Query 000673
Match_columns 1358
No_of_seqs 564 out of 4706
Neff 7.5
Searched_HMMs 46136
Date Mon Apr 1 21:47:55 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0319 WD40-repeat-containing 100.0 2.9E-39 6.4E-44 379.0 40.0 544 16-764 62-617 (775)
2 KOG0271 Notchless-like WD40 re 100.0 5.6E-37 1.2E-41 335.9 28.0 363 13-705 112-479 (480)
3 KOG0319 WD40-repeat-containing 100.0 6.6E-36 1.4E-40 350.9 38.0 508 14-708 103-620 (775)
4 KOG0306 WD40-repeat-containing 100.0 9.3E-33 2E-37 323.8 45.5 571 17-764 66-662 (888)
5 KOG0271 Notchless-like WD40 re 100.0 4.4E-32 9.5E-37 297.6 27.6 209 505-764 243-479 (480)
6 KOG0306 WD40-repeat-containing 100.0 4.8E-29 1E-33 292.8 46.2 505 14-708 105-665 (888)
7 KOG0318 WD40 repeat stress pro 100.0 1.7E-26 3.6E-31 262.9 51.0 536 13-765 56-601 (603)
8 KOG0272 U4/U6 small nuclear ri 100.0 2E-29 4.3E-34 280.8 23.5 129 555-705 330-458 (459)
9 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-29 5.3E-34 280.2 20.3 224 478-764 234-458 (459)
10 KOG0291 WD40-repeat-containing 100.0 3E-25 6.5E-30 261.2 54.6 515 21-771 19-555 (893)
11 KOG0291 WD40-repeat-containing 100.0 1.1E-25 2.4E-30 264.8 50.6 495 1-716 84-621 (893)
12 KOG1408 WD40 repeat protein [F 100.0 4.6E-26 9.9E-31 264.8 38.3 599 6-766 59-713 (1080)
13 KOG0318 WD40 repeat stress pro 100.0 4.6E-25 9.9E-30 251.3 44.3 406 16-707 190-602 (603)
14 KOG1539 WD repeat protein [Gen 99.9 4.1E-24 8.8E-29 254.6 44.6 552 8-772 68-654 (910)
15 KOG0263 Transcription initiati 99.9 3.1E-26 6.8E-31 273.3 26.8 210 501-769 443-652 (707)
16 KOG1063 RNA polymerase II elon 99.9 9.5E-24 2.1E-28 247.2 44.0 569 14-730 52-675 (764)
17 KOG0286 G-protein beta subunit 99.9 2.5E-24 5.4E-29 230.6 31.5 202 503-763 139-342 (343)
18 KOG0281 Beta-TrCP (transducin 99.9 2.5E-26 5.5E-31 249.1 15.4 140 528-711 333-481 (499)
19 KOG0295 WD40 repeat-containing 99.9 3.7E-25 8.1E-30 242.9 23.5 101 592-706 305-405 (406)
20 KOG0295 WD40 repeat-containing 99.9 1.4E-24 3E-29 238.5 22.8 209 503-764 187-404 (406)
21 KOG0265 U5 snRNP-specific prot 99.9 1.3E-24 2.9E-29 233.7 20.9 238 504-817 42-279 (338)
22 KOG0281 Beta-TrCP (transducin 99.9 5.7E-26 1.2E-30 246.4 10.2 268 477-827 209-479 (499)
23 KOG0286 G-protein beta subunit 99.9 5.3E-23 1.2E-27 220.5 32.5 162 503-705 180-343 (343)
24 KOG0279 G protein beta subunit 99.9 6.9E-24 1.5E-28 226.3 25.1 278 478-832 31-311 (315)
25 KOG0273 Beta-transducin family 99.9 4E-23 8.8E-28 233.2 30.0 170 504-707 354-523 (524)
26 KOG1539 WD repeat protein [Gen 99.9 3.4E-21 7.5E-26 229.9 45.6 514 3-708 103-649 (910)
27 KOG0279 G protein beta subunit 99.9 3.5E-23 7.6E-28 220.9 23.7 215 501-769 7-225 (315)
28 KOG0273 Beta-transducin family 99.9 1.6E-22 3.4E-27 228.5 30.1 316 277-727 177-501 (524)
29 KOG0263 Transcription initiati 99.9 1.4E-23 3.1E-28 250.7 21.6 220 504-767 373-608 (707)
30 KOG0265 U5 snRNP-specific prot 99.9 2.8E-22 6E-27 215.9 28.8 139 528-704 189-335 (338)
31 KOG0276 Vesicle coat complex C 99.9 2E-23 4.3E-28 241.3 20.7 221 484-766 34-257 (794)
32 KOG0315 G-protein beta subunit 99.9 6.2E-21 1.3E-25 200.5 31.6 127 528-678 182-309 (311)
33 KOG0313 Microtubule binding pr 99.9 7.8E-22 1.7E-26 218.0 25.3 160 504-707 255-418 (423)
34 KOG0300 WD40 repeat-containing 99.9 9.8E-23 2.1E-27 218.9 17.4 251 500-827 139-430 (481)
35 cd00200 WD40 WD40 domain, foun 99.9 2.4E-20 5.2E-25 209.5 36.1 140 528-705 150-289 (289)
36 KOG0296 Angio-associated migra 99.9 3.3E-20 7.1E-25 204.5 33.6 118 568-707 281-398 (399)
37 KOG0266 WD40 repeat-containing 99.9 2.1E-21 4.5E-26 238.1 26.5 231 478-766 174-409 (456)
38 KOG0315 G-protein beta subunit 99.9 2.5E-21 5.4E-26 203.4 22.7 203 477-724 53-305 (311)
39 PLN00181 protein SPA1-RELATED; 99.9 3.6E-20 7.9E-25 243.0 39.4 140 528-706 633-792 (793)
40 KOG0301 Phospholipase A2-activ 99.9 1.3E-22 2.9E-27 237.9 14.3 329 481-885 31-363 (745)
41 KOG0293 WD40 repeat-containing 99.9 6.3E-21 1.4E-25 211.9 24.1 85 14-127 222-306 (519)
42 KOG0285 Pleiotropic regulator 99.9 1.8E-21 3.9E-26 212.9 18.6 187 500-728 142-328 (460)
43 KOG0292 Vesicle coat complex C 99.9 4.2E-20 9.2E-25 220.4 31.4 159 16-251 9-167 (1202)
44 KOG0274 Cdc4 and related F-box 99.9 2.4E-21 5.1E-26 237.5 21.5 223 477-769 220-444 (537)
45 KOG0284 Polyadenylation factor 99.9 2.9E-22 6.4E-27 222.8 11.0 224 480-766 113-337 (464)
46 KOG0313 Microtubule binding pr 99.9 1.2E-20 2.6E-25 208.6 23.2 274 430-764 125-416 (423)
47 KOG0266 WD40 repeat-containing 99.9 1E-20 2.2E-25 232.1 24.8 202 508-768 158-366 (456)
48 KOG0285 Pleiotropic regulator 99.9 4.4E-21 9.5E-26 209.9 17.9 201 478-725 166-366 (460)
49 KOG0276 Vesicle coat complex C 99.9 4.3E-20 9.4E-25 213.9 24.3 185 503-725 91-275 (794)
50 KOG0284 Polyadenylation factor 99.8 5.4E-21 1.2E-25 212.8 14.0 216 486-764 161-378 (464)
51 KOG2106 Uncharacterized conser 99.8 2.2E-17 4.8E-22 187.9 42.8 487 13-765 101-625 (626)
52 PTZ00421 coronin; Provisional 99.8 2.6E-19 5.6E-24 219.3 28.4 220 504-768 70-292 (493)
53 KOG0316 Conserved WD40 repeat- 99.8 5.4E-20 1.2E-24 191.9 17.6 221 481-767 35-258 (307)
54 cd00200 WD40 WD40 domain, foun 99.8 4.3E-18 9.3E-23 191.2 34.4 202 504-764 88-289 (289)
55 KOG0282 mRNA splicing factor [ 99.8 2.7E-20 6E-25 211.5 15.7 167 7-251 207-374 (503)
56 KOG0292 Vesicle coat complex C 99.8 5.7E-20 1.2E-24 219.3 19.0 220 484-766 30-280 (1202)
57 KOG0296 Angio-associated migra 99.8 2.8E-18 6.1E-23 189.4 30.2 330 268-765 54-397 (399)
58 KOG0274 Cdc4 and related F-box 99.8 5E-19 1.1E-23 217.1 27.0 217 480-768 266-484 (537)
59 KOG1408 WD40 repeat protein [F 99.8 2.9E-18 6.3E-23 200.4 31.7 190 481-708 522-714 (1080)
60 PTZ00420 coronin; Provisional 99.8 3E-18 6.6E-23 210.9 29.9 205 482-719 51-261 (568)
61 KOG1063 RNA polymerase II elon 99.8 3.6E-17 7.7E-22 192.6 37.2 518 34-766 30-648 (764)
62 PLN00181 protein SPA1-RELATED; 99.8 9.7E-18 2.1E-22 220.2 35.0 249 396-713 482-744 (793)
63 KOG0645 WD40 repeat protein [G 99.8 3.6E-18 7.8E-23 182.1 24.6 207 501-765 6-224 (312)
64 KOG0275 Conserved WD40 repeat- 99.8 5E-20 1.1E-24 198.5 7.0 185 509-728 213-401 (508)
65 KOG0282 mRNA splicing factor [ 99.8 2.8E-19 6E-24 203.4 13.0 226 478-764 230-503 (503)
66 PTZ00421 coronin; Provisional 99.8 6.1E-18 1.3E-22 207.3 24.6 171 565-769 70-248 (493)
67 KOG0316 Conserved WD40 repeat- 99.8 5.6E-18 1.2E-22 177.0 19.4 199 503-764 11-211 (307)
68 PTZ00420 coronin; Provisional 99.8 1.4E-17 3E-22 205.1 26.0 143 559-724 63-214 (568)
69 KOG0275 Conserved WD40 repeat- 99.8 3.5E-19 7.6E-24 192.0 10.3 228 478-764 228-507 (508)
70 KOG0301 Phospholipase A2-activ 99.8 1.1E-17 2.3E-22 197.1 22.6 216 477-766 73-288 (745)
71 KOG0293 WD40 repeat-containing 99.8 7.7E-18 1.7E-22 187.6 20.1 219 500-766 215-513 (519)
72 KOG0645 WD40 repeat protein [G 99.8 6.6E-17 1.4E-21 172.6 25.6 189 478-707 30-225 (312)
73 KOG0283 WD40 repeat-containing 99.8 8E-18 1.7E-22 203.6 21.0 217 503-765 260-531 (712)
74 KOG0277 Peroxisomal targeting 99.8 9.5E-18 2.1E-22 177.3 18.7 230 478-764 76-307 (311)
75 KOG1407 WD40 repeat protein [F 99.8 1.2E-16 2.5E-21 169.7 27.0 127 533-690 167-293 (313)
76 KOG0277 Peroxisomal targeting 99.8 8.1E-18 1.8E-22 177.8 16.9 190 527-766 75-265 (311)
77 KOG0305 Anaphase promoting com 99.8 5.7E-17 1.2E-21 192.3 24.5 220 484-766 238-461 (484)
78 KOG0264 Nucleosome remodeling 99.8 1.9E-17 4.1E-22 188.2 19.3 243 507-793 122-376 (422)
79 KOG0643 Translation initiation 99.8 4.7E-16 1E-20 165.5 27.9 142 528-708 162-318 (327)
80 KOG0310 Conserved WD40 repeat- 99.8 3.5E-17 7.5E-22 186.9 20.2 198 510-766 69-268 (487)
81 KOG1445 Tumor-specific antigen 99.7 4.1E-16 8.8E-21 180.5 28.1 162 521-708 636-799 (1012)
82 KOG0294 WD40 repeat-containing 99.7 6.3E-17 1.4E-21 175.8 19.4 215 501-766 35-281 (362)
83 KOG0308 Conserved WD40 repeat- 99.7 1.1E-16 2.3E-21 187.4 21.7 250 409-709 37-287 (735)
84 KOG0973 Histone transcription 99.7 2E-16 4.4E-21 195.8 25.3 236 502-765 62-311 (942)
85 KOG0288 WD40 repeat protein Ti 99.7 7E-17 1.5E-21 180.7 18.1 224 478-763 190-458 (459)
86 KOG0267 Microtubule severing p 99.7 3.6E-18 7.8E-23 201.5 8.0 204 505-767 24-227 (825)
87 KOG0641 WD40 repeat protein [G 99.7 8.2E-15 1.8E-19 152.0 31.5 205 504-765 131-348 (350)
88 KOG0264 Nucleosome remodeling 99.7 1.4E-16 3.1E-21 181.1 19.7 216 503-765 171-403 (422)
89 KOG0288 WD40 repeat protein Ti 99.7 1.2E-16 2.6E-21 178.8 17.4 125 557-705 329-459 (459)
90 KOG0269 WD40 repeat-containing 99.7 3.8E-17 8.2E-22 194.5 14.1 203 525-781 100-304 (839)
91 KOG0269 WD40 repeat-containing 99.7 3.2E-17 6.9E-22 195.1 12.8 212 478-727 103-317 (839)
92 KOG0308 Conserved WD40 repeat- 99.7 9.1E-17 2E-21 188.0 16.3 233 480-768 42-287 (735)
93 KOG2106 Uncharacterized conser 99.7 3.3E-13 7.2E-18 154.3 43.1 384 185-763 129-518 (626)
94 KOG2048 WD40 repeat protein [G 99.7 9.3E-13 2E-17 155.9 47.5 509 17-709 26-550 (691)
95 KOG0643 Translation initiation 99.7 2.4E-15 5.1E-20 160.3 22.3 203 505-767 6-221 (327)
96 KOG0300 WD40 repeat-containing 99.7 7.6E-16 1.6E-20 166.3 18.7 229 452-719 144-399 (481)
97 KOG0278 Serine/threonine kinas 99.7 7.1E-16 1.5E-20 162.5 17.9 222 478-765 74-296 (334)
98 KOG0640 mRNA cleavage stimulat 99.7 2.7E-16 5.9E-21 169.7 14.9 223 500-766 103-335 (430)
99 KOG0270 WD40 repeat-containing 99.7 3.5E-16 7.5E-21 176.9 15.6 204 527-766 194-404 (463)
100 KOG0283 WD40 repeat-containing 99.7 3.3E-15 7.2E-20 181.2 24.4 204 500-766 360-576 (712)
101 KOG0278 Serine/threonine kinas 99.7 1.8E-15 3.9E-20 159.5 18.5 164 503-711 137-301 (334)
102 KOG0289 mRNA splicing factor [ 99.7 9.9E-16 2.2E-20 172.2 16.9 200 511-769 221-422 (506)
103 KOG0267 Microtubule severing p 99.7 1.6E-16 3.5E-21 187.8 9.7 185 503-729 64-248 (825)
104 KOG1332 Vesicle coat complex C 99.7 1.2E-15 2.6E-20 160.8 14.7 199 523-766 21-241 (299)
105 KOG0305 Anaphase promoting com 99.7 2.6E-15 5.6E-20 178.3 19.1 200 485-731 197-399 (484)
106 KOG0646 WD40 repeat protein [G 99.6 5.7E-15 1.2E-19 168.1 20.2 222 483-766 59-307 (476)
107 KOG0310 Conserved WD40 repeat- 99.6 1.9E-14 4.1E-19 164.8 24.1 184 503-729 104-289 (487)
108 KOG0289 mRNA splicing factor [ 99.6 3E-15 6.5E-20 168.4 17.1 178 500-719 252-431 (506)
109 KOG1446 Histone H3 (Lys4) meth 99.6 6.1E-14 1.3E-18 153.7 24.6 218 505-766 10-262 (311)
110 KOG0772 Uncharacterized conser 99.6 6.7E-14 1.5E-18 160.2 25.4 199 510-761 318-531 (641)
111 KOG0647 mRNA export protein (c 99.6 8.5E-14 1.8E-18 151.0 24.9 283 12-415 23-311 (347)
112 KOG0302 Ribosome Assembly prot 99.6 3.7E-15 8E-20 165.3 14.4 169 500-708 202-379 (440)
113 KOG0294 WD40 repeat-containing 99.6 2.8E-14 6.2E-19 155.4 20.3 193 478-709 56-283 (362)
114 KOG0646 WD40 repeat protein [G 99.6 1.2E-14 2.6E-19 165.5 17.6 209 483-727 101-327 (476)
115 KOG0772 Uncharacterized conser 99.6 1.6E-13 3.5E-18 157.1 26.4 190 506-732 265-470 (641)
116 KOG1332 Vesicle coat complex C 99.6 3.8E-14 8.3E-19 149.5 19.0 179 504-711 97-291 (299)
117 KOG1036 Mitotic spindle checkp 99.6 3.2E-13 6.9E-18 147.4 26.5 78 12-123 9-86 (323)
118 KOG0268 Sof1-like rRNA process 99.6 8E-15 1.7E-19 161.9 14.2 240 477-766 81-345 (433)
119 KOG0641 WD40 repeat protein [G 99.6 1.9E-13 4.1E-18 142.0 23.4 211 505-766 85-303 (350)
120 KOG4283 Transcription-coupled 99.6 4.9E-14 1.1E-18 151.7 19.5 236 506-769 40-279 (397)
121 KOG0302 Ribosome Assembly prot 99.6 2.6E-14 5.6E-19 158.6 17.5 200 528-766 168-378 (440)
122 KOG0299 U3 snoRNP-associated p 99.6 2.3E-14 5E-19 162.9 17.3 167 506-716 199-365 (479)
123 KOG1407 WD40 repeat protein [F 99.6 4E-14 8.6E-19 150.7 17.5 185 504-728 15-240 (313)
124 KOG0268 Sof1-like rRNA process 99.6 9.4E-15 2E-19 161.3 12.7 201 504-767 61-303 (433)
125 KOG1446 Histone H3 (Lys4) meth 99.6 1.1E-12 2.3E-17 144.1 28.1 259 397-729 14-285 (311)
126 KOG2048 WD40 repeat protein [G 99.6 3.7E-11 8E-16 142.6 42.8 443 100-729 35-527 (691)
127 KOG0973 Histone transcription 99.6 3.3E-14 7.1E-19 176.4 17.7 186 509-724 13-218 (942)
128 KOG1273 WD40 repeat protein [G 99.6 2.2E-13 4.7E-18 148.2 21.7 227 19-297 26-268 (405)
129 KOG0303 Actin-binding protein 99.5 3.4E-14 7.4E-19 158.4 14.0 134 565-720 76-216 (472)
130 KOG2096 WD40 repeat protein [G 99.5 1.4E-12 3E-17 142.0 24.7 185 480-705 204-400 (420)
131 KOG1445 Tumor-specific antigen 99.5 4.5E-12 9.9E-17 147.5 29.8 120 570-710 627-753 (1012)
132 KOG0299 U3 snoRNP-associated p 99.5 1.2E-13 2.7E-18 157.0 16.6 214 503-765 136-355 (479)
133 KOG0640 mRNA cleavage stimulat 99.5 7.8E-14 1.7E-18 150.9 14.2 177 500-718 163-346 (430)
134 KOG0647 mRNA export protein (c 99.5 5.5E-13 1.2E-17 144.8 19.9 212 507-771 25-285 (347)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 4E-11 8.6E-16 138.1 37.1 89 574-679 210-300 (300)
136 KOG0650 WD40 repeat nucleolar 99.5 1.6E-12 3.5E-17 151.3 23.6 99 527-654 621-732 (733)
137 KOG0321 WD40 repeat-containing 99.5 7.7E-13 1.7E-17 155.3 20.5 247 478-769 115-394 (720)
138 KOG1274 WD40 repeat protein [G 99.5 2.5E-12 5.4E-17 156.7 24.7 237 400-708 16-263 (933)
139 KOG1273 WD40 repeat protein [G 99.5 1.5E-12 3.3E-17 141.6 20.4 177 512-724 26-297 (405)
140 KOG4378 Nuclear protein COP1 [ 99.5 2E-12 4.4E-17 147.3 22.3 207 478-729 94-303 (673)
141 KOG2096 WD40 repeat protein [G 99.5 2.3E-13 4.9E-18 148.1 14.0 168 563-766 79-308 (420)
142 KOG1963 WD40 repeat protein [G 99.5 4E-11 8.6E-16 146.5 34.7 521 21-663 21-589 (792)
143 KOG0303 Actin-binding protein 99.5 1.2E-12 2.6E-17 146.3 19.5 173 505-708 77-250 (472)
144 KOG4283 Transcription-coupled 99.5 4.5E-12 9.7E-17 136.8 22.5 198 481-727 120-343 (397)
145 KOG2445 Nuclear pore complex c 99.5 5.2E-12 1.1E-16 137.6 22.5 208 506-765 10-317 (361)
146 KOG0270 WD40 repeat-containing 99.5 8.8E-13 1.9E-17 149.7 17.1 165 506-708 240-405 (463)
147 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.6E-10 3.4E-15 133.1 34.6 137 558-718 145-290 (300)
148 KOG0639 Transducin-like enhanc 99.4 1.5E-12 3.3E-17 148.4 15.4 215 477-739 479-693 (705)
149 KOG1274 WD40 repeat protein [G 99.4 1.1E-11 2.5E-16 151.1 22.6 227 480-770 30-266 (933)
150 KOG0639 Transducin-like enhanc 99.4 9.9E-13 2.1E-17 149.9 12.3 226 480-764 435-661 (705)
151 KOG0649 WD40 repeat protein [G 99.4 2.4E-11 5.2E-16 128.3 20.8 190 501-725 54-255 (325)
152 KOG1034 Transcriptional repres 99.4 3.3E-12 7.1E-17 140.1 14.4 101 528-657 108-211 (385)
153 KOG0642 Cell-cycle nuclear pro 99.4 4.1E-12 8.9E-17 148.0 15.4 209 504-765 289-560 (577)
154 KOG0642 Cell-cycle nuclear pro 99.4 5.3E-12 1.2E-16 147.1 15.8 209 478-719 309-573 (577)
155 KOG0307 Vesicle coat complex C 99.4 1.8E-12 3.8E-17 161.8 12.0 196 500-732 107-309 (1049)
156 KOG0322 G-protein beta subunit 99.4 1.5E-11 3.3E-16 131.4 16.8 121 506-656 202-322 (323)
157 KOG1036 Mitotic spindle checkp 99.4 3.3E-10 7.1E-15 124.2 27.3 266 278-688 13-293 (323)
158 KOG0650 WD40 repeat nucleolar 99.3 5.5E-11 1.2E-15 138.9 21.8 143 523-704 574-732 (733)
159 KOG0321 WD40 repeat-containing 99.3 1.8E-11 3.9E-16 144.0 17.5 212 504-771 95-352 (720)
160 KOG2445 Nuclear pore complex c 99.3 1.2E-10 2.6E-15 127.1 21.6 260 395-707 11-318 (361)
161 KOG0307 Vesicle coat complex C 99.3 3E-12 6.4E-17 159.8 10.1 199 528-769 83-287 (1049)
162 KOG4378 Nuclear protein COP1 [ 99.3 2E-11 4.4E-16 139.3 15.6 238 478-775 50-289 (673)
163 KOG4328 WD40 protein [Function 99.3 7.2E-11 1.6E-15 134.6 17.9 218 486-729 211-473 (498)
164 KOG4328 WD40 protein [Function 99.3 6.1E-11 1.3E-15 135.2 15.4 209 503-766 180-399 (498)
165 KOG2919 Guanine nucleotide-bin 99.3 1.9E-10 4.1E-15 126.1 18.1 215 477-729 125-350 (406)
166 KOG2055 WD40 repeat protein [G 99.2 7.7E-10 1.7E-14 126.4 23.4 156 511-707 346-512 (514)
167 KOG0649 WD40 repeat protein [G 99.2 1.6E-10 3.4E-15 122.2 16.6 167 518-719 19-198 (325)
168 KOG0644 Uncharacterized conser 99.2 5.5E-12 1.2E-16 151.3 4.9 212 501-766 182-426 (1113)
169 KOG1034 Transcriptional repres 99.2 3.2E-10 6.8E-15 124.8 17.7 123 569-709 88-213 (385)
170 KOG1009 Chromatin assembly com 99.2 1.1E-10 2.4E-15 131.6 14.4 167 510-708 14-196 (434)
171 COG2319 FOG: WD40 repeat [Gene 99.2 5.8E-09 1.3E-13 123.1 28.0 198 484-727 133-336 (466)
172 KOG1007 WD repeat protein TSSC 99.2 8.3E-10 1.8E-14 119.5 18.0 144 529-707 187-361 (370)
173 COG2319 FOG: WD40 repeat [Gene 99.2 7.9E-09 1.7E-13 122.0 27.1 160 531-729 130-294 (466)
174 KOG2919 Guanine nucleotide-bin 99.1 4.5E-09 9.8E-14 115.5 22.1 132 527-686 222-357 (406)
175 KOG0290 Conserved WD40 repeat- 99.1 8.7E-10 1.9E-14 119.5 16.1 220 507-770 94-322 (364)
176 KOG1009 Chromatin assembly com 99.1 5.7E-10 1.2E-14 125.9 15.1 263 477-765 28-328 (434)
177 KOG1538 Uncharacterized conser 99.1 2.6E-08 5.5E-13 117.5 29.1 276 12-376 8-293 (1081)
178 KOG0771 Prolactin regulatory e 99.1 8.4E-10 1.8E-14 125.6 14.1 200 20-301 148-347 (398)
179 KOG4227 WD40 repeat protein [G 99.1 9.9E-09 2.1E-13 114.5 20.8 308 14-437 54-386 (609)
180 KOG2055 WD40 repeat protein [G 99.1 1E-08 2.2E-13 117.5 20.9 286 11-376 208-512 (514)
181 KOG1007 WD repeat protein TSSC 99.0 2.9E-09 6.2E-14 115.4 15.2 170 559-766 111-289 (370)
182 KOG1188 WD40 repeat protein [G 99.0 2.7E-09 5.8E-14 118.4 14.1 146 528-709 43-198 (376)
183 KOG0290 Conserved WD40 repeat- 99.0 3.6E-09 7.9E-14 114.8 14.7 165 506-708 147-319 (364)
184 KOG1188 WD40 repeat protein [G 99.0 1.5E-08 3.2E-13 112.6 18.5 198 29-309 41-244 (376)
185 KOG1310 WD40 repeat protein [G 99.0 9.3E-10 2E-14 127.3 9.0 127 562-709 42-180 (758)
186 KOG1517 Guanine nucleotide bin 99.0 3.6E-08 7.9E-13 121.9 22.8 192 477-710 1179-1384(1387)
187 KOG2394 WD40 protein DMR-N9 [G 99.0 6.5E-09 1.4E-13 120.8 15.4 168 528-728 188-383 (636)
188 KOG1334 WD40 repeat protein [G 99.0 8.6E-09 1.9E-13 118.7 16.2 130 511-660 338-469 (559)
189 KOG0644 Uncharacterized conser 98.9 3.3E-10 7.2E-15 136.4 3.3 121 560-707 180-300 (1113)
190 PF08662 eIF2A: Eukaryotic tra 98.9 3.8E-08 8.3E-13 107.1 18.9 124 569-715 58-186 (194)
191 KOG1587 Cytoplasmic dynein int 98.9 5.2E-08 1.1E-12 119.8 22.0 262 396-708 241-517 (555)
192 KOG1538 Uncharacterized conser 98.9 8E-08 1.7E-12 113.4 21.4 158 511-708 134-294 (1081)
193 KOG2394 WD40 protein DMR-N9 [G 98.9 1.8E-08 3.9E-13 117.2 15.7 150 510-679 220-384 (636)
194 KOG1517 Guanine nucleotide bin 98.9 8.6E-08 1.9E-12 118.7 22.3 103 528-660 1272-1384(1387)
195 KOG0322 G-protein beta subunit 98.9 5.5E-09 1.2E-13 112.2 9.7 151 528-706 168-322 (323)
196 KOG1310 WD40 repeat protein [G 98.8 5.6E-09 1.2E-13 121.0 8.2 168 501-707 42-231 (758)
197 KOG1963 WD40 repeat protein [G 98.8 9.1E-07 2E-11 109.2 26.8 311 10-436 199-536 (792)
198 KOG4547 WD40 repeat-containing 98.8 1.3E-07 2.8E-12 112.2 17.9 143 527-708 72-221 (541)
199 KOG0771 Prolactin regulatory e 98.8 6E-08 1.3E-12 110.8 13.8 168 528-730 159-335 (398)
200 KOG0974 WD-repeat protein WDR6 98.8 8.1E-08 1.8E-12 119.9 15.6 141 527-708 147-289 (967)
201 PRK01742 tolB translocation pr 98.7 8.5E-07 1.8E-11 108.9 23.7 158 528-728 262-424 (429)
202 KOG1524 WD40 repeat-containing 98.7 4.6E-07 1E-11 105.3 19.7 131 508-689 144-276 (737)
203 KOG1240 Protein kinase contain 98.7 8.5E-07 1.8E-11 112.0 21.5 236 497-766 1036-1334(1431)
204 KOG2110 Uncharacterized conser 98.7 3.8E-05 8.2E-10 86.9 32.0 96 533-658 151-249 (391)
205 KOG0974 WD-repeat protein WDR6 98.7 2.9E-07 6.3E-12 115.1 16.0 143 592-767 146-289 (967)
206 KOG1587 Cytoplasmic dynein int 98.7 6.1E-07 1.3E-11 110.5 18.5 206 478-709 258-474 (555)
207 KOG4547 WD40 repeat-containing 98.6 1.2E-06 2.6E-11 104.1 19.8 122 591-728 70-193 (541)
208 KOG1524 WD40 repeat-containing 98.6 1.1E-07 2.3E-12 110.5 10.5 161 528-730 78-238 (737)
209 KOG1272 WD40-repeat-containing 98.6 3.5E-08 7.7E-13 113.1 6.1 175 511-730 211-390 (545)
210 KOG2111 Uncharacterized conser 98.6 3.8E-05 8.2E-10 85.4 29.3 101 531-659 155-258 (346)
211 KOG2110 Uncharacterized conser 98.6 1.6E-06 3.5E-11 97.7 18.6 144 528-710 100-251 (391)
212 PRK11028 6-phosphogluconolacto 98.6 2E-05 4.4E-10 93.2 29.4 193 483-711 100-310 (330)
213 PF02239 Cytochrom_D1: Cytochr 98.6 0.00033 7.1E-09 84.0 39.0 95 556-666 255-356 (369)
214 KOG2139 WD40 repeat protein [G 98.6 1.6E-06 3.6E-11 97.1 17.4 181 477-688 112-299 (445)
215 KOG4227 WD40 repeat protein [G 98.6 6.4E-07 1.4E-11 100.4 14.1 171 504-709 51-227 (609)
216 PF08662 eIF2A: Eukaryotic tra 98.6 3E-06 6.6E-11 92.3 19.1 137 603-766 39-179 (194)
217 KOG1912 WD40 repeat protein [G 98.6 2.9E-05 6.3E-10 94.2 28.3 108 592-714 438-558 (1062)
218 KOG1523 Actin-related protein 98.6 1.1E-06 2.3E-11 97.4 14.8 159 509-706 10-175 (361)
219 KOG1240 Protein kinase contain 98.5 2.5E-06 5.4E-11 107.9 19.6 150 559-730 1037-1249(1431)
220 KOG2321 WD40 repeat protein [G 98.5 2.9E-06 6.4E-11 99.8 18.6 153 528-720 148-315 (703)
221 KOG2111 Uncharacterized conser 98.5 5.8E-06 1.3E-10 91.7 17.8 177 484-709 74-258 (346)
222 PRK01742 tolB translocation pr 98.4 6.6E-06 1.4E-10 101.0 19.2 175 485-714 184-368 (429)
223 KOG1272 WD40-repeat-containing 98.4 2.6E-07 5.7E-12 106.1 6.2 133 560-716 200-332 (545)
224 KOG0280 Uncharacterized conser 98.4 3.7E-06 8E-11 92.3 13.1 128 528-682 136-266 (339)
225 KOG1523 Actin-related protein 98.3 4.7E-06 1E-10 92.4 13.0 189 481-709 28-238 (361)
226 PRK11028 6-phosphogluconolacto 98.3 5E-05 1.1E-09 89.9 22.0 157 514-709 84-260 (330)
227 KOG3881 Uncharacterized conser 98.3 2.3E-05 5E-10 89.2 17.6 121 572-713 204-326 (412)
228 KOG3881 Uncharacterized conser 98.3 3.5E-05 7.6E-10 87.7 18.6 191 527-766 117-320 (412)
229 KOG1409 Uncharacterized conser 98.3 6.7E-05 1.4E-09 84.2 19.8 103 528-658 168-271 (404)
230 PRK03629 tolB translocation pr 98.2 0.00028 6.1E-09 86.7 27.6 143 557-724 274-422 (429)
231 KOG2139 WD40 repeat protein [G 98.2 3.7E-05 8.1E-10 86.5 15.4 162 527-729 112-290 (445)
232 KOG1409 Uncharacterized conser 98.1 3.8E-05 8.3E-10 86.0 15.0 190 481-710 42-273 (404)
233 KOG3914 WD repeat protein WDR4 98.1 2E-05 4.4E-10 90.1 12.9 109 592-716 123-232 (390)
234 PRK05137 tolB translocation pr 98.1 0.00016 3.4E-09 89.2 21.9 166 504-710 196-369 (435)
235 KOG4190 Uncharacterized conser 98.1 1E-05 2.3E-10 94.0 9.9 201 484-719 701-918 (1034)
236 PF00400 WD40: WD domain, G-be 98.1 1E-05 2.2E-10 63.5 7.0 39 560-607 1-39 (39)
237 PRK02889 tolB translocation pr 98.1 0.00054 1.2E-08 84.2 25.5 157 528-722 254-417 (427)
238 PRK04922 tolB translocation pr 98.1 0.00014 3E-09 89.6 20.3 166 506-712 200-373 (433)
239 PRK05137 tolB translocation pr 98.0 0.0003 6.5E-09 86.7 22.2 131 562-714 193-329 (435)
240 KOG2321 WD40 repeat protein [G 98.0 0.0002 4.4E-09 84.9 18.2 152 508-687 174-331 (703)
241 PF00400 WD40: WD domain, G-be 98.0 1.5E-05 3.2E-10 62.7 6.1 39 611-655 1-39 (39)
242 KOG2695 WD40 repeat protein [G 98.0 1.1E-05 2.4E-10 90.2 6.9 125 569-717 251-386 (425)
243 PRK03629 tolB translocation pr 98.0 0.00044 9.5E-09 85.0 21.8 120 571-712 243-368 (429)
244 PRK02889 tolB translocation pr 98.0 0.00021 4.5E-09 87.8 18.9 134 557-713 227-366 (427)
245 PRK04922 tolB translocation pr 98.0 0.00022 4.8E-09 87.8 19.1 130 562-713 195-330 (433)
246 KOG1334 WD40 repeat protein [G 98.0 2.9E-05 6.3E-10 90.3 10.0 151 478-658 157-313 (559)
247 KOG4497 Uncharacterized conser 97.9 0.0012 2.7E-08 73.6 21.2 103 571-690 319-423 (447)
248 KOG2315 Predicted translation 97.9 0.0046 9.9E-08 74.0 26.5 125 569-714 269-396 (566)
249 PF02239 Cytochrom_D1: Cytochr 97.9 0.00019 4.2E-09 86.0 15.8 112 593-718 8-119 (369)
250 COG5354 Uncharacterized protei 97.9 0.011 2.5E-07 69.9 29.3 119 568-707 272-395 (561)
251 KOG3914 WD repeat protein WDR4 97.9 7E-05 1.5E-09 85.9 10.8 87 564-666 145-232 (390)
252 KOG2315 Predicted translation 97.9 0.014 3E-07 70.0 29.8 129 509-680 270-411 (566)
253 KOG1064 RAVE (regulator of V-A 97.8 7.9E-05 1.7E-09 97.6 11.1 147 528-717 2223-2376(2439)
254 TIGR02800 propeller_TolB tol-p 97.8 0.0011 2.5E-08 80.9 21.1 132 557-711 221-358 (417)
255 KOG2695 WD40 repeat protein [G 97.8 6.1E-05 1.3E-09 84.4 8.0 118 528-668 267-387 (425)
256 TIGR02800 propeller_TolB tol-p 97.7 0.0031 6.7E-08 77.1 23.2 129 563-713 182-316 (417)
257 KOG1354 Serine/threonine prote 97.7 0.0031 6.7E-08 71.1 20.1 158 479-659 179-361 (433)
258 KOG0280 Uncharacterized conser 97.7 0.00017 3.8E-09 79.5 9.4 169 504-710 160-336 (339)
259 KOG1064 RAVE (regulator of V-A 97.6 7.5E-05 1.6E-09 97.9 7.4 178 480-717 2225-2408(2439)
260 PRK01029 tolB translocation pr 97.6 0.0033 7.2E-08 77.2 21.1 133 562-715 272-411 (428)
261 KOG1354 Serine/threonine prote 97.6 0.00075 1.6E-08 75.9 13.6 171 506-711 161-363 (433)
262 KOG0309 Conserved WD40 repeat- 97.6 0.00017 3.7E-09 87.2 9.2 229 501-768 106-341 (1081)
263 PF10282 Lactonase: Lactonase, 97.6 0.09 1.9E-06 62.8 32.3 125 570-715 191-332 (345)
264 PRK00178 tolB translocation pr 97.5 0.0055 1.2E-07 75.4 21.5 121 569-711 241-367 (430)
265 PRK00178 tolB translocation pr 97.5 0.0027 5.9E-08 78.1 17.5 129 563-713 191-325 (430)
266 KOG2041 WD40 repeat protein [G 97.4 0.0005 1.1E-08 82.9 9.7 168 511-707 16-186 (1189)
267 KOG0309 Conserved WD40 repeat- 97.4 0.00096 2.1E-08 81.1 11.8 160 572-767 69-233 (1081)
268 COG4946 Uncharacterized protei 97.4 0.0056 1.2E-07 71.5 16.9 128 567-714 356-484 (668)
269 KOG2041 WD40 repeat protein [G 97.4 0.095 2.1E-06 64.2 27.5 104 564-685 498-605 (1189)
270 PRK01029 tolB translocation pr 97.4 0.0093 2E-07 73.3 20.3 126 569-714 229-366 (428)
271 PRK04792 tolB translocation pr 97.4 0.011 2.4E-07 73.2 21.0 118 572-712 263-387 (448)
272 KOG1912 WD40 repeat protein [G 97.3 0.0025 5.4E-08 78.2 13.8 138 523-679 23-165 (1062)
273 PRK04792 tolB translocation pr 97.3 0.0051 1.1E-07 76.0 16.8 128 564-713 211-344 (448)
274 KOG4190 Uncharacterized conser 97.2 0.00061 1.3E-08 79.8 7.7 171 11-250 730-907 (1034)
275 PLN02919 haloacid dehalogenase 97.2 0.05 1.1E-06 73.9 25.7 117 574-713 686-839 (1057)
276 KOG1275 PAB-dependent poly(A) 97.1 0.0025 5.4E-08 79.6 11.3 138 528-705 190-340 (1118)
277 KOG1832 HIV-1 Vpr-binding prot 97.0 0.00025 5.5E-09 87.1 1.8 165 504-718 1096-1266(1516)
278 KOG1275 PAB-dependent poly(A) 97.0 0.002 4.3E-08 80.4 9.0 142 27-247 186-340 (1118)
279 PF10282 Lactonase: Lactonase, 97.0 0.62 1.3E-05 55.7 30.1 209 19-305 39-274 (345)
280 KOG0882 Cyclophilin-related pe 96.9 0.0015 3.2E-08 75.9 6.9 169 508-716 8-240 (558)
281 TIGR02658 TTQ_MADH_Hv methylam 96.9 0.095 2.1E-06 62.1 22.0 74 24-131 53-147 (352)
282 PLN02919 haloacid dehalogenase 96.9 0.042 9.1E-07 74.6 21.7 118 572-711 741-892 (1057)
283 KOG2066 Vacuolar assembly/sort 96.9 0.0099 2.1E-07 73.9 13.6 149 527-722 51-202 (846)
284 KOG2114 Vacuolar assembly/sort 96.9 0.09 2E-06 66.2 21.5 129 511-671 127-258 (933)
285 KOG4714 Nucleoporin [Nuclear s 96.8 0.0029 6.3E-08 69.0 7.1 74 572-658 181-255 (319)
286 TIGR03300 assembly_YfgL outer 96.7 0.51 1.1E-05 57.0 27.3 109 592-720 242-351 (377)
287 KOG4714 Nucleoporin [Nuclear s 96.7 0.0027 5.9E-08 69.2 6.4 94 602-708 160-255 (319)
288 COG5170 CDC55 Serine/threonine 96.7 0.012 2.5E-07 65.6 11.3 224 510-774 27-317 (460)
289 PF11768 DUF3312: Protein of u 96.7 0.0068 1.5E-07 73.5 9.9 76 14-123 257-332 (545)
290 PF11768 DUF3312: Protein of u 96.7 0.012 2.5E-07 71.6 11.8 81 619-715 257-337 (545)
291 KOG2066 Vacuolar assembly/sort 96.7 0.046 1E-06 68.2 17.0 155 528-722 86-250 (846)
292 KOG4497 Uncharacterized conser 96.6 0.038 8.3E-07 62.2 14.5 143 528-709 64-242 (447)
293 TIGR03300 assembly_YfgL outer 96.6 1.8 3.9E-05 52.2 30.4 95 592-704 280-376 (377)
294 KOG4532 WD40-like repeat conta 96.5 0.078 1.7E-06 58.5 15.8 118 573-714 161-289 (344)
295 smart00320 WD40 WD40 repeats. 96.3 0.011 2.3E-07 43.9 5.8 38 561-607 3-40 (40)
296 KOG0882 Cyclophilin-related pe 96.2 0.049 1.1E-06 63.7 13.1 227 16-315 9-239 (558)
297 KOG1832 HIV-1 Vpr-binding prot 96.2 0.0045 9.8E-08 76.6 4.7 126 562-714 1093-1221(1516)
298 COG4946 Uncharacterized protei 96.2 0.2 4.3E-06 59.1 17.5 130 527-688 373-507 (668)
299 TIGR02658 TTQ_MADH_Hv methylam 96.2 0.18 3.9E-06 59.8 17.9 103 601-717 27-146 (352)
300 smart00320 WD40 WD40 repeats. 96.1 0.014 3E-07 43.3 5.7 39 611-655 2-40 (40)
301 KOG4532 WD40-like repeat conta 96.1 0.25 5.5E-06 54.6 16.8 144 512-685 161-318 (344)
302 PF04762 IKI3: IKI3 family; I 96.1 0.29 6.4E-06 65.5 21.1 182 509-728 75-313 (928)
303 KOG1645 RING-finger-containing 95.7 0.021 4.6E-07 65.9 7.2 94 603-709 175-268 (463)
304 KOG2114 Vacuolar assembly/sort 95.7 1 2.2E-05 57.2 22.0 129 570-722 125-259 (933)
305 PF13360 PQQ_2: PQQ-like domai 95.7 0.29 6.2E-06 54.6 16.4 112 592-719 37-152 (238)
306 PF08450 SGL: SMP-30/Gluconola 95.7 1.5 3.2E-05 49.6 22.3 133 569-727 84-232 (246)
307 PF14783 BBS2_Mid: Ciliary BBS 95.7 0.55 1.2E-05 45.9 15.6 99 573-689 2-104 (111)
308 COG5170 CDC55 Serine/threonine 95.6 0.022 4.8E-07 63.5 6.6 129 567-719 169-322 (460)
309 PRK04043 tolB translocation pr 95.5 0.79 1.7E-05 56.3 20.0 133 557-711 220-361 (419)
310 PRK04043 tolB translocation pr 95.4 0.52 1.1E-05 57.8 18.4 122 572-715 189-317 (419)
311 KOG2314 Translation initiation 95.3 0.1 2.2E-06 62.6 11.0 111 574-711 214-338 (698)
312 PF13360 PQQ_2: PQQ-like domai 95.3 1.9 4.1E-05 48.0 21.2 102 592-713 123-236 (238)
313 KOG2314 Translation initiation 95.3 10 0.00023 46.3 28.0 104 570-689 445-557 (698)
314 PF15492 Nbas_N: Neuroblastoma 95.2 3.9 8.6E-05 46.2 22.1 45 569-622 228-272 (282)
315 KOG1008 Uncharacterized conser 95.0 0.0099 2.1E-07 72.0 1.5 187 528-768 73-277 (783)
316 PF04762 IKI3: IKI3 family; I 94.8 23 0.00049 48.0 51.4 95 6-130 62-159 (928)
317 PF15492 Nbas_N: Neuroblastoma 94.8 2.9 6.3E-05 47.2 19.7 87 12-120 39-127 (282)
318 COG2706 3-carboxymuconate cycl 94.4 13 0.00029 43.3 30.6 123 571-715 191-331 (346)
319 KOG4640 Anaphase-promoting com 94.3 0.17 3.6E-06 62.0 9.5 78 622-714 21-99 (665)
320 KOG1645 RING-finger-containing 94.0 0.1 2.3E-06 60.5 6.6 85 562-660 185-269 (463)
321 PF07433 DUF1513: Protein of u 93.9 5.3 0.00012 46.3 20.0 79 564-663 50-152 (305)
322 KOG4640 Anaphase-promoting com 93.3 0.34 7.4E-06 59.4 9.7 92 571-678 21-114 (665)
323 COG2706 3-carboxymuconate cycl 92.9 23 0.0005 41.4 27.7 114 279-416 191-309 (346)
324 PF12894 Apc4_WD40: Anaphase-p 91.8 0.41 9E-06 39.5 5.5 38 9-46 4-41 (47)
325 KOG2079 Vacuolar assembly/sort 91.8 0.35 7.5E-06 62.6 7.4 74 16-120 130-203 (1206)
326 KOG2444 WD40 repeat protein [G 91.7 0.37 7.9E-06 52.6 6.4 103 527-657 72-177 (238)
327 PF08553 VID27: VID27 cytoplas 91.7 2.3 5E-05 55.4 14.6 131 556-706 510-646 (794)
328 KOG1920 IkappaB kinase complex 91.5 9.9 0.00021 50.6 19.8 156 510-706 69-273 (1265)
329 PF08596 Lgl_C: Lethal giant l 90.8 10 0.00023 46.1 18.5 230 16-301 86-329 (395)
330 COG5354 Uncharacterized protei 90.7 0.88 1.9E-05 54.6 8.8 118 565-710 27-162 (561)
331 PF08450 SGL: SMP-30/Gluconola 90.7 11 0.00025 42.3 17.9 103 569-686 132-242 (246)
332 KOG3621 WD40 repeat-containing 90.5 1.1 2.4E-05 55.8 9.7 103 592-708 46-155 (726)
333 PF14783 BBS2_Mid: Ciliary BBS 90.1 17 0.00036 35.9 15.5 93 526-652 16-109 (111)
334 PRK11138 outer membrane biogen 89.9 51 0.0011 40.1 23.8 25 102-126 205-229 (394)
335 PF08553 VID27: VID27 cytoplas 89.8 5.3 0.00011 52.2 15.4 100 525-656 542-646 (794)
336 KOG3617 WD40 and TPR repeat-co 89.6 0.61 1.3E-05 58.5 6.5 93 599-707 39-131 (1416)
337 PRK11138 outer membrane biogen 89.3 12 0.00025 45.6 17.6 105 592-716 257-362 (394)
338 PF08596 Lgl_C: Lethal giant l 88.5 20 0.00044 43.6 18.5 190 506-717 83-300 (395)
339 KOG4649 PQQ (pyrrolo-quinoline 87.1 51 0.0011 37.1 18.3 106 528-666 26-132 (354)
340 PF07433 DUF1513: Protein of u 86.7 9.2 0.0002 44.4 13.3 91 592-688 18-117 (305)
341 KOG2079 Vacuolar assembly/sort 86.7 1.6 3.4E-05 56.9 7.7 88 592-685 100-191 (1206)
342 PF12348 CLASP_N: CLASP N term 86.7 9.3 0.0002 42.5 13.4 172 1118-1315 23-210 (228)
343 KOG4649 PQQ (pyrrolo-quinoline 86.6 8.2 0.00018 43.1 12.0 109 591-716 23-132 (354)
344 KOG2444 WD40 repeat protein [G 86.5 1.6 3.6E-05 47.8 6.7 73 592-669 71-144 (238)
345 PRK02888 nitrous-oxide reducta 86.2 19 0.00041 45.7 16.5 93 600-708 295-405 (635)
346 KOG1920 IkappaB kinase complex 84.9 13 0.00029 49.5 14.7 115 574-709 199-324 (1265)
347 KOG3621 WD40 repeat-containing 83.4 4.6 9.9E-05 50.7 9.3 115 510-658 34-155 (726)
348 KOG1916 Nuclear protein, conta 82.6 0.69 1.5E-05 58.7 2.0 143 566-730 128-293 (1283)
349 PF11715 Nup160: Nucleoporin N 82.0 8.7 0.00019 49.0 11.8 31 101-131 229-259 (547)
350 KOG2395 Protein involved in va 81.7 8.3 0.00018 47.0 10.3 128 556-706 362-499 (644)
351 PF02897 Peptidase_S9_N: Proly 81.0 65 0.0014 39.3 18.6 109 585-709 133-262 (414)
352 PF12234 Rav1p_C: RAVE protein 80.7 45 0.00098 42.8 16.9 102 592-707 42-156 (631)
353 PRK02888 nitrous-oxide reducta 80.0 16 0.00035 46.4 12.5 62 639-710 288-354 (635)
354 PF06433 Me-amine-dh_H: Methyl 79.0 1.5E+02 0.0032 35.3 28.5 109 99-250 44-166 (342)
355 KOG2956 CLIP-associating prote 78.7 15 0.00033 44.4 11.1 70 1227-1298 398-468 (516)
356 PF12894 Apc4_WD40: Anaphase-p 78.5 3 6.4E-05 34.5 3.8 29 1315-1349 16-44 (47)
357 PF04053 Coatomer_WDAD: Coatom 78.3 42 0.00092 41.5 15.4 95 592-708 80-174 (443)
358 KOG1916 Nuclear protein, conta 77.0 1.4 3E-05 56.1 2.2 152 533-712 151-328 (1283)
359 PF03178 CPSF_A: CPSF A subuni 76.8 40 0.00087 39.7 14.4 112 568-707 86-202 (321)
360 PF00930 DPPIV_N: Dipeptidyl p 76.1 6.1 0.00013 47.4 7.3 83 600-690 22-121 (353)
361 PF12717 Cnd1: non-SMC mitotic 75.9 17 0.00037 39.0 10.0 101 1119-1247 5-110 (178)
362 KOG2171 Karyopherin (importin) 74.9 39 0.00085 45.2 14.2 155 1119-1288 135-303 (1075)
363 cd00216 PQQ_DH Dehydrogenases 73.2 96 0.0021 39.0 17.2 119 592-716 111-273 (488)
364 PF00780 CNH: CNH domain; Int 72.4 1.8E+02 0.0039 33.1 18.1 144 528-715 10-173 (275)
365 COG3391 Uncharacterized conser 72.4 76 0.0016 38.5 15.5 107 592-713 87-196 (381)
366 PF14655 RAB3GAP2_N: Rab3 GTPa 72.4 21 0.00046 43.6 10.5 106 8-130 299-408 (415)
367 cd00216 PQQ_DH Dehydrogenases 72.2 1.5E+02 0.0032 37.3 18.6 103 599-715 173-327 (488)
368 PF05096 Glu_cyclase_2: Glutam 71.7 1.1E+02 0.0024 35.1 15.2 119 571-716 45-166 (264)
369 COG0823 TolB Periplasmic compo 71.6 26 0.00057 43.1 11.3 116 585-716 247-367 (425)
370 COG3391 Uncharacterized conser 70.5 1.3E+02 0.0027 36.6 16.8 122 572-714 117-246 (381)
371 KOG3617 WD40 and TPR repeat-co 70.2 3.9 8.4E-05 51.9 3.6 71 572-657 61-131 (1416)
372 KOG1008 Uncharacterized conser 66.8 2.7 5.9E-05 52.0 1.4 105 590-708 165-276 (783)
373 PF04053 Coatomer_WDAD: Coatom 66.4 3.1E+02 0.0068 34.1 19.0 100 19-131 35-145 (443)
374 COG3386 Gluconolactonase [Carb 66.1 1.1E+02 0.0023 36.1 14.3 112 560-686 152-272 (307)
375 PF14655 RAB3GAP2_N: Rab3 GTPa 65.9 33 0.00072 41.9 10.3 86 616-716 302-407 (415)
376 PRK13616 lipoprotein LpqB; Pro 63.6 41 0.00088 43.3 11.0 97 571-686 350-464 (591)
377 PF06977 SdiA-regulated: SdiA- 63.0 1.4E+02 0.0031 33.9 14.1 111 564-689 15-137 (248)
378 PF08167 RIX1: rRNA processing 62.7 1E+02 0.0022 32.7 12.3 55 1256-1316 90-148 (165)
379 PF11715 Nup160: Nucleoporin N 59.9 39 0.00085 43.1 10.1 30 591-620 230-259 (547)
380 PRK13616 lipoprotein LpqB; Pro 59.7 1.9E+02 0.0042 37.2 16.1 94 573-685 399-512 (591)
381 PF07569 Hira: TUP1-like enhan 59.3 60 0.0013 36.2 10.1 66 639-713 22-101 (219)
382 PF10313 DUF2415: Uncharacteri 58.6 36 0.00077 27.7 5.8 34 622-658 1-34 (43)
383 PF14500 MMS19_N: Dos2-interac 58.3 51 0.0011 37.8 9.6 152 1148-1315 3-157 (262)
384 COG0823 TolB Periplasmic compo 56.8 54 0.0012 40.4 10.1 96 601-711 218-318 (425)
385 KOG0212 Uncharacterized conser 56.7 5E+02 0.011 32.8 17.5 156 1141-1310 81-240 (675)
386 PF15390 DUF4613: Domain of un 55.8 1.5E+02 0.0032 37.4 13.1 121 568-707 54-186 (671)
387 PF06433 Me-amine-dh_H: Methyl 54.8 23 0.00051 41.7 6.1 60 650-717 270-330 (342)
388 PF03178 CPSF_A: CPSF A subuni 54.3 4.2E+02 0.0091 31.1 18.9 136 190-377 62-203 (321)
389 TIGR03074 PQQ_membr_DH membran 53.9 5.3E+02 0.011 34.5 18.9 61 648-716 413-486 (764)
390 TIGR03074 PQQ_membr_DH membran 52.9 2.2E+02 0.0047 38.0 15.2 124 592-716 195-353 (764)
391 PF05694 SBP56: 56kDa selenium 52.9 1.2E+02 0.0025 37.2 11.5 99 600-708 221-343 (461)
392 COG5167 VID27 Protein involved 50.9 73 0.0016 39.0 9.3 60 639-707 573-632 (776)
393 KOG4499 Ca2+-binding protein R 50.8 3.4E+02 0.0074 30.5 13.5 91 624-727 160-261 (310)
394 PF12755 Vac14_Fab1_bd: Vacuol 49.6 47 0.001 32.0 6.4 55 1255-1313 4-58 (97)
395 TIGR03075 PQQ_enz_alc_DH PQQ-d 49.4 2.4E+02 0.0052 35.9 14.5 60 649-717 441-500 (527)
396 KOG4499 Ca2+-binding protein R 48.7 2.3E+02 0.0049 31.8 11.8 105 572-687 159-272 (310)
397 PF14583 Pectate_lyase22: Olig 48.5 4.4E+02 0.0096 32.0 15.4 177 514-722 34-238 (386)
398 PF05694 SBP56: 56kDa selenium 48.1 2.6E+02 0.0056 34.4 13.4 46 111-156 221-267 (461)
399 PF14727 PHTB1_N: PTHB1 N-term 46.2 6.6E+02 0.014 31.0 23.1 44 28-74 37-82 (418)
400 PF06977 SdiA-regulated: SdiA- 46.1 5E+02 0.011 29.6 16.8 103 569-686 116-238 (248)
401 KOG2171 Karyopherin (importin) 45.5 5.2E+02 0.011 35.3 16.5 168 1124-1315 59-239 (1075)
402 KOG2395 Protein involved in va 44.4 1.7E+02 0.0036 36.4 11.0 58 592-657 442-500 (644)
403 PF10168 Nup88: Nuclear pore c 44.4 3.2E+02 0.0069 36.1 14.7 71 623-708 86-180 (717)
404 PF00930 DPPIV_N: Dipeptidyl p 44.2 51 0.0011 39.5 7.1 56 648-713 22-77 (353)
405 COG3386 Gluconolactonase [Carb 43.6 2.9E+02 0.0062 32.6 12.9 101 610-724 151-259 (307)
406 TIGR03075 PQQ_enz_alc_DH PQQ-d 43.0 3.2E+02 0.007 34.7 14.3 122 592-716 70-198 (527)
407 PF12768 Rax2: Cortical protei 42.9 3.4E+02 0.0074 31.6 13.1 99 600-709 15-125 (281)
408 KOG1059 Vesicle coat complex A 42.6 1.7E+02 0.0036 37.7 10.9 144 1136-1314 136-282 (877)
409 PF00780 CNH: CNH domain; Int 42.3 5.5E+02 0.012 29.0 21.6 59 592-661 106-169 (275)
410 PF04388 Hamartin: Hamartin pr 38.6 1.9E+02 0.0041 37.9 11.3 133 1148-1317 8-143 (668)
411 PF07676 PD40: WD40-like Beta 38.0 76 0.0017 24.5 4.9 28 16-43 8-38 (39)
412 cd08050 TAF6 TATA Binding Prot 37.7 92 0.002 37.3 7.8 79 1234-1316 213-302 (343)
413 PF10313 DUF2415: Uncharacteri 37.7 70 0.0015 26.1 4.5 30 18-47 2-34 (43)
414 KOG4460 Nuclear pore complex, 37.5 3.7E+02 0.0079 33.6 12.3 76 623-712 105-203 (741)
415 PRK10115 protease 2; Provision 37.4 9E+02 0.019 31.9 17.4 112 573-706 129-254 (686)
416 TIGR02276 beta_rpt_yvtn 40-res 37.3 1.1E+02 0.0023 23.8 5.7 38 639-677 3-41 (42)
417 COG3490 Uncharacterized protei 36.8 5.5E+02 0.012 29.8 12.8 99 564-683 113-239 (366)
418 COG3490 Uncharacterized protei 35.9 4.1E+02 0.0089 30.8 11.6 86 188-297 89-180 (366)
419 PF10647 Gmad1: Lipoprotein Lp 33.8 7.2E+02 0.016 28.2 14.0 114 572-706 25-143 (253)
420 KOG2973 Uncharacterized conser 33.2 2.4E+02 0.0053 32.9 9.5 122 1147-1292 6-144 (353)
421 PF10168 Nup88: Nuclear pore c 33.1 2.8E+02 0.0062 36.6 11.7 89 9-122 77-181 (717)
422 PF14583 Pectate_lyase22: Olig 33.1 3.5E+02 0.0077 32.8 11.4 148 556-716 16-185 (386)
423 PHA02713 hypothetical protein; 32.9 2.9E+02 0.0063 35.4 11.7 75 639-721 464-547 (557)
424 PF14761 HPS3_N: Hermansky-Pud 32.9 3.7E+02 0.008 29.9 10.6 100 594-709 31-165 (215)
425 PHA02663 hypothetical protein; 32.7 36 0.00078 33.6 2.6 42 1148-1190 74-120 (172)
426 PF14870 PSII_BNR: Photosynthe 32.7 8.8E+02 0.019 28.5 17.8 105 568-688 142-251 (302)
427 PF07569 Hira: TUP1-like enhan 32.4 2.1E+02 0.0045 31.9 9.0 24 592-615 23-46 (219)
428 TIGR02276 beta_rpt_yvtn 40-res 32.3 1.4E+02 0.0031 23.0 5.7 28 592-619 5-32 (42)
429 PTZ00429 beta-adaptin; Provisi 30.6 7.1E+02 0.015 33.2 14.7 44 1126-1169 87-130 (746)
430 PF13513 HEAT_EZ: HEAT-like re 30.4 31 0.00066 29.0 1.6 49 1121-1170 6-54 (55)
431 PF13513 HEAT_EZ: HEAT-like re 29.4 86 0.0019 26.2 4.2 45 1254-1298 4-48 (55)
432 PF10193 Telomere_reg-2: Telom 28.9 1.9E+02 0.004 28.8 7.0 71 1233-1303 1-78 (114)
433 PF02985 HEAT: HEAT repeat; I 27.8 60 0.0013 24.0 2.6 23 1006-1028 2-24 (31)
434 COG5181 HSH155 U2 snRNP splice 27.4 5.1E+02 0.011 33.0 11.4 163 1117-1312 703-871 (975)
435 PF10508 Proteasom_PSMB: Prote 26.9 7.8E+02 0.017 31.1 13.9 160 1126-1311 59-231 (503)
436 KOG3630 Nuclear pore complex, 26.6 1.9E+02 0.0041 39.2 8.1 103 570-688 155-262 (1405)
437 PF01602 Adaptin_N: Adaptin N 25.7 3.4E+02 0.0073 34.1 10.6 36 1138-1173 108-143 (526)
438 PF12234 Rav1p_C: RAVE protein 25.6 5.4E+02 0.012 33.4 11.9 85 555-655 56-154 (631)
439 KOG3630 Nuclear pore complex, 25.2 1.5E+02 0.0031 40.1 6.8 101 592-706 115-227 (1405)
440 TIGR02604 Piru_Ver_Nterm putat 24.4 6.1E+02 0.013 30.5 11.9 57 622-685 124-199 (367)
441 PF04841 Vps16_N: Vps16, N-ter 23.6 1.4E+03 0.031 28.0 25.1 59 621-685 216-275 (410)
442 PHA03098 kelch-like protein; P 23.6 6.6E+02 0.014 31.8 12.6 106 592-710 391-514 (534)
443 PF12348 CLASP_N: CLASP N term 23.0 4.9E+02 0.011 28.6 10.1 54 1121-1179 72-125 (228)
444 PF07676 PD40: WD40-like Beta 22.8 1.6E+02 0.0034 22.7 4.3 21 668-688 7-27 (39)
445 PF01602 Adaptin_N: Adaptin N 22.3 3.9E+02 0.0084 33.6 10.1 135 1125-1285 60-199 (526)
446 COG3204 Uncharacterized protei 22.2 3.7E+02 0.008 31.3 8.5 82 618-713 82-164 (316)
447 PTZ00429 beta-adaptin; Provisi 21.9 2E+03 0.043 29.1 19.4 147 1120-1291 197-348 (746)
448 PF14761 HPS3_N: Hermansky-Pud 21.8 3.9E+02 0.0084 29.7 8.4 62 640-704 29-92 (215)
449 KOG1062 Vesicle coat complex A 21.5 3.3E+02 0.0073 35.6 8.8 113 1181-1307 265-379 (866)
450 KOG1060 Vesicle coat complex A 20.7 1.6E+03 0.035 29.8 14.3 184 1122-1315 302-515 (968)
451 KOG3616 Selective LIM binding 20.5 1.5E+02 0.0032 37.9 5.3 71 18-124 16-86 (1636)
452 KOG3522 Predicted guanine nucl 20.2 1.4E+02 0.0031 39.0 5.2 68 606-685 614-684 (925)
453 PF10274 ParcG: Parkin co-regu 20.2 3.4E+02 0.0073 29.4 7.4 56 1248-1303 49-105 (183)
No 1
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-39 Score=379.00 Aligned_cols=544 Identities=15% Similarity=0.129 Sum_probs=387.3
Q ss_pred CceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeC-cCcCEEEeeeccccccccCcccccccccccCcc
Q 000673 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCG-HSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1358)
Q Consensus 16 ~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~G-H~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1358)
...|++++++||++.|++++..+.+++|++.+ .+.+..+.+ |++||.-++|
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~t-----gk~irswKa~He~Pvi~ma~----------------------- 113 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPT-----GKLIRSWKAIHEAPVITMAF----------------------- 113 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEccc-----chHhHhHhhccCCCeEEEEE-----------------------
Confidence 34599999999999999999999999999997 466667777 9999999977
Q ss_pred cccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcccccccccccccc
Q 000673 95 MGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGD 174 (1358)
Q Consensus 95 ~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~ 174 (1358)
.|.+..|++|+.||.++|||+..+.|.+..+.+| +..+.+.+.+ ...+ .+..+|
T Consensus 114 ----~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g--GvVssl~F~~-~~~~-~lL~sg------------------ 167 (775)
T KOG0319|consen 114 ----DPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG--GVVSSLLFHP-HWNR-WLLASG------------------ 167 (775)
T ss_pred ----cCCCceEEeccccceEEEEEeeCCEEEEEecCCC--ceEEEEEeCC-ccch-hheeec------------------
Confidence 5778999999999999999999999999988762 2223333222 2222 222222
Q ss_pred cccccccCCCCCCCCceEEEEeCCCce-EEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCccc
Q 000673 175 LVSEDKEVPMKNPPKCTLVIVDTYGLT-IVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHL 253 (1358)
Q Consensus 175 ~~s~d~~~~~~~~~~~~I~i~D~~tl~-v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~ 253 (1358)
..++.+++||..+.. ++.++.. |...|++++|.. | ...+++++.|.++-||++..-
T Consensus 168 ------------~~D~~v~vwnl~~~~tcl~~~~~---H~S~vtsL~~~~---d---~~~~ls~~RDkvi~vwd~~~~-- 224 (775)
T KOG0319|consen 168 ------------ATDGTVRVWNLNDKRTCLHTMIL---HKSAVTSLAFSE---D---SLELLSVGRDKVIIVWDLVQY-- 224 (775)
T ss_pred ------------CCCceEEEEEcccCchHHHHHHh---hhhheeeeeecc---C---CceEEEeccCcEEEEeehhhh--
Confidence 267899999988554 3666666 777899999985 3 569999999999999999542
Q ss_pred ccccCCcceecCCcccceEeccCcccCceEEEEecC-----CcEEEEEecCce--EEeecCCCcccceeeeeecceeeec
Q 000673 254 DREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATC-----GNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEG 326 (1358)
Q Consensus 254 ~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~d-----g~~~~~~~~~~~--i~d~l~~~~~~~~~~~~~~~l~~~~ 326 (1358)
+....-|+|+. +.++.+.++ |..+.+++.++. +|+. ++++..... .
T Consensus 225 ~~l~~lp~ye~----------------~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~-es~~~~~~~----------~ 277 (775)
T KOG0319|consen 225 KKLKTLPLYES----------------LESVVRLREELGGKGEYIITAGGSGVVQYWDS-ESGKCVYKQ----------R 277 (775)
T ss_pred hhhheechhhh----------------eeeEEEechhcCCcceEEEEecCCceEEEEec-ccchhhhhh----------c
Confidence 12233344443 355555555 667888887776 6665 333222222 1
Q ss_pred CCCCCceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeEe
Q 000673 327 GSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFI 406 (1358)
Q Consensus 327 ~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~ 406 (1358)
.+....+.+++..+... .+++-+.+..+.+|+.... .-+....++++.+...+|.
T Consensus 278 ~~~~~e~~~~~~~~~~~----------------~~l~vtaeQnl~l~d~~~l---------~i~k~ivG~ndEI~Dm~~l 332 (775)
T KOG0319|consen 278 QSDSEEIDHLLAIESMS----------------QLLLVTAEQNLFLYDEDEL---------TIVKQIVGYNDEILDMKFL 332 (775)
T ss_pred cCCchhhhcceeccccC----------------ceEEEEccceEEEEEcccc---------EEehhhcCCchhheeeeec
Confidence 11112233444441222 5677777788888876542 2233344667777777775
Q ss_pred ecc-ceEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeeccccccC--CCCccccccccccc
Q 000673 407 QMS-LYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDE--NEGSCTGKSDLTFC 483 (1358)
Q Consensus 407 ~~~-~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~--~~g~~i~~l~~t~~ 483 (1358)
-.. ++++-.. + .|.+|+|.+... .++ +..|..+-. ..++ .+| +.+++.+.
T Consensus 333 G~e~~~laVAT-------N----s~~lr~y~~~~~------~c~-ii~GH~e~v------lSL~~~~~g---~llat~sK 385 (775)
T KOG0319|consen 333 GPEESHLAVAT-------N----SPELRLYTLPTS------YCQ-IIPGHTEAV------LSLDVWSSG---DLLATGSK 385 (775)
T ss_pred CCccceEEEEe-------C----CCceEEEecCCC------ceE-EEeCchhhe------eeeeecccC---cEEEEecC
Confidence 433 3444332 1 245888854332 344 555543221 1222 223 25778888
Q ss_pred CCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEE
Q 000673 484 QDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR 563 (1358)
Q Consensus 484 ~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~ 563 (1358)
+..+.+|+..++-....+.....+|++.|+++.. ....+..+++++.|+++++|.+...... +. .....+.
T Consensus 386 D~svilWr~~~~~~~~~~~a~~~gH~~svgava~---~~~~asffvsvS~D~tlK~W~l~~s~~~-~~-----~~~~~~~ 456 (775)
T KOG0319|consen 386 DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG---SKLGASFFVSVSQDCTLKLWDLPKSKET-AF-----PIVLTCR 456 (775)
T ss_pred CceEEEEEecCCcchhhhhhhhcccccccceeee---cccCccEEEEecCCceEEEecCCCcccc-cc-----cceehhh
Confidence 9999999995544433555667899999999775 3333445999999999999776531110 00 0001122
Q ss_pred EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEE
Q 000673 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1358)
Q Consensus 564 ~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~ 643 (1358)
.+-..|...|+|++++ |+. .+++|||+|++.++|+++.+..+.++.||+..|.|+.|+|. .++++
T Consensus 457 ~t~~aHdKdIN~Vaia-----~nd----kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~------dq~la 521 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIA-----PND----KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN------DQLLA 521 (775)
T ss_pred HHHHhhcccccceEec-----CCC----ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc------cceeE
Confidence 2346799999999998 554 89999999999999999999999999999999999999999 89999
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceE
Q 000673 644 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSM 723 (1358)
Q Consensus 644 S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~ 723 (1358)
|+|.|++|+||.+.+..|+++|.||...|..+.|-.+|..|+++| .||-|++|++++++|++++.+|.+.|.
