ 791 (1360)
+.-.+++-+.|.|||..+.-|++..+..+ .++++|.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~g----e~~lyis 58 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMG----EPGVYVA 58 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcC----CcEEEEE
Confidence 45567899999999999998887765443 3667775
No 401
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.46 E-value=76 Score=41.03 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=21.1
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
++..|+.-+.|+|||..+.+++..+.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34458999999999999888877664
No 402
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.40 E-value=4.2 Score=44.65 Aligned_cols=82 Identities=27% Similarity=0.485 Sum_probs=46.8
Q ss_pred cccccCcchhhhhhc-------CcccCCCCCcccccccCCCCceeecC--CcccccchhhhcccCCcccccccccCCCce
Q 000672 510 NVIVCKDCKCLLEKK-------MHVKDADCSECYCVWCGRSSDLVSCK--SCKTLFCTTCVKRNISEACLSDEVQASCWQ 580 (1360)
Q Consensus 510 ~~~~C~~C~~~~~~~-------~~~~d~d~~~~~C~~C~~gg~l~~Cd--~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~ 580 (1360)
+|.+|..|.---+.+ .+..|.| |+..|+.|+..=.---|- .|-..||-+|++- ....++....-...+
T Consensus 20 RVNVCEhClV~nHpkCiVQSYLqWL~DsD-Y~pNC~LC~t~La~gdt~RLvCyhlfHW~Clne--raA~lPanTAPaGyq 96 (299)
T KOG3970|consen 20 RVNVCEHCLVANHPKCIVQSYLQWLQDSD-YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNE--RAANLPANTAPAGYQ 96 (299)
T ss_pred hhhHHHHHHhccCchhhHHHHHHHHhhcC-CCCCCceeCCccccCcceeehhhhhHHHHHhhH--HHhhCCCcCCCCccc
Confidence 477888885322222 2344555 455899997432222222 2889999999872 222333333345699
Q ss_pred eecCCch--hHHHHHH
Q 000672 581 CCCCSPS--LLKRLTS 594 (1360)
Q Consensus 581 C~~C~p~--~l~~L~~ 594 (1360)
|++|.-. |.-.|++
T Consensus 97 CP~Cs~eiFPp~Nlvs 112 (299)
T KOG3970|consen 97 CPCCSQEIFPPINLVS 112 (299)
T ss_pred CCCCCCccCCCccccc
Confidence 9999632 4444443
No 403
>COG0254 RpmE Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]
Probab=54.29 E-value=7.7 Score=36.11 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=33.9
Q ss_pred CCCceeeccCccccc--cccccccccccccCcchhhhhhcCcccCCCC
Q 000672 487 LSEKFYCTACNNVAI--EVHPHPILNVIVCKDCKCLLEKKMHVKDADC 532 (1360)
Q Consensus 487 ~~~~~~C~~Cg~~~~--~~~~HP~l~~~~C~~C~~~~~~~~~~~d~d~ 532 (1360)
..-.+.|.+||.... -...++.+.+-+|..|..||.-..-..|..|
T Consensus 11 ~~v~~~~~s~g~~f~~~ST~~~~~i~vdV~s~~HPFyTG~qk~~d~~G 58 (75)
T COG0254 11 RPVVFVCSSCGNEFTTRSTKGTDEINLDVCSKCHPFYTGKQKIVDTEG 58 (75)
T ss_pred ceEEEEeCCCCCEEEEEeccCCceEEEEeCCCCCCcCcCceeEeeccc
Confidence 556799999997632 3445678899999999999985555555444
No 404
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=54.13 E-value=37 Score=41.89 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=21.2
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYT 775 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ 775 (1360)
.+.+.|+--..|+|||-.+.++-..
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHH
Confidence 5689999999999999888876655
No 405
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=54.04 E-value=1.4e+02 Score=33.41 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=34.7
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEe----chhhHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT----PVNVLHNWKQE 802 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~----P~sLl~QW~~E 802 (1360)
+|.-.+|+-..|.|||..++.++....... ..++|++. |..++..+...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~---g~~vly~s~E~~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFSLEMSKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCceEEEeCCCCHHHHHHHHHHH
Confidence 345578899999999999888887766542 24788888 44456555433
No 406
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=53.73 E-value=84 Score=36.37 Aligned_cols=84 Identities=29% Similarity=0.380 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHhhh-------------HHHHHHHHHh--------HHHHHHHHHHHHHHHHHhcCCCchHHHHHH-
Q 000672 49 LTEEEIEELIAEFLEVES-------------KAAEAQEALE--------LESLVKLKNEVREELAQALHGDDLEAAVED- 106 (1360)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 106 (1360)
||+.++.++++-+.++|+ ++++|.+... ++...+.=...++||.+.+. +|. ..+.
T Consensus 146 LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~E--eL~-~~Eke 222 (269)
T PF05278_consen 146 LSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEE--ELK-QKEKE 222 (269)
T ss_pred hhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHH
Confidence 999999999888888874 4555544332 22222222233455544421 221 1233
Q ss_pred --HHHHHHHHHHHHHhhHHhHHHHHHHhhhc
Q 000672 107 --EMTVYKEQWEAALDELETESAHLLEQLDG 135 (1360)
Q Consensus 107 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (1360)
|+.+=..+|.+.|.+||.+++.|-..+..
T Consensus 223 ~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~ 253 (269)
T PF05278_consen 223 VKEIKERITEMKGRLGELEMESTRLSKTIKS 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444568999999999999998876543
No 407
>PF13173 AAA_14: AAA domain
Probab=53.56 E-value=28 Score=35.22 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=26.0
Q ss_pred CCCEEEEeCCcccCCcchHHHHHHhhc---ccceEEEEeCCCCC
Q 000672 873 GPDILVCDEAHMIKNTRADTTQALKQV---KCQRRIALTGSPLQ 913 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~Sk~skal~~L---ka~~RllLTGTPiq 913 (1360)
+..+||+||+|++.+. ...++.+ ....++++||+-..
T Consensus 61 ~~~~i~iDEiq~~~~~----~~~lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDW----EDALKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhccH----HHHHHHHHHhccCceEEEEccchH
Confidence 6778999999999753 3334433 23568999998643
No 408
>PRK14873 primosome assembly protein PriA; Provisional
Probab=53.54 E-value=56 Score=42.86 Aligned_cols=95 Identities=18% Similarity=0.131 Sum_probs=72.5
Q ss_pred cChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCC-CcEEEecCCCCHHHHHHHHHHHhC
Q 000672 1116 YSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKG-KDWYRLDGRTESSERQKLVERFNE 1194 (1360)
Q Consensus 1116 ~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~G-i~~~rLdGsts~~eR~~iI~~Fn~ 1194 (1360)
.|+|-+..++++......|..+||...-......+...|... .| ..+..+++..+..+|.+...+...
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~-----------f~~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRAL-----------LGAGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHH-----------cCCCcEEEECCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999999999999999898888863 23 678999999999999988888875
Q ss_pred CCCCCceEEEeecccccccCCccCCCEEEEEc
Q 000672 1195 PLNKRVKCTLISTRAGSLGINLHSANRVIIVD 1226 (1360)
Q Consensus 1195 ~~n~~v~VlLISTkAGgeGLNL~~An~VIi~D 1226 (1360)
+..+ ++|.|+++-. +-+..-.-||+-|
T Consensus 239 ---G~~~-IViGtRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 239 ---GQAR-VVVGTRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred ---CCCc-EEEEcceeEE-eccCCCCEEEEEc
Confidence 4444 4677765421 2233334444443
No 409
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=53.37 E-value=4.2 Score=31.20 Aligned_cols=30 Identities=20% Similarity=0.594 Sum_probs=22.2
Q ss_pred ccccCCCCceeecCCcccccchhhhcccCC
Q 000672 537 CVWCGRSSDLVSCKSCKTLFCTTCVKRNIS 566 (1360)
Q Consensus 537 C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~ 566 (1360)
|.+|.+......--.|...||..|+...+.
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH
Confidence 667777755555566999999999875543
No 410
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=53.30 E-value=5 Score=31.97 Aligned_cols=40 Identities=23% Similarity=0.614 Sum_probs=28.1
Q ss_pred ccccCCCC-ceeecCCcccccchhhhcccCCcccccccccCCCceeecCC
Q 000672 537 CVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 585 (1360)
Q Consensus 537 C~~C~~gg-~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 585 (1360)
|.+|.+.- ..+.-..|...||..|+...+.. +...|+.|.
