Query 000672
Match_columns 1360
No_of_seqs 531 out of 2769
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 16:26:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000672.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_445-449//hhsearch_pdb/000672hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 1.0 1 1 710.6 44.3 530 711-1313 43-583 (644)
2 3mwy_W Chromo domain-containin 1.0 1 1 677.4 40.9 492 718-1307 231-739 (800)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 615.2 36.5 470 711-1303 26-498 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 461.4 27.4 448 720-1282 150-638 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 374.3 29.4 448 721-1277 7-493 (494)
6 1z5z_A Helicase of the SNF2/RA 1.0 1 1 355.5 23.0 258 975-1304 12-270 (271)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 346.2 22.1 377 721-1276 91-471 (472)
8 4a2q_A RIG-I, retinoic acid in 1.0 1 1 336.9 30.8 501 715-1283 238-772 (797)
9 4a2w_A RIG-I, retinoic acid in 1.0 1 1 335.0 30.8 490 716-1282 239-771 (936)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 323.5 30.9 489 721-1282 5-530 (556)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=710.58 Aligned_cols=530 Identities=32% Similarity=0.547 Sum_probs=432.8
Q ss_pred CCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC---CCCCE
Q ss_conf 755236940022120999999999999999856430378998446999098822899999999999883025---89726
Q 000672 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL---GLRTA 787 (1360)
Q Consensus 711 ~~~v~vP~~l~~~LkphQ~eGV~~Lle~~~~sl~r~~~~~~g~GgILADeMGLGKTlQaIAlI~~ll~~~~~---~~k~v 787 (1360)
...+.+|+.+...|+|||++||.|||+.+.+. ....+.||||||+||||||+|+|+++..++..... ..+++
T Consensus 43 ~~~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~-----~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~ 117 (644)
T 1z3i_X 43 PVHVVVDPVLSKVLRPHQREGVKFLWDCVTGR-----RIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKV 117 (644)
T ss_dssp CCCEECCHHHHTTCCHHHHHHHHHHHHHHTTS-----SSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCE
T ss_pred CCEEEECHHHHHCCCHHHHHHHHHHHHHHHCC-----CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 86175185640035199999999999842335-----4458887596107874299999999999997486656777857
Q ss_pred EEEECHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHH------CCCEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 9990624699999999985899999809999358536699999999851------6989998013100123463211134
Q 000672 788 LIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRA------KGGVFLIGYTAFRNLSFGKHVKDRN 861 (1360)
Q Consensus 788 LIVvP~sLl~QW~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~------~~~ViIisY~~lr~l~~~~~~~~~~ 861 (1360)
|||||.+++.||.+||.+|+|.. +.++.+++.....+...+..|.. ..+|+|+||++++...
T Consensus 118 LiV~P~sll~qW~~E~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--------- 185 (644)
T 1z3i_X 118 IVVSPSSLVRNWYNEVGKWLGGR---VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--------- 185 (644)
T ss_dssp EEEECHHHHHHHHHHHHHHHGGG---CCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT---------
T ss_pred EEEECHHHHHHHHHHHHHHCCCC---EEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH---------
T ss_conf 99965899887999999975887---259998089889999999999873377778757996389987657---------
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHC
Q ss_conf 68998754127988999908832388401899998613365099982788987335678653210269999958898520
Q 000672 862 MAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRF 941 (1360)
Q Consensus 862 ~~~~~~~lL~~~~dlVIiDEAH~iKN~~Sk~skal~~L~a~~RilLTGTPIqNnl~EL~sLL~FL~p~~lg~~~eF~~~f 941 (1360)
..+....|++||+||||++||..+++++++..+++.+||+|||||+||++.|+|++++|+.|++|++...|.++|
T Consensus 186 -----~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f 260 (644)
T 1z3i_X 186 -----EVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRF 260 (644)
T ss_dssp -----TTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHT
T ss_pred -----HHHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf -----875048865799878622478045999999855567379984673458899999999861887689999999863
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 58744678899873789999887999999975876543355553119996289997339999999999999750554543
Q 000672 942 QNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDR 1021 (1360)
Q Consensus 942 ~~Pi~~g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vi~v~Lt~~Q~~LY~~ll~~~~~~~~~ 1021 (1360)
..|+..+...+.+......+..+...|+..+.+|++||++.++...||++.+++++|+|++.|+.+|+.++.........
T Consensus 261 ~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~ 340 (644)
T 1z3i_X 261 EIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL 340 (644)
T ss_dssp HHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS
T ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 26154167767788899999999999999988999871087676427983699998379989999999999989999987
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHH
Q ss_conf 22378874299999999999448100000001699997555578874334421112688755012101799985201233
Q 000672 1022 VSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDW 1101 (1360)
Q Consensus 1022 ~~~~~~~~s~l~~l~~Lrqic~hP~Ll~~~~~~~~~~~ed~~d~~~d~~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~ 1101 (1360)
.......+.+..+..|+++|+||.++............... +.......
T Consensus 341 -~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~----------------------~~~~~~~~-------- 389 (644)
T 1z3i_X 341 -QTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGAL----------------------DLFPQNYS-------- 389 (644)
T ss_dssp -CTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGG----------------------GTSCSSCC--------
T ss_pred -HCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHH----------------------HHCCCCCC--------
T ss_conf -62762145999999999995799988888741540035577----------------------64542111--------
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 4443210011123557059999999996211-999299991764269999999830999998753323797189824898
Q 000672 1102 WNDLLHEHTYKELDYSGKMVLLLDILTMCSN-MGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRT 1180 (1360)
Q Consensus 1102 ~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~-~g~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~g~~~~~Gi~~~rLdGst 1180 (1360)
........|+|+..|..++..... .++|+||||+|+.++++|+.+|.. .|+.+.+++|++
T Consensus 390 -------~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~------------~g~~~~~l~G~~ 450 (644)
T 1z3i_X 390 -------TKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN------------RRYLYVRLDGTM 450 (644)
T ss_dssp -------SSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH------------HTCCEEEECSSC
T ss_pred -------CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH------------CCCCEEEEECCC
T ss_conf -------0005701174899999999998646998799998059999999999997------------799789983999
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 99999999999808899982189941432224678667897999929999427999959574309988689999961899
Q 000672 1181 ESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGT 1260 (1360)
Q Consensus 1181 s~~eRe~iI~~Fn~~~n~~vkVlLISTkAGgeGLNLt~An~VIilD~~WNPs~e~QAIGRv~RiGQkK~V~VyrLia~gT 1260 (1360)
+..+|+.++++|+++... ..+||+||++||+||||++|++||+||+||||+.+.||+||+||+||+++|+||+|++.||
T Consensus 451 ~~~~R~~~i~~F~~~~~~-~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 451 SIKKRAKIVERFNNPSSP-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp CHHHHHHHHHHHHSTTCC-CCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred CHHHHHHHHHHHCCCCCC-CEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 999999999996399999-6799984455667846523898999799998137999988403228987269999887988
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 999999999999999998814221-02358999998701589998998133422
Q 000672 1261 MEEKIYKRQVTKEGLAARVVDRQQ-VHRTISKEEMLHLFEFGDDENPDPLTAVS 1313 (1360)
Q Consensus 1261 IEEkI~~rq~~K~~La~~Vvd~~~-~~r~ls~~EL~eLF~~~~d~~~d~l~~l~ 1313 (1360)
+||+|+++|..|+.+++.++++++ ..+.|+.+||.+||++.++...++...+.
T Consensus 530 iEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~~~~~~~~t~~~~~ 583 (644)
T 1z3i_X 530 IEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFR 583 (644)
T ss_dssp HHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCSSCSCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 999999999999999999856860543378999999986789876322566650
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=677.41 Aligned_cols=492 Identities=30% Similarity=0.405 Sum_probs=397.3
Q ss_pred CCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHH
Q ss_conf 40022120999999999999999856430378998446999098822899999999999883025897269990624699
Q 000672 718 SSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLH 797 (1360)
Q Consensus 718 ~~l~~~LkphQ~eGV~~Lle~~~~sl~r~~~~~~g~GgILADeMGLGKTlQaIAlI~~ll~~~~~~~k~vLIVvP~sLl~ 797 (1360)
.....+|+|||++||.||+... ..+.||||||+||||||+|+|+++..++.... ..+++|||||.+++.