T Consensus 522 T~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~--------adGliKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG--------ADGLIKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred eccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc--------CCCcEEEEeccchhhhhhhhhccceeE
Confidence 999999999999999999999999999999999999999999533 349999999999999999999999998
Q ss_pred EEeeecccccceeecceecCcccccCCccccccCCcEEEEe
Q 000673 724 FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 724 ~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~ 764 (1358)
.+...+... -.++|. .|+.+-.|.
T Consensus 594 aL~~~~~~~-~~~tgg----------------~Dg~i~~wk 617 (775)
T KOG0319|consen 594 ALSVSPLLD-MFVTGG----------------GDGRIIFWK 617 (775)
T ss_pred EEeecCccc-eeEecC----------------CCeEEEEee
Confidence 774332221 223332 499999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-37 Score=335.85 Aligned_cols=363 Identities=20% Similarity=0.215 Sum_probs=277.4
Q ss_pred CCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccC
Q 000673 13 TPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSS 92 (1358)
Q Consensus 13 ~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (1358)
..|...|-|++|+|+|+.||||+.|.++++||+.+ ..|.++..||...|.|+++
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-----eTp~~t~KgH~~WVlcvaw--------------------- 165 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-----ETPLFTCKGHKNWVLCVAW--------------------- 165 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCC-----CCcceeecCCccEEEEEEE---------------------
Confidence 35677899999999999999999999999999998 7899999999999999965
Q ss_pred cccccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCC-----CCCceEEEEeeccCCccccccc
Q 000673 93 NVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPS-----NPRYVCIGCCFIDTNQLSDHHS 167 (1358)
Q Consensus 93 ~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~-----~~~~~~l~c~~~~~~~~~~~~~ 167 (1358)
+||++.|+|||.||+|++||-.+|+++-+ .++ +.-..|..+.- .+.-..+..++
T Consensus 166 ------sPDgk~iASG~~dg~I~lwdpktg~~~g~-~l~---gH~K~It~Lawep~hl~p~~r~las~s----------- 224 (480)
T KOG0271|consen 166 ------SPDGKKIASGSKDGSIRLWDPKTGQQIGR-ALR---GHKKWITALAWEPLHLVPPCRRLASSS----------- 224 (480)
T ss_pred ------CCCcchhhccccCCeEEEecCCCCCcccc-ccc---CcccceeEEeecccccCCCccceeccc-----------
Confidence 89999999999999999999999998754 233 33333443331 11112333333
Q ss_pred ccccccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEec
Q 000673 168 FESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPI 247 (1358)
Q Consensus 168 ~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~ 247 (1358)
.+++|+|||...+++++++.. |..+|+|+..= | +.++.++|.|+++|+|+
T Consensus 225 --------------------kDg~vrIWd~~~~~~~~~lsg---HT~~VTCvrwG--G-----~gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 225 --------------------KDGSVRIWDTKLGTCVRTLSG---HTASVTCVRWG--G-----EGLIYSGSQDRTIKVWR 274 (480)
T ss_pred --------------------CCCCEEEEEccCceEEEEecc---CccceEEEEEc--C-----CceEEecCCCceEEEEE
Confidence 789999999999999999999 99999988763 2 45999999999999999
Q ss_pred ccCcccccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCceEEeecCCCcccceeeeeecceeeecC
Q 000673 248 SKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGG 327 (1358)
Q Consensus 248 l~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~i~d~l~~~~~~~~~~~~~~~l~~~~~ 327 (1358)
...+. ....+.+|...|..++++.|= +.+. |.|
T Consensus 275 a~dG~-----------------~~r~lkGHahwvN~lalsTdy-----------~LRt-------gaf------------ 307 (480)
T KOG0271|consen 275 ALDGK-----------------LCRELKGHAHWVNHLALSTDY-----------VLRT-------GAF------------ 307 (480)
T ss_pred ccchh-----------------HHHhhcccchheeeeeccchh-----------hhhc-------ccc------------
Confidence 87641 233456776677777765432 1111 111
Q ss_pred CCCCceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeEee
Q 000673 328 STNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQ 407 (1358)
Q Consensus 328 ~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~ 407 (1358)
-+.+. .. . +.
T Consensus 308 -----------~~t~~----------------~~------------~-~~------------------------------ 317 (480)
T KOG0271|consen 308 -----------DHTGR----------------KP------------K-SF------------------------------ 317 (480)
T ss_pred -----------ccccc----------------cC------------C-Ch------------------------------
Confidence 10000 00 0 00
Q ss_pred ccceEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeeccccccCCCCcccccccccccCCcc
Q 000673 408 MSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTV 487 (1358)
Q Consensus 408 ~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i 487 (1358)
+ .++. +-+.+
T Consensus 318 ---------s----e~~~-----------------------~Al~r---------------------------------- 327 (480)
T KOG0271|consen 318 ---------S----EEQK-----------------------KALER---------------------------------- 327 (480)
T ss_pred ---------H----HHHH-----------------------HHHHH----------------------------------
Confidence 0 0000 00000
Q ss_pred ccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEe
Q 000673 488 PRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL 567 (1358)
Q Consensus 488 ~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~ 567 (1358)
++. +. ...|.++++|+.|+++++|+- .++.+++..+.
T Consensus 328 --Y~~-------------------~~--------~~~~erlVSgsDd~tlflW~p--------------~~~kkpi~rmt 364 (480)
T KOG0271|consen 328 --YEA-------------------VL--------KDSGERLVSGSDDFTLFLWNP--------------FKSKKPITRMT 364 (480)
T ss_pred --HHH-------------------hh--------ccCcceeEEecCCceEEEecc--------------cccccchhhhh
Confidence 000 00 011223899999999999442 23455788899
Q ss_pred cCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC
Q 000673 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1358)
Q Consensus 568 gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~ 647 (1358)
||..-|+.+.|+ ||+ .+++|+|-|++|++||-++|+.+.+|.||.++|.+++|+.| .++++|||.
T Consensus 365 gHq~lVn~V~fS-----Pd~----r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD------sRLlVS~Sk 429 (480)
T KOG0271|consen 365 GHQALVNHVSFS-----PDG----RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD------SRLLVSGSK 429 (480)
T ss_pred chhhheeeEEEC-----CCc----cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC------ccEEEEcCC
Confidence 999999999998 898 99999999999999999999999999999999999999999 799999999
Q ss_pred CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEE
Q 000673 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1358)
Q Consensus 648 D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd 705 (1358)
|.++++||+++.+....++||...|+++.|+|||..+++|+ .|..+++|-
T Consensus 430 DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg--------kdkv~~lw~ 479 (480)
T KOG0271|consen 430 DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG--------KDKVLRLWR 479 (480)
T ss_pred CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC--------CceEEEeec
Confidence 99999999999999999999999999999999999998433 348999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.6e-36 Score=350.95 Aligned_cols=508 Identities=15% Similarity=0.123 Sum_probs=359.3
Q ss_pred CCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCc
Q 000673 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1358)
Q Consensus 14 ~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1358)
-|+.+|--++|.|.|..|+||+.||.+++||+.. ....+.|.||.+.|.++.|-+.
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~-----~~~th~fkG~gGvVssl~F~~~------------------- 158 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKN-----GYCTHSFKGHGGVVSSLLFHPH------------------- 158 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeC-----CEEEEEecCCCceEEEEEeCCc-------------------
Confidence 3778899999999999999999999999999995 6778999999999999988433
Q ss_pred ccccccCCCCeEEEeeCCCeEEEEECCCCc-eEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcccccccccccc
Q 000673 94 VMGKSSLDNGALISACTDGVLCVWSRSSGH-CRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVE 172 (1358)
Q Consensus 94 ~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~-c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~ 172 (1358)
+....|+++..|+++++||+.+++ |......| -+.+..+...++...+...+
T Consensus 159 ------~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H-----~S~vtsL~~~~d~~~~ls~~---------------- 211 (775)
T KOG0319|consen 159 ------WNRWLLASGATDGTVRVWNLNDKRTCLHTMILH-----KSAVTSLAFSEDSLELLSVG---------------- 211 (775)
T ss_pred ------cchhheeecCCCceEEEEEcccCchHHHHHHhh-----hhheeeeeeccCCceEEEec----------------
Confidence 555789999999999999999554 45444443 44555555444433344444
Q ss_pred cccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCcc
Q 000673 173 GDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESH 252 (1358)
Q Consensus 173 g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~ 252 (1358)
.+..|.|||..+-+.+.++.- ...+-+..+.+. +.+.++..+.+.+.+|++++|+.++..
T Consensus 212 ---------------RDkvi~vwd~~~~~~l~~lp~----ye~~E~vv~l~~-~~~~~~~~~~TaG~~g~~~~~d~es~~ 271 (775)
T KOG0319|consen 212 ---------------RDKVIIVWDLVQYKKLKTLPL----YESLESVVRLRE-ELGGKGEYIITAGGSGVVQYWDSESGK 271 (775)
T ss_pred ---------------cCcEEEEeehhhhhhhheech----hhheeeEEEech-hcCCcceEEEEecCCceEEEEecccch
Confidence 678899999866554444432 111455555544 344447799999999999999998752
Q ss_pred cccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce--EEeecCCCcccceeeeeecceeeecCCCC
Q 000673 253 LDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTN 330 (1358)
Q Consensus 253 ~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~~~~~~~~~~l~~~~~~~~ 330 (1358)
.+++..... .+....+...+..+.++++..+.. +||. ++.+.+..+ ...+
T Consensus 272 -------~~~~~~~~~---------~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~-~~l~i~k~i-----------vG~n 323 (775)
T KOG0319|consen 272 -------CVYKQRQSD---------SEEIDHLLAIESMSQLLLVTAEQNLFLYDE-DELTIVKQI-----------VGYN 323 (775)
T ss_pred -------hhhhhccCC---------chhhhcceeccccCceEEEEccceEEEEEc-cccEEehhh-----------cCCc
Confidence 122210000 112344444555566677777776 5554 333333322 1234
Q ss_pred CceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeEeeccc
Q 000673 331 SYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSL 410 (1358)
Q Consensus 331 ~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~ 410 (1358)
.-+..-.|+ ..+ ...++|++..+.+++|+++.... .| ..+|.+.+.++.-..+|.
T Consensus 324 dEI~Dm~~l-G~e--------------~~~laVATNs~~lr~y~~~~~~c--------~i--i~GH~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 324 DEILDMKFL-GPE--------------ESHLAVATNSPELRLYTLPTSYC--------QI--IPGHTEAVLSLDVWSSGD 378 (775)
T ss_pred hhheeeeec-CCc--------------cceEEEEeCCCceEEEecCCCce--------EE--EeCchhheeeeeecccCc
Confidence 455666677 222 22899999999999998887421 11 123445555565445556
Q ss_pred eEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeecccc--ccCCCCcccccccccccCCccc
Q 000673 411 YLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTF--LDENEGSCTGKSDLTFCQDTVP 488 (1358)
Q Consensus 411 ~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~--~~~~~g~~i~~l~~t~~~s~i~ 488 (1358)
+|++.+ .|.+ +++|.++.. ..+...-+...|. .+.+. ..+..+. --+.+.+++.+++
T Consensus 379 llat~s-----KD~s------vilWr~~~~------~~~~~~~a~~~gH--~~svgava~~~~~a--sffvsvS~D~tlK 437 (775)
T KOG0319|consen 379 LLATGS-----KDKS------VILWRLNNN------CSKSLCVAQANGH--TNSVGAVAGSKLGA--SFFVSVSQDCTLK 437 (775)
T ss_pred EEEEec-----CCce------EEEEEecCC------cchhhhhhhhccc--ccccceeeecccCc--cEEEEecCCceEE
Confidence 777765 5555 999976221 1111111111111 00000 1111111 1366778899999
Q ss_pred cccccCCCCCCC-----ceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEE
Q 000673 489 RSEHVDSRQAGD-----GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR 563 (1358)
Q Consensus 489 ~W~~~~~~~~~~-----~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~ 563 (1358)
+|.....++... .......|...|+++.+.+++.. +++|+.|.+.++|+ ++.+...
T Consensus 438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL----iAT~SqDktaKiW~---------------le~~~l~ 498 (775)
T KOG0319|consen 438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL----IATGSQDKTAKIWD---------------LEQLRLL 498 (775)
T ss_pred EecCCCcccccccceehhhHHHHhhcccccceEecCCCce----EEecccccceeeec---------------ccCceEE
Confidence 999987554432 22234679999999998888887 99999999999944 4566688
Q ss_pred EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEE
Q 000673 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1358)
Q Consensus 564 ~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~ 643 (1358)
.+|.||+..|+|+.|+ |.. +.++|+|.|+||+||.+.+..|+.+|.||+..|..+.|-.+ |..|+
T Consensus 499 ~vLsGH~RGvw~V~Fs-----~~d----q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~------~~qli 563 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFS-----KND----QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN------GKQLI 563 (775)
T ss_pred EEeeCCccceEEEEec-----ccc----ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC------CcEEE
Confidence 9999999999999998 444 89999999999999999999999999999999999999988 89999
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 644 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 644 S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
|++.||-+++|++.++.|++++..|...|++++-+|.+.++++|+ + ||.|.+|.=-|
T Consensus 564 S~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg------~--Dg~i~~wkD~T 620 (775)
T KOG0319|consen 564 SAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGG------G--DGRIIFWKDVT 620 (775)
T ss_pred eccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecC------C--CeEEEEeecCc
Confidence 999999999999999999999999999999999999999988543 3 48999996433
No 4
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.3e-33 Score=323.78 Aligned_cols=571 Identities=15% Similarity=0.089 Sum_probs=376.1
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCcccc
Q 000673 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMG 96 (1358)
Q Consensus 17 h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1358)
..|||+.-+||.-+||.|.+||.|+||++.+ ..+..++.||++.|+++.|
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s-----~~~~~tfngHK~AVt~l~f------------------------- 115 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLES-----EEILITFNGHKAAVTTLKF------------------------- 115 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCC-----CceeeeecccccceEEEEE-------------------------
Confidence 4699999999999999999999999999996 4677889999999999977
Q ss_pred cccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcccccccccccccccc
Q 000673 97 KSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLV 176 (1358)
Q Consensus 97 ~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~~~ 176 (1358)
+..|.+|+|||.|+.|.|||+-.-.-+.+...| -.+.+...++. .+...+.|+
T Consensus 116 --d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GH--kd~iT~~~F~~--~~~~lvS~s--------------------- 168 (888)
T KOG0306|consen 116 --DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGH--KDSITQALFLN--GDSFLVSVS--------------------- 168 (888)
T ss_pred --cccCceEeecCCCccEEEEEeccceeeEEeecc--hHHHhHHhccC--CCeEEEEec---------------------
Confidence 566899999999999999999844333333333 12233333332 122223332
Q ss_pred cccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCcccccc
Q 000673 177 SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDRE 256 (1358)
Q Consensus 177 s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~~~~ 256 (1358)
.+..|..||..+..++.+... +.+.+.+|++.. ..+++++.|+.++||++..++-+..
T Consensus 169 -----------KDs~iK~WdL~tqhCf~Thvd---~r~Eiw~l~~~~--------~~lvt~~~dse~~v~~L~~~~D~~~ 226 (888)
T KOG0306|consen 169 -----------KDSMIKFWDLETQHCFETHVD---HRGEIWALVLDE--------KLLVTAGTDSELKVWELAFEDDEKE 226 (888)
T ss_pred -----------cCceEEEEecccceeeeEEec---ccceEEEEEEec--------ceEEEEecCCceEEEEeeccccccc
Confidence 688999999999999999888 888999999862 3899999999999999965532222
Q ss_pred cCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce--EEeecCCCcccceeee----ee-cceeee----
Q 000673 257 EGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICF----VD-NLFCLE---- 325 (1358)
Q Consensus 257 ~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~~~~~~----~~-~~l~~~---- 325 (1358)
..+++.-. +...+ .....+....++..+.++.+++-+.|+. +|++.........++- .. .....+
T Consensus 227 ~~~~~s~~--~~G~~--~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 227 TNRYISTK--LRGTF--IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccceee--cccee--eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence 22222211 11111 1111223344555666777777777776 6666433322111100 00 000000
Q ss_pred -------------cCCCCCceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCC-ccccCCCccccC
Q 000673 326 -------------GGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMN-EKFDYEPHFEIP 391 (1358)
Q Consensus 326 -------------~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~-~~~~~~~~~~i~ 391 (1358)
.-..........+.+++. .. ..++.-.+..+.+|.++... ....+.... -.
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~-------------~~-~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~-~i 367 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGG-------------TE-NTLVLLANNTVEWYSLENSGKTSPEADRTS-NI 367 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCC-------------cc-eeEEEeecCceEEEEeccCCCCCccccccc-ee
Confidence 000001111222221111 11 22333555667788887621 111111111 11
Q ss_pred CccCCCCCceeEeEeeccceEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeeccccccCCC
Q 000673 392 AVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENE 471 (1358)
Q Consensus 392 ~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~ 471 (1358)
...+++.++..++++.+...+.+.. .+. +++|+.... +-.+.+..+..-+....|.
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga------~~S------ikiWn~~t~-----kciRTi~~~y~l~~~Fvpg------- 423 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGA------GES------IKIWNRDTL-----KCIRTITCGYILASKFVPG------- 423 (888)
T ss_pred eeccchhheeEEEeecCceeeeecC------CCc------EEEEEccCc-----ceeEEeccccEEEEEecCC-------
Confidence 2346778888999988866665442 233 889974321 1123333331111111110
Q ss_pred CcccccccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCC
Q 000673 472 GSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSP 551 (1358)
Q Consensus 472 g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~ 551 (1358)
+. .+..+...+.+.+++.... .+......|.+.+.++...+++.. .++|+.|.+|++|+|........+
T Consensus 424 d~---~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHdgaIWsi~~~pD~~g----~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 424 DR---YIVLGTKNGELQVFDLASA----SLVETIRAHDGAIWSISLSPDNKG----FVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred Cc---eEEEeccCCceEEEEeehh----hhhhhhhccccceeeeeecCCCCc----eEEecCCcEEEEEeEEEEeccCcc
Confidence 00 1233344445555555433 334445679999999999999987 999999999999988543221000
Q ss_pred C-CccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeC
Q 000673 552 G-ASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILS 630 (1358)
Q Consensus 552 ~-~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~s 630 (1358)
. +.-.+. ..++| .-.+.|.|+.++ ||| ++|+.+=.|.||++|-+++.+..-++.||.-||.|+.++
T Consensus 493 ~~k~lsl~---~~rtL-el~ddvL~v~~S-----pdg----k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 493 QKKVLSLK---HTRTL-ELEDDVLCVSVS-----PDG----KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred cceeeeec---cceEE-eccccEEEEEEc-----CCC----cEEEEEeccCeEEEEEecceeeeeeecccccceeEEecc
Confidence 0 000000 11122 235789999998 899 999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe
Q 000673 631 PPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1358)
Q Consensus 631 pd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~ 710 (1358)
|| +..+++||.|++|++|-++-|.|-+.|-+|...|.+|.|-|...++.+ +++|+.|+-||-+.-+
T Consensus 560 ~D------SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt--------~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 560 PD------SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT--------CGKDGKVKQWDGEKFE 625 (888)
T ss_pred CC------cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE--------ecCcceEEeechhhhh
Confidence 99 899999999999999999999999999999999999999998887774 3346999999999999
Q ss_pred EEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEe
Q 000673 711 RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 711 ~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~ 764 (1358)
+++++.||...| +|....+ +|.+++|++- |.++|.|.
T Consensus 626 ~iq~L~~H~~ev----~cLav~~--------~G~~vvs~sh-----D~sIRlwE 662 (888)
T KOG0306|consen 626 EIQKLDGHHSEV----WCLAVSP--------NGSFVVSSSH-----DKSIRLWE 662 (888)
T ss_pred hheeeccchhee----eeeEEcC--------CCCeEEeccC-----CceeEeee
Confidence 999999999999 4543333 4556666655 99999995
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-32 Score=297.58 Aligned_cols=209 Identities=25% Similarity=0.222 Sum_probs=169.3
Q ss_pred cccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEecccc-
Q 000673 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG- 583 (1358)
Q Consensus 505 ~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~- 583 (1358)
+.+|+.+|||+..--++ + +++|+.|++|++|+ ...|.+.+.|+||...|+.++.+..+.
T Consensus 243 lsgHT~~VTCvrwGG~g-l----iySgS~DrtIkvw~---------------a~dG~~~r~lkGHahwvN~lalsTdy~L 302 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEG-L----IYSGSQDRTIKVWR---------------ALDGKLCRELKGHAHWVNHLALSTDYVL 302 (480)
T ss_pred eccCccceEEEEEcCCc-e----EEecCCCceEEEEE---------------ccchhHHHhhcccchheeeeeccchhhh
Confidence 35688888886533222 2 89999999999954 446788999999999999998862211
Q ss_pred -----CCCCCc---------------------cCcEEEEEeCCCcEEEEeCC-CCcEEEEEecCCCcEEEEEeCCCCCCC
Q 000673 584 -----TAKGWS---------------------FNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEH 636 (1358)
Q Consensus 584 -----~~dg~~---------------------~~~~L~Sgs~D~tI~lWDl~-sg~~l~~~~~H~~~V~~l~~spd~~~~ 636 (1358)
.|.|++ ....|+|||.|+++.+|+-. +.+++.++.+|...|+.+.|+||
T Consensus 303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd---- 378 (480)
T KOG0271|consen 303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD---- 378 (480)
T ss_pred hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCC----
Confidence 011211 11469999999999999975 45588999999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 637 ~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
+.+++|+|.|++|+|||-++|+.+.+|+||-..|+.|+|+.|.++|++| +. |.+++|||+++.++...|.
T Consensus 379 --~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~------Sk--DsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 379 --GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSG------SK--DSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred --ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEc------CC--CceEEEEEeeeeeecccCC
Confidence 8999999999999999999999999999999999999999999999943 33 4899999999999999999
Q ss_pred CCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEe
Q 000673 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 717 GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~ 764 (1358)
||.++|..+.+.++... +++|. .|.-+|+|.
T Consensus 449 Gh~DEVf~vDwspDG~r-V~sgg----------------kdkv~~lw~ 479 (480)
T KOG0271|consen 449 GHADEVFAVDWSPDGQR-VASGG----------------KDKVLRLWR 479 (480)
T ss_pred CCCceEEEEEecCCCce-eecCC----------------CceEEEeec
Confidence 99999988877754332 22222 388899993
No 6
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-29 Score=292.78 Aligned_cols=505 Identities=15% Similarity=0.169 Sum_probs=336.6
Q ss_pred CCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCc
Q 000673 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1358)
Q Consensus 14 ~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1358)
.|...||++.|..+|..|+|||.|+.|++||+-. ...+..|.||...|+..-|
T Consensus 105 gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~-----E~Gl~rL~GHkd~iT~~~F---------------------- 157 (888)
T KOG0306|consen 105 GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVG-----EEGLFRLRGHKDSITQALF---------------------- 157 (888)
T ss_pred ccccceEEEEEcccCceEeecCCCccEEEEEecc-----ceeeEEeecchHHHhHHhc----------------------
Confidence 3666799999999999999999999999999985 5667889999999999855
Q ss_pred ccccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcccccccccccc-
Q 000673 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVE- 172 (1358)
Q Consensus 94 ~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~- 172 (1358)
.-+.++|+|.|+|+.|++||+.+.+|..+.-.| -..+..+...+ ..++.... +..-.+....+..-+
T Consensus 158 -----~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~-----r~Eiw~l~~~~-~~lvt~~~-dse~~v~~L~~~~D~~ 225 (888)
T KOG0306|consen 158 -----LNGDSFLVSVSKDSMIKFWDLETQHCFETHVDH-----RGEIWALVLDE-KLLVTAGT-DSELKVWELAFEDDEK 225 (888)
T ss_pred -----cCCCeEEEEeccCceEEEEecccceeeeEEecc-----cceEEEEEEec-ceEEEEec-CCceEEEEeecccccc
Confidence 234689999999999999999999999876544 22333333222 11111111 000000000000000
Q ss_pred --cccccc-cccCCCCCCCCceEEEEeCCCceEE-----------EEEEec-----------------------------
Q 000673 173 --GDLVSE-DKEVPMKNPPKCTLVIVDTYGLTIV-----------QTVFHG----------------------------- 209 (1358)
Q Consensus 173 --g~~~s~-d~~~~~~~~~~~~I~i~D~~tl~v~-----------~~l~s~----------------------------- 209 (1358)
....+. ......+...+..|...-..+...+ +++++.
T Consensus 226 ~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~ 305 (888)
T KOG0306|consen 226 ETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEK 305 (888)
T ss_pred cccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhh
Confidence 000000 0000011111112221111111100 000000
Q ss_pred -----------ccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCcccccccCCcceecCCcccceEeccCcc
Q 000673 210 -----------NLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVV 278 (1358)
Q Consensus 210 -----------~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~ 278 (1358)
......|.++.++++ .+. +..|+. -.++++.+..++... +....+.. . .-....+|.
T Consensus 306 sl~~~i~r~~~ir~~~kiks~dv~~~--~~~-~~~lv~-l~nNtv~~ysl~~s~--~~~p~~~~-----~-~~i~~~GHR 373 (888)
T KOG0306|consen 306 SLSDEIKRLETIRTSAKIKSFDVTPS--GGT-ENTLVL-LANNTVEWYSLENSG--KTSPEADR-----T-SNIEIGGHR 373 (888)
T ss_pred hHHHHHHHHHheechhheeEEEEEec--CCc-ceeEEE-eecCceEEEEeccCC--CCCccccc-----c-ceeeeccch
Confidence 000122778888865 333 334444 677788888777621 11111111 1 112457899
Q ss_pred cCceEEEEecCCcEEEEEecCce-EEeecCCCcccceeeeeecceeeecCCCCCceEEEEeecccchhcccccccccccc
Q 000673 279 EGGHLVSVATCGNIIALVLKDHC-IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTF 357 (1358)
Q Consensus 279 ~~v~~vs~s~dg~~~~~~~~~~~-i~d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~ 357 (1358)
..|+++.+|.+...+++.+...- +|.. .+.+.+..+ +. .+..+..|+ .+|
T Consensus 374 ~dVRsl~vS~d~~~~~Sga~~SikiWn~-~t~kciRTi------------~~-~y~l~~~Fv-pgd-------------- 424 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLASGAGESIKIWNR-DTLKCIRTI------------TC-GYILASKFV-PGD-------------- 424 (888)
T ss_pred hheeEEEeecCceeeeecCCCcEEEEEc-cCcceeEEe------------cc-ccEEEEEec-CCC--------------
Confidence 99999999999998888877777 5554 444444433 22 277888888 565
Q ss_pred ceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeEeeccceEEEeeeecccccccccccCeEEEEec
Q 000673 358 YENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSL 437 (1358)
Q Consensus 358 ~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~ 437 (1358)
+.|+++...|.+.+|++...+..-..+ .+.+.+..+...+++...++.+ .|.+ |++|+.
T Consensus 425 -~~Iv~G~k~Gel~vfdlaS~~l~Eti~---------AHdgaIWsi~~~pD~~g~vT~s-----aDkt------VkfWdf 483 (888)
T KOG0306|consen 425 -RYIVLGTKNGELQVFDLASASLVETIR---------AHDGAIWSISLSPDNKGFVTGS-----ADKT------VKFWDF 483 (888)
T ss_pred -ceEEEeccCCceEEEEeehhhhhhhhh---------ccccceeeeeecCCCCceEEec-----CCcE------EEEEeE
Confidence 278999999999999998743322222 3445667777888888777766 4555 899963
Q ss_pred CCCCCCCCcceeEEeecCccceeeeccccccCCCCcccccccccccCCccccccccCCCCCCCceeecccCCCcEEEEEe
Q 000673 438 SQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMV 517 (1358)
Q Consensus 438 ~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~ 517 (1358)
++... ..|. .. ++ ..+... ..-.-+..|.|+.+
T Consensus 484 -----------~l~~~--~~gt------------~~---k~-----------lsl~~~--------rtLel~ddvL~v~~ 516 (888)
T KOG0306|consen 484 -----------KLVVS--VPGT------------QK---KV-----------LSLKHT--------RTLELEDDVLCVSV 516 (888)
T ss_pred -----------EEEec--cCcc------------cc---ee-----------eeeccc--------eEEeccccEEEEEE
Confidence 12211 0000 00 00 000000 00112356888888
Q ss_pred eccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEE
Q 000673 518 ISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG 597 (1358)
Q Consensus 518 i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sg 597 (1358)
.+++.| ++.|--|.++.|+..+ +.+..-.|.||.-+|.|+..+ ||+ +.++||
T Consensus 517 Spdgk~----LaVsLLdnTVkVyflD---------------tlKFflsLYGHkLPV~smDIS-----~DS----klivTg 568 (888)
T KOG0306|consen 517 SPDGKL----LAVSLLDNTVKVYFLD---------------TLKFFLSLYGHKLPVLSMDIS-----PDS----KLIVTG 568 (888)
T ss_pred cCCCcE----EEEEeccCeEEEEEec---------------ceeeeeeecccccceeEEecc-----CCc----CeEEec
Confidence 888888 9999999999997655 556778899999999999998 788 999999
Q ss_pred eCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE
Q 000673 598 SMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 677 (1358)
Q Consensus 598 s~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~ 677 (1358)
|.|++|++|-++-|.|-++|.+|.+.|.++.|.|+ ...+.++|.|+.|+-||-++.++++.+.+|...|++++.
T Consensus 569 SADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~------~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav 642 (888)
T KOG0306|consen 569 SADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK------THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV 642 (888)
T ss_pred cCCCceEEeccccchhhhhhhcccCceeEEEEccc------ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE
Confidence 99999999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 678 DCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 678 spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
.|+|.|++++ +. |.+||+|....
T Consensus 643 ~~~G~~vvs~------sh--D~sIRlwE~td 665 (888)
T KOG0306|consen 643 SPNGSFVVSS------SH--DKSIRLWERTD 665 (888)
T ss_pred cCCCCeEEec------cC--CceeEeeeccC
Confidence 9999999943 33 48999998754
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.7e-26 Score=262.94 Aligned_cols=536 Identities=13% Similarity=0.080 Sum_probs=332.8
Q ss_pred CCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccC
Q 000673 13 TPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSS 92 (1358)
Q Consensus 13 ~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (1358)
+-|+|.+|...|||.|.++|+|...|+|+|||... .+......+.--+++|.+|++
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~---~~hiLKnef~v~aG~I~Di~W--------------------- 111 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQ---KEHILKNEFQVLAGPIKDISW--------------------- 111 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccC---cceeeeeeeeeccccccccee---------------------
Confidence 35789999999999999999999999999999983 334444555566788999955
Q ss_pred cccccccCCCCeEEEeeC----CCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcccccccc
Q 000673 93 NVMGKSSLDNGALISACT----DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSF 168 (1358)
Q Consensus 93 ~~~~~~s~d~~~L~S~s~----Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~ 168 (1358)
+.|+++++..++ -|.+-+||- |.-.-....| ..-..-+.+.++...+.+.|.
T Consensus 112 ------d~ds~RI~avGEGrerfg~~F~~DS--G~SvGei~Gh---Sr~ins~~~KpsRPfRi~T~s------------- 167 (603)
T KOG0318|consen 112 ------DFDSKRIAAVGEGRERFGHVFLWDS--GNSVGEITGH---SRRINSVDFKPSRPFRIATGS------------- 167 (603)
T ss_pred ------CCCCcEEEEEecCccceeEEEEecC--CCccceeecc---ceeEeeeeccCCCceEEEecc-------------
Confidence 677899998886 244556665 4433333333 111222333333334444443
Q ss_pred cccccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecc
Q 000673 169 ESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPIS 248 (1358)
Q Consensus 169 ~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l 248 (1358)
++..|.+++- ...+.-.+.+.|..-|.++-+.+ | +..+++.+.||.+-++|=
T Consensus 168 -------------------dDn~v~ffeG---PPFKFk~s~r~HskFV~~VRysP---D---G~~Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 168 -------------------DDNTVAFFEG---PPFKFKSSFREHSKFVNCVRYSP---D---GSRFATAGSDGKIYIYDG 219 (603)
T ss_pred -------------------CCCeEEEeeC---CCeeeeecccccccceeeEEECC---C---CCeEEEecCCccEEEEcC
Confidence 3555666542 21111112122445578777773 5 448999999999988885
Q ss_pred cCcccccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce--EEeecCCCcccceeeeeecceeeec
Q 000673 249 KESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEG 326 (1358)
Q Consensus 249 ~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~~~~~~~~~~l~~~~ 326 (1358)
++. +.+.+- .....|.+++.+++++||++++++++.|++ |||. .+.+++.++ .+ .
T Consensus 220 ktg-------e~vg~l-------~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV-s~~slv~t~------~~--~ 276 (603)
T KOG0318|consen 220 KTG-------EKVGEL-------EDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV-STNSLVSTW------PM--G 276 (603)
T ss_pred CCc-------cEEEEe-------cCCCCccccEEEEEECCCCceEEEecCCceEEEEEe-eccceEEEe------ec--C
Confidence 553 223322 124689999999999999999999999988 9998 455555555 11 1
Q ss_pred CCCCCceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeEe
Q 000673 327 GSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFI 406 (1358)
Q Consensus 327 ~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~ 406 (1358)
..-..-.+|..+. .| ++++-+.+|.+.+++.... ..+-...++...++++.-+
T Consensus 277 ~~v~dqqvG~lWq--kd----------------~lItVSl~G~in~ln~~d~---------~~~~~i~GHnK~ITaLtv~ 329 (603)
T KOG0318|consen 277 STVEDQQVGCLWQ--KD----------------HLITVSLSGTINYLNPSDP---------SVLKVISGHNKSITALTVS 329 (603)
T ss_pred CchhceEEEEEEe--CC----------------eEEEEEcCcEEEEecccCC---------ChhheecccccceeEEEEc
Confidence 1112234555555 44 6788888888888876652 1122234667778889999
Q ss_pred eccceEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeeccccccCCCCcccccccccccCCc
Q 000673 407 QMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDT 486 (1358)
Q Consensus 407 ~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~ 486 (1358)
+++++|++.+ .|+. |.-|+... +...++...+...- +..+...+. ..+.+...+.+
T Consensus 330 ~d~~~i~Sgs-----yDG~------I~~W~~~~-----g~~~~~~g~~h~nq------I~~~~~~~~--~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 330 PDGKTIYSGS-----YDGH------INSWDSGS-----GTSDRLAGKGHTNQ------IKGMAASES--GELFTIGWDDT 385 (603)
T ss_pred CCCCEEEeec-----cCce------EEEEecCC-----ccccccccccccce------EEEEeecCC--CcEEEEecCCe
Confidence 9999999876 4455 77786311 11222222221100 000000000 01233333444
Q ss_pred cccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEE
Q 000673 487 VPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF 566 (1358)
Q Consensus 487 i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l 566 (1358)
++.-+..++.-.......+. .++. ++++.++... ++..+. +.|.++. ...-..+.
T Consensus 386 l~~~~~~~~~~t~~~~~~lg--~QP~-~lav~~d~~~----avv~~~-~~iv~l~-----------------~~~~~~~~ 440 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLG--SQPK-GLAVLSDGGT----AVVACI-SDIVLLQ-----------------DQTKVSSI 440 (603)
T ss_pred EEEEecccCcccccceeecC--CCce-eEEEcCCCCE----EEEEec-CcEEEEe-----------------cCCcceee
Confidence 44433322211111111111 1111 2222222221 233322 2333311 00011111
Q ss_pred ecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcE--EEEEecCCCcEEEEEeCCCCCCCCCCCeEEE
Q 000673 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL--ITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1358)
Q Consensus 567 ~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~--l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S 644 (1358)
. -.-.+.+++++ |++ +.++.|++|+.|.++.+..+.+ ......|.++|++++|+|| +.+|++
T Consensus 441 ~-~~y~~s~vAv~-----~~~----~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd------~~yla~ 504 (603)
T KOG0318|consen 441 P-IGYESSAVAVS-----PDG----SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD------GAYLAA 504 (603)
T ss_pred c-cccccceEEEc-----CCC----CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCC------CcEEEE
Confidence 1 23457889998 788 9999999999999999986553 3456789999999999999 899999
Q ss_pred EeCCCcEEEEECCCCcEEEEec-CCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC-eEEEEEeCCCCce
Q 000673 645 VGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHS 722 (1358)
Q Consensus 645 ~s~D~tV~lwdl~~~~~~~~l~-gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg-~~~~~l~GH~~~v 722 (1358)
+...+.|.+||+.+++.....- -|...|.+++|+|+...+++|+.| ..|.||+++.. +.+.....|...|
T Consensus 505 ~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD--------t~Viiysv~kP~~~i~iknAH~~gV 576 (603)
T KOG0318|consen 505 GDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLD--------TNVIIYSVKKPAKHIIIKNAHLGGV 576 (603)
T ss_pred eccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecccc--------ceEEEEEccChhhheEeccccccCc
Confidence 9999999999999988743333 389999999999999999976554 79999999874 3344455788888
Q ss_pred EEEeeecccccceeecceecCcccccCCccccccCCcEEEEeC
Q 000673 723 MFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 723 ~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~ 765 (1358)
..+.|-++. .+++..+|..+|.|++
T Consensus 577 n~v~wlde~------------------tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 577 NSVAWLDES------------------TVVSSGQDANIKVWNV 601 (603)
T ss_pred eeEEEecCc------------------eEEeccCcceeEEecc
Confidence 877665432 2344456999999975
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=280.85 Aligned_cols=129 Identities=20% Similarity=0.276 Sum_probs=119.2
Q ss_pred cccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCC
Q 000673 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1358)
Q Consensus 555 ~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~ 634 (1358)
||+.+|.++..|.||...|.+++|+ |+| ..|+|||.|++++|||++..+.+.++.+|.+.|+.+.|+|+.
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fs-----PNG----y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~- 399 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFS-----PNG----YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE- 399 (459)
T ss_pred eecccCcEEEEecccccceeeEeEC-----CCc----eEEeecCCCCcEEEeeecccccceecccccchhhheEecccC-
Confidence 4566777788889999999999998 889 999999999999999999999999999999999999999953
Q ss_pred CCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEE
Q 000673 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1358)
Q Consensus 635 ~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd 705 (1358)
|.+|+|++.|+++++|..+++.+++.+.||.+.|.++..+|+++++++++. |+++++|.
T Consensus 400 ----g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~--------DRT~KLW~ 458 (459)
T KOG0272|consen 400 ----GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF--------DRTIKLWR 458 (459)
T ss_pred ----CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc--------Cceeeecc
Confidence 899999999999999999999999999999999999999999999996544 49999995
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.4e-29 Score=280.15 Aligned_cols=224 Identities=16% Similarity=0.211 Sum_probs=192.8
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
+++.+.++++++|+..+. .+...+.+|..+|..++|-+++.| |.+++.|.+-++ ||+
T Consensus 234 lat~s~Dgtvklw~~~~e----~~l~~l~gH~~RVs~VafHPsG~~----L~TasfD~tWRl---------------WD~ 290 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQE----TPLQDLEGHLARVSRVAFHPSGKF----LGTASFDSTWRL---------------WDL 290 (459)
T ss_pred eeeeccCCceeeeccCCC----cchhhhhcchhhheeeeecCCCce----eeecccccchhh---------------ccc
Confidence 455566777888887765 345667899999999996666666 999999998888 667
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCC
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~ 637 (1358)
.++..+....||...|.+++|+ ||| .+++|||.|..-||||+++|+++..|.+|..+|.+++|+|+
T Consensus 291 ~tk~ElL~QEGHs~~v~~iaf~-----~DG----SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN----- 356 (459)
T KOG0272|consen 291 ETKSELLLQEGHSKGVFSIAFQ-----PDG----SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN----- 356 (459)
T ss_pred ccchhhHhhcccccccceeEec-----CCC----ceeeccCccchhheeecccCcEEEEecccccceeeEeECCC-----
Confidence 7887778889999999999998 899 99999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 638 ~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~sp-d~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
|..++|||.|++++|||++..+++.++++|.+-|+.|+|+| .|.+|+++++ |++++||.-+++.+++++.
T Consensus 357 -Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy--------D~t~kiWs~~~~~~~ksLa 427 (459)
T KOG0272|consen 357 -GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY--------DNTVKIWSTRTWSPLKSLA 427 (459)
T ss_pred -ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc--------CcceeeecCCCcccchhhc
Confidence 99999999999999999999999999999999999999999 6777775433 3999999999999999999
Q ss_pred CCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEe
Q 000673 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 717 GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~ 764 (1358)
||.+.|+++...+ ++.+..+.+ -|+|+|.|.
T Consensus 428 GHe~kV~s~Dis~------------d~~~i~t~s-----~DRT~KLW~ 458 (459)
T KOG0272|consen 428 GHEGKVISLDISP------------DSQAIATSS-----FDRTIKLWR 458 (459)
T ss_pred CCccceEEEEecc------------CCceEEEec-----cCceeeecc
Confidence 9999998765443 223333333 399999994
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3e-25 Score=261.21 Aligned_cols=515 Identities=15% Similarity=0.104 Sum_probs=327.1
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCcccccccC
Q 000673 21 ATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSL 100 (1358)
Q Consensus 21 ava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 100 (1358)
-+.|++||..+++- -...|.++|+.. .+-.-.-+.+...|++++. ||
T Consensus 19 nl~ft~dG~sviSP-vGNrvsv~dLkn-----N~S~Tl~~e~~~NI~~ial---------------------------Sp 65 (893)
T KOG0291|consen 19 NLVFTKDGNSVISP-VGNRVSVFDLKN-----NKSYTLPLETRYNITRIAL---------------------------SP 65 (893)
T ss_pred cEEECCCCCEEEec-cCCEEEEEEccC-----CcceeEEeecCCceEEEEe---------------------------CC
Confidence 37899999999874 567899999995 2333345578899999954 89
Q ss_pred CCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcccccccccccccccccccc
Q 000673 101 DNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDK 180 (1358)
Q Consensus 101 d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~~~s~d~ 180 (1358)
+|.+|++..+.|..-+-++.....+++..+- .....|. ++++.+...++|.
T Consensus 66 ~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk---~~v~~i~-fSPng~~fav~~g------------------------- 116 (893)
T KOG0291|consen 66 DGTLLLAVDERGRALLVSLLSRSVLHRFNFK---RGVGAIK-FSPNGKFFAVGCG------------------------- 116 (893)
T ss_pred CceEEEEEcCCCcEEEEecccceeeEEEeec---CccceEE-ECCCCcEEEEEec-------------------------
Confidence 9999999999999999998776666665554 2222333 2333333333333
Q ss_pred cCCCCCCCCceEEEEeCC-Cce------EE-EEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCcc
Q 000673 181 EVPMKNPPKCTLVIVDTY-GLT------IV-QTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESH 252 (1358)
Q Consensus 181 ~~~~~~~~~~~I~i~D~~-tl~------v~-~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~ 252 (1358)
.-++||-.- ..+ ++ .+... +...|.++.++. |. .+++++|.|-++|+|.++..
T Consensus 117 ---------n~lqiw~~P~~~~~~~~pFvl~r~~~g---~fddi~si~Ws~---DS---r~l~~gsrD~s~rl~~v~~~- 177 (893)
T KOG0291|consen 117 ---------NLLQIWHAPGEIKNEFNPFVLHRTYLG---HFDDITSIDWSD---DS---RLLVTGSRDLSARLFGVDGN- 177 (893)
T ss_pred ---------ceeEEEecCcchhcccCcceEeeeecC---CccceeEEEecc---CC---ceEEeccccceEEEEEeccc-
Confidence 245565421 111 11 22233 455588999874 43 49999999999999999874
Q ss_pred cccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce--EEeecC-CCcccceee-eee--cceeeec
Q 000673 253 LDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLG-SGSTIGEIC-FVD--NLFCLEG 326 (1358)
Q Consensus 253 ~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~-~~~~~~~~~-~~~--~~l~~~~ 326 (1358)
+.-....+++|...|.+--|..+...+.+++.++. +|.+.. .....+.-+ .-+ ..--.+.
T Consensus 178 --------------k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~ 243 (893)
T KOG0291|consen 178 --------------KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDED 243 (893)
T ss_pred --------------cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccccc
Confidence 12233457888899888889999999999999998 555520 000000000 000 0000000
Q ss_pred CCC----CCceEE-EEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCce
Q 000673 327 GST----NSYVIG-AMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKF 401 (1358)
Q Consensus 327 ~~~----~~~~~g-~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 401 (1358)
... .....+ ..|+.... .+...+ .+-...+.++++=..|...||.+|.- ..|
T Consensus 244 ~Eek~~~~~~~k~~k~~ln~~~-~kvtaa--~fH~~t~~lvvgFssG~f~LyelP~f---------~li----------- 300 (893)
T KOG0291|consen 244 GEEKTHKIFWYKTKKHYLNQNS-SKVTAA--AFHKGTNLLVVGFSSGEFGLYELPDF---------NLI----------- 300 (893)
T ss_pred chhhhcceEEEEEEeeeecccc-cceeee--eccCCceEEEEEecCCeeEEEecCCc---------eEE-----------
Confidence 000 000000 11220000 000000 01112234556666677777777751 000
Q ss_pred eEeEeeccceEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeeccccccCCCCccccccccc
Q 000673 402 SIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLT 481 (1358)
Q Consensus 402 ~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t 481 (1358)
+.++++ +.+. .-..|+ ..|+|..- .+
T Consensus 301 ---------h~LSis------~~~I----~t~~~N-------------------~tGDWiA~----------------g~ 326 (893)
T KOG0291|consen 301 ---------HSLSIS------DQKI----LTVSFN-------------------STGDWIAF----------------GC 326 (893)
T ss_pred ---------EEeecc------ccee----eEEEec-------------------ccCCEEEE----------------cC
Confidence 111111 0000 001111 01222211 00
Q ss_pred ccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCce
Q 000673 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1358)
Q Consensus 482 ~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~ 561 (1358)
...+.+-+|+.... .-+....+|-..++++.|.+++.+ +++|++||.|+| ||..++-
T Consensus 327 ~klgQLlVweWqsE----sYVlKQQgH~~~i~~l~YSpDgq~----iaTG~eDgKVKv---------------Wn~~Sgf 383 (893)
T KOG0291|consen 327 SKLGQLLVWEWQSE----SYVLKQQGHSDRITSLAYSPDGQL----IATGAEDGKVKV---------------WNTQSGF 383 (893)
T ss_pred CccceEEEEEeecc----ceeeeccccccceeeEEECCCCcE----EEeccCCCcEEE---------------EeccCce
Confidence 11122333443221 122334689999999997777776 999999999999 5577888
Q ss_pred EEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCC-CcEEEEEeCCCCCCCCCCC
Q 000673 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSD 640 (1358)
Q Consensus 562 ~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~-~~V~~l~~spd~~~~~~g~ 640 (1358)
|..+|..|+..|+.+.|+ .+| +.++|.|.|||||.||+...+..++|.... -...|++..|. |.
T Consensus 384 C~vTFteHts~Vt~v~f~-----~~g----~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s------Ge 448 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFT-----ARG----NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS------GE 448 (893)
T ss_pred EEEEeccCCCceEEEEEE-----ecC----CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC------CC
Confidence 999999999999999998 667 999999999999999999999999998743 24567888887 89
Q ss_pred eEEEEeCCC-cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC-eEEEEEeCC
Q 000673 641 CFLSVGEDF-SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGT 718 (1358)
Q Consensus 641 ~l~S~s~D~-tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg-~~~~~l~GH 718 (1358)
.++.|+.|. .|.+|++++|+.+..+.||.++|.+++|+|++..|+++ | .|.+||+||+-.. ..+.++. +
T Consensus 449 lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~------S--WDkTVRiW~if~s~~~vEtl~-i 519 (893)
T KOG0291|consen 449 LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASG------S--WDKTVRIWDIFSSSGTVETLE-I 519 (893)
T ss_pred EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEec------c--ccceEEEEEeeccCceeeeEe-e
Confidence 999999886 58999999999999999999999999999999999943 3 3499999998543 2233333 4
Q ss_pred CCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCcccc
Q 000673 719 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERG 771 (1358)
Q Consensus 719 ~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~~~ 771 (1358)
...++.+.|.++...-.+. .+ ||.+-+|+.++..+.
T Consensus 520 ~sdvl~vsfrPdG~elaVa------------Tl-----dgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 520 RSDVLAVSFRPDGKELAVA------------TL-----DGQITFFDIKEAVQV 555 (893)
T ss_pred ccceeEEEEcCCCCeEEEE------------Ee-----cceEEEEEhhhceee
Confidence 5577777777643322222 22 899999998776554
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.1e-25 Score=264.78 Aligned_cols=495 Identities=16% Similarity=0.138 Sum_probs=312.0
Q ss_pred CcceeEEEEeCCCCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCC---CCccceeEeeeCcCcCEEEeeecccccc
Q 000673 1 MKCRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSS---YSEIKPVAMLCGHSAPIADLSICYPAMV 77 (1358)
Q Consensus 1 ~~~~~~~~lw~~~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~---~~~~~~~~~L~GH~~~Vt~l~~~~~~~~ 77 (1358)
|+||+|.--.. ....|.||.|||||+++|.|. ..-+.+|..-.+- -.......+..||...|++|.+
T Consensus 84 ~~~r~Vlh~f~---fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~W------ 153 (893)
T KOG0291|consen 84 LLSRSVLHRFN---FKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDW------ 153 (893)
T ss_pred cccceeeEEEe---ecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEe------
Confidence 34555543222 234589999999999999885 4678899986311 0123456678899999999955
Q ss_pred ccCcccccccccccCcccccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCC---------
Q 000673 78 SRDGKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPR--------- 148 (1358)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~--------- 148 (1358)
+.|.++|+++|.|-+.|||++..-+-.....+..+ ..+..-+.+..+..
T Consensus 154 ---------------------s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gH-kd~VvacfF~~~~~~l~tvskdG 211 (893)
T KOG0291|consen 154 ---------------------SDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGH-KDYVVACFFGANSLDLYTVSKDG 211 (893)
T ss_pred ---------------------ccCCceEEeccccceEEEEEeccccccceEeccCC-CcceEEEEeccCcceEEEEecCc
Confidence 67789999999999999999986554333333211 11111112221110
Q ss_pred ceEEEEeeccCCcccccccccccccccc------cccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEe
Q 000673 149 YVCIGCCFIDTNQLSDHHSFESVEGDLV------SEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVV 222 (1358)
Q Consensus 149 ~~~l~c~~~~~~~~~~~~~~~~~~g~~~------s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~ 222 (1358)
..++.-+.. .+.+.... +.|.+..-..-++..=.+|- +.-...+. .....+++..|.
T Consensus 212 ~l~~W~~~~-----------~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~----k~~k~~ln--~~~~kvtaa~fH 274 (893)
T KOG0291|consen 212 ALFVWTCDL-----------RPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY----KTKKHYLN--QNSSKVTAAAFH 274 (893)
T ss_pred eEEEEEecC-----------CCcccccccccccccccccccccchhhhcceEEE----EEEeeeec--ccccceeeeecc
Confidence 111111110 01111100 11111110000000000110 00011111 001236666665
Q ss_pred ecCCCCCcceEEEEecCCcEEEEecccCcccccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCc-e
Q 000673 223 SLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDH-C 301 (1358)
Q Consensus 223 ~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~-~ 301 (1358)
.. -.+|+++=.+|...++.+++- ..+.++...+..+..+++...|..+++.+..- .
T Consensus 275 ~~------t~~lvvgFssG~f~LyelP~f-----------------~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQ 331 (893)
T KOG0291|consen 275 KG------TNLLVVGFSSGEFGLYELPDF-----------------NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQ 331 (893)
T ss_pred CC------ceEEEEEecCCeeEEEecCCc-----------------eEEEEeecccceeeEEEecccCCEEEEcCCccce
Confidence 32 347777778898888888864 25556666667789999999999999887652 2
Q ss_pred --EEeecCCCcccceeeeeecceeeecCCCCCceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCC
Q 000673 302 --IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMN 379 (1358)
Q Consensus 302 --i~d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~ 379 (1358)
+|.+ .++. .++...++. .......+.+++. .++.+.+||++++|+...+
T Consensus 332 LlVweW-qsEs---------YVlKQQgH~--~~i~~l~YSpDgq----------------~iaTG~eDgKVKvWn~~Sg- 382 (893)
T KOG0291|consen 332 LLVWEW-QSES---------YVLKQQGHS--DRITSLAYSPDGQ----------------LIATGAEDGKVKVWNTQSG- 382 (893)
T ss_pred EEEEEe-eccc---------eeeeccccc--cceeeEEECCCCc----------------EEEeccCCCcEEEEeccCc-
Confidence 6665 2221 122222222 2333333433333 7889999999999998764
Q ss_pred ccccCCCccccCCccCCCCCceeEeEeeccceEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccce
Q 000673 380 EKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVD 459 (1358)
Q Consensus 380 ~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~ 459 (1358)
.|+.+...|...++.+.|.+.+..+++.+ -|++ |+.|++..- +.-+.+
T Consensus 383 --------fC~vTFteHts~Vt~v~f~~~g~~llssS-----LDGt------VRAwDlkRY-----rNfRTf-------- 430 (893)
T KOG0291|consen 383 --------FCFVTFTEHTSGVTAVQFTARGNVLLSSS-----LDGT------VRAWDLKRY-----RNFRTF-------- 430 (893)
T ss_pred --------eEEEEeccCCCceEEEEEEecCCEEEEee-----cCCe------EEeeeeccc-----ceeeee--------
Confidence 78888888889999999999999888776 5566 999964211 011111
Q ss_pred eeeccccccCCCCcccccccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCC-cEE
Q 000673 460 WVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSG-EIE 538 (1358)
Q Consensus 460 w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG-~I~ 538 (1358)
..| ....-.|+++.+++.. ++.|..|. .|+
T Consensus 431 -t~P--------------------------------------------~p~QfscvavD~sGel----V~AG~~d~F~If 461 (893)
T KOG0291|consen 431 -TSP--------------------------------------------EPIQFSCVAVDPSGEL----VCAGAQDSFEIF 461 (893)
T ss_pred -cCC--------------------------------------------CceeeeEEEEcCCCCE----EEeeccceEEEE
Confidence 111 0112233333333432 34444442 566
Q ss_pred EEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcE-EEEE
Q 000673 539 VIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL-ITVM 617 (1358)
Q Consensus 539 i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~-l~~~ 617 (1358)
+ |++++|+.+..|.||.++|.+|+|+ |+| +.|+|||+|+|||+||+..... ..++
T Consensus 462 v---------------WS~qTGqllDiLsGHEgPVs~l~f~-----~~~----~~LaS~SWDkTVRiW~if~s~~~vEtl 517 (893)
T KOG0291|consen 462 V---------------WSVQTGQLLDILSGHEGPVSGLSFS-----PDG----SLLASGSWDKTVRIWDIFSSSGTVETL 517 (893)
T ss_pred E---------------EEeecCeeeehhcCCCCcceeeEEc-----ccc----CeEEeccccceEEEEEeeccCceeeeE
Confidence 6 5588999999999999999999998 777 8999999999999999976533 3334
Q ss_pred ecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecC--------------------CCCCcEEEEE
Q 000673 618 HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG--------------------HPNYPAKVVW 677 (1358)
Q Consensus 618 ~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~g--------------------H~~~V~~v~~ 677 (1358)
.+...|..+.|+|+ |+-+|.+..||.|.+||.+.+..+..+.| .....+.+++
T Consensus 518 -~i~sdvl~vsfrPd------G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~y 590 (893)
T KOG0291|consen 518 -EIRSDVLAVSFRPD------GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICY 590 (893)
T ss_pred -eeccceeEEEEcCC------CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEE
Confidence 45677999999999 89999999999999999987654433321 2246789999
Q ss_pred cCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 678 DCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 678 spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
++||.+++.|+.. +.|.+||++++-+++.++
T Consensus 591 SaDG~~IlAgG~s--------n~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 591 SADGKCILAGGES--------NSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred cCCCCEEEecCCc--------ccEEEEECchhheeeeEE
Confidence 9999999965433 799999999999999886
No 12
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.6e-26 Score=264.80 Aligned_cols=599 Identities=13% Similarity=0.124 Sum_probs=344.7
Q ss_pred EEEEeCCCCCC---------ceeEEEEEecCCCEEEEE--eCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccc
Q 000673 6 VACIWSGTPPS---------HRVTATSALTQPPTLYTG--GSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYP 74 (1358)
Q Consensus 6 ~~~lw~~~~p~---------h~Vtava~Spdg~~LaTG--s~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~ 74 (1358)
|+||+...-++ -.+||+|||++|+++||| +....+++|+++. ...++.|..|+..|+|++|.+.
T Consensus 59 vVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~-----h~vVAEfvdHKY~vtcvaFsp~ 133 (1080)
T KOG1408|consen 59 VVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAF-----HGVVAEFVDHKYNVTCVAFSPG 133 (1080)
T ss_pred EEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecc-----ccchhhhhhccccceeeeecCC
Confidence 56666554332 249999999999999998 4788899999996 4567889999999999999655
Q ss_pred c---c-ccc--Ccccccccccc---------cCcccccc-cCCCCeEEEeeCCCeEEEEECCCCceEE-EeeCCCCCCCC
Q 000673 75 A---M-VSR--DGKAEHWKAEN---------SSNVMGKS-SLDNGALISACTDGVLCVWSRSSGHCRR-RRKLPPWVGSP 137 (1358)
Q Consensus 75 ~---~-~~~--~~~~~~~~~~~---------~~~~~~~~-s~d~~~L~S~s~Dg~l~lWdl~~G~c~~-~~~l~~~~~~~ 137 (1358)
. + +.. |=-+-.|++.. ++-|.-+. +.||.|++|++ +.-|++|.++.++-.. .+.++ +..
T Consensus 134 ~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~---gRs 209 (1080)
T KOG1408|consen 134 NKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLP---GRS 209 (1080)
T ss_pred CcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCcccc---chh
Confidence 2 1 111 22245555542 33333334 89999999988 6789999999776110 11111 100
Q ss_pred ceeeeeCCCCCceEEEEeeccCCcccccccccccccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCC--
Q 000673 138 SVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGP-- 215 (1358)
Q Consensus 138 s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~p-- 215 (1358)
-..-.+..+ ....+.|. .+.....+..|-- .-.+..+.+.+|-...
T Consensus 210 ~~lg~lr~n-~f~avaCg----------------------------~gicAestfait~---qGhLvEFSsRRLLDKWVq 257 (1080)
T KOG1408|consen 210 YFLGNLRFN-EFLAVACG----------------------------VGICAESTFAITA---QGHLVEFSSRRLLDKWVQ 257 (1080)
T ss_pred hhccccccc-hhhhhhhc----------------------------CcccccceEEEec---ccceeeechhhhhhhhhh
Confidence 000000000 00111111 1111112222211 1122223332222111
Q ss_pred -----cceEEEeecCCCCCcceEEEEecCCcEEEEecccCcccccccCCccee-----cCCc--ccceEeccCcccCceE
Q 000673 216 -----WKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCK-----SSSQ--LDMAILQNGVVEGGHL 283 (1358)
Q Consensus 216 -----i~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~~~~~~~~l~e-----~~~~--~~~~~~~~~~~~~v~~ 283 (1358)
-.|++|. .+.|+.++.+|++++++..+-...+....+-+. ..++ -+.....+.......+
T Consensus 258 cRTTnAnCIcVs--------~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA 329 (1080)
T KOG1408|consen 258 CRTTNANCICVS--------SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIA 329 (1080)
T ss_pred hhccccceeeee--------cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeE
Confidence 4567776 349999999999999987765332222211110 0001 0111111222223467
Q ss_pred EEEecCCcEEEEEecCce--EEeecCCCccccee-eeeecceeeecCCCCCceEEEEeecccchhccccccccccccceE
Q 000673 284 VSVATCGNIIALVLKDHC--IFRLLGSGSTIGEI-CFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYEN 360 (1358)
Q Consensus 284 vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~ 360 (1358)
+.|.+..+.+.++..+++ +||+-+- .++|+. +++... ..+.+...++. .++....+|-+ .+.
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~-~kvgk~~s~lyHS---------~ciW~Ve~~p~----nv~~~~~aclp-~~c 394 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDV-NKVGKCSSMLYHS---------ACIWDVENLPC----NVHSPTAACLP-RGC 394 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEecccc-ccccceeeeeecc---------ceeeeeccccc----cccCcccccCC-ccc
Confidence 778899999999999998 8888222 222322 121111 22222222210 11111122222 336
Q ss_pred EEEEecCCcEEEEEEccC--CccccCCCccccCCccCCCCCceeEeEeeccc-eEEEeeeecccccccccccCeEEEEec
Q 000673 361 FAVWDNRGSAIVYAISYM--NEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSL-YLLRMETVCFHVEETSQWRPYISVWSL 437 (1358)
Q Consensus 361 v~vws~dG~~~l~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~-~L~~v~s~~~~~~~~~~~~p~v~vws~ 437 (1358)
|.+.+.||++++|++... +..++...+. .+-..+.|..... ++.-.+..-|+.+....|++.+-+-.+
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils---------~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~ 465 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILS---------ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRAL 465 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccch---------hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEE
Confidence 899999999999999752 1111111100 0000111111111 111111111222222222222111010
Q ss_pred CCCCCCCCcceeEEeecCccceeeeccccccCCCCcccccccccccCCccccccccCCCCCCCceeecccCCCcEEEEEe
Q 000673 438 SQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMV 517 (1358)
Q Consensus 438 ~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~ 517 (1358)
+- .+..+.|++|+. .+.+++.++.+. .....+..|...|-|+.|
T Consensus 466 ~v-----Sp~gqhLAsGDr---------------------------~GnlrVy~Lq~l----~~~~~~eAHesEilcLey 509 (1080)
T KOG1408|consen 466 AV-----SPDGQHLASGDR---------------------------GGNLRVYDLQEL----EYTCFMEAHESEILCLEY 509 (1080)
T ss_pred EE-----CCCcceecccCc---------------------------cCceEEEEehhh----hhhhheecccceeEEEee
Confidence 00 012234444443 444555555432 122334668888888764
Q ss_pred eccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEE
Q 000673 518 ISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG 597 (1358)
Q Consensus 518 i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sg 597 (1358)
.-...- -..|++|+.|.-|.|++.. +.-.++++|.+|...|+++.|. .+| .+..++|+
T Consensus 510 S~p~~~-~kLLASasrdRlIHV~Dv~--------------rny~l~qtld~HSssITsvKFa-----~~g--ln~~Misc 567 (1080)
T KOG1408|consen 510 SFPVLT-NKLLASASRDRLIHVYDVK--------------RNYDLVQTLDGHSSSITSVKFA-----CNG--LNRKMISC 567 (1080)
T ss_pred cCchhh-hHhhhhccCCceEEEEecc--------------cccchhhhhcccccceeEEEEe-----ecC--CceEEEec
Confidence 322110 0128999999999995532 1223678999999999999996 333 34689999
Q ss_pred eCCCcEEEEeCCCCcEEEEEecC-----CCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecC---CC
Q 000673 598 SMDCSIRIWDLGSGNLITVMHHH-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG---HP 669 (1358)
Q Consensus 598 s~D~tI~lWDl~sg~~l~~~~~H-----~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~g---H~ 669 (1358)
+.|+.|.+--.....--..|..| ...+..+++.|. .+++++++.|+.|+++|+++|+..+.|+| |.
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e 641 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE 641 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCC------cceEEEEecccceEEEeccccceeeeecccccCC
Confidence 99999875443322222333333 245788888888 78999999999999999999999999975 66
Q ss_pred CCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecceecCcccccC
Q 000673 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSS 749 (1358)
Q Consensus 670 ~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~ 749 (1358)
+....+...|.|.|+++.|.| .++.++|+.+|+++..+.||...|+.+.|.++. .
T Consensus 642 G~lIKv~lDPSgiY~atScsd--------ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC-----------------k 696 (1080)
T KOG1408|consen 642 GDLIKVILDPSGIYLATSCSD--------KTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC-----------------K 696 (1080)
T ss_pred CceEEEEECCCccEEEEeecC--------CceEEEEeccchhhhhhcCcchheeeeeecccc-----------------h
Confidence 778899999999999976543 899999999999999999999999998887532 2
Q ss_pred CccccccCCcEEEEeCC
Q 000673 750 LLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 750 ~l~~~~~D~tvr~W~~~ 766 (1358)
++++++.|+-|-+|.+.
T Consensus 697 HlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hheeecCCceEEEEECc
Confidence 55667779999999874
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=4.6e-25 Score=251.32 Aligned_cols=406 Identities=17% Similarity=0.156 Sum_probs=273.6
Q ss_pred CceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeee---CcCcCEEEeeeccccccccCcccccccccccC
Q 000673 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLC---GHSAPIADLSICYPAMVSRDGKAEHWKAENSS 92 (1358)
Q Consensus 16 ~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~---GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (1358)
+.-|.|+.|+|||.++||.+.||+|.++|=.+ .+.+..|. +|++.|.+|++
T Consensus 190 skFV~~VRysPDG~~Fat~gsDgki~iyDGkt-----ge~vg~l~~~~aHkGsIfalsW--------------------- 243 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT-----GEKVGELEDSDAHKGSIFALSW--------------------- 243 (603)
T ss_pred ccceeeEEECCCCCeEEEecCCccEEEEcCCC-----ccEEEEecCCCCccccEEEEEE---------------------
Confidence 34499999999999999999999999999997 56677777 99999999955
Q ss_pred cccccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcccccccccccc
Q 000673 93 NVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVE 172 (1358)
Q Consensus 93 ~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~ 172 (1358)
+||++.++|+|.|.++||||+.+.+|+++..+. ..-....++|.-. .
T Consensus 244 ------sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~-------------~~v~dqqvG~lWq-k------------- 290 (603)
T KOG0318|consen 244 ------SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG-------------STVEDQQVGCLWQ-K------------- 290 (603)
T ss_pred ------CCCCceEEEecCCceEEEEEeeccceEEEeecC-------------CchhceEEEEEEe-C-------------
Confidence 899999999999999999999999998877654 1112456777651 1
Q ss_pred cccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCcc
Q 000673 173 GDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESH 252 (1358)
Q Consensus 173 g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~ 252 (1358)
+..++. .-.+.|..+++...++++.+.. |..+|+++++.. | +..|.+++.||.+.-|+.....
T Consensus 291 d~lItV--------Sl~G~in~ln~~d~~~~~~i~G---HnK~ITaLtv~~---d---~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 291 DHLITV--------SLSGTINYLNPSDPSVLKVISG---HNKSITALTVSP---D---GKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred CeEEEE--------EcCcEEEEecccCCChhheecc---cccceeEEEEcC---C---CCEEEeeccCceEEEEecCCcc
Confidence 111111 2568999999999999999999 889999999985 3 4599999999999999998752
Q ss_pred cccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCceEE--eecCCCcccceeeeeecceeeecCCCC
Q 000673 253 LDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIF--RLLGSGSTIGEICFVDNLFCLEGGSTN 330 (1358)
Q Consensus 253 ~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~i~--d~l~~~~~~~~~~~~~~~l~~~~~~~~ 330 (1358)
.. ++ ...+|...+..++.+..+ .+.+++.|..++ ++-.++ + .
T Consensus 354 ~~-----~~-----------~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~-----~-------------t- 397 (603)
T KOG0318|consen 354 SD-----RL-----------AGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNG-----Y-------------T- 397 (603)
T ss_pred cc-----cc-----------ccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCc-----c-------------c-
Confidence 10 11 123455555666654434 344555554432 220000 0 0
Q ss_pred CceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeEeeccc
Q 000673 331 SYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSL 410 (1358)
Q Consensus 331 ~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~ 410 (1358)
.. .+.++..+ |. .++-..++.
T Consensus 398 -----------~~---------------------------~~~~lg~Q------------P~---------~lav~~d~~ 418 (603)
T KOG0318|consen 398 -----------KS---------------------------EVVKLGSQ------------PK---------GLAVLSDGG 418 (603)
T ss_pred -----------cc---------------------------ceeecCCC------------ce---------eEEEcCCCC
Confidence 00 00000000 00 000000000
Q ss_pred eEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeeccccccCCCCcccccccccccCCccccc
Q 000673 411 YLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRS 490 (1358)
Q Consensus 411 ~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W 490 (1358)
.++-+ | ...+.+. ++. .+....+
T Consensus 419 ~avv~---~---------~~~iv~l-----------------~~~-~~~~~~~--------------------------- 441 (603)
T KOG0318|consen 419 TAVVA---C---------ISDIVLL-----------------QDQ-TKVSSIP--------------------------- 441 (603)
T ss_pred EEEEE---e---------cCcEEEE-----------------ecC-Ccceeec---------------------------
Confidence 10000 0 0001111 100 0000000
Q ss_pred cccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCC
Q 000673 491 EHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT 570 (1358)
Q Consensus 491 ~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~ 570 (1358)
-.-..+++++.++..+ .+.|++||.+.++...- . .......+..|.
T Consensus 442 -----------------~~y~~s~vAv~~~~~~----vaVGG~Dgkvhvysl~g--~-----------~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 442 -----------------IGYESSAVAVSPDGSE----VAVGGQDGKVHVYSLSG--D-----------ELKEEAKLLEHR 487 (603)
T ss_pred -----------------cccccceEEEcCCCCE----EEEecccceEEEEEecC--C-----------cccceeeeeccc
Confidence 0012334454555555 89999999999966541 1 112344567899
Q ss_pred CCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEE-EecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCC
Q 000673 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1358)
Q Consensus 571 ~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~-~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~ 649 (1358)
++|++++|+ ||+ .+|++|...+.|.+||+.+.+.... +.-|+..|+|++|+|+ ...+|+|+.|.