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---------~~~~Cp~C~ 42 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---------GKNTCPLCR 42 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh---------CcCCCCCCC
Confidence 66776654 45555669999999999765432 356799985
No 411
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=53.08 E-value=2.1e+02 Score=32.18 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=32.8
Q ss_pred ceEEEeCCCchHHHHHHHHHHHHHHhc--------ccCCCceEEEe---chhhHHHHHHHHHH
Q 000672 754 GCILAHTMGLGKTFQVIAFLYTAMRSV--------NLGLRTALIVT---PVNVLHNWKQEFMK 805 (1360)
Q Consensus 754 GgILADeMGLGKTlqaIAlI~~ll~~~--------~~~~k~~LIV~---P~sLl~QW~~Ei~k 805 (1360)
-++|+-.-|.|||..++.+++...... ....+++|+++ |...+.+-...+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 468999999999999888877653211 11235677777 44444444444433
No 412
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=52.95 E-value=1.2e+02 Score=33.99 Aligned_cols=37 Identities=14% Similarity=0.416 Sum_probs=24.7
Q ss_pred CCCEEEEeCCcccCCcch---HHHHHHhhc-ccceEEEEeC
Q 000672 873 GPDILVCDEAHMIKNTRA---DTTQALKQV-KCQRRIALTG 909 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~S---k~skal~~L-ka~~RllLTG 909 (1360)
..|++|+|-.|.+.+... ..+..+..+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 689999999999987542 233334444 3455677766
No 413
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=52.93 E-value=64 Score=42.99 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=20.6
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTA 776 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~l 776 (1360)
...+.||.-+.|.|||..+-++....
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45788999999999998877765443
No 414
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=52.86 E-value=88 Score=40.28 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=23.1
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
..++..|+.-+.|.|||..|-+++..+..
T Consensus 36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 34455789999999999999888877643
No 415
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.85 E-value=5.2 Score=51.19 Aligned_cols=90 Identities=16% Similarity=0.337 Sum_probs=59.4
Q ss_pred eeeccCccccccccccccccccccCcchhhhhhcCcccC---CCCCcccccccCCCCceeecC---------------Cc
Q 000672 491 FYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKD---ADCSECYCVWCGRSSDLVSCK---------------SC 552 (1360)
Q Consensus 491 ~~C~~Cg~~~~~~~~HP~l~~~~C~~C~~~~~~~~~~~d---~d~~~~~C~~C~~gg~l~~Cd---------------~C 552 (1360)
-.|..|+...- -+++..-|..| ..|..-++.++ .-....+|..|.++-.++.|. +|
T Consensus 100 ~~C~~C~~~~~-----~~~~~~~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd 173 (669)
T KOG2231|consen 100 HSCHICDRRFR-----ALYNKKECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGD 173 (669)
T ss_pred hhcCccccchh-----hhcccCCCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCC
Confidence 67888876521 12234447777 44433333222 223345899999888887662 24
Q ss_pred c-------cccchhhhcccCCcccccccccCCCceeecCCc
Q 000672 553 K-------TLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 586 (1360)
Q Consensus 553 ~-------~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p 586 (1360)
| .--|..|..+.++...+-+-..-+.|.|.+|+-
T Consensus 174 ~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h~~chfC~~ 214 (669)
T KOG2231|consen 174 PDDESCRGHPLCKFCHERFLDDDELYRHLRFDHEFCHFCDY 214 (669)
T ss_pred CccccccCCccchhhhhhhccHHHHHHhhccceeheeecCc
Confidence 4 345888999999999888777889999999964
No 416
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.83 E-value=61 Score=38.52 Aligned_cols=55 Identities=9% Similarity=0.078 Sum_probs=35.0
Q ss_pred HHHHHhhhcCCCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhh
Q 000672 863 AREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVD 924 (1360)
Q Consensus 863 ~~~i~~ll~~~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~ 924 (1360)
..-+...+..++|++|++|.+- -...-+++.+.+.| .-=+|....++..++.-+.
T Consensus 207 ~dll~aalR~rPd~IivgEvrg-----~e~~~~~~a~~tGh--~~isT~ha~s~~~~~~rl~ 261 (312)
T COG0630 207 EDLLRAALRQRPDYIIVGELRG-----REAFVLFQAMQTGH--GTISTIHADSPELVLDRLT 261 (312)
T ss_pred HHHHHHHHhcCCCeEEEeeeec-----HHHHHHHHHHhcCC--CceeEEecCCHHHHHHHHh
Confidence 3445566777999999999873 23455566666777 3334666666666554433
No 417
>PRK05973 replicative DNA helicase; Provisional
Probab=52.75 E-value=1.3e+02 Score=34.35 Aligned_cols=37 Identities=32% Similarity=0.356 Sum_probs=28.8
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEe
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 791 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~ 791 (1360)
+|.-.+++-..|.|||+-++-|+......+ .+++++.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G----e~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSG----RTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcC----CeEEEEE
Confidence 455678899999999999998887765432 4778887
No 418
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=52.52 E-value=57 Score=40.09 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=27.9
Q ss_pred CCCEEEEeCCcccCCcc---hHHHHHHhhc-ccceEEEEeC--CCCC
Q 000672 873 GPDILVCDEAHMIKNTR---ADTTQALKQV-KCQRRIALTG--SPLQ 913 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~---Sk~skal~~L-ka~~RllLTG--TPiq 913 (1360)
..|++++|-.|.+.+.. -..+..++.+ .....++||+ +|-+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 56889999999987753 2344445555 3444899998 6744
No 419
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.51 E-value=4.9 Score=46.11 Aligned_cols=40 Identities=28% Similarity=0.652 Sum_probs=32.8
Q ss_pred cccccCCCCceeecCCcccccchhhhcccCCcccccccccCCCceeecCC
Q 000672 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 585 (1360)
Q Consensus 536 ~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 585 (1360)
.|..|-+...--.|--|...||-.||.-..+... -||.|.
T Consensus 241 kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~----------eCPlCR 280 (293)
T KOG0317|consen 241 KCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA----------ECPLCR 280 (293)
T ss_pred ceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc----------CCCccc
Confidence 7899999988889999999999999976655441 199995
No 420
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=52.44 E-value=3 Score=53.52 Aligned_cols=43 Identities=21% Similarity=0.552 Sum_probs=28.8
Q ss_pred cccccCCCCceeecCCcccccchhhhcccCCcccccccccCCCceeecCCch
Q 000672 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 536 ~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
+|.+|...=.=..=..|..+||..|+.+-.+... =.||-|...
T Consensus 645 kCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRq---------RKCP~Cn~a 687 (698)
T KOG0978|consen 645 KCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQ---------RKCPKCNAA 687 (698)
T ss_pred eCCCccCchhhHHHHhcchHHHHHHHHHHHHHhc---------CCCCCCCCC
Confidence 5776664333233346999999999987766553 359999643
No 421
>CHL00176 ftsH cell division protein; Validated
Probab=52.35 E-value=83 Score=41.12 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=20.7
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYT 775 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ 775 (1360)
...|.+|.-+.|+|||..|=++...
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999888777543
No 422
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=52.31 E-value=63 Score=43.98 Aligned_cols=100 Identities=8% Similarity=-0.024 Sum_probs=71.1
Q ss_pred ccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhC
Q 000672 1115 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1194 (1360)
Q Consensus 1115 ~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~ 1194 (1360)
..|||-.+.+-.+-.....|.+++|.+..+..+..+...+...+. ..++.+..++|.++..++.++++.+..
T Consensus 481 TGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~--------~~~i~v~~Lsg~~~~~e~~~~~~~l~~ 552 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFA--------NFPVTIELLSRFRSAKEQNEILKELAS 552 (926)
T ss_pred CCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhc--------cCCcEEEEEeccccHHHHHHHHHHHHc
Confidence 467888766554444445578999999999988888887775321 136778889999999999999999885
Q ss_pred CCCCCceEEEeecccccccCCccCCCEEEEE
Q 000672 1195 PLNKRVKCTLISTRAGSLGINLHSANRVIIV 1225 (1360)
Q Consensus 1195 ~~n~~v~VlLISTkAGgeGLNL~~An~VIi~ 1225 (1360)
+.+.|++.+.......+.+.....||+=
T Consensus 553 ---g~~dIVIGTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 553 ---GKIDILIGTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred ---CCceEEEchHHHhhCCCCcccCCEEEee
Confidence 3455555555555556677666666553
No 423
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=50.96 E-value=97 Score=37.70 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=38.9
Q ss_pred cccCcchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 714 VRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 714 v~vP~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
-.+|.. ..-|.-|+..+...+...+ .+..+.+.++.-.+|+|||.++--++..+...