T Consensus 231 ~~~~~~Lr~yQ~egv~~l~~~~----------~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-~~~~~LIV~P~sll~ 299 (800)
T 3mwy_W 231 FIKGGELRDFQLTGINWMAFLW----------SKGDNGILADEMGLGKTVQTVAFISWLIFARR-QNGPHIIVVPLSTMP 299 (800)
T ss_dssp TCCSSCCCTHHHHHHHHHHHHH----------TTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-CCSCEEEECCTTTHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH----------HCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC-CCCCEEEEECCHHHH
T ss_conf 6579975899999999999985----------13899899827875329999999999998607-799889998803899
Q ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH----------HHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 999999985899999809999358536699999999----------8516989998013100123463211134689987
Q 000672 798 NWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAK----------WRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREIC 867 (1360)
Q Consensus 798 QW~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~----------~~~~~~ViIisY~~lr~l~~~~~~~~~~~~~~~~ 867 (1360)
||.+||.+|+|. +.+..+++............ ....++|+|+||+++... ..
T Consensus 300 qW~~E~~~~~p~----~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~--------------~~ 361 (800)
T 3mwy_W 300 AWLDTFEKWAPD----LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD--------------RA 361 (800)
T ss_dssp HHHHHHHHHSTT----CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT--------------HH
T ss_pred HHHHHHHHHCCC----CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHH--------------HH
T ss_conf 999999997799----649998277777889888776226300134456678899069999864--------------99
Q ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 54127988999908832388401899998613365099982788987335678653210269999958898520587446
Q 000672 868 HALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIEN 947 (1360)
Q Consensus 868 ~lL~~~~dlVIiDEAH~iKN~~Sk~skal~~L~a~~RilLTGTPIqNnl~EL~sLL~FL~p~~lg~~~eF~~~f~~Pi~~ 947 (1360)
.+....|++||+||||++||..++.++++..+++.+||+|||||++|++.|+|++++||.|+.|+....|......
T Consensus 362 ~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~---- 437 (800)
T 3mwy_W 362 ELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD---- 437 (800)
T ss_dssp HHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT----
T ss_pred HHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCC----
T ss_conf 9833773256413444414710199999997522438972278577999999999998586636743442322231----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 78899873789999887999999975876543355553119996289997339999999999999750554543223788
Q 000672 948 GQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKI 1027 (1360)
Q Consensus 948 g~~~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vi~v~Lt~~Q~~LY~~ll~~~~~~~~~~~~~~~ 1027 (1360)
. ........|+..+.||++||++.++...||++.+.+++|+|++.|+.+|+.++......... ...+.
T Consensus 438 -------~----~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~-~~~~~ 505 (800)
T 3mwy_W 438 -------E----EQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTA-GAKGG 505 (800)
T ss_dssp -------T----HHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------
T ss_pred -------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH-CCCCC
T ss_conf -------4----68999999999975777532087664316882799997079999999999999999999861-03545
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 74299999999999448100000001699997555578874334421112688755012101799985201233444321
Q 000672 1028 RKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLH 1107 (1360)
Q Consensus 1028 ~~s~l~~l~~Lrqic~hP~Ll~~~~~~~~~~~ed~~d~~~d~~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~ 1107 (1360)
..+++..++.|+++|+||+++............. .........
T Consensus 506 ~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~--------------------------------~~~~~~~~~----- 548 (800)
T 3mwy_W 506 HFSLLNIMNELKKASNHPYLFDNAEERVLQKFGD--------------------------------GKMTRENVL----- 548 (800)
T ss_dssp -CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC------------------------------------CCSHHHH-----
T ss_pred HHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCC--------------------------------CCCCHHHHH-----
T ss_conf 4469999999998735865423557899886156--------------------------------655577888-----
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf 00111235570599999999962119992999917642699999998309999987533237971898248989999999
Q 000672 1108 EHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQK 1187 (1360)
Q Consensus 1108 ~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~g~~~~~Gi~~~rLdGsts~~eRe~ 1187 (1360)
...+..|+|+.+|.++|..+...|+|+||||||+.++++|+.+|.. .|+.+.+++|+++..+|+.
T Consensus 549 ---~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~------------~g~~~~~i~G~~~~~eR~~ 613 (800)
T 3mwy_W 549 ---RGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSI------------KGINFQRLDGTVPSAQRRI 613 (800)
T ss_dssp ---HHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHH------------HTCCCEEESTTSCHHHHHH
T ss_pred ---HHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHH------------CCCCEEEEECCCCHHHHHH
T ss_conf ---8766427699999999999752798189996359999999999986------------7997899969999999999
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 99998088999821899414322246786678979999299994279999595743099886899999618999999999
Q 000672 1188 LVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYK 1267 (1360)
Q Consensus 1188 iI~~Fn~~~n~~vkVlLISTkAGgeGLNLt~An~VIilD~~WNPs~e~QAIGRv~RiGQkK~V~VyrLia~gTIEEkI~~ 1267 (1360)
++++|+++.. ...+||+||++||+||||++|++||+||++|||+.+.||+||+||+||+++|+||+|+++||+|++|++
T Consensus 614 ~i~~F~~~~~-~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~ 692 (800)
T 3mwy_W 614 SIDHFNSPDS-NDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLE 692 (800)
T ss_dssp HHHTTSSTTC-SCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHH
T ss_pred HHHHHHCCCC-CCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHH
T ss_conf 9999608999-825999745445678776016368994687881168999999885589863799998619989999999
Q ss_pred HHHHHHHHHHHHHCCCCC-------CCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 999999999988142210-------2358999998701589998998
Q 000672 1268 RQVTKEGLAARVVDRQQV-------HRTISKEEMLHLFEFGDDENPD 1307 (1360)
Q Consensus 1268 rq~~K~~La~~Vvd~~~~-------~r~ls~~EL~eLF~~~~d~~~d 1307 (1360)
++..|+.++..+++.+.. ...++.++|.+|+.++.....+
T Consensus 693 ~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~~~~ 739 (800)
T 3mwy_W 693 RARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFT 739 (800)
T ss_dssp HHHHHTTSCC----------------CCCCHHHHHHHHSSCSSSSCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHH
T ss_conf 99998889999970375665321123478999999999716576511
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=615.18 Aligned_cols=470 Identities=30% Similarity=0.458 Sum_probs=399.2
Q ss_pred CCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 75523694002212099999999999999985643037899844699909882289999999999988302589726999
Q 000672 711 EEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIV 790 (1360)
Q Consensus 711 ~~~v~vP~~l~~~LkphQ~eGV~~Lle~~~~sl~r~~~~~~g~GgILADeMGLGKTlQaIAlI~~ll~~~~~~~k~vLIV 790 (1360)
.+++. |..+...|+|||.+|+.||+... ..+.|+||||+||+|||+++++++..+..... .+++|||
T Consensus 26 ~~~~~-p~~~~~~L~~~Q~~~v~~l~~~~----------~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~--~~~~LIv 92 (500)
T 1z63_A 26 FQLLE-PYNIKANLRPYQIKGFSWMRFMN----------KLGFGICLADDMGLGKTLQTIAVFSDAKKENE--LTPSLVI 92 (500)
T ss_dssp CCCCC-CCSCSSCCCHHHHHHHHHHHHHH----------HTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC--CSSEEEE
T ss_pred CCCCC-CHHHHCCCHHHHHHHHHHHHHHH----------HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--CCCEEEE
T ss_conf 76679-83320033699999999999974----------17998899808997389999999998875589--9978999
Q ss_pred ECHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 06246999999999858999998099993585366999999998516989998013100123463211134689987541
Q 000672 791 TPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL 870 (1360)
Q Consensus 791 vP~sLl~QW~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~l~~~~~~~~~~~~~~~~~lL 870 (1360)
||.+++.||.+||.+|+|. +++..+++.... .....++|+|+||+++.... .+.
T Consensus 93 ~P~~l~~qw~~e~~~~~~~----~~v~~~~g~~~~-------~~~~~~~ivi~t~~~l~~~~---------------~l~ 146 (500)
T 1z63_A 93 CPLSVLKNWEEELSKFAPH----LRFAVFHEDRSK-------IKLEDYDIILTTYAVLLRDT---------------RLK 146 (500)
T ss_dssp ECSTTHHHHHHHHHHHCTT----SCEEECSSSTTS-------CCGGGSSEEEEEHHHHTTCH---------------HHH
T ss_pred CCHHHHHHHHHHHHHHCCC----CEEEEEECCCHH-------CCCCCCCEEEEEHHHHHCCC---------------HHC
T ss_conf 0389999999999997799----559997267021-------00357768996379972630---------------211
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 27988999908832388401899998613365099982788987335678653210269999958898520587446788
Q 000672 871 QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQH 950 (1360)
Q Consensus 871 ~~~~dlVIiDEAH~iKN~~Sk~skal~~L~a~~RilLTGTPIqNnl~EL~sLL~FL~p~~lg~~~eF~~~f~~Pi~~g~~ 950 (1360)
...|++||+||||+++|..+++++++..+.+++||+|||||++|++.|+|++++|+.|+++++...|...|..|+..+..