T Consensus 488 a~iT~vayS-----pd~----~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~------n~~vATGSlDt 552 (603)
T KOG0318|consen 488 AAITDVAYS-----PDG----AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN------NKLVATGSLDT 552 (603)
T ss_pred CCceEEEEC-----CCC----cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC------ceEEEeccccc
Confidence 999999998 899 9999999999999999998887433 4459999999999999 78999999999
Q ss_pred cEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 650 SVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 650 tV~lwdl~~~-~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
.|.+|+++.. +.+.....|...|+.+.|- +...+++ ++.|..|++|++.
T Consensus 553 ~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvS--------sG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 553 NVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVS--------SGQDANIKVWNVT 602 (603)
T ss_pred eEEEEEccChhhheEeccccccCceeEEEe-cCceEEe--------ccCcceeEEeccc
Confidence 9999999864 3355556798889999997 4566663 3335899999874
No 14
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=4.1e-24 Score=254.61 Aligned_cols=552 Identities=16% Similarity=0.144 Sum_probs=347.2
Q ss_pred EEeCCCCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCccccccc
Q 000673 8 CIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWK 87 (1358)
Q Consensus 8 ~lw~~~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~ 87 (1358)
.|.-..|.+..|+|++-. ..+.+++ +...|.+|... ..-.++..+|.+.|.-+
T Consensus 68 ll~vs~~lp~~I~alas~--~~~vy~A-~g~~i~~~~rg------k~i~~~~~~~~a~v~~l------------------ 120 (910)
T KOG1539|consen 68 LLFVSKPLPDKITALASD--KDYVYVA-SGNKIYAYARG------KHIRHTTLLHGAKVHLL------------------ 120 (910)
T ss_pred EEEecCCCCCceEEEEec--CceEEEe-cCcEEEEEEcc------ceEEEEeccccceEEEE------------------
Confidence 344457778889998884 4444444 34578888776 24567788898888777
Q ss_pred ccccCcccccccCCCCeEEEeeCCCeEEEEECCCCceE-----EEeeCCCCCCC-CceeeeeCCCCCceEEEEeeccCCc
Q 000673 88 AENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCR-----RRRKLPPWVGS-PSVICTLPSNPRYVCIGCCFIDTNQ 161 (1358)
Q Consensus 88 ~~~~~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~-----~~~~l~~~~~~-~s~i~~~~~~~~~~~l~c~~~~~~~ 161 (1358)
-+-|..++++..++.|.||+..+++.- ...+.. +. ++.+.+.+..-+...++.
T Consensus 121 -----------~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~---~~~Ital~HP~TYLNKIvvGs------- 179 (910)
T KOG1539|consen 121 -----------LPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVE---GDFITALLHPSTYLNKIVVGS------- 179 (910)
T ss_pred -----------eeecceEEEEEccCcEEEEEeccccccccccceeeecc---CCceeeEecchhheeeEEEee-------
Confidence 234788999999999999999885211 111111 11 333333333223333322
Q ss_pred ccccccccccccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCc
Q 000673 162 LSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGR 241 (1358)
Q Consensus 162 ~~~~~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg 241 (1358)
..+.+++||..++++++++.. ....|+++.=. ..-|+++.|..+|
T Consensus 180 --------------------------~~G~lql~Nvrt~K~v~~f~~---~~s~IT~ieqs------PaLDVVaiG~~~G 224 (910)
T KOG1539|consen 180 --------------------------SQGRLQLWNVRTGKVVYTFQE---FFSRITAIEQS------PALDVVAIGLENG 224 (910)
T ss_pred --------------------------cCCcEEEEEeccCcEEEEecc---cccceeEeccC------CcceEEEEeccCc
Confidence 458899999999999999988 66667665433 2378999999999
Q ss_pred EEEEecccCcccccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecC-ce--EEeecCCCcccceeeee
Q 000673 242 LQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKD-HC--IFRLLGSGSTIGEICFV 318 (1358)
Q Consensus 242 ~vkvW~l~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~-~~--i~d~l~~~~~~~~~~~~ 318 (1358)
.+.+.+++.. +.+.....-.+.|..++|..||..++..++. +. +||+ +..+++...
T Consensus 225 ~ViifNlK~d-----------------kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDL-e~kkl~~v~--- 283 (910)
T KOG1539|consen 225 TVIIFNLKFD-----------------KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDL-EKKKLINVT--- 283 (910)
T ss_pred eEEEEEcccC-----------------cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEc-CCCeeeeee---
Confidence 9999999873 1222222224788999999999987777666 44 7776 555444333
Q ss_pred ecceeeecCCCCCceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccC----CCccccCCcc
Q 000673 319 DNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDY----EPHFEIPAVS 394 (1358)
Q Consensus 319 ~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~----~~~~~i~~~~ 394 (1358)
.+ .....+.+..|+ .+.. -++....|.+.++|-+..++...+. .+|..-|.
T Consensus 284 ---~n----ah~~sv~~~~fl-~~ep---------------Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~-- 338 (910)
T KOG1539|consen 284 ---RN----AHYGSVTGATFL-PGEP---------------VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS-- 338 (910)
T ss_pred ---ec----cccCCcccceec-CCCc---------------eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch--
Confidence 21 112344556677 4441 3444455666666666543221111 22333333
Q ss_pred CCCCCceeEeEe-eccceEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEee------cCccc-----eeee
Q 000673 395 YPSGVKFSIHFI-QMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGE------GFSFV-----DWVN 462 (1358)
Q Consensus 395 ~~~~~~~~~~f~-~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~------g~~~g-----~w~~ 462 (1358)
.+.|- ..+.++.+.. .+.+ .+.+++.... +.+-+.+ +..-| ....
T Consensus 339 -------~irfy~~~g~~ilsa~-----~Drt------~r~fs~~~e~-----~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 339 -------CIRFYGSQGHFILSAK-----QDRT------LRSFSVISES-----QSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred -------heeeeccCcEEEEecc-----cCcc------hhhhhhhHHH-----HhHhhcccccccccccccccchhhhcC
Confidence 33333 4445555543 1221 2222211100 0000000 00000 0111
Q ss_pred ccccccCCCC--ccccc--ccccccCCccccccccCCCCCC--CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCc
Q 000673 463 NSTFLDENEG--SCTGK--SDLTFCQDTVPRSEHVDSRQAG--DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGE 536 (1358)
Q Consensus 463 ~~~~~~~~~g--~~i~~--l~~t~~~s~i~~W~~~~~~~~~--~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~ 536 (1358)
+++....... ..-|. +..-........|+..+...-. -....++.....++++++...+.| .+.|+..|.
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF----~~IG~S~G~ 471 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNF----VFIGYSKGT 471 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCce----EEEeccCCe
Confidence 1111111000 00011 1112223344556655432211 011112334578899998888888 999999999
Q ss_pred EEEEEecCcccCCCCCCccccCCceEEEEE---ecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcE
Q 000673 537 IEVIQFDLFERHNSPGASLKVNSHVSRQYF---LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL 613 (1358)
Q Consensus 537 I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l---~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~ 613 (1358)
|.+. ++++|.....| ..|.++|+.|+.. + .++.++|++.||-+++||.....+
T Consensus 472 Id~f---------------NmQSGi~r~sf~~~~ah~~~V~gla~D-------~--~n~~~vsa~~~Gilkfw~f~~k~l 527 (910)
T KOG1539|consen 472 IDRF---------------NMQSGIHRKSFGDSPAHKGEVTGLAVD-------G--TNRLLVSAGADGILKFWDFKKKVL 527 (910)
T ss_pred EEEE---------------EcccCeeecccccCccccCceeEEEec-------C--CCceEEEccCcceEEEEecCCcce
Confidence 9993 36677777777 5899999999973 2 347899999999999999998888
Q ss_pred EEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCcc
Q 000673 614 ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSR 693 (1358)
Q Consensus 614 l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sg 693 (1358)
+..+.. ...+.++..+.. ...++.+..|-.|+++|..+.+.++.|.||.+.|++++|+|||++|++++.
T Consensus 528 ~~~l~l-~~~~~~iv~hr~------s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm---- 596 (910)
T KOG1539|consen 528 KKSLRL-GSSITGIVYHRV------SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM---- 596 (910)
T ss_pred eeeecc-CCCcceeeeeeh------hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec----
Confidence 887764 356777877766 688999999999999999999999999999999999999999999996544
Q ss_pred ccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccC-CcEEEEeCCCccccc
Q 000673 694 TSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHED-GTFRQSQIQNDERGV 772 (1358)
Q Consensus 694 ssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D-~tvr~W~~~~~~~~~ 772 (1358)
|++||+||+.||.++..+.-.. ..+.+.|++ +|+++.+.+. | .-+..|--+.+-+.+
T Consensus 597 ----D~tIr~wDlpt~~lID~~~vd~-~~~sls~SP------------ngD~LAT~Hv-----d~~gIylWsNkslF~~v 654 (910)
T KOG1539|consen 597 ----DSTIRTWDLPTGTLIDGLLVDS-PCTSLSFSP------------NGDFLATVHV-----DQNGIYLWSNKSLFKSV 654 (910)
T ss_pred ----CCcEEEEeccCcceeeeEecCC-cceeeEECC------------CCCEEEEEEe-----cCceEEEEEchhHheec
Confidence 5999999999999998876443 444454553 5566665554 6 568899655444333
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=3.1e-26 Score=273.33 Aligned_cols=210 Identities=17% Similarity=0.263 Sum_probs=188.5
Q ss_pred ceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEec
Q 000673 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1358)
Q Consensus 501 ~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp 580 (1358)
....+.+|+++|....|.++..| |+++++|+++++|. +.+..+...++||..+|+++.|+
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rf----LlScSED~svRLWs---------------l~t~s~~V~y~GH~~PVwdV~F~- 502 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRF----LLSCSEDSSVRLWS---------------LDTWSCLVIYKGHLAPVWDVQFA- 502 (707)
T ss_pred eeEEeecCCCceeeeeecccccc----eeeccCCcceeeee---------------cccceeEEEecCCCcceeeEEec-
Confidence 44557899999999998888888 99999999999944 55777899999999999999998
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc
Q 000673 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1358)
Q Consensus 581 ~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~ 660 (1358)
|.| -+++|||.|+|.++|..+..++++.|.+|-+-|.|+.|+|+ ..++++||.|++||+||+.+|.
T Consensus 503 ----P~G----yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN------s~Y~aTGSsD~tVRlWDv~~G~ 568 (707)
T KOG0263|consen 503 ----PRG----YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN------SNYVATGSSDRTVRLWDVSTGN 568 (707)
T ss_pred ----CCc----eEEEecCCCceeeeeecccCCchhhhcccccccceEEECCc------ccccccCCCCceEEEEEcCCCc
Confidence 677 99999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecce
Q 000673 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1358)
Q Consensus 661 ~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~ 740 (1358)
.++.|.||.++|.+++|+|+|+||++ ++.|+.|.+||+.+|.++..+.||++.+..+.|+.+
T Consensus 569 ~VRiF~GH~~~V~al~~Sp~Gr~LaS--------g~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d---------- 630 (707)
T KOG0263|consen 569 SVRIFTGHKGPVTALAFSPCGRYLAS--------GDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRD---------- 630 (707)
T ss_pred EEEEecCCCCceEEEEEcCCCceEee--------cccCCcEEEEEcCCCcchhhhhcccCceeEEEEecC----------
Confidence 99999999999999999999999994 344599999999999999999999999998888742
Q ss_pred ecCcccccCCccccccCCcEEEEeCCCcc
Q 000673 741 LNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1358)
Q Consensus 741 l~g~~~~s~~l~~~~~D~tvr~W~~~~~~ 769 (1358)
|...++++. |+++|+||+....
T Consensus 631 --g~vLasgg~-----DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 631 --GNVLASGGA-----DNSVRLWDLTKVI 652 (707)
T ss_pred --CCEEEecCC-----CCeEEEEEchhhc
Confidence 334444544 9999999986443
No 16
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=9.5e-24 Score=247.23 Aligned_cols=569 Identities=13% Similarity=0.103 Sum_probs=338.9
Q ss_pred CCCceeEEEEEecCCC---EEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccc
Q 000673 14 PPSHRVTATSALTQPP---TLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAEN 90 (1358)
Q Consensus 14 ~p~h~Vtava~Spdg~---~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~ 90 (1358)
.|..+|+|+.+.|+.+ .++||+.||+|++|.++. .....+..+.||..++.|+.-
T Consensus 52 GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~---~~~~~i~~~~g~~~~~~cv~a------------------- 109 (764)
T KOG1063|consen 52 GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRD---EYLIKIYTIQGHCKECVCVVA------------------- 109 (764)
T ss_pred CCccceEEEEEcccccccceEEEccCCCcEEEEEEee---hheEEEEeecCcceeEEEEEe-------------------
Confidence 3667899999999877 899999999999999994 345566778899998888831
Q ss_pred cCcccccccCCCCeEEEeeCCCeEEEEECCCCc--eEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcccccccc
Q 000673 91 SSNVMGKSSLDNGALISACTDGVLCVWSRSSGH--CRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSF 168 (1358)
Q Consensus 91 ~~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~--c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~ 168 (1358)
........+.|+++.+||.+.-+ |........-...|.....++ +.+...+.|.+
T Consensus 110 ----------~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~~~~lla~Gg------------ 166 (764)
T KOG1063|consen 110 ----------RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NNKTFLLACGG------------ 166 (764)
T ss_pred ----------eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cCCcEEEEecC------------
Confidence 12223334789999999996555 333322221112344444444 45555666665
Q ss_pred cccccccccccccCCCCCCCCceEEEEeCC--CceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEe
Q 000673 169 ESVEGDLVSEDKEVPMKNPPKCTLVIVDTY--GLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVP 246 (1358)
Q Consensus 169 ~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~--tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW 246 (1358)
.+..|-++--. ..+.+..+.+ |.+.|.+++|... +..+-.|+++|+|..+|+|
T Consensus 167 -------------------s~~~v~~~s~~~d~f~~v~el~G---H~DWIrsl~f~~~---~~~~~~laS~SQD~yIRiW 221 (764)
T KOG1063|consen 167 -------------------SKFVVDLYSSSADSFARVAELEG---HTDWIRSLAFARL---GGDDLLLASSSQDRYIRIW 221 (764)
T ss_pred -------------------cceEEEEeccCCcceeEEEEeec---cchhhhhhhhhcc---CCCcEEEEecCCceEEEEE
Confidence 23333333222 2356777888 8889999999875 2235678889999999999
Q ss_pred cccCccccc----ccC-C-----cceecCCccc-c---eEeccCcccCceEEEEecCCcEEEEEecCce--EEeec-CCC
Q 000673 247 ISKESHLDR----EEG-N-----GLCKSSSQLD-M---AILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLL-GSG 309 (1358)
Q Consensus 247 ~l~~~~~~~----~~~-~-----~l~e~~~~~~-~---~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l-~~~ 309 (1358)
.+.-....+ ++. . +.+-...+.. . -..+.+|...|.++-+.|.+..+++++.|++ +|.-- ++|
T Consensus 222 ~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG 301 (764)
T KOG1063|consen 222 RIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTG 301 (764)
T ss_pred EEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccc
Confidence 976542111 100 0 1111100000 0 0124589999999999999988999999888 55431 111
Q ss_pred cccceeeeeecceeeecCCCCCceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccc
Q 000673 310 STIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFE 389 (1358)
Q Consensus 310 ~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~ 389 (1358)
-+...+ .+.-++ .....+.|+.|.+.++ .|+.++.-|..++|.-.. ......
T Consensus 302 iWv~~v-----RlGe~g-g~a~GF~g~lw~~n~~----------------~ii~~g~~Gg~hlWkt~d------~~~w~~ 353 (764)
T KOG1063|consen 302 IWVDVV-----RLGEVG-GSAGGFWGGLWSPNSN----------------VIIAHGRTGGFHLWKTKD------KTFWTQ 353 (764)
T ss_pred eEEEEE-----Eeeccc-ccccceeeEEEcCCCC----------------EEEEecccCcEEEEeccC------ccceee
Confidence 122211 111122 2233567788875555 788899999999999211 011123
Q ss_pred cCCccCCCCCceeEeEeeccceEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeeccccccC
Q 000673 390 IPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDE 469 (1358)
Q Consensus 390 i~~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~ 469 (1358)
.|...++-..+..+.+.+.|+||++++ .|++ .|+|...++..+ -.-+++-...|. .+.-+...+
T Consensus 354 ~~~iSGH~~~V~dv~W~psGeflLsvs-----~DQT------TRlFa~wg~q~~----wHEiaRPQiHGy-Dl~c~~~vn 417 (764)
T KOG1063|consen 354 EPVISGHVDGVKDVDWDPSGEFLLSVS-----LDQT------TRLFARWGRQQE----WHEIARPQIHGY-DLTCLSFVN 417 (764)
T ss_pred ccccccccccceeeeecCCCCEEEEec-----cccc------eeeecccccccc----eeeecccccccc-cceeeehcc
Confidence 344567778889999999999999987 4555 677754332211 122222222222 111000111
Q ss_pred CCCcccccccccccCCccccccccCCCCCCCceeeccc----------CCCcEEEEEeeccCcccCCEEEEEEcCCcEE-
Q 000673 470 NEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVH----------KEKIVSSSMVISESFYAPYAIVYGFFSGEIE- 538 (1358)
Q Consensus 470 ~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~----------h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~- 538 (1358)
.+- .+.+++....+++++.....- .....+.+ .+..|.++- .++..+.|. -..+|..-
T Consensus 418 ~~~----~FVSgAdEKVlRvF~aPk~fv--~~l~~i~g~~~~~~~~~p~gA~VpaLG-LSnKa~~~~----e~~~G~~~~ 486 (764)
T KOG1063|consen 418 EDL----QFVSGADEKVLRVFEAPKSFV--KSLMAICGKCFKGSDELPDGANVPALG-LSNKAFFPG----ETNTGGEAA 486 (764)
T ss_pred CCc----eeeecccceeeeeecCcHHHH--HHHHHHhCccccCchhccccccccccc-ccCCCCccc----ccccccccc
Confidence 111 133334444444444322100 01111111 000111100 111111110 11111110
Q ss_pred EEEecCcccCCCCCCccc-------cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCC-----cEEEE
Q 000673 539 VIQFDLFERHNSPGASLK-------VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC-----SIRIW 606 (1358)
Q Consensus 539 i~~~~~~~~~~~~~~~~d-------~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~-----tI~lW 606 (1358)
.+.=.+....-....... ......++.|.||...|.|++.+ |+| ++++|++... .|++|
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s-----~~g----nliASaCKS~~~ehAvI~lw 557 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAIS-----PTG----NLIASACKSSLKEHAVIRLW 557 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEec-----CCC----CEEeehhhhCCccceEEEEE
Confidence 000000000000000000 00112345688999999999997 778 9999998765 48999
Q ss_pred eCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcE----EEEecCCCCCcEEEEEcCCCC
Q 000673 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV----ERMFPGHPNYPAKVVWDCPRG 682 (1358)
Q Consensus 607 Dl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~----~~~l~gH~~~V~~v~~spd~~ 682 (1358)
+..+......+.+|.-.|+.++|+|| |++|+++|.|+++.||....... ......|...|+++.|+|++.
T Consensus 558 ~t~~W~~~~~L~~HsLTVT~l~FSpd------g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~ 631 (764)
T KOG1063|consen 558 NTANWLQVQELEGHSLTVTRLAFSPD------GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK 631 (764)
T ss_pred eccchhhhheecccceEEEEEEECCC------CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc
Confidence 99999888899999999999999999 99999999999999999754321 123578988889999999999
Q ss_pred EEEEEecCCccccCCCCeEEEEECCCC--eEEE--EEeCCCCceEEEeeecc
Q 000673 683 YIACLCRDHSRTSDAVDVLFIWDVKTG--ARER--VLRGTASHSMFDHFCKG 730 (1358)
Q Consensus 683 ~L~~g~~d~sgssD~DgtV~vWd~~tg--~~~~--~l~GH~~~v~~~~~~~~ 730 (1358)
+++++++ |.+|+||..... +.+. ....+...|+.+.+++-
T Consensus 632 ~FaTaSR--------DK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 632 YFATASR--------DKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred eeEEecC--------CceEEEEeccCchhhhhhhhchhccCCceeeEEeecc
Confidence 9996544 499999998876 3332 23457788888888863
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=2.5e-24 Score=230.64 Aligned_cols=202 Identities=21% Similarity=0.306 Sum_probs=176.8
Q ss_pred eecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
..+.+|++.+.+..|+.++. |++|+.|.++-+ ||+++++....|.||.+.|.+|.++|
T Consensus 139 r~l~gHtgylScC~f~dD~~-----ilT~SGD~TCal---------------WDie~g~~~~~f~GH~gDV~slsl~p-- 196 (343)
T KOG0286|consen 139 RELAGHTGYLSCCRFLDDNH-----ILTGSGDMTCAL---------------WDIETGQQTQVFHGHTGDVMSLSLSP-- 196 (343)
T ss_pred eeecCccceeEEEEEcCCCc-----eEecCCCceEEE---------------EEcccceEEEEecCCcccEEEEecCC--
Confidence 34578999999999888666 899999999988 67889999999999999999999984
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEE
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~ 662 (1358)
.++ +.++||+.|++.++||++.+.+.++|.+|..-|+++.|.|+ |.-|++|++|++.++||++..+.+
T Consensus 197 --~~~----ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~------G~afatGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 197 --SDG----NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS------GDAFATGSDDATCRLYDLRADQEL 264 (343)
T ss_pred --CCC----CeEEecccccceeeeeccCcceeEeecccccccceEEEccC------CCeeeecCCCceeEEEeecCCcEE
Confidence 266 99999999999999999999999999999999999999999 899999999999999999999998
Q ss_pred EEecCC--CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecce
Q 000673 663 RMFPGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1358)
Q Consensus 663 ~~l~gH--~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~ 740 (1358)
..|... ...|++++|+-.|++|..|. . |.++.|||.-.++.+..|.||...|.++..+++ ....++||
T Consensus 265 a~ys~~~~~~gitSv~FS~SGRlLfagy------~--d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D-G~av~TgS- 334 (343)
T KOG0286|consen 265 AVYSHDSIICGITSVAFSKSGRLLFAGY------D--DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD-GMAVATGS- 334 (343)
T ss_pred eeeccCcccCCceeEEEcccccEEEeee------c--CCceeEeeccccceEEEeeccCCeeEEEEECCC-CcEEEecc-
Confidence 888733 34789999999999999532 2 489999999999999999999999988866642 23345554
Q ss_pred ecCcccccCCccccccCCcEEEE
Q 000673 741 LNGNTSVSSLLLPIHEDGTFRQS 763 (1358)
Q Consensus 741 l~g~~~~s~~l~~~~~D~tvr~W 763 (1358)
- |.++|+|
T Consensus 335 ----------W-----Ds~lriW 342 (343)
T KOG0286|consen 335 ----------W-----DSTLRIW 342 (343)
T ss_pred ----------h-----hHheeec
Confidence 3 8999999
No 18
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=2.5e-26 Score=249.07 Aligned_cols=140 Identities=25% Similarity=0.363 Sum_probs=120.6
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
+++++.|.+|++ |++.++++++++.||+..|.|+.+. | ++++|||.|.||++||
T Consensus 333 IVsASgDRTikv---------------W~~st~efvRtl~gHkRGIAClQYr-------~----rlvVSGSSDntIRlwd 386 (499)
T KOG0281|consen 333 IVSASGDRTIKV---------------WSTSTCEFVRTLNGHKRGIACLQYR-------D----RLVVSGSSDNTIRLWD 386 (499)
T ss_pred EEEecCCceEEE---------------Eeccceeeehhhhcccccceehhcc-------C----eEEEecCCCceEEEEe
Confidence 788888999999 5577999999999999999999874 4 8999999999999999
Q ss_pred CCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc---------EEEEecCCCCCcEEEEEc
Q 000673 608 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR---------VERMFPGHPNYPAKVVWD 678 (1358)
Q Consensus 608 l~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~---------~~~~l~gH~~~V~~v~~s 678 (1358)
+..|.|++.+.||..-|.|+.|. .+.++||+.||+|++||+.++. |+.++..|++.|..+.|.
T Consensus 387 i~~G~cLRvLeGHEeLvRciRFd--------~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 387 IECGACLRVLEGHEELVRCIRFD--------NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD 458 (499)
T ss_pred ccccHHHHHHhchHHhhhheeec--------CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec
Confidence 99999999999999999999996 4689999999999999998753 567778899999999995
Q ss_pred CCCCEEEEEecCCccccCCCCeEEEEECCCCeE
Q 000673 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1358)
Q Consensus 679 pd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~ 711 (1358)
...+++ .+. |.+|-|||+..|..
T Consensus 459 --~fqIvs------ssH--ddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 459 --EFQIIS------SSH--DDTILIWDFLNGPP 481 (499)
T ss_pred --ceEEEe------ccC--CCeEEEEEcCCCCc
Confidence 444552 123 47999999987654
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.7e-25 Score=242.94 Aligned_cols=101 Identities=25% Similarity=0.450 Sum_probs=95.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCC
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNY 671 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~ 671 (1358)
+++++||.|++||+||+.+|.|+.++.+|...|+.++|+|. |++|+|+.+|+++++||+++++|...++.|...
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~------Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf 378 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG------GKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF 378 (406)
T ss_pred cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCC------CeEEEEEecCCcEEEEEeccceeeeccCCCcce
Confidence 79999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 672 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 672 V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
++++.|+.+-.|+++|+. | .++++|.-
T Consensus 379 vt~lDfh~~~p~VvTGsV------d--qt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSV------D--QTVKVWEC 405 (406)
T ss_pred eEEEecCCCCceEEeccc------c--ceeeeeec
Confidence 999999999999996544 3 89999974
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=238.46 Aligned_cols=209 Identities=20% Similarity=0.243 Sum_probs=183.5
Q ss_pred eecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
....+|...|.++.+.+.+.+ +++.+.|.+|+. |++.+|.++.+|.||...|.-++.+
T Consensus 187 ks~~gh~h~vS~V~f~P~gd~----ilS~srD~tik~---------------We~~tg~cv~t~~~h~ewvr~v~v~--- 244 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLGDH----ILSCSRDNTIKA---------------WECDTGYCVKTFPGHSEWVRMVRVN--- 244 (406)
T ss_pred HHhcCcccceeeEEEEecCCe----eeecccccceeE---------------EecccceeEEeccCchHhEEEEEec---
Confidence 344678889999998888877 999999999999 4456888999999999999999987
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCC---------CCCCeEEEEeCCCcEEE
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH---------PWSDCFLSVGEDFSVAL 653 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~---------~~g~~l~S~s~D~tV~l 653 (1358)
.|| .+++|||.|.++++|-+.+++|...+..|..+|.|++|.|+..+. ..++++.+++.|++|++
T Consensus 245 --~DG----ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 245 --QDG----TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred --CCe----eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 788 999999999999999999999999999999999999999874321 12469999999999999
Q ss_pred EECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeeccccc
Q 000673 654 ASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISM 733 (1358)
Q Consensus 654 wdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~ 733 (1358)
||+.+++|+.++.||.++|..++|+|.|+||++ ++| |++++|||++++++.+++..|...++.+.|.... +
T Consensus 319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~S-------caD-Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~-p 389 (406)
T KOG0295|consen 319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILS-------CAD-DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA-P 389 (406)
T ss_pred EeccCCeEEEEEecccceeeeeEEcCCCeEEEE-------Eec-CCcEEEEEeccceeeeccCCCcceeEEEecCCCC-c
Confidence 999999999999999999999999999999993 555 7999999999999999999999999988776532 3
Q ss_pred ceeecceecCcccccCCccccccCCcEEEEe
Q 000673 734 NSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 734 ~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~ 764 (1358)
.+++|+ + |.++|+|.
T Consensus 390 ~VvTGs-----------V-----dqt~KvwE 404 (406)
T KOG0295|consen 390 YVVTGS-----------V-----DQTVKVWE 404 (406)
T ss_pred eEEecc-----------c-----cceeeeee
Confidence 455555 4 99999995
No 21
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=1.3e-24 Score=233.69 Aligned_cols=238 Identities=17% Similarity=0.177 Sum_probs=193.3
Q ss_pred ecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEecccc
Q 000673 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~ 583 (1358)
.+.+|.+.|+...|.+++.+ +++|+.|..|.+|+.. ...+..-+++||+++|..|.|.
T Consensus 42 ~l~gh~geI~~~~F~P~gs~----~aSgG~Dr~I~LWnv~--------------gdceN~~~lkgHsgAVM~l~~~---- 99 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSC----FASGGSDRAIVLWNVY--------------GDCENFWVLKGHSGAVMELHGM---- 99 (338)
T ss_pred hcCCCcceEEEEEECCCCCe----EeecCCcceEEEEecc--------------ccccceeeeccccceeEeeeec----
Confidence 35789999999997777776 9999999999996633 1233567788999999999997
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEE
Q 000673 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1358)
Q Consensus 584 ~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~ 663 (1358)
+|+ +.++|+|.|++|+.||+++|++++++++|.+-|+++.-+.. .-.+++|++.|++++|||+++..+++
T Consensus 100 -~d~----s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rr-----g~~lv~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 100 -RDG----SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRR-----GPQLVCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred -cCC----CEEEEecCCceEEEEecccceeeehhccccceeeecCcccc-----CCeEEEecCCCceEEEEeecccchhh
Confidence 777 99999999999999999999999999999999999983332 24688999999999999999999999
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecceecC
Q 000673 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNG 743 (1358)
Q Consensus 664 ~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g 743 (1358)
++... .+++++.|..++..+++|+-| +.|++||++.++...++.||.+.|+.+...+ .|
T Consensus 170 t~~~k-yqltAv~f~d~s~qv~sggId--------n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~------------~g 228 (338)
T KOG0265|consen 170 TFENK-YQLTAVGFKDTSDQVISGGID--------NDIKVWDLRKNDGLYTLSGHADTITGLSLSR------------YG 228 (338)
T ss_pred ccccc-eeEEEEEecccccceeecccc--------CceeeeccccCcceEEeecccCceeeEEecc------------CC
Confidence 88644 478999999999999965543 8999999999999999999999999874432 45
Q ss_pred cccccCCccccccCCcEEEEeCCCcccccccccCCCCCccccccCCCCCCCCCCccccccccccccccCCCCCc
Q 000673 744 NTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGI 817 (1358)
Q Consensus 744 ~~~~s~~l~~~~~D~tvr~W~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~s~~~~~~~~~~ik~~~~~~~~ 817 (1358)
.+++++++ |+++|+|+.+ |+.|......++.|+..+ |.++.++|+|++.+.
T Consensus 229 s~llsnsM-----d~tvrvwd~r--------p~~p~~R~v~if~g~~hn----------feknlL~cswsp~~~ 279 (338)
T KOG0265|consen 229 SFLLSNSM-----DNTVRVWDVR--------PFAPSQRCVKIFQGHIHN----------FEKNLLKCSWSPNGT 279 (338)
T ss_pred Cccccccc-----cceEEEEEec--------ccCCCCceEEEeecchhh----------hhhhcceeeccCCCC
Confidence 66777777 9999999987 222322323344455443 778889999987543
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=5.7e-26 Score=246.36 Aligned_cols=268 Identities=23% Similarity=0.241 Sum_probs=208.4
Q ss_pred cccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccc
Q 000673 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1358)
Q Consensus 477 ~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d 556 (1358)
++.++..++++++||..+. .....+.||++.|-|+. |...-+++|+.|.+|++ ||
T Consensus 209 kiVSGlrDnTikiWD~n~~----~c~~~L~GHtGSVLCLq------yd~rviisGSSDsTvrv---------------WD 263 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSL----ECLKILTGHTGSVLCLQ------YDERVIVSGSSDSTVRV---------------WD 263 (499)
T ss_pred hhhcccccCceEEeccccH----HHHHhhhcCCCcEEeee------ccceEEEecCCCceEEE---------------Ee
Confidence 5677888999999998654 45566799999999977 44445999999999999 45
Q ss_pred cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCc---EEEEEecCCCcEEEEEeCCCC
Q 000673 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQ 633 (1358)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~---~l~~~~~H~~~V~~l~~spd~ 633 (1358)
+++|+++.+|-+|...|..+.|+ +.+++|+|.|.+|.+||+.+.. +.+.+.||...|+.+.|+
T Consensus 264 v~tge~l~tlihHceaVLhlrf~-----------ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--- 329 (499)
T KOG0281|consen 264 VNTGEPLNTLIHHCEAVLHLRFS-----------NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--- 329 (499)
T ss_pred ccCCchhhHHhhhcceeEEEEEe-----------CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---
Confidence 66999999999999999999996 2699999999999999998764 446788999999999996
Q ss_pred CCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEE
Q 000673 634 TEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1358)
Q Consensus 634 ~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~ 713 (1358)
.++++|++.|++|++|++.++++++++.||...|-|+.+. |+++++ |++| .+||+||++.|.+++
T Consensus 330 -----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVS------GSSD--ntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 330 -----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVS------GSSD--NTIRLWDIECGACLR 394 (499)
T ss_pred -----cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEe------cCCC--ceEEEEeccccHHHH
Confidence 5799999999999999999999999999999999888874 778874 4555 899999999999999
Q ss_pred EEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCcccccccccCCCCCccccccCCCCCC
Q 000673 714 VLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKP 793 (1358)
Q Consensus 714 ~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~ 793 (1358)
.++||..-|-++.|-. ..+++|.+ ||++|+|++...+++-+....-+-. +.++ |.
T Consensus 395 vLeGHEeLvRciRFd~---krIVSGaY----------------DGkikvWdl~aaldpra~~~~~Cl~-~lv~--hs--- 449 (499)
T KOG0281|consen 395 VLEGHEELVRCIRFDN---KRIVSGAY----------------DGKIKVWDLQAALDPRAPASTLCLR-TLVE--HS--- 449 (499)
T ss_pred HHhchHHhhhheeecC---ceeeeccc----------------cceEEEEecccccCCcccccchHHH-hhhh--cc---
Confidence 9999999887776643 44666653 9999999998776654444332211 1111 11
Q ss_pred CCCCccccccccccccccCCCCCcEEEEeecccc
Q 000673 794 SLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASL 827 (1358)
Q Consensus 794 ~~~s~~~~~~~~~~ik~~~~~~~~~il~fd~e~l 827 (1358)
...+-+||+-..|-.+...+ .||.+|..+-
T Consensus 450 --gRVFrLQFD~fqIvsssHdd--tILiWdFl~~ 479 (499)
T KOG0281|consen 450 --GRVFRLQFDEFQIISSSHDD--TILIWDFLNG 479 (499)
T ss_pred --ceeEEEeecceEEEeccCCC--eEEEEEcCCC
Confidence 12334567666664332234 5555555443
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=5.3e-23 Score=220.48 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=140.3
Q ss_pred eecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
..|.+|++-|.++.+.++ .++.+++|+-|+..++ ||+.++.++++|.||...|++|.|+
T Consensus 180 ~~f~GH~gDV~slsl~p~---~~ntFvSg~cD~~akl---------------WD~R~~~c~qtF~ghesDINsv~ff--- 238 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPS---DGNTFVSGGCDKSAKL---------------WDVRSGQCVQTFEGHESDINSVRFF--- 238 (343)
T ss_pred EEecCCcccEEEEecCCC---CCCeEEecccccceee---------------eeccCcceeEeecccccccceEEEc---
Confidence 344567777777665553 2334899999999999 6688889999999999999999999
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecC--CCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H--~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~ 660 (1358)
|+| .-+++||.|++.|+||++..+.+..|... ..+|++++|+.. |+++.+|..|.++.+||.-.++
T Consensus 239 --P~G----~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S------GRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 239 --PSG----DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS------GRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred --cCC----CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc------ccEEEeeecCCceeEeeccccc
Confidence 788 89999999999999999999988888643 358999999998 9999999999999999999999
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEE
Q 000673 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1358)
Q Consensus 661 ~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd 705 (1358)
.+..+.||.++|+++..+|||.-+++| |- |.++|||.
T Consensus 307 ~vg~L~GHeNRvScl~~s~DG~av~Tg------SW--Ds~lriW~ 343 (343)
T KOG0286|consen 307 RVGVLAGHENRVSCLGVSPDGMAVATG------SW--DSTLRIWA 343 (343)
T ss_pred eEEEeeccCCeeEEEEECCCCcEEEec------ch--hHheeecC
Confidence 999999999999999999999999853 33 48999994
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.92 E-value=6.9e-24 Score=226.25 Aligned_cols=278 Identities=17% Similarity=0.188 Sum_probs=208.9
Q ss_pred ccccccCCccccccccC-CCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccc
Q 000673 478 SDLTFCQDTVPRSEHVD-SRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~-~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d 556 (1358)
+.+.+.+..+-+|++.. ....|.....|.||...|+.+...++..| .++|+.||++++ ||
T Consensus 31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~----alS~swD~~lrl---------------WD 91 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNF----ALSASWDGTLRL---------------WD 91 (315)
T ss_pred EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCce----EEeccccceEEE---------------EE
Confidence 34445555666677543 33445778889999999999999999998 999999999999 55
Q ss_pred cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecC--CCcEEEEEeCCCCC
Q 000673 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--VAPVRQIILSPPQT 634 (1358)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H--~~~V~~l~~spd~~ 634 (1358)
+.++++.+.|.||+..|.+++|+ +|. ..++|||.|+||++|++. |.|..++..+ .+.|.|+.|+|+..
T Consensus 92 l~~g~~t~~f~GH~~dVlsva~s-----~dn----~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 92 LATGESTRRFVGHTKDVLSVAFS-----TDN----RQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred ecCCcEEEEEEecCCceEEEEec-----CCC----ceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 77889999999999999999998 666 899999999999999985 5666666554 78999999999842
Q ss_pred CCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEE
Q 000673 635 EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1358)
Q Consensus 635 ~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~ 714 (1358)
.-+|++++.|++|++||+++.+....+.||.+.++.+.++|||...++| .+||.+.+||++.++.+.+
T Consensus 162 ----~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG--------gkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 162 ----NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG--------GKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred ----CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC--------CCCceEEEEEccCCceeEe
Confidence 4699999999999999999999999999999999999999999999843 4459999999999999888
Q ss_pred EeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCcccccccccCCCCCccccccCCCCCCC
Q 000673 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPS 794 (1358)
Q Consensus 715 l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~ 794 (1358)
+. |.+.|.++.|.+. ...+-...+..||+|++.... +-. ++..-..|...+
T Consensus 230 l~-a~~~v~sl~fspn------------------rywL~~at~~sIkIwdl~~~~--~v~------~l~~d~~g~s~~-- 280 (315)
T KOG0279|consen 230 LE-AFDIVNSLCFSPN------------------RYWLCAATATSIKIWDLESKA--VVE------ELKLDGIGPSSK-- 280 (315)
T ss_pred cc-CCCeEeeEEecCC------------------ceeEeeccCCceEEEeccchh--hhh------hccccccccccc--
Confidence 64 5567766655531 122223346779999864110 000 000000001000
Q ss_pred CCCccccccccccccccCCCCCcEEEEeeccccccccc
Q 000673 795 LNTRIGLQRKKQTIKCSCPYPGIATLSFDLASLMFPYQ 832 (1358)
Q Consensus 795 ~~s~~~~~~~~~~ik~~~~~~~~~il~fd~e~l~~~~~ 832 (1358)
. -..+-+-++|+.+|.+.+.-+-++.+..++
T Consensus 281 -----~--~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 281 -----A--GDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred -----c--CCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 0 112234568999999998888888876553
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=4e-23 Score=233.17 Aligned_cols=170 Identities=16% Similarity=0.246 Sum_probs=142.7
Q ss_pred ecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEecccc
Q 000673 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~ 583 (1358)
+|.+|++.|.++.+-+.+.. |++++.|++++|| +.....+.+.|.+|+..|..+.|+|...
T Consensus 354 t~~GH~g~V~alk~n~tg~L----LaS~SdD~TlkiW---------------s~~~~~~~~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 354 TFIGHHGEVNALKWNPTGSL----LASCSDDGTLKIW---------------SMGQSNSVHDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred eeecccCceEEEEECCCCce----EEEecCCCeeEee---------------ecCCCcchhhhhhhccceeeEeecCCCC
Confidence 45678889999775444444 8999999999994 3445557888999999999999997543
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEE
Q 000673 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1358)
Q Consensus 584 ~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~ 663 (1358)
.......+..+++++.|++|++||+..|.++++|..|..+|.+++|+|+ |.++++|+.||.|.+|++++++.++
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~------g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN------GRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC------CcEEEecCCCCeeEeccccchheeE
Confidence 1111233579999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 664 ~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
.+.+- +.|..++|+.+|++|.. +.. |+.+++-|++
T Consensus 489 s~~~~-~~Ifel~Wn~~G~kl~~-------~~s-d~~vcvldlr 523 (524)
T KOG0273|consen 489 SYQGT-GGIFELCWNAAGDKLGA-------CAS-DGSVCVLDLR 523 (524)
T ss_pred eecCC-CeEEEEEEcCCCCEEEE-------Eec-CCCceEEEec
Confidence 99876 47999999999998873 222 5899999886
No 26
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=3.4e-21 Score=229.87 Aligned_cols=514 Identities=12% Similarity=0.065 Sum_probs=321.4
Q ss_pred ceeEEEEeCCCCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcc
Q 000673 3 CRSVACIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGK 82 (1358)
Q Consensus 3 ~~~~~~lw~~~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~ 82 (1358)
|+-+.+.|.... ..|.-+. |-|..|+++..++.+.+|+......+....+-.+.+--..|++|. .+
T Consensus 103 gk~i~~~~~~~~--a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~--HP-------- 168 (910)
T KOG1539|consen 103 GKHIRHTTLLHG--AKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL--HP-------- 168 (910)
T ss_pred cceEEEEecccc--ceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe--cc--------
Confidence 344555555444 4555433 358999999999999999998510110111122222222388873 34
Q ss_pred cccccccccCcccccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCC--CceEEEEeeccCC
Q 000673 83 AEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNP--RYVCIGCCFIDTN 160 (1358)
Q Consensus 83 ~~~~~~~~~~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~--~~~~l~c~~~~~~ 160 (1358)
+--=+.++-|+.+|.|.|||+.+|+.+.+.+.. .+.|..+...+ +.+.++|.
T Consensus 169 ----------------~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~-----~s~IT~ieqsPaLDVVaiG~~----- 222 (910)
T KOG1539|consen 169 ----------------STYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEF-----FSRITAIEQSPALDVVAIGLE----- 222 (910)
T ss_pred ----------------hhheeeEEEeecCCcEEEEEeccCcEEEEeccc-----ccceeEeccCCcceEEEEecc-----
Confidence 333467899999999999999999998776543 36666666554 44455554
Q ss_pred cccccccccccccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCC
Q 000673 161 QLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVG 240 (1358)
Q Consensus 161 ~~~~~~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~d 240 (1358)
.++|.|+|....+++.++.+ ..++|++++|..+ | +.++++++..
T Consensus 223 ----------------------------~G~ViifNlK~dkil~sFk~---d~g~VtslSFrtD---G--~p~las~~~~ 266 (910)
T KOG1539|consen 223 ----------------------------NGTVIIFNLKFDKILMSFKQ---DWGRVTSLSFRTD---G--NPLLASGRSN 266 (910)
T ss_pred ----------------------------CceEEEEEcccCcEEEEEEc---cccceeEEEeccC---C--CeeEEeccCC
Confidence 48999999999999999999 7788999999864 3 4588888899
Q ss_pred cEEEEecccCcccccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce----EEeecCCCcccceee
Q 000673 241 RLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC----IFRLLGSGSTIGEIC 316 (1358)
Q Consensus 241 g~vkvW~l~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~----i~d~l~~~~~~~~~~ 316 (1358)
|.+-+||++.+. ......+.|.+++....|.+....+++.+.|.+ ++|..+.. ..
T Consensus 267 G~m~~wDLe~kk----------------l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~---pR-- 325 (910)
T KOG1539|consen 267 GDMAFWDLEKKK----------------LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV---PR-- 325 (910)
T ss_pred ceEEEEEcCCCe----------------eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc---ch--
Confidence 999999999841 122345678889999999999999999988876 66742221 11
Q ss_pred eeecceeeecCCCCCceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEcc--CCc-------cccCCCc
Q 000673 317 FVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISY--MNE-------KFDYEPH 387 (1358)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~--~~~-------~~~~~~~ 387 (1358)
-+....+++.+.. ...|. ... ...++....|++.+.|.+-. .+. ..+.+.+
T Consensus 326 ---~LR~R~GHs~Pp~--~irfy-~~~--------------g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~ 385 (910)
T KOG1539|consen 326 ---LLRSRGGHSAPPS--CIRFY-GSQ--------------GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKV 385 (910)
T ss_pred ---heeeccCCCCCch--heeee-ccC--------------cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccc
Confidence 1222333332221 11222 111 22555566666555554421 000 0000000
Q ss_pred cccCCccCCCCCceeEeEeeccc----eEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeec
Q 000673 388 FEIPAVSYPSGVKFSIHFIQMSL----YLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNN 463 (1358)
Q Consensus 388 ~~i~~~~~~~~~~~~~~f~~~~~----~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~ 463 (1358)
+.-.....--..++.+.|.-... .+.+.. . + +...+.|+...+ .-|+|...
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h---~--~-----~~~~~tW~~~n~---------------~~G~~~L~ 440 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAH---K--G-----KRSAYTWNFRNK---------------TSGRHVLD 440 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEe---c--C-----cceEEEEeccCc---------------ccccEEec
Confidence 00000000001111111111100 111111 0 0 011344543221 11222222
Q ss_pred ccc-----------ccCCCCcccccccccccCCccccccccCCCCCCCceeec---ccCCCcEEEEEeeccCcccCCEEE
Q 000673 464 STF-----------LDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDF---VHKEKIVSSSMVISESFYAPYAIV 529 (1358)
Q Consensus 464 ~~~-----------~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~~~---~~h~~~Vts~~~i~~~~~~p~~lv 529 (1358)
.-. ..+..|+ -..++.+.+.|..++.....+. ..| ..|..+|+.++...-+.. ++
T Consensus 441 ~~~~~~~~~~~~av~vs~CGN---F~~IG~S~G~Id~fNmQSGi~r----~sf~~~~ah~~~V~gla~D~~n~~----~v 509 (910)
T KOG1539|consen 441 PKRFKKDDINATAVCVSFCGN---FVFIGYSKGTIDRFNMQSGIHR----KSFGDSPAHKGEVTGLAVDGTNRL----LV 509 (910)
T ss_pred CccccccCcceEEEEEeccCc---eEEEeccCCeEEEEEcccCeee----cccccCccccCceeEEEecCCCce----EE
Confidence 100 0111111 1223444667777776544332 233 468999999886666655 99
Q ss_pred EEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCC
Q 000673 530 YGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG 609 (1358)
Q Consensus 530 ~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~ 609 (1358)
+++.+|.+..|+|. ....+..++- ...++++.+| ... ..++.+..|..|++.|..
T Consensus 510 sa~~~Gilkfw~f~---------------~k~l~~~l~l-~~~~~~iv~h-----r~s----~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 510 SAGADGILKFWDFK---------------KKVLKKSLRL-GSSITGIVYH-----RVS----DLLAIALDDFSIRVVDVV 564 (910)
T ss_pred EccCcceEEEEecC---------------Ccceeeeecc-CCCcceeeee-----ehh----hhhhhhcCceeEEEEEch
Confidence 99999999997665 3334444432 3467788777 223 689999999999999999
Q ss_pred CCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEec
Q 000673 610 SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCR 689 (1358)
Q Consensus 610 sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~ 689 (1358)
+.+..+.|.||++.|+++.|||| |+++++++.|++|++||+-++.++-.+.- ..+++.+.|+|+|+||++...
T Consensus 565 t~kvvR~f~gh~nritd~~FS~D------grWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 565 TRKVVREFWGHGNRITDMTFSPD------GRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred hhhhhHHhhccccceeeeEeCCC------CcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEe
Confidence 99999999999999999999999 99999999999999999999999987764 357899999999999998665
Q ss_pred CCccccCCCCeEEEEECCC
Q 000673 690 DHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 690 d~sgssD~DgtV~vWd~~t 708 (1358)
| ..-|++|--++
T Consensus 638 d-------~~gIylWsNks 649 (910)
T KOG1539|consen 638 D-------QNGIYLWSNKS 649 (910)
T ss_pred c-------CceEEEEEchh
Confidence 4 26799997554
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.91 E-value=3.5e-23 Score=220.92 Aligned_cols=215 Identities=15% Similarity=0.164 Sum_probs=180.3
Q ss_pred ceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEec
Q 000673 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1358)
Q Consensus 501 ~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp 580 (1358)
+.-.+.+|++.|++...... .|+.++.++.|..+.+|+... .|.+.|.+++.|.||...|+.+..+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~W~L~~----------dd~~~G~~~r~~~GHsH~v~dv~~s- 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIVWKLTS----------DDIKYGVPVRRLTGHSHFVSDVVLS- 72 (315)
T ss_pred eeeeecCCCceEEEEEeecC---CCceEEEcccceEEEEEEecc----------CccccCceeeeeeccceEecceEEc-
Confidence 34567899999999775544 456789999999999977653 2677888999999999999999997
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc
Q 000673 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1358)
Q Consensus 581 ~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~ 660 (1358)
+|| ++.+|+|.|+++|+||+.+|+..+.|.||+..|.+++|+|| ...++||+.|++|++||+. +.
T Consensus 73 ----~dg----~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d------n~qivSGSrDkTiklwnt~-g~ 137 (315)
T KOG0279|consen 73 ----SDG----NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD------NRQIVSGSRDKTIKLWNTL-GV 137 (315)
T ss_pred ----cCC----ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC------CceeecCCCcceeeeeeec-cc
Confidence 888 99999999999999999999999999999999999999999 7899999999999999987 55
Q ss_pred EEEEecCC--CCCcEEEEEcCC--CCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeeccccccee
Q 000673 661 VERMFPGH--PNYPAKVVWDCP--RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 736 (1358)
Q Consensus 661 ~~~~l~gH--~~~V~~v~~spd--~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~ 736 (1358)
|..++..+ .++|++++|+|+ ..+|+ +++.|++|++||+++.++...+.||+..+..+.++++.+. +.
T Consensus 138 ck~t~~~~~~~~WVscvrfsP~~~~p~Iv--------s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGsl-ca 208 (315)
T KOG0279|consen 138 CKYTIHEDSHREWVSCVRFSPNESNPIIV--------SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSL-CA 208 (315)
T ss_pred EEEEEecCCCcCcEEEEEEcCCCCCcEEE--------EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCE-Ee
Confidence 66665544 689999999998 56777 3344599999999999999999999999998877754332 22
Q ss_pred ecceecCcccccCCccccccCCcEEEEeCCCcc
Q 000673 737 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1358)
Q Consensus 737 sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~ 769 (1358)
+| .+|+....|++.+.+
T Consensus 209 sG----------------gkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 209 SG----------------GKDGEAMLWDLNEGK 225 (315)
T ss_pred cC----------------CCCceEEEEEccCCc
Confidence 22 259999999987443
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.91 E-value=1.6e-22 Score=228.45 Aligned_cols=316 Identities=19% Similarity=0.181 Sum_probs=227.1
Q ss_pred cccCceEEEEecCCc-EEEEEecCce--EEeecC-CCccc--ceeeeeecceeeecCCCCCceEEEEeecccchhccccc
Q 000673 277 VVEGGHLVSVATCGN-IIALVLKDHC--IFRLLG-SGSTI--GEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENT 350 (1358)
Q Consensus 277 ~~~~v~~vs~s~dg~-~~~~~~~~~~--i~d~l~-~~~~~--~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~ 350 (1358)
|...|.+-++.|-.+ .++....+.. +|.+.+ ..... -.+.. -..+|....+.+..+.+..|-.+++
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh-~~~~~~~s~~~nkdVT~L~Wn~~G~------- 248 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRH-CIREGGKSVPSNKDVTSLDWNNDGT------- 248 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhh-hhhhhcccCCccCCcceEEecCCCC-------
Confidence 666667777777666 5555555544 777743 11100 00100 0011223333444555666653444
Q ss_pred cccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeEeeccceEEEeeeecccccccccccC
Q 000673 351 MGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRP 430 (1358)
Q Consensus 351 ~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p 430 (1358)
.+++++.+|.+++|+.++ ..+.....+...++++++...|.||++.. .|+.
T Consensus 249 ---------~LatG~~~G~~riw~~~G----------~l~~tl~~HkgPI~slKWnk~G~yilS~~-----vD~t----- 299 (524)
T KOG0273|consen 249 ---------LLATGSEDGEARIWNKDG----------NLISTLGQHKGPIFSLKWNKKGTYILSGG-----VDGT----- 299 (524)
T ss_pred ---------eEEEeecCcEEEEEecCc----------hhhhhhhccCCceEEEEEcCCCCEEEecc-----CCcc-----
Confidence 789999999999999987 45555667778889999999999999875 5555
Q ss_pred eEEEEecCCCCCCCCcceeEEeecCccceeeeccccccCCCCcccccccccccCCccccccccCCCCCCCceeecccCCC
Q 000673 431 YISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEK 510 (1358)
Q Consensus 431 ~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~ 510 (1358)
+.+|+... +... +.|.-|..
T Consensus 300 -tilwd~~~-----g~~~------------------------------------------------------q~f~~~s~ 319 (524)
T KOG0273|consen 300 -TILWDAHT-----GTVK------------------------------------------------------QQFEFHSA 319 (524)
T ss_pred -EEEEeccC-----ceEE------------------------------------------------------EeeeeccC
Confidence 77784211 1000 00111111
Q ss_pred cEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCcc
Q 000673 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSF 590 (1358)
Q Consensus 511 ~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~ 590 (1358)
+--.+....+.. +++.+.||.|+++..+ ...|..++.||.+.|.++.|. |.|
T Consensus 320 ~~lDVdW~~~~~-----F~ts~td~~i~V~kv~---------------~~~P~~t~~GH~g~V~alk~n-----~tg--- 371 (524)
T KOG0273|consen 320 PALDVDWQSNDE-----FATSSTDGCIHVCKVG---------------EDRPVKTFIGHHGEVNALKWN-----PTG--- 371 (524)
T ss_pred CccceEEecCce-----EeecCCCceEEEEEec---------------CCCcceeeecccCceEEEEEC-----CCC---
Confidence 101111122233 5778899999997755 344789999999999999998 667
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCC---CCCCCeEEEEeCCCcEEEEECCCCcEEEEecC
Q 000673 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE---HPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1358)
Q Consensus 591 ~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~---~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~g 667 (1358)
.+|+|+|.|+|++||......+.+.|.+|...|..+.|+|.++. ...+..+++++.|++|++||+..+.++..|..
T Consensus 372 -~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k 450 (524)
T KOG0273|consen 372 -SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK 450 (524)
T ss_pred -ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc
Confidence 99999999999999999999999999999999999999999653 23456899999999999999999999999999
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEee
Q 000673 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 727 (1358)
Q Consensus 668 H~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~ 727 (1358)
|..+|++++|+|+|+|+++|+. ||.|.+|+.++|++++.+.|-.. +..+.|
T Consensus 451 H~~pVysvafS~~g~ylAsGs~--------dg~V~iws~~~~~l~~s~~~~~~-Ifel~W 501 (524)
T KOG0273|consen 451 HQEPVYSVAFSPNGRYLASGSL--------DGCVHIWSTKTGKLVKSYQGTGG-IFELCW 501 (524)
T ss_pred CCCceEEEEecCCCcEEEecCC--------CCeeEeccccchheeEeecCCCe-EEEEEE
Confidence 9999999999999999996544 39999999999999999988653 433333
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.91 E-value=1.4e-23 Score=250.71 Aligned_cols=220 Identities=24% Similarity=0.356 Sum_probs=182.3
Q ss_pred ecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcc--cC-----CC---CC------CccccCCceEEEEEe
Q 000673 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFE--RH-----NS---PG------ASLKVNSHVSRQYFL 567 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~--~~-----~~---~~------~~~d~~t~~~~~~l~ 567 (1358)
++..-...|+|..|..+... +++|+.|..|++|...+.. +. .. +. ..-|-.+....++|.
T Consensus 373 T~~nt~~~v~ca~fSddssm----lA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSM----LACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEcCCcceeEeecCCcch----hhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 33444567888776666654 9999999999998876421 00 00 00 011223344567799
Q ss_pred cCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC
Q 000673 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1358)
Q Consensus 568 gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~ 647 (1358)
||+++|....|+ |+. ++|+|+|+|++||+|.+.+..++..++||..||+.+.|+|. |.+|||+|.
T Consensus 449 GH~GPVyg~sFs-----Pd~----rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~------GyYFatas~ 513 (707)
T KOG0263|consen 449 GHSGPVYGCSFS-----PDR----RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR------GYYFATASH 513 (707)
T ss_pred cCCCceeeeeec-----ccc----cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC------ceEEEecCC
Confidence 999999999998 666 99999999999999999999999999999999999999999 999999999
Q ss_pred CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEee
Q 000673 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 727 (1358)
Q Consensus 648 D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~ 727 (1358)
|++.++|.....++++.|.||.+.|.|+.|||+..|+++ ||+| ++||+||+.+|..+|.|.||.+.|+++.|
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aT------GSsD--~tVRlWDv~~G~~VRiF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVAT------GSSD--RTVRLWDVSTGNSVRIFTGHKGPVTALAF 585 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCccccccc------CCCC--ceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence 999999999999999999999999999999999999995 4444 99999999999999999999999999999
Q ss_pred ecccccceeecceecCcccccCCccccccCCcEEEEeCCC
Q 000673 728 CKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1358)
Q Consensus 728 ~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~ 767 (1358)
++ +|.+..++. +|+.|++||+.+
T Consensus 586 Sp------------~Gr~LaSg~-----ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 586 SP------------CGRYLASGD-----EDGLIKIWDLAN 608 (707)
T ss_pred cC------------CCceEeecc-----cCCcEEEEEcCC
Confidence 86 334444444 499999999863
No 30
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=2.8e-22 Score=215.94 Aligned_cols=139 Identities=19% Similarity=0.300 Sum_probs=117.7
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
+++|.-|+.|++ ||+..+....++.||.+.|+.+..+ ++| .++.|-+.|.++++||
T Consensus 189 v~sggIdn~ikv---------------Wd~r~~d~~~~lsGh~DtIt~lsls-----~~g----s~llsnsMd~tvrvwd 244 (338)
T KOG0265|consen 189 VISGGIDNDIKV---------------WDLRKNDGLYTLSGHADTITGLSLS-----RYG----SFLLSNSMDNTVRVWD 244 (338)
T ss_pred eeeccccCceee---------------eccccCcceEEeecccCceeeEEec-----cCC----CccccccccceEEEEE
Confidence 466677788888 4455566789999999999999997 778 9999999999999999
Q ss_pred CCC----CcEEEEEecCCC----cEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC
Q 000673 608 LGS----GNLITVMHHHVA----PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC 679 (1358)
Q Consensus 608 l~s----g~~l~~~~~H~~----~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~sp 679 (1358)
++. .+++..|.+|.. ....++|+|+ +..+-.|+.|+.+.+||....+.+..++||.+.|.++.|+|
T Consensus 245 ~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~------~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 245 VRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN------GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred ecccCCCCceEEEeecchhhhhhhcceeeccCC------CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC
Confidence 973 456888988754 3457789999 88999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCccccCCCCeEEEE
Q 000673 680 PRGYIACLCRDHSRTSDAVDVLFIW 704 (1358)
Q Consensus 680 d~~~L~~g~~d~sgssD~DgtV~vW 704 (1358)
...+|.++ ++ |.+|++=
T Consensus 319 ~e~iils~------~s--dk~i~lg 335 (338)
T KOG0265|consen 319 TEPIILSC------SS--DKTIYLG 335 (338)
T ss_pred CCcEEEEe------cc--CceeEee
Confidence 99999843 33 4888863
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2e-23 Score=241.27 Aligned_cols=221 Identities=23% Similarity=0.269 Sum_probs=190.2
Q ss_pred CCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEE
Q 000673 484 QDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR 563 (1358)
Q Consensus 484 ~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~ 563 (1358)
.+.+.+|+-++. .++..|.-...+|.+..|++...| +++|+.|+.|+|.++ .+++.+
T Consensus 34 nG~V~IWnyetq----tmVksfeV~~~PvRa~kfiaRknW----iv~GsDD~~IrVfny---------------nt~ekV 90 (794)
T KOG0276|consen 34 NGDVQIWNYETQ----TMVKSFEVSEVPVRAAKFIARKNW----IVTGSDDMQIRVFNY---------------NTGEKV 90 (794)
T ss_pred cCeeEEEecccc----eeeeeeeecccchhhheeeeccce----EEEecCCceEEEEec---------------ccceee
Confidence 455777887654 455666667788999999999989 999999999999554 478889
Q ss_pred EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCC-CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeE
Q 000673 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1358)
Q Consensus 564 ~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~s-g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l 642 (1358)
+.|..|.+.|.|++.|| .. .+++|+|.|-+|++||.+. ..|.++|.||+..|.+++|.|.. .+.|
T Consensus 91 ~~FeAH~DyIR~iavHP-----t~----P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD-----~ntF 156 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHP-----TL----PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD-----PNTF 156 (794)
T ss_pred EEeeccccceeeeeecC-----CC----CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC-----ccce
Confidence 99999999999999995 33 7999999999999999975 46889999999999999999974 5799
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC--CCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCC
Q 000673 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP--RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1358)
Q Consensus 643 ~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd--~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~ 720 (1358)
+|+|-|++|++|.+....+..++.||...|++|.+-|. ..||++| +| |.+|+|||..|..|++++.||+.
T Consensus 157 aS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg-------aD-D~tiKvWDyQtk~CV~TLeGHt~ 228 (794)
T KOG0276|consen 157 ASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG-------AD-DLTIKVWDYQTKSCVQTLEGHTN 228 (794)
T ss_pred eeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec-------CC-CceEEEeecchHHHHHHhhcccc
Confidence 99999999999999999999999999999999999764 4699953 33 59999999999999999999999
Q ss_pred ceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 721 HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 721 ~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
.|..+.|.++. +.+++|+ +|||+|+|+.+
T Consensus 229 Nvs~v~fhp~l-piiisgs----------------EDGTvriWhs~ 257 (794)
T KOG0276|consen 229 NVSFVFFHPEL-PIIISGS----------------EDGTVRIWNSK 257 (794)
T ss_pred cceEEEecCCC-cEEEEec----------------CCccEEEecCc
Confidence 99988777665 4567776 59999999865
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.90 E-value=6.2e-21 Score=200.46 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=109.3
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
++.+..-|..++|+.... .....-+++..|+.|++.++...++ ||+ ++|+++|.|.+++||+
T Consensus 182 l~a~nnkG~cyvW~l~~~---------~~~s~l~P~~k~~ah~~~il~C~lS-----Pd~----k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNH---------QTASELEPVHKFQAHNGHILRCLLS-----PDV----KYLATCSSDKTVKIWN 243 (311)
T ss_pred EEEecCCccEEEEEccCC---------CccccceEhhheecccceEEEEEEC-----CCC----cEEEeecCCceEEEEe
Confidence 677777788888665421 1233455788899999999999998 788 9999999999999999
Q ss_pred CCCC-cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000673 608 LGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1358)
Q Consensus 608 l~sg-~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~s 678 (1358)
++.. +...++.+|...|+.++||.| |++|++++.|+++++||++.++.++.+.||.....+++.+
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~d------g~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSAD------GEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccC------ccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9887 677889999999999999999 9999999999999999999999999999998777777654
No 33
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=7.8e-22 Score=217.98 Aligned_cols=160 Identities=21% Similarity=0.262 Sum_probs=131.9
Q ss_pred ecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEecccc
Q 000673 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~ 583 (1358)
.+.||+.+|.++.+.+.. -+.+++.|.+|+. ||+.++.....+.+ ....+|+.++
T Consensus 255 tl~GHt~~Vs~V~w~d~~-----v~yS~SwDHTIk~---------------WDletg~~~~~~~~-~ksl~~i~~~---- 309 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSDAT-----VIYSVSWDHTIKV---------------WDLETGGLKSTLTT-NKSLNCISYS---- 309 (423)
T ss_pred EecccccceeeEEEcCCC-----ceEeecccceEEE---------------EEeecccceeeeec-CcceeEeecc----
Confidence 346688888887754422 2788999999999 55667777777765 4688999998
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEeCCCCc---EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc
Q 000673 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1358)
Q Consensus 584 ~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~---~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~ 660 (1358)
|.. ++|++||.|..+++||.+++. ..++|.+|.+.|.++.|+|.+ ...|+||+.|+++++||+|+.+
T Consensus 310 -~~~----~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~-----~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 310 -PLS----KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN-----EFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred -ccc----ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC-----ceEEEEEecCCeEEEEEeccCC
Confidence 444 899999999999999998764 457899999999999999984 4789999999999999999988
Q ss_pred -EEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 661 -VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 661 -~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
++..+.+|...|.++.|. ++.++++|+ +| ++|||+.-.
T Consensus 380 ~plydI~~h~DKvl~vdW~-~~~~IvSGG------aD--~~l~i~~~~ 418 (423)
T KOG0313|consen 380 APLYDIAGHNDKVLSVDWN-EGGLIVSGG------AD--NKLRIFKGS 418 (423)
T ss_pred CcceeeccCCceEEEEecc-CCceEEecc------Cc--ceEEEeccc
Confidence 999999999999999998 566788543 33 899998653
No 34
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=9.8e-23 Score=218.93 Aligned_cols=251 Identities=18% Similarity=0.158 Sum_probs=200.5
Q ss_pred CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEe
Q 000673 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1358)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~s 579 (1358)
.+...|.||.+.|..+...+.... +.+++.|.+.+| |.+++|.|+..+.||.+.|+|+.||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi----~gtASADhTA~i---------------Ws~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPI----CGTASADHTARI---------------WSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred eehhhhcccccceeeehhhcCCcc----eeecccccceeE---------------EeeccccceeeecccccceeeEEec
Confidence 455667889998888654333332 666677777777 5688999999999999999999998
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEeCC------C------------------------------C----cEEEEEec
Q 000673 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLG------S------------------------------G----NLITVMHH 619 (1358)
Q Consensus 580 p~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~------s------------------------------g----~~l~~~~~ 619 (1358)
+.+ .+++++|.|++..||... . | .++..|.+
T Consensus 200 -----~s~----~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg 270 (481)
T KOG0300|consen 200 -----NSG----LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG 270 (481)
T ss_pred -----ccc----ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec
Confidence 556 899999999999999621 1 0 14668999
Q ss_pred CCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCC
Q 000673 620 HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1358)
Q Consensus 620 H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~Dg 699 (1358)
|.+.|.+..|-.. |+.++++++|++..+||+++|+++..+.||....+.++-+|+.+++++.+ .|.
T Consensus 271 H~~vV~a~dWL~g------g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsS--------rDt 336 (481)
T KOG0300|consen 271 HRAVVSACDWLAG------GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSS--------RDT 336 (481)
T ss_pred cccceEehhhhcC------cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEec--------cCc
Confidence 9999999999887 89999999999999999999999999999999999999999999988533 358
Q ss_pred eEEEEECCC-CeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCcccccccccCC
Q 000673 700 VLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTIS 778 (1358)
Q Consensus 700 tV~vWd~~t-g~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~~~~~~~~~~ 778 (1358)
+.|+||++. -+.+.+|+||++.|+...|.. +..+++|+ .|.|+|+|+++++..+++..+..
T Consensus 337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~--dd~vVSgS----------------DDrTvKvWdLrNMRsplATIRtd 398 (481)
T KOG0300|consen 337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNT--DDRVVSGS----------------DDRTVKVWDLRNMRSPLATIRTD 398 (481)
T ss_pred eeEeccchhhcceeeeecccccceeEEEEec--CCceeecC----------------CCceEEEeeeccccCcceeeecC
Confidence 999999985 367899999999999998873 23455554 49999999999999999988876
Q ss_pred CCCccccccCCCCCCCCCCccccccccccccccCCCCCcEEEEeecccc
Q 000673 779 EPSASHVRKGNSGKPSLNTRIGLQRKKQTIKCSCPYPGIATLSFDLASL 827 (1358)
Q Consensus 779 ~p~~~~~~~g~~~~~~~~s~~~~~~~~~~ik~~~~~~~~~il~fd~e~l 827 (1358)
.|..- -..+..+ ||- +-|.|+.++.+||+..-
T Consensus 399 S~~NR------------vavs~g~----~iI-AiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 399 SPANR------------VAVSKGH----PII-AIPHDNRQVRLFDLNGN 430 (481)
T ss_pred Cccce------------eEeecCC----ceE-EeccCCceEEEEecCCC
Confidence 65411 0111111 331 34789999999999754
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=2.4e-20 Score=209.51 Aligned_cols=140 Identities=26% Similarity=0.395 Sum_probs=121.9
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
++++..||.|++|+ ..+++....+..|.+.|.++.|+ |++ +.+++++.|+.|++||
T Consensus 150 l~~~~~~~~i~i~d---------------~~~~~~~~~~~~~~~~i~~~~~~-----~~~----~~l~~~~~~~~i~i~d 205 (289)
T cd00200 150 VASSSQDGTIKLWD---------------LRTGKCVATLTGHTGEVNSVAFS-----PDG----EKLLSSSSDGTIKLWD 205 (289)
T ss_pred EEEEcCCCcEEEEE---------------ccccccceeEecCccccceEEEC-----CCc----CEEEEecCCCcEEEEE
Confidence 55555688888843 44555677888999999999998 666 7899999999999999
Q ss_pred CCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEE
Q 000673 608 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687 (1358)
Q Consensus 608 l~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g 687 (1358)
+.+++.+..+..|.++|.++.|+|+ +.++++++.|+.|++||+++++.+..+.+|...+.+++|+|++.+|+++
T Consensus 206 ~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 206 LSTGKCLGTLRGHENGVNSVAFSPD------GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred CCCCceecchhhcCCceEEEEEcCC------CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 9999999999899999999999998 7889998889999999999999999999999999999999999999954
Q ss_pred ecCCccccCCCCeEEEEE
Q 000673 688 CRDHSRTSDAVDVLFIWD 705 (1358)
Q Consensus 688 ~~d~sgssD~DgtV~vWd 705 (1358)
+. |+.|++|+
T Consensus 280 ~~--------d~~i~iw~ 289 (289)
T cd00200 280 SA--------DGTIRIWD 289 (289)
T ss_pred cC--------CCeEEecC
Confidence 32 48999996
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.88 E-value=3.3e-20 Score=204.52 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=100.0
Q ss_pred cCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC
Q 000673 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1358)
Q Consensus 568 gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~ 647 (1358)
+|...+.|+.+.|.. ..-++.+.|+.||+|.|||+.+.++.+. ..|..+|+.+.|-++ .++++++.