T Consensus 13 ~~iP~~--l~~Re~ei~~l~~~l~~~~-------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 13 DYIPEE--LPHREEEINQLASFLAPAL-------RGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred CCCccc--ccccHHHHHHHHHHHHHHh-------cCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 345555 3456777777766654432 23456679999999999999887777666443
No 424
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=50.42 E-value=4.2 Score=32.64 Aligned_cols=38 Identities=26% Similarity=0.706 Sum_probs=23.8
Q ss_pred ccccCCCC-ceeecCCcccccchhhhcccCCcccccccccCCCceeecC
Q 000672 537 CVWCGRSS-DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 584 (1360)
Q Consensus 537 C~~C~~gg-~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C 584 (1360)
|.+|.+-- +.+....|..+||..|+...+.. ...|++|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~----------~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK----------NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC----------TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC----------cCCCcCC
Confidence 45555333 33357789999999998755322 2678877
No 425
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=50.37 E-value=5.3 Score=45.33 Aligned_cols=40 Identities=28% Similarity=0.611 Sum_probs=29.9
Q ss_pred CCCceeecCCcccccchhhhcccCCcccccccccCCCceeecC
Q 000672 542 RSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 584 (1360)
Q Consensus 542 ~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C 584 (1360)
....+|||..|-.++|..||.... .+..+...-.|+|.-|
T Consensus 275 r~~S~I~C~~C~~~~HP~Ci~M~~---elv~~~KTY~W~C~~C 314 (381)
T KOG1512|consen 275 RRNSWIVCKPCATRPHPYCVAMIP---ELVGQYKTYFWKCSSC 314 (381)
T ss_pred hhccceeecccccCCCCcchhcCH---HHHhHHhhcchhhccc
Confidence 345789999999999999997442 2222445668999999
No 426
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=49.96 E-value=2.8e+02 Score=33.07 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=23.7
Q ss_pred cceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEe
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 791 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~ 791 (1360)
.-..|.-..|.|||.++..+...+... .++++|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~----g~~V~Li~ 149 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQ----GKKVLLAA 149 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc----CCeEEEEe
Confidence 344566799999998887777665432 24666665
No 427
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=49.48 E-value=5.3e+02 Score=34.57 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=40.1
Q ss_pred CCEEEEEcCCCChhHHHHHhHhHhhcCCC---CcEEEEEEecCCCHHHHHHHHHHHHHHHHHH-Hhccc
Q 000672 1219 ANRVIIVDGSWNPTYDLQAIYRAWRYGQT---KPVFAYRLMAHGTMEEKIYKRQVTKEGLAAR-VVDRQ 1283 (1360)
Q Consensus 1219 An~VIi~D~~WNPs~~~QAiGRa~RiGQk---K~V~VyrLva~gTIEEkI~~rq~~K~~La~~-Vvd~~ 1283 (1360)
-..||+|++.-++.+ ++-+++.+ +...||.++..+|+||.-|--..++.+.+-. +++..
T Consensus 545 P~yvi~y~~~~~~vR------qiEvYka~~p~~~lkVYfl~y~~S~EeQ~yltSirREk~sFe~LIre~ 607 (892)
T KOG0442|consen 545 PRYVIMYESDLTFVR------QIEVYKATRPFRSLKVYFLYYGESTEEQRYLTSIRREKASFEKLIREK 607 (892)
T ss_pred CceEEEEcCCCCcee------eeeeeeccCCCCCceEEEEEecCchHHHHHHHHHHHhHHHHHHHHhhc
Confidence 346899998766543 33444444 4466999999999999888777776665544 44443
No 428
>PRK08760 replicative DNA helicase; Provisional
Probab=49.25 E-value=1.8e+02 Score=36.72 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=38.4
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHHHh
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW 806 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~k~ 806 (1360)
+|.=.|||.-+|.|||.-++.++....... ..+++++..---..||...+...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~---g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKS---KKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhc---CCceEEEeccCCHHHHHHHHHHh
Confidence 344578999999999988888876654221 24889998877777777776543
No 429
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=49.22 E-value=51 Score=38.50 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.5
Q ss_pred ceEEEeCCCchHHHHHHHHHHHHHHhc
Q 000672 754 GCILAHTMGLGKTFQVIAFLYTAMRSV 780 (1360)
Q Consensus 754 GgILADeMGLGKTlqaIAlI~~ll~~~ 780 (1360)
-.+|.-+.|.|||..|.++...+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 488899999999999999988876443
No 430
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.05 E-value=4.8 Score=43.15 Aligned_cols=33 Identities=21% Similarity=0.706 Sum_probs=23.8
Q ss_pred ceeecCCcccccchhhhcccCCcccccccccCCCceeecCCch
Q 000672 545 DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 545 ~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
.+..--+|..+||..||+..+... =.|+.|.-+
T Consensus 144 k~~vsTkCGHvFC~~Cik~alk~~----------~~CP~C~kk 176 (187)
T KOG0320|consen 144 KVPVSTKCGHVFCSQCIKDALKNT----------NKCPTCRKK 176 (187)
T ss_pred ccccccccchhHHHHHHHHHHHhC----------CCCCCcccc
Confidence 333456799999999998665433 469999643
No 431
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.91 E-value=9.2 Score=45.67 Aligned_cols=53 Identities=19% Similarity=0.434 Sum_probs=33.2
Q ss_pred CCcccccccCCCCceee-----c---CCcccccchhhhcccCCcccccccccCCCceeecCCch
Q 000672 532 CSECYCVWCGRSSDLVS-----C---KSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 532 ~~~~~C~~C~~gg~l~~-----C---d~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
..+..|.+|.+++.-.- = -+|..+||.+|+...-..... ...-.=.||+|.-.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~---~~~~sksCP~CRv~ 219 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF---ESKTSKSCPFCRVP 219 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc---ccccccCCCcccCc
Confidence 55679999998764333 1 459999999999855422211 01112459999544
No 432
>PRK10867 signal recognition particle protein; Provisional
Probab=48.88 E-value=1.4e+02 Score=37.29 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=30.9
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec----hhhHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP----VNVLHNWKQ 801 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P----~sLl~QW~~ 801 (1360)
+.-.+++-..|.|||.++.-++.++.... .+++++|+= +....||..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~---G~kV~lV~~D~~R~aa~eQL~~ 150 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKK---KKKVLLVAADVYRPAAIEQLKT 150 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhc---CCcEEEEEccccchHHHHHHHH
Confidence 34567889999999999888877765441 235666653 234556643
No 433
>CHL00206 ycf2 Ycf2; Provisional
Probab=48.77 E-value=58 Score=46.88 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 799 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW 799 (1360)
..++|.+|.-++|+|||+.|=|++... .-|.+-|....++..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es-------~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS-------YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc-------CCceEEEEHHHHhhcc
Confidence 356799999999999998887776543 1266666666677666
No 434
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.65 E-value=1.2e+02 Score=39.63 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
.-++..|+.-..|.|||..|..|...+.
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456688999999999999888877764
No 435
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=48.56 E-value=5.6 Score=32.73 Aligned_cols=28 Identities=32% Similarity=0.810 Sum_probs=17.5
Q ss_pred CcccccchhhhcccCCcccccccccCCCceeecC
Q 000672 551 SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCC 584 (1360)
Q Consensus 551 ~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C 584 (1360)
.|..+||..||........ ...+.|+.|
T Consensus 15 ~CGH~FC~~Cl~~~~~~~~------~~~~~CP~C 42 (42)
T PF15227_consen 15 PCGHSFCRSCLERLWKEPS------GSGFSCPEC 42 (42)
T ss_dssp SSSSEEEHHHHHHHHCCSS------SST---SSS
T ss_pred CCcCHHHHHHHHHHHHccC------CcCCCCcCC
Confidence 3899999999987654332 223889887
No 436
>PTZ00396 Casein kinase II subunit beta; Provisional
Probab=48.52 E-value=8.4 Score=43.98 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=26.1
Q ss_pred CcccccchhhhcccCCcccccccccCCCceeecCC
Q 000672 551 SCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 585 (1360)
Q Consensus 551 ~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 585 (1360)
.|||++|..|.-.++|...... ...-+++|+.|.
T Consensus 122 ~CPRv~C~~q~~LPvGlSd~~g-~~~VKlyCP~C~ 155 (251)
T PTZ00396 122 HCPRVLCEGQNVLPIGLSDVLK-TSRVKVYCPRCQ 155 (251)
T ss_pred CCCCccCCCCcccccccCCCcC-cCceeEeCCCch
Confidence 4999999999888888765542 344568999994
No 437
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.44 E-value=2.7e+02 Score=34.66 Aligned_cols=75 Identities=13% Similarity=0.277 Sum_probs=45.7
Q ss_pred CCCCEEEEeCCcccCCcchHHHHHHhhc--------ccceEEEEeCCCCCCchhhHHhhhhhhccC-----------CCC
Q 000672 872 DGPDILVCDEAHMIKNTRADTTQALKQV--------KCQRRIALTGSPLQNNLMEYYCMVDFVREG-----------FLG 932 (1360)
Q Consensus 872 ~~fdlVIlDEAH~IKN~~Sk~skal~~L--------ka~~RllLTGTPiqNnl~EL~sLL~fL~p~-----------~lg 932 (1360)
.++|+||+|=+-+.-+.. .....+..+ .....++|+||-=++.+.+++..+..+.+. .+|
T Consensus 298 ~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~G 376 (432)
T PRK12724 298 DGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLG 376 (432)
T ss_pred CCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCcc
Confidence 478999999876553222 222222222 224678999998877777777776666544 234
Q ss_pred ChHHHHhhccCCccc
Q 000672 933 SSHEFRNRFQNPIEN 947 (1360)
Q Consensus 933 s~~eF~~~f~~pi~~ 947 (1360)
..-.+...+..|+..