T Consensus 147 ~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~ 226 (500)
T 1z63_A 147 EVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDN 226 (500)
T ss_dssp TCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCH
T ss_conf 78728799808410178768999999960047189974677779999999999985877579989999985251114668
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 998737899998879999999758765433555--531199962899973399999999999997505545432237887
Q 000672 951 TNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNV--VKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIR 1028 (1360)
Q Consensus 951 ~~st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~--v~~~LP~k~e~vi~v~Lt~~Q~~LY~~ll~~~~~~~~~~~~~~~~ 1028 (1360)
.....|...+.+++.||++.+ +...||++.+..+++++++.|+.+|+.+.................
T Consensus 227 ------------~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 294 (500)
T 1z63_A 227 ------------MAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRK 294 (500)
T ss_dssp ------------HHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHH
T ss_pred ------------HHHHHHHHHHHHHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf ------------89999999976674550255424112299975899981899999999999999999999864232106
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 42999999999994481000000016999975555788743344211126887550121017999852012334443210
Q 000672 1029 KSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHE 1108 (1360)
Q Consensus 1029 ~s~l~~l~~Lrqic~hP~Ll~~~~~~~~~~~ed~~d~~~d~~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~ 1108 (1360)
..++..+..|+++|+||.++....
T Consensus 295 ~~~~~~l~~lr~~~~~p~l~~~~~-------------------------------------------------------- 318 (500)
T 1z63_A 295 GMILSTLLKLKQIVDHPALLKGGE-------------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHCSC--------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCHHHHCCCC--------------------------------------------------------
T ss_conf 799999999998817998843852--------------------------------------------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 01112355705999999999621199929999176426999999983099999875332379718982489899999999
Q 000672 1109 HTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKL 1188 (1360)
Q Consensus 1109 ~~~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~g~~~~~Gi~~~rLdGsts~~eRe~i 1188 (1360)
.....|+|+..+.+++......++|+||||++..+++.|..+|.. ..|+.+.+++|+++..+|+++
T Consensus 319 ---~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~-----------~~~~~~~~~~g~~~~~~R~~~ 384 (500)
T 1z63_A 319 ---QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEK-----------ELNTEVPFLYGELSKKERDDI 384 (500)
T ss_dssp ---CCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHH-----------HHTCCCCEEETTSCHHHHHHH
T ss_pred ---CHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHH-----------HHCCCEEEEECCCCHHHHHHH
T ss_conf ---011115529999999999872688689997218899999999988-----------538876999799999999999
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHH
Q ss_conf 99980889998218994143222467866789799992999942799995957430998868999996189999999999
Q 000672 1189 VERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKR 1268 (1360)
Q Consensus 1189 I~~Fn~~~n~~vkVlLISTkAGgeGLNLt~An~VIilD~~WNPs~e~QAIGRv~RiGQkK~V~VyrLia~gTIEEkI~~r 1268 (1360)
+++|++++ .++++|+||+++++|+||+.|++||+||+||||..+.||+||++|+||+++|+||+|++.+|+|++|+++
T Consensus 385 ~~~F~~~~--~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~ 462 (500)
T 1z63_A 385 ISKFQNNP--SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQL 462 (500)
T ss_dssp HHHHHHCT--TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHH
T ss_pred HHHHCCCC--CCCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHH
T ss_conf 99960899--9877999533355777445588899958998954589999988873898706999977489899999999
Q ss_pred HHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHCCCCC
Q ss_conf 9999999998814221-0235899999870158999
Q 000672 1269 QVTKEGLAARVVDRQQ-VHRTISKEEMLHLFEFGDD 1303 (1360)
Q Consensus 1269 q~~K~~La~~Vvd~~~-~~r~ls~~EL~eLF~~~~d 1303 (1360)
+..|..++..+++.+. ....++.+||.+||++.+.
T Consensus 463 ~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (500)
T 1z63_A 463 LAFKRSLFKDIISSGDSWITELSTEELRKVIELSVG 498 (500)
T ss_dssp HTTCSSSSSSGGGSTTGGGGSSCHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHCCCCC
T ss_conf 999999999986068502115999999999646889
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=461.43 Aligned_cols=448 Identities=18% Similarity=0.172 Sum_probs=319.7
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHH
Q ss_conf 02212099999999999999985643037899844699909882289999999999988302589726999062469999
Q 000672 720 ISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNW 799 (1360)
Q Consensus 720 l~~~LkphQ~eGV~~Lle~~~~sl~r~~~~~~g~GgILADeMGLGKTlQaIAlI~~ll~~~~~~~k~vLIVvP~sLl~QW 799 (1360)
....|+|||.+++.|++. ..+.|+||||+||+|||+++++++..++..+. .+++|||||.+|+.||
T Consensus 150 ~~~~LrpyQ~eav~~~l~------------~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~--~~rvLIVvP~sLl~Qw 215 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGR------------RHAPRVLLADEVGLGKTIEAGMILHQQLLSGA--AERVLIIVPETLQHQW 215 (968)
T ss_dssp CSSCCCHHHHHHHHHHHH------------SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS--CCCEEEECCTTTHHHH
T ss_pred CCCCCCHHHHHHHHHHHH------------HCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHH
T ss_conf 899970999999999997------------05898898789997599999999999998189--9829999578889999
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999858999998099993585366999999998516989998013100123463211134689987541279889999
Q 000672 800 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 879 (1360)
Q Consensus 800 ~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~l~~~~~~~~~~~~~~~~~lL~~~~dlVIi 879 (1360)
..||.+|++ +.+.++++.................+|+|+||+++..... ....+....|++||+
T Consensus 216 ~~E~~~~f~-----l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~-----------~~~~l~~~~~dlVIv 279 (968)
T 3dmq_A 216 LVEMLRRFN-----LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQ-----------RLEHLCEAEWDLLVV 279 (968)
T ss_dssp HHHHHHHSC-----CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTT-----------TTHHHHTSCCCEEEE
T ss_pred HHHHHHHHC-----CCEEEECCCHHHHHHHHCCCCCCCCCEEEECHHHHHHCHH-----------HHHHHHHCCCCEEEE
T ss_conf 999999869-----9879980620555432003644568989976899864878-----------888764158778974
Q ss_pred ECCCCCCCCCHH---HHHHHHHC--CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC---------
Q ss_conf 088323884018---99998613--3650999827889873356786532102699999588985205874---------
Q 000672 880 DEAHMIKNTRAD---TTQALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPI--------- 945 (1360)
Q Consensus 880 DEAH~iKN~~Sk---~skal~~L--~a~~RilLTGTPIqNnl~EL~sLL~FL~p~~lg~~~eF~~~f~~Pi--------- 945 (1360)
||||+++|..+. .++++..+ +++++|+|||||++|++.|+|++++|+.|+.|++...|...+....
T Consensus 280 DEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l 359 (968)
T 3dmq_A 280 DEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAML 359 (968)
T ss_dssp CCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44676258887542999999998625785899976876698799999998259301189899999998578899999987
Q ss_pred CCCCC---------CCCC--------H-----HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 46788---------9987--------3-----78999988799999997-----58765433555531199962899973
Q 000672 946 ENGQH---------TNST--------S-----EDVKIMNQRSHILYEQL-----KGFVQRMDMNVVKKDLPPKTVFVITV 998 (1360)
Q Consensus 946 ~~g~~---------~~st--------~-----~~~~~~~~r~~~L~~~L-----~~fv~Rrtk~~v~~~LP~k~e~vi~v 998 (1360)
..+.. .... . ........+...+...+ ...+.|+++..+ ..+|++....+.+
T Consensus 360 ~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l 438 (968)
T 3dmq_A 360 LAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKL 438 (968)
T ss_dssp TTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEE
T ss_pred HCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCHHHEEEEEC
T ss_conf 426789988999999884203367887503622233379999999999986173326563226554-5567111575236
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 39999999999999750554543223788742999999999994481000000016999975555788743344211126
Q 000672 999 KLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIG 1078 (1360)
Q Consensus 999 ~Lt~~Q~~LY~~ll~~~~~~~~~~~~~~~~~s~l~~l~~Lrqic~hP~Ll~~~~~~~~~~~ed~~d~~~d~~~~~~~~~~ 1078 (1360)
.+++..+.+|............ .. . ...+.+|..+...