T Consensus 281 ~~e~~~esve~~~~s------s~lpL~A~G~vdG~i~iyD~a~~~~R~~-c~he~~V~~l~w~~t-------~~l~t~c~ 346 (399)
T KOG0296|consen 281 SQEELDESVESIPSS------SKLPLAACGSVDGTIAIYDLAASTLRHI-CEHEDGVTKLKWLNT-------DYLLTACA 346 (399)
T ss_pred cchhhhhhhhhcccc------cccchhhcccccceEEEEecccchhhee-ccCCCceEEEEEcCc-------chheeecc
Confidence 567777788776421 1237999999999999999988776554 478889999999875 78999999
Q ss_pred CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 648 D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
||.|+.||.|+|+++..+.||...|.+++.+|+.+++++++. |++.+|++..
T Consensus 347 ~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~--------D~~a~VF~v~ 398 (399)
T KOG0296|consen 347 NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD--------DNTALVFEVP 398 (399)
T ss_pred CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecC--------CCeEEEEecC
Confidence 999999999999999999999999999999999999996432 4899999864
No 37
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=2.1e-21 Score=238.07 Aligned_cols=231 Identities=19% Similarity=0.272 Sum_probs=191.1
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
+..+..+.++.+|.....+. .+...+.+|...|..+.+.++..+ +++|+.|++|++|+ +
T Consensus 174 l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~----l~s~s~D~tiriwd---------------~ 232 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSY----LLSGSDDKTLRIWD---------------L 232 (456)
T ss_pred EEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcE----EEEecCCceEEEee---------------c
Confidence 45566677888888855442 244555889999999998888877 99999999999944 4
Q ss_pred -CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCC
Q 000673 558 -NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1358)
Q Consensus 558 -~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~ 636 (1358)
..+.+++++.||...|++++|+ |+| +.++||+.|++|++||+.+++++..+.+|.++|++++|+++
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~-----p~g----~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d---- 299 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFS-----PDG----NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD---- 299 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEec-----CCC----CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC----
Confidence 3457899999999999999998 777 99999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCc--EEEEecCCCCC--cEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEE
Q 000673 637 PWSDCFLSVGEDFSVALASLETLR--VERMFPGHPNY--PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1358)
Q Consensus 637 ~~g~~l~S~s~D~tV~lwdl~~~~--~~~~l~gH~~~--V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~ 712 (1358)
++.+++++.|+.|++||+.++. ++..+.++... ++.+.|+|++.++++++. |+++++||++.+.+.
T Consensus 300 --~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~--------d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 300 --GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL--------DRTLKLWDLRSGKSV 369 (456)
T ss_pred --CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC--------CCeEEEEEccCCcce
Confidence 8999999999999999999999 77888888766 899999999999996543 389999999999999
Q ss_pred EEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 713 RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 713 ~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
+.+.+|...+.+ .|+... .+ .|.+.+++. .|+.+++|+..
T Consensus 370 ~~~~~~~~~~~~-~~~~~~----~~----~~~~i~sg~-----~d~~v~~~~~~ 409 (456)
T KOG0266|consen 370 GTYTGHSNLVRC-IFSPTL----ST----GGKLIYSGS-----EDGSVYVWDSS 409 (456)
T ss_pred eeecccCCccee-Eecccc----cC----CCCeEEEEe-----CCceEEEEeCC
Confidence 999999977422 132211 11 223444443 49999999875
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=203.42 Aligned_cols=203 Identities=18% Similarity=0.331 Sum_probs=172.4
Q ss_pred cccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccc
Q 000673 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1358)
Q Consensus 477 ~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d 556 (1358)
++-..++...++++|+..+.+ .+...|.+|+..|+++-|-.++.+ +++|++||+++||+
T Consensus 53 ~~LAaa~~qhvRlyD~~S~np--~Pv~t~e~h~kNVtaVgF~~dgrW----MyTgseDgt~kIWd--------------- 111 (311)
T KOG0315|consen 53 KDLAAAGNQHVRLYDLNSNNP--NPVATFEGHTKNVTAVGFQCDGRW----MYTGSEDGTVKIWD--------------- 111 (311)
T ss_pred chhhhccCCeeEEEEccCCCC--CceeEEeccCCceEEEEEeecCeE----EEecCCCceEEEEe---------------
Confidence 344567778899999987766 477889999999999999999999 99999999999944
Q ss_pred cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC-------------------------
Q 000673 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG------------------------- 611 (1358)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg------------------------- 611 (1358)
+....+.+.| .|..+|+++..| |+. ..|++|.++|.|++||+...
T Consensus 112 lR~~~~qR~~-~~~spVn~vvlh-----pnQ----teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 112 LRSLSCQRNY-QHNSPVNTVVLH-----PNQ----TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred ccCcccchhc-cCCCCcceEEec-----CCc----ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 4444444444 588999999998 444 78999999999999999642
Q ss_pred ------------------------cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC-cEEEEec
Q 000673 612 ------------------------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFP 666 (1358)
Q Consensus 612 ------------------------~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~-~~~~~l~ 666 (1358)
+++++|+.|.+.+..+.+||| +++|+++|.|+++++|++++. +....+.
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd------~k~lat~ssdktv~iwn~~~~~kle~~l~ 255 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD------VKYLATCSSDKTVKIWNTDDFFKLELVLT 255 (311)
T ss_pred EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC------CcEEEeecCCceEEEEecCCceeeEEEee
Confidence 124567889999999999999 899999999999999999988 7778899
Q ss_pred CCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEE
Q 000673 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1358)
Q Consensus 667 gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~ 724 (1358)
+|..+++.++|+.|+.||++| ++| +++|+||++.|+.++.+.||....++
T Consensus 256 gh~rWvWdc~FS~dg~YlvTa------ssd--~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 256 GHQRWVWDCAFSADGEYLVTA------SSD--HTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred cCCceEEeeeeccCccEEEec------CCC--CceeecccccCceeeecCCcccccEE
Confidence 999999999999999999964 444 89999999999999999999866643
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.88 E-value=3.6e-20 Score=243.00 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=113.7
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCce-EEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV-SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~-~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lW 606 (1358)
+++|+.||.|++|+.. ++. +...+.+|...|+++.|. ++ .+|+||+.|++|++|
T Consensus 633 latgs~dg~I~iwD~~---------------~~~~~~~~~~~h~~~V~~v~f~------~~----~~lvs~s~D~~ikiW 687 (793)
T PLN00181 633 LAFGSADHKVYYYDLR---------------NPKLPLCTMIGHSKTVSYVRFV------DS----STLVSSSTDNTLKLW 687 (793)
T ss_pred EEEEeCCCeEEEEECC---------------CCCccceEecCCCCCEEEEEEe------CC----CEEEEEECCCEEEEE
Confidence 6778888888884432 222 456778999999999995 34 789999999999999
Q ss_pred eCCC------CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEe-------------cC
Q 000673 607 DLGS------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-------------PG 667 (1358)
Q Consensus 607 Dl~s------g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l-------------~g 667 (1358)
|+.. +++++++.+|...++++.|+|+ +.+|++|+.|++|++|+.....++..+ ..
T Consensus 688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~------~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVS------DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred eCCCCccccCCcceEEEcCCCCCeeEEEEcCC------CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence 9974 3678899999999999999999 899999999999999998766544222 23
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 668 H~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
|...|.+++|+|++.+|++|+. ||.|+|||+
T Consensus 762 ~~~~V~~v~ws~~~~~lva~~~--------dG~I~i~~~ 792 (793)
T PLN00181 762 ASQFISSVCWRGQSSTLVAANS--------TGNIKILEM 792 (793)
T ss_pred CCcEEEEEEEcCCCCeEEEecC--------CCcEEEEec
Confidence 4557899999999999996443 499999997
No 40
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=1.3e-22 Score=237.95 Aligned_cols=329 Identities=16% Similarity=0.195 Sum_probs=223.0
Q ss_pred cccCCccccccccCCCCCCCceeecccCCCcEEE-EEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCC
Q 000673 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSS-SMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1358)
Q Consensus 481 t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts-~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t 559 (1358)
.+-+.++++|+....... ....+.+|.+-|.. ..|.....+ .++.|+.|+.|.++. ...
T Consensus 31 ~sRd~t~~vw~~~~~~~l--~~~~~~~~~g~i~~~i~y~e~~~~---~l~~g~~D~~i~v~~---------------~~~ 90 (745)
T KOG0301|consen 31 GSRDGTVKVWAKKGKQYL--ETHAFEGPKGFIANSICYAESDKG---RLVVGGMDTTIIVFK---------------LSQ 90 (745)
T ss_pred cCCCCceeeeeccCcccc--cceecccCcceeeccceeccccCc---ceEeecccceEEEEe---------------cCC
Confidence 344667888887554332 22345556555544 444432222 389999999999844 345
Q ss_pred ceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCC
Q 000673 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1358)
Q Consensus 560 ~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g 639 (1358)
..+..+|+||+..|.|++.. -++ .++|||+|.|+++|-. +++...+.+|...|+++++-|+
T Consensus 91 ~~P~~~LkgH~snVC~ls~~-----~~~-----~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e------- 151 (745)
T KOG0301|consen 91 AEPLYTLKGHKSNVCSLSIG-----EDG-----TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPE------- 151 (745)
T ss_pred CCchhhhhccccceeeeecC-----CcC-----ceEecccccceEEecc--hhhhcccCCcchheeeeeecCC-------
Confidence 66899999999999999864 333 4999999999999964 7778889999999999999998
Q ss_pred CeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCC
Q 000673 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1358)
Q Consensus 640 ~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~ 719 (1358)
+.++|||.|++|++|.- ++++++|.||...|..+++-|++.++- .++||.|+.|++ +|++++++.||+
T Consensus 152 ~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flS---------csNDg~Ir~w~~-~ge~l~~~~ght 219 (745)
T KOG0301|consen 152 NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLS---------CSNDGSIRLWDL-DGEVLLEMHGHT 219 (745)
T ss_pred CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEe---------ecCCceEEEEec-cCceeeeeeccc
Confidence 48999999999999964 889999999999999999999888774 334699999999 899999999999
Q ss_pred CceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCcccccccccCCCCCccccccCCCCCCCCCCcc
Q 000673 720 SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFSTISEPSASHVRKGNSGKPSLNTRI 799 (1358)
Q Consensus 720 ~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~s~~ 799 (1358)
+.+.+.... ...+..+++.+|+|+|+|+...+.|.|+.|.+..........|+ .+...+.-
T Consensus 220 n~vYsis~~-----------------~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG 280 (745)
T KOG0301|consen 220 NFVYSISMA-----------------LSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGD--IVVGGSDG 280 (745)
T ss_pred eEEEEEEec-----------------CCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCC--EEEeccCc
Confidence 998554311 12345567778999999999999999999988776644433222 22212221
Q ss_pred ccc-cccccccccCCCCCcEEEEeecccccccc--ccccccccCCCccccccccccCcccCCCCccccCCCCCCCCCCCC
Q 000673 800 GLQ-RKKQTIKCSCPYPGIATLSFDLASLMFPY--QMHESAAKNGDKQENFTTMEHGTETAGPNAMTAADGSNGHSMSTD 876 (1358)
Q Consensus 800 ~~~-~~~~~ik~~~~~~~~~il~fd~e~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 876 (1358)
+.+ |..-+-|.+ +..-+--||.+. ..++ ...+.|-...+.+.+..... ..++.++|.+..++++ ..+.++|
T Consensus 281 ~VrVfT~~k~R~A---s~evl~afd~~v-~s~~~~kt~~~g~v~~~~lPg~e~L~-spGt~dGq~~~Vr~~~-~v~ayqw 354 (745)
T KOG0301|consen 281 RVRVFTVDKDRKA---SDEVLKAFDAEV-VSQISSKTEEVGGVKKDDLPGLEILK-SPGTRDGQTKVVRDGE-NVEAYQW 354 (745)
T ss_pred eEEEEEecccccC---CHHHHHHHHHHH-HhhhhhhhhhhCccccccCCchhhhc-CCCCCCCcEEEEEcCC-cceeEEe
Confidence 111 111111100 100111122222 1111 11222211222333322222 2346799999988866 6678999
Q ss_pred chhhhhhhh
Q 000673 877 TIEEHTWIK 885 (1358)
Q Consensus 877 ~~~~~~~~~ 885 (1358)
+.+|.+|+|
T Consensus 355 s~~e~r~ik 363 (745)
T KOG0301|consen 355 SNGEWRWIK 363 (745)
T ss_pred ecccceeec
Confidence 999999988
No 41
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=6.3e-21 Score=211.91 Aligned_cols=85 Identities=22% Similarity=0.300 Sum_probs=76.5
Q ss_pred CCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCc
Q 000673 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1358)
Q Consensus 14 ~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1358)
.|+.-|=-+.||++|++|||++.|.+..+|++.. ....+..+++.||..+|..+.+
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~--d~~~kl~~tlvgh~~~V~yi~w---------------------- 277 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY--DVHFKLKKTLVGHSQPVSYIMW---------------------- 277 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec--CcceeeeeeeecccCceEEEEE----------------------
Confidence 4667788999999999999999999999999986 4557788999999999999966
Q ss_pred ccccccCCCCeEEEeeCCCeEEEEECCCCceEEE
Q 000673 94 VMGKSSLDNGALISACTDGVLCVWSRSSGHCRRR 127 (1358)
Q Consensus 94 ~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~ 127 (1358)
|||.++|++++.|..+++||+.+|.|+..
T Consensus 278 -----SPDdryLlaCg~~e~~~lwDv~tgd~~~~ 306 (519)
T KOG0293|consen 278 -----SPDDRYLLACGFDEVLSLWDVDTGDLRHL 306 (519)
T ss_pred -----CCCCCeEEecCchHheeeccCCcchhhhh
Confidence 89999999999999999999999998753
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.87 E-value=1.8e-21 Score=212.88 Aligned_cols=187 Identities=18% Similarity=0.203 Sum_probs=171.3
Q ss_pred CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEe
Q 000673 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1358)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~s 579 (1358)
.+...+++|.+.|.|+.+-+.+.| +++|+.|++|.| ||+.+|+...+|.||...|..++++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~w----f~tgs~DrtikI---------------wDlatg~LkltltGhi~~vr~vavS 202 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEW----FATGSADRTIKI---------------WDLATGQLKLTLTGHIETVRGVAVS 202 (460)
T ss_pred eehhhhhhccceEEEEeeCCCcee----EEecCCCceeEE---------------EEcccCeEEEeecchhheeeeeeec
Confidence 455677999999999999999999 999999999999 5678999999999999999999998
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC
Q 000673 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1358)
Q Consensus 580 p~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~ 659 (1358)
+.| .+++|++.|+.|+.||+...+.++.+.||-..|.|++.+|. -+.+++|+.|.++++||+++.
T Consensus 203 ~rH---------pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT------ldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 203 KRH---------PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT------LDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred ccC---------ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccc------ceeEEecCCcceEEEeeeccc
Confidence 422 79999999999999999999999999999999999999998 789999999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeee
Q 000673 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1358)
Q Consensus 660 ~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~ 728 (1358)
..+..+.||.+.|..|.+.|.+..+++|+ . |++|++||++.|+...++..|.-.|.+....
T Consensus 268 ~~V~~l~GH~~~V~~V~~~~~dpqvit~S------~--D~tvrlWDl~agkt~~tlt~hkksvral~lh 328 (460)
T KOG0285|consen 268 ASVHVLSGHTNPVASVMCQPTDPQVITGS------H--DSTVRLWDLRAGKTMITLTHHKKSVRALCLH 328 (460)
T ss_pred ceEEEecCCCCcceeEEeecCCCceEEec------C--CceEEEeeeccCceeEeeecccceeeEEecC
Confidence 99999999999999999999999999543 3 3899999999999999999999888765444
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.2e-20 Score=220.41 Aligned_cols=159 Identities=14% Similarity=0.071 Sum_probs=137.5
Q ss_pred CceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCccc
Q 000673 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1358)
Q Consensus 16 ~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1358)
+.+|..++|+|....|.|+=..|.|.+||.+- ...+..+-+|.+||..+.|
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM-----~tli~rFdeHdGpVRgv~F------------------------ 59 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-----GTLIDRFDEHDGPVRGVDF------------------------ 59 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhh-----hhHHhhhhccCCccceeee------------------------
Confidence 56899999999999999999999999999995 4667788899999999966
Q ss_pred ccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCccccccccccccccc
Q 000673 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1358)
Q Consensus 96 ~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~~ 175 (1358)
.|++.++|||+.|-.|+||+....+|+.+...| --.|++.-.-..+.++..++
T Consensus 60 ---H~~qplFVSGGDDykIkVWnYk~rrclftL~GH-----lDYVRt~~FHheyPWIlSAS------------------- 112 (1202)
T KOG0292|consen 60 ---HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH-----LDYVRTVFFHHEYPWILSAS------------------- 112 (1202)
T ss_pred ---cCCCCeEEecCCccEEEEEecccceehhhhccc-----cceeEEeeccCCCceEEEcc-------------------
Confidence 788999999999999999999999999876655 34444444445677777776
Q ss_pred ccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCc
Q 000673 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKES 251 (1358)
Q Consensus 176 ~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~ 251 (1358)
++.+|+|||-.+.+++.++.+ |-..|-|..|.+. ++.++++|.|-++||||+.+-
T Consensus 113 ------------DDQTIrIWNwqsr~~iavltG---HnHYVMcAqFhpt------EDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 113 ------------DDQTIRIWNWQSRKCIAVLTG---HNHYVMCAQFHPT------EDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred ------------CCCeEEEEeccCCceEEEEec---CceEEEeeccCCc------cceEEEecccceEEEEeecch
Confidence 689999999999999999999 8888988888743 679999999999999999974
No 44
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=2.4e-21 Score=237.46 Aligned_cols=223 Identities=22% Similarity=0.210 Sum_probs=188.1
Q ss_pred cccccccCCccccccccCCCCCCCceee-cccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcc
Q 000673 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDD-FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1358)
Q Consensus 477 ~l~~t~~~s~i~~W~~~~~~~~~~~~~~-~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~ 555 (1358)
.+...+.+.++++|+..+. ..... +.+|.+.|.++.+.....+ +++|+.|.++++ |
T Consensus 220 ~~~~~s~~~tl~~~~~~~~----~~i~~~l~GH~g~V~~l~~~~~~~~----lvsgS~D~t~rv---------------W 276 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNG----YLILTRLVGHFGGVWGLAFPSGGDK----LVSGSTDKTERV---------------W 276 (537)
T ss_pred eEEecCCCceeEEeecccc----eEEEeeccCCCCCceeEEEecCCCE----EEEEecCCcEEe---------------E
Confidence 4566777888999998776 33444 8999999999886664444 999999999999 5
Q ss_pred ccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCC
Q 000673 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1358)
Q Consensus 556 d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~ 635 (1358)
|..+|+|.++|.||.+.|.|+...+ .++++||.|.+|++|++.++.+++.+.+|.++|+++...
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~~-----------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~----- 340 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTIDP-----------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD----- 340 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEccC-----------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-----
Confidence 5779999999999999999998752 689999999999999999999999999999999999997
Q ss_pred CCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC-eEEEE
Q 000673 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERV 714 (1358)
Q Consensus 636 ~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg-~~~~~ 714 (1358)
+..+++|+.|++|++||+.+++|+..+.||..+|+++.+.+. ..+++|+ .| ++|++||++++ +++.+
T Consensus 341 ---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs------~D--~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 341 ---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS------LD--TTIKVWDLRTKRKCIHT 408 (537)
T ss_pred ---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee------ec--cceEeecCCchhhhhhh
Confidence 469999999999999999999999999999999999988765 7788544 33 89999999999 99999
Q ss_pred EeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCcc
Q 000673 715 LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1358)
Q Consensus 715 l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~ 769 (1358)
+.+|.+-+..+.+ .++..+++.+ |+++|+||..+.+
T Consensus 409 l~~h~~~v~~l~~--------------~~~~Lvs~~a-----D~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 409 LQGHTSLVSSLLL--------------RDNFLVSSSA-----DGTIKLWDAEEGE 444 (537)
T ss_pred hcCCccccccccc--------------ccceeEeccc-----cccEEEeecccCc
Confidence 9999977743321 2234444444 9999999876543
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.87 E-value=2.9e-22 Score=222.81 Aligned_cols=224 Identities=16% Similarity=0.097 Sum_probs=181.9
Q ss_pred ccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCC
Q 000673 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1358)
Q Consensus 480 ~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t 559 (1358)
..+..+...+|+...- .-...+..|..+|+++.+.++..| +++|..+|.|++|.-+ ..
T Consensus 113 tgs~SGEFtLWNg~~f----nFEtilQaHDs~Vr~m~ws~~g~w----miSgD~gG~iKyWqpn--mn------------ 170 (464)
T KOG0284|consen 113 TGSQSGEFTLWNGTSF----NFETILQAHDSPVRTMKWSHNGTW----MISGDKGGMIKYWQPN--MN------------ 170 (464)
T ss_pred eecccccEEEecCcee----eHHHHhhhhcccceeEEEccCCCE----EEEcCCCceEEecccc--hh------------
Confidence 3344445566765211 111223679999999998899888 9999999999994422 11
Q ss_pred ceEEEEEecCC-CCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCC
Q 000673 560 HVSRQYFLGHT-GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1358)
Q Consensus 560 ~~~~~~l~gH~-~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~ 638 (1358)
.++.+++|. ..|++++|+ |+. ..++|+|.|++|+|||....+..+.+.||.-.|.+++|+|.
T Consensus 171 --nVk~~~ahh~eaIRdlafS-----pnD----skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~------ 233 (464)
T KOG0284|consen 171 --NVKIIQAHHAEAIRDLAFS-----PND----SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT------ 233 (464)
T ss_pred --hhHHhhHhhhhhhheeccC-----CCC----ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc------
Confidence 345566665 999999998 444 79999999999999999999988999999999999999999
Q ss_pred CCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCC
Q 000673 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1358)
Q Consensus 639 g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH 718 (1358)
...++++|.|..|++||.++++|+.++.+|.+.|..+.|+|++++|++++. |.+++++|+++-+.+++++||
T Consensus 234 kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk--------D~~~kv~DiR~mkEl~~~r~H 305 (464)
T KOG0284|consen 234 KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK--------DQSCKVFDIRTMKELFTYRGH 305 (464)
T ss_pred cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC--------CceEEEEehhHhHHHHHhhcc
Confidence 679999999999999999999999999999999999999999999996544 489999999999999999999
Q ss_pred CCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 719 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 719 ~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
...++.+.+.+-.. +.+.+...|+.+..|.+.
T Consensus 306 kkdv~~~~WhP~~~----------------~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 306 KKDVTSLTWHPLNE----------------SLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred hhhheeeccccccc----------------cceeeccCCCceEEEecc
Confidence 99999886665322 222333348999999876
No 46
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.87 E-value=1.2e-20 Score=208.64 Aligned_cols=274 Identities=20% Similarity=0.230 Sum_probs=205.3
Q ss_pred CeEEEEecCCCCCCCCcceeEEeecCccce----eeeccccccCCCCcccccccccccCCccccccccCCCCCCCceeec
Q 000673 430 PYISVWSLSQKHSGPGKQCRMVGEGFSFVD----WVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDF 505 (1358)
Q Consensus 430 p~v~vws~~~~~~~~~~~~~~l~~g~~~g~----w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~~~ 505 (1358)
..+++|+..++. .....|...-. |.++.-. .+ .+..++.+.++.+|..............-
T Consensus 125 g~~riWd~~Gk~-------~~~~~Ght~~ik~v~~v~~n~~------~~--~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~ 189 (423)
T KOG0313|consen 125 GTSRIWDLKGKS-------IKTIVGHTGPIKSVAWVIKNSS------SC--LFVSASMDQTLRLWKWNVGENKVKALKVC 189 (423)
T ss_pred CeeEEEecCCce-------EEEEecCCcceeeeEEEecCCc------cc--eEEEecCCceEEEEEecCchhhhhHHhHh
Confidence 348999865542 45555543211 5554311 11 46778889999999987766554444445
Q ss_pred ccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCccc--CCC-CC-------CccccCCceEEEEEecCCCCEEE
Q 000673 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFER--HNS-PG-------ASLKVNSHVSRQYFLGHTGAVLC 575 (1358)
Q Consensus 506 ~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~--~~~-~~-------~~~d~~t~~~~~~l~gH~~~V~~ 575 (1358)
.||...|-++.+.+++.. +++|+.|..|.+|.+..... ... +. .-....++.++.+|.||++.|.+
T Consensus 190 ~GHk~~V~sVsv~~sgtr----~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~ 265 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTR----FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS 265 (423)
T ss_pred cccccceeEEEecCCCCe----EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee
Confidence 699999999887777765 89999999999977221111 000 00 00123356688899999999999
Q ss_pred EEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEE
Q 000673 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1358)
Q Consensus 576 l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwd 655 (1358)
+.|++ . ..+.|+|+|.||+.||+.+|.+..++.+. ...+|+.++|. .+++++||.|+.++|||
T Consensus 266 V~w~d------~----~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~------~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 266 VVWSD------A----TVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPL------SKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEEcC------C----CceEeecccceEEEEEeecccceeeeecC-cceeEeecccc------cceeeecCCCCceeecC
Confidence 99962 3 68999999999999999999998888764 67999999998 79999999999999999
Q ss_pred CCCCc---EEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe-EEEEEeCCCCceEEEeeeccc
Q 000673 656 LETLR---VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGI 731 (1358)
Q Consensus 656 l~~~~---~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~-~~~~l~GH~~~v~~~~~~~~~ 731 (1358)
.+++. ..++|.||.++|.++.|+|...|+++ +|+.| +++++||+|+.. .+..+.||.+.|.++.+...
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~-----S~S~D--~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~- 400 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLV-----SGSYD--NTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG- 400 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEE-----EEecC--CeEEEEEeccCCCcceeeccCCceEEEEeccCC-
Confidence 99763 45789999999999999999888775 23444 999999999876 89999999999987766531
Q ss_pred ccceeecceecCcccccCCccccccCCcEEEEe
Q 000673 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 732 ~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~ 764 (1358)
..+++| ..|.++|+..
T Consensus 401 -~~IvSG----------------GaD~~l~i~~ 416 (423)
T KOG0313|consen 401 -GLIVSG----------------GADNKLRIFK 416 (423)
T ss_pred -ceEEec----------------cCcceEEEec
Confidence 123333 2499999874
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1e-20 Score=232.08 Aligned_cols=202 Identities=22% Similarity=0.316 Sum_probs=172.6
Q ss_pred CCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCce--EEEEEecCCCCEEEEEEeccccCC
Q 000673 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV--SRQYFLGHTGAVLCLAAHRMVGTA 585 (1358)
Q Consensus 508 h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~--~~~~l~gH~~~V~~l~~sp~~~~~ 585 (1358)
+...|++..+.+++.+ +++++.|+.+++|... ..+ ..+.+.+|...|.+++|+ |
T Consensus 158 ~~~sv~~~~fs~~g~~----l~~~~~~~~i~~~~~~---------------~~~~~~~~~l~~h~~~v~~~~fs-----~ 213 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA----LAAASSDGLIRIWKLE---------------GIKSNLLRELSGHTRGVSDVAFS-----P 213 (456)
T ss_pred ccCceEEEEEcCCCCe----EEEccCCCcEEEeecc---------------cccchhhccccccccceeeeEEC-----C
Confidence 3678888887777776 9999999999996652 222 566778999999999998 7
Q ss_pred CCCccCcEEEEEeCCCcEEEEeC-CCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEE
Q 000673 586 KGWSFNEVLVSGSMDCSIRIWDL-GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1358)
Q Consensus 586 dg~~~~~~L~Sgs~D~tI~lWDl-~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~ 664 (1358)
|| +++++|+.|++|++||+ ..+.+++++.+|...|++++|+|+ |+.++||+.|++|++||+++++++..
T Consensus 214 d~----~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~------g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 214 DG----SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD------GNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred CC----cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC------CCEEEEecCCCcEEEEeccCCeEEEe
Confidence 88 89999999999999999 666899999999999999999999 89999999999999999999999999
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe--EEEEEeCCCCc--eEEEeeecccccceeecce
Q 000673 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA--RERVLRGTASH--SMFDHFCKGISMNSISGSV 740 (1358)
Q Consensus 665 l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~--~~~~l~GH~~~--v~~~~~~~~~~~~~~sGs~ 740 (1358)
+.+|.+.|++++|++++.+|++++ .|+.|+|||+.++. +...+.++... +..+.|++
T Consensus 284 l~~hs~~is~~~f~~d~~~l~s~s--------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp----------- 344 (456)
T KOG0266|consen 284 LKGHSDGISGLAFSPDGNLLVSAS--------YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP----------- 344 (456)
T ss_pred eeccCCceEEEEECCCCCEEEEcC--------CCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-----------
Confidence 999999999999999999999533 25999999999999 67899998866 66666664
Q ss_pred ecCcccccCCccccccCCcEEEEeCCCc
Q 000673 741 LNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1358)
Q Consensus 741 l~g~~~~s~~l~~~~~D~tvr~W~~~~~ 768 (1358)
+|.+.+.... |+++|+|+++..
T Consensus 345 -~~~~ll~~~~-----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 345 -NGKYLLSASL-----DRTLKLWDLRSG 366 (456)
T ss_pred -CCcEEEEecC-----CCeEEEEEccCC
Confidence 3344444444 999999998643
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.86 E-value=4.4e-21 Score=209.92 Aligned_cols=201 Identities=17% Similarity=0.231 Sum_probs=179.8
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
+.+++.+.++++||+... ++..++.||-..|..+.+..-..| ++++++|+.|+. ||+
T Consensus 166 f~tgs~DrtikIwDlatg----~LkltltGhi~~vr~vavS~rHpY----lFs~gedk~VKC---------------wDL 222 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLATG----QLKLTLTGHIETVRGVAVSKRHPY----LFSAGEDKQVKC---------------WDL 222 (460)
T ss_pred EEecCCCceeEEEEcccC----eEEEeecchhheeeeeeecccCce----EEEecCCCeeEE---------------Eec
Confidence 445677889999999865 778888999999999888777777 999999999999 556
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCC
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~ 637 (1358)
+..+.++.+.||-..|.||+.|| .- ..|+||+.|.++|+||+++...++.+.||..+|.++.+.|-
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhP-----Tl----dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~----- 288 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHP-----TL----DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT----- 288 (460)
T ss_pred hhhhhHHHhccccceeEEEeccc-----cc----eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC-----
Confidence 67778899999999999999995 33 79999999999999999999999999999999999999987
Q ss_pred CCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeC
Q 000673 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1358)
Q Consensus 638 ~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~G 717 (1358)
.-.+++||.|++|++||++.|+...++..|...|.+++.+|....++++| .| .|+-|++..|+.+..+.|
T Consensus 289 -dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas------~d---nik~w~~p~g~f~~nlsg 358 (460)
T KOG0285|consen 289 -DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS------PD---NIKQWKLPEGEFLQNLSG 358 (460)
T ss_pred -CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC------Cc---cceeccCCccchhhcccc
Confidence 57899999999999999999999999999999999999999999998533 33 899999999999999999
Q ss_pred CCCceEEE
Q 000673 718 TASHSMFD 725 (1358)
Q Consensus 718 H~~~v~~~ 725 (1358)
|++-+..+
T Consensus 359 h~~iintl 366 (460)
T KOG0285|consen 359 HNAIINTL 366 (460)
T ss_pred ccceeeee
Confidence 99877655
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.3e-20 Score=213.92 Aligned_cols=185 Identities=18% Similarity=0.211 Sum_probs=159.6
Q ss_pred eecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
..|..|.+.|.++++=|...| +++++.|-.|++|+|+. ...+.++|.||+..|.+++|+|
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~----vLtsSDDm~iKlW~we~--------------~wa~~qtfeGH~HyVMqv~fnP-- 150 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPY----VLTSSDDMTIKLWDWEN--------------EWACEQTFEGHEHYVMQVAFNP-- 150 (794)
T ss_pred EEeeccccceeeeeecCCCCe----EEecCCccEEEEeeccC--------------ceeeeeEEcCcceEEEEEEecC--
Confidence 445667788888776666777 99999999999998873 2347899999999999999996
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEE
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~ 662 (1358)
.|. +.++|+|.|+||++|.+.+..+..++.+|...|+|+.+-+.+. .-+++||++|.+|++||.++..|+
T Consensus 151 --kD~----ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd----kpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 151 --KDP----NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD----KPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred --CCc----cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC----cceEEecCCCceEEEeecchHHHH
Confidence 344 8999999999999999999999999999999999999988621 349999999999999999999999
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEE
Q 000673 663 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFD 725 (1358)
Q Consensus 663 ~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~ 725 (1358)
+++.||.+-|..+.|+|.-..+++|+. ||+||||+-.|.+++.++.-.-..+.++
T Consensus 221 ~TLeGHt~Nvs~v~fhp~lpiiisgsE--------DGTvriWhs~Ty~lE~tLn~gleRvW~I 275 (794)
T KOG0276|consen 221 QTLEGHTNNVSFVFFHPELPIIISGSE--------DGTVRIWNSKTYKLEKTLNYGLERVWCI 275 (794)
T ss_pred HHhhcccccceEEEecCCCcEEEEecC--------CccEEEecCcceehhhhhhcCCceEEEE
Confidence 999999999999999999999996543 4999999999988888876555566444
No 50
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.85 E-value=5.4e-21 Score=212.81 Aligned_cols=216 Identities=16% Similarity=0.195 Sum_probs=168.8
Q ss_pred ccccccccCCCCCCCceeecccC-CCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEE
Q 000673 486 TVPRSEHVDSRQAGDGRDDFVHK-EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1358)
Q Consensus 486 ~i~~W~~~~~~~~~~~~~~~~~h-~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~ 564 (1358)
.|++|+..-+ .+..+..| ...|++++|.+.+. ++++++.||+|+||+|. ..+...
T Consensus 161 ~iKyWqpnmn-----nVk~~~ahh~eaIRdlafSpnDs----kF~t~SdDg~ikiWdf~---------------~~kee~ 216 (464)
T KOG0284|consen 161 MIKYWQPNMN-----NVKIIQAHHAEAIRDLAFSPNDS----KFLTCSDDGTIKIWDFR---------------MPKEER 216 (464)
T ss_pred eEEecccchh-----hhHHhhHhhhhhhheeccCCCCc----eeEEecCCCeEEEEecc---------------CCchhh
Confidence 4566654321 22333444 47888888555444 38999999999997664 333557
Q ss_pred EEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEE
Q 000673 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1358)
Q Consensus 565 ~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S 644 (1358)
.|.||.-.|.|++||| .. .+++|||.|..|++||.++|.|+.++.+|...|..+.|+|+ +++|++
T Consensus 217 vL~GHgwdVksvdWHP-----~k----gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n------~N~Llt 281 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHP-----TK----GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN------GNWLLT 281 (464)
T ss_pred eeccCCCCcceeccCC-----cc----ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC------CCeeEE
Confidence 7899999999999996 22 69999999999999999999999999999999999999999 899999
Q ss_pred EeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEE-EEeCCCCceE
Q 000673 645 VGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER-VLRGTASHSM 723 (1358)
Q Consensus 645 ~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~-~l~GH~~~v~ 723 (1358)
+|.|.+++++|+++.+.++.+++|...|+++.|+|-..-|.+ +|+. ||.|..|.+..-+.+- .-.+|...|.
T Consensus 282 ~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lft-----sgg~--Dgsvvh~~v~~~~p~~~i~~AHd~~iw 354 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFT-----SGGS--DGSVVHWVVGLEEPLGEIPPAHDGEIW 354 (464)
T ss_pred ccCCceEEEEehhHhHHHHHhhcchhhheeecccccccccee-----eccC--CCceEEEeccccccccCCCccccccee
Confidence 999999999999999999999999999999999996554443 1233 4999999998444433 3357888888
Q ss_pred EEeeecccccceeecceecCcccccCCccccccCCcEEEEe
Q 000673 724 FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 724 ~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~ 764 (1358)
.+.+.+ .+...++|+ .|.++|.|.
T Consensus 355 sl~~hP-lGhil~tgs----------------nd~t~rfw~ 378 (464)
T KOG0284|consen 355 SLAYHP-LGHILATGS----------------NDRTVRFWT 378 (464)
T ss_pred eeeccc-cceeEeecC----------------CCcceeeec
Confidence 887764 222344444 399999995
No 51
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=2.2e-17 Score=187.87 Aligned_cols=487 Identities=12% Similarity=0.080 Sum_probs=289.7
Q ss_pred CCCCceeEEEEEecCCCEEEEEeCCC--------cEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccc
Q 000673 13 TPPSHRVTATSALTQPPTLYTGGSDG--------SILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAE 84 (1358)
Q Consensus 13 ~~p~h~Vtava~Spdg~~LaTGs~DG--------~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~ 84 (1358)
..|+..|.|++++||.-+++||-.-| .+++||..+ ...++++-+-...|+|++|++.
T Consensus 101 ~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~-----L~TL~V~g~f~~GV~~vaFsk~---------- 165 (626)
T KOG2106|consen 101 LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT-----LSTLHVIGFFDRGVTCVAFSKI---------- 165 (626)
T ss_pred cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccc-----ceeeeeeccccccceeeeeccc----------
Confidence 36788899999999999999885555 499999775 5667777766778999999654
Q ss_pred cccccccCcccccccCCCCeEEE--eeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcc
Q 000673 85 HWKAENSSNVMGKSSLDNGALIS--ACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQL 162 (1358)
Q Consensus 85 ~~~~~~~~~~~~~~s~d~~~L~S--~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~ 162 (1358)
..|.+|.. -+.+-.|.|||++.++-....+.. ........+.+......+.|
T Consensus 166 ---------------~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s---ne~v~~a~FHPtd~nliit~-------- 219 (626)
T KOG2106|consen 166 ---------------NGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS---NEVVFLATFHPTDPNLIITC-------- 219 (626)
T ss_pred ---------------CCCceEEEecCCCccccchhhchhhhccCcceec---cceEEEEEeccCCCcEEEEe--------
Confidence 23333433 345778999999977643332222 12222333333322232222
Q ss_pred cccccccccccccccccccCCCCCCCCceEEEEeCCCceEEEE--EEecccccCCcceEEEeecCCCCCcceEEEEecCC
Q 000673 163 SDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQT--VFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVG 240 (1358)
Q Consensus 163 ~~~~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~--l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~d 240 (1358)
.++++..|++.++.++.+ +|.+... ..|.+++|.. +.-++++..+
T Consensus 220 -------------------------Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~e-------ngdviTgDS~ 266 (626)
T KOG2106|consen 220 -------------------------GKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLE-------NGDVITGDSG 266 (626)
T ss_pred -------------------------CCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcC-------CCCEEeecCC
Confidence 368999999988877654 4553333 4488999874 3357888899
Q ss_pred cEEEEecccCcccccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce--EEeecCCCcccceeeee
Q 000673 241 RLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFV 318 (1358)
Q Consensus 241 g~vkvW~l~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~~~~~~~ 318 (1358)
|.+.||+.... . -.+++ . .|+++|.++....+|..+- ..+|+- .||- .-..+.+..
T Consensus 267 G~i~Iw~~~~~--------~------~~k~~--~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~--~y~k~r~~e-- 324 (626)
T KOG2106|consen 267 GNILIWSKGTN--------R------ISKQV--H-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDD--NYRKLRETE-- 324 (626)
T ss_pred ceEEEEeCCCc--------e------EEeEe--e-ecCCceEEEEEecCccEee-cCccceEEeccc--ccccccccc--
Confidence 99999998553 1 11122 2 8999999999999996654 777776 4542 111111110
Q ss_pred ecceeeecCCCCCceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCC
Q 000673 319 DNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSG 398 (1358)
Q Consensus 319 ~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~ 398 (1358)
-+.....+-...- +. ..+.|++....+.-=.++.+ ..+..+ .+.+
T Consensus 325 --------lPe~~G~iRtv~e--~~---------------~di~vGTtrN~iL~Gt~~~~---------f~~~v~-gh~d 369 (626)
T KOG2106|consen 325 --------LPEQFGPIRTVAE--GK---------------GDILVGTTRNFILQGTLENG---------FTLTVQ-GHGD 369 (626)
T ss_pred --------CchhcCCeeEEec--CC---------------CcEEEeeccceEEEeeecCC---------ceEEEE-eccc
Confidence 0111100111000 00 02444444333222122110 000000 0001
Q ss_pred CceeEeEeeccceEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeeccccccCCCCcccccc
Q 000673 399 VKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKS 478 (1358)
Q Consensus 399 ~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l 478 (1358)
....+...++.++ +
T Consensus 370 elwgla~hps~~q------------------------------------------------------------------~ 383 (626)
T KOG2106|consen 370 ELWGLATHPSKNQ------------------------------------------------------------------L 383 (626)
T ss_pred ceeeEEcCCChhh------------------------------------------------------------------e
Confidence 1111111222222 2
Q ss_pred cccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCE-EEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYA-IVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 479 ~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~-lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
.+...+..+++|+ +.++ ..... -..++-|+. |+|.+ ++.|+..|.-.+.+ .
T Consensus 384 ~T~gqdk~v~lW~--~~k~--~wt~~---~~d~~~~~~------fhpsg~va~Gt~~G~w~V~d---------------~ 435 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHKL--EWTKI---IEDPAECAD------FHPSGVVAVGTATGRWFVLD---------------T 435 (626)
T ss_pred eeccCcceEEEcc--CCce--eEEEE---ecCceeEee------ccCcceEEEeeccceEEEEe---------------c
Confidence 2333444555555 1111 01000 112344444 66654 88999999887732 4
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcE-EEE-EecCCCcEEEEEeCCCCCC
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL-ITV-MHHHVAPVRQIILSPPQTE 635 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~-l~~-~~~H~~~V~~l~~spd~~~ 635 (1358)
++...+..-.. ..++++++|+ ||| .+|+.||.|+.|.+|.+..... ..+ =+.|..+|+.+.|++|
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ys-----p~G----~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D--- 502 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYS-----PDG----AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD--- 502 (626)
T ss_pred ccceeEEEEec-CCceEEEEEc-----CCC----CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC---
Confidence 44333333333 7899999998 899 9999999999999999875443 222 2335589999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEECCCCc--------------EEEEe----cCCCCCcEEEEEcCCCCEEEEEecCCccccCC
Q 000673 636 HPWSDCFLSVGEDFSVALASLETLR--------------VERMF----PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1358)
Q Consensus 636 ~~~g~~l~S~s~D~tV~lwdl~~~~--------------~~~~l----~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~ 697 (1358)
++++.+.+.|-.|..|.....+ |..-| ..|...+..++-+.+++.++ ++|.
T Consensus 503 ---s~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA--------~gdd 571 (626)
T KOG2106|consen 503 ---SQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLA--------SGDD 571 (626)
T ss_pred ---CceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhh--------cccc
Confidence 8999999999999999543222 21111 12333455555566666665 5666
Q ss_pred CCeEEEEECCC---CeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeC
Q 000673 698 VDVLFIWDVKT---GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 698 DgtV~vWd~~t---g~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~ 765 (1358)
.|.|+++...- ...-..+.||++.+..+.|....+..+.+| .|.++-+|++
T Consensus 572 ~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg-----------------~D~Si~qW~l 625 (626)
T KOG2106|consen 572 FGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG-----------------KDTSIMQWRL 625 (626)
T ss_pred CceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC-----------------CCceEEEEEe
Confidence 79999998753 344567889999999998876555444444 4999999964
No 52
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=2.6e-19 Score=219.31 Aligned_cols=220 Identities=15% Similarity=0.190 Sum_probs=164.3
Q ss_pred ecccCCCcEEEEEeec-cCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 504 DFVHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~-~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
.+.+|.+.|+++.+.+ +.. .|++|+.||+|++|+...... .....+++..|.||...|.+++|+|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~----~LaSgS~DgtIkIWdi~~~~~--------~~~~~~~l~~L~gH~~~V~~l~f~P-- 135 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQ----KLFTASEDGTIMGWGIPEEGL--------TQNISDPIVHLQGHTKKVGIVSFHP-- 135 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCC----EEEEEeCCCEEEEEecCCCcc--------ccccCcceEEecCCCCcEEEEEeCc--
Confidence 3578999999988555 333 399999999999976542110 0011246778999999999999994
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEE
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~ 662 (1358)
++ .++|+||+.|++|++||+.+++.+..+.+|.+.|.+++|+|+ |.+|++++.|++|++||+++++.+
T Consensus 136 ---~~---~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd------G~lLatgs~Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 136 ---SA---MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD------GSLLCTTSKDKKLNIIDPRDGTIV 203 (493)
T ss_pred ---CC---CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC------CCEEEEecCCCEEEEEECCCCcEE
Confidence 32 269999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred EEecCCCCCc-EEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe-EEEEEeCCCCceEEEeeecccccceeecce
Q 000673 663 RMFPGHPNYP-AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1358)
Q Consensus 663 ~~l~gH~~~V-~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~-~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~ 740 (1358)
..+.+|.+.. ..+.|.|++..+++++.+ ...|+.|++||+++.. .+.....|....+...+........+.|
T Consensus 204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s----~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lg-- 277 (493)
T PTZ00421 204 SSVEAHASAKSQRCLWAKRKDLIITLGCS----KSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIG-- 277 (493)
T ss_pred EEEecCCCCcceEEEEcCCCCeEEEEecC----CCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEE--
Confidence 9999997654 578999998888866542 2235999999998754 4444444443333332322111111111
Q ss_pred ecCcccccCCccccccCCcEEEEeCCCc
Q 000673 741 LNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1358)
Q Consensus 741 l~g~~~~s~~l~~~~~D~tvr~W~~~~~ 768 (1358)
...|++||+|++.+.
T Consensus 278 -------------gkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 278 -------------SKGEGNIRCFELMNE 292 (493)
T ss_pred -------------EeCCCeEEEEEeeCC
Confidence 123999999998643
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.4e-20 Score=191.93 Aligned_cols=221 Identities=19% Similarity=0.180 Sum_probs=188.6
Q ss_pred cccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCc
Q 000673 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1358)
Q Consensus 481 t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~ 560 (1358)
...+.++++|+.... .+..++.+|+..|.......++.. +++|+.|..+.+ ||+.+|
T Consensus 35 cGsdrtvrLWNp~rg----~liktYsghG~EVlD~~~s~Dnsk----f~s~GgDk~v~v---------------wDV~TG 91 (307)
T KOG0316|consen 35 CGSDRTVRLWNPLRG----ALIKTYSGHGHEVLDAALSSDNSK----FASCGGDKAVQV---------------WDVNTG 91 (307)
T ss_pred cCCCceEEeeccccc----ceeeeecCCCceeeeccccccccc----cccCCCCceEEE---------------EEcccC
Confidence 345678999987543 788999999999998877777765 899999999999 568899
Q ss_pred eEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCC--CcEEEEEecCCCcEEEEEeCCCCCCCCC
Q 000673 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1358)
Q Consensus 561 ~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~s--g~~l~~~~~H~~~V~~l~~spd~~~~~~ 638 (1358)
+..+.|+||.+.|+.+.|+ -+. ..++|||.|.++++||.++ .++++.+....+.|.++.++
T Consensus 92 kv~Rr~rgH~aqVNtV~fN-----ees----SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-------- 154 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFN-----EES----SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-------- 154 (307)
T ss_pred eeeeecccccceeeEEEec-----Ccc----eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--------
Confidence 9999999999999999997 344 8999999999999999875 57889999999999999986
Q ss_pred CCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCC
Q 000673 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1358)
Q Consensus 639 g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH 718 (1358)
+.-|++|+.||+++.||++.|+....+.|| +|+++.|+++++..+.++.| +++|+-|-+||++++.++||
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~--------stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLD--------STLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeecc--------ceeeecccchhHHHHHhccc
Confidence 568999999999999999999988888887 79999999999999976654 89999999999999999999
Q ss_pred CCceEEEeeeccccc-ceeecceecCcccccCCccccccCCcEEEEeCCC
Q 000673 719 ASHSMFDHFCKGISM-NSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1358)
Q Consensus 719 ~~~v~~~~~~~~~~~-~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~ 767 (1358)
.....-+..|...+. .+++|+ +||.+-.|++-+
T Consensus 225 kn~eykldc~l~qsdthV~sgS----------------EDG~Vy~wdLvd 258 (307)
T KOG0316|consen 225 KNMEYKLDCCLNQSDTHVFSGS----------------EDGKVYFWDLVD 258 (307)
T ss_pred ccceeeeeeeecccceeEEecc----------------CCceEEEEEecc
Confidence 998887766643322 244444 699999999753
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.84 E-value=4.3e-18 Score=191.21 Aligned_cols=202 Identities=23% Similarity=0.281 Sum_probs=165.9
Q ss_pred ecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEecccc
Q 000673 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~ 583 (1358)
.+..|...+.++.+.++..+ ++++..+|.|.+|+ ..+++....+.+|.+.|+++.|+
T Consensus 88 ~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~i~~~~---------------~~~~~~~~~~~~~~~~i~~~~~~---- 144 (289)
T cd00200 88 TLTGHTSYVSSVAFSPDGRI----LSSSSRDKTIKVWD---------------VETGKCLTTLRGHTDWVNSVAFS---- 144 (289)
T ss_pred EEeccCCcEEEEEEcCCCCE----EEEecCCCeEEEEE---------------CCCcEEEEEeccCCCcEEEEEEc----
Confidence 34566677888776555443 66666699999944 44566788888999999999998
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEE
Q 000673 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1358)
Q Consensus 584 ~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~ 663 (1358)
|++ .++++++.|+.|++||+.+++.+..+..|.+.|.++.|+|+ ++.+++++.|+.|++||+++++.+.
T Consensus 145 -~~~----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 145 -PDG----TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD------GEKLLSSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred -CcC----CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCC------cCEEEEecCCCcEEEEECCCCceec
Confidence 555 88999988999999999999999999999999999999999 7889999999999999999999999
Q ss_pred EecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecceecC
Q 000673 664 MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNG 743 (1358)
Q Consensus 664 ~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g 743 (1358)
.+..|...+.++.|+|++.++++++ .|+.|++||+++++....+.+|...+....+++..
T Consensus 214 ~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------ 273 (289)
T cd00200 214 TLRGHENGVNSVAFSPDGYLLASGS--------EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG------------ 273 (289)
T ss_pred chhhcCCceEEEEEcCCCcEEEEEc--------CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCC------------
Confidence 9988998999999999988887432 24899999999999999999999888777665421
Q ss_pred cccccCCccccccCCcEEEEe
Q 000673 744 NTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 744 ~~~~s~~l~~~~~D~tvr~W~ 764 (1358)
. .++....|+++++|+
T Consensus 274 ~-----~l~~~~~d~~i~iw~ 289 (289)
T cd00200 274 K-----RLASGSADGTIRIWD 289 (289)
T ss_pred C-----EEEEecCCCeEEecC
Confidence 1 223334599999994
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.83 E-value=2.7e-20 Score=211.49 Aligned_cols=167 Identities=19% Similarity=0.216 Sum_probs=140.5
Q ss_pred EEEeCCCCCCceeEEEEEec-CCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCccccc
Q 000673 7 ACIWSGTPPSHRVTATSALT-QPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEH 85 (1358)
Q Consensus 7 ~~lw~~~~p~h~Vtava~Sp-dg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~ 85 (1358)
...|. .|+.-|+++.|.| .+.+|.+|+.||.|+||++.. ..+.++++.||..+|.+++|
T Consensus 207 ~~~~~--gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~----~~~~lrtf~gH~k~Vrd~~~-------------- 266 (503)
T KOG0282|consen 207 SHNLS--GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD----DRRCLRTFKGHRKPVRDASF-------------- 266 (503)
T ss_pred eeecc--CCccccchhhhccceeeEEEecCCCceEEEEEEec----Ccceehhhhcchhhhhhhhc--------------
Confidence 34453 5667899999999 899999999999999999985 36788999999999999965
Q ss_pred ccccccCcccccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCccccc
Q 000673 86 WKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDH 165 (1358)
Q Consensus 86 ~~~~~~~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~ 165 (1358)
+.+|..++|+|.|+.|++||.++|+|+.+..+- ..+..+.+.|.++. .+.+.+
T Consensus 267 -------------s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~---~~~~cvkf~pd~~n--~fl~G~--------- 319 (503)
T KOG0282|consen 267 -------------NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD---KVPTCVKFHPDNQN--IFLVGG--------- 319 (503)
T ss_pred -------------cccCCeeeeeecceeeeeeccccceEEEEEecC---CCceeeecCCCCCc--EEEEec---------
Confidence 678999999999999999999999999988775 45666666655532 233444
Q ss_pred ccccccccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEE
Q 000673 166 HSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLV 245 (1358)
Q Consensus 166 ~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkv 245 (1358)
.++.|+-||..++++++..-. +.++|..+.|+.. +..+++.+.|+.++|
T Consensus 320 ----------------------sd~ki~~wDiRs~kvvqeYd~---hLg~i~~i~F~~~------g~rFissSDdks~ri 368 (503)
T KOG0282|consen 320 ----------------------SDKKIRQWDIRSGKVVQEYDR---HLGAILDITFVDE------GRRFISSSDDKSVRI 368 (503)
T ss_pred ----------------------CCCcEEEEeccchHHHHHHHh---hhhheeeeEEccC------CceEeeeccCccEEE
Confidence 578999999999999999988 8899999999843 558999999999999
Q ss_pred ecccCc
Q 000673 246 PISKES 251 (1358)
Q Consensus 246 W~l~~~ 251 (1358)
|+...+
T Consensus 369 We~~~~ 374 (503)
T KOG0282|consen 369 WENRIP 374 (503)
T ss_pred EEcCCC
Confidence 998764
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=5.7e-20 Score=219.31 Aligned_cols=220 Identities=20% Similarity=0.184 Sum_probs=181.8
Q ss_pred CCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEE
Q 000673 484 QDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR 563 (1358)
Q Consensus 484 ~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~ 563 (1358)
.+.|++||-.- +.+...|.+|.++|..+.|=+.+.+ +++|+.|-.|++|+ .++.+|+
T Consensus 30 sG~IQlWDYRM----~tli~rFdeHdGpVRgv~FH~~qpl----FVSGGDDykIkVWn---------------Yk~rrcl 86 (1202)
T KOG0292|consen 30 SGVIQLWDYRM----GTLIDRFDEHDGPVRGVDFHPTQPL----FVSGGDDYKIKVWN---------------YKTRRCL 86 (1202)
T ss_pred Cceeeeehhhh----hhHHhhhhccCCccceeeecCCCCe----EEecCCccEEEEEe---------------cccceeh
Confidence 45688998643 3677889999999999885555554 99999999999954 5577899
Q ss_pred EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEE
Q 000673 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1358)
Q Consensus 564 ~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~ 643 (1358)
.+|.||-+.|..+.||+ .- .+++|+|.|.|||||+..+++|+..++||...|.|..|+|. .+.++
T Consensus 87 ftL~GHlDYVRt~~FHh-----ey----PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt------EDlIV 151 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHH-----EY----PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT------EDLIV 151 (1202)
T ss_pred hhhccccceeEEeeccC-----CC----ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc------cceEE
Confidence 99999999999999994 22 79999999999999999999999999999999999999997 68999
Q ss_pred EEeCCCcEEEEECCCC---------------------------cE--EEEecCCCCCcEEEEEcCCCCEEEEEecCCccc
Q 000673 644 SVGEDFSVALASLETL---------------------------RV--ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRT 694 (1358)
Q Consensus 644 S~s~D~tV~lwdl~~~---------------------------~~--~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgs 694 (1358)
|+|-|.+||+||+..- .+ -+.+.||...|+.++|+|+-..+++|
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG------- 224 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG------- 224 (1202)
T ss_pred EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec-------
Confidence 9999999999997521 11 24567999999999999999999843
Q ss_pred cCCCCeEEEEECCCCe--EEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 695 SDAVDVLFIWDVKTGA--RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 695 sD~DgtV~vWd~~tg~--~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
+| |+.|++|.+..-+ .+.+++||...|.++.|.+.. +++++.++|+++|+||..
T Consensus 225 ~D-DRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-----------------~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 225 AD-DRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-----------------DLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred CC-cceeeEEEeccccceeehhhhcccCCcceEEecCcc-----------------ceeEecCCCccEEEEecc
Confidence 23 6999999996543 356789999999988776522 233455569999999974
No 57
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.83 E-value=2.8e-18 Score=189.38 Aligned_cols=330 Identities=16% Similarity=0.206 Sum_probs=240.0
Q ss_pred ccceEeccCcccCceEEEEecCCcEEEEEecCce--EEeecCCCcccceeeeeecceeeecCCCCCceEEEEeecccchh
Q 000673 268 LDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAE 345 (1358)
Q Consensus 268 ~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~ 345 (1358)
...+.....|...+.++++.|+.+++++.+.|.. +|+. .++..+.++ . .....++...|..++.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~-~~ge~~~el----------t-gHKDSVt~~~Fshdgt-- 119 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDI-STGEFAGEL----------T-GHKDSVTCCSFSHDGT-- 119 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEc-cCCcceeEe----------c-CCCCceEEEEEccCce--
Confidence 3456678889999999999999999999999877 7877 444444443 2 2235666677773444
Q ss_pred ccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeEeeccceEEEeeeeccccccc
Q 000673 346 KIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEET 425 (1358)
Q Consensus 346 ~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~ 425 (1358)
.++.++.+|.+.+|+........+ +. +.. +.
T Consensus 120 --------------lLATGdmsG~v~v~~~stg~~~~~-------------------------------~~---~e~-~d 150 (399)
T KOG0296|consen 120 --------------LLATGDMSGKVLVFKVSTGGEQWK-------------------------------LD---QEV-ED 150 (399)
T ss_pred --------------EEEecCCCccEEEEEcccCceEEE-------------------------------ee---ccc-Cc
Confidence 788899999999999886311100 00 000 11
Q ss_pred ccccCeEEEEecCCCCCCCCcceeEEeecCccce---eeeccccccCCCCcccccccccccCCccccccccCCCCCCCce
Q 000673 426 SQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVD---WVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGR 502 (1358)
Q Consensus 426 ~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~---w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~ 502 (1358)
+. ...| +. ...++..|..+|. |.++ +. ...
T Consensus 151 ie----Wl~W--Hp-------~a~illAG~~DGsvWmw~ip------------------------------~~----~~~ 183 (399)
T KOG0296|consen 151 IE----WLKW--HP-------RAHILLAGSTDGSVWMWQIP------------------------------SQ----ALC 183 (399)
T ss_pred eE----EEEe--cc-------cccEEEeecCCCcEEEEECC------------------------------Cc----cee
Confidence 11 1234 11 3357777776666 3433 11 244
Q ss_pred eecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCC-CCEEEEEEecc
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT-GAVLCLAAHRM 581 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~-~~V~~l~~sp~ 581 (1358)
+.+.||+.++++-.++++++. +++|+.||+|++ |+.+++++++.+.+-. ..-+|+.++
T Consensus 184 kv~~Gh~~~ct~G~f~pdGKr----~~tgy~dgti~~---------------Wn~ktg~p~~~~~~~e~~~~~~~~~~-- 242 (399)
T KOG0296|consen 184 KVMSGHNSPCTCGEFIPDGKR----ILTGYDDGTIIV---------------WNPKTGQPLHKITQAEGLELPCISLN-- 242 (399)
T ss_pred eEecCCCCCcccccccCCCce----EEEEecCceEEE---------------EecCCCceeEEecccccCcCCccccc--
Confidence 667899999999877777665 999999999999 5677888988886433 456777775
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEE
Q 000673 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--------HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1358)
Q Consensus 582 ~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~--------~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~l 653 (1358)
.++ ..+++|+.|+.+++-+..+|+.+..+. .|...+.|+.+.|-... -.+.|+|+.||+|.|
T Consensus 243 ---~~~----~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~---lpL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 243 ---LAG----STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK---LPLAACGSVDGTIAI 312 (399)
T ss_pred ---ccc----ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc---cchhhcccccceEEE
Confidence 555 899999999999999999999988887 46666777777765321 357899999999999
Q ss_pred EECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeeccccc
Q 000673 654 ASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISM 733 (1358)
Q Consensus 654 wdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~ 733 (1358)
||+...+..+.++ |...|..+.|-+ ..+|+++|.+ |.||.||.|+|+++.+++||...|......+.
T Consensus 313 yD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~--------g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~--- 379 (399)
T KOG0296|consen 313 YDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACAN--------GKVRQWDARTGQLKFTYTGHQMGILDFALSPQ--- 379 (399)
T ss_pred Eecccchhheecc-CCCceEEEEEcC-cchheeeccC--------ceEEeeeccccceEEEEecCchheeEEEEcCC---
Confidence 9999887766665 888899999998 7888865543 99999999999999999999999976544431
Q ss_pred ceeecceecCcccccCCccccccCCcEEEEeC
Q 000673 734 NSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 734 ~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~ 765 (1358)
...+++++.|++.|+...
T Consensus 380 --------------~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 380 --------------KRLVVTVSDDNTALVFEV 397 (399)
T ss_pred --------------CcEEEEecCCCeEEEEec
Confidence 123344556999998853
No 58
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.83 E-value=5e-19 Score=217.11 Aligned_cols=217 Identities=19% Similarity=0.330 Sum_probs=173.7
Q ss_pred ccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCC
Q 000673 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1358)
Q Consensus 480 ~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t 559 (1358)
+.+.+.++++|+... +++...+.+|...|.++. ..+..++.|+.|.+|++ |++++
T Consensus 266 sgS~D~t~rvWd~~s----g~C~~~l~gh~stv~~~~------~~~~~~~sgs~D~tVkV---------------W~v~n 320 (537)
T KOG0274|consen 266 SGSTDKTERVWDCST----GECTHSLQGHTSSVRCLT------IDPFLLVSGSRDNTVKV---------------WDVTN 320 (537)
T ss_pred EEecCCcEEeEecCC----CcEEEEecCCCceEEEEE------ccCceEeeccCCceEEE---------------EeccC
Confidence 334455566666433 366777889999998854 33444788899999999 44668
Q ss_pred ceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCC
Q 000673 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1358)
Q Consensus 560 ~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g 639 (1358)
+.+++.+.||.+.|+|+..+ + .++++|+.|++|++||+.++++++++.+|.+.|.++.+.+.
T Consensus 321 ~~~l~l~~~h~~~V~~v~~~-------~----~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~------- 382 (537)
T KOG0274|consen 321 GACLNLLRGHTGPVNCVQLD-------E----PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE------- 382 (537)
T ss_pred cceEEEeccccccEEEEEec-------C----CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-------
Confidence 88999999999999999975 3 89999999999999999999999999999999999988652
Q ss_pred CeEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeC-
Q 000673 640 DCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG- 717 (1358)
Q Consensus 640 ~~l~S~s~D~tV~lwdl~~~-~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~G- 717 (1358)
..+++|+.|++|++||++++ +|+..+.+|...+..+.+ .+++|+++ ++ |++|++||.+++++++++.+
T Consensus 383 ~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~------~a--D~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 383 NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSS------SA--DGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEec------cc--cccEEEeecccCceeeeeccC
Confidence 68999999999999999999 999999999988866665 46788843 33 48999999999999999999
Q ss_pred CCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCc
Q 000673 718 TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1358)
Q Consensus 718 H~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~ 768 (1358)
|...+.++.+- ...++....|+++++|+++..
T Consensus 453 ~~~~v~~l~~~-------------------~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 453 HVGGVSALALG-------------------KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred CcccEEEeecC-------------------cceEEEEecCCeeEEEecccC
Confidence 66777654321 112233345999999998644
No 59
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=2.9e-18 Score=200.44 Aligned_cols=190 Identities=12% Similarity=0.140 Sum_probs=142.2
Q ss_pred cccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCc
Q 000673 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1358)
Q Consensus 481 t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~ 560 (1358)
.+-+.+|+++|...+. .+.+++.+|...||++.|...+.. .++++.+.|..|....+...... ... ..
T Consensus 522 asrdRlIHV~Dv~rny---~l~qtld~HSssITsvKFa~~gln--~~MiscGADksimFr~~qk~~~g----~~f-~r-- 589 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNY---DLVQTLDGHSSSITSVKFACNGLN--RKMISCGADKSIMFRVNQKASSG----RLF-PR-- 589 (1080)
T ss_pred ccCCceEEEEeccccc---chhhhhcccccceeEEEEeecCCc--eEEEeccCchhhheehhccccCc----eec-cc--
Confidence 3345567777765443 356777899999999987766521 12666668888876443321110 000 00
Q ss_pred eEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEec---CCCcEEEEEeCCCCCCCC
Q 000673 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---HVAPVRQIILSPPQTEHP 637 (1358)
Q Consensus 561 ~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~---H~~~V~~l~~spd~~~~~ 637 (1358)
-.+++ -+..+..+++. |.. ++++++++|+.|+|+|+.+|+..+.|++ |.+....+...|.
T Consensus 590 -~t~t~--~ktTlYDm~Vd-----p~~----k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS----- 652 (1080)
T KOG1408|consen 590 -HTQTL--SKTTLYDMAVD-----PTS----KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS----- 652 (1080)
T ss_pred -ccccc--ccceEEEeeeC-----CCc----ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC-----
Confidence 00111 13467778876 555 8999999999999999999999999986 6677778888888
Q ss_pred CCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 638 ~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
|.++++.+.|+++.++|.-+|+|+..+.||...|+.+.|.+|-+.|++. ++ ||.|.||.+..
T Consensus 653 -giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv------sg--DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 653 -GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV------SG--DGCIFVWKLPL 714 (1080)
T ss_pred -ccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheee------cC--CceEEEEECch
Confidence 8999999999999999999999999999999999999999999999943 33 59999999864
No 60
>PTZ00420 coronin; Provisional
Probab=99.82 E-value=3e-18 Score=210.89 Aligned_cols=205 Identities=8% Similarity=0.048 Sum_probs=154.5
Q ss_pred ccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCce
Q 000673 482 FCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHV 561 (1358)
Q Consensus 482 ~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~ 561 (1358)
.....+++|+.... .....+.+|...|.++.+.+.. +..|++|+.||.|++|+....... . .....
T Consensus 51 G~~gvI~L~~~~r~----~~v~~L~gH~~~V~~lafsP~~---~~lLASgS~DgtIrIWDi~t~~~~------~-~~i~~ 116 (568)
T PTZ00420 51 GLIGAIRLENQMRK----PPVIKLKGHTSSILDLQFNPCF---SEILASGSEDLTIRVWEIPHNDES------V-KEIKD 116 (568)
T ss_pred CceeEEEeeecCCC----ceEEEEcCCCCCEEEEEEcCCC---CCEEEEEeCCCeEEEEECCCCCcc------c-ccccc
Confidence 34566788876543 3456678999999998854431 124999999999999765421100 0 00113
Q ss_pred EEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCe
Q 000673 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1358)
Q Consensus 562 ~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~ 641 (1358)
+...+.+|.+.|++++|+ |++ ..+|+||+.|++|++||+.+++.+..+. |...|.+++|+|+ |.+
T Consensus 117 p~~~L~gH~~~V~sVaf~-----P~g---~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd------G~l 181 (568)
T PTZ00420 117 PQCILKGHKKKISIIDWN-----PMN---YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK------GNL 181 (568)
T ss_pred ceEEeecCCCcEEEEEEC-----CCC---CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC------CCE
Confidence 556789999999999999 555 2467899999999999999999887775 6688999999999 899
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCCCCCcEE-----EEEcCCCCEEEEEecCCccccCCCCeEEEEECCC-CeEEEEE
Q 000673 642 FLSVGEDFSVALASLETLRVERMFPGHPNYPAK-----VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVL 715 (1358)
Q Consensus 642 l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~-----v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t-g~~~~~l 715 (1358)
|++++.|++|++||+++++.+..+.+|.+.+.. ..|++++.+|++++.| ... +++|+|||+++ ++.+..+
T Consensus 182 Lat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d--~~~--~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 182 LSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFS--KNN--MREMKLWDLKNTTSALVTM 257 (568)
T ss_pred EEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcC--CCC--ccEEEEEECCCCCCceEEE
Confidence 999999999999999999999999999876532 2356899999987654 112 36899999995 6666665
Q ss_pred eCCC
Q 000673 716 RGTA 719 (1358)
Q Consensus 716 ~GH~ 719 (1358)
..+.