T Consensus 377 ~il~i~~~~~lPI~y 391 (432)
T PRK12724 377 SFLELADTYSKSFTY 391 (432)
T ss_pred HHHHHHHHHCCCEEE
Confidence 444556666777654
No 438
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=48.37 E-value=5 Score=36.81 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=19.7
Q ss_pred cccccCC----CCc--eeecC--CcccccchhhhcccCCcccccc-cccCCCceeecCCc
Q 000672 536 YCVWCGR----SSD--LVSCK--SCKTLFCTTCVKRNISEACLSD-EVQASCWQCCCCSP 586 (1360)
Q Consensus 536 ~C~~C~~----gg~--l~~Cd--~C~~~fc~~Cl~~~~~~~~~~~-~~~~~~W~C~~C~p 586 (1360)
.|.+|-. .++ .+.|+ .|...||..||...+-...-.+ ....-.+.||.|..
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 5666643 232 37898 5999999999986653221111 11123378999964
No 439
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.36 E-value=2.1e+02 Score=38.19 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=38.4
Q ss_pred CCCEEEEeCCcccCCcchHHHHHHhhc-----ccceEEEEeCCCCCCchhhHHhhhhhh---ccC-----------CCCC
Q 000672 873 GPDILVCDEAHMIKNTRADTTQALKQV-----KCQRRIALTGSPLQNNLMEYYCMVDFV---REG-----------FLGS 933 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~Sk~skal~~L-----ka~~RllLTGTPiqNnl~EL~sLL~fL---~p~-----------~lgs 933 (1360)
.+|+||||=+=+.-+. ......+..+ .....++|++|--...+.++...++.+ .+. .+|.
T Consensus 263 ~~D~VLIDTAGRs~~d-~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~ 341 (767)
T PRK14723 263 DKHLVLIDTVGMSQRD-RNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGP 341 (767)
T ss_pred CCCEEEEeCCCCCccC-HHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccH
Confidence 5577888877655432 2233333333 234567778886444555555444332 111 2344
Q ss_pred hHHHHhhccCCccc
Q 000672 934 SHEFRNRFQNPIEN 947 (1360)
Q Consensus 934 ~~eF~~~f~~pi~~ 947 (1360)
.-.+...+..|+..
T Consensus 342 iL~i~~~~~lPI~y 355 (767)
T PRK14723 342 ALDTVIRHRLPVHY 355 (767)
T ss_pred HHHHHHHHCCCeEE
Confidence 44556666667654
No 440
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.35 E-value=6.8 Score=44.33 Aligned_cols=48 Identities=23% Similarity=0.589 Sum_probs=31.7
Q ss_pred CCCCcccccccCCCCceeec-----C-----Ccccccchhhhccc--CCcccccccccCCCceeecCCch
Q 000672 530 ADCSECYCVWCGRSSDLVSC-----K-----SCKTLFCTTCVKRN--ISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 530 ~d~~~~~C~~C~~gg~l~~C-----d-----~C~~~fc~~Cl~~~--~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
...+|+-|.+||+.=+.-.= + .|..+||..||+-. +|.. =.||.|..+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKk----------qtCPYCKek 279 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKK----------QTCPYCKEK 279 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCC----------CCCchHHHH
Confidence 35567789999865443321 1 29999999999843 3332 249999655
No 441
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=48.24 E-value=1.4e+02 Score=37.36 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=34.7
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK 805 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~k 805 (1360)
++.-.+|+-++|.|||..++.++..+... .+++|.|..-.-..|......+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~----g~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN----QMKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEECcCCHHHHHHHHHH
Confidence 34557889999999998888877665432 2478888765555555544433
No 442
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=48.18 E-value=90 Score=41.51 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=21.8
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAM 777 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll 777 (1360)
...+.||.-+.|.|||..+-++...+.
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999988777766553
No 443
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=47.65 E-value=4.4e+02 Score=32.90 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=24.4
Q ss_pred ceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec
Q 000672 754 GCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 792 (1360)
Q Consensus 754 GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P 792 (1360)
-.+++-..|.|||-++.-+...+... + +++++|+-
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~---G-~kV~lV~~ 136 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRK---G-FKPCLVCA 136 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---C-CCEEEEcC
Confidence 35678889999998888777665432 2 36666664
No 444
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=47.47 E-value=7.5 Score=31.06 Aligned_cols=34 Identities=21% Similarity=0.564 Sum_probs=16.9
Q ss_pred ceeecCCcccccchhhhcccCCcccccccccCCCceeecCC
Q 000672 545 DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 585 (1360)
Q Consensus 545 ~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 585 (1360)
.|+.|++|.-++|..|-.... ....+.|.|-.|.
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~-------~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSE-------VPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS---------SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhCCccc-------CCCCCcEECCcCC
Confidence 589999999999999954322 2233359998873
No 445
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=46.92 E-value=61 Score=35.36 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=33.2
Q ss_pred cCCCCEEEEeCCcccCCcc----hHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhh
Q 000672 871 QDGPDILVCDEAHMIKNTR----ADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVD 924 (1360)
Q Consensus 871 ~~~fdlVIlDEAH~IKN~~----Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~ 924 (1360)
...||+||+||.=..-+.. ..+...+..-...--++|||--.+..+.|+..++.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~VT 170 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQIT 170 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCeee
Confidence 4589999999986554432 33444444444555799999755544444444433
No 446
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=46.06 E-value=53 Score=43.27 Aligned_cols=84 Identities=19% Similarity=0.211 Sum_probs=70.8
Q ss_pred ccccccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHH
Q 000672 1111 YKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVE 1190 (1360)
Q Consensus 1111 ~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~ 1190 (1360)
...+..|+|.++.++++......|..+||-..-......+...|... .|.++..++.+.+..+|...-.
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~r-----------Fg~~v~vlHS~Ls~~er~~~W~ 290 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKAR-----------FGAKVAVLHSGLSPGERYRVWR 290 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHH-----------hCCChhhhcccCChHHHHHHHH
Confidence 45678899999999999999999999999999998888888888763 5788999999999999999999
Q ss_pred HHhCCCCCCceEEEeeccc
Q 000672 1191 RFNEPLNKRVKCTLISTRA 1209 (1360)
Q Consensus 1191 ~Fn~~~n~~v~VlLISTkA 1209 (1360)
+... +..+| +|.|+.
T Consensus 291 ~~~~---G~~~v-VIGtRS 305 (730)
T COG1198 291 RARR---GEARV-VIGTRS 305 (730)
T ss_pred HHhc---CCceE-EEEech
Confidence 9886 55664 555544
No 447
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=45.98 E-value=1.7e+02 Score=33.49 Aligned_cols=47 Identities=30% Similarity=0.497 Sum_probs=35.1
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEe----chhhHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT----PVNVLHNWKQ 801 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~----P~sLl~QW~~ 801 (1360)
.+.-.++.-.+|.|||+-++-|+......+ .|+|.|. |..++.++..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~g----e~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREG----EPVLYVSTEESPEELLENARS 72 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcC----CcEEEEEecCCHHHHHHHHHH
Confidence 456688899999999999999998887663 3788887 3445555433
No 448
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=45.55 E-value=4.8 Score=51.94 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=45.3
Q ss_pred CCCCCcccccccCCCCceeecCCcccccchhhhcccCCcccccccccCCCceeecCCch
Q 000672 529 DADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 529 d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
-++..+..|+.|.+++.++.|+.|.|.++.+|+.+ ++.. ...-+.|.|.-|+-+
T Consensus 501 ~e~~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~-~P~K----te~i~~~~~~~~Q~~ 554 (696)
T KOG0383|consen 501 LEEFHDISCEEQIKKLHLLLCPHMLRRLKLDVLKP-MPLK----TELIGRVELSPCQKK 554 (696)
T ss_pred hhhcchhhHHHHHHhhccccCchhhhhhhhhhccC-CCcc----ceeEEEEecCHHHHH
Confidence 46788889999999999999999999999999987 4544 334578999999544
No 449
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=45.55 E-value=27 Score=46.78 Aligned_cols=116 Identities=16% Similarity=0.267 Sum_probs=69.5
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHH----HHHHHHHHhCCCCCCCeEEEEecCcch
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLH----NWKQEFMKWRPSELKPLRVFMLEDVSR 824 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~----QW~~Ei~k~~p~~~~~l~V~~~~g~~~ 824 (1360)
+...+.++.+++|.|||+.+-..+...+... +.+++.+|+| +.|+. .|..-+. .| .+++....+...