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~---~~----~--------~~~~l~pe~~~~~--------------------------- 476 (968)
T 3dmq_A 439 PLPTQYQTAIKVSGIMGARKSA---ED----R--------ARDMLYPERIYQE--------------------------- 476 (968)
T ss_dssp CCCHHHHHHHHHHHHTTCCSSG---GG----G--------THHHHCSGGGTTT---------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHH---HH----H--------HHHHCCHHHHHHH---------------------------
T ss_conf 8999999999987543021266---77----7--------7641085989987---------------------------
Q ss_pred CCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCC
Q ss_conf 88755012101799985201233444321001112355705999999999621199929999176426999999983099
Q 000672 1079 EKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLP 1158 (1360)
Q Consensus 1079 e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFSQ~~~tLdlLe~~L~~l~ 1158 (1360)
+..........++|+..|.+++.. ..+.|+||||++..+++.|...|...
T Consensus 477 ---------------------------l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~- 526 (968)
T 3dmq_A 477 ---------------------------FEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLRER- 526 (968)
T ss_dssp ---------------------------TTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTT-
T ss_pred ---------------------------HHHHHHCCCCCCHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHHHH-
T ss_conf ---------------------------643331356856799999999983--79997899969599999999999987-
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 99987533237971898248989999999999980889998218994143222467866789799992999942799995
Q 000672 1159 RPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAI 1238 (1360)
Q Consensus 1159 ~~~~~g~~~~~Gi~~~rLdGsts~~eRe~iI~~Fn~~~n~~vkVlLISTkAGgeGLNLt~An~VIilD~~WNPs~e~QAI 1238 (1360)
.|+.+..++|+++..+|+.+++.|+++.+ .++ +|++|+++++|+|++.|++||+||+||||..+.|++
T Consensus 527 ----------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~-~~~-vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~ 594 (968)
T 3dmq_A 527 ----------EGIRAAVFHEGMSIIERDRAAAWFAEEDT-GAQ-VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRI 594 (968)
T ss_dssp ----------TCCCEEEECTTSCTTHHHHHHHHHHSTTS-SCE-EEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHH
T ss_pred ----------CCCCEEEEECCCCHHHHHHHHHHHHCCCC-CCC-EEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHH
T ss_conf ----------49838998499999999999999747997-630-898533431688855676799956999878999870
Q ss_pred HHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 95743099886899999618999999999999999999988142
Q 000672 1239 YRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282 (1360)
Q Consensus 1239 GRv~RiGQkK~V~VyrLia~gTIEEkI~~rq~~K~~La~~Vvd~ 1282 (1360)
||++|+||++.|+||+++..+|+|++|++.+..|..+....+..
T Consensus 595 GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~ 638 (968)
T 3dmq_A 595 GRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPT 638 (968)
T ss_dssp HTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSS
T ss_pred HCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEECCCCC
T ss_conf 11430799850899980577719999999998678763537997
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=374.31 Aligned_cols=448 Identities=16% Similarity=0.122 Sum_probs=281.9
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECH-HHHHHH
Q ss_conf 2212099999999999999985643037899844699909882289999999999988302589726999062-469999
Q 000672 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNW 799 (1360)
Q Consensus 721 ~~~LkphQ~eGV~~Lle~~~~sl~r~~~~~~g~GgILADeMGLGKTlQaIAlI~~ll~~~~~~~k~vLIVvP~-sLl~QW 799 (1360)
...|+|||.+++.|++. + ++||+++||+|||+++++++...+.. ..+++|||||. +|+.||
T Consensus 7 ~~~l~~~Q~~~i~~~~~--------------~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~ 68 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKE--------------T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQH 68 (494)
T ss_dssp HHCCCHHHHHHHHHGGG--------------S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH--------------C-CEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEEECCHHHHHHH
T ss_conf 87863999999999961--------------9-98999189987899999999999864---798599997888999999
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999858999998099993585366999999998516989998013100123463211134689987541279889999
Q 000672 800 KQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVC 879 (1360)
Q Consensus 800 ~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~l~~~~~~~~~~~~~~~~~lL~~~~dlVIi 879 (1360)
.+++.+|+.. ....+..+++........ .. ....+|+|+||+.+....... .+....|++||+
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~g~~~~~~~~--~~-~~~~~ivv~T~~~l~~~~~~~------------~~~~~~~~~vIi 131 (494)
T 1wp9_A 69 AESFRRLFNL--PPEKIVALTGEKSPEERS--KA-WARAKVIVATPQTIENDLLAG------------RISLEDVSLIVF 131 (494)
T ss_dssp HHHHHHHBCS--CGGGEEEECSCSCHHHHH--HH-HHHCSEEEECHHHHHHHHHTT------------SCCTTSCSEEEE
T ss_pred HHHHHHHHCC--CHHHEEEEECCCCHHHHH--HH-CCCCCEEEECHHHHHHHHHCC------------CCCHHHCEEEEE
T ss_conf 9999987475--611168760775335566--53-357989996399999998608------------715654108999
Q ss_pred ECCCCCCCCCHHHH--HHH-HHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCC---CCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 08832388401899--998-613365099982788987335678653210269---999958898520587446788998
Q 000672 880 DEAHMIKNTRADTT--QAL-KQVKCQRRIALTGSPLQNNLMEYYCMVDFVREG---FLGSSHEFRNRFQNPIENGQHTNS 953 (1360)
Q Consensus 880 DEAH~iKN~~Sk~s--kal-~~L~a~~RilLTGTPIqNnl~EL~sLL~FL~p~---~lg~~~eF~~~f~~Pi~~g~~~~s 953 (1360)
||||++++..+... ..+ ......++|+|||||. |+..+++.++.++.+. .......+...|..+.........
T Consensus 132 DEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (494)
T 1wp9_A 132 DEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVD 210 (494)
T ss_dssp ETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEEC
T ss_pred ECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECC
T ss_conf 787566888819999999973288776999956998-8857899999850700050267875878875278742689568
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHH----HHHHHHHHHHCCCCCCCCHHHHH-
Q ss_conf 7378999988799999997587654335555311999628999733999999----99999997505545432237887-
Q 000672 954 TSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQR----RLYKRFLDLHGFTNDRVSNEKIR- 1028 (1360)
Q Consensus 954 t~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vi~v~Lt~~Q~----~LY~~ll~~~~~~~~~~~~~~~~- 1028 (1360)
... ....+...+.+++.++........+..... ..++.... ..+...+.... ..........
T Consensus 211 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 277 (494)
T 1wp9_A 211 LPE-------IYKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGN--HDLRGLLLYHA 277 (494)
T ss_dssp CCH-------HHHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTTC--CSTTTHHHHHH
T ss_pred CCH-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHH
T ss_conf 858-------899999989899999999999735565457----77335578999999998753356--31134799998
Q ss_pred -----------------HHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf -----------------429999999999944810000000169999755557887433442111268875501210179
Q 000672 1029 -----------------KSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGK 1091 (1360)
Q Consensus 1029 -----------------~s~l~~l~~Lrqic~hP~Ll~~~~~~~~~~~ed~~d~~~d~~~~~~~~~~e~~~~~~d~~~~~ 1091 (1360)
..+...+..+...+.++.... .....
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~--- 320 (494)
T 1wp9_A 278 MALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKA----------------------------------SKEIF--- 320 (494)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHH----------------------------------HHHHH---
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHH----------------------------------HHHHH---
T ss_conf 88889999999985257999999999987522321145----------------------------------56666---
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9985201233444321001112355705999999999621--19992999917642699999998309999987533237
Q 000672 1092 NDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKK 1169 (1360)
Q Consensus 1092 ~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~--~~g~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~g~~~~~ 1169 (1360)
..... ......... .......++|+..|.++|.... ..+.|+|||+++..+++.+..+|.. .