T Consensus 258 ~ld~ 261 (568)
T PTZ00420 258 SIDN 261 (568)
T ss_pred EecC
Confidence 4443
No 61
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=3.6e-17 Score=192.61 Aligned_cols=518 Identities=14% Similarity=0.106 Sum_probs=304.5
Q ss_pred EeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCcccccccCCCCeEEEeeCCCe
Q 000673 34 GGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTDGV 113 (1358)
Q Consensus 34 Gs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~L~S~s~Dg~ 113 (1358)
-|....|.+||-.. ..-...+.||.++|+|+.+-+. +.--.+++||+.||+
T Consensus 30 fGa~~~Iav~dp~k-----~~i~t~l~GH~a~VnC~~~l~~------------------------s~~~a~~vsG~sD~~ 80 (764)
T KOG1063|consen 30 FGAGPAIAVADPEK-----ILIVTTLDGHVARVNCVHWLPT------------------------SEIVAEMVSGDSDGR 80 (764)
T ss_pred ecCCceEEEeCccc-----ceeEEeccCCccceEEEEEccc------------------------ccccceEEEccCCCc
Confidence 34667899999985 3456678899999999977544 222338999999999
Q ss_pred EEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcccccccccccccccccccccCCCCCCCCceEE
Q 000673 114 LCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNPPKCTLV 193 (1358)
Q Consensus 114 l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~~~s~d~~~~~~~~~~~~I~ 193 (1358)
|++|-+.+-..+....+. +....+..+. .....++|. ..++.+.
T Consensus 81 v~lW~l~~~~~~~i~~~~---g~~~~~~cv~--a~~~~~~~~-------------------------------~ad~~v~ 124 (764)
T KOG1063|consen 81 VILWKLRDEYLIKIYTIQ---GHCKECVCVV--ARSSVMTCK-------------------------------AADGTVS 124 (764)
T ss_pred EEEEEEeehheEEEEeec---CcceeEEEEE--eeeeEEEee-------------------------------ccCceEE
Confidence 999999866544444443 2111111111 112223332 2568899
Q ss_pred EEeCCCceEEEEEEecccccCCc--ceEEEeecCCCCCcceEEEEecCCcEEEEecccCcccccccCCcceecCCcccce
Q 000673 194 IVDTYGLTIVQTVFHGNLSIGPW--KFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMA 271 (1358)
Q Consensus 194 i~D~~tl~v~~~l~s~~~~~~pi--~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~~~~~~~~l~e~~~~~~~~ 271 (1358)
+||...-++...-.. +...+.+ -++++... .+ --+++-++.+..+.+..-.. ++...+
T Consensus 125 vw~~~~~e~~~~~~~-rf~~k~~ipLcL~~~~~--~~--~~lla~Ggs~~~v~~~s~~~---------------d~f~~v 184 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVL-RFEIKEAIPLCLAALKN--NK--TFLLACGGSKFVVDLYSSSA---------------DSFARV 184 (764)
T ss_pred EeecCCCceeeehhe-ehhhhhHhhHHHhhhcc--CC--cEEEEecCcceEEEEeccCC---------------cceeEE
Confidence 999854442221111 1122232 33344421 21 22444556677776644331 144567
Q ss_pred EeccCcccCceEEEEecCCc---EEEEEecCce--EEeecCCCcccceeeeeecceeeecCCCCCceEEEEeecccchhc
Q 000673 272 ILQNGVVEGGHLVSVATCGN---IIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEK 346 (1358)
Q Consensus 272 ~~~~~~~~~v~~vs~s~dg~---~~~~~~~~~~--i~d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~ 346 (1358)
..+.+|.-.|+.++|...+. .+++.++|.+ ||.+...+. .++. ..+... .... ..
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~-~~~~-------~~e~~~-------t~~~--~~--- 244 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDD-EDSN-------EREDSL-------TTLS--NL--- 244 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCC-cccc-------cccccc-------cccc--CC---
Confidence 78899999999999987776 5666777777 777621110 0000 000000 0000 00
Q ss_pred cccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeEeeccceEEEeeeecccccccc
Q 000673 347 IENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETS 426 (1358)
Q Consensus 347 ~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~ 426 (1358)
-.+. ..+.+. |++.. ..+ .-++.+=+.++.+.+.+..|++.+ .|.+
T Consensus 245 ------------~~f~---~l~~i~-~~is~----------eal--l~GHeDWV~sv~W~p~~~~LLSAS-----aDks- 290 (764)
T KOG1063|consen 245 ------------PVFM---ILEEIQ-YRISF----------EAL--LMGHEDWVYSVWWHPEGLDLLSAS-----ADKS- 290 (764)
T ss_pred ------------ceee---eeeeEE-EEEeh----------hhh--hcCcccceEEEEEccchhhheecc-----cCcc-
Confidence 0111 111111 33321 000 013334445667777776666654 3444
Q ss_pred cccCeEEEEecCCCCCCCCc---ceeEE--e--ecCc-cceeeeccccccCCCCcccccccccccCCccccccccCCCCC
Q 000673 427 QWRPYISVWSLSQKHSGPGK---QCRMV--G--EGFS-FVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQA 498 (1358)
Q Consensus 427 ~~~p~v~vws~~~~~~~~~~---~~~~l--~--~g~~-~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~~~ 498 (1358)
+.+|.+... .|. ..++= + .|+. .+.|..+... +......+-.++|...++...
T Consensus 291 -----miiW~pd~~---tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~-----------ii~~g~~Gg~hlWkt~d~~~w 351 (764)
T KOG1063|consen 291 -----MIIWKPDEN---TGIWVDVVRLGEVGGSAGGFWGGLWSPNSNV-----------IIAHGRTGGFHLWKTKDKTFW 351 (764)
T ss_pred -----eEEEecCCc---cceEEEEEEeecccccccceeeEEEcCCCCE-----------EEEecccCcEEEEeccCccce
Confidence 566643111 111 11111 1 1111 1225544311 222334556778884443332
Q ss_pred CCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEE
Q 000673 499 GDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 578 (1358)
Q Consensus 499 ~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~ 578 (1358)
.....++||.+.|+.+..-+.+.| +++.+.|-+-++ |...++. .+...+..-+-|....+|++|
T Consensus 352 -~~~~~iSGH~~~V~dv~W~psGef----lLsvs~DQTTRl--Fa~wg~q---------~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 352 -TQEPVISGHVDGVKDVDWDPSGEF----LLSVSLDQTTRL--FARWGRQ---------QEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred -eeccccccccccceeeeecCCCCE----EEEeccccceee--ecccccc---------cceeeecccccccccceeeeh
Confidence 223446899999999987777777 999999999888 4432110 111112222347889999998
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEeCCC----------C---------------------------------c---
Q 000673 579 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS----------G---------------------------------N--- 612 (1358)
Q Consensus 579 sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~s----------g---------------------------------~--- 612 (1358)
-+ . +..++||.+.+.+|+++... + .
T Consensus 416 vn-----~----~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~ 486 (764)
T KOG1063|consen 416 VN-----E----DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA 486 (764)
T ss_pred cc-----C----CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence 52 1 36899999999999997641 1 0
Q ss_pred ------------------------------EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCC-----CcEEEEECC
Q 000673 613 ------------------------------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED-----FSVALASLE 657 (1358)
Q Consensus 613 ------------------------------~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D-----~tV~lwdl~ 657 (1358)
.++++.||.-.|.+++.+|+ |+.+||++.. ..|+||+..
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~------gnliASaCKS~~~ehAvI~lw~t~ 560 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT------GNLIASACKSSLKEHAVIRLWNTA 560 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC------CCEEeehhhhCCccceEEEEEecc
Confidence 02355689999999999999 8999999865 358999999
Q ss_pred CCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeE----EEEEeCCCCceEEEeeeccccc
Q 000673 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR----ERVLRGTASHSMFDHFCKGISM 733 (1358)
Q Consensus 658 ~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~----~~~l~GH~~~v~~~~~~~~~~~ 733 (1358)
+...++.+.+|+-.|+.++|+|||+||++.|. |+++.+|....+.. ...++.|+--+....+
T Consensus 561 ~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR--------DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW------ 626 (764)
T KOG1063|consen 561 NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR--------DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSW------ 626 (764)
T ss_pred chhhhheecccceEEEEEEECCCCcEEEEeec--------CceEEeeeeecccchhhhhccccccceEEEEccc------
Confidence 99999999999999999999999999996554 49999998754322 1236678754543322
Q ss_pred ceeecceecCcccccCC-ccccccCCcEEEEeCC
Q 000673 734 NSISGSVLNGNTSVSSL-LLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 734 ~~~sGs~l~g~~~~s~~-l~~~~~D~tvr~W~~~ 766 (1358)
.+.+. +.+.++|.++++|...
T Consensus 627 ------------~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 627 ------------SPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred ------------CcccceeEEecCCceEEEEecc
Confidence 22222 5667789999999654
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.81 E-value=9.7e-18 Score=220.19 Aligned_cols=249 Identities=19% Similarity=0.186 Sum_probs=184.6
Q ss_pred CCCCceeEeEeeccceEEEeeeecccccccccccCeEEEEecCCCCCCCCcc---eeEEeecCcc---ceeeeccccccC
Q 000673 396 PSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQ---CRMVGEGFSF---VDWVNNSTFLDE 469 (1358)
Q Consensus 396 ~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~---~~~l~~g~~~---g~w~~~~~~~~~ 469 (1358)
+...+.++.|.++++++++.. .++. |++|++..... .+.. ......+... -.|...
T Consensus 482 ~~~~V~~i~fs~dg~~latgg-----~D~~------I~iwd~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~------ 543 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAG-----VNKK------IKIFECESIIK-DGRDIHYPVVELASRSKLSGICWNSY------ 543 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEe-----CCCE------EEEEECCcccc-cccccccceEEecccCceeeEEeccC------
Confidence 556778999999999888765 3444 99997532100 0000 0001111110 002211
Q ss_pred CCCcccccccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeec-cCcccCCEEEEEEcCCcEEEEEecCcccC
Q 000673 470 NEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVIS-ESFYAPYAIVYGFFSGEIEVIQFDLFERH 548 (1358)
Q Consensus 470 ~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~-~~~~~p~~lv~G~~dG~I~i~~~~~~~~~ 548 (1358)
.+. .+.++..++.+++|+.... +....+.+|...|+++.+.+ +..+ +++|+.||.|++|+
T Consensus 544 -~~~---~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~----L~Sgs~Dg~v~iWd------- 604 (793)
T PLN00181 544 -IKS---QVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADPTL----LASGSDDGSVKLWS------- 604 (793)
T ss_pred -CCC---EEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCCCE----EEEEcCCCEEEEEE-------
Confidence 111 3667778999999998654 45567789999999988653 3333 89999999999944
Q ss_pred CCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCc-EEEEEecCCCcEEEE
Q 000673 549 NSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQI 627 (1358)
Q Consensus 549 ~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~-~l~~~~~H~~~V~~l 627 (1358)
+.++.+...+..| ..|.++.|++ ++| .+|++|+.|++|++||+..++ .+..+.+|...|.++
T Consensus 605 --------~~~~~~~~~~~~~-~~v~~v~~~~----~~g----~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v 667 (793)
T PLN00181 605 --------INQGVSIGTIKTK-ANICCVQFPS----ESG----RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYV 667 (793)
T ss_pred --------CCCCcEEEEEecC-CCeEEEEEeC----CCC----CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEE
Confidence 5566677777755 6899999974 567 899999999999999998776 577889999999999
Q ss_pred EeCCCCCCCCCCCeEEEEeCCCcEEEEECCC------CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeE
Q 000673 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLET------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVL 701 (1358)
Q Consensus 628 ~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~------~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV 701 (1358)
.|. + +.++++++.|++|++||++. .+++..+.+|...+..+.|+|++++|++|+. |++|
T Consensus 668 ~f~-~------~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~--------D~~v 732 (793)
T PLN00181 668 RFV-D------SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE--------TNEV 732 (793)
T ss_pred EEe-C------CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC--------CCEE
Confidence 997 4 58999999999999999985 3678899999999999999999999996543 3999
Q ss_pred EEEECCCCeEEE
Q 000673 702 FIWDVKTGARER 713 (1358)
Q Consensus 702 ~vWd~~tg~~~~ 713 (1358)
++|+...+..+.
T Consensus 733 ~iw~~~~~~~~~ 744 (793)
T PLN00181 733 FVYHKAFPMPVL 744 (793)
T ss_pred EEEECCCCCceE
Confidence 999987665443
No 63
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.6e-18 Score=182.11 Aligned_cols=207 Identities=16% Similarity=0.210 Sum_probs=169.7
Q ss_pred ceeecccCCCcEEEEEeeccCcccCC---EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEE-ecCCCCEEEE
Q 000673 501 GRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCL 576 (1358)
Q Consensus 501 ~~~~~~~h~~~Vts~~~i~~~~~~p~---~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l-~gH~~~V~~l 576 (1358)
..+.+++|.+++..++ ++|- .|++++.|..|++|.... ..+..+...| .+|+..|..+
T Consensus 6 ~~~~~~gh~~r~W~~a------whp~~g~ilAscg~Dk~vriw~~~~------------~~s~~ck~vld~~hkrsVRsv 67 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVA------WHPGKGVILASCGTDKAVRIWSTSS------------GDSWTCKTVLDDGHKRSVRSV 67 (312)
T ss_pred eEEeecCCCCcEEEEE------eccCCceEEEeecCCceEEEEecCC------------CCcEEEEEeccccchheeeee
Confidence 4456788999999977 6666 389999999999965331 1123455555 5799999999
Q ss_pred EEeccccCCCCCccCcEEEEEeCCCcEEEEeCCC--CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEE
Q 000673 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1358)
Q Consensus 577 ~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~s--g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lw 654 (1358)
+|+ |.| ++|++||-|.|+-||.-.. .+++.++.||...|.|++|+++ |++||++++|++|-+|
T Consensus 68 Aws-----p~g----~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s------G~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 68 AWS-----PHG----RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS------GNYLATCSRDKSVWIW 132 (312)
T ss_pred eec-----CCC----cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC------CCEEEEeeCCCeEEEE
Confidence 998 788 8999999999999998654 3689999999999999999999 9999999999999999
Q ss_pred ECCC---CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC---CCeEEEEEeCCCCceEEEeee
Q 000673 655 SLET---LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK---TGARERVLRGTASHSMFDHFC 728 (1358)
Q Consensus 655 dl~~---~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~---tg~~~~~l~GH~~~v~~~~~~ 728 (1358)
.+.. .+|+..++.|...|..+.|||...+|+++++| ++|++|.-. .-+++.++.||...|....|.
T Consensus 133 e~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYD--------nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~ 204 (312)
T KOG0645|consen 133 EIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYD--------NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD 204 (312)
T ss_pred EecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccC--------CeEEEEeecCCCCeeEEEEecCccceEEEEEec
Confidence 9874 36889999999999999999999999965543 899999876 357999999999988776665
Q ss_pred cccccceeecceecCcccccCCccccccCCcEEEEeC
Q 000673 729 KGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 729 ~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~ 765 (1358)
+. | .-|++...|+|+++|..
T Consensus 205 ~~-------G----------~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 205 NI-------G----------SRLVSCSDDGTVSIWRL 224 (312)
T ss_pred CC-------C----------ceEEEecCCcceEeeee
Confidence 31 1 13455667999999963
No 64
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.80 E-value=5e-20 Score=198.51 Aligned_cols=185 Identities=22% Similarity=0.316 Sum_probs=150.8
Q ss_pred CCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcc-ccCCceEEEEEecCCCCEEEEEEeccccCCCC
Q 000673 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL-KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587 (1358)
Q Consensus 509 ~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~-d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg 587 (1358)
...+-|..|.++..| +++|+-||-|.+|+|-. ++.. |++ -+....|--|.++|.|+.|+ .|.
T Consensus 213 KSh~EcA~FSPDgqy----LvsgSvDGFiEVWny~~-------GKlrKDLk-YQAqd~fMMmd~aVlci~FS-----RDs 275 (508)
T KOG0275|consen 213 KSHVECARFSPDGQY----LVSGSVDGFIEVWNYTT-------GKLRKDLK-YQAQDNFMMMDDAVLCISFS-----RDS 275 (508)
T ss_pred ccchhheeeCCCCce----Eeeccccceeeeehhcc-------chhhhhhh-hhhhcceeecccceEEEeec-----ccH
Confidence 345667777777777 99999999999976541 1100 111 01122345688999999998 566
Q ss_pred CccCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEec
Q 000673 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666 (1358)
Q Consensus 588 ~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~-~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~ 666 (1358)
..|+||+.||.|++|.+.+|.|+++|. .|+..|+|+.|+.| +..++|++.|.++++.-+++|+++..|.
T Consensus 276 ----EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD------~SqiLS~sfD~tvRiHGlKSGK~LKEfr 345 (508)
T KOG0275|consen 276 ----EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD------NSQILSASFDQTVRIHGLKSGKCLKEFR 345 (508)
T ss_pred ----HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC------cchhhcccccceEEEeccccchhHHHhc
Confidence 899999999999999999999999998 89999999999999 7899999999999999999999999999
Q ss_pred CCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeC--CCCceEEEeee
Q 000673 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG--TASHSMFDHFC 728 (1358)
Q Consensus 667 gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~G--H~~~v~~~~~~ 728 (1358)
||+++|+...|.+||.+++++ ++ ||+|+||+.+|++|+.+|+. ....|..+...
T Consensus 346 GHsSyvn~a~ft~dG~~iisa------Ss--DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDGHHIISA------SS--DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL 401 (508)
T ss_pred CccccccceEEcCCCCeEEEe------cC--CccEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence 999999999999999999953 33 49999999999999999873 33444444333
No 65
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.79 E-value=2.8e-19 Score=203.39 Aligned_cols=226 Identities=16% Similarity=0.176 Sum_probs=185.4
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
+.....+..+.+|++.+. +.+..+|.+|..+|.++.+..+... +.+++-|+.|++ ||+
T Consensus 230 lLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~~----fLS~sfD~~lKl---------------wDt 287 (503)
T KOG0282|consen 230 LLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGTS----FLSASFDRFLKL---------------WDT 287 (503)
T ss_pred EEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCCe----eeeeecceeeee---------------ecc
Confidence 334556778999999873 3678999999999999876555554 899999999999 679
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCC
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~ 637 (1358)
++|++...|.- ...++|+.|+ ||+ .+.++.|+.|+.|+.||+++++.++.+..|-+.|..+.|-++
T Consensus 288 ETG~~~~~f~~-~~~~~cvkf~-----pd~---~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~----- 353 (503)
T KOG0282|consen 288 ETGQVLSRFHL-DKVPTCVKFH-----PDN---QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE----- 353 (503)
T ss_pred ccceEEEEEec-CCCceeeecC-----CCC---CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC-----
Confidence 99999888753 3468999999 444 489999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCc--------------------------------EE--------------EEecCCC--
Q 000673 638 WSDCFLSVGEDFSVALASLETLR--------------------------------VE--------------RMFPGHP-- 669 (1358)
Q Consensus 638 ~g~~l~S~s~D~tV~lwdl~~~~--------------------------------~~--------------~~l~gH~-- 669 (1358)
|..+++.++|+++++|+.+.+- .+ ..|.||.
T Consensus 354 -g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 354 -GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred -CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 8999999999999999987641 11 2234663
Q ss_pred CCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecceecCcccccC
Q 000673 670 NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSS 749 (1358)
Q Consensus 670 ~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~ 749 (1358)
++-..+.|+|||++|++ +|.||.+++||.+|-+++..+++|...++.+.|.+.....+++++
T Consensus 433 Gys~~v~fSpDG~~l~S--------GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~---------- 494 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCS--------GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG---------- 494 (503)
T ss_pred CceeeEEEcCCCCeEEe--------ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecc----------
Confidence 45678999999999994 344599999999999999999999999999988875554454443
Q ss_pred CccccccCCcEEEEe
Q 000673 750 LLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 750 ~l~~~~~D~tvr~W~ 764 (1358)
-||.|++|+
T Consensus 495 ------w~G~Ikiwd 503 (503)
T KOG0282|consen 495 ------WDGLIKIWD 503 (503)
T ss_pred ------cCceeEecC
Confidence 389999995
No 66
>PTZ00421 coronin; Provisional
Probab=99.79 E-value=6.1e-18 Score=207.31 Aligned_cols=171 Identities=16% Similarity=0.219 Sum_probs=138.4
Q ss_pred EEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC-------cEEEEEecCCCcEEEEEeCCCCCCCC
Q 000673 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEHP 637 (1358)
Q Consensus 565 ~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg-------~~l~~~~~H~~~V~~l~~spd~~~~~ 637 (1358)
.+.||++.|++++|+| .++ ++|+|||.|++|++||+.++ +++..+.+|...|.+++|+|+.
T Consensus 70 ~l~GH~~~V~~v~fsP----~d~----~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~---- 137 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNP----FDP----QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA---- 137 (493)
T ss_pred eEeCCCCCEEEEEEcC----CCC----CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC----
Confidence 4789999999999984 266 89999999999999999765 3577899999999999999982
Q ss_pred CCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeC
Q 000673 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1358)
Q Consensus 638 ~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~G 717 (1358)
+++|++++.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++. |++|+|||+++++.+.++.+
T Consensus 138 -~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~--------Dg~IrIwD~rsg~~v~tl~~ 208 (493)
T PTZ00421 138 -MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK--------DKKLNIIDPRDGTIVSSVEA 208 (493)
T ss_pred -CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC--------CCEEEEEECCCCcEEEEEec
Confidence 368999999999999999999999999999999999999999999996543 49999999999999999999
Q ss_pred CCCceE-EEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCcc
Q 000673 718 TASHSM-FDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1358)
Q Consensus 718 H~~~v~-~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~ 769 (1358)
|..... ...|++........|. +-..|+++++||++...
T Consensus 209 H~~~~~~~~~w~~~~~~ivt~G~-------------s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 209 HASAKSQRCLWAKRKDLIITLGC-------------SKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CCCCcceEEEEcCCCCeEEEEec-------------CCCCCCeEEEEeCCCCC
Confidence 986543 2334432211111110 11248999999987554
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=5.6e-18 Score=176.98 Aligned_cols=199 Identities=18% Similarity=0.180 Sum_probs=166.8
Q ss_pred eecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
..+..|.++|.++.|--+..| .++.+.|.+|++ |+...+.+++++.||...|..++.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY----~ltcGsdrtvrL---------------WNp~rg~liktYsghG~EVlD~~~s--- 68 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNY----CLTCGSDRTVRL---------------WNPLRGALIKTYSGHGHEVLDAALS--- 68 (307)
T ss_pred eeecccccceEEEEEccCCCE----EEEcCCCceEEe---------------ecccccceeeeecCCCceeeecccc---
Confidence 345678899999998888888 677778999999 5566788999999999999999976
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC--c
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--R 660 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~--~ 660 (1358)
.|. ..++||+.|+.|.+||+.+|+.+++|.+|.+.|+.+.|+.+ ...++||+.|.++++||-++. +
T Consensus 69 --~Dn----skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee------sSVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 69 --SDN----SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE------SSVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred --ccc----cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCc------ceEEEeccccceeEEEEcccCCCC
Confidence 444 89999999999999999999999999999999999999988 789999999999999998864 6
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecce
Q 000673 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1358)
Q Consensus 661 ~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~ 740 (1358)
+++.+..-...|.+|... +..|+. |+.| |++|.||++.|++-.-+-||. |+++.|.+
T Consensus 137 PiQildea~D~V~Si~v~--~heIva------GS~D--GtvRtydiR~G~l~sDy~g~p--it~vs~s~----------- 193 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDVA--EHEIVA------GSVD--GTVRTYDIRKGTLSSDYFGHP--ITSVSFSK----------- 193 (307)
T ss_pred ccchhhhhcCceeEEEec--ccEEEe------eccC--CcEEEEEeecceeehhhcCCc--ceeEEecC-----------
Confidence 788888777889998886 455663 4554 999999999999988888885 65555553
Q ss_pred ecCcccccCCccccccCCcEEEEe
Q 000673 741 LNGNTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 741 l~g~~~~s~~l~~~~~D~tvr~W~ 764 (1358)
+|+.++.++| |.++|..|
T Consensus 194 -d~nc~La~~l-----~stlrLlD 211 (307)
T KOG0316|consen 194 -DGNCSLASSL-----DSTLRLLD 211 (307)
T ss_pred -CCCEEEEeec-----cceeeecc
Confidence 3455666666 99999987
No 68
>PTZ00420 coronin; Provisional
Probab=99.78 E-value=1.4e-17 Score=205.09 Aligned_cols=143 Identities=19% Similarity=0.247 Sum_probs=122.2
Q ss_pred CceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCc--------EEEEEecCCCcEEEEEeC
Q 000673 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--------LITVMHHHVAPVRQIILS 630 (1358)
Q Consensus 559 t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~--------~l~~~~~H~~~V~~l~~s 630 (1358)
...++..+.||.+.|++++|+| .++ ++|+|||.|++|++||+.++. ++..+.+|.+.|.+++|+
T Consensus 63 r~~~v~~L~gH~~~V~~lafsP----~~~----~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~ 134 (568)
T PTZ00420 63 RKPPVIKLKGHTSSILDLQFNP----CFS----EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWN 134 (568)
T ss_pred CCceEEEEcCCCCCEEEEEEcC----CCC----CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEEC
Confidence 3457788999999999999984 224 899999999999999997642 455788999999999999
Q ss_pred CCCCCCCCCC-eEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 631 PPQTEHPWSD-CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 631 pd~~~~~~g~-~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
|+ +. .+++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|+++|. |+.|+|||++++
T Consensus 135 P~------g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~--------D~~IrIwD~Rsg 199 (568)
T PTZ00420 135 PM------NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV--------GKHMHIIDPRKQ 199 (568)
T ss_pred CC------CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec--------CCEEEEEECCCC
Confidence 98 55 56799999999999999999887776 5568999999999999996543 389999999999
Q ss_pred eEEEEEeCCCCceEE
Q 000673 710 ARERVLRGTASHSMF 724 (1358)
Q Consensus 710 ~~~~~l~GH~~~v~~ 724 (1358)
+.+.++.+|.+.+..
T Consensus 200 ~~i~tl~gH~g~~~s 214 (568)
T PTZ00420 200 EIASSFHIHDGGKNT 214 (568)
T ss_pred cEEEEEecccCCcee
Confidence 999999999876543
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=3.5e-19 Score=192.03 Aligned_cols=228 Identities=19% Similarity=0.215 Sum_probs=182.8
Q ss_pred ccccccCCccccccccCCCCCC----CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCC
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAG----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGA 553 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~----~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~ 553 (1358)
+.+++.++.+.+|+..+.+-.. +....|.-+..+|.|+.|..+... +++|+.||.|++|
T Consensus 228 LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM----lAsGsqDGkIKvW------------- 290 (508)
T KOG0275|consen 228 LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM----LASGSQDGKIKVW------------- 290 (508)
T ss_pred EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH----hhccCcCCcEEEE-------------
Confidence 5566678889999987765543 344556667889999876555554 9999999999994
Q ss_pred ccccCCceEEEEEe-cCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCC
Q 000673 554 SLKVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPP 632 (1358)
Q Consensus 554 ~~d~~t~~~~~~l~-gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd 632 (1358)
.+.+|.|++.|. .|+..|+|+.|+ .|+ ..++|+|.|.++|+--+.+|+++..|.||+..|+...|.+|
T Consensus 291 --ri~tG~ClRrFdrAHtkGvt~l~FS-----rD~----SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 291 --RIETGQCLRRFDRAHTKGVTCLSFS-----RDN----SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred --EEecchHHHHhhhhhccCeeEEEEc-----cCc----chhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 467999999986 899999999998 666 89999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCC--------------------------------------------
Q 000673 633 QTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH-------------------------------------------- 668 (1358)
Q Consensus 633 ~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH-------------------------------------------- 668 (1358)
|..+++++.||+|++|+.++.+|+.+|..-
T Consensus 360 ------G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSG 433 (508)
T KOG0275|consen 360 ------GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSG 433 (508)
T ss_pred ------CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccC
Confidence 999999999999999999988776655321
Q ss_pred ---CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecceecCcc
Q 000673 669 ---PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNT 745 (1358)
Q Consensus 669 ---~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~ 745 (1358)
.+...+.+.+|.|.+++|.+ +|+.+|.+.+.+|.+++++.-|...++.+...+.
T Consensus 434 kREgGdFi~~~lSpkGewiYcig--------ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH--------------- 490 (508)
T KOG0275|consen 434 KREGGDFINAILSPKGEWIYCIG--------EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH--------------- 490 (508)
T ss_pred CccCCceEEEEecCCCcEEEEEc--------cCcEEEEEEeecCceeeeeecccccccccccCcc---------------
Confidence 11122345677777777433 4599999999999999999999988887755432
Q ss_pred cccCCccccccCCcEEEEe
Q 000673 746 SVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 746 ~~s~~l~~~~~D~tvr~W~ 764 (1358)
-+++-+-++|+.+|.|.
T Consensus 491 --qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 --QNLLASYSEDGLLKLWK 507 (508)
T ss_pred --cchhhhhcccchhhhcC
Confidence 22344456799999993
No 70
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=1.1e-17 Score=197.12 Aligned_cols=216 Identities=20% Similarity=0.217 Sum_probs=171.5
Q ss_pred cccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccc
Q 000673 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1358)
Q Consensus 477 ~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d 556 (1358)
.+.....+.++-+|...... +...+.+|...|+|+....+.. +++|+.|.++++|.
T Consensus 73 ~l~~g~~D~~i~v~~~~~~~----P~~~LkgH~snVC~ls~~~~~~-----~iSgSWD~TakvW~--------------- 128 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQAE----PLYTLKGHKSNVCSLSIGEDGT-----LISGSWDSTAKVWR--------------- 128 (745)
T ss_pred ceEeecccceEEEEecCCCC----chhhhhccccceeeeecCCcCc-----eEecccccceEEec---------------
Confidence 46667778888889887764 4567799999999965433333 79999999999954
Q ss_pred cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCC
Q 000673 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1358)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~ 636 (1358)
.+++...+.||+..|+++++-| + +.++|||.|++||+|. .++++++|.+|++.|+.+++-|+
T Consensus 129 --~~~l~~~l~gH~asVWAv~~l~-----e-----~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~---- 190 (745)
T KOG0301|consen 129 --IGELVYSLQGHTASVWAVASLP-----E-----NTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDD---- 190 (745)
T ss_pred --chhhhcccCCcchheeeeeecC-----C-----CcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecC----
Confidence 3345667999999999999863 2 5899999999999997 48899999999999999999987
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 637 ~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
..|+|++.||.|++|++ +|+++..+.||.+.|+++...++++.+++. ++|+++|||+.. +++++++
T Consensus 191 ---~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~--------gEDrtlriW~~~--e~~q~I~ 256 (745)
T KOG0301|consen 191 ---SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST--------GEDRTLRIWKKD--ECVQVIT 256 (745)
T ss_pred ---CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe--------cCCceEEEeecC--ceEEEEe
Confidence 57999999999999999 799999999999999999987788888843 346999999985 8888877
Q ss_pred CCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 717 GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
-.+-.+..+ -|..++..++.|| ||.+|+|...
T Consensus 257 lPttsiWsa-~~L~NgDIvvg~S-----------------DG~VrVfT~~ 288 (745)
T KOG0301|consen 257 LPTTSIWSA-KVLLNGDIVVGGS-----------------DGRVRVFTVD 288 (745)
T ss_pred cCccceEEE-EEeeCCCEEEecc-----------------CceEEEEEec
Confidence 444455433 3333333333333 9999999654
No 71
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=7.7e-18 Score=187.60 Aligned_cols=219 Identities=14% Similarity=0.159 Sum_probs=166.1
Q ss_pred CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEe
Q 000673 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1358)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~s 579 (1358)
+..+.+..|++.|.-+.|..+++| |++++.|.+..+|.... |.. -+..+++.||..+|..+.|+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGky----LAsaSkD~Taiiw~v~~-----------d~~-~kl~~tlvgh~~~V~yi~wS 278 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKY----LASASKDSTAIIWIVVY-----------DVH-FKLKKTLVGHSQPVSYIMWS 278 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCee----EeeccCCceEEEEEEec-----------Ccc-eeeeeeeecccCceEEEEEC
Confidence 445567889999999998888888 99999999999977652 222 44678999999999999998
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCC
Q 000673 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1358)
Q Consensus 580 p~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~-~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~ 658 (1358)
||. ++|++|+.|..+++||+.+|.+.+.+. +|...+.+++|.|| |..+++|+.|+++..||++.
T Consensus 279 -----PDd----ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD------g~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 279 -----PDD----RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD------GFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred -----CCC----CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccC------CceeEecCCCCcEEEecCCc
Confidence 777 999999999999999999999988875 35678999999999 88999999999999999874
Q ss_pred CcEEEEecCCC-CCcEEEEEcCCCCEEEEEecCC----------------------------------------------
Q 000673 659 LRVERMFPGHP-NYPAKVVWDCPRGYIACLCRDH---------------------------------------------- 691 (1358)
Q Consensus 659 ~~~~~~l~gH~-~~V~~v~~spd~~~L~~g~~d~---------------------------------------------- 691 (1358)
. .+....|-. ..|.+++..+||++++..+.|-
T Consensus 344 n-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 344 N-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLW 422 (519)
T ss_pred c-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence 3 111111111 1234444444444444333331
Q ss_pred --------------------------------ccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecc
Q 000673 692 --------------------------------SRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGS 739 (1358)
Q Consensus 692 --------------------------------sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs 739 (1358)
..|+++|+.||||+.++|+++.++.||+..|.++.+.+....
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~------ 496 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE------ 496 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH------
Confidence 224455699999999999999999999999987766554332
Q ss_pred eecCcccccCCccccccCCcEEEEeCC
Q 000673 740 VLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 740 ~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
.+-+.+.|||||+|...
T Consensus 497 ----------m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 497 ----------MFASASDDGTIRIWGPS 513 (519)
T ss_pred ----------HhhccCCCCeEEEecCC
Confidence 23334569999999643
No 72
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.6e-17 Score=172.56 Aligned_cols=189 Identities=18% Similarity=0.243 Sum_probs=153.5
Q ss_pred ccccccCCccccccccCCCCCCCceeec-ccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDF-VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~-~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d 556 (1358)
+++...+..+++|+...+... .+...+ .+|...|.+++..+...| |++|+.|+++.||.=.
T Consensus 30 lAscg~Dk~vriw~~~~~~s~-~ck~vld~~hkrsVRsvAwsp~g~~----La~aSFD~t~~Iw~k~------------- 91 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDSW-TCKTVLDDGHKRSVRSVAWSPHGRY----LASASFDATVVIWKKE------------- 91 (312)
T ss_pred EEeecCCceEEEEecCCCCcE-EEEEeccccchheeeeeeecCCCcE----EEEeeccceEEEeecC-------------
Confidence 444555667788887642211 222222 479999999997777766 9999999999995421
Q ss_pred cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC---cEEEEEecCCCcEEEEEeCCCC
Q 000673 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQ 633 (1358)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg---~~l~~~~~H~~~V~~l~~spd~ 633 (1358)
-.+-+++.+|.||.+.|.|++|+ ++| .+|+++|.|++|-||.+..+ +++..+..|+.-|..+.|+|.
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws-----~sG----~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt- 161 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWS-----ASG----NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT- 161 (312)
T ss_pred CCceeEEeeeeccccceeEEEEc-----CCC----CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC-
Confidence 12346899999999999999998 788 99999999999999999743 578899999999999999998
Q ss_pred CCCCCCCeEEEEeCCCcEEEEECC---CCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 634 TEHPWSDCFLSVGEDFSVALASLE---TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 634 ~~~~~g~~l~S~s~D~tV~lwdl~---~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
..+|+|+|.|++|++|.-. ...|++++.+|.+.|++++|+|.|..|++ .+.|++|+||-..
T Consensus 162 -----~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s--------~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 162 -----EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVS--------CSDDGTVSIWRLY 225 (312)
T ss_pred -----cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEE--------ecCCcceEeeeec
Confidence 6899999999999999866 35789999999999999999999999984 2336999999854
No 73
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=8e-18 Score=203.62 Aligned_cols=217 Identities=19% Similarity=0.125 Sum_probs=169.5
Q ss_pred eecc-cCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccC--------------------------C-C-CCC
Q 000673 503 DDFV-HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH--------------------------N-S-PGA 553 (1358)
Q Consensus 503 ~~~~-~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~--------------------------~-~-~~~ 553 (1358)
+.+. .|.+.|.++.|..+++| ||+|++||.|+||..-..... . . ...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKy----LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKY----LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eccccccCCcEEEEEeCCCCce----eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 3344 79999999999999999 999999999999986430000 0 0 000
Q ss_pred c---------cc--------cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEE
Q 000673 554 S---------LK--------VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV 616 (1358)
Q Consensus 554 ~---------~d--------~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~ 616 (1358)
. .. .-..++++.|.||.+.|..|.|+ .+++|+|+|+|+|||||++...+|++.
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS----------Kn~fLLSSSMDKTVRLWh~~~~~CL~~ 405 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS----------KNNFLLSSSMDKTVRLWHPGRKECLKV 405 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccc----------cCCeeEeccccccEEeecCCCcceeeE
Confidence 0 00 00235778899999999999997 237999999999999999999999999
Q ss_pred EecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccC
Q 000673 617 MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1358)
Q Consensus 617 ~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD 696 (1358)
| .|.+.|+|++|+|-. .++|+|||-|+.||||++...+.+.-..-+ .-|++++|.|||++.++|+.+
T Consensus 406 F-~HndfVTcVaFnPvD-----DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~------ 472 (712)
T KOG0283|consen 406 F-SHNDFVTCVAFNPVD-----DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFN------ 472 (712)
T ss_pred E-ecCCeeEEEEecccC-----CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEec------
Confidence 9 699999999999973 689999999999999999998888776666 589999999999999988765
Q ss_pred CCCeEEEEECCCCeEEEEEe--C-------CCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeC
Q 000673 697 AVDVLFIWDVKTGARERVLR--G-------TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 697 ~DgtV~vWd~~tg~~~~~l~--G-------H~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~ 765 (1358)
|.+++|+.+.-++...++ - |. .|+.++|++.... -++-.+.|.+||+.+.
T Consensus 473 --G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~----------------~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 473 --GYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPD----------------EVLVTSNDSRIRIYDG 531 (712)
T ss_pred --cEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCC----------------eEEEecCCCceEEEec
Confidence 899999998766654432 1 22 6888877753221 1223345999999998
No 74
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=9.5e-18 Score=177.27 Aligned_cols=230 Identities=14% Similarity=0.064 Sum_probs=175.8
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
+.....++.+++|+...+ ..++..|++|...|.++....-.. ..+++++-||+|++|. .
T Consensus 76 ~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH~~EV~Svdwn~~~r---~~~ltsSWD~TiKLW~---------------~ 134 (311)
T KOG0277|consen 76 VIAASGDGSLRLFDLTMP---SKPIHKFKEHKREVYSVDWNTVRR---RIFLTSSWDGTIKLWD---------------P 134 (311)
T ss_pred EEEEecCceEEEeccCCC---CcchhHHHhhhhheEEeccccccc---eeEEeeccCCceEeec---------------C
Confidence 556777899999994332 246788999999999965322222 2478889999999933 3
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCC
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~ 637 (1358)
.-+..++++.||...|...+|+| ..+ ++++|+|.|++.++||++.......+..|...+.|+.|+.-+
T Consensus 135 ~r~~Sv~Tf~gh~~~Iy~a~~sp----~~~----nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~---- 202 (311)
T KOG0277|consen 135 NRPNSVQTFNGHNSCIYQAAFSP----HIP----NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYN---- 202 (311)
T ss_pred CCCcceEeecCCccEEEEEecCC----CCC----CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccC----
Confidence 34557889999999999999997 334 899999999999999997543334499999999999998753
Q ss_pred CCCeEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC-eEEEEE
Q 000673 638 WSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVL 715 (1358)
Q Consensus 638 ~g~~l~S~s~D~tV~lwdl~~~-~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg-~~~~~l 715 (1358)
...+++|+.|+.|+.||++.- .++..+.||.-.|..|+|+|...-++ ++++-|-++||||.+.+ .++.+.
T Consensus 203 -~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL-------aSasYDmT~riw~~~~~ds~~e~~ 274 (311)
T KOG0277|consen 203 -HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL-------ASASYDMTVRIWDPERQDSAIETV 274 (311)
T ss_pred -CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh-------hhccccceEEecccccchhhhhhh
Confidence 468999999999999999975 46788999999999999999765544 12333479999999864 456677
Q ss_pred eCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEe
Q 000673 716 RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 716 ~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~ 764 (1358)
.-|+..+..+.++. ..++.+-++.-|..+.+|+
T Consensus 275 ~~HtEFv~g~Dws~----------------~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 275 DHHTEFVCGLDWSL----------------FDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hccceEEecccccc----------------ccCceeeecccccceeeec
Confidence 78887776554442 2334444556699999996
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=1.2e-16 Score=169.74 Aligned_cols=127 Identities=23% Similarity=0.351 Sum_probs=114.2
Q ss_pred cCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCc
Q 000673 533 FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN 612 (1358)
Q Consensus 533 ~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~ 612 (1358)
..|.|.|..|. +.++++.++.|.....|+.|. |+| +++++||.|..+-+||++..-
T Consensus 167 GlG~v~ILsyp---------------sLkpv~si~AH~snCicI~f~-----p~G----ryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 167 GLGCVEILSYP---------------SLKPVQSIKAHPSNCICIEFD-----PDG----RYFATGSADALVSLWDVDELI 222 (313)
T ss_pred CCceEEEEecc---------------ccccccccccCCcceEEEEEC-----CCC----ceEeeccccceeeccChhHhh
Confidence 34778885543 555889999999999999997 888 999999999999999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecC
Q 000673 613 LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1358)
Q Consensus 613 ~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d 690 (1358)
|++.|..+.-||+.|.|+-+ |++||++|.|+.|-|=++++|..+..++ +.++...|+|+|...+|+-+|.|
T Consensus 223 C~R~isRldwpVRTlSFS~d------g~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSHD------GRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeeccccCceEEEEeccC------cceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 99999999999999999999 9999999999999999999999998887 56788999999999999976654
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=8.1e-18 Score=177.77 Aligned_cols=190 Identities=16% Similarity=0.186 Sum_probs=151.7
Q ss_pred EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000673 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1358)
Q Consensus 527 ~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lW 606 (1358)
.++.++.||++++++.. ....+++.++.|...|.++.|++ .+. ..++++|.|+|||+|
T Consensus 75 ~~~~a~GDGSLrl~d~~--------------~~s~Pi~~~kEH~~EV~Svdwn~----~~r----~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLT--------------MPSKPIHKFKEHKREVYSVDWNT----VRR----RIFLTSSWDGTIKLW 132 (311)
T ss_pred eEEEEecCceEEEeccC--------------CCCcchhHHHhhhhheEEecccc----ccc----eeEEeeccCCceEee
Confidence 47888899999995421 22338899999999999999985 333 778888999999999
Q ss_pred eCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEE
Q 000673 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1358)
Q Consensus 607 Dl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~ 686 (1358)
|...++.+++|.||...|.+..|+|.. .++++++|.|++.++||++..-....++.|...+.++.|+.-+..++.
T Consensus 133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~-----~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 133 DPNRPNSVQTFNGHNSCIYQAAFSPHI-----PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred cCCCCcceEeecCCccEEEEEecCCCC-----CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence 999999999999999999999999984 689999999999999999865444459999999999999875555442
Q ss_pred EecCCccccCCCCeEEEEECCC-CeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeC
Q 000673 687 LCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 687 g~~d~sgssD~DgtV~vWd~~t-g~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~ 765 (1358)
+++.|+.||+||++. ...+.++.||.-.|-.+.|++.-. +...+.+. |-|+|+|+.
T Consensus 208 -------Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~-----------~lLaSasY-----DmT~riw~~ 264 (311)
T KOG0277|consen 208 -------TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA-----------SLLASASY-----DMTVRIWDP 264 (311)
T ss_pred -------ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh-----------hHhhhccc-----cceEEeccc
Confidence 333359999999987 567888999997777665554221 23344444 999999985
Q ss_pred C
Q 000673 766 Q 766 (1358)
Q Consensus 766 ~ 766 (1358)
.
T Consensus 265 ~ 265 (311)
T KOG0277|consen 265 E 265 (311)
T ss_pred c
Confidence 3
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.7e-17 Score=192.28 Aligned_cols=220 Identities=18% Similarity=0.179 Sum_probs=173.2
Q ss_pred CCccccccccCCCCCCCceeeccc-CCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceE
Q 000673 484 QDTVPRSEHVDSRQAGDGRDDFVH-KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1358)
Q Consensus 484 ~s~i~~W~~~~~~~~~~~~~~~~~-h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~ 562 (1358)
++.+.+||....+. ...+.+ |...|.++. |....+.+|+.||.|..++.. ..+.
T Consensus 238 ~g~v~iwD~~~~k~----~~~~~~~h~~rvg~la------W~~~~lssGsr~~~I~~~dvR---------------~~~~ 292 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKK----TRTLRGSHASRVGSLA------WNSSVLSSGSRDGKILNHDVR---------------ISQH 292 (484)
T ss_pred CCeEEEEehhhccc----cccccCCcCceeEEEe------ccCceEEEecCCCcEEEEEEe---------------cchh
Confidence 33445555443322 223344 788888866 667779999999999995543 2222
Q ss_pred E-EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCe
Q 000673 563 R-QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1358)
Q Consensus 563 ~-~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~ 641 (1358)
. .++.+|...|..+.|+ +|+ .+++||+.|+.+.|||....+++..+..|.+.|.+++|+|-. ...
T Consensus 293 ~~~~~~~H~qeVCgLkws-----~d~----~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q-----~~l 358 (484)
T KOG0305|consen 293 VVSTLQGHRQEVCGLKWS-----PDG----NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ-----SGL 358 (484)
T ss_pred hhhhhhcccceeeeeEEC-----CCC----CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc-----cCc
Confidence 2 2488999999999998 788 999999999999999998899999999999999999999973 468
Q ss_pred EEEEe--CCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCC
Q 000673 642 FLSVG--EDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1358)
Q Consensus 642 l~S~s--~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~ 719 (1358)
||+|+ .|++|++||..+++.+...... +.|..+.|++..+.|+++. |.++ +.|.||+..+-..+..+.||+
T Consensus 359 LAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sth----G~s~--n~i~lw~~ps~~~~~~l~gH~ 431 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTH----GYSE--NQITLWKYPSMKLVAELLGHT 431 (484)
T ss_pred eEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEec----CCCC--CcEEEEeccccceeeeecCCc
Confidence 88875 5999999999999999877644 5899999999998888654 4444 799999999999999999999
Q ss_pred CceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 720 SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 720 ~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
..|+.+...++ ...+++| . .|.|+|.|++-
T Consensus 432 ~RVl~la~SPd-g~~i~t~-----------a-----~DETlrfw~~f 461 (484)
T KOG0305|consen 432 SRVLYLALSPD-GETIVTG-----------A-----ADETLRFWNLF 461 (484)
T ss_pred ceeEEEEECCC-CCEEEEe-----------c-----ccCcEEecccc
Confidence 99988866653 2223333 2 39999999864
No 78
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.76 E-value=1.9e-17 Score=188.16 Aligned_cols=243 Identities=17% Similarity=0.210 Sum_probs=180.4
Q ss_pred cCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCC
Q 000673 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1358)
Q Consensus 507 ~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~d 586 (1358)
.|.+.|+...+++.+.. .+++++..+.++|+++......... .....+...|.||++.-.+|+|++
T Consensus 122 ~h~gEVnRaRymPQnp~---iVAt~t~~~dv~Vfd~tk~~s~~~~-----~~~~~Pdl~L~gH~~eg~glsWn~------ 187 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPN---IVATKTSSGDVYVFDYTKHPSKPKA-----SGECRPDLRLKGHEKEGYGLSWNR------ 187 (422)
T ss_pred cCCccchhhhhCCCCCc---EEEecCCCCCEEEEEeccCCCcccc-----cccCCCceEEEeeccccccccccc------
Confidence 36777887666665554 4667788899999766432221000 002345668999999888999983
Q ss_pred CCccCcEEEEEeCCCcEEEEeCCCCc-------EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECC--
Q 000673 587 GWSFNEVLVSGSMDCSIRIWDLGSGN-------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE-- 657 (1358)
Q Consensus 587 g~~~~~~L~Sgs~D~tI~lWDl~sg~-------~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~-- 657 (1358)
...-.|+||+.|++|++||+.... ....|.+|.+.|..++|+|-. .+.|++++.|+.+.|||+|
T Consensus 188 --~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-----~~lF~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 188 --QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-----EDLFGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred --ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc-----hhhheeecCCCeEEEEEcCCC
Confidence 234699999999999999997432 356799999999999999973 5799999999999999999
Q ss_pred CCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC-CeEEEEEeCCCCceEEEeeeccccccee
Q 000673 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSI 736 (1358)
Q Consensus 658 ~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t-g~~~~~l~GH~~~v~~~~~~~~~~~~~~ 736 (1358)
+.++.....+|...|++++|+|-+.+++. +++.|++|++||+|. .+.+.++.||.+.|..+.|++.......
T Consensus 261 ~~~~~~~~~ah~~~vn~~~fnp~~~~ilA-------T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 261 TSKPSHSVKAHSAEVNCVAFNPFNEFILA-------TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred CCCCcccccccCCceeEEEeCCCCCceEE-------eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeE
Confidence 56777888999999999999997777662 333359999999998 5688999999999998888875543211
Q ss_pred ecceecCcccccCCccccccCCcEEEEeCCCccccccccc--CCCCCccccccCCCCCC
Q 000673 737 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFST--ISEPSASHVRKGNSGKP 793 (1358)
Q Consensus 737 sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~~~~~~~~--~~~p~~~~~~~g~~~~~ 793 (1358)
++ ..|+++.+||+.....+..... -..|++..+-+||..++
T Consensus 334 -----------SS-----g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV 376 (422)
T KOG0264|consen 334 -----------SS-----GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV 376 (422)
T ss_pred -----------ec-----ccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc
Confidence 11 2499999999977655443221 14455556667776663
No 79
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.75 E-value=4.7e-16 Score=165.54 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=109.0
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCc-eEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH-VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~-~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lW 606 (1358)
|++|-+||.|.+|+ ..+| +.+..-.-|...|+.+.++ +|. .++++||.|.+.++|
T Consensus 162 ii~Ghe~G~is~~d---------------a~~g~~~v~s~~~h~~~Ind~q~s-----~d~----T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 162 IIAGHEDGSISIYD---------------ARTGKELVDSDEEHSSKINDLQFS-----RDR----TYFITGSKDTTAKLV 217 (327)
T ss_pred EEEecCCCcEEEEE---------------cccCceeeechhhhcccccccccc-----CCc----ceEEecccCccceee
Confidence 89999999999943 5554 4556667899999999998 777 999999999999999
Q ss_pred eCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCc--EEEEECCCC------------cEEEEecCCCCCc
Q 000673 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS--VALASLETL------------RVERMFPGHPNYP 672 (1358)
Q Consensus 607 Dl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~t--V~lwdl~~~------------~~~~~l~gH~~~V 672 (1358)
|..+-++++++.. .-||++.+++|. .+.++.|+.... |.-=+.+.| +.+...+||-++|
T Consensus 218 D~~tl~v~Kty~t-e~PvN~aaisP~------~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI 290 (327)
T KOG0643|consen 218 DVRTLEVLKTYTT-ERPVNTAAISPL------LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI 290 (327)
T ss_pred eccceeeEEEeee-cccccceecccc------cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc
Confidence 9999999999965 579999999998 455555543222 222222333 3456678999999
Q ss_pred EEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 673 ~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
++|+|||+|+..++ +.+||.||+.-++.
T Consensus 291 NsvAfhPdGksYsS--------GGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSS--------GGEDGYVRLHHFDS 318 (327)
T ss_pred ceeEECCCCccccc--------CCCCceEEEEEecc
Confidence 99999999998874 33459999986543
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=3.5e-17 Score=186.93 Aligned_cols=198 Identities=21% Similarity=0.216 Sum_probs=159.6
Q ss_pred CcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCc
Q 000673 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1358)
Q Consensus 510 ~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~ 589 (1358)
..|++..|-.++.. +++|...|.|++ |+ .++...++.+++|+.+|..+.|+| .|+
T Consensus 69 ~~v~s~~fR~DG~L----laaGD~sG~V~v--fD-------------~k~r~iLR~~~ah~apv~~~~f~~----~d~-- 123 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRL----LAAGDESGHVKV--FD-------------MKSRVILRQLYAHQAPVHVTKFSP----QDN-- 123 (487)
T ss_pred cceeEEEeecCCeE----EEccCCcCcEEE--ec-------------cccHHHHHHHhhccCceeEEEecc----cCC--
Confidence 46777776666666 899999999999 33 344445678899999999999985 444
Q ss_pred cCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC-cEEEEecCC
Q 000673 590 FNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGH 668 (1358)
Q Consensus 590 ~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~-~~~~~l~gH 668 (1358)
..+++|+.|+.+++||+.+......+.+|++.|+|.+|+|.+ +..++|||.||+|++||++.. ..+..+. |
T Consensus 124 --t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~-----~hivvtGsYDg~vrl~DtR~~~~~v~eln-h 195 (487)
T KOG0310|consen 124 --TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN-----DHIVVTGSYDGKVRLWDTRSLTSRVVELN-H 195 (487)
T ss_pred --eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC-----CeEEEecCCCceEEEEEeccCCceeEEec-C
Confidence 899999999999999999998766899999999999999984 579999999999999999987 5566665 8
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC-eEEEEEeCCCCceEEEeeecccccceeecceecCcccc
Q 000673 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSV 747 (1358)
Q Consensus 669 ~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg-~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~ 747 (1358)
..+|..+.+-|.|..+++++ + ..|+|||+-+| +++..+..|...|+++.+.. ++.-++
T Consensus 196 g~pVe~vl~lpsgs~iasAg-------G--n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s------------~~~rLl 254 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAG-------G--NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS------------DSTRLL 254 (487)
T ss_pred CCceeeEEEcCCCCEEEEcC-------C--CeEEEEEecCCceehhhhhcccceEEEEEeec------------CCceEe
Confidence 88999999999999999533 2 69999999865 55555555999998886652 113445
Q ss_pred cCCccccccCCcEEEEeCC
Q 000673 748 SSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 748 s~~l~~~~~D~tvr~W~~~ 766 (1358)
|++| |+.+|+.+..
T Consensus 255 S~sL-----D~~VKVfd~t 268 (487)
T KOG0310|consen 255 SGSL-----DRHVKVFDTT 268 (487)
T ss_pred eccc-----ccceEEEEcc
Confidence 5556 9999999743
No 81
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=4.1e-16 Score=180.51 Aligned_cols=162 Identities=18% Similarity=0.272 Sum_probs=131.0
Q ss_pred CcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCC
Q 000673 521 SFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1358)
Q Consensus 521 ~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D 600 (1358)
+.|.+..|+.+++||.|++|.....+- .-.+..+...|.+|...|+.|.|||- .. ++|++++.|
T Consensus 636 dPFD~~rLAVa~ddg~i~lWr~~a~gl--------~e~~~tPe~~lt~h~eKI~slRfHPL----Aa----dvLa~asyd 699 (1012)
T KOG1445|consen 636 DPFDDERLAVATDDGQINLWRLTANGL--------PENEMTPEKILTIHGEKITSLRFHPL----AA----DVLAVASYD 699 (1012)
T ss_pred CCCChHHeeecccCceEEEEEeccCCC--------CcccCCcceeeecccceEEEEEecch----hh----hHhhhhhcc
Confidence 334445799999999999987653222 12234577889999999999999973 22 789999999
Q ss_pred CcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc-EEEEecCCC-CCcEEEEEc
Q 000673 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR-VERMFPGHP-NYPAKVVWD 678 (1358)
Q Consensus 601 ~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~-~~~~l~gH~-~~V~~v~~s 678 (1358)
.||++||+.+++...+|.+|++.|..++|+|+ |+.+++++.||+|++|+.++++ +++.-+|-. ..--.|.|-
T Consensus 700 ~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd------Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wa 773 (1012)
T KOG1445|consen 700 STIELWDLANAKLYSRLVGHTDQIFGIAWSPD------GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWA 773 (1012)
T ss_pred ceeeeeehhhhhhhheeccCcCceeEEEECCC------CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEE
Confidence 99999999999999999999999999999999 9999999999999999998775 344443332 233578899
Q ss_pred CCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 679 pd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
-||++++|.++| .++. +.|.+||.++
T Consensus 774 cdgr~viv~Gfd--k~Se--RQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 774 CDGRIVIVVGFD--KSSE--RQVQMYDAQT 799 (1012)
T ss_pred ecCcEEEEeccc--ccch--hhhhhhhhhh
Confidence 999999999988 3333 7999999875
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=6.3e-17 Score=175.83 Aligned_cols=215 Identities=19% Similarity=0.193 Sum_probs=169.6
Q ss_pred ceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEec
Q 000673 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1358)
Q Consensus 501 ~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp 580 (1358)
..+.|..|.+.+++++ -+..| +++|+.|.+|+|++ ++....+..+..|.+.|+++.|.+
T Consensus 35 ~lF~~~aH~~sitavA--Vs~~~----~aSGssDetI~IYD---------------m~k~~qlg~ll~HagsitaL~F~~ 93 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALA--VSGPY----VASGSSDETIHIYD---------------MRKRKQLGILLSHAGSITALKFYP 93 (362)
T ss_pred ccccccccccceeEEE--eccee----EeccCCCCcEEEEe---------------ccchhhhcceeccccceEEEEecC
Confidence 3466788999999966 34456 99999999999943 555666778889999999999975
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc
Q 000673 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1358)
Q Consensus 581 ~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~ 660 (1358)
|- ...+|+||+.||.|.+|+....++++++++|.+.|+.++.+|. |++.++++.|+.+++||+-.|+
T Consensus 94 ----~~---S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS------~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 94 ----PL---SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS------GKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ----Cc---chhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC------CceEEEEcCCceeeeehhhcCc
Confidence 21 1259999999999999999999999999999999999999999 8999999999999999998887
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecCC--------------------------------ccccCCCCeEEEEECCC
Q 000673 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDH--------------------------------SRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 661 ~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~--------------------------------sgssD~DgtV~vWd~~t 708 (1358)
.-..++-- ...+.|.|+|.|.+++++..+. ..+.| |+.|++||-..
T Consensus 161 ~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d-~~~i~~~D~ds 238 (362)
T KOG0294|consen 161 VAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGD-NEWISLKDTDS 238 (362)
T ss_pred cceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecC-CceEEEeccCC
Confidence 65444321 2445588999888777776662 11233 58999999999
Q ss_pred CeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 709 GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 709 g~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
+.+...+.+|.+.|-...+.. +. ....+++++.||.||+|++.
T Consensus 239 ~~~~~~~~AH~~RVK~i~~~~-~~--------------~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 239 DTPLTEFLAHENRVKDIASYT-NP--------------EHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred CccceeeecchhheeeeEEEe-cC--------------CceEEEEeccCceEEEEEcc
Confidence 999999999999997664321 10 01245566679999999964
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.1e-16 Score=187.43 Aligned_cols=250 Identities=16% Similarity=0.171 Sum_probs=186.7
Q ss_pred cceEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeeccccccCCCCcccccccccccCCccc
Q 000673 409 SLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVP 488 (1358)
Q Consensus 409 ~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i~ 488 (1358)
+.||++.. .|+. +++|+..+... ......+++=....+|..+.+.+-+.+ .+.+.+++.+++
T Consensus 37 ~ryLfTgG-----RDg~------i~~W~~~~d~~--~~s~~~~asme~HsDWVNDiiL~~~~~-----tlIS~SsDtTVK 98 (735)
T KOG0308|consen 37 GRYLFTGG-----RDGI------IRLWSVTQDSN--EPSTPYIASMEHHSDWVNDIILCGNGK-----TLISASSDTTVK 98 (735)
T ss_pred CceEEecC-----CCce------EEEeccccccC--CcccchhhhhhhhHhHHhhHHhhcCCC-----ceEEecCCceEE
Confidence 44677665 4555 89997533321 111122332222344887765433332 256778899999
Q ss_pred cccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEe-
Q 000673 489 RSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL- 567 (1358)
Q Consensus 489 ~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~- 567 (1358)
+|+...... -....+..|.+.|.|++++..+.+ .+++|+-|+.|++|+.+.... -..+...++ ....+.
T Consensus 99 ~W~~~~~~~--~c~stir~H~DYVkcla~~ak~~~---lvaSgGLD~~IflWDin~~~~-~l~~s~n~~----t~~sl~s 168 (735)
T KOG0308|consen 99 VWNAHKDNT--FCMSTIRTHKDYVKCLAYIAKNNE---LVASGGLDRKIFLWDINTGTA-TLVASFNNV----TVNSLGS 168 (735)
T ss_pred EeecccCcc--hhHhhhhcccchheeeeecccCce---eEEecCCCccEEEEEccCcch-hhhhhcccc----ccccCCC
Confidence 999865431 345567889999999998544443 389999999999977652211 001111111 233344
Q ss_pred cCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC
Q 000673 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1358)
Q Consensus 568 gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~ 647 (1358)
||...|.+++.+ +.| ..+++|+..+.+++||.++++.+..+.||++.|.++..++| |..++|+|.
T Consensus 169 G~k~siYSLA~N-----~t~----t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD------Gt~~ls~sS 233 (735)
T KOG0308|consen 169 GPKDSIYSLAMN-----QTG----TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD------GTRLLSASS 233 (735)
T ss_pred CCccceeeeecC-----Ccc----eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC------CCeEeecCC
Confidence 999999999987 666 89999999999999999999999999999999999999999 899999999
Q ss_pred CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 648 D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
|++|+|||+...+|+.++..|...|+++.-+|+=.++++ +|+|+.|+.=|+++.
T Consensus 234 DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs--------G~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 234 DGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS--------GGRDGNIYRTDLRNP 287 (735)
T ss_pred CceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe--------cCCCCcEEecccCCc
Confidence 999999999999999999999999999999999999994 344599999999983
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.74 E-value=2e-16 Score=195.75 Aligned_cols=236 Identities=16% Similarity=0.170 Sum_probs=188.1
Q ss_pred eeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccC----CCCCCccccCCceEEEEEecCCCCEEEEE
Q 000673 502 RDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH----NSPGASLKVNSHVSRQYFLGHTGAVLCLA 577 (1358)
Q Consensus 502 ~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~----~~~~~~~d~~t~~~~~~l~gH~~~V~~l~ 577 (1358)
......|.+.|+|+.+.+++.| +++|++|+.|.||.... ... ..+++.-+++..+++..|.||.+.|..+.
T Consensus 62 l~~m~~h~~sv~CVR~S~dG~~----lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~ 136 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDGSY----LASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN 136 (942)
T ss_pred heeeccccCceeEEEECCCCCe----EeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceec
Confidence 3445779999999998888887 99999999999988774 111 22345557788889999999999999999
Q ss_pred EeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECC
Q 000673 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1358)
Q Consensus 578 ~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~ 657 (1358)
|+ ||+ .+|+|+|.|++|.+||..+.+++.++.+|.+.|-.+.|.|- |++|||-+.|++|++|.+.
T Consensus 137 Ws-----p~~----~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~------Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 137 WS-----PDD----SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI------GKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred cC-----CCc----cEEEEecccceEEEEccccceeeeeeecccccccceEECCc------cCeeeeecCCceEEEEEcc
Confidence 98 777 99999999999999999999999999999999999999999 9999999999999999988
Q ss_pred CCcEEEEecCCC------CCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeeccc
Q 000673 658 TLRVERMFPGHP------NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI 731 (1358)
Q Consensus 658 ~~~~~~~l~gH~------~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~ 731 (1358)
+..+.+.+.++- .....+.|+|||.||++... -...-.++.|.+-.+.+....|-||.+.+..+.|.+..
T Consensus 202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA----~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l 277 (942)
T KOG0973|consen 202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA----VNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL 277 (942)
T ss_pred cceeeEeeccchhhCCCcceeeecccCCCcCeecchhh----ccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence 887877776553 35679999999999996542 22223589999999999999999999999999988643
Q ss_pred ccceeecceecCcccccC----CccccccCCcEEEEeC
Q 000673 732 SMNSISGSVLNGNTSVSS----LLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 732 ~~~~~sGs~l~g~~~~s~----~l~~~~~D~tvr~W~~ 765 (1358)
-.. -..+|.-.-.+ -+-.-++|+++-+|..
T Consensus 278 fe~----~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 278 FER----NNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred hcc----ccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 221 11111111111 1112257999999975
No 85
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.73 E-value=7e-17 Score=180.67 Aligned_cols=224 Identities=21% Similarity=0.218 Sum_probs=172.3
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
+.....+..|++|++...+. ....++.+..+.|++..|.+++.+ ++..++|+.+++|+ +
T Consensus 190 latgg~Dr~Ik~W~v~~~k~--~~~~tLaGs~g~it~~d~d~~~~~----~iAas~d~~~r~Wn---------------v 248 (459)
T KOG0288|consen 190 LATGGSDRIIKLWNVLGEKS--ELISTLAGSLGNITSIDFDSDNKH----VIAASNDKNLRLWN---------------V 248 (459)
T ss_pred hhhcchhhhhhhhhcccchh--hhhhhhhccCCCcceeeecCCCce----EEeecCCCceeeee---------------c
Confidence 55566778899999876652 456677888899999998888887 89999999999954 4
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeC-----------------------------
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDL----------------------------- 608 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl----------------------------- 608 (1358)
...+...+|.||++.|+++.|...+ ..++||+.|.+|++||+
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~---------~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH 319 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSH---------SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGH 319 (459)
T ss_pred cchhhhhhhcccccceeeehhhccc---------cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecc
Confidence 4666788999999999999985321 22555555555555555
Q ss_pred ----------CCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCC----CCCcEE
Q 000673 609 ----------GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH----PNYPAK 674 (1358)
Q Consensus 609 ----------~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH----~~~V~~ 674 (1358)
+++.+......+ +.|+++..+++ |..+.+.+.|.++.+.|+++....+.|... ....+.
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~------g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMD------GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTR 392 (459)
T ss_pred cccceEEEeccCCceeeEeecC-cceeeEeeccC------CeEEeeecCCCceeeeecccccEEEEeeccccccccccce
Confidence 444444444444 48999999999 788999999999999999999888877532 234789
Q ss_pred EEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCc--eEEEeeecccccceeecceecCcccccCCcc
Q 000673 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH--SMFDHFCKGISMNSISGSVLNGNTSVSSLLL 752 (1358)
Q Consensus 675 v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~--v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~ 752 (1358)
+.|+|++.|++. |++| |.|+||++.+|+++..+.+.++. ++++.||+ +|+ .++
T Consensus 393 vvfSpd~~YvaA------GS~d--gsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-------sG~----------~Ll 447 (459)
T KOG0288|consen 393 VVFSPDGSYVAA------GSAD--GSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-------SGS----------GLL 447 (459)
T ss_pred eEECCCCceeee------ccCC--CcEEEEEccCceEEEEeccCCCCcceEEEEEcC-------CCc----------hhh
Confidence 999999999995 4554 99999999999999999876655 88777774 332 456
Q ss_pred ccccCCcEEEE
Q 000673 753 PIHEDGTFRQS 763 (1358)
Q Consensus 753 ~~~~D~tvr~W 763 (1358)
++.++..+++|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 77778889988
No 86
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.6e-18 Score=201.48 Aligned_cols=204 Identities=15% Similarity=0.236 Sum_probs=167.5
Q ss_pred cccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccC
Q 000673 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1358)
Q Consensus 505 ~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~ 584 (1358)
+..|...|.+........+ +++|+.|..+-+|. +..-.++..|.||...|.||.|+
T Consensus 24 ~~~hsaav~~lk~~~s~r~----~~~Gg~~~k~~L~~---------------i~kp~~i~S~~~hespIeSl~f~----- 79 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRS----LVTGGEDEKVNLWA---------------IGKPNAITSLTGHESPIESLTFD----- 79 (825)
T ss_pred hhhhhhhhceeeeecccee----eccCCCceeecccc---------------ccCCchhheeeccCCcceeeecC-----
Confidence 3457777777665555566 88888776665532 22222445689999999999998
Q ss_pred CCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEE
Q 000673 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1358)
Q Consensus 585 ~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~ 664 (1358)
++. .+|+.|+.||+|++||+..++.++++.||...+.++.|+|- +.++++|+.|.-+++||++..-|.+.
T Consensus 80 ~~E----~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~------~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 80 TSE----RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY------GEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred cch----hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc------eEEeccccccccceehhhhccCceee
Confidence 444 79999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecceecCc
Q 000673 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGN 744 (1358)
Q Consensus 665 l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~ 744 (1358)
+.+|...|..+.|+|+|+++++|+. |++++|||...|++...|.+|...+..+.|.+...
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~e--------d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~------------ 209 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGE--------DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV------------ 209 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCC--------cceeeeecccccccccccccccccccccccCchhh------------
Confidence 9999988999999999999995332 59999999999999999999999998776553211
Q ss_pred ccccCCccccccCCcEEEEeCCC
Q 000673 745 TSVSSLLLPIHEDGTFRQSQIQN 767 (1358)
Q Consensus 745 ~~~s~~l~~~~~D~tvr~W~~~~ 767 (1358)
...+++ .|+++|.|+++.