T Consensus 941 ~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--p~~kvvyIap~kalvker~~Dw~~r~~--~~----g~k~ie~tgd~~ 1012 (1230)
T KOG0952|consen 941 HTDLNFLLGAPTGSGKTVVAELAIFRALSYY--PGSKVVYIAPDKALVKERSDDWSKRDE--LP----GIKVIELTGDVT 1012 (1230)
T ss_pred ecchhhhhcCCccCcchhHHHHHHHHHhccC--CCccEEEEcCCchhhcccccchhhhcc--cC----CceeEeccCccC
Confidence 3456788999999999987655544443333 3468999999 44544 4655442 22 256666555433
Q ss_pred hHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHHHhhhcCCCCEEEEeCCcccCCc
Q 000672 825 DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNT 888 (1360)
Q Consensus 825 ~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i~~ll~~~fdlVIlDEAH~IKN~ 888 (1360)
..-.. ....+++|||....-..+. .+..+.+ -..+.++|+||.|.++..
T Consensus 1013 pd~~~-----v~~~~~~ittpek~dgi~R--sw~~r~~--------v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1013 PDVKA-----VREADIVITTPEKWDGISR--SWQTRKY--------VQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred CChhh-----eecCceEEcccccccCccc--cccchhh--------hccccceeecccccccCC
Confidence 32111 2456899999887643321 1111111 125677999999988654
No 450
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=45.16 E-value=24 Score=43.18 Aligned_cols=58 Identities=16% Similarity=0.430 Sum_probs=39.4
Q ss_pred cccccCCCCceeecCCcccccchhhhcccC--Cccc--cccc-ccCCCceeecCCchhHHHHHHHHHhhhcC
Q 000672 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNI--SEAC--LSDE-VQASCWQCCCCSPSLLKRLTSELGRAMGS 602 (1360)
Q Consensus 536 ~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~--~~~~--~~~~-~~~~~W~C~~C~p~~l~~L~~~~~~~~~~ 602 (1360)
-|.| +-||.|...=|..|-.+.- |++. ...+ ..+...+|..|+... .|+....+++.-
T Consensus 143 ~~~W-------i~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~s--eLlG~vk~vf~~ 205 (446)
T PF07227_consen 143 TCSW-------IGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTS--ELLGFVKKVFQT 205 (446)
T ss_pred CeeE-------EeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChh--hHHHHHHHHHHH
Confidence 6777 7789999999999987643 3332 1111 245679999997653 566666666644
No 451
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=44.99 E-value=1.8e+02 Score=34.59 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
.-++..++.-+.|.||+..|.+|+..++..
T Consensus 24 rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 24 RIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 446788999999999999999998887643
No 452
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=44.70 E-value=8.1 Score=39.89 Aligned_cols=29 Identities=34% Similarity=0.952 Sum_probs=23.8
Q ss_pred ccccccCCCCceeecCCcccccc-hhhhccc
Q 000672 535 CYCVWCGRSSDLVSCKSCKTLFC-TTCVKRN 564 (1360)
Q Consensus 535 ~~C~~C~~gg~l~~Cd~C~~~fc-~~Cl~~~ 564 (1360)
-+|.||| --...+|-+|...|| +.|+..+
T Consensus 119 ~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~H 148 (156)
T KOG3362|consen 119 KFCAVCG-YDSKYSCVNCGTKYCSVRCLKTH 148 (156)
T ss_pred hhhhhcC-CCchhHHHhcCCceeechhhhhc
Confidence 4899999 556889999999999 7887644
No 453
>PRK12377 putative replication protein; Provisional
Probab=44.61 E-value=92 Score=35.81 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=31.2
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 800 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~ 800 (1360)
..+.+|.-..|.|||-.+.|+...+...+ .+++++.-..++....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g----~~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKG----RSVIVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC----CCeEEEEHHHHHHHHH
Confidence 45788999999999999999888876432 2455554444555443
No 454
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=44.28 E-value=70 Score=42.49 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=20.1
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYT 775 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ 775 (1360)
..+.|.+|.-+.|.|||..+-++...
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHH
Confidence 35678999999999999776665443
No 455
>PRK06904 replicative DNA helicase; Validated
Probab=44.22 E-value=2.4e+02 Score=35.53 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=35.9
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFM 804 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~ 804 (1360)
+|.=.|||.-+|+|||.-++.++...... ...+++++..---..++...+.
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~---~g~~Vl~fSlEMs~~ql~~Rll 270 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMA---SEKPVLVFSLEMPAEQIMMRML 270 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHh---cCCeEEEEeccCCHHHHHHHHH
Confidence 44557899999999998887776554322 1358999987666666666554
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=44.08 E-value=1.5e+02 Score=32.48 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=17.4
Q ss_pred eEEEeCCCchHHHHHHHHHHHH
Q 000672 755 CILAHTMGLGKTFQVIAFLYTA 776 (1360)
Q Consensus 755 gILADeMGLGKTlqaIAlI~~l 776 (1360)
.+++-.+|.|||..+-+++..+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5778899999998877766554
No 457
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=44.00 E-value=1.6e+02 Score=29.10 Aligned_cols=81 Identities=27% Similarity=0.448 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhh
Q 000672 56 ELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALH-GDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLD 134 (1360)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (1360)
..|++++++-.+-.++|-.+ +.|..-..++..++++... |.+.+..++ |+. +....+.+||.+...+.++|+
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~--e~lr~~rN~~sk~I~~~~~~~~~~~~l~~-e~~----~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQEL--EELRAERNELSKEIGKLKKAGEDAEELKA-EVK----ELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCHTTCCTHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHhhCcccHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888887766 4688888999999998875 455554443 444 456678888888888888888
Q ss_pred ccCCCchhH
Q 000672 135 GAGIELPSL 143 (1360)
Q Consensus 135 ~~~~~~~~~ 143 (1360)
..-..||.|
T Consensus 99 ~~l~~iPNi 107 (108)
T PF02403_consen 99 ELLLSIPNI 107 (108)
T ss_dssp HHHCTS---
T ss_pred HHHHcCCCC
Confidence 877777765
No 458
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.85 E-value=2.5e+02 Score=34.50 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=31.1
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec--h--hhHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP--V--NVLHNWKQEF 803 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P--~--sLl~QW~~Ei 803 (1360)
+.-.+++-..|.|||-++..+...+...+ .++.+|+- - .-+.||..-.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g----~~V~lItaDtyR~gAveQLk~ya 257 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQN----RTVGFITTDTFRSGAVEQFQGYA 257 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCCccCccHHHHHHHHh
Confidence 44566788999999988888776654332 35666653 2 2366776543
No 459
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=43.84 E-value=8.2 Score=35.68 Aligned_cols=26 Identities=19% Similarity=0.602 Sum_probs=19.1
Q ss_pred CCcccccchhhhcccCCcccccccccCCCceeecCC
Q 000672 550 KSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 585 (1360)
Q Consensus 550 d~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 585 (1360)
..|...||..||.+.+... ..||+|.
T Consensus 48 ~~C~H~FH~~Ci~~Wl~~~----------~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQWLKQN----------NTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHHHHTTS----------SB-TTSS
T ss_pred cccCCCEEHHHHHHHHhcC----------CcCCCCC
Confidence 4599999999998765433 3899994
No 460
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=43.66 E-value=13 Score=32.90 Aligned_cols=49 Identities=18% Similarity=0.484 Sum_probs=31.8
Q ss_pred ceeeccCccccccccccccccccccCcchhhhhhcCcccCCCCCcccccccCCCCceeecCCcc
Q 000672 490 KFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCK 553 (1360)
Q Consensus 490 ~~~C~~Cg~~~~~~~~HP~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~ 553 (1360)
.-.||+||..+...- ....-.|++| ..-.--.|.-|..-|...-|.+|.
T Consensus 9 ~~~CtSCg~~i~p~e---~~v~F~CPnC------------Ge~~I~Rc~~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGE---TAVKFPCPNC------------GEVEIYRCAKCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCC---ceeEeeCCCC------------CceeeehhhhHHHcCCceECCCcC
Confidence 458999998642210 1123458888 111222699999999999998885
No 461
>PHA00350 putative assembly protein
Probab=43.20 E-value=47 Score=40.69 Aligned_cols=15 Identities=47% Similarity=0.569 Sum_probs=12.3
Q ss_pred CEEEEeCCcccCCcc
Q 000672 875 DILVCDEAHMIKNTR 889 (1360)
Q Consensus 875 dlVIlDEAH~IKN~~ 889 (1360)
.+|||||||++-+..