T Consensus 321 -~~~~~-~~~~~~~~~--~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~------------~ 384 (494)
T 1wp9_A 321 -SDKRM-KKAISLLVQ--AKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK------------D 384 (494)
T ss_dssp -TSHHH-HHHHHHHHH--HHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH------------T
T ss_pred -HHHHH-HHHHHHHHH--HHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHH------------C
T ss_conf -50788-989999998--8745899869999999999984368997599997668999999999997------------5
Q ss_pred CCCEEEECC--------CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 971898248--------989999999999980889998218994143222467866789799992999942799995957
Q 000672 1170 GKDWYRLDG--------RTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRA 1241 (1360)
Q Consensus 1170 Gi~~~rLdG--------sts~~eRe~iI~~Fn~~~n~~vkVlLISTkAGgeGLNLt~An~VIilD~~WNPs~e~QAIGRv 1241 (1360)
|+.+.+++| +++..+|+.+++.|+++ .++ +|++|+++++||||+.+++||+||++|||..+.|++||+
T Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~---~~~-vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~ 460 (494)
T 1wp9_A 385 GIKAKRFVGQASKENDRGLSQREQKLILDEFARG---EFN-VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRT 460 (494)
T ss_dssp TCCEEEECCSSCC-------CCHHHHHHHHHHHT---SCS-EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTS
T ss_pred CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC---CCE-EEEECCCCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 9980799656654444458999999999998669---946-999888412588714379899928988789999987522
Q ss_pred HHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 430998868999996189999999999999999999
Q 000672 1242 WRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAA 1277 (1360)
Q Consensus 1242 ~RiGQkK~V~VyrLia~gTIEEkI~~rq~~K~~La~ 1277 (1360)
+|.|| +.+|+|++.+|+|++++.++..|..++.
T Consensus 461 ~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 461 GRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp CSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred CCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 57788---4699999569878999998887898730
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=355.46 Aligned_cols=258 Identities=29% Similarity=0.386 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCC
Q ss_conf 76543355553119996289997339999999999999750554543223788742999999999994481000000016
Q 000672 975 FVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK 1054 (1360)
Q Consensus 975 fv~Rrtk~~v~~~LP~k~e~vi~v~Lt~~Q~~LY~~ll~~~~~~~~~~~~~~~~~s~l~~l~~Lrqic~hP~Ll~~~~~~ 1054 (1360)
--+||++++|..+||++.+++++|+|++.|+.+|+.++..................++..++.||++|+||.++....
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~-- 89 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE-- 89 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC--
T ss_pred CCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCC--
T ss_conf 564164877875199977999981899999999999999999999740352128899999999999848998846873--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99997555578874334421112688755012101799985201233444321001112355705999999999621199
Q 000672 1055 GYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMG 1134 (1360)
Q Consensus 1055 ~~~~~ed~~d~~~d~~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~~g 1134 (1360)
.....|+|+..|.++|..+...+
T Consensus 90 ---------------------------------------------------------~~~~~s~K~~~L~~ll~~~~~~~ 112 (271)
T 1z5z_A 90 ---------------------------------------------------------QSVRRSGKMIRTMEIIEEALDEG 112 (271)
T ss_dssp ---------------------------------------------------------CCSTTCHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------------------------------CCCCCCHHHHHHHHHHHHHHHCC
T ss_conf ---------------------------------------------------------22346899999999999998679
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
Q ss_conf 92999917642699999998309999987533237971898248989999999999980889998218994143222467
Q 000672 1135 DKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGI 1214 (1360)
Q Consensus 1135 ~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~g~~~~~Gi~~~rLdGsts~~eRe~iI~~Fn~~~n~~vkVlLISTkAGgeGL 1214 (1360)
+|+||||+|+.+++.|+.+|.. ..|+.+.+++|+++..+|+.++++|+++ +.++|||+||++||+||
T Consensus 113 ~kvlIFs~~~~~~~~l~~~L~~-----------~~g~~~~~l~G~~~~~~R~~~i~~F~~~--~~~~v~L~st~~~g~Gl 179 (271)
T 1z5z_A 113 DKIAIFTQFVDMGKIIRNIIEK-----------ELNTEVPFLYGELSKKERDDIISKFQNN--PSVKFIVLSVKAGGFGI 179 (271)
T ss_dssp CCEEEEESCHHHHHHHHHHHHH-----------HHCSCCCEECTTSCHHHHHHHHHHHHHC--TTCCEEEEECCTTCCCC
T ss_pred CEEEEEECCHHHHHHHHHHHHH-----------HCCCCEEEEECCCCHHHHHHHHHHHCCC--CCCCEEEEEHHHHCCCC
T ss_conf 9699995519999999999987-----------3398479997999999999999983289--99978997223515886
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHH
Q ss_conf 8667897999929999427999959574309988689999961899999999999999999998814221-023589999
Q 000672 1215 NLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQ-VHRTISKEE 1293 (1360)
Q Consensus 1215 NLt~An~VIilD~~WNPs~e~QAIGRv~RiGQkK~V~VyrLia~gTIEEkI~~rq~~K~~La~~Vvd~~~-~~r~ls~~E 1293 (1360)
||++|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+||+|++++..|..+++.+++.+. ....++.+|
T Consensus 180 nl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~ 259 (271)
T 1z5z_A 180 NLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEE 259 (271)
T ss_dssp CCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHHTSCHHH
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHH
T ss_conf 76448999997999985189999985232389985699998549889999999999999999999716705432389999
Q ss_pred HHHHHCCCCCC
Q ss_conf 98701589998
Q 000672 1294 MLHLFEFGDDE 1304 (1360)
Q Consensus 1294 L~eLF~~~~d~ 1304 (1360)
|.+||+++++.
T Consensus 260 l~~l~~~~~~~ 270 (271)
T 1z5z_A 260 LRKVIELSVGG 270 (271)
T ss_dssp HHHHHSCCCTT
T ss_pred HHHHHCCCCCC
T ss_conf 99996558899
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=346.22 Aligned_cols=377 Identities=20% Similarity=0.187 Sum_probs=266.9
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECH-HHHHHH
Q ss_conf 2212099999999999999985643037899844699909882289999999999988302589726999062-469999
Q 000672 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPV-NVLHNW 799 (1360)
Q Consensus 721 ~~~LkphQ~eGV~~Lle~~~~sl~r~~~~~~g~GgILADeMGLGKTlQaIAlI~~ll~~~~~~~k~vLIVvP~-sLl~QW 799 (1360)
...|+|||.+++.+++ .+.++||+++||+|||++++.++... .+++|||||. +|+.||
T Consensus 91 ~~~l~~~Q~~ai~~i~--------------~~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~ 149 (472)
T 2fwr_A 91 EISLRDYQEKALERWL--------------VDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQW 149 (472)
T ss_dssp CCCBCHHHHHHHHHHT--------------TTTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--------------HCCCEEEEECCCCCHHHHHHHHHHHC-------CCCEEEEECCHHHHHHH
T ss_conf 9986889999999999--------------65987999699998899999999980-------99999998799999999
Q ss_pred HHHHHHHCCCCCCCEE-EEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999985899999809-999358536699999999851698999801310012346321113468998754127988999
Q 000672 800 KQEFMKWRPSELKPLR-VFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1360)
Q Consensus 800 ~~Ei~kw~p~~~~~l~-V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~l~~~~~~~~~~~~~~~~~lL~~~~dlVI 878 (1360)
.++|.+| + +. +..+++... ...+|+|+||+++.... ..+...|++||
T Consensus 150 ~~~~~~~-~-----~~~v~~~~g~~~-----------~~~~Ivv~T~~~l~~~~---------------~~~~~~~~liI 197 (472)
T 2fwr_A 150 KERLGIF-G-----EEYVGEFSGRIK-----------ELKPLTVSTYDSAYVNA---------------EKLGNRFMLLI 197 (472)
T ss_dssp HHHGGGG-C-----GGGEEEBSSSCB-----------CCCSEEEEEHHHHHHTH---------------HHHTTTCSEEE
T ss_pred HHHHHHC-C-----CCCEEEECCCCC-----------CCCCEEEEECHHHHHHH---------------HHHCCCCCEEE
T ss_conf 9999967-9-----963699878767-----------76778999768999779---------------97368777899
Q ss_pred EECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 90883238840189999861336509998278898733567865321026999995889852058744678899873789
Q 000672 879 CDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDV 958 (1360)
Q Consensus 879 iDEAH~iKN~~Sk~skal~~L~a~~RilLTGTPIqNnl~EL~sLL~FL~p~~lg~~~eF~~~f~~Pi~~g~~~~st~~~~ 958 (1360)
+||||++.+.... ..+..+.+.++++|||||.+++-.+.