T Consensus 210 Lla~Gs-----~d~tv~f~dlet 227 (825)
T KOG0267|consen 210 LLAPGS-----SDRTVRFWDLET 227 (825)
T ss_pred hhccCC-----CCceeeeeccce
Confidence 112233 499999999873
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=8.2e-15 Score=151.98 Aligned_cols=205 Identities=18% Similarity=0.198 Sum_probs=157.3
Q ss_pred ecccCCCcEEEEEeeccCcccCCEEEEEE-cCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 504 DFVHKEKIVSSSMVISESFYAPYAIVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~~lv~G~-~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
.|+-|.+.|..++|+.+..--...|++|+ .|..|++ -|..+|+..+.+.||++.|.+|- +
T Consensus 131 e~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~---------------tdc~~g~~~~a~sghtghilaly-s--- 191 (350)
T KOG0641|consen 131 EFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI---------------TDCGRGQGFHALSGHTGHILALY-S--- 191 (350)
T ss_pred eeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE---------------eecCCCCcceeecCCcccEEEEE-E---
Confidence 34557777777776655432222244432 3445555 24678889999999999999984 2
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEec--C-----CCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEE
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--H-----VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~--H-----~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwd 655 (1358)
=+| -.++|||+|.|||+||++-..++.++.. | ...|.++++.|. |+++++|-.|.+..+||
T Consensus 192 --wn~----~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps------grll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 192 --WNG----AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS------GRLLASGHADSSCMLYD 259 (350)
T ss_pred --ecC----cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC------cceeeeccCCCceEEEE
Confidence 234 7999999999999999999888887642 2 357999999998 99999999999999999
Q ss_pred CCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe-----EEEEEeCCCCceEEEeeecc
Q 000673 656 LETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA-----RERVLRGTASHSMFDHFCKG 730 (1358)
Q Consensus 656 l~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~-----~~~~l~GH~~~v~~~~~~~~ 730 (1358)
++.+++++.|..|...|.+|.|+|.-.|+++++.| ..|++-|+. |. .+.+...|.+.++...+.+.
T Consensus 260 irg~r~iq~f~phsadir~vrfsp~a~yllt~syd--------~~ikltdlq-gdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD--------MKIKLTDLQ-GDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred eeCCceeeeeCCCccceeEEEeCCCceEEEEeccc--------ceEEEeecc-cchhhcCceEEEEeccCceEEEEecCc
Confidence 99999999999999999999999999999976543 899999986 33 34666789999988777642
Q ss_pred cccceeecceecCcccccCCccccccCCcEEEEeC
Q 000673 731 ISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 731 ~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~ 765 (1358)
.- ++++.+.|.|.-.|-+
T Consensus 331 d~-----------------sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 331 DF-----------------SFISSSADKTATLWAL 348 (350)
T ss_pred cc-----------------eeeeccCcceEEEecc
Confidence 11 2344456999999954
No 88
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.72 E-value=1.4e-16 Score=181.09 Aligned_cols=216 Identities=18% Similarity=0.169 Sum_probs=164.2
Q ss_pred eecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
..+.+|...=+++. -+.+.+-.+++|+.|+.|.+|+.+.... +-+.-.+...+.+|+..|..++|||.+
T Consensus 171 l~L~gH~~eg~gls---Wn~~~~g~Lls~~~d~~i~lwdi~~~~~--------~~~~~~p~~~~~~h~~~VeDV~~h~~h 239 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLS---WNRQQEGTLLSGSDDHTICLWDINAESK--------EDKVVDPKTIFSGHEDVVEDVAWHPLH 239 (422)
T ss_pred eEEEeecccccccc---cccccceeEeeccCCCcEEEEecccccc--------CCccccceEEeecCCcceehhhccccc
Confidence 45677877433322 1222233599999999999977653322 112233677899999999999999632
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCC--CCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC-
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL- 659 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~--sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~- 659 (1358)
..+++|++.|+.+.|||++ +.++.+...+|+++|+|++|+|-+ +..||+||.|++|+|||+|+.
T Consensus 240 --------~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~-----~~ilAT~S~D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 240 --------EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN-----EFILATGSADKTVALWDLRNLN 306 (422)
T ss_pred --------hhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC-----CceEEeccCCCcEEEeechhcc
Confidence 3899999999999999999 667778889999999999999984 678999999999999999975
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC-C-------------eEEEEEeCCCCceEEE
Q 000673 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-G-------------ARERVLRGTASHSMFD 725 (1358)
Q Consensus 660 ~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t-g-------------~~~~~l~GH~~~v~~~ 725 (1358)
+++.++.+|...|..|.|+|....++ +++..|+.+.|||+.. | +++..=.||++.|.-.
T Consensus 307 ~~lh~~e~H~dev~~V~WSPh~etvL-------ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df 379 (422)
T KOG0264|consen 307 KPLHTFEGHEDEVFQVEWSPHNETVL-------ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF 379 (422)
T ss_pred cCceeccCCCcceEEEEeCCCCCcee-------EecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccc
Confidence 57899999999999999999877766 3455579999999864 2 2234556999888766
Q ss_pred eeecccccceeecceecCcccccCCccccccCCcEEEEeC
Q 000673 726 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 726 ~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~ 765 (1358)
.+++... =.+.++++|+.+.+|.-
T Consensus 380 sWnp~eP----------------W~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 380 SWNPNEP----------------WTIASVAEDNILQIWQM 403 (422)
T ss_pred cCCCCCC----------------eEEEEecCCceEEEeec
Confidence 6664322 22345567999999964
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.71 E-value=1.2e-16 Score=178.81 Aligned_cols=125 Identities=17% Similarity=0.222 Sum_probs=102.3
Q ss_pred cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecC----CCcEEEEEeCCC
Q 000673 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH----VAPVRQIILSPP 632 (1358)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H----~~~V~~l~~spd 632 (1358)
..+..+......|. .|++|..+ ++| ..+.|++.|.++.+.|+++.+..+.|..- ..-++.+.|||+
T Consensus 329 ~Rs~~~~~sv~~gg-~vtSl~ls-----~~g----~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 329 IRSADKTRSVPLGG-RVTSLDLS-----MDG----LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred ccCCceeeEeecCc-ceeeEeec-----cCC----eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 33444455555553 89999987 677 88888899999999999998888877542 234889999999
Q ss_pred CCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCC--CcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEE
Q 000673 633 QTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1358)
Q Consensus 633 ~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~--~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd 705 (1358)
+.|+++||.||+|+||++.++++...+..... .|+++.|+|.|.+|+ ++|.++.+.+|.
T Consensus 399 ------~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll--------sadk~~~v~lW~ 459 (459)
T KOG0288|consen 399 ------GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL--------SADKQKAVTLWT 459 (459)
T ss_pred ------CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh--------cccCCcceEecC
Confidence 89999999999999999999999888765443 599999999999998 566679999993
No 90
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=3.8e-17 Score=194.49 Aligned_cols=203 Identities=19% Similarity=0.202 Sum_probs=158.3
Q ss_pred CCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEE
Q 000673 525 PYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1358)
Q Consensus 525 p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~ 604 (1358)
.+.|++.+.+|.|.+|+.+... ..+.+..|..|+..|+++.||+.+ ..+|+|||+||+|+
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~------------rnk~l~~f~EH~Rs~~~ldfh~te--------p~iliSGSQDg~vK 159 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSI------------RNKLLTVFNEHERSANKLDFHSTE--------PNILISGSQDGTVK 159 (839)
T ss_pred hhhheeecCCCcEEEEecCccc------------cchhhhHhhhhccceeeeeeccCC--------ccEEEecCCCceEE
Confidence 3458999999999997765321 123456789999999999999532 28999999999999
Q ss_pred EEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCCE
Q 000673 605 IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRGY 683 (1358)
Q Consensus 605 lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~-~~~~~~l~gH~~~V~~v~~spd~~~ 683 (1358)
+||++..+-..+|.+....|+.+.|+|.. +..|+++.+.|.+.+||++. .++...+..|.++|.++.|+|++.+
T Consensus 160 ~~DlR~~~S~~t~~~nSESiRDV~fsp~~-----~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~ 234 (839)
T KOG0269|consen 160 CWDLRSKKSKSTFRSNSESIRDVKFSPGY-----GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREW 234 (839)
T ss_pred EEeeecccccccccccchhhhceeeccCC-----CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCce
Confidence 99999999999999999999999999973 78999999999999999985 4678899999999999999999999
Q ss_pred EEEEecCCccccCCCCeEEEEECCCCeEEEEEeCC-CCceEEEeeecccccceeecceecCcccccCCccccccCCcEEE
Q 000673 684 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT-ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1358)
Q Consensus 684 L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH-~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~ 762 (1358)
|++|++ |+.|+|||+.+++.-....=+ .+.+..+.|-++......+.+ + ..|..|++
T Consensus 235 lATGGR--------DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcs-----------m---v~dtsV~V 292 (839)
T KOG0269|consen 235 LATGGR--------DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCS-----------M---VVDTSVHV 292 (839)
T ss_pred eeecCC--------CccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhh-----------c---cccceEEE
Confidence 997654 499999999765543333323 246666666665543333322 1 23888999
Q ss_pred EeCCCcccccccccCCCCC
Q 000673 763 SQIQNDERGVAFSTISEPS 781 (1358)
Q Consensus 763 W~~~~~~~~~~~~~~~~p~ 781 (1358)
||++ -|++|+.+
T Consensus 293 WDvr-------RPYIP~~t 304 (839)
T KOG0269|consen 293 WDVR-------RPYIPYAT 304 (839)
T ss_pred Eeec-------ccccccee
Confidence 9974 45666554
No 91
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=3.2e-17 Score=195.12 Aligned_cols=212 Identities=14% Similarity=0.160 Sum_probs=167.2
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
+++++..+.+.+|++..... ..+...|..|...++++.+ ..+.|+-|++|+.||.|++ ||+
T Consensus 103 IAT~s~nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldf---h~tep~iliSGSQDg~vK~---------------~Dl 163 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIR-NKLLTVFNEHERSANKLDF---HSTEPNILISGSQDGTVKC---------------WDL 163 (839)
T ss_pred heeecCCCcEEEEecCcccc-chhhhHhhhhccceeeeee---ccCCccEEEecCCCceEEE---------------Eee
Confidence 55667777888999866411 2455678999999999653 3455678999999999999 445
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC-cEEEEEecCCCcEEEEEeCCCCCCC
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEH 636 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg-~~l~~~~~H~~~V~~l~~spd~~~~ 636 (1358)
+..+...++.+....|..|.|+| ..+ ..++++...|.+++||++.. ++...|..|.++|.|+.|+|+
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp----~~~----~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn---- 231 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSP----GYG----NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN---- 231 (839)
T ss_pred ecccccccccccchhhhceeecc----CCC----ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC----
Confidence 56667788889999999999997 334 89999999999999999864 567889999999999999998
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCcEEEEecCC-CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC-CeEEEE
Q 000673 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGH-PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERV 714 (1358)
Q Consensus 637 ~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH-~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t-g~~~~~ 714 (1358)
+.+|||||.|+.|+|||..+++.-....-+ ..+|.+|+|.|+..+.+..| +.-.|..|+|||++. .-..++
T Consensus 232 --r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtc-----smv~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 232 --REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATC-----SMVVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred --CceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhh-----hccccceEEEEeecccccccee
Confidence 899999999999999999876543322222 24788999999988776433 223368999999976 456788
Q ss_pred EeCCCCceEEEee
Q 000673 715 LRGTASHSMFDHF 727 (1358)
Q Consensus 715 l~GH~~~v~~~~~ 727 (1358)
+..|++.++.+.+
T Consensus 305 ~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 305 FLEHTDSVTGIAW 317 (839)
T ss_pred eeccCccccceec
Confidence 9999987776644
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=9.1e-17 Score=188.00 Aligned_cols=233 Identities=14% Similarity=0.158 Sum_probs=177.1
Q ss_pred ccccCCccccccccCCCC--CCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 480 LTFCQDTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 480 ~t~~~s~i~~W~~~~~~~--~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
++..++.++.|+...... .......+..|...|..+.......- ++++++|-+|++|+.....
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t----lIS~SsDtTVK~W~~~~~~----------- 106 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT----LISASSDTTVKVWNAHKDN----------- 106 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc----eEEecCCceEEEeecccCc-----------
Confidence 333445566666543221 11124556778888877664444443 8999999999996654211
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC--cEEEEE--------e-cCCCcEEE
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVM--------H-HHVAPVRQ 626 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg--~~l~~~--------~-~H~~~V~~ 626 (1358)
.-|..++..|++.|.||++-. ++ ..++||||.|+.|++||+.+| +.+++| . |+..+|.+
T Consensus 107 --~~c~stir~H~DYVkcla~~a----k~----~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 107 --TFCMSTIRTHKDYVKCLAYIA----KN----NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred --chhHhhhhcccchheeeeecc----cC----ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 136778899999999999831 33 389999999999999999988 333332 3 78899999
Q ss_pred EEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 627 IILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 627 l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
++.++. |..|++|+..+.+++||.++++.+..+.||..-|..+..++||..+++ +++| |+|++||+
T Consensus 177 LA~N~t------~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls------~sSD--gtIrlWdL 242 (735)
T KOG0308|consen 177 LAMNQT------GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS------ASSD--GTIRLWDL 242 (735)
T ss_pred eecCCc------ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEee------cCCC--ceEEeeec
Confidence 999998 889999999999999999999999999999999999999999999994 4444 99999999
Q ss_pred CCCeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCc
Q 000673 707 KTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1358)
Q Consensus 707 ~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~ 768 (1358)
...+|+.++.-|...|... .|...-..+++|. +|+.+..=++++.
T Consensus 243 gqQrCl~T~~vH~e~VWaL-~~~~sf~~vYsG~----------------rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 243 GQQRCLATYIVHKEGVWAL-QSSPSFTHVYSGG----------------RDGNIYRTDLRNP 287 (735)
T ss_pred cccceeeeEEeccCceEEE-eeCCCcceEEecC----------------CCCcEEecccCCc
Confidence 9999999999999998777 4432222345554 4777776666654
No 93
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.70 E-value=3.3e-13 Score=154.31 Aligned_cols=384 Identities=16% Similarity=0.109 Sum_probs=232.2
Q ss_pred CCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCcccccccCCcceec
Q 000673 185 KNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKS 264 (1358)
Q Consensus 185 ~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~~~~~~~~l~e~ 264 (1358)
+++.-+.++|||..+++.++.+-- ....|.+++|+.. +++..-..+-.+.+.++.||+..... ..+
T Consensus 129 g~~~~phvriWdsv~L~TL~V~g~---f~~GV~~vaFsk~--~~G~~l~~vD~s~~h~lSVWdWqk~~---~~~------ 194 (626)
T KOG2106|consen 129 GRPLQPHVRIWDSVTLSTLHVIGF---FDRGVTCVAFSKI--NGGSLLCAVDDSNPHMLSVWDWQKKA---KLG------ 194 (626)
T ss_pred CCcCCCeeeecccccceeeeeecc---ccccceeeeeccc--CCCceEEEecCCCccccchhhchhhh---ccC------
Confidence 345568999999999988887753 3445999999976 65533333445678899999998742 111
Q ss_pred CCcccceEeccCcccCceEEEEecCC-cEEEEEecCceEEeecCCCcccceeeeeecceeeecCCCCCceEEEEeecccc
Q 000673 265 SSQLDMAILQNGVVEGGHLVSVATCG-NIIALVLKDHCIFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVV 343 (1358)
Q Consensus 265 ~~~~~~~~~~~~~~~~v~~vs~s~dg-~~~~~~~~~~~i~d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d 343 (1358)
.+ ....+.+-...|.|.+ +.+++.++.+-.||.++.+...+.. -..+.... ..+....|.+.+|
T Consensus 195 -----~v---k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~------~~fek~ek-k~Vl~v~F~engd 259 (626)
T KOG2106|consen 195 -----PV---KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQ------GIFEKREK-KFVLCVTFLENGD 259 (626)
T ss_pred -----cc---eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEe------eccccccc-eEEEEEEEcCCCC
Confidence 11 1223456777888765 4566666666655555666444433 22233333 6777788885444
Q ss_pred hhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCcc-CCCCCceeEeEeeccceEEEeeeecccc
Q 000673 344 AEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVS-YPSGVKFSIHFIQMSLYLLRMETVCFHV 422 (1358)
Q Consensus 344 ~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~f~~~~~~L~~v~s~~~~~ 422 (1358)
++.++++|.+.+|.... +.+.... .+...+.+++...+|
T Consensus 260 -----------------viTgDS~G~i~Iw~~~~----------~~~~k~~~aH~ggv~~L~~lr~G------------- 299 (626)
T KOG2106|consen 260 -----------------VITGDSGGNILIWSKGT----------NRISKQVHAHDGGVFSLCMLRDG------------- 299 (626)
T ss_pred -----------------EEeecCCceEEEEeCCC----------ceEEeEeeecCCceEEEEEecCc-------------
Confidence 88999999999998754 2221111 111111111111111
Q ss_pred cccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeeccccccCCCCcccccccccccCCccccccccCCCCCCCce
Q 000673 423 EETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGR 502 (1358)
Q Consensus 423 ~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~ 502 (1358)
+|.+|+. +..+.+|+..-.+...
T Consensus 300 ---------------------------tllSGgK---------------------------DRki~~Wd~~y~k~r~--- 322 (626)
T KOG2106|consen 300 ---------------------------TLLSGGK---------------------------DRKIILWDDNYRKLRE--- 322 (626)
T ss_pred ---------------------------cEeecCc---------------------------cceEEecccccccccc---
Confidence 1112221 1122333311110000
Q ss_pred eecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
..+...-+.|..++ . -.++ ++.|.....|.--. ++.+ ...+..||.+..+.++.|
T Consensus 323 ~elPe~~G~iRtv~---e--~~~d-i~vGTtrN~iL~Gt---------------~~~~-f~~~v~gh~delwgla~h--- 377 (626)
T KOG2106|consen 323 TELPEQFGPIRTVA---E--GKGD-ILVGTTRNFILQGT---------------LENG-FTLTVQGHGDELWGLATH--- 377 (626)
T ss_pred ccCchhcCCeeEEe---c--CCCc-EEEeeccceEEEee---------------ecCC-ceEEEEecccceeeEEcC---
Confidence 00111112333311 0 1111 55565554444322 2222 234556999999999998
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEE
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~ 662 (1358)
|+. +++++++.|+.+++|+ ..+++.+.. -..++.|+.|+|. | .++.|...|...+.|.++...+
T Consensus 378 --ps~----~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhps------g-~va~Gt~~G~w~V~d~e~~~lv 441 (626)
T KOG2106|consen 378 --PSK----NQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPS------G-VVAVGTATGRWFVLDTETQDLV 441 (626)
T ss_pred --CCh----hheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCc------c-eEEEeeccceEEEEecccceeE
Confidence 554 8999999999999999 445544332 3578999999998 7 8999999999999999996665
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC-CeEEE---EEeCCCCceEEEeeecccccceeec
Q 000673 663 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARER---VLRGTASHSMFDHFCKGISMNSISG 738 (1358)
Q Consensus 663 ~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t-g~~~~---~l~GH~~~v~~~~~~~~~~~~~~sG 738 (1358)
..-.. ..+++.++|+|+|.+|++|+.| +.||||-+.. |.... ..+| +.++.+.|+.
T Consensus 442 ~~~~d-~~~ls~v~ysp~G~~lAvgs~d--------~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~--------- 501 (626)
T KOG2106|consen 442 TIHTD-NEQLSVVRYSPDGAFLAVGSHD--------NHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSS--------- 501 (626)
T ss_pred EEEec-CCceEEEEEcCCCCEEEEecCC--------CeEEEEEECCCCcEEEEeeeecC--ceeEEeeecC---------
Confidence 54444 6789999999999999986543 8999998865 44433 3344 6787777763
Q ss_pred ceecCcccccCCccccccCCcEEEE
Q 000673 739 SVLNGNTSVSSLLLPIHEDGTFRQS 763 (1358)
Q Consensus 739 s~l~g~~~~s~~l~~~~~D~tvr~W 763 (1358)
+++++.+.+. |--+-.|
T Consensus 502 ---Ds~~~~~~S~-----d~eiLyW 518 (626)
T KOG2106|consen 502 ---DSQFLVSNSG-----DYEILYW 518 (626)
T ss_pred ---CCceEEeccC-----ceEEEEE
Confidence 2244444444 8888889
No 94
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=9.3e-13 Score=155.95 Aligned_cols=509 Identities=11% Similarity=0.032 Sum_probs=277.0
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcC-cCEEEeeeccccccccCcccccccccccCccc
Q 000673 17 HRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHS-APIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1358)
Q Consensus 17 h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~-~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1358)
..|+|+||+.+.+.||.|=.||.|.+|++.. + .-...++.||+ ..|.+|+++
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~--~--w~~~~vi~g~~drsIE~L~W~----------------------- 78 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN--N--WFLEPVIHGPEDRSIESLAWA----------------------- 78 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCC--C--ceeeEEEecCCCCceeeEEEc-----------------------
Confidence 3499999999999999999999999999995 3 33345566765 789999774
Q ss_pred ccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCccccccccccccccc
Q 000673 96 GKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDL 175 (1358)
Q Consensus 96 ~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~~ 175 (1358)
++.+|+|.+.+|+|+-||+.+++-+...... +..-.-....+..+...++|-.
T Consensus 79 -----e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~---gg~IWsiai~p~~~~l~Igcdd------------------- 131 (691)
T KOG2048|consen 79 -----EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN---GGAIWSIAINPENTILAIGCDD------------------- 131 (691)
T ss_pred -----cCCeEEeecCCceEEEEecccCceeEEecCC---CcceeEEEeCCccceEEeecCC-------------------
Confidence 4589999999999999999999877665443 3332222333333444555543
Q ss_pred ccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCccccc
Q 000673 176 VSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDR 255 (1358)
Q Consensus 176 ~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~~~ 255 (1358)
+.+.+.+....++.+...=++ ..+.+-++++... +--|++|+.||++++||....++-.
T Consensus 132 --------------Gvl~~~s~~p~~I~~~r~l~r-q~sRvLslsw~~~------~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 132 --------------GVLYDFSIGPDKITYKRSLMR-QKSRVLSLSWNPT------GTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred --------------ceEEEEecCCceEEEEeeccc-ccceEEEEEecCC------ccEEEecccCceEEEEEcCCCceEE
Confidence 567777777777765543211 2244666666532 3359999999999999998753211
Q ss_pred ccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce--EEeecCCCcccceeeeeecceeeecCCCCCce
Q 000673 256 EEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYV 333 (1358)
Q Consensus 256 ~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 333 (1358)
.....+... ......-|.+|.|..|+ .++++-..+. +||. ..++++..+ .|..+.
T Consensus 191 ~~~~~~d~l---------~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~-~~gTLiqS~------~~h~ad------ 247 (691)
T KOG2048|consen 191 IITMQLDRL---------SKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDS-IFGTLIQSH------SCHDAD------ 247 (691)
T ss_pred Eeeeccccc---------ccCCceEEEEEEEeecC-cEEEecCCceEEEEcc-cCcchhhhh------hhhhcc------
Confidence 000000000 00011224677777766 5566655555 7776 555555544 221111
Q ss_pred EEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeEeeccceEE
Q 000673 334 IGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLL 413 (1358)
Q Consensus 334 ~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~L~ 413 (1358)
+-.+.. +.+ ..++.+.+.|+.+..|+...... +++.........++ +.++...+. .++
T Consensus 248 Vl~Lav-~~~--------------~d~vfsaGvd~~ii~~~~~~~~~----~wv~~~~r~~h~hd-vrs~av~~~--~l~ 305 (691)
T KOG2048|consen 248 VLALAV-ADN--------------EDRVFSAGVDPKIIQYSLTTNKS----EWVINSRRDLHAHD-VRSMAVIEN--ALI 305 (691)
T ss_pred eeEEEE-cCC--------------CCeEEEccCCCceEEEEecCCcc----ceeeeccccCCccc-ceeeeeecc--eEE
Confidence 111222 111 12788899999999888876322 11111111112222 222222222 222
Q ss_pred EeeeecccccccccccCeEEEEe-cCCCCCCCC-cceeEEeecCccceeeeccccccCCCCcccccccccccCCcccccc
Q 000673 414 RMETVCFHVEETSQWRPYISVWS-LSQKHSGPG-KQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSE 491 (1358)
Q Consensus 414 ~v~s~~~~~~~~~~~~p~v~vws-~~~~~~~~~-~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~ 491 (1358)
+.. .|..+...+ .+-+. .....-+.- ....+...+. .++..-=..+.+.+|.
T Consensus 306 sgG-----~d~~l~i~~-s~~~~~~~h~~~~~~p~~~~v~~a~~--------------------~~L~~~w~~h~v~lwr 359 (691)
T KOG2048|consen 306 SGG-----RDFTLAICS-SREFKNMDHRQKNLFPASDRVSVAPE--------------------NRLLVLWKAHGVDLWR 359 (691)
T ss_pred ecc-----eeeEEEEcc-ccccCchhhhccccccccceeecCcc--------------------ceEEEEecccccccee
Confidence 111 111100000 00000 000000000 0000000000 0111111223444455
Q ss_pred ccCCCCCC-----CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEE
Q 000673 492 HVDSRQAG-----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF 566 (1358)
Q Consensus 492 ~~~~~~~~-----~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l 566 (1358)
.-..-+.+ .+..-+......+++.+..++..+ |+.+. -.+.+++...+... ++ -+.+...
T Consensus 360 lGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~----Ia~st-~~~~~iy~L~~~~~---------vk-~~~v~~~ 424 (691)
T KOG2048|consen 360 LGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNL----IAIST-VSRTKIYRLQPDPN---------VK-VINVDDV 424 (691)
T ss_pred ccCcccccccChhhheeeecCCccceeeeccCCCCCE----EEEee-ccceEEEEeccCcc---------ee-EEEeccc
Confidence 43322111 222222333456777676666665 66654 34566655543211 00 0011111
Q ss_pred ecCCCCEEEEEEeccccCCCCCccCcEEEEEe-CCCcEEEEeCCCCc--EEEEEe--cCCCcEEEEEeCCCCCCCCCCCe
Q 000673 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGN--LITVMH--HHVAPVRQIILSPPQTEHPWSDC 641 (1358)
Q Consensus 567 ~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs-~D~tI~lWDl~sg~--~l~~~~--~H~~~V~~l~~spd~~~~~~g~~ 641 (1358)
..-.-.+..+.|. -|+ +.++-++ .++.+.+.+++++. .+..+. ...++|+.+..+|+ |++
T Consensus 425 ~~~~~~a~~i~ft-----id~----~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd------G~y 489 (691)
T KOG2048|consen 425 PLALLDASAISFT-----IDK----NKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD------GNY 489 (691)
T ss_pred hhhhccceeeEEE-----ecC----ceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCC------CCE
Confidence 1123345667775 444 5555555 77788888877543 222222 34578999999999 999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 642 FLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 642 l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~sp-d~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
||..+.++.|.+|++++++.-.....-...++.++|+| +.+.|++ .+++ +.|+-+|++..
T Consensus 490 iaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvv------ats~--nQv~efdi~~~ 550 (691)
T KOG2048|consen 490 IAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVV------ATSN--NQVFEFDIEAR 550 (691)
T ss_pred EEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEE------EecC--CeEEEEecchh
Confidence 99999999999999998876544434456899999995 4455554 2343 89999999543
No 95
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.69 E-value=2.4e-15 Score=160.29 Aligned_cols=203 Identities=17% Similarity=0.199 Sum_probs=165.5
Q ss_pred cccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccC
Q 000673 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1358)
Q Consensus 505 ~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~ 584 (1358)
+.+|..++|.+.|-.+... |++.+.|....+|.-. .|+.+-++.||++.|+|+...
T Consensus 6 l~GHERplTqiKyN~eGDL----lFscaKD~~~~vw~s~---------------nGerlGty~GHtGavW~~Did----- 61 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDL----LFSCAKDSTPTVWYSL---------------NGERLGTYDGHTGAVWCCDID----- 61 (327)
T ss_pred cccCccccceEEecCCCcE----EEEecCCCCceEEEec---------------CCceeeeecCCCceEEEEEec-----
Confidence 5789999999887666665 8999999999996543 577889999999999999985
Q ss_pred CCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC-----CCcEEEEECC--
Q 000673 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-----DFSVALASLE-- 657 (1358)
Q Consensus 585 ~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~-----D~tV~lwdl~-- 657 (1358)
-+. ++++||+.|.++++||+.+|+++.+++- ..+|..+.|+++ |++++...+ -+.|.++|++
T Consensus 62 ~~s----~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~------gn~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 62 WDS----KHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFG------GNLILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred CCc----ceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccC------CcEEEEEehhhcCcceEEEEEEccCC
Confidence 344 8999999999999999999999999975 578999999999 776665543 4679999998
Q ss_pred -----CCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC-eEEEEEeCCCCceEEEeeeccc
Q 000673 658 -----TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGI 731 (1358)
Q Consensus 658 -----~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg-~~~~~l~GH~~~v~~~~~~~~~ 731 (1358)
..+++..++.+.+.++.+.|.|-+++|+.|. +||.|.+||+++| +.+..-+-|+..+...++.++.
T Consensus 131 ~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh--------e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~ 202 (327)
T KOG0643|consen 131 SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH--------EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR 202 (327)
T ss_pred hhhhcccCceEEecCCccceeeeeecccCCEEEEec--------CCCcEEEEEcccCceeeechhhhccccccccccCCc
Confidence 4567888999999999999999999999543 3599999999998 5667778898888777666533
Q ss_pred ccceeecceecCcccccCCccccccCCcEEEEeCCC
Q 000673 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1358)
Q Consensus 732 ~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~ 767 (1358)
.. .++| +.|.+-|+||...
T Consensus 203 T~-FiT~----------------s~Dttakl~D~~t 221 (327)
T KOG0643|consen 203 TY-FITG----------------SKDTTAKLVDVRT 221 (327)
T ss_pred ce-EEec----------------ccCccceeeeccc
Confidence 22 2233 3599999998753
No 96
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=7.6e-16 Score=166.33 Aligned_cols=229 Identities=14% Similarity=0.177 Sum_probs=171.4
Q ss_pred eecCccceeeeccccccCCCCcccccccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEE
Q 000673 452 GEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYG 531 (1358)
Q Consensus 452 ~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G 531 (1358)
..|..+|.|.+..-. +.+ .+...+.+.+..+|.++.. .+...+.||.+.|.++.|-++... +++|
T Consensus 144 ~~GHkDGiW~Vaa~~-----tqp--i~gtASADhTA~iWs~Esg----~CL~~Y~GH~GSVNsikfh~s~~L----~lTa 208 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADS-----TQP--ICGTASADHTARIWSLESG----ACLATYTGHTGSVNSIKFHNSGLL----LLTA 208 (481)
T ss_pred hcccccceeeehhhc-----CCc--ceeecccccceeEEeeccc----cceeeecccccceeeEEeccccce----EEEc
Confidence 456678888876321 111 2345566788899999865 567788999999999885444443 8899
Q ss_pred EcCCcEEEEEecCccc-------CC--------CC----------CCccccCCceEEEEEecCCCCEEEEEEeccccCCC
Q 000673 532 FFSGEIEVIQFDLFER-------HN--------SP----------GASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1358)
Q Consensus 532 ~~dG~I~i~~~~~~~~-------~~--------~~----------~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~d 586 (1358)
+.|++-.||.+..... .+ .+ .+.+...-..++..|.||.+.|.+..|- ..
T Consensus 209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL-----~g 283 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL-----AG 283 (481)
T ss_pred cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh-----cC
Confidence 9999999987321110 00 00 0001011124677899999999999995 45
Q ss_pred CCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC-cEEEEe
Q 000673 587 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMF 665 (1358)
Q Consensus 587 g~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~-~~~~~l 665 (1358)
| +.++++|+|.|..+||+++|+.++.+.||....+-+.-+|. .+++++.+.|.+.+|||.+.. ..+..|
T Consensus 284 g----~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt------QrLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 284 G----QQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT------QRLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred c----ceeeeeeccccceeeeeccCceeccccCcchhccccccCCc------ceEEEEeccCceeEeccchhhcceeeee
Confidence 5 89999999999999999999999999999999999998888 789999999999999999854 457889
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC-eEEEEEeCCC
Q 000673 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTA 719 (1358)
Q Consensus 666 ~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg-~~~~~l~GH~ 719 (1358)
+||...|+++.|.-+.+.+- ++| |.+|+|||+++. ..+.+++-.+
T Consensus 354 QGHtdtVTS~vF~~dd~vVS--------gSD-DrTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDDRVVS--------GSD-DRTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred cccccceeEEEEecCCceee--------cCC-CceEEEeeeccccCcceeeecCC
Confidence 99999999999997766543 333 699999999873 4566665443
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.69 E-value=7.1e-16 Score=162.47 Aligned_cols=222 Identities=18% Similarity=0.222 Sum_probs=173.4
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
-++.+.+-+.++|+..... ....| .|...|.+++|..+..+ |++|+.+..++|.+.+ .
T Consensus 74 aasaaadftakvw~a~tgd----elhsf-~hkhivk~~af~~ds~~----lltgg~ekllrvfdln--~----------- 131 (334)
T KOG0278|consen 74 AASAAADFTAKVWDAVTGD----ELHSF-EHKHIVKAVAFSQDSNY----LLTGGQEKLLRVFDLN--R----------- 131 (334)
T ss_pred hhhhcccchhhhhhhhhhh----hhhhh-hhhheeeeEEecccchh----hhccchHHHhhhhhcc--C-----------
Confidence 3455667788999987653 22332 46778999998888888 9999999999993332 1
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCC
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~ 637 (1358)
...+...+.||++.|..+.|. .. ++.++|.+.|++||+||.++|+.++++.- ..+|+++.++++
T Consensus 132 -p~App~E~~ghtg~Ir~v~wc-----~e----D~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~d----- 195 (334)
T KOG0278|consen 132 -PKAPPKEISGHTGGIRTVLWC-----HE----DKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQD----- 195 (334)
T ss_pred -CCCCchhhcCCCCcceeEEEe-----cc----CceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccC-----
Confidence 112456788999999999997 22 36788889999999999999999999854 568999999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEE-e
Q 000673 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL-R 716 (1358)
Q Consensus 638 ~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l-~ 716 (1358)
|++ ++.+.-++|++||..+...+..+.-. ..|.+...+|+..++++|+. |..++.||..||+.+..+ +
T Consensus 196 -G~i-lTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGge--------d~~~~kfDy~TgeEi~~~nk 264 (334)
T KOG0278|consen 196 -GRI-LTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGE--------DFKVYKFDYNTGEEIGSYNK 264 (334)
T ss_pred -CCE-EEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCc--------ceEEEEEeccCCceeeeccc
Confidence 554 56667789999999999888877643 46889999999999986544 489999999999998886 9
Q ss_pred CCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeC
Q 000673 717 GTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 717 GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~ 765 (1358)
||-+.|.++.|.++. ....+|| +|||+|+|..
T Consensus 265 gh~gpVhcVrFSPdG-E~yAsGS----------------EDGTirlWQt 296 (334)
T KOG0278|consen 265 GHFGPVHCVRFSPDG-ELYASGS----------------EDGTIRLWQT 296 (334)
T ss_pred CCCCceEEEEECCCC-ceeeccC----------------CCceEEEEEe
Confidence 999999988887632 2233343 5999999964
No 98
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.69 E-value=2.7e-16 Score=169.68 Aligned_cols=223 Identities=16% Similarity=0.224 Sum_probs=167.5
Q ss_pred CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecC-cccC-CCCCCccccCCc-eEEEEEecCCCCEEEE
Q 000673 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDL-FERH-NSPGASLKVNSH-VSRQYFLGHTGAVLCL 576 (1358)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~-~~~~-~~~~~~~d~~t~-~~~~~l~gH~~~V~~l 576 (1358)
-....+..|..++.+..|.+++.+ +++|+.|.+|+|.+... ..+. -......+.+.+ ..+++|..|.+.|++|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~l----vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l 178 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSL----VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL 178 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcE----EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence 344556789999999887777776 99999999999966430 0000 000011122222 4678899999999999
Q ss_pred EEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEE
Q 000673 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1358)
Q Consensus 577 ~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~--~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lw 654 (1358)
.||| .. .+|+||+.|++|+++|+......+.|+ ....+|.++.|+|. |++++.|..-.+++||
T Consensus 179 ~FHP-----re----~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs------GefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 179 DFHP-----RE----TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS------GEFLLVGTDHPTLRLY 243 (430)
T ss_pred eecc-----hh----heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC------CceEEEecCCCceeEE
Confidence 9994 44 899999999999999997544333332 34578999999999 9999999999999999
Q ss_pred ECCCCcEEEEe---cCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe-CCCCceEE-Eeeec
Q 000673 655 SLETLRVERMF---PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTASHSMF-DHFCK 729 (1358)
Q Consensus 655 dl~~~~~~~~l---~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~-GH~~~v~~-~~~~~ 729 (1358)
|+++.+|.... .+|...|++|.+++.+++-++++. ||.|++||--+++|++++. .|.+..++ ..|..
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk--------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK--------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCccEEEEecc--------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence 99999997654 368899999999999999986544 4999999999999999885 57655443 33332
Q ss_pred ccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 730 GISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 730 ~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
+|.+.+++.. |.+++.|.+.
T Consensus 316 ------------n~kyiLsSG~-----DS~vkLWEi~ 335 (430)
T KOG0640|consen 316 ------------NGKYILSSGK-----DSTVKLWEIS 335 (430)
T ss_pred ------------CCeEEeecCC-----cceeeeeeec
Confidence 4455555555 9999999874
No 99
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=3.5e-16 Score=176.88 Aligned_cols=204 Identities=22% Similarity=0.255 Sum_probs=154.0
Q ss_pred EEEEEEcCCcEEEEEecCcccCCCCCCcc------ccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCC
Q 000673 527 AIVYGFFSGEIEVIQFDLFERHNSPGASL------KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1358)
Q Consensus 527 ~lv~G~~dG~I~i~~~~~~~~~~~~~~~~------d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D 600 (1358)
.++.|+.|..|.||+.+......-...+. ..+.++.-..-.||++.|..|+|+ +++.++|+|||.|
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n--------~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN--------RNFRNVLASGSAD 265 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc--------cccceeEEecCCC
Confidence 39999999999998876544432211111 111111122245899999999997 6677999999999
Q ss_pred CcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000673 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP 680 (1358)
Q Consensus 601 ~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd 680 (1358)
.||++||+.+|++..++..|.+.|.++.|+|.. ...+++|+.|++|+|.|.|...+....-.-.+.|-.++|+|.
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-----p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~ 340 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE-----PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPH 340 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCC-----ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCC
Confidence 999999999999999999999999999999985 689999999999999999953222111112357899999997
Q ss_pred CCEEEEEecCCccccCCCCeEEEEECCC-CeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCc
Q 000673 681 RGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGT 759 (1358)
Q Consensus 681 ~~~L~~g~~d~sgssD~DgtV~vWd~~t-g~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~t 759 (1358)
....+..+ .| ||+||-+|+|. |+++.+++.|.+.+..+.+. ...++.+.+.+.|++
T Consensus 341 se~~f~~~------td-dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n----------------~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 341 SENSFFVS------TD-DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVN----------------IQTPGLLSTASTDKV 397 (463)
T ss_pred CceeEEEe------cC-CceEEeeecCCCCCceeEEEeccCCcceEEec----------------CCCCcceeeccccce
Confidence 76555332 23 69999999998 69999999999888665443 234555666677999
Q ss_pred EEEEeCC
Q 000673 760 FRQSQIQ 766 (1358)
Q Consensus 760 vr~W~~~ 766 (1358)
+++|++.
T Consensus 398 Vklw~~~ 404 (463)
T KOG0270|consen 398 VKLWKFD 404 (463)
T ss_pred EEEEeec
Confidence 9999864
No 100
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=3.3e-15 Score=181.17 Aligned_cols=204 Identities=13% Similarity=0.157 Sum_probs=154.9
Q ss_pred CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEe
Q 000673 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1358)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~s 579 (1358)
.+...|.||.+.|-.+-...+ .| |++++.|.++++ |.+...+|+++|. |.+.|||++|+
T Consensus 360 kP~~ef~GHt~DILDlSWSKn-~f----LLSSSMDKTVRL---------------Wh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKN-NF----LLSSSMDKTVRL---------------WHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cchhhhhccchhheecccccC-Ce----eEeccccccEEe---------------ecCCCcceeeEEe-cCCeeEEEEec
Confidence 466778999999887553222 24 899999999999 4456677888884 99999999999
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC
Q 000673 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1358)
Q Consensus 580 p~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~ 659 (1358)
| -|. ++++|||-|+.||||++...+...=... ..-|++++|.|| |+..+.|+.+|.+++|+++..
T Consensus 419 P----vDD----ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~Pd------Gk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 419 P----VDD----RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPD------GKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred c----cCC----CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccC------CceEEEEEeccEEEEEEccCC
Confidence 7 454 9999999999999999977665443333 488999999999 999999999999999999988
Q ss_pred cEEEEec---------CCCCCcEEEEEcCCCC--EEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCce--EEEe
Q 000673 660 RVERMFP---------GHPNYPAKVVWDCPRG--YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS--MFDH 726 (1358)
Q Consensus 660 ~~~~~l~---------gH~~~V~~v~~spd~~--~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v--~~~~ 726 (1358)
+....+. .|. .|+.+.|.|... .|++ ++| ..|||+|.++-.++..|+|+...- +...
T Consensus 484 k~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT-------SnD--SrIRI~d~~~~~lv~KfKG~~n~~SQ~~As 553 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVT-------SND--SRIRIYDGRDKDLVHKFKGFRNTSSQISAS 553 (712)
T ss_pred eEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEe-------cCC--CceEEEeccchhhhhhhcccccCCcceeee
Confidence 7765543 133 799999998554 5552 444 899999999999999999875322 2222
Q ss_pred eecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 727 FCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 727 ~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
|.. +|. +++..++|.-|.+|+..
T Consensus 554 fs~------------Dgk-----~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 554 FSS------------DGK-----HIVSASEDSWVYIWKND 576 (712)
T ss_pred Ecc------------CCC-----EEEEeecCceEEEEeCC
Confidence 322 122 23344469999999864
No 101
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.67 E-value=1.8e-15 Score=159.50 Aligned_cols=164 Identities=16% Similarity=0.190 Sum_probs=136.4
Q ss_pred eecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
..+.+|++.|..+.+....+. +++...|++|++ ||..++..+++|.- ...|+++.++
T Consensus 137 ~E~~ghtg~Ir~v~wc~eD~~----iLSSadd~tVRL---------------WD~rTgt~v~sL~~-~s~VtSlEvs--- 193 (334)
T KOG0278|consen 137 KEISGHTGGIRTVLWCHEDKC----ILSSADDKTVRL---------------WDHRTGTEVQSLEF-NSPVTSLEVS--- 193 (334)
T ss_pred hhhcCCCCcceeEEEeccCce----EEeeccCCceEE---------------EEeccCcEEEEEec-CCCCcceeec---
Confidence 456789999988887776665 788899999999 56778888888753 5689999998
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEE
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~ 662 (1358)
+|| . +++-..-++|++||..+...++.+... -.|.+..++|+ ...+++|+.|..+..||..++..+
T Consensus 194 --~dG----~-ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~------k~~fVaGged~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 194 --QDG----R-ILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPK------KEFFVAGGEDFKVYKFDYNTGEEI 259 (334)
T ss_pred --cCC----C-EEEEecCceeEEeccccccceeeccCc-cccccccccCC------CceEEecCcceEEEEEeccCCcee
Confidence 677 4 455566789999999999988887654 45888899998 689999999999999999999999
Q ss_pred EEe-cCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeE
Q 000673 663 RMF-PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1358)
Q Consensus 663 ~~l-~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~ 711 (1358)
..+ .||.++|.||.|+|+|..-++|+ .||+||+|.+..++.
T Consensus 260 ~~~nkgh~gpVhcVrFSPdGE~yAsGS--------EDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 260 GSYNKGHFGPVHCVRFSPDGELYASGS--------EDGTIRLWQTTPGKT 301 (334)
T ss_pred eecccCCCCceEEEEECCCCceeeccC--------CCceEEEEEecCCCc
Confidence 886 89999999999999999888433 349999999876553
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.67 E-value=9.9e-16 Score=172.23 Aligned_cols=200 Identities=19% Similarity=0.231 Sum_probs=164.4
Q ss_pred cEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCcc
Q 000673 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSF 590 (1358)
Q Consensus 511 ~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~ 590 (1358)
.++++..++...+ +.+|+.|.++.+. |.++++.+..|.||+..|+.+.|| ++.
T Consensus 221 gi~ald~~~s~~~----ilTGG~d~~av~~---------------d~~s~q~l~~~~Gh~kki~~v~~~-----~~~--- 273 (506)
T KOG0289|consen 221 GITALDIIPSSSK----ILTGGEDKTAVLF---------------DKPSNQILATLKGHTKKITSVKFH-----KDL--- 273 (506)
T ss_pred CeeEEeecCCCCc----ceecCCCCceEEE---------------ecchhhhhhhccCcceEEEEEEec-----cch---
Confidence 4566555554334 8999999888882 355677889999999999999998 555
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000673 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1358)
Q Consensus 591 ~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~ 670 (1358)
..++++|.|..|++|.............|.++|+.+..+|. |+||++++.|++..+.|+++++++.......+
T Consensus 274 -~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t------geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s 346 (506)
T KOG0289|consen 274 -DTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT------GEYLLSASNDGTWAFSDISSGSQLTVVSDETS 346 (506)
T ss_pred -hheeecCCcceEEeeccccccCccccccccccceeeeeccC------CcEEEEecCCceEEEEEccCCcEEEEEeeccc
Confidence 78999999999999999888888888999999999999999 99999999999999999999998876654322
Q ss_pred --CcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecceecCccccc
Q 000673 671 --YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVS 748 (1358)
Q Consensus 671 --~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s 748 (1358)
.+++.+|||||..+.+ |+.| +.|+|||+.++..+..|.||++.|..+.|.. +|-|.+.
T Consensus 347 ~v~~ts~~fHpDgLifgt------gt~d--~~vkiwdlks~~~~a~Fpght~~vk~i~FsE------------NGY~Lat 406 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGT------GTPD--GVVKIWDLKSQTNVAKFPGHTGPVKAISFSE------------NGYWLAT 406 (506)
T ss_pred cceeEEeeEcCCceEEec------cCCC--ceEEEEEcCCccccccCCCCCCceeEEEecc------------CceEEEE
Confidence 4689999999999984 3444 9999999999999999999999999988763 4444433
Q ss_pred CCccccccCCcEEEEeCCCcc
Q 000673 749 SLLLPIHEDGTFRQSQIQNDE 769 (1358)
Q Consensus 749 ~~l~~~~~D~tvr~W~~~~~~ 769 (1358)
. ..|+.|+.||++...
T Consensus 407 ~-----add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 407 A-----ADDGSVKLWDLRKLK 422 (506)
T ss_pred E-----ecCCeEEEEEehhhc
Confidence 2 347779999997443
No 103
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.6e-16 Score=187.77 Aligned_cols=185 Identities=21% Similarity=0.248 Sum_probs=164.2
Q ss_pred eecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
..|.+|..+|-|+.+-..... |+.|..+|+|++ ||+++.+.+++|.||...+..|.||
T Consensus 64 ~S~~~hespIeSl~f~~~E~L----laagsasgtiK~---------------wDleeAk~vrtLtgh~~~~~sv~f~--- 121 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSERL----LAAGSASGTIKV---------------WDLEEAKIVRTLTGHLLNITSVDFH--- 121 (825)
T ss_pred heeeccCCcceeeecCcchhh----hcccccCCceee---------------eehhhhhhhhhhhccccCcceeeec---
Confidence 347899999999875555554 899999999999 5577888889999999999999999
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEE
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~ 662 (1358)
|-+ .+.++||.|+.+++||++...|.+.+.+|...|.++.|+|+ |.++++++.|.++++||+..|+.+
T Consensus 122 --P~~----~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~------Gr~v~~g~ed~tvki~d~~agk~~ 189 (825)
T KOG0267|consen 122 --PYG----EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD------GRWVASGGEDNTVKIWDLTAGKLS 189 (825)
T ss_pred --cce----EEeccccccccceehhhhccCceeeecCCcceeEEEeecCC------CceeeccCCcceeeeecccccccc
Confidence 566 88899999999999999999999999999999999999999 899999999999999999999999
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeec
Q 000673 663 RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1358)
Q Consensus 663 ~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~ 729 (1358)
..|.+|...+..+.|+|..-+++. |++| ++|++||++|-+.+....+....|-+..|.+
T Consensus 190 ~ef~~~e~~v~sle~hp~e~Lla~------Gs~d--~tv~f~dletfe~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 190 KEFKSHEGKVQSLEFHPLEVLLAP------GSSD--RTVRFWDLETFEVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred cccccccccccccccCchhhhhcc------CCCC--ceeeeeccceeEEeeccCCccCCceeeeecC
Confidence 999999999999999999888874 4454 8999999999999888887777777665553
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.2e-15 Score=160.77 Aligned_cols=199 Identities=18% Similarity=0.215 Sum_probs=154.1
Q ss_pred ccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEE-eccccCCCCCccCcEEEEEeCCC
Q 000673 523 YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA-HRMVGTAKGWSFNEVLVSGSMDC 601 (1358)
Q Consensus 523 ~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~-sp~~~~~dg~~~~~~L~Sgs~D~ 601 (1358)
|...+|++++.|++|+|.......+ .+.+.+|.||+++|+.++| || .-| .+|+|++.|+
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~------------s~ll~~L~Gh~GPVwqv~wahP----k~G----~iLAScsYDg 80 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQ------------SKLLAELTGHSGPVWKVAWAHP----KFG----TILASCSYDG 80 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCC------------ceeeeEecCCCCCeeEEeeccc----ccC----cEeeEeecCc
Confidence 4445699999999999944332211 2477899999999999999 43 234 8999999999
Q ss_pred cEEEEeCCCCc--EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC---cEEEEecCCCCCcEEEE
Q 000673 602 SIRIWDLGSGN--LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL---RVERMFPGHPNYPAKVV 676 (1358)
Q Consensus 602 tI~lWDl~sg~--~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~---~~~~~l~gH~~~V~~v~ 676 (1358)
.|.||.-..|+ ..+.+..|...|++++|.|.+- |-.|++++.||.|.+.+.++. ...+....|.-.|++++
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey----gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY----GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeeccccccc----ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 99999988774 3456788999999999999843 779999999999999998754 23355678998999999
Q ss_pred EcCC---C-----------CEEEEEecCCccccCCCCeEEEEECCCC--eEEEEEeCCCCceEEEeeecccccceeecce
Q 000673 677 WDCP---R-----------GYIACLCRDHSRTSDAVDVLFIWDVKTG--ARERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1358)
Q Consensus 677 ~spd---~-----------~~L~~g~~d~sgssD~DgtV~vWd~~tg--~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~ 740 (1358)
|.|. | +.|++| +. |+.|+||+...+ .+.++|.+|++.|--+.+|+..+.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSg------Gc--Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl------- 221 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSG------GC--DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL------- 221 (299)
T ss_pred ecCcCCCccccccCcccccceeecc------CC--ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC-------
Confidence 9986 4 346633 33 489999999875 566889999999999999975532
Q ss_pred ecCcccccCCccccccCCcEEEEeCC
Q 000673 741 LNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 741 l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
.-..+.++++|+++-+|-..
T Consensus 222 ------~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 222 ------PKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ------CceeeEEecCCCcEEEEEec
Confidence 12233455679999999643
No 105
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.6e-15 Score=178.34 Aligned_cols=200 Identities=20% Similarity=0.191 Sum_probs=165.4
Q ss_pred CccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEE
Q 000673 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ 564 (1358)
Q Consensus 485 s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~ 564 (1358)
..+-+|+..... ......-+...|+++.+..++.+ |+.|..+|.|.| ||..+.+...
T Consensus 197 ~~vylW~~~s~~----v~~l~~~~~~~vtSv~ws~~G~~----LavG~~~g~v~i---------------wD~~~~k~~~ 253 (484)
T KOG0305|consen 197 QSVYLWSASSGS----VTELCSFGEELVTSVKWSPDGSH----LAVGTSDGTVQI---------------WDVKEQKKTR 253 (484)
T ss_pred ceEEEEecCCCc----eEEeEecCCCceEEEEECCCCCE----EEEeecCCeEEE---------------Eehhhccccc
Confidence 346677766543 11122223788999998888887 999999999999 4455666778
Q ss_pred EEec-CCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEE-EecCCCcEEEEEeCCCCCCCCCCCeE
Q 000673 565 YFLG-HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCF 642 (1358)
Q Consensus 565 ~l~g-H~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~-~~~H~~~V~~l~~spd~~~~~~g~~l 642 (1358)
.+.+ |..+|-|++|. + ..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++| +.++
T Consensus 254 ~~~~~h~~rvg~laW~-------~----~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d------~~~l 316 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN-------S----SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD------GNQL 316 (484)
T ss_pred cccCCcCceeEEEecc-------C----ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC------CCee
Confidence 8888 99999999996 2 7899999999999999998876655 8899999999999999 8999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcC-CCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCc
Q 000673 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASH 721 (1358)
Q Consensus 643 ~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~sp-d~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~ 721 (1358)
|||+.|+.+.|||....++...+..|...|.+++|+| ....||+|+ |+. |++|++||..+|++++.+... ++
T Consensus 317 ASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG----Gs~--D~~i~fwn~~~g~~i~~vdtg-sQ 389 (484)
T KOG0305|consen 317 ASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG----GSA--DRCIKFWNTNTGARIDSVDTG-SQ 389 (484)
T ss_pred ccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC----CCc--ccEEEEEEcCCCcEecccccC-Cc
Confidence 9999999999999988899999999999999999999 566788654 445 599999999999999887644 47
Q ss_pred eEEEeeeccc
Q 000673 722 SMFDHFCKGI 731 (1358)
Q Consensus 722 v~~~~~~~~~ 731 (1358)
|..+.|.+..
T Consensus 390 VcsL~Wsk~~ 399 (484)
T KOG0305|consen 390 VCSLIWSKKY 399 (484)
T ss_pred eeeEEEcCCC
Confidence 7777777543
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=5.7e-15 Score=168.12 Aligned_cols=222 Identities=16% Similarity=0.173 Sum_probs=173.0
Q ss_pred cCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceE
Q 000673 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1358)
Q Consensus 483 ~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~ 562 (1358)
....+++|......... +. ---.++|.++.-.+.+.| ++.|...|.|++ |.+.+|..
T Consensus 59 ~rp~l~vw~i~k~~~~~---q~-~v~Pg~v~al~s~n~G~~----l~ag~i~g~lYl---------------WelssG~L 115 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVV---QY-IVLPGPVHALASSNLGYF----LLAGTISGNLYL---------------WELSSGIL 115 (476)
T ss_pred cCccccccccCchhhhh---hh-cccccceeeeecCCCceE----EEeecccCcEEE---------------EEeccccH
Confidence 33467888876543221 11 123467888876777777 788879999999 44668999
Q ss_pred EEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCC---------CCcEEEEEecCCCcEEEEEeCCCC
Q 000673 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITVMHHHVAPVRQIILSPPQ 633 (1358)
Q Consensus 563 ~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~---------sg~~l~~~~~H~~~V~~l~~spd~ 633 (1358)
+..+.+|-..|+||.|+ -|| .+|+|||.||.|.+|++. +-++++.|..|+-+|+.+...+.+
T Consensus 116 L~v~~aHYQ~ITcL~fs-----~dg----s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 116 LNVLSAHYQSITCLKFS-----DDG----SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred HHHHHhhccceeEEEEe-----CCC----cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence 99999999999999997 777 999999999999999874 356899999999999999998764
Q ss_pred CCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC-----
Q 000673 634 TEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT----- 708 (1358)
Q Consensus 634 ~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t----- 708 (1358)
+ ...++|+|.|+++++||+..|..+.++.- ...+.+++.+|-+..+++|.. ||.|.+-++.+
T Consensus 187 ~----~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~--------~G~I~~~~~~~~~~~~ 253 (476)
T KOG0646|consen 187 T----NARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTE--------EGKIFQNLLFKLSGQS 253 (476)
T ss_pred c----cceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCC--------cceEEeeehhcCCccc
Confidence 3 46899999999999999999999887763 357899999999999996543 38888877632
Q ss_pred -----------CeEEEEEeCCCC--ceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 709 -----------GARERVLRGTAS--HSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 709 -----------g~~~~~l~GH~~--~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
++.++.+.||.. .|+++..|- + |+.++++. .||++++|+..
T Consensus 254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-------D-----gtlLlSGd-----~dg~VcvWdi~ 307 (476)
T KOG0646|consen 254 AGVNQKGRHEENTQINVLVGHENESAITCLAIST-------D-----GTLLLSGD-----EDGKVCVWDIY 307 (476)
T ss_pred ccccccccccccceeeeeccccCCcceeEEEEec-------C-----ccEEEeeC-----CCCCEEEEecc
Confidence 345678899998 887776552 2 33444444 49999999974
No 107
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=1.9e-14 Score=164.81 Aligned_cols=184 Identities=16% Similarity=0.173 Sum_probs=143.2
Q ss_pred eecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
..+..|+.+|....|.+.... .+++|+.|+.+++|+ +.+......+.||++.|.|.+|+|
T Consensus 104 R~~~ah~apv~~~~f~~~d~t---~l~s~sDd~v~k~~d---------------~s~a~v~~~l~~htDYVR~g~~~~-- 163 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNT---MLVSGSDDKVVKYWD---------------LSTAYVQAELSGHTDYVRCGDISP-- 163 (487)
T ss_pred HHHhhccCceeEEEecccCCe---EEEecCCCceEEEEE---------------cCCcEEEEEecCCcceeEeecccc--
Confidence 335667788777653332221 488888888888844 434445558999999999999996
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCC-cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC-c
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-R 660 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg-~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~-~ 660 (1358)
.++ +.++|||.||+||+||+++. ..+..+ .|..||..+.+-|. |..|++++. +.|++||+.+| +
T Consensus 164 --~~~----hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lps------gs~iasAgG-n~vkVWDl~~G~q 229 (487)
T KOG0310|consen 164 --AND----HIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPS------GSLIASAGG-NSVKVWDLTTGGQ 229 (487)
T ss_pred --CCC----eEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCC------CCEEEEcCC-CeEEEEEecCCce
Confidence 334 89999999999999999977 555666 68899999999998 889999876 57999999965 4
Q ss_pred EEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeec
Q 000673 661 VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1358)
Q Consensus 661 ~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~ 729 (1358)
.+..+..|...|+|+++..++..|++|+.| +.|+|||+.+.+.+..+. -.+.|+....++
T Consensus 230 ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD--------~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~ 289 (487)
T KOG0310|consen 230 LLTSMFNHNKTVTCLRLASDSTRLLSGSLD--------RHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP 289 (487)
T ss_pred ehhhhhcccceEEEEEeecCCceEeecccc--------cceEEEEccceEEEEeee-cccceeeEEecC
Confidence 455555598899999999999999965543 999999988888888775 456787766655
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.64 E-value=3e-15 Score=168.43 Aligned_cols=178 Identities=18% Similarity=0.163 Sum_probs=151.6
Q ss_pred CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEe
Q 000673 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1358)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~s 579 (1358)
+....|.||...|+++.+.++..- ++.++.|..|+||. .....+......|.++|+.+..|
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~----v~~aSad~~i~vws---------------~~~~s~~~~~~~h~~~V~~ls~h 312 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDT----VITASADEIIRVWS---------------VPLSSEPTSSRPHEEPVTGLSLH 312 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhh----eeecCCcceEEeec---------------cccccCccccccccccceeeeec
Confidence 666788999999999884444433 88999999999954 33333556778999999999998
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCC--CcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECC
Q 000673 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV--APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1358)
Q Consensus 580 p~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~--~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~ 657 (1358)
|.| .||+++|.|++..+.|+.+|.++......+ -.+++.+|+|| |-.|.+|..|+.|++||+.
T Consensus 313 -----~tg----eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD------gLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 313 -----PTG----EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD------GLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred -----cCC----cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC------ceEEeccCCCceEEEEEcC
Confidence 777 999999999999999999999887765432 24899999999 8999999999999999999
Q ss_pred CCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCC
Q 000673 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1358)
Q Consensus 658 ~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~ 719 (1358)
++..+..|+||.++|..|+|+.+|-||++++. |+.|++||+|.-+..+++.-..
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~ad--------d~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAAD--------DGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEec--------CCeEEEEEehhhcccceeeccc
Confidence 99999999999999999999999999997654 3789999999988888876554
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.1e-14 Score=153.73 Aligned_cols=218 Identities=14% Similarity=0.187 Sum_probs=156.7
Q ss_pred cccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCccc-----------------------------CCCCCCcc
Q 000673 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFER-----------------------------HNSPGASL 555 (1358)
Q Consensus 505 ~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~-----------------------------~~~~~~~~ 555 (1358)
|..-...|+++.|..++.+ +++.++|..+++++...-.. .+.+.+.-
T Consensus 10 f~~~~~~i~sl~fs~~G~~----litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLL----LITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccCCCceeEEEecCCCCE----EEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 4445677888776666665 77777888888865311000 01122223
Q ss_pred ccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCC
Q 000673 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE 635 (1358)
Q Consensus 556 d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~ 635 (1358)
++.+.+.++.|.||...|+.|..+ |-+ ..++|+|.|++||+||++..+|...+..-..+| ++|.|+
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~s-----P~~----d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~--- 151 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVS-----PKD----DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPE--- 151 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEec-----CCC----CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCC---
Confidence 567888999999999999999998 444 799999999999999999999888876655554 789999
Q ss_pred CCCCCeEEEEeCCCcEEEEECCCC--cEEEEecC---CCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe
Q 000673 636 HPWSDCFLSVGEDFSVALASLETL--RVERMFPG---HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1358)
Q Consensus 636 ~~~g~~l~S~s~D~tV~lwdl~~~--~~~~~l~g---H~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~ 710 (1358)
|-++|.+.....|+|||++.. .+..+|.- -....+.+.|+|||++|+.+. . .+.+++-|.-+|+
T Consensus 152 ---GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT------~--~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 152 ---GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST------N--ASFIYLLDAFDGT 220 (311)
T ss_pred ---CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe------C--CCcEEEEEccCCc
Confidence 889999988889999999864 44555542 245778999999999998532 2 3799999999999
Q ss_pred EEEEEeCCCCce-EEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 711 RERVLRGTASHS-MFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 711 ~~~~l~GH~~~v-~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
...++.+|...- +...+|- +| ++.++++++ .||++.+|+++
T Consensus 221 ~~~tfs~~~~~~~~~~~a~f--tP--------ds~Fvl~gs-----~dg~i~vw~~~ 262 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATF--TP--------DSKFVLSGS-----DDGTIHVWNLE 262 (311)
T ss_pred EeeeEeeccCCCCcceeEEE--CC--------CCcEEEEec-----CCCcEEEEEcC
Confidence 999999987443 1111221 11 123333332 48999999975
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.62 E-value=6.7e-14 Score=160.23 Aligned_cols=199 Identities=16% Similarity=0.176 Sum_probs=139.2
Q ss_pred CcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCC--CEEEEEEeccccCCCC
Q 000673 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTG--AVLCLAAHRMVGTAKG 587 (1358)
Q Consensus 510 ~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~--~V~~l~~sp~~~~~dg 587 (1358)
-.++++.+.++..+ |+.|+.||+|.+|+.-. |-+ .....+=..|.. .|+||.|+ +||
T Consensus 318 v~~tsC~~nrdg~~----iAagc~DGSIQ~W~~~~----------~~v--~p~~~vk~AH~~g~~Itsi~FS-----~dg 376 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKL----IAAGCLDGSIQIWDKGS----------RTV--RPVMKVKDAHLPGQDITSISFS-----YDG 376 (641)
T ss_pred cCceeeecCCCcch----hhhcccCCceeeeecCC----------ccc--ccceEeeeccCCCCceeEEEec-----ccc
Confidence 35666665555555 99999999999966421 111 112344467887 99999998 888
Q ss_pred CccCcEEEEEeCCCcEEEEeCCCC-cEEEEEecCC--CcEEEEEeCCCCCCCCCCCeEEEEe------CCCcEEEEECCC
Q 000673 588 WSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHV--APVRQIILSPPQTEHPWSDCFLSVG------EDFSVALASLET 658 (1358)
Q Consensus 588 ~~~~~~L~Sgs~D~tI~lWDl~sg-~~l~~~~~H~--~~V~~l~~spd~~~~~~g~~l~S~s------~D~tV~lwdl~~ 658 (1358)
++|+|-|.|.++++||++.. +++..+.+-. -+-+.++|+|+ .++|++|. .-+++.++|..+
T Consensus 377 ----~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd------~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 377 ----NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD------DKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ----chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCC------ceEEEecccccCCCCCceEEEEeccc
Confidence 99999999999999999864 5666665532 34567899999 78888875 357899999999
Q ss_pred CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEE-CC---CCeEEEEEeCCCCceEEEeeecccccc
Q 000673 659 LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD-VK---TGARERVLRGTASHSMFDHFCKGISMN 734 (1358)
Q Consensus 659 ~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd-~~---tg~~~~~l~GH~~~v~~~~~~~~~~~~ 734 (1358)
...++.+.-....|..+.|||--+.|.+| ++| |+++|+- .. .|..+.+.+.|...-...
T Consensus 447 ~d~v~ki~i~~aSvv~~~WhpkLNQi~~g------sgd--G~~~vyYdp~~S~RGak~cv~k~~rkk~~~e--------- 509 (641)
T KOG0772|consen 447 LDTVYKIDISTASVVRCLWHPKLNQIFAG------SGD--GTAHVYYDPNESIRGAKLCVVKPPRKKHIDE--------- 509 (641)
T ss_pred eeeEEEecCCCceEEEEeecchhhheeee------cCC--CceEEEECccccccchhheeecCccccchhh---------
Confidence 99998887777789999999987777754 444 8888863 32 255666665554332111
Q ss_pred eeecceecCcccccCCccccccCCcEE
Q 000673 735 SISGSVLNGNTSVSSLLLPIHEDGTFR 761 (1358)
Q Consensus 735 ~~sGs~l~g~~~~s~~l~~~~~D~tvr 761 (1358)
.+.-+...+.+.+++|++..-|
T Consensus 510 -----~~~~~~ii~phalpmfre~~~r 531 (641)
T KOG0772|consen 510 -----DLSEDVIINPHALPMFREEKSR 531 (641)
T ss_pred -----hcCcceEEccccchhccCchhh
Confidence 0111445566777888876433
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.62 E-value=8.5e-14 Score=150.98 Aligned_cols=283 Identities=16% Similarity=0.147 Sum_probs=186.0
Q ss_pred CCCCCceeEEEEEec-CCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccc
Q 000673 12 GTPPSHRVTATSALT-QPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAEN 90 (1358)
Q Consensus 12 ~~~p~h~Vtava~Sp-dg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~ 90 (1358)
+.||...|++++||| +..+++.||-||+|++|++.. .....| ....-|.+||.++++
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~--~g~~~~-ka~~~~~~PvL~v~W------------------- 80 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQN--SGQLVP-KAQQSHDGPVLDVCW------------------- 80 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEec--CCcccc-hhhhccCCCeEEEEE-------------------
Confidence 579999999999999 456677899999999999995 222333 335579999999976
Q ss_pred cCcccccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcccccccccc
Q 000673 91 SSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFES 170 (1358)
Q Consensus 91 ~~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~ 170 (1358)
+.||..+++|+.|+.+++||+.+|+... ...| ..|...+.+-....+.||....
T Consensus 81 --------sddgskVf~g~~Dk~~k~wDL~S~Q~~~-v~~H---d~pvkt~~wv~~~~~~cl~TGS-------------- 134 (347)
T KOG0647|consen 81 --------SDDGSKVFSGGCDKQAKLWDLASGQVSQ-VAAH---DAPVKTCHWVPGMNYQCLVTGS-------------- 134 (347)
T ss_pred --------ccCCceEEeeccCCceEEEEccCCCeee-eeec---ccceeEEEEecCCCcceeEecc--------------
Confidence 6788999999999999999999996543 4445 3443333333322344444443
Q ss_pred cccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccC
Q 000673 171 VEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKE 250 (1358)
Q Consensus 171 ~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~ 250 (1358)
-+.+|..||++....+.++.- .+.+.++.+..+ +++.++.++.+.+.+|.+
T Consensus 135 -----------------WDKTlKfWD~R~~~pv~t~~L----PeRvYa~Dv~~p--------m~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 135 -----------------WDKTLKFWDTRSSNPVATLQL----PERVYAADVLYP--------MAVVATAERHIAVYNLEN 185 (347)
T ss_pred -----------------cccceeecccCCCCeeeeeec----cceeeehhccCc--------eeEEEecCCcEEEEEcCC
Confidence 678999999999888887754 234777777755 888888999999999976
Q ss_pred ccc-ccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce-EEeecCCCcccceeeeeecceeeecCC
Q 000673 251 SHL-DREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC-IFRLLGSGSTIGEICFVDNLFCLEGGS 328 (1358)
Q Consensus 251 ~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~-i~d~l~~~~~~~~~~~~~~~l~~~~~~ 328 (1358)
+.. .+... + . +.-.+++|++..|.+..++++..+. -...++.+.....| +..|.....
T Consensus 186 ~~te~k~~~-----S-----p------Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF----tFkCHR~~~ 245 (347)
T KOG0647|consen 186 PPTEFKRIE-----S-----P------LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF----TFKCHRSTN 245 (347)
T ss_pred Ccchhhhhc-----C-----c------ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce----eEEEeccCC
Confidence 421 11111 1 1 1223589999999998888888776 22333554444556 345654322
Q ss_pred C--C-CceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeE
Q 000673 329 T--N-SYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHF 405 (1358)
Q Consensus 329 ~--~-~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f 405 (1358)
. + -+.+...-+ + +..+++++...||....|+-.........+.+ ...+..-.|
T Consensus 246 ~~~~~VYaVNsi~F--------------h-P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~---------~qpItcc~f 301 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAF--------------H-PVHGTLVTAGSDGTFSFWDKDARTKLKTSETH---------PQPITCCSF 301 (347)
T ss_pred CCCCceEEecceEe--------------e-cccceEEEecCCceEEEecchhhhhhhccCcC---------CCccceeEe
Confidence 1 1 111222111 1 12458999999999999998764333333333 233445566
Q ss_pred eeccceEEEe
Q 000673 406 IQMSLYLLRM 415 (1358)
Q Consensus 406 ~~~~~~L~~v 415 (1358)
..+|.+.+..