T Consensus 83 aLIViDEaq~~~p~r 97 (399)
T PHA00350 83 ALYVIDEAQMIFPKR 97 (399)
T ss_pred CEEEEECchhhcCCC
Confidence 589999999986643
No 462
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=43.08 E-value=1.3e+02 Score=37.57 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=22.8
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
.++..|+.-+.|.|||..|.+++..+..
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3456788999999999999888877753
No 463
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=42.98 E-value=1.7e+02 Score=36.45 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=25.9
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEe
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVT 791 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~ 791 (1360)
+.-.+++-..|.|||.++.-++.++.... + +++++|.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~--g-~kV~lV~ 135 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQ--G-KKVLLVA 135 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhC--C-CeEEEEe
Confidence 34578899999999999888877754221 2 3556655
No 464
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.50 E-value=10 Score=46.79 Aligned_cols=47 Identities=17% Similarity=0.519 Sum_probs=34.7
Q ss_pred cccccccCCCCceeecCCcccccchhhhcccCCcccccccccCCCceeecCC
Q 000672 534 ECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCS 585 (1360)
Q Consensus 534 ~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~ 585 (1360)
+.+|.+|-..-..-+=-.|...||..||..-+..+.. ...=.|++|-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~-----~~~~~CPiC~ 232 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAI-----KGPCSCPICR 232 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcc-----cCCccCCchh
Confidence 5689999888877777779999999999865554411 2334588883
No 465
>PRK10689 transcription-repair coupling factor; Provisional
Probab=42.41 E-value=1.1e+02 Score=42.71 Aligned_cols=99 Identities=7% Similarity=-0.032 Sum_probs=67.3
Q ss_pred ccChhHHHHHHHHHhhhcCCCeEEEEeCchhhHHHHHHHHhcCCCCCCCcccccCCCcEEEecCCCCHHHHHHHHHHHhC
Q 000672 1115 DYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNE 1194 (1360)
Q Consensus 1115 ~~S~Kl~~L~eiL~~~~~~g~KVLIFSQf~~tLdlLe~~L~~l~~~~~~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~ 1194 (1360)
..+||-.+.+..+-.....|.+++|-+..+..+..+...+...+. ..++.+..+.|..+..++..++.....
T Consensus 630 TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~--------~~~v~i~~l~g~~s~~e~~~il~~l~~ 701 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFA--------NWPVRIEMLSRFRSAKEQTQILAEAAE 701 (1147)
T ss_pred CCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhc--------cCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 457888765544433445688999999999888887777765221 125677889999999999999888875
Q ss_pred CCCCCceEEEeecccccccCCccCCCEEEE
Q 000672 1195 PLNKRVKCTLISTRAGSLGINLHSANRVII 1224 (1360)
Q Consensus 1195 ~~n~~v~VlLISTkAGgeGLNL~~An~VIi 1224 (1360)
+.+.|++.+.......+++.....||+
T Consensus 702 ---g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 702 ---GKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred ---CCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 344556666555555566655555544
No 466
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=42.28 E-value=13 Score=37.70 Aligned_cols=42 Identities=26% Similarity=0.737 Sum_probs=27.9
Q ss_pred cccccCCC-----CceeecCCcccccchhhhcccCCcccccccccCCCceeecCCc
Q 000672 536 YCVWCGRS-----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 586 (1360)
Q Consensus 536 ~C~~C~~g-----g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p 586 (1360)
.|..|+.. +.-..|-.|.+.+|..|-.. ......|.|.+|.-
T Consensus 56 ~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 56 HCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQK 102 (118)
T ss_dssp B-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHH
T ss_pred chhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHH
Confidence 56666542 22357899999999999543 22346799999943
No 467
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=42.22 E-value=94 Score=43.87 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=35.7
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 799 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW 799 (1360)
.+.+.++...-|+|||.+.+.-+..++..+ .....+|||+=+....++
T Consensus 13 ~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e 60 (1232)
T TIGR02785 13 RGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAARE 60 (1232)
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHH
Confidence 467889999999999999888777665544 334578999876655544
No 468
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=42.17 E-value=1.1e+02 Score=36.45 Aligned_cols=26 Identities=31% Similarity=0.361 Sum_probs=20.8
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTA 776 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~l 776 (1360)
.+.+.||+-+-|+|||...|-+..++
T Consensus 88 ~g~~~~~~gdsg~GKttllL~l~Ial 113 (402)
T COG3598 88 KGYVSILYGDSGVGKTTLLLYLCIAL 113 (402)
T ss_pred cCeeEEEecCCcccHhHHHHHHHHHH
Confidence 57789999999999998777665544
No 469
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=41.93 E-value=17 Score=45.58 Aligned_cols=21 Identities=24% Similarity=0.833 Sum_probs=17.1
Q ss_pred cccccCCCCceeecCCccccc
Q 000672 536 YCVWCGRSSDLVSCKSCKTLF 556 (1360)
Q Consensus 536 ~C~~C~~gg~l~~Cd~C~~~f 556 (1360)
.|.-|++-|..+-|+.|.+.|
T Consensus 70 ~c~~c~G~gkv~~c~~cG~~~ 90 (715)
T COG1107 70 TCPECGGTGKVLTCDICGDII 90 (715)
T ss_pred ecccCCCceeEEeecccccee
Confidence 688888888888888887665
No 470
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=41.76 E-value=2.2e+02 Score=42.22 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=42.6
Q ss_pred hchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHH
Q 000672 723 KLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHN 798 (1360)
Q Consensus 723 ~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~Q 798 (1360)
.|-+-|+++|..++. +...-.||--.-|.|||-++-+++...... ..++++++|..-..+
T Consensus 429 ~Ls~~Q~~Av~~il~------------s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~----G~~V~~lAPTgrAA~ 488 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFT------------STKRFIIINGFGGTGSTEIAQLLLHLASEQ----GYEIQIITAGSLSAQ 488 (1960)
T ss_pred CCCHHHHHHHHHHHh------------CCCCeEEEEECCCCCHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHH
Confidence 678899999987753 334567788888999997766665544322 258899999875443
No 471
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=41.62 E-value=48 Score=36.76 Aligned_cols=40 Identities=28% Similarity=0.345 Sum_probs=25.9
Q ss_pred CCCEEEEeCCcccCCcchHHHHHHhhcccceEEEEeCCCCCCc
Q 000672 873 GPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNN 915 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~Sk~skal~~Lka~~RllLTGTPiqNn 915 (1360)
.++.+|+||++.+-.. ... .+..+.....+.|-|=|.|-.
T Consensus 62 ~~~~liiDE~~~~~~g--~l~-~l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPG--YLL-LLLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCChH--HHH-HHHhhccCcceEEEECchhcc
Confidence 4789999999987321 122 234444445677779998854
No 472
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=41.55 E-value=1.9e+02 Score=34.52 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=23.8
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHHh
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMRS 779 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~~ 779 (1360)
..++..|+.-+-|.|||..|.+++..++..
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 345566999999999999998888777543
No 473
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=41.44 E-value=81 Score=37.66 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=19.8
Q ss_pred CchHHHHHHHHHHHHHHhcccCCCceEEE-e-chh
Q 000672 762 GLGKTFQVIAFLYTAMRSVNLGLRTALIV-T-PVN 794 (1360)
Q Consensus 762 GLGKTlqaIAlI~~ll~~~~~~~k~~LIV-~-P~s 794 (1360)
|.|||-+++|+...+...+ +++|+| + |++
T Consensus 12 GVGKTT~aaA~A~~lA~~g----~kvLlvStDPAh 42 (322)
T COG0003 12 GVGKTTIAAATAVKLAESG----KKVLLVSTDPAH 42 (322)
T ss_pred cccHHHHHHHHHHHHHHcC----CcEEEEEeCCCC
Confidence 8899999998777665553 235655 3 554
No 474
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=41.40 E-value=2e+02 Score=36.64 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=44.6
Q ss_pred cchhhhchHHHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechh
Q 000672 718 SSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVN 794 (1360)
Q Consensus 718 ~~l~~~LrphQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~s 794 (1360)
++....|-|||...+.-++- .+........-.-+++.-.=|=|||-.+.+++.+...-.......++|++|.-
T Consensus 56 ~~~p~~l~PwQkFiia~l~G----~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~ 128 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFG----FYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSV 128 (546)
T ss_pred CCCccccchHHHHHHHHHhc----eeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccH
Confidence 45567899999998876542 11111111112336788888999997776666554433224445788888854
No 475
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=41.24 E-value=67 Score=36.99 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.1
Q ss_pred CCcceEEEeCCCchHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLY 774 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~ 774 (1360)
.+...+|-.+.|.|||..|-++..