T Consensus 198 vDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~~--------------------------------------- 236 (472)
T 2fwr_A 198 FDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRHE--------------------------------------- 236 (472)
T ss_dssp EETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGGG---------------------------------------
T ss_pred EECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHHH---------------------------------------
T ss_conf 9897578976899--99973577818999327668897789---------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998879999999758765433555531-199962899973399999999999997505545432237887429999999
Q 000672 959 KIMNQRSHILYEQLKGFVQRMDMNVVKK-DLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQA 1037 (1360)
Q Consensus 959 ~~~~~r~~~L~~~L~~fv~Rrtk~~v~~-~LP~k~e~vi~v~Lt~~Q~~LY~~ll~~~~~~~~~~~~~~~~~s~l~~l~~ 1037 (1360)
.+...+.+.+.+....++.. .+++.....+.+.+++.++..|+.+..........
T Consensus 237 --------~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------- 292 (472)
T 2fwr_A 237 --------ILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRA---------------- 292 (472)
T ss_dssp --------SHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSS----------------
T ss_pred --------HHHHHHCCEEEECCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH----------------
T ss_conf --------99997298576547898706767881899998589989999999999999999986----------------
Q ss_pred HHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99994481000000016999975555788743344211126887550121017999852012334443210011123557
Q 000672 1038 LAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYS 1117 (1360)
Q Consensus 1038 Lrqic~hP~Ll~~~~~~~~~~~ed~~d~~~d~~~~~~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S 1117 (1360)
..+.. .....+. .+................ ...........+
T Consensus 293 -------~~~~~-~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 334 (472)
T 2fwr_A 293 -------RGITL-RRAEDFN----------------------------KIVMASGYDERAYEALRA--WEEARRIAFNSK 334 (472)
T ss_dssp -------CCCTT-TCCSSST----------------------------TTTTTTCCSSSSSTTTHH--HHHHHHHHHSCS
T ss_pred -------CCCCC-CCHHHHH----------------------------HHHHHHCCCHHHHHHHHH--HHHHHHHHHCCH
T ss_conf -------47542-2446689----------------------------999872369889999999--999999763373
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 05999999999621199929999176426999999983099999875332379718982489899999999999808899
Q 000672 1118 GKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLN 1197 (1360)
Q Consensus 1118 ~Kl~~L~eiL~~~~~~g~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~g~~~~~Gi~~~rLdGsts~~eRe~iI~~Fn~~~n 1197 (1360)
.|+..|.+++.. ..+.|+|||+++..+++.+...|. +..++|+++..+|+.+++.|++
T Consensus 335 ~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----------------~~~~~g~~~~~~R~~~~~~F~~--- 392 (472)
T 2fwr_A 335 NKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----------------IPAITHRTSREEREEILEGFRT--- 392 (472)
T ss_dssp HHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----------------CCBCCSSSCSHHHHTHHHHHHH---
T ss_pred HHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHC-----------------CCEEECCCCHHHHHHHHHHHHC---
T ss_conf 899999999985--789838999797999999999748-----------------6556289999999999999867---
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC-CCEEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 98218994143222467866789799992999942799995957430998-86899999618999999999999999999
Q 000672 1198 KRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQT-KPVFAYRLMAHGTMEEKIYKRQVTKEGLA 1276 (1360)
Q Consensus 1198 ~~vkVlLISTkAGgeGLNLt~An~VIilD~~WNPs~e~QAIGRv~RiGQk-K~V~VyrLia~gTIEEkI~~rq~~K~~La 1276 (1360)
+.++ +|++|+++++|+|++.++.||++|++|||..+.|++||++|.||. +.|++|+|++++|+|+++..++..|.+++
T Consensus 393 g~~~-vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 393 GRFR-AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp SSCS-BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred CCCC-EEEECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 9988-899857051484620286899989999888999987631577799853999999819985379999998765058
No 8
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=336.90 Aligned_cols=501 Identities=14% Similarity=0.119 Sum_probs=279.5
Q ss_pred CCCCCH--HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC-CCCCEEEEE
Q ss_conf 369400--22120999999999999999856430378998446999098822899999999999883025-897269990
Q 000672 715 RIPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVT 791 (1360)
Q Consensus 715 ~vP~~l--~~~LkphQ~eGV~~Lle~~~~sl~r~~~~~~g~GgILADeMGLGKTlQaIAlI~~ll~~~~~-~~k~vLIVv 791 (1360)
..|..+ ...|+|||.+++.+++ .+.++|++++||+|||++++..+...+..... ..+++||||
T Consensus 238 ~~~~~~~g~~~l~~~Q~~~i~~~l--------------~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~ 303 (797)
T 4a2q_A 238 GKPPPVYETKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 303 (797)
T ss_dssp ----------CCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEEC
T ss_pred CCCHHHCCCCCCCHHHHHHHHHHH--------------HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 485442388999999999999998--------------099989996999729999999999999846656799699996
Q ss_pred C-HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 6-246999999999858999998099993585366999999998516989998013100123463211134689987541
Q 000672 792 P-VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHAL 870 (1360)
Q Consensus 792 P-~sLl~QW~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~l~~~~~~~~~~~~~~~~~lL 870 (1360)
| ..|+.||.++|.+|++.. .+++..+++...... ....+....+|+|+|++.+.......... .
T Consensus 304 Pt~~L~~Q~~~~~~~~~~~~--~~~v~~~~g~~~~~~--~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~-----------~ 368 (797)
T 4a2q_A 304 TKVPVYEQQKNVFKHHFERQ--GYSVQGISGENFSNV--SVEKVIEDSDIIVVTPQILVNSFEDGTLT-----------S 368 (797)
T ss_dssp SSHHHHHHHHHHHHHHHGGG--TCCEEEECCC-------CHHHHHHTCSEEEECHHHHHHHHHSSSCC-----------C
T ss_pred CCHHHHHHHHHHHHHHCCCC--CCEEEEEECCCCHHH--HHHHHHCCCCEEEECHHHHHHHHHHCCCC-----------C
T ss_conf 98999999999999861437--946999969962324--69974079999997669999999826546-----------5
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHC---------CCCEEEEEECCCCCCCHHHHHHHHH-------HHCCC----C
Q ss_conf 27988999908832388401899998613---------3650999827889873356786532-------10269----9
Q 000672 871 QDGPDILVCDEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLMEYYCMVD-------FVREG----F 930 (1360)
Q Consensus 871 ~~~~dlVIiDEAH~iKN~~Sk~skal~~L---------~a~~RilLTGTPIqNnl~EL~sLL~-------FL~p~----~ 930 (1360)
...|++||+||||++.+..... ..+..+ ...++++|||||.+++..++...++ .+.+. .
T Consensus 369 ~~~~~~iViDEaH~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~ 447 (797)
T 4a2q_A 369 LSIFTLMIFDECHNTTGNHPYN-VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTV 447 (797)
T ss_dssp GGGCSEEEETTGGGCSTTSHHH-HHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECC
T ss_pred CCCCCEEEEECCCCCCCCCCHH-HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 1337789998863558876499-999999997631478878599972775545522489999999999985498488545
Q ss_pred CCCHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 9995889852058744678899--87378999988799999997587654335555311999628999733999999999
Q 000672 931 LGSSHEFRNRFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLY 1008 (1360)
Q Consensus 931 lg~~~eF~~~f~~Pi~~g~~~~--st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vi~v~Lt~~Q~~LY 1008 (1360)
......+...+..|........ ...............+...+..+...... ..+| ...+.. ..|
T Consensus 448 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l----~~~~-------~~~~g~---~~~ 513 (797)
T 4a2q_A 448 RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTL----SQNS-------KKDFGT---QNY 513 (797)
T ss_dssp CTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC-----------------------CCSS---HHH
T ss_pred CCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHC-------CCCCCC---HHH
T ss_conf 43178899735888548884577778678999999999999999998756776----5300-------001140---567
Q ss_pred HHHHHHH----CCC--CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999750----554--5432237887429999999999944810000000169999755557887433442111268875
Q 000672 1009 KRFLDLH----GFT--NDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPR 1082 (1360)
Q Consensus 1009 ~~ll~~~----~~~--~~~~~~~~~~~s~l~~l~~Lrqic~hP~Ll~~~~~~~~~~~ed~~d~~~d~~~~~~~~~~e~~~ 1082 (1360)
..++... ... ............+......+++......+...... ...... ...............