T Consensus 302 n~~G~ifaYA 311 (347)
T KOG0647|consen 302 NRNGSIFAYA 311 (347)
T ss_pred cCCCCEEEEE
Confidence 6666654443
No 112
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.62 E-value=3.7e-15 Score=165.30 Aligned_cols=169 Identities=23% Similarity=0.271 Sum_probs=132.1
Q ss_pred CceeecccCCCcEEEEEeeccCcccCC---EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEE
Q 000673 500 DGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCL 576 (1358)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~i~~~~~~p~---~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l 576 (1358)
.+.+.+.+|.+.=+++. |+|. .+++|-.-+.|++|.... +.|.+. ...|.||+..|-.|
T Consensus 202 ~Pl~t~~ghk~EGy~Ld------WSp~~~g~LlsGDc~~~I~lw~~~~--------g~W~vd----~~Pf~gH~~SVEDL 263 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLD------WSPIKTGRLLSGDCVKGIHLWEPST--------GSWKVD----QRPFTGHTKSVEDL 263 (440)
T ss_pred CceEEecccCccceeee------cccccccccccCccccceEeeeecc--------Cceeec----Cccccccccchhhh
Confidence 46778888887777765 6663 277777777888865431 235332 24567899999999
Q ss_pred EEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC---cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEE
Q 000673 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1358)
Q Consensus 577 ~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg---~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~l 653 (1358)
+|+|.. +..|+|||.|++|+|||++++ .++.+ +.|.+-|+-|.|+.. -.+|++|++||+++|
T Consensus 264 qWSptE--------~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~------~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 264 QWSPTE--------DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRR------EPLLASGGDDGTLSI 328 (440)
T ss_pred ccCCcc--------CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCC------cceeeecCCCceEEE
Confidence 999632 379999999999999999988 34443 899999999999987 458999999999999
Q ss_pred EECCC---CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 654 ASLET---LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 654 wdl~~---~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
||++. ++++..|..|..+|++|.|+|...-.+. .++.|.+|.+||+..
T Consensus 329 wDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~ia-------asg~D~QitiWDlsv 379 (440)
T KOG0302|consen 329 WDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIA-------ASGEDNQITIWDLSV 379 (440)
T ss_pred EEhhhccCCCcceeEEeccCCeeEEEeccccCceEE-------eccCCCcEEEEEeec
Confidence 99985 5788999999999999999997655442 222358999999853
No 113
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=2.8e-14 Score=155.40 Aligned_cols=193 Identities=17% Similarity=0.217 Sum_probs=147.8
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
+++++.+.+|+++|.......+ .+..|.+.|+++.|......+ -|++|++||.|.+| +.
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg----~ll~HagsitaL~F~~~~S~s--hLlS~sdDG~i~iw---------------~~ 114 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLG----ILLSHAGSITALKFYPPLSKS--HLLSGSDDGHIIIW---------------RV 114 (362)
T ss_pred EeccCCCCcEEEEeccchhhhc----ceeccccceEEEEecCCcchh--heeeecCCCcEEEE---------------Ec
Confidence 4556677889999987765543 346689999998865544311 29999999999994 45
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCC--
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTE-- 635 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~-- 635 (1358)
...+++..+++|++.|+.|+.| |.| ++-+|-+.|+++++||+-.|+.-..+..- ..-+.+.|+|.+..
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiH-----PS~----KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIH-----PSG----KLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFV 184 (362)
T ss_pred CCeEEeeeecccccccceeEec-----CCC----ceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEE
Confidence 5667899999999999999999 667 89999999999999999988754333221 11222455554321
Q ss_pred -------------------------------CCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE--cCCCC
Q 000673 636 -------------------------------HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW--DCPRG 682 (1358)
Q Consensus 636 -------------------------------~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~--spd~~ 682 (1358)
.-.+..+++|++|+.|++||..+..+...|.+|..+|..+.+ +|++.
T Consensus 185 v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 185 VSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred EEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence 023578999999999999999999999999999999998885 67788
Q ss_pred EEEEEecCCccccCCCCeEEEEECCCC
Q 000673 683 YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 683 ~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
||+++ ++ ||.|+|||++..
T Consensus 265 ~lvTa------SS--DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 265 YLVTA------SS--DGFIKVWDIDME 283 (362)
T ss_pred EEEEe------cc--CceEEEEEcccc
Confidence 88853 34 499999999876
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.2e-14 Score=165.55 Aligned_cols=209 Identities=16% Similarity=0.163 Sum_probs=171.7
Q ss_pred cCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceE
Q 000673 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1358)
Q Consensus 483 ~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~ 562 (1358)
....+.+|.+... .+...+..|-+.||++.|..++.+ +++|+.||.|.+|........+. -.+-++
T Consensus 101 i~g~lYlWelssG----~LL~v~~aHYQ~ITcL~fs~dgs~----iiTgskDg~V~vW~l~~lv~a~~------~~~~~p 166 (476)
T KOG0646|consen 101 ISGNLYLWELSSG----ILLNVLSAHYQSITCLKFSDDGSH----IITGSKDGAVLVWLLTDLVSADN------DHSVKP 166 (476)
T ss_pred ccCcEEEEEeccc----cHHHHHHhhccceeEEEEeCCCcE----EEecCCCccEEEEEEEeeccccc------CCCccc
Confidence 5567788988654 566777899999999999999988 99999999999987643332211 124568
Q ss_pred EEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeE
Q 000673 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1358)
Q Consensus 563 ~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l 642 (1358)
.+.|.+|+-+|+++...+ .| -+.+++|+|.|.++|+||+..|.++.++. ...++.++++.|. +..+
T Consensus 167 ~~~f~~HtlsITDl~ig~-----Gg--~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpa------e~~~ 232 (476)
T KOG0646|consen 167 LHIFSDHTLSITDLQIGS-----GG--TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPA------ERVV 232 (476)
T ss_pred eeeeccCcceeEEEEecC-----CC--ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEccc------ccEE
Confidence 999999999999999862 22 34699999999999999999999998875 3567999999998 7899
Q ss_pred EEEeCCCcEEEEECCCC----------------cEEEEecCCCC--CcEEEEEcCCCCEEEEEecCCccccCCCCeEEEE
Q 000673 643 LSVGEDFSVALASLETL----------------RVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1358)
Q Consensus 643 ~S~s~D~tV~lwdl~~~----------------~~~~~l~gH~~--~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vW 704 (1358)
..|+.||.|.+.++... ..+..+.||.+ .|+|++.+-||..|+ ++|.||.|.||
T Consensus 233 yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl--------SGd~dg~VcvW 304 (476)
T KOG0646|consen 233 YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL--------SGDEDGKVCVW 304 (476)
T ss_pred EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE--------eeCCCCCEEEE
Confidence 99999999999887532 34677889988 999999999999999 44556999999
Q ss_pred ECCCCeEEEEEeCCCCceEEEee
Q 000673 705 DVKTGARERVLRGTASHSMFDHF 727 (1358)
Q Consensus 705 d~~tg~~~~~l~GH~~~v~~~~~ 727 (1358)
|+.+.+++|++..-.+.|+.+++
T Consensus 305 di~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 305 DIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred ecchHHHHHHHhhhccccceeEe
Confidence 99999999998866777877644
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.60 E-value=1.6e-13 Score=157.14 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=144.7
Q ss_pred ccCCCcEEEEEeeccCcccCC---EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEE-----ecCCCCEEEEE
Q 000673 506 VHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-----LGHTGAVLCLA 577 (1358)
Q Consensus 506 ~~h~~~Vts~~~i~~~~~~p~---~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l-----~gH~~~V~~l~ 577 (1358)
+||...+++ .+|+|. .+++.+.||++++|+.+.... ..+++ .|..-.|+..+
T Consensus 265 KGHia~lt~------g~whP~~k~~FlT~s~DgtlRiWdv~~~k~--------------q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 265 KGHIAELTC------GCWHPDNKEEFLTCSYDGTLRIWDVNNTKS--------------QLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred CCceeeeec------cccccCcccceEEecCCCcEEEEecCCchh--------------heeEEeeccCCCcccCceeee
Confidence 678888888 458886 388889999999977653211 22232 24455788999
Q ss_pred EeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCc---EEEEEecCCC--cEEEEEeCCCCCCCCCCCeEEEEeCCCcEE
Q 000673 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVA--PVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1358)
Q Consensus 578 ~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~---~l~~~~~H~~--~V~~l~~spd~~~~~~g~~l~S~s~D~tV~ 652 (1358)
|+ +|| ++++.|..||+|.+||..... ..+.-..|.. .|+||.|++| |++|+|-+.|.+++
T Consensus 325 ~n-----rdg----~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d------g~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 325 WN-----RDG----KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD------GNYLLSRGFDDTLK 389 (641)
T ss_pred cC-----CCc----chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc------cchhhhccCCCcee
Confidence 98 888 999999999999999975432 1233346776 8999999999 99999999999999
Q ss_pred EEECCCC-cEEEEecCCCC--CcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeec
Q 000673 653 LASLETL-RVERMFPGHPN--YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1358)
Q Consensus 653 lwdl~~~-~~~~~l~gH~~--~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~ 729 (1358)
+||++.. +++....+-.. .-+.++|+|+.++|++|..-.-+.. -++++++|..|-+.+..+.=..+.|..+.|.+
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~--~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT--AGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCC--CceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 9999864 56766665433 3468999999999998764322233 37899999999999988877788888777776
Q ss_pred ccc
Q 000673 730 GIS 732 (1358)
Q Consensus 730 ~~~ 732 (1358)
.+.
T Consensus 468 kLN 470 (641)
T KOG0772|consen 468 KLN 470 (641)
T ss_pred hhh
Confidence 543
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.8e-14 Score=149.53 Aligned_cols=179 Identities=17% Similarity=0.254 Sum_probs=131.6
Q ss_pred ecccCCCcEEEEEeeccCcccCC----EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEe
Q 000673 504 DFVHKEKIVSSSMVISESFYAPY----AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~----~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~s 579 (1358)
.+..|...|+++. |.|. .|+||+.||.|.|..++..+. |+ ..+....|.-.|+++.|.
T Consensus 97 e~~~h~~SVNsV~------wapheygl~LacasSDG~vsvl~~~~~g~-------w~-----t~ki~~aH~~GvnsVswa 158 (299)
T KOG1332|consen 97 EHAAHSASVNSVA------WAPHEYGLLLACASSDGKVSVLTYDSSGG-------WT-----TSKIVFAHEIGVNSVSWA 158 (299)
T ss_pred hhhhhcccceeec------ccccccceEEEEeeCCCcEEEEEEcCCCC-------cc-----chhhhhccccccceeeec
Confidence 3467888999976 6665 499999999999988874422 32 234567899999999999
Q ss_pred ccccCCC------CCccCcEEEEEeCCCcEEEEeCCCCc--EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcE
Q 000673 580 RMVGTAK------GWSFNEVLVSGSMDCSIRIWDLGSGN--LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1358)
Q Consensus 580 p~~~~~d------g~~~~~~L~Sgs~D~tI~lWDl~sg~--~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV 651 (1358)
|... |. .....+.|+||+.|..|+||+...++ .-++|.+|++.|+.++|.|..... -.+++|++.||+|
T Consensus 159 pa~~-~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~--~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 159 PASA-PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP--KSTIASCSQDGTV 235 (299)
T ss_pred CcCC-CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC--ceeeEEecCCCcE
Confidence 8643 21 01112579999999999999998763 456699999999999999984221 3589999999999
Q ss_pred EEEECCCC-cE--EEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC-CeE
Q 000673 652 ALASLETL-RV--ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GAR 711 (1358)
Q Consensus 652 ~lwdl~~~-~~--~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t-g~~ 711 (1358)
.||..+.- +. ...+......++.+.|++.|++|++++. |+.|++|.-.. |+-
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G--------dNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG--------DNKVTLWKENVDGKW 291 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC--------CcEEEEEEeCCCCcE
Confidence 99986621 11 1122223457899999999999997543 48999997543 443
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=3.2e-13 Score=147.39 Aligned_cols=78 Identities=17% Similarity=0.346 Sum_probs=67.3
Q ss_pred CCCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCccccccccccc
Q 000673 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1358)
Q Consensus 12 ~~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~ 91 (1358)
+.||...|+.+.|+|....|..++-||+++++|+.. . .+....-|.+|+.+++|...
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~-----~-~l~~~~~~~~plL~c~F~d~----------------- 65 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPA-----N-SLKLKFKHGAPLLDCAFADE----------------- 65 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccc-----h-hhhhheecCCceeeeeccCC-----------------
Confidence 468999999999999999999999999999999995 2 33445579999999988554
Q ss_pred CcccccccCCCCeEEEeeCCCeEEEEECCCCc
Q 000673 92 SNVMGKSSLDNGALISACTDGVLCVWSRSSGH 123 (1358)
Q Consensus 92 ~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~ 123 (1358)
...++|+.||+|++.|+.+|.
T Consensus 66 -----------~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 66 -----------STIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred -----------ceEEEeccCceEEEEEecCCc
Confidence 779999999999999998775
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.60 E-value=8e-15 Score=161.85 Aligned_cols=240 Identities=15% Similarity=0.121 Sum_probs=182.0
Q ss_pred cccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCc--c--------
Q 000673 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLF--E-------- 546 (1358)
Q Consensus 477 ~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~--~-------- 546 (1358)
.+++.+.++.+++|+.... .+...|..|.+.|..+.+.. . .+++.+.|.+|+.|..+.. .
T Consensus 81 ~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~-~-----~~~tvgdDKtvK~wk~~~~p~~tilg~s~~ 150 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ-T-----SFFTVGDDKTVKQWKIDGPPLHTILGKSVY 150 (433)
T ss_pred hhhccccCceEEEEehhhh----hhhheeecccCceeeEEecc-c-----ceEEecCCcceeeeeccCCcceeeeccccc
Confidence 4667788999999999765 46677889999999876444 2 2677789999999873210 0
Q ss_pred -------c--CCCC----CCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcE
Q 000673 547 -------R--HNSP----GASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL 613 (1358)
Q Consensus 547 -------~--~~~~----~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~ 613 (1358)
. ..++ ...||..-..|++.+.=-.+.|.++.|+| -. ..+|++|+.|++|.++|++++++
T Consensus 151 ~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNp-----vE---TsILas~~sDrsIvLyD~R~~~P 222 (433)
T KOG0268|consen 151 LGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNP-----VE---TSILASCASDRSIVLYDLRQASP 222 (433)
T ss_pred cccccccccccccccCceeeecccccCCccceeecCCCceeEEecCC-----Cc---chheeeeccCCceEEEecccCCc
Confidence 0 0112 23677776778888877788999999985 22 37999999999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCc
Q 000673 614 ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHS 692 (1358)
Q Consensus 614 l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~-~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~s 692 (1358)
++.... +..-+.|+|+|+ +..|++++.|..+..+|++.. +++..+.+|.+.|..|.|+|.|+-+++|+.
T Consensus 223 l~KVi~-~mRTN~IswnPe------afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy--- 292 (433)
T KOG0268|consen 223 LKKVIL-TMRTNTICWNPE------AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY--- 292 (433)
T ss_pred cceeee-eccccceecCcc------ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc---
Confidence 887643 345678999997 789999999999999999874 578889999999999999999999996544
Q ss_pred cccCCCCeEEEEECCCCeEEEEEeCCC-CceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 693 RTSDAVDVLFIWDVKTGARERVLRGTA-SHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 693 gssD~DgtV~vWd~~tg~~~~~l~GH~-~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
| .+|||+..+.|+.-.++..-. ..|+++.|+. .+..+++|| .|+.+|+|..+
T Consensus 293 ---D--ksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGS----------------dd~nvRlWka~ 345 (433)
T KOG0268|consen 293 ---D--KSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGS----------------DDGNVRLWKAK 345 (433)
T ss_pred ---c--ceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecC----------------CCcceeeeecc
Confidence 3 899999999887655543322 4565554442 223355555 48999999765
No 119
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.9e-13 Score=141.97 Aligned_cols=211 Identities=18% Similarity=0.169 Sum_probs=162.7
Q ss_pred cccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccC
Q 000673 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1358)
Q Consensus 505 ~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~ 584 (1358)
-+.|.+.|+|.+..++... +++|+.|..|++..|+.... -.+| ....|.-|.+.|..++|-.
T Consensus 85 ~khhkgsiyc~~ws~~gel----iatgsndk~ik~l~fn~dt~---------~~~g-~dle~nmhdgtirdl~fld---- 146 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGEL----IATGSNDKTIKVLPFNADTC---------NATG-HDLEFNMHDGTIRDLAFLD---- 146 (350)
T ss_pred ccccCccEEEEEecCccCe----EEecCCCceEEEEecccccc---------cccC-cceeeeecCCceeeeEEec----
Confidence 3678899999884444444 99999999999998873321 1122 2346778999999999952
Q ss_pred CCCCccCcEEEEEe-CCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEE
Q 000673 585 AKGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1358)
Q Consensus 585 ~dg~~~~~~L~Sgs-~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~ 663 (1358)
|......+|+|++ .|+.|.+=|...|+.++.+.+|++-|.++- +-+ |-.|++|+.|.+|++||++-..|+.
T Consensus 147 -~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn------~~m~~sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 147 -DPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWN------GAMFASGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred -CCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Eec------CcEEEccCCCceEEEEeeeccceee
Confidence 1112347888876 588999999999999999999999998874 223 6799999999999999999999988
Q ss_pred EecC--C-----CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeeccccccee
Q 000673 664 MFPG--H-----PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 736 (1358)
Q Consensus 664 ~l~g--H-----~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~ 736 (1358)
++.. | .+.|.+|+..|.|++|++|..| .+..+||++.|..++.+..|++.+-++.|++..
T Consensus 219 ~l~~~~~~~glessavaav~vdpsgrll~sg~~d--------ssc~lydirg~r~iq~f~phsadir~vrfsp~a----- 285 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD--------SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA----- 285 (350)
T ss_pred eccCcccCCCcccceeEEEEECCCcceeeeccCC--------CceEEEEeeCCceeeeeCCCccceeEEEeCCCc-----
Confidence 7642 2 2468899999999999965443 788899999999999999999999988887532
Q ss_pred ecceecCcccccCCccccccCCcEEEEeCC
Q 000673 737 SGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 737 sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
.+.+..+. |.++|+=++.
T Consensus 286 -------~yllt~sy-----d~~ikltdlq 303 (350)
T KOG0641|consen 286 -------HYLLTCSY-----DMKIKLTDLQ 303 (350)
T ss_pred -------eEEEEecc-----cceEEEeecc
Confidence 22333333 8999988764
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.59 E-value=4.9e-14 Score=151.74 Aligned_cols=236 Identities=19% Similarity=0.207 Sum_probs=161.6
Q ss_pred ccCCCcEEEEEee-ccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccC
Q 000673 506 VHKEKIVSSSMVI-SESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1358)
Q Consensus 506 ~~h~~~Vts~~~i-~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~ 584 (1358)
..|++.|.++.+- ....| +++|+.||.|.+++.....+..+++-.-+..--.-...-.+|+..|..+.|.|
T Consensus 40 r~HgGsvNsL~id~tegry----mlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP---- 111 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRY----MLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP---- 111 (397)
T ss_pred ccCCCccceeeeccccceE----EeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee----
Confidence 5688999987653 23455 99999999999987765443222221111110001122357999999999986
Q ss_pred CCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEE
Q 000673 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1358)
Q Consensus 585 ~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~ 664 (1358)
-|- -.+.|+|-|.++++||..+-+....|+- .+.|.+-+++|-... -.++|+|..|-.|+|.|+.+|.+-++
T Consensus 112 ~Dt----GmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~s---HcLiA~gtr~~~VrLCDi~SGs~sH~ 183 (397)
T KOG4283|consen 112 IDT----GMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMS---HCLIAAGTRDVQVRLCDIASGSFSHT 183 (397)
T ss_pred ecC----ceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhc---ceEEEEecCCCcEEEEeccCCcceee
Confidence 333 6999999999999999999888777753 567888899987331 13567778899999999999999999
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC-eEEEEEeCCCCceEEEeeecccccceeecceecC
Q 000673 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDHFCKGISMNSISGSVLNG 743 (1358)
Q Consensus 665 l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg-~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g 743 (1358)
+.||.+.|.+|.|+|...+++. +|++ ||.||+||++.. -+.+++.-|...-.-..-. .....|.+ +|
T Consensus 184 LsGHr~~vlaV~Wsp~~e~vLa-----tgsa--Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~----n~ah~gkv-ng 251 (397)
T KOG4283|consen 184 LSGHRDGVLAVEWSPSSEWVLA-----TGSA--DGAIRLWDIRRASGCFRVLDQHNTKRPPILKT----NTAHYGKV-NG 251 (397)
T ss_pred eccccCceEEEEeccCceeEEE-----ecCC--CceEEEEEeecccceeEEeecccCccCccccc----ccccccee-ee
Confidence 9999999999999999998873 2344 599999999875 6788887776211000000 00011110 11
Q ss_pred --cccccCCccccccCCcEEEEeCCCcc
Q 000673 744 --NTSVSSLLLPIHEDGTFRQSQIQNDE 769 (1358)
Q Consensus 744 --~~~~s~~l~~~~~D~tvr~W~~~~~~ 769 (1358)
..+....+..+..|.++|.|+..+.+
T Consensus 252 la~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 252 LAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eeecccchhhhhccCccceEEeecccCc
Confidence 11223345566779999999865443
No 121
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.59 E-value=2.6e-14 Score=158.64 Aligned_cols=200 Identities=18% Similarity=0.194 Sum_probs=155.3
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCcc-ccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASL-KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~-d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lW 606 (1358)
.++-++.|.|.||+...........+.- .....+++.++.||.+.=.+|.|+|. .. ..|+||..-+.|++|
T Consensus 168 ~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~---~~-----g~LlsGDc~~~I~lw 239 (440)
T KOG0302|consen 168 CASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI---KT-----GRLLSGDCVKGIHLW 239 (440)
T ss_pred eeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc---cc-----cccccCccccceEee
Confidence 5566788999998764433332211111 11345688999999999999999962 22 368999999999999
Q ss_pred eCCCCcEE---EEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC---cEEEEecCCCCCcEEEEEcCC
Q 000673 607 DLGSGNLI---TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL---RVERMFPGHPNYPAKVVWDCP 680 (1358)
Q Consensus 607 Dl~sg~~l---~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~---~~~~~l~gH~~~V~~v~~spd 680 (1358)
...+|.-. ..|.+|+..|..|.|+|.. ...|+|||.|++|+|||+|.+ .++.. ..|.+.|+.|.|+..
T Consensus 240 ~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE-----~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~ 313 (440)
T KOG0302|consen 240 EPSTGSWKVDQRPFTGHTKSVEDLQWSPTE-----DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRR 313 (440)
T ss_pred eeccCceeecCccccccccchhhhccCCcc-----CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCC
Confidence 99887643 4578899999999999984 579999999999999999988 44444 889999999999999
Q ss_pred CCEEEEEecCCccccCCCCeEEEEECCC---CeEEEEEeCCCCceEEEeeeccccc-ceeecceecCcccccCCcccccc
Q 000673 681 RGYIACLCRDHSRTSDAVDVLFIWDVKT---GARERVLRGTASHSMFDHFCKGISM-NSISGSVLNGNTSVSSLLLPIHE 756 (1358)
Q Consensus 681 ~~~L~~g~~d~sgssD~DgtV~vWd~~t---g~~~~~l~GH~~~v~~~~~~~~~~~-~~~sGs~l~g~~~~s~~l~~~~~ 756 (1358)
..+|++ ++.||+++|||+|+ ++.+.+|+-|.+.++++.|.+.... ..++| .
T Consensus 314 ~~lLas--------G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-----------------~ 368 (440)
T KOG0302|consen 314 EPLLAS--------GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-----------------E 368 (440)
T ss_pred cceeee--------cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-----------------C
Confidence 888874 23369999999986 7889999999999999988864322 22333 4
Q ss_pred CCcEEEEeCC
Q 000673 757 DGTFRQSQIQ 766 (1358)
Q Consensus 757 D~tvr~W~~~ 766 (1358)
|.++-+||+.
T Consensus 369 D~QitiWDls 378 (440)
T KOG0302|consen 369 DNQITIWDLS 378 (440)
T ss_pred CCcEEEEEee
Confidence 9999999974
No 122
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.59 E-value=2.3e-14 Score=162.92 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=142.7
Q ss_pred ccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCC
Q 000673 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1358)
Q Consensus 506 ~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~ 585 (1358)
..|...+.++++.+++.| +++|..|..|.| |+..+++.++.+.||.+.|.+++|-
T Consensus 199 ~~h~keil~~avS~Dgky----latgg~d~~v~I---------------w~~~t~ehv~~~~ghr~~V~~L~fr------ 253 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKY----LATGGRDRHVQI---------------WDCDTLEHVKVFKGHRGAVSSLAFR------ 253 (479)
T ss_pred ccccceeEEEEEcCCCcE----EEecCCCceEEE---------------ecCcccchhhcccccccceeeeeee------
Confidence 378899999999999999 999999999999 4566888899999999999999993
Q ss_pred CCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEe
Q 000673 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1358)
Q Consensus 586 dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l 665 (1358)
...+.|.|+|.|++|++|+++....+.++.||.+.|.+|..... ++++..|+.|+++++|++. -+....|
T Consensus 254 ---~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r------eR~vtVGgrDrT~rlwKi~-eesqlif 323 (479)
T KOG0299|consen 254 ---KGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR------ERCVTVGGRDRTVRLWKIP-EESQLIF 323 (479)
T ss_pred ---cCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc------cceEEeccccceeEEEecc-ccceeee
Confidence 33478999999999999999999999999999999999988766 5777777799999999994 4455678
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 666 PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 666 ~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
.+|.+.+-|++|-.+..|+. |+. ||.|.+|++-+.+.+.+..
T Consensus 324 rg~~~sidcv~~In~~Hfvs-------GSd--nG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 324 RGGEGSIDCVAFINDEHFVS-------GSD--NGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred eCCCCCeeeEEEecccceee-------ccC--CceEEEeeecccCceeEee
Confidence 89999999999987766654 344 4999999998888776654
No 123
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.58 E-value=4e-14 Score=150.72 Aligned_cols=185 Identities=19% Similarity=0.245 Sum_probs=150.6
Q ss_pred ecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEecccc
Q 000673 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~ 583 (1358)
.+.+|-+.|-++....++.. +++|+.|+++.+|..+... ......++||++.|-.++|+|.+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~----lasgs~dktv~v~n~e~~r-------------~~~~~~~~gh~~svdql~w~~~~- 76 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTK----LASGSFDKTVSVWNLERDR-------------FRKELVYRGHTDSVDQLCWDPKH- 76 (313)
T ss_pred HhhhhhhcceEEEEcccCce----eeecccCCceEEEEecchh-------------hhhhhcccCCCcchhhheeCCCC-
Confidence 45678888999888888877 9999999999997765321 11223467999999999999733
Q ss_pred CCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC----
Q 000673 584 TAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL---- 659 (1358)
Q Consensus 584 ~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~---- 659 (1358)
. ..+++++.|++|++||++++++........+.+ -+.|+|+ |++++.++.|..|...|.++.
T Consensus 77 ---~----d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~------g~~~~~~~kdD~it~id~r~~~~~~ 142 (313)
T KOG1407|consen 77 ---P----DLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPD------GEYIAVGNKDDRITFIDARTYKIVN 142 (313)
T ss_pred ---C----cceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCC------CCEEEEecCcccEEEEEecccceee
Confidence 2 789999999999999999999999887655544 5678998 888999998888888887653
Q ss_pred -------------------------------------cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEE
Q 000673 660 -------------------------------------RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1358)
Q Consensus 660 -------------------------------------~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~ 702 (1358)
++++.+..|.....||.|+|+|+|+++| ++| ..+.
T Consensus 143 ~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G------sAD--AlvS 214 (313)
T KOG1407|consen 143 EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG------SAD--ALVS 214 (313)
T ss_pred hhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeec------ccc--ceee
Confidence 5566677898888999999999999975 444 7999
Q ss_pred EEECCCCeEEEEEeCCCCceEEEeee
Q 000673 703 IWDVKTGARERVLRGTASHSMFDHFC 728 (1358)
Q Consensus 703 vWd~~tg~~~~~l~GH~~~v~~~~~~ 728 (1358)
+||++.--|+|.+..|.=.|-.+.|+
T Consensus 215 LWD~~ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 215 LWDVDELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred ccChhHhhhheeeccccCceEEEEec
Confidence 99999999999999998888777665
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.58 E-value=9.4e-15 Score=161.31 Aligned_cols=201 Identities=16% Similarity=0.253 Sum_probs=155.5
Q ss_pred ecccCCCcEEEEEeeccCcccCC---EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEec
Q 000673 504 DFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~---~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp 580 (1358)
.+.||...|.+++ .+|. .+++|+.||.|++ ||+.+..+...|..|.|.|..|.+..
T Consensus 61 ~L~gHrdGV~~la------khp~~ls~~aSGs~DG~Vki---------------WnlsqR~~~~~f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 61 SLDGHRDGVSCLA------KHPNKLSTVASGSCDGEVKI---------------WNLSQRECIRTFKAHEGLVRGICVTQ 119 (433)
T ss_pred hccccccccchhh------cCcchhhhhhccccCceEEE---------------EehhhhhhhheeecccCceeeEEecc
Confidence 3478999999965 4554 5899999999999 44667778999999999999999861
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEeCCC---------------------------C-----------cEEEEEecCCC
Q 000673 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGS---------------------------G-----------NLITVMHHHVA 622 (1358)
Q Consensus 581 ~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~s---------------------------g-----------~~l~~~~~H~~ 622 (1358)
..++|+++|++|+.|-++- | .++.+|.--.+
T Consensus 120 -----------~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D 188 (433)
T KOG0268|consen 120 -----------TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD 188 (433)
T ss_pred -----------cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC
Confidence 5789999999999997431 1 12333444456
Q ss_pred cEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEE
Q 000673 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1358)
Q Consensus 623 ~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~ 702 (1358)
.|.++.|+|.+ ...|++++.|++|.|||++.+.+++...-- ..-+.|+|+|+.-.++ .+++|..+|
T Consensus 189 ti~svkfNpvE-----TsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~--------~a~ED~nlY 254 (433)
T KOG0268|consen 189 SISSVKFNPVE-----TSILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFV--------AANEDHNLY 254 (433)
T ss_pred ceeEEecCCCc-----chheeeeccCCceEEEecccCCccceeeee-ccccceecCcccccee--------eccccccce
Confidence 67888898874 368889999999999999999988766432 3567899999554444 455579999
Q ss_pred EEECCC-CeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCC
Q 000673 703 IWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1358)
Q Consensus 703 vWd~~t-g~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~ 767 (1358)
.+|++. .+.+.+..||.+.|+.+.|++ .|...++++. |.+||+...+.
T Consensus 255 ~~DmR~l~~p~~v~~dhvsAV~dVdfsp------------tG~Efvsgsy-----DksIRIf~~~~ 303 (433)
T KOG0268|consen 255 TYDMRNLSRPLNVHKDHVSAVMDVDFSP------------TGQEFVSGSY-----DKSIRIFPVNH 303 (433)
T ss_pred ehhhhhhcccchhhcccceeEEEeccCC------------Ccchhccccc-----cceEEEeecCC
Confidence 999987 577899999999999998875 2344555666 99999997653
No 125
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-12 Score=144.11 Aligned_cols=259 Identities=17% Similarity=0.180 Sum_probs=187.1
Q ss_pred CCCceeEeEeeccceEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccce----eeeccccccCCCC
Q 000673 397 SGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVD----WVNNSTFLDENEG 472 (1358)
Q Consensus 397 ~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~----w~~~~~~~~~~~g 472 (1358)
...+.++.|+.+|+++++.. .+.. +++|+.. .+++.+.+..-. .|. +.-.... -
T Consensus 14 ~~~i~sl~fs~~G~~litss-----~dDs------l~LYd~~-----~g~~~~ti~skk-yG~~~~~Fth~~~~-----~ 71 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSS-----EDDS------LRLYDSL-----SGKQVKTINSKK-YGVDLACFTHHSNT-----V 71 (311)
T ss_pred CCceeEEEecCCCCEEEEec-----CCCe------EEEEEcC-----CCceeeEeeccc-ccccEEEEecCCce-----E
Confidence 34567889999999888754 3344 7888621 234555554432 122 1111100 0
Q ss_pred cccccccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCC
Q 000673 473 SCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPG 552 (1358)
Q Consensus 473 ~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~ 552 (1358)
...++..+.++++.++.++ .-...|.||...|+++...+-+. ..++++.|++|++|+
T Consensus 72 ----i~sStk~d~tIryLsl~dN----kylRYF~GH~~~V~sL~~sP~~d----~FlS~S~D~tvrLWD----------- 128 (311)
T KOG1446|consen 72 ----IHSSTKEDDTIRYLSLHDN----KYLRYFPGHKKRVNSLSVSPKDD----TFLSSSLDKTVRLWD----------- 128 (311)
T ss_pred ----EEccCCCCCceEEEEeecC----ceEEEcCCCCceEEEEEecCCCC----eEEecccCCeEEeeE-----------
Confidence 1233445678999998877 56788999999999987665554 389999999999944
Q ss_pred CccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC--cEEEEEecC---CCcEEEE
Q 000673 553 ASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITVMHHH---VAPVRQI 627 (1358)
Q Consensus 553 ~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg--~~l~~~~~H---~~~V~~l 627 (1358)
++..+|...+.-- .-...+|. |.| -++|.|.....|+++|++.- .+..+|.-. ....+.+
T Consensus 129 ----lR~~~cqg~l~~~--~~pi~AfD-----p~G----LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l 193 (311)
T KOG1446|consen 129 ----LRVKKCQGLLNLS--GRPIAAFD-----PEG----LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDL 193 (311)
T ss_pred ----ecCCCCceEEecC--CCcceeEC-----CCC----cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeee
Confidence 4444555555322 22345675 778 88888888889999999853 345555443 5678999
Q ss_pred EeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCc---EEEEEcCCCCEEEEEecCCccccCCCCeEEEE
Q 000673 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYP---AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1358)
Q Consensus 628 ~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V---~~v~~spd~~~L~~g~~d~sgssD~DgtV~vW 704 (1358)
.|+|| |++++-....+.+.+.|.-+|....++.++.+.- ....|.||++++++|. + ||+|.+|
T Consensus 194 ~FS~d------GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs-------~-dg~i~vw 259 (311)
T KOG1446|consen 194 EFSPD------GKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS-------D-DGTIHVW 259 (311)
T ss_pred EEcCC------CCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec-------C-CCcEEEE
Confidence 99999 9999999999999999999999999998886432 5889999999999432 2 5999999
Q ss_pred ECCCCeEEEEEeC-CCCceEEEeeec
Q 000673 705 DVKTGARERVLRG-TASHSMFDHFCK 729 (1358)
Q Consensus 705 d~~tg~~~~~l~G-H~~~v~~~~~~~ 729 (1358)
++++|+.+..++| +...+.++.|.+
T Consensus 260 ~~~tg~~v~~~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 260 NLETGKKVAVLRGPNGGPVSCVRFNP 285 (311)
T ss_pred EcCCCcEeeEecCCCCCCccccccCC
Confidence 9999999999999 677776666654
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.7e-11 Score=142.63 Aligned_cols=443 Identities=15% Similarity=0.094 Sum_probs=247.0
Q ss_pred CCCCeEEEeeCCCeEEEEECCCCceEEE-eeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcccccccccccccccccc
Q 000673 100 LDNGALISACTDGVLCVWSRSSGHCRRR-RKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSE 178 (1358)
Q Consensus 100 ~d~~~L~S~s~Dg~l~lWdl~~G~c~~~-~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~~~s~ 178 (1358)
.+.+.||.+=.||.|.+|++..+-|... ...| ....|-.+.-. ....|+..+
T Consensus 35 ~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~----~drsIE~L~W~-e~~RLFS~g---------------------- 87 (691)
T KOG2048|consen 35 HKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP----EDRSIESLAWA-EGGRLFSSG---------------------- 87 (691)
T ss_pred ccCCceeeeccCCcEEEEccCCCceeeEEEecC----CCCceeeEEEc-cCCeEEeec----------------------
Confidence 3446699999999999999997655443 3332 22222222211 112344444
Q ss_pred cccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCcccccccC
Q 000673 179 DKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEG 258 (1358)
Q Consensus 179 d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~~~~~~ 258 (1358)
-.+.|.-||+.+++..+.+.. .-++|.+|++... ++.++.++.||++...+....
T Consensus 88 ---------~sg~i~EwDl~~lk~~~~~d~---~gg~IWsiai~p~------~~~l~IgcddGvl~~~s~~p~------- 142 (691)
T KOG2048|consen 88 ---------LSGSITEWDLHTLKQKYNIDS---NGGAIWSIAINPE------NTILAIGCDDGVLYDFSIGPD------- 142 (691)
T ss_pred ---------CCceEEEEecccCceeEEecC---CCcceeEEEeCCc------cceEEeecCCceEEEEecCCc-------
Confidence 568999999999999999988 7788999999854 568888999997776666552
Q ss_pred CcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce--EEeecCCCcccceeeeeecceeeecCCCCCceEEE
Q 000673 259 NGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGA 336 (1358)
Q Consensus 259 ~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~ 336 (1358)
.--|+ ..+....+.+-++++.+++.+++.++.|+. +||.....+.. .....+-........-+.+.
T Consensus 143 ~I~~~--------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~----~~~~~~d~l~k~~~~iVWSv 210 (691)
T KOG2048|consen 143 KITYK--------RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH----IITMQLDRLSKREPTIVWSV 210 (691)
T ss_pred eEEEE--------eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE----EeeecccccccCCceEEEEE
Confidence 11111 123344467789999999999999999986 88883322211 00111111111123345566
Q ss_pred EeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeEeeccceEEEee
Q 000673 337 MFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRME 416 (1358)
Q Consensus 337 ~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~L~~v~ 416 (1358)
.|+ ..+ +++.+|..|.++.|+...+. -+-....+..++.++.-..+++++++..
T Consensus 211 ~~L-rd~----------------tI~sgDS~G~V~FWd~~~gT---------LiqS~~~h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 211 LFL-RDS----------------TIASGDSAGTVTFWDSIFGT---------LIQSHSCHDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred EEe-ecC----------------cEEEecCCceEEEEcccCcc---------hhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence 777 555 89999999999999976531 1111223344454555444444444432
Q ss_pred eecccccccccccCeEEEEecCCCCCCCCcceeEEeecCccceeeeccccccCCCCcccccccccccCCccccccccCCC
Q 000673 417 TVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSR 496 (1358)
Q Consensus 417 s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~ 496 (1358)
.|.. +.-|+..... . .|.... .
T Consensus 265 -----vd~~------ii~~~~~~~~--------------~--~wv~~~------------------------------~- 286 (691)
T KOG2048|consen 265 -----VDPK------IIQYSLTTNK--------------S--EWVINS------------------------------R- 286 (691)
T ss_pred -----CCCc------eEEEEecCCc--------------c--ceeeec------------------------------c-
Confidence 1111 2212110000 0 022221 0
Q ss_pred CCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccC---------------------------C
Q 000673 497 QAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH---------------------------N 549 (1358)
Q Consensus 497 ~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~---------------------------~ 549 (1358)
...|...|.+++++.+ .+++|+.|+++.+...-..... .
T Consensus 287 --------r~~h~hdvrs~av~~~------~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~ 352 (691)
T KOG2048|consen 287 --------RDLHAHDVRSMAVIEN------ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKA 352 (691)
T ss_pred --------ccCCcccceeeeeecc------eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecc
Confidence 0123333333332222 2444444444443321100000 0
Q ss_pred CCCCccccCCc---------eEEE-EEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEE---
Q 000673 550 SPGASLKVNSH---------VSRQ-YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITV--- 616 (1358)
Q Consensus 550 ~~~~~~d~~t~---------~~~~-~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~--- 616 (1358)
.....|.+.+. ...+ .+++| ..|.|-+.+ ||| ++++-+.- ...+++.+..-..+..
T Consensus 353 h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~-~nIs~~aiS-----Pdg----~~Ia~st~-~~~~iy~L~~~~~vk~~~v 421 (691)
T KOG2048|consen 353 HGVDLWRLGSVILQGEYNYIHLLKLFTKEK-ENISCAAIS-----PDG----NLIAISTV-SRTKIYRLQPDPNVKVINV 421 (691)
T ss_pred ccccceeccCcccccccChhhheeeecCCc-cceeeeccC-----CCC----CEEEEeec-cceEEEEeccCcceeEEEe
Confidence 01112222111 1111 22333 457777777 888 88887654 3567787764222221
Q ss_pred --EecCCCcEEEEEeCCCCCCCCCCCeEEEEe-CCCcEEEEECCCCc--EEEEec--CCCCCcEEEEEcCCCCEEEEEec
Q 000673 617 --MHHHVAPVRQIILSPPQTEHPWSDCFLSVG-EDFSVALASLETLR--VERMFP--GHPNYPAKVVWDCPRGYIACLCR 689 (1358)
Q Consensus 617 --~~~H~~~V~~l~~spd~~~~~~g~~l~S~s-~D~tV~lwdl~~~~--~~~~l~--gH~~~V~~v~~spd~~~L~~g~~ 689 (1358)
.....-.+..+.|+-| ++.++-++ .+..+...++++.. .+..+. +-...|..+..+|+|+||++.+
T Consensus 422 ~~~~~~~~~a~~i~ftid------~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~- 494 (691)
T KOG2048|consen 422 DDVPLALLDASAISFTID------KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS- 494 (691)
T ss_pred ccchhhhccceeeEEEec------CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe-
Confidence 1223345778888877 56555555 77888888887653 333232 2345789999999999999643
Q ss_pred CCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeec
Q 000673 690 DHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCK 729 (1358)
Q Consensus 690 d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~ 729 (1358)
+ ++.|++|++++++.-.....-...++...+.+
T Consensus 495 -----t--~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~ 527 (691)
T KOG2048|consen 495 -----T--RGQIFVYNLETLESHLLKVRLNIDVTAAAFSP 527 (691)
T ss_pred -----c--cceEEEEEcccceeecchhccCcceeeeeccc
Confidence 2 38999999998765433323335666665553
No 127
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.57 E-value=3.3e-14 Score=176.42 Aligned_cols=186 Identities=24% Similarity=0.297 Sum_probs=150.3
Q ss_pred CCcEEEEEeeccCcccCCEEEEEE--cCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCC
Q 000673 509 EKIVSSSMVISESFYAPYAIVYGF--FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1358)
Q Consensus 509 ~~~Vts~~~i~~~~~~p~~lv~G~--~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~d 586 (1358)
+..|.++.+-++... +++|+ .||.++||..++..+ +...++..-.+.+..+..|.+.|+|+.|+ ||
T Consensus 13 ~~~IfSIdv~pdg~~----~aTgGq~~d~~~~iW~~~~vl~---~~~~~~~~l~k~l~~m~~h~~sv~CVR~S-----~d 80 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVK----FATGGQVLDGGIVIWSQDPVLD---EKEEKNENLPKHLCTMDDHDGSVNCVRFS-----PD 80 (942)
T ss_pred CeeEEEEEecCCcee----EecCCccccccceeeccccccc---hhhhhhcccchhheeeccccCceeEEEEC-----CC
Confidence 445667664333333 88888 789999987654432 11122222234567788999999999998 89
Q ss_pred CCccCcEEEEEeCCCcEEEEeCCC------------------CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCC
Q 000673 587 GWSFNEVLVSGSMDCSIRIWDLGS------------------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1358)
Q Consensus 587 g~~~~~~L~Sgs~D~tI~lWDl~s------------------g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D 648 (1358)
| ++|++||+|+.|.+|+... .++..++.+|.+.|..+.|+|+ +.+++|++.|
T Consensus 81 G----~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~------~~~lvS~s~D 150 (942)
T KOG0973|consen 81 G----SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD------DSLLVSVSLD 150 (942)
T ss_pred C----CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC------ccEEEEeccc
Confidence 9 9999999999999999872 1367889999999999999999 8999999999
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEE
Q 000673 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1358)
Q Consensus 649 ~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~ 724 (1358)
++|.+||.++.+.+..+.+|.+.|..+.|+|-|+||++- +| |++|+||+..+-.+++.+.++-.++..
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASq-------sd-Drtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQ-------SD-DRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred ceEEEEccccceeeeeeecccccccceEECCccCeeeee-------cC-CceEEEEEcccceeeEeeccchhhCCC
Confidence 999999999999999999999999999999999999942 23 699999998887888888887664443
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.2e-13 Score=148.17 Aligned_cols=227 Identities=17% Similarity=0.190 Sum_probs=159.6
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCcccccc
Q 000673 19 VTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKS 98 (1358)
Q Consensus 19 Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1358)
-+|+.|++-|.+||.|+.||.|.|||+.+ ..+..+|.+|.-||++|+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-----~~iar~lsaH~~pi~sl~W--------------------------- 73 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-----FRIARMLSAHVRPITSLCW--------------------------- 73 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-----cchhhhhhccccceeEEEe---------------------------
Confidence 67999999999999999999999999998 6678899999999999965
Q ss_pred cCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCcccc----ccccccccc-
Q 000673 99 SLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSD----HHSFESVEG- 173 (1358)
Q Consensus 99 s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~----~~~~~~~~g- 173 (1358)
|+||..|+|+|.|..+++||+.+|.|..+..++ +|..-..+.+..++.++.|.-.....+++ .|+.-+...
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~----spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d 149 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD----SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD 149 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEEcc----CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc
Confidence 789999999999999999999999999998875 44444444454555566665422211111 122222211
Q ss_pred ----ccc---cccc--cCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEE
Q 000673 174 ----DLV---SEDK--EVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQL 244 (1358)
Q Consensus 174 ----~~~---s~d~--~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vk 244 (1358)
... ++|+ +..+....++.+.++|+.|++++..+.- ..+..|..+-|..- +..++.-+.|+++|
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri--ts~~~IK~I~~s~~------g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI--TSVQAIKQIIVSRK------GRFLIINTSDRVIR 221 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee--chheeeeEEEEecc------CcEEEEecCCceEE
Confidence 111 1333 4556778899999999999999877764 12345778877653 66999999999999
Q ss_pred EecccCcccccccCC--cceecCCcccceEeccCcccCceEEEEecCCcEEEEEe
Q 000673 245 VPISKESHLDREEGN--GLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVL 297 (1358)
Q Consensus 245 vW~l~~~~~~~~~~~--~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~ 297 (1358)
++++.+-...+..++ +.++-. ..++...+ ..+.|+.||..+.-.+
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~q---DvVNk~~W-----k~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQ---DVVNKLQW-----KKCCFSGDGEYVCAGS 268 (405)
T ss_pred EEehhhhcccCccCCcChhHHHH---HHHhhhhh-----hheeecCCccEEEecc
Confidence 999774322223232 222210 12333444 6778899998765554
No 129
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.55 E-value=3.4e-14 Score=158.39 Aligned_cols=134 Identities=19% Similarity=0.299 Sum_probs=119.0
Q ss_pred EEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC-------cEEEEEecCCCcEEEEEeCCCCCCCC
Q 000673 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEHP 637 (1358)
Q Consensus 565 ~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg-------~~l~~~~~H~~~V~~l~~spd~~~~~ 637 (1358)
.+.||+++|..++|+| -+ ++.|+|||.|.+|.||++..+ +++..+.||...|.-++|+|.-
T Consensus 76 ~v~GHt~~vLDi~w~P----fn----D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA---- 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCP----FN----DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA---- 143 (472)
T ss_pred CccCccccccccccCc----cC----CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc----
Confidence 4679999999999996 23 389999999999999999754 3567889999999999999983
Q ss_pred CCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeC
Q 000673 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1358)
Q Consensus 638 ~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~G 717 (1358)
.+.|+|++.|.+|.+||+.+|+.+.++. |..-|+++.|+.||.+|++.|.| ..|||||.++|+.+..-.+
T Consensus 144 -~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD--------KkvRv~dpr~~~~v~e~~~ 213 (472)
T KOG0303|consen 144 -PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD--------KKVRVIDPRRGTVVSEGVA 213 (472)
T ss_pred -hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc--------ceeEEEcCCCCcEeeeccc
Confidence 4789999999999999999999988888 99999999999999999976654 9999999999999988877
Q ss_pred CCC
Q 000673 718 TAS 720 (1358)
Q Consensus 718 H~~ 720 (1358)
|.+
T Consensus 214 heG 216 (472)
T KOG0303|consen 214 HEG 216 (472)
T ss_pred ccC
Confidence 764
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.4e-12 Score=142.03 Aligned_cols=185 Identities=16% Similarity=0.113 Sum_probs=122.6
Q ss_pred ccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCC
Q 000673 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1358)
Q Consensus 480 ~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t 559 (1358)
+.+.+..|.+|+.. |+....+......-+..++.+++.| ++..+.--++++|..-...+ ..+++
T Consensus 204 sas~dt~i~lw~lk-----Gq~L~~idtnq~~n~~aavSP~GRF----ia~~gFTpDVkVwE~~f~kd-------G~fqe 267 (420)
T KOG2096|consen 204 SASLDTKICLWDLK-----GQLLQSIDTNQSSNYDAAVSPDGRF----IAVSGFTPDVKVWEPIFTKD-------GTFQE 267 (420)
T ss_pred EecCCCcEEEEecC-----CceeeeeccccccccceeeCCCCcE----EEEecCCCCceEEEEEeccC-------cchhh
Confidence 34445556666653 1222222222222233445666677 77777777888865321111 12333
Q ss_pred ceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCC-------CcEEEEE----ecCCCcEEEEE
Q 000673 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-------GNLITVM----HHHVAPVRQII 628 (1358)
Q Consensus 560 ~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~s-------g~~l~~~----~~H~~~V~~l~ 628 (1358)
-.....|+||+..|+.++|+ +++ ..++|.|.||++|+||++- .+.++.+ ..-.+.-..+.
T Consensus 268 v~rvf~LkGH~saV~~~aFs-----n~S----~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ 338 (420)
T KOG2096|consen 268 VKRVFSLKGHQSAVLAAAFS-----NSS----TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLE 338 (420)
T ss_pred hhhhheeccchhheeeeeeC-----CCc----ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEE
Confidence 33567899999999999998 566 8999999999999999862 2333333 12233344899
Q ss_pred eCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEec-CCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEE
Q 000673 629 LSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1358)
Q Consensus 629 ~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~-gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd 705 (1358)
++|+ |+.|+.. ...+++++..++|+..-.+. .|...|.++.|+++|+|+++ ++| +.++|.-
T Consensus 339 lsP~------g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at-------cGd--r~vrv~~ 400 (420)
T KOG2096|consen 339 LSPS------GDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT-------CGD--RYVRVIR 400 (420)
T ss_pred eCCC------CcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee-------ecc--eeeeeec
Confidence 9999 7766554 44579999999998776664 58889999999999999995 343 7888865
No 131
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.53 E-value=4.5e-12 Score=147.51 Aligned_cols=120 Identities=18% Similarity=0.298 Sum_probs=106.4
Q ss_pred CCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC-------cEEEEEecCCCcEEEEEeCCCCCCCCCCCeE
Q 000673 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSPPQTEHPWSDCF 642 (1358)
Q Consensus 570 ~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg-------~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l 642 (1358)
...|+.+.|.| -|. +.|+.++.|+.|++|.+..+ .+...+++|...|+++.|+|-. .+.+
T Consensus 627 gt~vtDl~WdP----FD~----~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-----advL 693 (1012)
T KOG1445|consen 627 GTLVTDLHWDP----FDD----ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA-----ADVL 693 (1012)
T ss_pred CceeeecccCC----CCh----HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh-----hhHh
Confidence 45799999986 344 89999999999999999754 3567789999999999999973 4789
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe
Q 000673 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1358)
Q Consensus 643 ~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~ 710 (1358)
++++.|-+|+|||+++++....+.||.+.|..++|+|+|+.+++.|.| |+||||+.++++
T Consensus 694 a~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD--------g~~rVy~Prs~e 753 (1012)
T KOG1445|consen 694 AVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD--------GTLRVYEPRSRE 753 (1012)
T ss_pred hhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecC--------ceEEEeCCCCCC
Confidence 999999999999999999999999999999999999999999987764 999999998764
No 132
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=1.2e-13 Score=157.03 Aligned_cols=214 Identities=17% Similarity=0.221 Sum_probs=164.4
Q ss_pred eecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccc----cC-CceEEEEE-ecCCCCEEEE
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK----VN-SHVSRQYF-LGHTGAVLCL 576 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d----~~-t~~~~~~l-~gH~~~V~~l 576 (1358)
..+..|.-.|+++++.+++.| .+.++.+|+|.=|.. ..+.... ..|. .+ .+.+.+.- ++|...|.++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~----~fsask~g~i~kw~v--~tgk~~~-~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKR----VFSASKDGTILKWDV--LTGKKDR-YIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred eeeccccCcceEEEeeccccc----eeecCCCcceeeeeh--hcCcccc-cccccchhhhhccCCCCcccccccceeEEE
Confidence 445779999999998888888 999999997766442 2211000 0010 00 11111111 4899999999
Q ss_pred EEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEEC
Q 000673 577 AAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1358)
Q Consensus 577 ~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl 656 (1358)
+.+ +|| ++|++|+.|..|.|||.++.+.++.|.+|.+.|.+++|-.. -..+.+++.|++|++|++
T Consensus 209 avS-----~Dg----kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g------t~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 209 AVS-----SDG----KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG------TSELYSASADRSVKVWSI 273 (479)
T ss_pred EEc-----CCC----cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC------ccceeeeecCCceEEEeh
Confidence 998 888 99999999999999999999999999999999999999765 568999999999999999
Q ss_pred CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeeccccccee
Q 000673 657 ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSI 736 (1358)
Q Consensus 657 ~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~ 736 (1358)
+....+.++.||...|..|.-..-++.+.+|+. |+++++|++. -+.-..+.||.+.+-++.|-++ ...+
T Consensus 274 ~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgr--------DrT~rlwKi~-eesqlifrg~~~sidcv~~In~--~Hfv 342 (479)
T KOG0299|consen 274 DQLSYVETLYGHQDGVLGIDALSRERCVTVGGR--------DRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND--EHFV 342 (479)
T ss_pred hHhHHHHHHhCCccceeeechhcccceEEeccc--------cceeEEEecc-ccceeeeeCCCCCeeeEEEecc--ccee
Confidence 999999999999999999988877887776544 4999999994 3444567899877766655432 2334
Q ss_pred ecceecCcccccCCccccccCCcEEEEeC
Q 000673 737 SGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 737 sGs~l~g~~~~s~~l~~~~~D~tvr~W~~ 765 (1358)
+|+ .||.|-.|++
T Consensus 343 sGS----------------dnG~IaLWs~ 355 (479)
T KOG0299|consen 343 SGS----------------DNGSIALWSL 355 (479)
T ss_pred ecc----------------CCceEEEeee
Confidence 444 5899999986
No 133
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.53 E-value=7.8e-14 Score=150.95 Aligned_cols=177 Identities=17% Similarity=0.277 Sum_probs=145.3
Q ss_pred CceeecccCCCcEEEEEeeccCcccCC--EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEE
Q 000673 500 DGRDDFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLA 577 (1358)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~i~~~~~~p~--~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~ 577 (1358)
..+.++-.|...|+.+. |+|. .|++|+.|++|++.+|.... -.+..++| .-...|.++.
T Consensus 163 PvIRTlYDH~devn~l~------FHPre~ILiS~srD~tvKlFDfsK~s------------aKrA~K~~-qd~~~vrsiS 223 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLD------FHPRETILISGSRDNTVKLFDFSKTS------------AKRAFKVF-QDTEPVRSIS 223 (430)
T ss_pred ceEeehhhccCccccee------ecchhheEEeccCCCeEEEEecccHH------------HHHHHHHh-hccceeeeEe
Confidence 35667778999999977 6775 49999999999996664211 01112233 2357899999
Q ss_pred EeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEE---ecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEE
Q 000673 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM---HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1358)
Q Consensus 578 ~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~---~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lw 654 (1358)
|| |.| .+|+.|..--++++||+.+-+|...- .+|++.|+++.+++. |++.++++.||.|+||
T Consensus 224 fH-----PsG----efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t------~~lYvTaSkDG~Iklw 288 (430)
T KOG0640|consen 224 FH-----PSG----EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSST------GSLYVTASKDGAIKLW 288 (430)
T ss_pred ec-----CCC----ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCC------ccEEEEeccCCcEEee
Confidence 99 778 99999999999999999998886553 479999999999999 8999999999999999
Q ss_pred ECCCCcEEEEec-CCC-CCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCC
Q 000673 655 SLETLRVERMFP-GHP-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1358)
Q Consensus 655 dl~~~~~~~~l~-gH~-~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH 718 (1358)
|=-+++|+.++. .|. ..|.+..|..+++|++ ++++|.+|++|++.||+++.++.|-
T Consensus 289 DGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL--------sSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 289 DGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL--------SSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred ccccHHHHHHHHhhcCCceeeeEEEccCCeEEe--------ecCCcceeeeeeecCCceEEEEecC
Confidence 999999998884 564 4688999999999999 4555699999999999999999875
No 134
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.52 E-value=5.5e-13 Score=144.79 Aligned_cols=212 Identities=17% Similarity=0.192 Sum_probs=144.9
Q ss_pred cCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCC
Q 000673 507 HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAK 586 (1358)
Q Consensus 507 ~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~d 586 (1358)
+..+.|.++.|.+...+ .+++|+.||+|++|.+...+.. . + +....|.++|.+++|+ .|
T Consensus 25 pP~DsIS~l~FSP~~~~---~~~A~SWD~tVR~wevq~~g~~----------~--~-ka~~~~~~PvL~v~Ws-----dd 83 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADN---LLAAGSWDGTVRIWEVQNSGQL----------V--P-KAQQSHDGPVLDVCWS-----DD 83 (347)
T ss_pred CcccchheeEeccccCc---eEEecccCCceEEEEEecCCcc----------c--c-hhhhccCCCeEEEEEc-----cC
Confidence 34567778775442222 4779999999999887643221 1 1 4456799999999998 78
Q ss_pred CCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEec
Q 000673 587 GWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666 (1358)
Q Consensus 587 g~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~ 666 (1358)
| ..+++|+.|+.+++||+.+++ ..++..|.++|.++.|-+... -++|++||+|++++.||++...++.++.
T Consensus 84 g----skVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~----~~cl~TGSWDKTlKfWD~R~~~pv~t~~ 154 (347)
T KOG0647|consen 84 G----SKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMN----YQCLVTGSWDKTLKFWDTRSSNPVATLQ 154 (347)
T ss_pred C----ceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCC----cceeEecccccceeecccCCCCeeeeee
Confidence 8 999999999999999999994 677889999999999987622 3599999999999999999765443332
Q ss_pred -------------------------------------CCCC----CcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEE
Q 000673 667 -------------------------------------GHPN----YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1358)
Q Consensus 667 -------------------------------------gH~~----~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd 705 (1358)
.+.+ .+.+|+..+|.+..+.|+ .. |.+.|-.
T Consensus 155 LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs------iE--Grv~iq~ 226 (347)
T KOG0647|consen 155 LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS------IE--GRVAIQY 226 (347)
T ss_pred ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee------ec--ceEEEEe
Confidence 1111 256777766666555443 33 7888888
Q ss_pred CCCC--eEEEEEeCCCCc------eEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCcccc
Q 000673 706 VKTG--ARERVLRGTASH------SMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERG 771 (1358)
Q Consensus 706 ~~tg--~~~~~l~GH~~~------v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~~~ 771 (1358)
+..+ +.-.+|+-|+.. |..+ +++... .+-+.++.+..||++..|| +...++
T Consensus 227 id~~~~~~nFtFkCHR~~~~~~~~VYaV---Nsi~Fh-----------P~hgtlvTaGsDGtf~FWD-kdar~k 285 (347)
T KOG0647|consen 227 IDDPNPKDNFTFKCHRSTNSVNDDVYAV---NSIAFH-----------PVHGTLVTAGSDGTFSFWD-KDARTK 285 (347)
T ss_pred cCCCCccCceeEEEeccCCCCCCceEEe---cceEee-----------cccceEEEecCCceEEEec-chhhhh
Confidence 7766 444566667632 2111 111111 1234466777899999998 433333
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.52 E-value=4e-11 Score=138.11 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=70.7
Q ss_pred EEEEEeccccCCCCCccCcE-EEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEE-eCCCcE
Q 000673 574 LCLAAHRMVGTAKGWSFNEV-LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV-GEDFSV 651 (1358)
Q Consensus 574 ~~l~~sp~~~~~dg~~~~~~-L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~-s~D~tV 651 (1358)
..++|+ ||| ++ +++.+.++++.+||+.+++.+..+. +...+.+++|+|+ |+.++++ +.+++|
T Consensus 210 ~~i~~s-----~dg----~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~------g~~l~~~~~~~~~i 273 (300)
T TIGR03866 210 VGIKLT-----KDG----KTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPD------EKYLLTTNGVSNDV 273 (300)
T ss_pred cceEEC-----CCC----CEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCC------CCEEEEEcCCCCeE
Confidence 356777 777 55 4555667789999999988876653 4567999999999 7888776 569999
Q ss_pred EEEECCCCcEEEEecCCCCCcEEEEEcC
Q 000673 652 ALASLETLRVERMFPGHPNYPAKVVWDC 679 (1358)
Q Consensus 652 ~lwdl~~~~~~~~l~gH~~~V~~v~~sp 679 (1358)
++||+++++++..++.. ..++.++++|
T Consensus 274 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 274 SVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999999999988754 5678998876
No 136
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.6e-12 Score=151.33 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=79.6
Q ss_pred EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000673 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1358)
Q Consensus 527 ~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lW 606 (1358)
.|++|+.|+.+...+.+.. .++.+.++-|...|+.|+||+ .= .+++||+.|+++.|+
T Consensus 621 nli~gs~d~k~~WfDldls--------------skPyk~lr~H~~avr~Va~H~-----ry----PLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLS--------------SKPYKTLRLHEKAVRSVAFHK-----RY----PLFASGSDDGTVIVF 677 (733)
T ss_pred eEEEecCCCeeEEEEcccC--------------cchhHHhhhhhhhhhhhhhcc-----cc----ceeeeecCCCcEEEE
Confidence 3899999999988555532 236788999999999999994 22 799999999999998
Q ss_pred eCC------CC---cEEEEEecCCCc----EEEEEeCCCCCCCCCCCeEEEEeCCCcEEEE
Q 000673 607 DLG------SG---NLITVMHHHVAP----VRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1358)
Q Consensus 607 Dl~------sg---~~l~~~~~H~~~----V~~l~~spd~~~~~~g~~l~S~s~D~tV~lw 654 (1358)
--. .. -++..+.+|... |..+.|+|. .-++.|++.|++|++|
T Consensus 678 hg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~------qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 678 HGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR------QPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeehhhhcCCceEeeeeccCceeecccceEeecccCC------CceEEecCCCceEEee
Confidence 422 11 246788898755 888999998 5689999999999998
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.50 E-value=7.7e-13 Score=155.30 Aligned_cols=247 Identities=15% Similarity=0.147 Sum_probs=161.5
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccC--CC-CCCc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH--NS-PGAS 554 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~--~~-~~~~ 554 (1358)
+...+.+++++.|++...+..+.. .+.||...|.+.++.+.+ |.-+++|+.||.|.+|+.-....- .. ....
T Consensus 115 lVsasGDsT~r~Wdvk~s~l~G~~--~~~GH~~SvkS~cf~~~n---~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 115 LVSASGDSTIRPWDVKTSRLVGGR--LNLGHTGSVKSECFMPTN---PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred EEEccCCceeeeeeeccceeecce--eecccccccchhhhccCC---CcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence 445566778888888877665532 468999999996644433 335899999999999875433210 00 0000
Q ss_pred cccCCc---------eEEEEEecCCCC----EEEEEEeccccCCCCCccCcEEEEEeC-CCcEEEEeCCCCcEEE-----
Q 000673 555 LKVNSH---------VSRQYFLGHTGA----VLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGSGNLIT----- 615 (1358)
Q Consensus 555 ~d~~t~---------~~~~~l~gH~~~----V~~l~~sp~~~~~dg~~~~~~L~Sgs~-D~tI~lWDl~sg~~l~----- 615 (1358)
.+...+ +-.+.-..|.+. |+.+.| .|. ..|+|+|. |++|++||++...+..
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f------kDe----~tlaSaga~D~~iKVWDLRk~~~~~r~ep~ 259 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF------KDE----STLASAGAADSTIKVWDLRKNYTAYRQEPR 259 (720)
T ss_pred hccccCCCCCCchhhccccccccccCceeeeeEEEEE------ecc----ceeeeccCCCcceEEEeecccccccccCCC
Confidence 000011 011122334444 555655 454 89999998 9999999998754322
Q ss_pred ---EEecC---CCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC--cEEEEecCCCCC--cEEEEEcCCCCEEE
Q 000673 616 ---VMHHH---VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--RVERMFPGHPNY--PAKVVWDCPRGYIA 685 (1358)
Q Consensus 616 ---~~~~H---~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~--~~~~~l~gH~~~--V~~v~~spd~~~L~ 685 (1358)
.+..| .-.+.++..... |.++...+.|++|.+||+.+- .++..+.+|... -..-..+||+.+++
T Consensus 260 ~~~~~~t~skrs~G~~nL~lDss------Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 260 GSDKYPTHSKRSVGQVNLILDSS------GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred cccCccCcccceeeeEEEEecCC------CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 23333 224566666544 777777777999999999864 456667766432 12445689999999
Q ss_pred EEecCCccccCCCCeEEEEECCCCe-EEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEe
Q 000673 686 CLCRDHSRTSDAVDVLFIWDVKTGA-RERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 686 ~g~~d~sgssD~DgtV~vWd~~tg~-~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~ 764 (1358)
+ |++| ..+++|.+.+.+ ....+.||+-+|+.+.+|+... ...+.+++|.++++|+
T Consensus 334 S------gSsd--~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~----------------t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 334 S------GSSD--EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT----------------TPVATCSDDFRVKIWR 389 (720)
T ss_pred c------cCCC--cceeeeeecCccCChhhhhCcceEEEEEeeccccC----------------CCceeeccCcceEEEe
Confidence 4 4554 899999998854 4567889999999988875322 3345567899999999
Q ss_pred CCCcc
Q 000673 765 IQNDE 769 (1358)
Q Consensus 765 ~~~~~ 769 (1358)
+.+..
T Consensus 390 l~~~l 394 (720)
T KOG0321|consen 390 LSNGL 394 (720)
T ss_pred ccCch
Confidence 85543
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2.5e-12 Score=156.73 Aligned_cols=237 Identities=17% Similarity=0.205 Sum_probs=172.4
Q ss_pred ceeEeEeeccceEEEeeeecccccccccccCeEEEEecCCCCCCCCcceeEEe-ecCccceeeeccccccCCCCcccccc
Q 000673 400 KFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGKQCRMVG-EGFSFVDWVNNSTFLDENEGSCTGKS 478 (1358)
Q Consensus 400 ~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~~~~~l~-~g~~~g~w~~~~~~~~~~~g~~i~~l 478 (1358)
-+.++|.++|.+|++.. .++. |++|......+ . ...+. .|.. -.|. ...+ ..+
T Consensus 16 ~t~i~~d~~gefi~tcg-----sdg~------ir~~~~~sd~e--~--P~ti~~~g~~-v~~i-------a~~s---~~f 69 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCG-----SDGD------IRKWKTNSDEE--E--PETIDISGEL-VSSI-------ACYS---NHF 69 (933)
T ss_pred eEEEEEcCCCCEEEEec-----CCCc------eEEeecCCccc--C--CchhhccCce-eEEE-------eecc---cce
Confidence 46788999999888776 3444 89996322211 1 11222 2211 0011 1111 145
Q ss_pred cccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccC
Q 000673 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1358)
Q Consensus 479 ~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~ 558 (1358)
..++.++++.........+.+ . +..-+-++..+.|..++.+ ++.|+.|-.|++++.+
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~-i---L~Rftlp~r~~~v~g~g~~----iaagsdD~~vK~~~~~--------------- 126 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT-I---LARFTLPIRDLAVSGSGKM----IAAGSDDTAVKLLNLD--------------- 126 (933)
T ss_pred EEeeccceEEEeeCCCCCccc-e---eeeeeccceEEEEecCCcE----EEeecCceeEEEEecc---------------
Confidence 667778888888776654432 1 2233456777777777777 9999999999996543
Q ss_pred CceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecC--------CCcEEEEEeC
Q 000673 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--------VAPVRQIILS 630 (1358)
Q Consensus 559 t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H--------~~~V~~l~~s 630 (1358)
+.....+++||.++|.+|.|+ |.+ ++||+.+.||+|++||+.++.+.+++.+- ...+..++|+
T Consensus 127 D~s~~~~lrgh~apVl~l~~~-----p~~----~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~ 197 (933)
T KOG1274|consen 127 DSSQEKVLRGHDAPVLQLSYD-----PKG----NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH 197 (933)
T ss_pred ccchheeecccCCceeeeeEc-----CCC----CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeec
Confidence 334578899999999999998 677 99999999999999999999887776542 4567889999
Q ss_pred CCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecC--CCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 631 PPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG--HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 631 pd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~g--H~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
|+ |..++..+.|++|++|+..++.....+.. |...+..+.|+|.|.||+.+ +.||.|-|||.++
T Consensus 198 Pk------~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs--------~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 198 PK------GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAS--------TLDGQILVWNVDT 263 (933)
T ss_pred CC------CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeee--------ccCCcEEEEeccc
Confidence 99 78899999999999999999988877754 33448899999999999943 3359999999997
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.5e-12 Score=141.63 Aligned_cols=177 Identities=19% Similarity=0.314 Sum_probs=134.5
Q ss_pred EEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccC
Q 000673 512 VSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFN 591 (1358)
Q Consensus 512 Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~ 591 (1358)
-.++.|...+.+ ++.|+.||.|.||+|+ |...-+.|.+|..+|+|++|+ +||
T Consensus 26 a~~~~Fs~~G~~----lAvGc~nG~vvI~D~~---------------T~~iar~lsaH~~pi~sl~WS-----~dg---- 77 (405)
T KOG1273|consen 26 AECCQFSRWGDY----LAVGCANGRVVIYDFD---------------TFRIARMLSAHVRPITSLCWS-----RDG---- 77 (405)
T ss_pred cceEEeccCcce----eeeeccCCcEEEEEcc---------------ccchhhhhhccccceeEEEec-----CCC----
Confidence 445555555555 9999999999997766 333557789999999999998 888
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCC-------------------------------------
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT------------------------------------- 634 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~------------------------------------- 634 (1358)
+.|+|+|.|..|++||+..|.+++++. ...+|+...|+|...