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHH
Confidence 467889999999999988877654
No 476
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=40.91 E-value=15 Score=27.89 Aligned_cols=26 Identities=23% Similarity=0.613 Sum_probs=12.3
Q ss_pred cccccCCCC---ceeecCCcccccchhhh
Q 000672 536 YCVWCGRSS---DLVSCKSCKTLFCTTCV 561 (1360)
Q Consensus 536 ~C~~C~~gg---~l~~Cd~C~~~fc~~Cl 561 (1360)
.|.+|+..+ -...|..|...+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 588888555 58899999999999994
No 477
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=40.62 E-value=18 Score=31.61 Aligned_cols=29 Identities=28% Similarity=0.833 Sum_probs=24.4
Q ss_pred cccccCC----CCceeecCCcccccchhhhccc
Q 000672 536 YCVWCGR----SSDLVSCKSCKTLFCTTCVKRN 564 (1360)
Q Consensus 536 ~C~~C~~----gg~l~~Cd~C~~~fc~~Cl~~~ 564 (1360)
-|.+|++ +++.+.|..|...||..|-.+.
T Consensus 7 ~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 7 KCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred cChhhCCcccCCCCEEECCCCCCcccHHHHhhC
Confidence 5778874 8899999999999999996543
No 478
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.48 E-value=9.9 Score=46.26 Aligned_cols=41 Identities=29% Similarity=0.669 Sum_probs=25.2
Q ss_pred cccccCCCCceeecCCcccccchhhhcccCCcccccccccCCCceeecCCc
Q 000672 536 YCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 586 (1360)
Q Consensus 536 ~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p 586 (1360)
.|.+|.+.=.--.-..|...||..||...+.. .-.|+.|.-
T Consensus 28 ~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~----------~~~CP~Cr~ 68 (397)
T TIGR00599 28 RCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN----------QPKCPLCRA 68 (397)
T ss_pred CCCcCchhhhCccCCCCCCchhHHHHHHHHhC----------CCCCCCCCC
Confidence 56666543221122459999999999865432 137999943
No 479
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=40.44 E-value=2e+02 Score=37.85 Aligned_cols=36 Identities=11% Similarity=0.021 Sum_probs=23.9
Q ss_pred eEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEech
Q 000672 755 CILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV 793 (1360)
Q Consensus 755 gILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~ 793 (1360)
.++.-+=|-|||..+..++..+.... + ..++|.+|.
T Consensus 190 tV~taPRqrGKS~iVgi~l~~La~f~--G-i~IlvTAH~ 225 (752)
T PHA03333 190 TAATVPRRCGKTTIMAIILAAMISFL--E-IDIVVQAQR 225 (752)
T ss_pred eEEEeccCCCcHHHHHHHHHHHHHhc--C-CeEEEECCC
Confidence 34555679999987776655554321 2 478999993
No 480
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=40.18 E-value=5.1e+02 Score=32.01 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=36.4
Q ss_pred CCCEEEEeCCcc-cCCcchHHH--HHHhhc--ccceEEEEeCCCCCCchhhHHhhhhhhccC
Q 000672 873 GPDILVCDEAHM-IKNTRADTT--QALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREG 929 (1360)
Q Consensus 873 ~fdlVIlDEAH~-IKN~~Sk~s--kal~~L--ka~~RllLTGTPiqNnl~EL~sLL~fL~p~ 929 (1360)
..|+|.+|=+-+ .++. ..+. +++... ....-++||+|-=.+.+.+++..+.++...
T Consensus 281 ~~d~ILVDTaGrs~~D~-~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 281 DCDVILVDTAGRSQYDK-EKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPID 341 (407)
T ss_pred cCCEEEEeCCCCCccCH-HHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcc
Confidence 558888886533 3332 1111 122111 455679999999999999999999888765
No 481
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=39.90 E-value=67 Score=40.59 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=21.0
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYT 775 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ 775 (1360)
....|.+|.-+.|+|||..+=++...
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999887776543
No 482
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=39.72 E-value=7.2e+02 Score=31.58 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=30.4
Q ss_pred CCCEEEEeCCcccCCcchHHHHHHhhc-----ccceEEEEeCCCCCCchhhHHhhhhhhc
Q 000672 873 GPDILVCDEAHMIKNTRADTTQALKQV-----KCQRRIALTGSPLQNNLMEYYCMVDFVR 927 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~Sk~skal~~L-----ka~~RllLTGTPiqNnl~EL~sLL~fL~ 927 (1360)
+++++++|.+=+..+. ......+..+ .....++|++|.-++.+.++...++.+.
T Consensus 334 d~d~VLIDTaGr~~~d-~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~~~ 392 (484)
T PRK06995 334 NKHIVLIDTIGMSQRD-RMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRGPG 392 (484)
T ss_pred CCCeEEeCCCCcChhh-HHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhccCC
Confidence 5678888886544322 1222333322 2235688888887777766655544433
No 483
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=39.69 E-value=57 Score=38.12 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=17.3
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYT 775 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ 775 (1360)
.-..++|.-..||||| ++|.|.+
T Consensus 51 ~lDHvLl~GPPGlGKT--TLA~IIA 73 (332)
T COG2255 51 ALDHVLLFGPPGLGKT--TLAHIIA 73 (332)
T ss_pred CcCeEEeeCCCCCcHH--HHHHHHH
Confidence 3457899999999999 5555444
No 484
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.63 E-value=26 Score=42.24 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=33.1
Q ss_pred cceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec-hhhHHHHHHHHHHh
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP-VNVLHNWKQEFMKW 806 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P-~sLl~QW~~Ei~k~ 806 (1360)
.|.+++-+.|+|||+.|=|+... ++++.+=+. ..|...|+-|=+|.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE--------c~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE--------CGTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh--------hcCeEEEechhhhhhhhccchHHH
Confidence 58899999999999888776533 345555554 55777887776553
No 485
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=38.64 E-value=1.5e+02 Score=34.90 Aligned_cols=29 Identities=7% Similarity=-0.095 Sum_probs=23.9
Q ss_pred CCCcceEEEeCCCchHHHHHHHHHHHHHH
Q 000672 750 DKGLGCILAHTMGLGKTFQVIAFLYTAMR 778 (1360)
Q Consensus 750 ~~~~GgILADeMGLGKTlqaIAlI~~ll~ 778 (1360)
.-++..++..+-|.||+..|.+|...++.
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC 45 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILK 45 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhC
Confidence 44567778899999999999999988754
No 486
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=38.55 E-value=18 Score=41.50 Aligned_cols=56 Identities=30% Similarity=0.612 Sum_probs=31.4
Q ss_pred cccccCCCCceeecCC--cccccchhhhcccCCcccccccccCCCceeecCCch--hHHHH------HHHHHhhhc
Q 000672 536 YCVWCGRSSDLVSCKS--CKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS--LLKRL------TSELGRAMG 601 (1360)
Q Consensus 536 ~C~~C~~gg~l~~Cd~--C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~--~l~~L------~~~~~~~~~ 601 (1360)
-|..|+.--.- -|.+ |...||..||..-+ + +....|+.|.-+ .|.+| -.+.++++.
T Consensus 276 kCplc~~Llrn-p~kT~cC~~~fc~eci~~al----~-----dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 276 KCPLCHCLLRN-PMKTPCCGHTFCDECIGTAL----L-----DSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred cCcchhhhhhC-cccCccccchHHHHHHhhhh----h-----hccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 46666432211 2222 67899999975222 1 245899999764 23333 345555555
No 487
>PRK04132 replication factor C small subunit; Provisional
Probab=38.19 E-value=1.4e+02 Score=40.24 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=25.9
Q ss_pred CCCEEEEeCCcccCCcchHHHHHHhhc---ccceEEEEeCCCCCC
Q 000672 873 GPDILVCDEAHMIKNTRADTTQALKQV---KCQRRIALTGSPLQN 914 (1360)
Q Consensus 873 ~fdlVIlDEAH~IKN~~Sk~skal~~L---ka~~RllLTGTPiqN 914 (1360)
++.+||+||||++.. +.....++.+ ....+++|+.++...