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~------~~~~~~--l~~~~~~~~~~~~~~ 585 (797)
T 4a2q_A 514 EHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI------IDALSY--LTEFFTNVKNGPYTE 585 (797)
T ss_dssp HHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH------HHHHHH--HHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH------HHHHHH--HHHHHHHHHCCCCCH
T ss_conf 789999999877740343202567999999999999999988765413258------889999--999999875047668
Q ss_pred CCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 5012101799985201233444321001112355705999999999621--19992999917642699999998309999
Q 000672 1083 NMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRP 1160 (1360)
Q Consensus 1083 ~~~d~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~--~~g~KVLIFSQ~~~tLdlLe~~L~~l~~~ 1160 (1360)
....... .+ ......+. .........++|+..|.++|.... ..+.|+|||+++..+++.|..+|......
T Consensus 586 ~~~~l~~------~~-~~~~~~l~-~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~ 657 (797)
T 4a2q_A 586 LEQHLTA------KF-QEKEPELI-ALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL 657 (797)
T ss_dssp HHHHHHH------HH-HTTHHHHH-HHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHH------HH-HHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 9999999------99-99999998-7630788899599999999999850589970899979589999999999747564
Q ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 98753323797189824898999999999998088999821899414322246786678979999299994279999595
Q 000672 1161 GKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYR 1240 (1360)
Q Consensus 1161 ~~~g~~~~~Gi~~~rLdGsts~~eRe~iI~~Fn~~~n~~vkVlLISTkAGgeGLNLt~An~VIilD~~WNPs~e~QAIGR 1240 (1360)
.........|..+..++|+++..+|..++++|++ ++.++ +|++|+++++|||++.+++||+||+||||..+.|++||
T Consensus 658 ~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~--~g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR 734 (797)
T 4a2q_A 658 NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT--SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR 734 (797)
T ss_dssp CSCCCEEC------------------------------CCS-EEEEECC-------CCCSEEEEESCCSCHHHHHTC---
T ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC--CCCCE-EEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC
T ss_conf 6655218984477545789899999999998513--69704-99974805447975108989994899988999985388
Q ss_pred HHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7430998868999996189999999999999999999881422
Q 000672 1241 AWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQ 1283 (1360)
Q Consensus 1241 v~RiGQkK~V~VyrLia~gTIEEkI~~rq~~K~~La~~Vvd~~ 1283 (1360)
|+.+++.+|.|++.++++++ +..+..|..++..++..-
T Consensus 735 ----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~l 772 (797)
T 4a2q_A 735 ----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEKI 772 (797)
T ss_dssp --------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf ----87878659999728768899-998889999999999987
No 9
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=334.97 Aligned_cols=490 Identities=14% Similarity=0.143 Sum_probs=274.0
Q ss_pred CCCCH--HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC-CCCCEEEEEC
Q ss_conf 69400--22120999999999999999856430378998446999098822899999999999883025-8972699906
Q 000672 716 IPSSI--SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNL-GLRTALIVTP 792 (1360)
Q Consensus 716 vP~~l--~~~LkphQ~eGV~~Lle~~~~sl~r~~~~~~g~GgILADeMGLGKTlQaIAlI~~ll~~~~~-~~k~vLIVvP 792 (1360)
.|..+ ...|+|||.+++.+++ .+.++|++++||+|||++++..+...+..... ..+++|||+|
T Consensus 239 ~~~~l~~~~~~r~~Q~~ai~~il--------------~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~P 304 (936)
T 4a2w_A 239 KPPPVYETKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (936)
T ss_dssp ---------CCCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHH--------------CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 76533478987799999999998--------------0998999969984599999999999997365568985999969
Q ss_pred -HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf -2469999999998589999980999935853669999999985169899980131001234632111346899875412
Q 000672 793 -VNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQ 871 (1360)
Q Consensus 793 -~sLl~QW~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~l~~~~~~~~~~~~~~~~~lL~ 871 (1360)
..|+.||..+|.+|++.. .+++..++|....... ...+....+|+|+||+.+.......... ..
T Consensus 305 t~~L~~Q~~~~~~~~~~~~--~~~v~~~~G~~~~~~~--~~~~~~~~~IvI~Tp~~L~~~l~~~~~~-----------~l 369 (936)
T 4a2w_A 305 KVPVYEQQKNVFKHHFERQ--GYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTLT-----------SL 369 (936)
T ss_dssp SHHHHHHHHHHHHHHHHTT--TCCEEEECCC-----C--CHHHHHHCSEEEECHHHHHHHHHSSSCC-----------CG
T ss_pred CHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCHHHH--HHHHCCCCCEEEECHHHHHHHHHCCCCC-----------CC
T ss_conf 8999999999999971216--9559999799631257--8974169999994499999998717645-----------33
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHC---------CCCEEEEEECCCCCCCHHHHHHHHHH-------HCCC----CC
Q ss_conf 7988999908832388401899998613---------36509998278898733567865321-------0269----99
Q 000672 872 DGPDILVCDEAHMIKNTRADTTQALKQV---------KCQRRIALTGSPLQNNLMEYYCMVDF-------VREG----FL 931 (1360)
Q Consensus 872 ~~~dlVIiDEAH~iKN~~Sk~skal~~L---------~a~~RilLTGTPIqNnl~EL~sLL~F-------L~p~----~l 931 (1360)
..|++||+||||++.+..+.. ..+..+ ...++++|||||.+++..++...++. +... ..
T Consensus 370 ~~~~liViDEaH~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~ 448 (936)
T 4a2w_A 370 SIFTLMIFDECHNTTGNHPYN-VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVR 448 (936)
T ss_dssp GGCSEEEEETGGGCSTTCHHH-HHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCC
T ss_pred CCCCEEEEECCCCCCCCCCHH-HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 678799998731359986699-9999999986313788673998638855454020899999999999854971553465
Q ss_pred CCHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 995889852058744678899--873789999887999999975876543355553119996289997339999999999
Q 000672 932 GSSHEFRNRFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYK 1009 (1360)
Q Consensus 932 g~~~eF~~~f~~Pi~~g~~~~--st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vi~v~Lt~~Q~~LY~ 1009 (1360)
.....+...+..|........ ...............+...+..+.. ...++... ...+... .|+
T Consensus 449 ~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~-------~~~l~~~~----~~~~g~~---~y~ 514 (936)
T 4a2w_A 449 ENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAY-------VDTLSQNS----KKDFGTQ---NYE 514 (936)
T ss_dssp SSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC-----------------------CCSSH---HHH
T ss_pred CCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHCC----CCCCCHH---HHH
T ss_conf 448999875367762377336556757999999999999999998876-------65553202----2332257---799
Q ss_pred HHHHHHC-----CC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9997505-----54-54322378874299999999999448100000001699997555578874334421112688755
Q 000672 1010 RFLDLHG-----FT-NDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRN 1083 (1360)
Q Consensus 1010 ~ll~~~~-----~~-~~~~~~~~~~~s~l~~l~~Lrqic~hP~Ll~~~~~~~~~~~ed~~d~~~d~~~~~~~~~~e~~~~ 1083 (1360)
..+.... .. ............+......++++ ++...+.... .. .. ... .
T Consensus 515 ~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al~i~~~~--~~---~~--------~~~----------~ 570 (936)
T 4a2w_A 515 HWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDA--RI---ID--------ALS----------Y 570 (936)
T ss_dssp HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS--CH---HH--------HHH----------H
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCH--HH---HH--------HHH----------H
T ss_conf 99999999887740553210357999999999999998-8887500204--28---88--------999----------9
Q ss_pred CHHHHCC--CCCCCCCHHHHH-------HHHHHHCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHH
Q ss_conf 0121017--999852012334-------44321001112355705999999999621--199929999176426999999
Q 000672 1084 MNDFLQG--KNDDGFFQKDWW-------NDLLHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEF 1152 (1360)
Q Consensus 1084 ~~d~~~~--~~~~~~~~~~~~-------~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~--~~g~KVLIFSQ~~~tLdlLe~ 1152 (1360)
...+... ............ ..+.. ........++|+..|.++|.... ..+.|+|||++++.+++.|..
T Consensus 571 l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~-~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~ 649 (936)
T 4a2w_A 571 LTEFFTNVKNGPYTELEQHLTAKFQEKEPELIA-LSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKK 649 (936)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-HHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 999999876325887899999989999999997-6405677897999999999998535899749999697999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 98309999987533237971898248989999999999980889998218994143222467866789799992999942
Q 000672 1153 YLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPT 1232 (1360)
Q Consensus 1153 ~L~~l~~~~~~g~~~~~Gi~~~rLdGsts~~eRe~iI~~Fn~~~n~~vkVlLISTkAGgeGLNLt~An~VIilD~~WNPs 1232 (1360)
+|...............|..+..++|+++..+|..++++|++ ++.++ +|++|+++++|||++.++.||+||+||||.