T Consensus 630 ~~KVvIIDEaD~Lt~--~AQnALLk~lEep~~~~~FILi~N~~~k 672 (846)
T PRK04132 630 SFKIIFLDEADALTQ--DAQQALRRTMEMFSSNVRFILSCNYSSK 672 (846)
T ss_pred CCEEEEEECcccCCH--HHHHHHHHHhhCCCCCeEEEEEeCChhh
Confidence 467899999999942 2222223333 456788898887543
No 488
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.09 E-value=12 Score=42.64 Aligned_cols=45 Identities=24% Similarity=0.623 Sum_probs=34.1
Q ss_pred ccccccCCCCceeecCCcccccchhhhcccCCcccccccccCCCceeecCCch
Q 000672 535 CYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPS 587 (1360)
Q Consensus 535 ~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p~ 587 (1360)
..|.+|-+.-+...|-.|...||-.||... .+ ....=+|+.|..+
T Consensus 216 ~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~---~t-----~~k~~~CplCRak 260 (271)
T COG5574 216 YKCFLCLEEPEVPSCTPCGHLFCLSCLLIS---WT-----KKKYEFCPLCRAK 260 (271)
T ss_pred cceeeeecccCCcccccccchhhHHHHHHH---HH-----hhccccCchhhhh
Confidence 369999999999999999999999998642 11 1112359999644
No 489
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.04 E-value=96 Score=38.67 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHhhhccCCCch
Q 000672 107 EMTVYKEQWEAALDELETESAHLLEQLDGAGIELP 141 (1360)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (1360)
+|......=++.|.+||+|.+.|.+|++.+|..++
T Consensus 94 ~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 94 VLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 45577777789999999999999999988888766
No 490
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=37.87 E-value=17 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.723 Sum_probs=12.6
Q ss_pred CCCCcccccccCCCCceeecCCcc
Q 000672 530 ADCSECYCVWCGRSSDLVSCKSCK 553 (1360)
Q Consensus 530 ~d~~~~~C~~C~~gg~l~~Cd~C~ 553 (1360)
+++.. ||.-||..-....|-.|.
T Consensus 12 ~~~ak-FC~~CG~~l~~~~Cp~CG 34 (645)
T PRK14559 12 PNNNR-FCQKCGTSLTHKPCPQCG 34 (645)
T ss_pred CCCCc-cccccCCCCCCCcCCCCC
Confidence 34444 888886665433444443
No 491
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.83 E-value=10 Score=45.01 Aligned_cols=43 Identities=23% Similarity=0.487 Sum_probs=31.5
Q ss_pred cccccCCCC----ceeecCCcccccchhhhcccCCcccccccccCCCc--eeecCCch
Q 000672 536 YCVWCGRSS----DLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCW--QCCCCSPS 587 (1360)
Q Consensus 536 ~C~~C~~gg----~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W--~C~~C~p~ 587 (1360)
.|.+|-+|. +|-.=.+|..+||..|+...+ +-+|| .|+.|..+
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwf---------e~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWF---------EGDPSNRGCPICQIK 54 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHH---------ccCCccCCCCceeec
Confidence 688887665 344556699999999986443 45688 69999844
No 492
>PRK09165 replicative DNA helicase; Provisional
Probab=37.81 E-value=3.5e+02 Score=34.41 Aligned_cols=52 Identities=13% Similarity=0.042 Sum_probs=34.3
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcc-----------cCCCceEEEechhhHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVN-----------LGLRTALIVTPVNVLHNWKQEF 803 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~-----------~~~k~~LIV~P~sLl~QW~~Ei 803 (1360)
|.=.|||.-+|+|||.-++.++........ ....++|++..---..++...+
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~ 279 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRI 279 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHH
Confidence 344789999999999888887766543321 0135788887655555555444
No 493
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=37.56 E-value=2e+02 Score=36.34 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=35.1
Q ss_pred CCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHHH
Q 000672 751 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK 805 (1360)
Q Consensus 751 ~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~k 805 (1360)
++.-.++.-+.|.|||..++-|+......+ .++|+|.----..|-...+..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~g----e~~~y~s~eEs~~~i~~~~~~ 312 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANK----ERAILFAYEESRAQLLRNAYS 312 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEEeeCCHHHHHHHHHH
Confidence 355688999999999999988888775543 367777754444444444443
No 494
>PHA02542 41 41 helicase; Provisional
Probab=37.48 E-value=2.9e+02 Score=34.93 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=27.3
Q ss_pred cceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEec
Q 000672 753 LGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTP 792 (1360)
Q Consensus 753 ~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P 792 (1360)
.=.|+|..+|+|||..++.++...... .+++|++.-
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~----g~~Vl~fSL 226 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQ----GYNVLYISM 226 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhc----CCcEEEEec
Confidence 347899999999999888888666432 357888863
No 495
>PHA00012 I assembly protein
Probab=37.33 E-value=57 Score=38.91 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=18.5
Q ss_pred EEEeCCCchHHHHHHHHHHHHHHhc
Q 000672 756 ILAHTMGLGKTFQVIAFLYTAMRSV 780 (1360)
Q Consensus 756 ILADeMGLGKTlqaIAlI~~ll~~~ 780 (1360)
++---+|.|||+.+++-|...+..+
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC
Confidence 4455689999999998776665543
No 496
>PRK04023 DNA polymerase II large subunit; Validated
Probab=37.10 E-value=20 Score=47.63 Aligned_cols=44 Identities=20% Similarity=0.529 Sum_probs=0.0
Q ss_pred eeccCccccccccccccccccccCcchhhhhhcCcccCCCCCcccccccCCCCceeecCCccc
Q 000672 492 YCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKT 554 (1360)
Q Consensus 492 ~C~~Cg~~~~~~~~HP~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~ 554 (1360)
+|+.||....... |+.|-.. .....+|..|+.-+.-..|.+|..
T Consensus 628 fCpsCG~~t~~fr---------CP~CG~~----------Te~i~fCP~CG~~~~~y~CPKCG~ 671 (1121)
T PRK04023 628 KCPSCGKETFYRR---------CPFCGTH----------TEPVYRCPRCGIEVEEDECEKCGR 671 (1121)
T ss_pred cCCCCCCcCCccc---------CCCCCCC----------CCcceeCccccCcCCCCcCCCCCC
No 497
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.09 E-value=16 Score=46.60 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=29.3
Q ss_pred ccccCcchhhhhhcCcccCCCCCcccccccCCCCceeecCCcccccchhhhc
Q 000672 511 VIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVK 562 (1360)
Q Consensus 511 ~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~ 562 (1360)
+..|..|..|+-+... .|...+|+.|..+|+ -||+|.+.+|..|+.
T Consensus 126 ~~Yc~~~e~fl~dr~v----~g~cp~cg~~~arGD--~Ce~Cg~~~~P~~l~ 171 (558)
T COG0143 126 GLYCVSCERFLPDRYV----EGTCPKCGGEDARGD--QCENCGRTLDPTELI 171 (558)
T ss_pred eeEcccccccccchhe----eccCCCcCccccCcc--hhhhccCcCCchhcC
Confidence 5566666554422211 222335666667777 799999999999964
No 498
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=36.72 E-value=5.3e+02 Score=28.65 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=35.3
Q ss_pred cCCCCEEEEeCCcccCCc----chHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhh
Q 000672 871 QDGPDILVCDEAHMIKNT----RADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFV 926 (1360)
Q Consensus 871 ~~~fdlVIlDEAH~IKN~----~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL 926 (1360)
...|++||+||--..-+. -...-.++..-....-+++||.-.+..+.|+..++.=+
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVTEm 179 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLVTEM 179 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHhhc
Confidence 348999999997544322 22333444444566679999976666666666665443
No 499
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=36.54 E-value=8.7 Score=49.75 Aligned_cols=56 Identities=25% Similarity=0.655 Sum_probs=39.4
Q ss_pred cCCCCCcccccccCCC----CceeecCCcccccchhhhcccCCcccccccccCCCceeecCCc
Q 000672 528 KDADCSECYCVWCGRS----SDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSP 586 (1360)
Q Consensus 528 ~d~d~~~~~C~~C~~g----g~l~~Cd~C~~~fc~~Cl~~~~~~~~~~~~~~~~~W~C~~C~p 586 (1360)
+.-.+.--.|.||.+- -....|.+|-++||..||...-.. .+....+.|.|+-|+.
T Consensus 185 ~~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs---~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 185 EQLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARS---SEKTGQDGWRCPACQS 244 (950)
T ss_pred HHHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHH---hhhccCccccCCcccc
Confidence 3333344368888654 356799999999999999866433 2234557899999973
No 500
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=36.27 E-value=1.9e+02 Score=36.68 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=32.9
Q ss_pred CcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHHH
Q 000672 752 GLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMK 805 (1360)
Q Consensus 752 ~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~k 805 (1360)
+.-.++.-+.|.|||.-+..++......+ .++++|.-.....+-.+.+..
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g----~~~~yis~e~~~~~i~~~~~~ 322 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRG----ERCLLFAFEESRAQLIRNARS 322 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCC----CcEEEEEecCCHHHHHHHHHH
Confidence 34457789999999999999887765443 377777654334443333333
Done!