T Consensus 650 ~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~--~g~~~-VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~ 726 (936)
T 4a2w_A 650 CMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT--SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVT 726 (936)
T ss_dssp HHHHCSTTSSCCCEEC------------------------------CCS-EEEEECC------CCCCSEEEEESCCSCSH
T ss_pred HHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHC--CCCEE-EEEEECCHHCCCCCHHCCEEEEECCCCCHH
T ss_conf 986373536666169965787656788899999999998631--59815-999807264277605589899938999889
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79999595743099886899999618999999999999999999988142
Q 000672 1233 YDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282 (1360)
Q Consensus 1233 ~e~QAIGRv~RiGQkK~V~VyrLia~gTIEEkI~~rq~~K~~La~~Vvd~ 1282 (1360)
.+.|++|| ||.+++.+|.|++.+|++++.+ .+..|..++..++..
T Consensus 727 ~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 727 KMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp HHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 99996487----7888877999986988999999-988999999999998
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=323.54 Aligned_cols=489 Identities=14% Similarity=0.130 Sum_probs=272.2
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC-CCCEEEEECH-HHHHH
Q ss_conf 221209999999999999998564303789984469990988228999999999998830258-9726999062-46999
Q 000672 721 SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLG-LRTALIVTPV-NVLHN 798 (1360)
Q Consensus 721 ~~~LkphQ~eGV~~Lle~~~~sl~r~~~~~~g~GgILADeMGLGKTlQaIAlI~~ll~~~~~~-~k~vLIVvP~-sLl~Q 798 (1360)
..+|+|||.+++.+++ .+.++|++++||+|||++++..+...+.....+ .+++|||||. .|+.|
T Consensus 5 ~~~~~~~Q~~~i~~~~--------------~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 70 (556)
T 4a2p_A 5 TKKARSYQIELAQPAI--------------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQ 70 (556)
T ss_dssp ---CCHHHHHHHHHHH--------------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--------------CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHH
T ss_conf 7787799999999997--------------49989998199971899999999999983745679869999288999999
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 99999985899999809999358536699999999851698999801310012346321113468998754127988999
Q 000672 799 WKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILV 878 (1360)
Q Consensus 799 W~~Ei~kw~p~~~~~l~V~~~~~~~~~~r~~~l~~~~~~~~ViIisY~~lr~l~~~~~~~~~~~~~~~~~lL~~~~dlVI 878 (1360)
|.+++.++++.. .+.+..+.+...... ....+....+|+|+|++.+.......... ....+++||
T Consensus 71 ~~~~~~~~~~~~--~~~~~~~~g~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~~~~~-----------~~~~~~~vV 135 (556)
T 4a2p_A 71 QKNVFKHHFERQ--GYSVQGISGENFSNV--SVEKVIEDSDIIVVTPQILVNSFEDGTLT-----------SLSIFTLMI 135 (556)
T ss_dssp HHHHHHHHHGGG--TCCEEECCCC-------CHHHHHHHCSEEEECHHHHHHHHHSSSCC-----------CSTTCSEEE
T ss_pred HHHHHHHHHCCC--CCEEEEEECCCCCCH--HHHHHHCCCCEEEECHHHHHHHHHHCCCC-----------CCCCCCEEE
T ss_conf 999999872406--945999828987422--28986179999998899999999837502-----------503077999
Q ss_pred EECCCCCCCCCHHHHHHHHHC--------CCCEEEEEECCCCCCCHHHHHH-------HHHHHCCC----CCCCHHHHHH
Q ss_conf 908832388401899998613--------3650999827889873356786-------53210269----9999588985
Q 000672 879 CDEAHMIKNTRADTTQALKQV--------KCQRRIALTGSPLQNNLMEYYC-------MVDFVREG----FLGSSHEFRN 939 (1360)
Q Consensus 879 iDEAH~iKN~~Sk~skal~~L--------~a~~RilLTGTPIqNnl~EL~s-------LL~FL~p~----~lg~~~eF~~ 939 (1360)
+||||++.+...........+ ...++++|||||.+++..++.. +...+.+. .......+..
T Consensus 136 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~ 215 (556)
T 4a2p_A 136 FDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR 215 (556)
T ss_dssp EETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHCCHHHHHH
T ss_conf 98875358864599999999985301368887699994785667516699999999999985398484333202677874
Q ss_pred HCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHC-
Q ss_conf 2058744678899--8737899998879999999758765433555531199962899973399999999999997505-
Q 000672 940 RFQNPIENGQHTN--STSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHG- 1016 (1360)
Q Consensus 940 ~f~~Pi~~g~~~~--st~~~~~~~~~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vi~v~Lt~~Q~~LY~~ll~~~~- 1016 (1360)
.+..|........ ...............+...+..+.. +...... ....+. ...|...+....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~g---~~~~~~~~~~~~~ 281 (556)
T 4a2p_A 216 FMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYS----------VDTLSQN-SKKDFG---TQNYEHWIVVTQR 281 (556)
T ss_dssp HTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC--------------------CCCS---SHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH----------HHHHHCC-CCCCCC---HHHHHHHHHHHHH
T ss_conf 2799853799827876775999999999999999988863----------2012103-333443---3567899999999
Q ss_pred ---CC--CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf ---54--5432237887429999999999944810000000169999755557887433442111268875501210179
Q 000672 1017 ---FT--NDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGK 1091 (1360)
Q Consensus 1017 ---~~--~~~~~~~~~~~s~l~~l~~Lrqic~hP~Ll~~~~~~~~~~~ed~~d~~~d~~~~~~~~~~e~~~~~~d~~~~~ 1091 (1360)
.. ............+......++.. ++........ .. .. ...... ..........
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~--~~---~~--------~~~~l~------~~~~~~~~~~ 341 (556)
T 4a2p_A 282 KCRLLQLEDKEEESRICRALFICTEHLRKY-NDALIISEDA--RI---ID--------ALSYLT------EFFTNVKNGP 341 (556)
T ss_dssp HHHHC---CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS--CH---HH--------HHHHHH------HHHHHHHHSC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HH---HH--------HHHHHH------HHHHHHHHCC
T ss_conf 877640543201678999999999999999-9999886112--07---89--------999999------9999987337
Q ss_pred CCCCCCHHHHHHHH------HHHCCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99852012334443------21001112355705999999999621--19992999917642699999998309999987
Q 000672 1092 NDDGFFQKDWWNDL------LHEHTYKELDYSGKMVLLLDILTMCS--NMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQ 1163 (1360)
Q Consensus 1092 ~~~~~~~~~~~~~l------l~~~~~~~~~~S~Kl~~L~eiL~~~~--~~g~KVLIFSQ~~~tLdlLe~~L~~l~~~~~~ 1163 (1360)
...........+ +..........++|+..|.++|.... ..+.|+|||+++..+++.|..+|.........
T Consensus 342 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~ 419 (556)
T 4a2p_A 342 --YTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI 419 (556)
T ss_dssp --CCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSC
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEE
T ss_conf --987899999987667887642103789999699999999999834799854999976589999999999858775500
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 53323797189824898999999999998088999821899414322246786678979999299994279999595743
Q 000672 1164 GKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWR 1243 (1360)
Q Consensus 1164 g~~~~~Gi~~~rLdGsts~~eRe~iI~~Fn~~~n~~vkVlLISTkAGgeGLNLt~An~VIilD~~WNPs~e~QAIGRv~R 1243 (1360)
......|..+..++|+++..+|+.++++|++ ++.++ +|++|+++++|||++.+++||+||+||||..+.|++||
T Consensus 420 ~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~--~g~~~-vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR--- 493 (556)
T 4a2p_A 420 KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT--SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR--- 493 (556)
T ss_dssp CEEC--------------------------------CC-EEEEEC-----------CEEEEETCCSCHHHHHHC------
T ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHCC--CCCEE-EEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC---
T ss_conf 0147873677655656698999999998404--69658-99976704337775217889991899978899886387---
Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 099886899999618999999999999999999988142
Q 000672 1244 YGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDR 1282 (1360)
Q Consensus 1244 iGQkK~V~VyrLia~gTIEEkI~~rq~~K~~La~~Vvd~ 1282 (1360)
|+.+++.+|.|++.++++++ +..+..|..++..++..
T Consensus 494 -gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~ 530 (556)
T 4a2p_A 494 -GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 530 (556)
T ss_dssp ------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred -CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHHH
T ss_conf -87888418999827636777-77557999999999997
Done!