T Consensus 78 r~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred CEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence 999999999999999999999988774 345666666666421
Q ss_pred ----CCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCC-CCcE------------------------------------
Q 000673 635 ----EHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP-NYPA------------------------------------ 673 (1358)
Q Consensus 635 ----~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~-~~V~------------------------------------ 673 (1358)
+.+.|+++.+|..-|.+.++|.++.+|+..++--. ..|.
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 23789999999999999999999887765554222 2222
Q ss_pred -----------------EEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEE
Q 000673 674 -----------------KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1358)
Q Consensus 674 -----------------~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~ 724 (1358)
+++|+.+|.|+.. |+ .+-..+|||.-..|.+++.|+|..+....
T Consensus 237 ~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a------~s-~~aHaLYIWE~~~GsLVKILhG~kgE~l~ 297 (405)
T KOG1273|consen 237 VEPEHKLQDVVNKLQWKKCCFSGDGEYVCA------GS-ARAHALYIWEKSIGSLVKILHGTKGEELL 297 (405)
T ss_pred cChhHHHHHHHhhhhhhheeecCCccEEEe------cc-ccceeEEEEecCCcceeeeecCCchhhee
Confidence 4566666666652 23 23478999999999999999998866654
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.49 E-value=2e-12 Score=147.34 Aligned_cols=207 Identities=16% Similarity=0.102 Sum_probs=162.7
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
+......+.+++|+.... -....+.+|...|+++.|-..+.| |++++..|+|.+.. +
T Consensus 94 ~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~Dey----iAsvs~gGdiiih~---------------~ 150 (673)
T KOG4378|consen 94 EISGGQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEY----IASVSDGGDIIIHG---------------T 150 (673)
T ss_pred eeccCcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcce----eEEeccCCcEEEEe---------------c
Confidence 334556778999998632 234556899999999999999999 99999999999943 3
Q ss_pred CCceEEEEEecC-CCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEE-ecCCCcEEEEEeCCCCCC
Q 000673 558 NSHVSRQYFLGH-TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTE 635 (1358)
Q Consensus 558 ~t~~~~~~l~gH-~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~-~~H~~~V~~l~~spd~~~ 635 (1358)
.++.....|.-- ...|.-|.|+| ....+|.++|.+|+|.+||+....+++.+ ..|..|...|+|+|.+
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~--------skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn-- 220 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSP--------SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN-- 220 (673)
T ss_pred ccCccccceecCCCCeEEEeeccc--------ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc--
Confidence 344333444322 23455888984 23478999999999999999877777654 5799999999999984
Q ss_pred CCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC-CeEEEE
Q 000673 636 HPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-GARERV 714 (1358)
Q Consensus 636 ~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t-g~~~~~ 714 (1358)
..+|++.+.|+.|.+||++..+....+... .+...|+|.++|.+|+. |++- |.|+-||++. ...+.+
T Consensus 221 ---e~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-~Plstvaf~~~G~~L~a------G~s~--G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 221 ---EALLVSVGYDKKINIYDIRSQASTDRLTYS-HPLSTVAFSECGTYLCA------GNSK--GELIAYDMRSTKAPVAV 288 (673)
T ss_pred ---cceEEEecccceEEEeecccccccceeeec-CCcceeeecCCceEEEe------ecCC--ceEEEEecccCCCCceE
Confidence 569999999999999999987776655533 37889999999999984 3443 8999999986 678999
Q ss_pred EeCCCCceEEEeeec
Q 000673 715 LRGTASHSMFDHFCK 729 (1358)
Q Consensus 715 l~GH~~~v~~~~~~~ 729 (1358)
+..|...|+.+.|-.
T Consensus 289 ~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 289 RSAHDASVTRVAFQP 303 (673)
T ss_pred eeecccceeEEEeee
Confidence 999999999887764
No 141
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2.3e-13 Score=148.07 Aligned_cols=168 Identities=20% Similarity=0.249 Sum_probs=125.1
Q ss_pred EEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCc-----EEEEEecCCCcEEEEEeCCCCCC--
Q 000673 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-----LITVMHHHVAPVRQIILSPPQTE-- 635 (1358)
Q Consensus 563 ~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~-----~l~~~~~H~~~V~~l~~spd~~~-- 635 (1358)
...|+||.+.|+|++|+ .|| +.|+|++.|++|++||++... +++.- ..-+--+.+.|+||...
T Consensus 79 ~~~LKgH~~~vt~~~Fs-----SdG----K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~v 148 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFS-----SDG----KKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVV 148 (420)
T ss_pred hhhhhccCCceeeeEEc-----CCC----ceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEE
Confidence 45688999999999998 788 999999999999999997532 11111 11122345555555111
Q ss_pred -----------------------------------------------CCCCCeEEEEeCCCcEEEEECCCCcEEEEecCC
Q 000673 636 -----------------------------------------------HPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668 (1358)
Q Consensus 636 -----------------------------------------------~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH 668 (1358)
.-.+.+++|++.|..|.|||++ |+.+..+...
T Consensus 149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 0236799999999999999999 9998888766
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC---CCCe-----EEEEEeCCCCceEEEeeecccccceeecce
Q 000673 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV---KTGA-----RERVLRGTASHSMFDHFCKGISMNSISGSV 740 (1358)
Q Consensus 669 ~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~---~tg~-----~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~ 740 (1358)
...-+..+.+|+|+|+++.++ + --|+||++ +.|+ .+..|+||++.|+...|++.
T Consensus 228 q~~n~~aavSP~GRFia~~gF----T----pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~---------- 289 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGRFIAVSGF----T----PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS---------- 289 (420)
T ss_pred cccccceeeCCCCcEEEEecC----C----CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC----------
Confidence 666778999999999997654 2 35999986 3342 35678999999998877642
Q ss_pred ecCcccccCCccccccCCcEEEEeCC
Q 000673 741 LNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 741 l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
|..++++++||++|+||..
T Consensus 290 -------S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 290 -------STRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred -------cceeEEEecCCcEEEeecc
Confidence 2345677789999999963
No 142
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=4e-11 Score=146.51 Aligned_cols=521 Identities=12% Similarity=0.062 Sum_probs=272.6
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCcccccccC
Q 000673 21 ATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSL 100 (1358)
Q Consensus 21 ava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 100 (1358)
.-.||+|+++++-. .+..|.|+...+ +.++..|.+|.++++.+.+..- .+
T Consensus 21 ~avfSnD~k~l~~~-~~~~V~VyS~~T-----g~~i~~l~~~~a~l~s~~~~~~------------------------~~ 70 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC-TGNFVKVYSTAT-----GECITSLEDHTAPLTSVIVLPS------------------------SE 70 (792)
T ss_pred ccccccCCcEEEEe-eCCEEEEEecch-----HhhhhhcccccCccceeeecCC------------------------Cc
Confidence 35789999999864 678999999998 5677799999999999977433 34
Q ss_pred CCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeC-CCCCceEEEEeeccCCcccccccc-ccccccccc-
Q 000673 101 DNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLP-SNPRYVCIGCCFIDTNQLSDHHSF-ESVEGDLVS- 177 (1358)
Q Consensus 101 d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~-~~~~~~~l~c~~~~~~~~~~~~~~-~~~~g~~~s- 177 (1358)
.-.++++.+.||+|++||..+|..+.+..... ..+..+.... .... ..++-+. ++-.++..-+. -.+++.-..
T Consensus 71 ~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~--~v~~~~~~~~~a~~s-~~~~~s~-~~~~~~~~~s~~~~~q~~~~~~ 146 (792)
T KOG1963|consen 71 NANYLIVCSLDGTIRVWDWSDGELLKTFDNNL--PVHALVYKPAQADIS-ANVYVSV-EDYSILTTFSKKLSKQSSRFVL 146 (792)
T ss_pred cceEEEEEecCccEEEecCCCcEEEEEEecCC--ceeEEEechhHhCcc-ceeEeec-ccceeeeecccccccceeeeEe
Confidence 44789999999999999999999998765531 1111111000 1100 1111110 11111110000 001111111
Q ss_pred ---------ccccCCC-------------CCCCCceEEEEeCCCce-EEEEEEecccccCCcceEEEeecCCCCCcceEE
Q 000673 178 ---------EDKEVPM-------------KNPPKCTLVIVDTYGLT-IVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGL 234 (1358)
Q Consensus 178 ---------~d~~~~~-------------~~~~~~~I~i~D~~tl~-v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~l 234 (1358)
+..+.+. .-...+.+.+|+..+.. ..........|..++.+.++... +.++
T Consensus 147 ~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn------~~~~ 220 (792)
T KOG1963|consen 147 ATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN------ERYL 220 (792)
T ss_pred eeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccc------cceE
Confidence 0001100 00112223333332221 11111111112333666777643 5699
Q ss_pred EEecCCcEEEEecccCcccccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce--EEeecCCCccc
Q 000673 235 MVDSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTI 312 (1358)
Q Consensus 235 la~s~dg~vkvW~l~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~ 312 (1358)
+++..||.+.+|.--.. +. ...+..++.+|...|.+++|++||..+++++..+. +|.+ ++++
T Consensus 221 Aa~d~dGrI~vw~d~~~-----------~~--~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~-~T~~-- 284 (792)
T KOG1963|consen 221 AAGDSDGRILVWRDFGS-----------SD--DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL-ETGK-- 284 (792)
T ss_pred EEeccCCcEEEEecccc-----------cc--ccccceEEEecccccceeEEecCCceEeecccceEEEEEee-cCCC--
Confidence 99999999999985541 00 33355678899999999999999999999999888 5555 4443
Q ss_pred ceeeeeecceeeecCCCCCceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCCCcccc-C
Q 000673 313 GEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEI-P 391 (1358)
Q Consensus 313 ~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i-~ 391 (1358)
.+| |-.. +..+.+-.+.++++ .+.+-..|.++.+-..+.........++... +
T Consensus 285 kqf------LPRL----gs~I~~i~vS~ds~----------------~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~ 338 (792)
T KOG1963|consen 285 KQF------LPRL----GSPILHIVVSPDSD----------------LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP 338 (792)
T ss_pred ccc------cccc----CCeeEEEEEcCCCC----------------eEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence 333 2212 23445555554444 6667777888888777543222222221111 1
Q ss_pred C-ccCCCCCceeEeEeeccc-eEEEeeeecccccccccccCeEEEEecCCCC-----------CCCCc-ceeEEe---ec
Q 000673 392 A-VSYPSGVKFSIHFIQMSL-YLLRMETVCFHVEETSQWRPYISVWSLSQKH-----------SGPGK-QCRMVG---EG 454 (1358)
Q Consensus 392 ~-~~~~~~~~~~~~f~~~~~-~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~-----------~~~~~-~~~~l~---~g 454 (1358)
. ...+++..+.+...+.-+ .++.. + +.++.+|++.... ...+. ..+... .-
T Consensus 339 ~~k~~~~~l~t~~~idpr~~~~vln~------~------~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~ 406 (792)
T KOG1963|consen 339 STKTRPQSLTTGVSIDPRTNSLVLNG------H------PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR 406 (792)
T ss_pred cccccccccceeEEEcCCCCceeecC------C------CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh
Confidence 1 111223333333333111 11110 1 1124444432221 01111 000000 01
Q ss_pred CccceeeeccccccCCCCcccccccccccCCccccccccCCCCCCCcee-ecccCCCcEEEEEeeccCcccCCEEEEEEc
Q 000673 455 FSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRD-DFVHKEKIVSSSMVISESFYAPYAIVYGFF 533 (1358)
Q Consensus 455 ~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~-~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~ 533 (1358)
+.+|.|....-...+ +.........++.|........-.+.. ...+|+..+.+..+..... ..+.++++.
T Consensus 407 ~~~gs~maT~E~~~d-------~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r--s~~~vta~~ 477 (792)
T KOG1963|consen 407 SRFGSWMATLEARID-------KFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR--SVRCVTASV 477 (792)
T ss_pred hccceEEEEeeeeeh-------hhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc--cceeEEecc
Confidence 122334332100000 111112234466677654332222222 2367877766654333222 226899999
Q ss_pred CCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCC-Cc
Q 000673 534 SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS-GN 612 (1358)
Q Consensus 534 dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~s-g~ 612 (1358)
||.+++|-+............|-+ ..+..| |...+++++|+ .|| -+++.|.|++|.+||..+ .+
T Consensus 478 dg~~KiW~~~~~~n~~k~~s~W~c---~~i~sy--~k~~i~a~~fs-----~dG-----slla~s~~~~Itiwd~~~~~~ 542 (792)
T KOG1963|consen 478 DGDFKIWVFTDDSNIYKKSSNWTC---KAIGSY--HKTPITALCFS-----QDG-----SLLAVSFDDTITIWDYDTKNE 542 (792)
T ss_pred CCeEEEEEEecccccCcCccceEE---eeeecc--ccCcccchhhc-----CCC-----cEEEEecCCEEEEecCCChhh
Confidence 999999998654444444444522 233333 88999999997 676 567788999999999988 44
Q ss_pred EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEE
Q 000673 613 LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER 663 (1358)
Q Consensus 613 ~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~ 663 (1358)
++.....-..++..+.+..... ....+.........+|++-++...-
T Consensus 543 l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 543 LLCTEGSRNWPIAELLFTAQTQ----NDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred hhccccccccchHhHhhhcccc----cccceeeccCceEehHhhhhhheec
Confidence 4444433333444444432211 1234444556788999998877665
No 143
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.48 E-value=1.2e-12 Score=146.28 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=137.6
Q ss_pred cccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccC
Q 000673 505 FVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1358)
Q Consensus 505 ~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~ 584 (1358)
+.+|+++|-.....+.+. .-|++|++|.+|.||..-..+.. ..--+++..|.||+.+|.-++|||..
T Consensus 77 v~GHt~~vLDi~w~PfnD---~vIASgSeD~~v~vW~IPe~~l~--------~~ltepvv~L~gH~rrVg~V~wHPtA-- 143 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFND---CVIASGSEDTKVMVWQIPENGLT--------RDLTEPVVELYGHQRRVGLVQWHPTA-- 143 (472)
T ss_pred ccCccccccccccCccCC---ceeecCCCCceEEEEECCCcccc--------cCcccceEEEeecceeEEEEeecccc--
Confidence 467888887755222221 25999999999999765322110 11225789999999999999999732
Q ss_pred CCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEE
Q 000673 585 AKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1358)
Q Consensus 585 ~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~ 664 (1358)
.+.|+|++.|.+|.+||+.+|+.+-++. |.+-|.++.|+-+ |.++++.+.|+.||+||.++++.+..
T Consensus 144 ------~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~d------Gs~l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 144 ------PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRD------GSLLCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred ------hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccC------CceeeeecccceeEEEcCCCCcEeee
Confidence 3899999999999999999999988887 9999999999999 99999999999999999999999998
Q ss_pred ecCCCC-CcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 665 FPGHPN-YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 665 l~gH~~-~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
-.+|.+ ....+.|-.++.++.+| +. .-+ ++.+-+||...
T Consensus 211 ~~~heG~k~~Raifl~~g~i~tTG-fs--r~s--eRq~aLwdp~n 250 (472)
T KOG0303|consen 211 GVAHEGAKPARAIFLASGKIFTTG-FS--RMS--ERQIALWDPNN 250 (472)
T ss_pred cccccCCCcceeEEeccCceeeec-cc--ccc--ccceeccCccc
Confidence 888865 45688898899955544 32 233 48999998764
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.48 E-value=4.5e-12 Score=136.82 Aligned_cols=198 Identities=20% Similarity=0.230 Sum_probs=135.1
Q ss_pred cccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccC-----CEEEEEEcCCcEEEEEecCcccCCCCCCcc
Q 000673 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAP-----YAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1358)
Q Consensus 481 t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p-----~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~ 555 (1358)
++-+.++++||..... ....|+- .+.|++-+ .+| ..++.|..|-.|+++
T Consensus 120 sSFDhtlKVWDtnTlQ----~a~~F~m-e~~VYsha------mSp~a~sHcLiA~gtr~~~VrLC--------------- 173 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQ----EAVDFKM-EGKVYSHA------MSPMAMSHCLIAAGTRDVQVRLC--------------- 173 (397)
T ss_pred ccccceEEEeecccce----eeEEeec-Cceeehhh------cChhhhcceEEEEecCCCcEEEE---------------
Confidence 3445678888876542 2222221 23344422 222 137888888889884
Q ss_pred ccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC-cEEEEE--------------ecC
Q 000673 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVM--------------HHH 620 (1358)
Q Consensus 556 d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg-~~l~~~--------------~~H 620 (1358)
|+++|.+.++|.||++.|.++.|+| .. +-+|+|||.|+.||+||++.. .|...+ ..|
T Consensus 174 Di~SGs~sH~LsGHr~~vlaV~Wsp----~~----e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah 245 (397)
T KOG4283|consen 174 DIASGSFSHTLSGHRDGVLAVEWSP----SS----EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH 245 (397)
T ss_pred eccCCcceeeeccccCceEEEEecc----Cc----eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc
Confidence 4678889999999999999999995 22 368999999999999999754 343333 356
Q ss_pred CCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEE-EEec--CCCCCcEEEEE---cCCCCEEEEEecCCccc
Q 000673 621 VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE-RMFP--GHPNYPAKVVW---DCPRGYIACLCRDHSRT 694 (1358)
Q Consensus 621 ~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~-~~l~--gH~~~V~~v~~---spd~~~L~~g~~d~sgs 694 (1358)
.+.|+.++|..+ +.++++++.|..+++|+..+|+-. +.+- .|... ...++ +-+...++ +- -
T Consensus 246 ~gkvngla~tSd------~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~~s~vfv-~~-----p 312 (397)
T KOG4283|consen 246 YGKVNGLAWTSD------ARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSMDSDVFV-LF-----P 312 (397)
T ss_pred cceeeeeeeccc------chhhhhccCccceEEeecccCccccccccccccccc-ccceEEEeecccceEE-EE-----e
Confidence 788999999999 899999999999999999988642 2221 12211 11222 22222222 11 1
Q ss_pred cCCCCeEEEEECCCCeEEEEEeCCCCceEEEee
Q 000673 695 SDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 727 (1358)
Q Consensus 695 sD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~ 727 (1358)
. |+++++..+-+|..++.+.+|-..+.+..+
T Consensus 313 ~--~~~lall~~~sgs~ir~l~~h~k~i~c~~~ 343 (397)
T KOG4283|consen 313 N--DGSLALLNLLEGSFVRRLSTHLKRINCAAY 343 (397)
T ss_pred c--CCeEEEEEccCceEEEeeecccceeeEEee
Confidence 2 479999999999999999999666655433
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=5.2e-12 Score=137.58 Aligned_cols=208 Identities=12% Similarity=0.143 Sum_probs=148.6
Q ss_pred ccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCC
Q 000673 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1358)
Q Consensus 506 ~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~ 585 (1358)
.+|.+-|.++.|...+. .+++++.|+++.||++.. +-.+..+....+.|.+.|..+.|.+ |
T Consensus 10 s~h~DlihdVs~D~~GR----RmAtCSsDq~vkI~d~~~-----------~s~~W~~Ts~Wrah~~Si~rV~WAh----P 70 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR----RMATCSSDQTVKIWDSTS-----------DSGTWSCTSSWRAHDGSIWRVVWAH----P 70 (361)
T ss_pred cCCcceeeeeeecccCc----eeeeccCCCcEEEEeccC-----------CCCceEEeeeEEecCCcEEEEEecC----c
Confidence 46777777766433333 499999999999977642 2234456778899999999999953 2
Q ss_pred CCCccCcEEEEEeCCCcEEEEeCC---------CCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEEC
Q 000673 586 KGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1358)
Q Consensus 586 dg~~~~~~L~Sgs~D~tI~lWDl~---------sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl 656 (1358)
. +.+.++++|.|+++.||.=. ......++....+.|+.+.|.|... |-.+++++.||++|||+.
T Consensus 71 E---fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl----GLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 71 E---FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL----GLKLAAASADGILRIYEA 143 (361)
T ss_pred c---ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc----ceEEEEeccCcEEEEEec
Confidence 1 34999999999999999752 1124556777888999999999843 778999999999999975
Q ss_pred CCC-------------------------------------------------------------------cEEEEecCCC
Q 000673 657 ETL-------------------------------------------------------------------RVERMFPGHP 669 (1358)
Q Consensus 657 ~~~-------------------------------------------------------------------~~~~~l~gH~ 669 (1358)
-.. ..+..+++|.
T Consensus 144 ~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~ 223 (361)
T KOG2445|consen 144 PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT 223 (361)
T ss_pred CCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence 321 1123445788
Q ss_pred CCcEEEEEcCCC----CEEEEEecCCccccCCCCeEEEEECCCC--------------------eEEEEEeCCCCceEEE
Q 000673 670 NYPAKVVWDCPR----GYIACLCRDHSRTSDAVDVLFIWDVKTG--------------------ARERVLRGTASHSMFD 725 (1358)
Q Consensus 670 ~~V~~v~~spd~----~~L~~g~~d~sgssD~DgtV~vWd~~tg--------------------~~~~~l~GH~~~v~~~ 725 (1358)
.+|+.++|.|+- ..|+++|. || |+||.++.. +.+..+.+|..+|..+
T Consensus 224 dpI~di~wAPn~Gr~y~~lAvA~k--------Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv 294 (361)
T KOG2445|consen 224 DPIRDISWAPNIGRSYHLLAVATK--------DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRV 294 (361)
T ss_pred CcceeeeeccccCCceeeEEEeec--------Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEE
Confidence 889999999863 35665443 47 999998731 3456678999999877
Q ss_pred eeecccccceeecceecCcccccCCccccccCCcEEEEeC
Q 000673 726 HFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQI 765 (1358)
Q Consensus 726 ~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~ 765 (1358)
.|. .+|++ +. +...||.+|.|..
T Consensus 295 ~wN-------mtGti-----Ls-----StGdDG~VRLWka 317 (361)
T KOG2445|consen 295 RWN-------MTGTI-----LS-----STGDDGCVRLWKA 317 (361)
T ss_pred EEe-------eeeeE-----Ee-----ecCCCceeeehhh
Confidence 665 34442 22 3345999999964
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=8.8e-13 Score=149.67 Aligned_cols=165 Identities=14% Similarity=0.147 Sum_probs=132.1
Q ss_pred ccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCC
Q 000673 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1358)
Q Consensus 506 ~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~ 585 (1358)
++|+..|-+ ++.+....+-|++|+.|.+|.+ ||+.+++|..++..|.+.|.++.||| .
T Consensus 240 ~gHTdavl~---Ls~n~~~~nVLaSgsaD~TV~l---------------WD~~~g~p~~s~~~~~k~Vq~l~wh~----~ 297 (463)
T KOG0270|consen 240 SGHTDAVLA---LSWNRNFRNVLASGSADKTVKL---------------WDVDTGKPKSSITHHGKKVQTLEWHP----Y 297 (463)
T ss_pred ccchHHHHH---HHhccccceeEEecCCCceEEE---------------EEcCCCCcceehhhcCCceeEEEecC----C
Confidence 467776655 3334444456999999999999 55779999999999999999999996 3
Q ss_pred CCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC-cEEEE
Q 000673 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERM 664 (1358)
Q Consensus 586 dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~-~~~~~ 664 (1358)
.. .+|++||.|++|.+.|.+........-...+.|..++|.|.. ...++++..||+|+-+|+|.. +++.+
T Consensus 298 ~p----~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s-----e~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 298 EP----SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS-----ENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred Cc----eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC-----ceeEEEecCCceEEeeecCCCCCceeE
Confidence 33 899999999999999998543333322346789999999884 467888999999999999975 99999
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 665 l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
+..|...|.++++++.-..+++ ++++ |++|++|++..
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~-----t~s~--d~~Vklw~~~~ 405 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLS-----TAST--DKVVKLWKFDV 405 (463)
T ss_pred EEeccCCcceEEecCCCCccee-----eccc--cceEEEEeecC
Confidence 9999999999999987766553 2233 59999999864
No 147
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.45 E-value=1.6e-10 Score=133.12 Aligned_cols=137 Identities=13% Similarity=0.113 Sum_probs=99.9
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEE-EEEeCCCcEEEEeCCCCcEEEEEecCCC-------cEEEEEe
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVL-VSGSMDCSIRIWDLGSGNLITVMHHHVA-------PVRQIIL 629 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L-~Sgs~D~tI~lWDl~sg~~l~~~~~H~~-------~V~~l~~ 629 (1358)
.+++....+. ....+.++.|+ ||| ++| +++..|+.|++||+.+++.+..+..+.. ....++|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~~~s-----~dg----~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 145 KTYEIVDNVL-VDQRPRFAEFT-----ADG----KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred CCCeEEEEEE-cCCCccEEEEC-----CCC----CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE
Confidence 3444443332 22345778887 777 666 5666799999999999998877654321 2346889
Q ss_pred CCCCCCCCCCCeE-EEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 630 SPPQTEHPWSDCF-LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 630 spd~~~~~~g~~l-~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
+|+ ++.+ ++.+.++.+.+||+++++.+..+. +...+.+++|+|++++|+++. ..++.|+|||+++
T Consensus 215 s~d------g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~-------~~~~~i~v~d~~~ 280 (300)
T TIGR03866 215 TKD------GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTN-------GVSNDVSVIDVAA 280 (300)
T ss_pred CCC------CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEc-------CCCCeEEEEECCC
Confidence 999 7764 445567789999999998876654 334789999999999998532 2258999999999
Q ss_pred CeEEEEEeCC
Q 000673 709 GARERVLRGT 718 (1358)
Q Consensus 709 g~~~~~l~GH 718 (1358)
+++++.+...
T Consensus 281 ~~~~~~~~~~ 290 (300)
T TIGR03866 281 LKVIKSIKVG 290 (300)
T ss_pred CcEEEEEEcc
Confidence 9999988754
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.43 E-value=1.5e-12 Score=148.40 Aligned_cols=215 Identities=14% Similarity=0.158 Sum_probs=158.8
Q ss_pred cccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccc
Q 000673 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1358)
Q Consensus 477 ~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d 556 (1358)
.+.....-+++.+||+..+.+.... .+.......+++++.++.+. .++.+.||.|.||+
T Consensus 479 tLivGGeastlsiWDLAapTprika--eltssapaCyALa~spDakv----cFsccsdGnI~vwD--------------- 537 (705)
T KOG0639|consen 479 TLIVGGEASTLSIWDLAAPTPRIKA--ELTSSAPACYALAISPDAKV----CFSCCSDGNIAVWD--------------- 537 (705)
T ss_pred eEEeccccceeeeeeccCCCcchhh--hcCCcchhhhhhhcCCccce----eeeeccCCcEEEEE---------------
Confidence 3455566788999999876554321 12222234455554444444 67778999999944
Q ss_pred cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCC
Q 000673 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1358)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~ 636 (1358)
+.....++.|.||++.+.|+.++ +|| ..|-||+-|.+||.||++.++.+... .....|.++..+|.
T Consensus 538 Lhnq~~VrqfqGhtDGascIdis-----~dG----tklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~---- 603 (705)
T KOG0639|consen 538 LHNQTLVRQFQGHTDGASCIDIS-----KDG----TKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPT---- 603 (705)
T ss_pred cccceeeecccCCCCCceeEEec-----CCC----ceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCC----
Confidence 55566889999999999999997 888 99999999999999999998766543 23578999999999
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 637 PWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 637 ~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
+++++.|-..+.+.+...... ....+.-|.+-|.+++|.+-|+++++ .++|+.+..|...-|..+-..+
T Consensus 604 --~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvS--------tGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 604 --GDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVS--------TGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred --ccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeee--------cCchhhhhhccCccccceeecc
Confidence 899999999999999887643 34566778889999999999999994 4456899999998888776654
Q ss_pred CCCCceEEEeeecccccceeecc
Q 000673 717 GTASHSMFDHFCKGISMNSISGS 739 (1358)
Q Consensus 717 GH~~~v~~~~~~~~~~~~~~sGs 739 (1358)
. .+.|++...+ .....+++|+
T Consensus 673 E-~SsVlsCDIS-~ddkyIVTGS 693 (705)
T KOG0639|consen 673 E-SSSVLSCDIS-FDDKYIVTGS 693 (705)
T ss_pred c-cCcceeeeec-cCceEEEecC
Confidence 3 3456533222 1223366665
No 149
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.1e-11 Score=151.11 Aligned_cols=227 Identities=18% Similarity=0.206 Sum_probs=168.0
Q ss_pred ccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCC
Q 000673 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1358)
Q Consensus 480 ~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t 559 (1358)
....++.++.|+...... ....+.-++..|++...... .+++|+.+++|.++.|+ +
T Consensus 30 tcgsdg~ir~~~~~sd~e---~P~ti~~~g~~v~~ia~~s~------~f~~~s~~~tv~~y~fp---------------s 85 (933)
T KOG1274|consen 30 TCGSDGDIRKWKTNSDEE---EPETIDISGELVSSIACYSN------HFLTGSEQNTVLRYKFP---------------S 85 (933)
T ss_pred EecCCCceEEeecCCccc---CCchhhccCceeEEEeeccc------ceEEeeccceEEEeeCC---------------C
Confidence 344456677777654411 01111226677777552222 38999999999998776 2
Q ss_pred ceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCC
Q 000673 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1358)
Q Consensus 560 ~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g 639 (1358)
++....|.--+-++++++|+ -+| ++++.||.|..|++-++........+.+|.++|.+|.|+|. +
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~-----g~g----~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~------~ 150 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVS-----GSG----KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK------G 150 (933)
T ss_pred CCccceeeeeeccceEEEEe-----cCC----cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCC------C
Confidence 22222333346788999997 677 99999999999999999999999999999999999999999 8
Q ss_pred CeEEEEeCCCcEEEEECCCCcEEEEecCC--------CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeE
Q 000673 640 DCFLSVGEDFSVALASLETLRVERMFPGH--------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1358)
Q Consensus 640 ~~l~S~s~D~tV~lwdl~~~~~~~~l~gH--------~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~ 711 (1358)
+++|+.+.||+|++||++++.+..++.+- ...+..++|+|++..+++-+. |+.|++++..+++.
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~--------d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV--------DNTVKVYSRKGWEL 222 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc--------CCeEEEEccCCcee
Confidence 99999999999999999999887776542 224568999999777775443 38999999999998
Q ss_pred EEEEeC--CCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCccc
Q 000673 712 ERVLRG--TASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1358)
Q Consensus 712 ~~~l~G--H~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~~ 770 (1358)
...+.+ |.+.+..+.|.+ +|.+..++.+ |+.|-+|+...++.
T Consensus 223 ~f~Lr~~~~ss~~~~~~wsP------------nG~YiAAs~~-----~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 223 QFKLRDKLSSSKFSDLQWSP------------NGKYIAASTL-----DGQILVWNVDTHER 266 (933)
T ss_pred heeecccccccceEEEEEcC------------CCcEEeeecc-----CCcEEEEecccchh
Confidence 888875 333344444543 4566666666 99999999875443
No 150
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.41 E-value=9.9e-13 Score=149.92 Aligned_cols=226 Identities=14% Similarity=0.115 Sum_probs=162.1
Q ss_pred ccccCCccccccccCCCCCC-CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccC
Q 000673 480 LTFCQDTVPRSEHVDSRQAG-DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVN 558 (1358)
Q Consensus 480 ~t~~~s~i~~W~~~~~~~~~-~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~ 558 (1358)
.+...+-+++|++..+.... ..........+.+.++.+.++..- |++|++-.++.||++. .+
T Consensus 435 yTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrt----LivGGeastlsiWDLA-------------ap 497 (705)
T KOG0639|consen 435 YTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRT----LIVGGEASTLSIWDLA-------------AP 497 (705)
T ss_pred EecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCce----EEeccccceeeeeecc-------------CC
Confidence 34456678999986542211 111111223456777666666655 9999998899995543 12
Q ss_pred CceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCC
Q 000673 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1358)
Q Consensus 559 t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~ 638 (1358)
+......|..-.-...+|+.+ ||. ++.+++..||.|.|||+.....++.|.||++.+.||.+++|
T Consensus 498 TprikaeltssapaCyALa~s-----pDa----kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d------ 562 (705)
T KOG0639|consen 498 TPRIKAELTSSAPACYALAIS-----PDA----KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD------ 562 (705)
T ss_pred CcchhhhcCCcchhhhhhhcC-----Ccc----ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC------
Confidence 222223333333345567776 787 99999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCC
Q 000673 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1358)
Q Consensus 639 g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH 718 (1358)
|..|-+|+-|++||.||+++++.++... ..+.|.++-.+|++.++++|-.+ +.|-|-.. ++.....+.-|
T Consensus 563 GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMen--------s~vevlh~-skp~kyqlhlh 632 (705)
T KOG0639|consen 563 GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMEN--------SNVEVLHT-SKPEKYQLHLH 632 (705)
T ss_pred CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeeccc--------CcEEEEec-CCccceeeccc
Confidence 8999999999999999999998765432 24579999999999999987643 55555554 35555677889
Q ss_pred CCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEe
Q 000673 719 ASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQ 764 (1358)
Q Consensus 719 ~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~ 764 (1358)
.+-|+++.|.. +|.|.+|.. .|+-+-.|.
T Consensus 633 eScVLSlKFa~------------cGkwfvStG-----kDnlLnawr 661 (705)
T KOG0639|consen 633 ESCVLSLKFAY------------CGKWFVSTG-----KDNLLNAWR 661 (705)
T ss_pred ccEEEEEEecc------------cCceeeecC-----chhhhhhcc
Confidence 88888887763 445555443 488888884
No 151
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.4e-11 Score=128.32 Aligned_cols=190 Identities=13% Similarity=0.070 Sum_probs=134.9
Q ss_pred ceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEec
Q 000673 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1358)
Q Consensus 501 ~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp 580 (1358)
....++.|.++++.+.+- ..+ |++| .||.|+-|.|........+-.+|..... .++=.----.|+++...|
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~----Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P--~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDF----LLSG-GDGLVYGWEWNEEEESLATKRLWEVKIP--MQVDAVEVPEINAMWLDP 124 (325)
T ss_pred ceeeccccCCCeeeeeee--hhh----eeec-cCceEEEeeehhhhhhccchhhhhhcCc--cccCcccCCccceeEecc
Confidence 445568999999997743 222 5555 5699999999866554455555644321 111001124578887763
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc
Q 000673 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1358)
Q Consensus 581 ~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~ 660 (1358)
.. +-++.++.|+.+.-||+++|+..+.|+||++.|.++.--.. ...++||+.||++|+||+++++
T Consensus 125 -----~e----nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~------~~qilsG~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 125 -----SE----NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA------NGQILSGAEDGTVRVWDTKTQK 189 (325)
T ss_pred -----CC----CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc------CcceeecCCCccEEEEeccccc
Confidence 33 45666669999999999999999999999999999987443 4579999999999999999999
Q ss_pred EEEEecCC----------CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEE--eCCCCceEEE
Q 000673 661 VERMFPGH----------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL--RGTASHSMFD 725 (1358)
Q Consensus 661 ~~~~l~gH----------~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l--~GH~~~v~~~ 725 (1358)
++.++... ..+|-+++ -+.++|+||+. -.+.+|.+++.++..+| .+|...|++.
T Consensus 190 ~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG---------p~lslwhLrsse~t~vfpipa~v~~v~F~ 255 (325)
T KOG0649|consen 190 HVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG---------PKLSLWHLRSSESTCVFPIPARVHLVDFV 255 (325)
T ss_pred eeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC---------CceeEEeccCCCceEEEecccceeEeeee
Confidence 99887532 12344444 46789997653 47899999987766654 5776666544
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.39 E-value=3.3e-12 Score=140.11 Aligned_cols=101 Identities=28% Similarity=0.416 Sum_probs=90.9
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
++.|+.-|-|+|.+ +.++++...+.||.+.|+.+.++| .+ .++++|||.|.+||+|+
T Consensus 108 la~~G~~GvIrVid---------------~~~~~~~~~~~ghG~sINeik~~p----~~----~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 108 LAAGGYLGVIRVID---------------VVSGQCSKNYRGHGGSINEIKFHP----DR----PQLVLSASKDHSVRLWN 164 (385)
T ss_pred EEeecceeEEEEEe---------------cchhhhccceeccCccchhhhcCC----CC----CcEEEEecCCceEEEEe
Confidence 77777889999943 557778899999999999999996 22 38999999999999999
Q ss_pred CCCCcEEEEEe---cCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECC
Q 000673 608 LGSGNLITVMH---HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1358)
Q Consensus 608 l~sg~~l~~~~---~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~ 657 (1358)
+.+..|+..|- ||.+.|.++.|+++ |.+|+|++.|+++++|++.
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~------gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLD------GDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCC------CCeeeccCCcceEEEEecC
Confidence 99999999874 69999999999999 8999999999999999998
No 153
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=4.1e-12 Score=148.02 Aligned_cols=209 Identities=21% Similarity=0.234 Sum_probs=153.7
Q ss_pred ecccCCCcEEEEEeeccCcccCC--EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEecc
Q 000673 504 DFVHKEKIVSSSMVISESFYAPY--AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRM 581 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~--~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~ 581 (1358)
++..|...+.++. |+|. -+++++.||.|.+|.+....+ -....-+++.+|++|.++|.|+++.
T Consensus 289 tl~s~~d~ir~l~------~~~sep~lit~sed~~lk~WnLqk~~~-------s~~~~~epi~tfraH~gPVl~v~v~-- 353 (577)
T KOG0642|consen 289 TLRSHDDCIRALA------FHPSEPVLITASEDGTLKLWNLQKAKK-------SAEKDVEPILTFRAHEGPVLCVVVP-- 353 (577)
T ss_pred eeecchhhhhhhh------cCCCCCeEEEeccccchhhhhhcccCC-------ccccceeeeEEEecccCceEEEEec--
Confidence 4455666666655 4443 399999999999977632111 1223456899999999999999996
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEeCCCC----------cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcE
Q 000673 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSG----------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1358)
Q Consensus 582 ~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg----------~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV 651 (1358)
+++ +++.||+-||+|+.|++... .....+.||++.|+.+++++. .+.|++++.||++
T Consensus 354 ---~n~----~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~------~~~Llscs~DgTv 420 (577)
T KOG0642|consen 354 ---SNG----EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST------KDRLLSCSSDGTV 420 (577)
T ss_pred ---CCc----eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc------ccceeeecCCceE
Confidence 667 99999999999999965421 245678999999999999988 6789999999999
Q ss_pred EEEECCCCcE--------------------------------------------EEEec-----C--CCCCcEEEEEcCC
Q 000673 652 ALASLETLRV--------------------------------------------ERMFP-----G--HPNYPAKVVWDCP 680 (1358)
Q Consensus 652 ~lwdl~~~~~--------------------------------------------~~~l~-----g--H~~~V~~v~~spd 680 (1358)
++|+.....+ ++.+. + -...+..|.++|+
T Consensus 421 r~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~ 500 (577)
T KOG0642|consen 421 RLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT 500 (577)
T ss_pred EeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC
Confidence 9999764322 01110 0 0123667888999
Q ss_pred CCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcE
Q 000673 681 RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTF 760 (1358)
Q Consensus 681 ~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tv 760 (1358)
..+.+++. .|+.|+++|..+|.++.....|...++++.+-+ +|.++.+++ .|+++
T Consensus 501 ~~~~~~~h--------ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~------------ng~~l~s~s-----~d~sv 555 (577)
T KOG0642|consen 501 ADITFTAH--------EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP------------NGPYLMSGS-----HDGSV 555 (577)
T ss_pred CCeeEecc--------cCCceecccccccccchheeeccceecceeecC------------CCceEEeec-----CCcee
Confidence 88888433 359999999999999999999998887764432 233333333 49999
Q ss_pred EEEeC
Q 000673 761 RQSQI 765 (1358)
Q Consensus 761 r~W~~ 765 (1358)
+.|.+
T Consensus 556 ~l~kl 560 (577)
T KOG0642|consen 556 RLWKL 560 (577)
T ss_pred ehhhc
Confidence 99975
No 154
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=5.3e-12 Score=147.09 Aligned_cols=209 Identities=17% Similarity=0.178 Sum_probs=158.5
Q ss_pred ccccccCCccccccccCCCCCC----CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCC
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAG----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGA 553 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~----~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~ 553 (1358)
+...+.++++++|++.+....+ ....+|.+|.++|-|+.+...... +++|++||+|+.|+..++...+.
T Consensus 309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~----~ysgg~Dg~I~~w~~p~n~dp~d--- 381 (577)
T KOG0642|consen 309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH----CYSGGIDGTIRCWNLPPNQDPDD--- 381 (577)
T ss_pred EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE----EEeeccCceeeeeccCCCCCccc---
Confidence 4556678889999995533332 567889999999999998888887 99999999999976653332211
Q ss_pred ccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEec--------------
Q 000673 554 SLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-------------- 619 (1358)
Q Consensus 554 ~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~-------------- 619 (1358)
..| .......|.||++.|+.+++|+ .. ..|+++|.|||+++|+...... .+|..
T Consensus 382 s~d--p~vl~~~l~Ghtdavw~l~~s~-----~~----~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~s 449 (577)
T KOG0642|consen 382 SYD--PSVLSGTLLGHTDAVWLLALSS-----TK----DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTS 449 (577)
T ss_pred ccC--cchhccceeccccceeeeeecc-----cc----cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeecc
Confidence 011 1123467899999999999984 22 6799999999999998754332 11100
Q ss_pred ----C----------------------------------CCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcE
Q 000673 620 ----H----------------------------------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1358)
Q Consensus 620 ----H----------------------------------~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~ 661 (1358)
| ...++.+.++|. +....++-.|+.|+++|..+++.
T Consensus 450 s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~------~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 450 SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT------ADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC------CCeeEecccCCceeccccccccc
Confidence 0 012444555555 78899999999999999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCC
Q 000673 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1358)
Q Consensus 662 ~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~ 719 (1358)
+.....|...++++++.|+|.+|++| +. ||.|++|.+....++.....|.
T Consensus 524 l~s~~a~~~svtslai~~ng~~l~s~------s~--d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 524 LHSMVAHKDSVTSLAIDPNGPYLMSG------SH--DGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred chheeeccceecceeecCCCceEEee------cC--Cceeehhhccchheeecccccc
Confidence 99999999999999999999999953 34 3999999998888887777775
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.8e-12 Score=161.79 Aligned_cols=196 Identities=17% Similarity=0.207 Sum_probs=151.7
Q ss_pred CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEe
Q 000673 500 DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAH 579 (1358)
Q Consensus 500 ~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~s 579 (1358)
.....+..|++.|..+.| +.+.++-+++|..||+|.||+.+........+ -..-.+.|.||+|+
T Consensus 107 ~~la~~~~h~G~V~gLDf---N~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-------------~~~~~~eI~~lsWN 170 (1049)
T KOG0307|consen 107 EVLATKSKHTGPVLGLDF---NPFQGNLLASGADDGEILIWDLNKPETPFTPG-------------SQAPPSEIKCLSWN 170 (1049)
T ss_pred HHHhhhcccCCceeeeec---cccCCceeeccCCCCcEEEeccCCcCCCCCCC-------------CCCCcccceEeccc
Confidence 344556789999999664 33444459999999999997765433221110 01135789999998
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCC--cEEEEEeCCCCCCCCCCCeEEEEeCC---CcEEEE
Q 000673 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA--PVRQIILSPPQTEHPWSDCFLSVGED---FSVALA 654 (1358)
Q Consensus 580 p~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~--~V~~l~~spd~~~~~~g~~l~S~s~D---~tV~lw 654 (1358)
|...++|+||+.++++-|||++..+.+-.+..|.+ .+..+.|+|++. ..++.++.| -.|.+|
T Consensus 171 --------rkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-----Tql~~As~dd~~PviqlW 237 (1049)
T KOG0307|consen 171 --------RKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-----TQLLVASGDDSAPVIQLW 237 (1049)
T ss_pred --------hhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-----eeeeeecCCCCCceeEee
Confidence 55668999999999999999999988888887765 467899999953 456666554 468999
Q ss_pred ECCC-CcEEEEecCCCCCcEEEEEcCCC-CEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccc
Q 000673 655 SLET-LRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGIS 732 (1358)
Q Consensus 655 dl~~-~~~~~~l~gH~~~V~~v~~spd~-~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~ 732 (1358)
|+|. ..+++.+.+|...|.++.|++.+ .+|+ ++.+|+.|.+|+.+||+.+..+....+...-+.||+...
T Consensus 238 DlR~assP~k~~~~H~~GilslsWc~~D~~lll--------SsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 238 DLRFASSPLKILEGHQRGILSLSWCPQDPRLLL--------SSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNP 309 (1049)
T ss_pred cccccCCchhhhcccccceeeeccCCCCchhhh--------cccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCc
Confidence 9985 45788899999999999999988 5555 455679999999999999999988778888888998654
No 156
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.36 E-value=1.5e-11 Score=131.40 Aligned_cols=121 Identities=18% Similarity=0.199 Sum_probs=91.2
Q ss_pred ccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCC
Q 000673 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1358)
Q Consensus 506 ~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~ 585 (1358)
..|.++|.++.|.+.-.. =+.|+.+..+..+.++ |+....+....+.-..-.|..+.+- |
T Consensus 202 ash~qpvlsldyas~~~r----Gisgga~dkl~~~Sl~-----------~s~gslq~~~e~~lknpGv~gvrIR-----p 261 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDR----GISGGADDKLVMYSLN-----------HSTGSLQIRKEITLKNPGVSGVRIR-----P 261 (323)
T ss_pred hhccCcceeeeechhhcC----CcCCCccccceeeeec-----------cccCcccccceEEecCCCccceEEc-----c
Confidence 457788888775433222 4667777777776554 2221111112222224457777775 7
Q ss_pred CCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEEC
Q 000673 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1358)
Q Consensus 586 dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl 656 (1358)
|+ ++++|+++|+.||+|+.+++.++..++.|.+.|++++|+|+ ...+|+++.|..|.+|++
T Consensus 262 D~----KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd------~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 262 DG----KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD------CELMAAASKDARISLWKL 322 (323)
T ss_pred CC----cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC------CchhhhccCCceEEeeec
Confidence 77 99999999999999999999999999999999999999999 789999999999999986
No 157
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=3.3e-10 Score=124.17 Aligned_cols=266 Identities=14% Similarity=0.135 Sum_probs=174.1
Q ss_pred ccCceEEEEecCCcEEEEEecCce--EEeecCCCcccceeeeeecceeeecCCCCCceEEEEeecccchhcccccccccc
Q 000673 278 VEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCT 355 (1358)
Q Consensus 278 ~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~ 355 (1358)
...|..|.|++.++.++..++|++ +|+.- .......+ ..+.++..-.|. +..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~-~~~l~~~~------------~~~~plL~c~F~-d~~------------ 66 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVP-ANSLKLKF------------KHGAPLLDCAFA-DES------------ 66 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEecc-chhhhhhe------------ecCCceeeeecc-CCc------------
Confidence 456789999999999999999988 78872 11121222 112344555555 333
Q ss_pred ccceEEEEEecCCcEEEEEEccCCccccCCCccccCCccCCCCCceeEeEeeccceEEEeeeecccccccccccCeEEEE
Q 000673 356 TFYENFAVWDNRGSAIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVW 435 (1358)
Q Consensus 356 ~~~~~v~vws~dG~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vw 435 (1358)
++.+.+.||.+++|++..++.. .+ ..+...+..+.+....+.+++. .|+..|++|
T Consensus 67 ----~~~~G~~dg~vr~~Dln~~~~~-------~i---gth~~~i~ci~~~~~~~~vIsg-----------sWD~~ik~w 121 (323)
T KOG1036|consen 67 ----TIVTGGLDGQVRRYDLNTGNED-------QI---GTHDEGIRCIEYSYEVGCVISG-----------SWDKTIKFW 121 (323)
T ss_pred ----eEEEeccCceEEEEEecCCcce-------ee---ccCCCceEEEEeeccCCeEEEc-----------ccCccEEEE
Confidence 7899999999999999874221 11 1222333344444333333322 233345555
Q ss_pred ecCCCCCCCCcceeEEeecCccceeeeccccccCCCCcccccccccccCCccccccccCCCCCCCceeecccCCCcEEEE
Q 000673 436 SLSQKHSGPGKQCRMVGEGFSFVDWVNNSTFLDENEGSCTGKSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSS 515 (1358)
Q Consensus 436 s~~~~~~~~~~~~~~l~~g~~~g~w~~~~~~~~~~~g~~i~~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~ 515 (1358)
+ ..+....+ . ...+.+|.++
T Consensus 122 D-------------------------------------------------------~R~~~~~~----~-~d~~kkVy~~ 141 (323)
T KOG1036|consen 122 D-------------------------------------------------------PRNKVVVG----T-FDQGKKVYCM 141 (323)
T ss_pred e-------------------------------------------------------cccccccc----c-cccCceEEEE
Confidence 3 32211110 0 0112367775
Q ss_pred EeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEE
Q 000673 516 MVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLV 595 (1358)
Q Consensus 516 ~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~ 595 (1358)
. ...+.|+.|+.|..+.+|+....... . ...-.+-+-.+.|+++. |++ .-.+
T Consensus 142 ~------v~g~~LvVg~~~r~v~iyDLRn~~~~--------~-----q~reS~lkyqtR~v~~~-----pn~----eGy~ 193 (323)
T KOG1036|consen 142 D------VSGNRLVVGTSDRKVLIYDLRNLDEP--------F-----QRRESSLKYQTRCVALV-----PNG----EGYV 193 (323)
T ss_pred e------ccCCEEEEeecCceEEEEEcccccch--------h-----hhccccceeEEEEEEEe-----cCC----CceE
Confidence 4 23334999999999999665432211 0 00111224568899987 544 5688
Q ss_pred EEeCCCcEEEEeCCCC----cEEEEEecCC---------CcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEE
Q 000673 596 SGSMDCSIRIWDLGSG----NLITVMHHHV---------APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE 662 (1358)
Q Consensus 596 Sgs~D~tI~lWDl~sg----~~l~~~~~H~---------~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~ 662 (1358)
.+|-||.|-+=.++.. +....|+.|. -||++++|+|- -+.|+||+.||.|.+||+.+.+.+
T Consensus 194 ~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~------~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 194 VSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI------HGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred EEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc------cceEEecCCCceEEEccCcchhhh
Confidence 8999999988776655 4456788885 38999999998 689999999999999999999999
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEe
Q 000673 663 RMFPGHPNYPAKVVWDCPRGYIACLC 688 (1358)
Q Consensus 663 ~~l~gH~~~V~~v~~spd~~~L~~g~ 688 (1358)
..|.+-...|.+++|+.+|..|++++
T Consensus 268 ~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 268 KQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred hhccCCCCceEEEEeccCCCeEEEEe
Confidence 99988877899999999999999865
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=5.5e-11 Score=138.87 Aligned_cols=143 Identities=15% Similarity=0.223 Sum_probs=109.3
Q ss_pred ccCCE--EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCC
Q 000673 523 YAPYA--IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1358)
Q Consensus 523 ~~p~~--lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D 600 (1358)
|+|.+ ++++ ....|+|+++. .++.++.|..-...|..++.| |.| ..|+.|+.|
T Consensus 574 FHPs~p~lfVa-Tq~~vRiYdL~---------------kqelvKkL~tg~kwiS~msih-----p~G----Dnli~gs~d 628 (733)
T KOG0650|consen 574 FHPSKPYLFVA-TQRSVRIYDLS---------------KQELVKKLLTGSKWISSMSIH-----PNG----DNLILGSYD 628 (733)
T ss_pred ecCCCceEEEE-eccceEEEehh---------------HHHHHHHHhcCCeeeeeeeec-----CCC----CeEEEecCC
Confidence 44442 5555 44578885543 233444554456678899998 777 889999999
Q ss_pred CcEEEEeCCC-CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECC------CC---cEEEEecCCCC
Q 000673 601 CSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE------TL---RVERMFPGHPN 670 (1358)
Q Consensus 601 ~tI~lWDl~s-g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~------~~---~~~~~l~gH~~ 670 (1358)
+.++.+|++- .++.+++..|...|++++|++. =.+||+|+.|+++.++.-. .. -++..++||..
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r------yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR------YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccc------cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 9999999974 4677889999999999999988 5799999999999988532 11 35678899965
Q ss_pred C----cEEEEEcCCCCEEEEEecCCccccCCCCeEEEE
Q 000673 671 Y----PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1358)
Q Consensus 671 ~----V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vW 704 (1358)
. |..+.|||...+|.++ +.||+||+|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsA--------GAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSA--------GADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEec--------CCCceEEee
Confidence 4 7888999999999943 334999998
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.34 E-value=1.8e-11 Score=144.05 Aligned_cols=212 Identities=15% Similarity=0.172 Sum_probs=144.9
Q ss_pred ecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEE--EecCCCCEEEEEEecc
Q 000673 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY--FLGHTGAVLCLAAHRM 581 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~--l~gH~~~V~~l~~sp~ 581 (1358)
.+..|-+.|..+..++... .|+.++.|.+|+. ||+++.++... +.||++.|.+++|+|
T Consensus 95 ~~~aH~nAifDl~wapge~----~lVsasGDsT~r~---------------Wdvk~s~l~G~~~~~GH~~SvkS~cf~~- 154 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGES----LLVSASGDSTIRP---------------WDVKTSRLVGGRLNLGHTGSVKSECFMP- 154 (720)
T ss_pred ccccccceeEeeccCCCce----eEEEccCCceeee---------------eeeccceeecceeecccccccchhhhcc-
Confidence 3467888888877444333 3899999999999 44556555555 899999999999985
Q ss_pred ccCCCCCccCcEEEEEeCCCcEEEEeCCCCc---------------------------EEEEEecCCCcEEE---EEeCC
Q 000673 582 VGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN---------------------------LITVMHHHVAPVRQ---IILSP 631 (1358)
Q Consensus 582 ~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~---------------------------~l~~~~~H~~~V~~---l~~sp 631 (1358)
.| ...+++|+.||.|.|||++-.. .++....|...|.+ +.+..
T Consensus 155 ---~n----~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk 227 (720)
T KOG0321|consen 155 ---TN----PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK 227 (720)
T ss_pred ---CC----CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe
Confidence 22 3899999999999999986321 12233445444544 44555
Q ss_pred CCCCCCCCCeEEEEeC-CCcEEEEECCCCcEE--------EEecCC---CCCcEEEEEcCCCCEEEEEecCCccccCCCC
Q 000673 632 PQTEHPWSDCFLSVGE-DFSVALASLETLRVE--------RMFPGH---PNYPAKVVWDCPRGYIACLCRDHSRTSDAVD 699 (1358)
Q Consensus 632 d~~~~~~g~~l~S~s~-D~tV~lwdl~~~~~~--------~~l~gH---~~~V~~v~~spd~~~L~~g~~d~sgssD~Dg 699 (1358)
| ...|++++. |+.|++||+++..+. ..++.| ...+.++..+..|.+|...|. |+
T Consensus 228 D------e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt--------D~ 293 (720)
T KOG0321|consen 228 D------ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT--------DN 293 (720)
T ss_pred c------cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec--------CC
Confidence 5 578999888 999999999976543 223334 234677888888999996554 38
Q ss_pred eEEEEECCCC--eEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCcccc
Q 000673 700 VLFIWDVKTG--ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERG 771 (1358)
Q Consensus 700 tV~vWd~~tg--~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~~~ 771 (1358)
+||.|++.+- ..+..+.||...-..+.-|. ++ .+.+++|++. |....+|.++..+..
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~l--Sp--------d~~~l~SgSs-----d~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSEL--SP--------DDCSLLSGSS-----DEQAYIWVVSSPEAP 352 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeec--CC--------CCceEeccCC-----CcceeeeeecCccCC
Confidence 9999999762 35566677764443332221 11 2344455555 889999988766543
No 160
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.2e-10 Score=127.11 Aligned_cols=260 Identities=13% Similarity=0.198 Sum_probs=169.1
Q ss_pred CCCCCceeEeEeeccceEEEeeeecccccccccccCeEEEEecCCCCCCC-CcceeEEeecCccce--eeeccccccCCC
Q 000673 395 YPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGP-GKQCRMVGEGFSFVD--WVNNSTFLDENE 471 (1358)
Q Consensus 395 ~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~-~~~~~~l~~g~~~g~--w~~~~~~~~~~~ 471 (1358)
++.+.+..+.|.+.|..+++.+ .++. ++||.. .++.++ ......-..+++--+ |.-|++
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCS-----sDq~------vkI~d~-~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf------ 72 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCS-----SDQT------VKIWDS-TSDSGTWSCTSSWRAHDGSIWRVVWAHPEF------ 72 (361)
T ss_pred CCcceeeeeeecccCceeeecc-----CCCc------EEEEec-cCCCCceEEeeeEEecCCcEEEEEecCccc------
Confidence 4456677888888888888776 4455 999964 111111 111111122111111 333332
Q ss_pred CcccccccccccCCccccccccCCCCCC-----CceeecccCCCcEEEEEeeccCcccCC----EEEEEEcCCcEEEEEe
Q 000673 472 GSCTGKSDLTFCQDTVPRSEHVDSRQAG-----DGRDDFVHKEKIVSSSMVISESFYAPY----AIVYGFFSGEIEVIQF 542 (1358)
Q Consensus 472 g~~i~~l~~t~~~s~i~~W~~~~~~~~~-----~~~~~~~~h~~~Vts~~~i~~~~~~p~----~lv~G~~dG~I~i~~~ 542 (1358)
|. .++..+.+.++.+|+-....... .....+......|+.+. |.|. ++++.+.||.++|+..
T Consensus 73 Gq---vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~------FaP~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 73 GQ---VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVK------FAPKHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred cc---eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEE------ecchhcceEEEEeccCcEEEEEec
Confidence 21 46777889999999864221111 22344455566777765 6665 5999999999999664
Q ss_pred cCcccCCCCCCccccCCceEEEEEe-------cCCCCEEEEEEeccccCCCCCccCcEEEEEeCC-----CcEEEEeCCC
Q 000673 543 DLFERHNSPGASLKVNSHVSRQYFL-------GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD-----CSIRIWDLGS 610 (1358)
Q Consensus 543 ~~~~~~~~~~~~~d~~t~~~~~~l~-------gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D-----~tI~lWDl~s 610 (1358)
.... ..+.|.+ .+.+. .|...-.||.|+|. |-..++|+.|+.+ +.++||....
T Consensus 144 ~dp~----nLs~W~L-----q~Ei~~~~~pp~~~~~~~~CvsWn~s------r~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 144 PDPM----NLSQWTL-----QHEIQNVIDPPGKNKQPCFCVSWNPS------RMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred CCcc----ccccchh-----hhhhhhccCCcccccCcceEEeeccc------cccCceEEEEcccCCccccceEEEEecC
Confidence 3111 1122322 22222 46778899999852 3445788888877 4788997754
Q ss_pred Cc----EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC--------------------cEEEEec
Q 000673 611 GN----LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--------------------RVERMFP 666 (1358)
Q Consensus 611 g~----~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~--------------------~~~~~l~ 666 (1358)
+. .+..+.+|+++|+.|+|.|.- .+.-+.+|+++.|| |+||.++.. +.+..+.
T Consensus 209 ~~rKw~kva~L~d~~dpI~di~wAPn~--Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 209 NGRKWLKVAELPDHTDPIRDISWAPNI--GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred CcceeeeehhcCCCCCcceeeeecccc--CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 32 345678999999999999983 23346899999999 999998741 2355678
Q ss_pred CCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 667 GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 667 gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
+|.+.|+.+.|+-.|..|.+ ++| ||.||+|...
T Consensus 286 ~H~~~VWrv~wNmtGtiLsS-------tGd-DG~VRLWkan 318 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSS-------TGD-DGCVRLWKAN 318 (361)
T ss_pred CCCCceEEEEEeeeeeEEee-------cCC-Cceeeehhhh
Confidence 99999999999999999883 333 7999999763
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3e-12 Score=159.84 Aligned_cols=199 Identities=19% Similarity=0.197 Sum_probs=150.0
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
|+-|.+||.|.+|+-+.... -.....+..+.-|++.|..|.|++ .+ .++|+||+.||.|.|||
T Consensus 83 IaGG~edG~I~ly~p~~~~~---------~~~~~~la~~~~h~G~V~gLDfN~-----~q---~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIA---------NASEEVLATKSKHTGPVLGLDFNP-----FQ---GNLLASGADDGEILIWD 145 (1049)
T ss_pred eeccccCCceEEecchhhcc---------CcchHHHhhhcccCCceeeeeccc-----cC---CceeeccCCCCcEEEec
Confidence 77788999999966443211 012224566778999999999983 32 37999999999999999
Q ss_pred CCCCcEEEEEe--cCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCC--CcEEEEEcCCCCE
Q 000673 608 LGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN--YPAKVVWDCPRGY 683 (1358)
Q Consensus 608 l~sg~~l~~~~--~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~--~V~~v~~spd~~~ 683 (1358)
+...+.-..+. .-.+.|.+++|+... .+.|+|++.++.+.+||++..+++..+..|.+ .+..+.|||+...
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrkv-----qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRKV-----SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchhh-----hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 98644333331 235689999998653 57899999999999999999999888887765 3679999998754
Q ss_pred -EEEEecCCccccCCCCeEEEEECCC-CeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEE
Q 000673 684 -IACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFR 761 (1358)
Q Consensus 684 -L~~g~~d~sgssD~DgtV~vWd~~t-g~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr 761 (1358)
|++++. .|..-.|.+||+|. -..++++++|...++.+.+|... +..++++.+|+++-
T Consensus 221 ql~~As~-----dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D----------------~~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 221 QLLVASG-----DDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD----------------PRLLLSSGKDNRII 279 (1049)
T ss_pred eeeeecC-----CCCCceeEeecccccCCchhhhcccccceeeeccCCCC----------------chhhhcccCCCCee
Confidence 443332 34456899999986 46789999999999999888643 24567778899999
Q ss_pred EEeCCCcc
Q 000673 762 QSQIQNDE 769 (1358)
Q Consensus 762 ~W~~~~~~ 769 (1358)
.|+....|
T Consensus 280 ~wN~~tgE 287 (1049)
T KOG0307|consen 280 CWNPNTGE 287 (1049)
T ss_pred EecCCCce
Confidence 99876533
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.32 E-value=2e-11 Score=139.35 Aligned_cols=238 Identities=13% Similarity=0.088 Sum_probs=169.7
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
++.++.+..+.+|+.....+.........+. .-+|+..++...| +++|+..+.|.| ||+
T Consensus 50 vas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y----~~sgG~~~~Vki---------------wdl 108 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLY----EISGGQSGCVKI---------------WDL 108 (673)
T ss_pred EeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhccee----eeccCcCceeee---------------hhh
Confidence 4556667778888876653322222222222 3334333444456 899999999999 445
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecC-CCcEEEEEeCCCCCCC
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH-VAPVRQIILSPPQTEH 636 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H-~~~V~~l~~spd~~~~ 636 (1358)
+...+++.+++|+..|+++.|+ - .+.+|++++..|-|.|-.+.++..-..|... ...|+-+.|+|..
T Consensus 109 ~~kl~hr~lkdh~stvt~v~YN-----~----~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk--- 176 (673)
T KOG4378|consen 109 RAKLIHRFLKDHQSTVTYVDYN-----N----TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK--- 176 (673)
T ss_pred HHHHHhhhccCCcceeEEEEec-----C----CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc---
Confidence 5556788999999999999996 2 3489999999999999999999888888655 3456689999983
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCcEEEEe-cCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEE
Q 000673 637 PWSDCFLSVGEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1358)
Q Consensus 637 ~~g~~l~S~s~D~tV~lwdl~~~~~~~~l-~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l 715 (1358)
...|.+++++|.|.|||+....++..+ ..|..+...|+|+|....|++ +.+.|+.|++||.+......++
T Consensus 177 --r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v-------sVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 177 --RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV-------SVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred --ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE-------EecccceEEEeeccccccccee
Confidence 247788999999999999988887655 578888899999997766653 3344599999999988777776
Q ss_pred eCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCCCcccccccc
Q 000673 716 RGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDERGVAFS 775 (1358)
Q Consensus 716 ~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~~~~~~~ 775 (1358)
.-.. ....+.|.+ +|.++..+.. .|.+..+|++...++++-.
T Consensus 248 ~y~~-Plstvaf~~------------~G~~L~aG~s-----~G~~i~YD~R~~k~Pv~v~ 289 (673)
T KOG4378|consen 248 TYSH-PLSTVAFSE------------CGTYLCAGNS-----KGELIAYDMRSTKAPVAVR 289 (673)
T ss_pred eecC-CcceeeecC------------CceEEEeecC-----CceEEEEecccCCCCceEe
Confidence 5332 333343442 3344444444 7888888887666555443
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.29 E-value=7.2e-11 Score=134.63 Aligned_cols=218 Identities=17% Similarity=0.142 Sum_probs=149.9
Q ss_pred ccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccC--CC-------------
Q 000673 486 TVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERH--NS------------- 550 (1358)
Q Consensus 486 ~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~--~~------------- 550 (1358)
.|-+|+.....+...-...|.+|+++|+++.|.+.+. +++++.+.||+|+..+|...... ..
T Consensus 211 ~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~---s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~ 287 (498)
T KOG4328|consen 211 QVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT---SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDF 287 (498)
T ss_pred cEEEEecCCCCCccCceEEeccCCccccceEecCCCh---hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccc
Confidence 3566777533343455667889999999987444332 36899999999999886422111 00
Q ss_pred --------------CCCccccCCce-EEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCc---
Q 000673 551 --------------PGASLKVNSHV-SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--- 612 (1358)
Q Consensus 551 --------------~~~~~d~~t~~-~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~--- 612 (1358)
....||..++. ....+.-|...|+.++++|.+ ..+|+|||.|+|++|||++.-.
T Consensus 288 ~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~--------p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 288 SAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC--------PWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred cCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC--------chheeecccCcceeeeehhhhcCCC
Confidence 00112232222 234456688999999999743 2799999999999999997532
Q ss_pred -EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECC----CCcEEEEecCCC----CC--cEEEEEcCCC
Q 000673 613 -LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE----TLRVERMFPGHP----NY--PAKVVWDCPR 681 (1358)
Q Consensus 613 -~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~----~~~~~~~l~gH~----~~--V~~v~~spd~ 681 (1358)
++-....|...|.+..|||. +-.+++.+.|..|+|||.. .-.+..+++ |. .+ +....|.|+.
T Consensus 360 sp~lst~~HrrsV~sAyFSPs------~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~ 432 (498)
T KOG4328|consen 360 SPFLSTLPHRRSVNSAYFSPS------GGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDY 432 (498)
T ss_pred CcceecccccceeeeeEEcCC------CCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCc
Confidence 23334479999999999999 5569999999999999983 333333433 32 12 3477999999
Q ss_pred CEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCC-ceEEEeeec
Q 000673 682 GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS-HSMFDHFCK 729 (1358)
Q Consensus 682 ~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~-~v~~~~~~~ 729 (1358)
.++++|-.. ..|-|+|-..|+.+..+.+... .|.++..|.
T Consensus 433 ~li~vg~~~--------r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H 473 (498)
T KOG4328|consen 433 NLIVVGRYP--------RPIDVFDGNGGQMVCELHDPESSTIPSVNEFH 473 (498)
T ss_pred cEEEEeccC--------cceeEEcCCCCEEeeeccCccccccccceeec
Confidence 999976543 5799999999998888877664 444443443
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.26 E-value=6.1e-11 Score=135.20 Aligned_cols=209 Identities=17% Similarity=0.117 Sum_probs=149.7
Q ss_pred eecccCCCcEEEEEeeccCcccCC----EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEE
Q 000673 503 DDFVHKEKIVSSSMVISESFYAPY----AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAA 578 (1358)
Q Consensus 503 ~~~~~h~~~Vts~~~i~~~~~~p~----~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~ 578 (1358)
.....+..+|++++ |+|. .+++|...|.|-+|+|.... +...-+..+..|.++|.++.|
T Consensus 180 ~v~kv~~~Rit~l~------fHPt~~~~lva~GdK~G~VG~Wn~~~~~-----------~d~d~v~~f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 180 NVAKVTDRRITSLA------FHPTENRKLVAVGDKGGQVGLWNFGTQE-----------KDKDGVYLFTPHSGPVSGLKF 242 (498)
T ss_pred ceeEecccceEEEE------ecccCcceEEEEccCCCcEEEEecCCCC-----------CccCceEEeccCCccccceEe
Confidence 34566888999987 7775 48899999999998875211 122245678899999999999
Q ss_pred eccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEec--CCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEEC
Q 000673 579 HRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1358)
Q Consensus 579 sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~--H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl 656 (1358)
+|. + ...+.+.|.||+|++=|++.+..-..+.. -......+.|+-+ ...++.+..=|...+||+
T Consensus 243 ~P~----n----~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e------~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 243 SPA----N----TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAE------SRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred cCC----C----hhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCC------CccEEEeecccceEEEEe
Confidence 973 2 26899999999999999987643322222 3345667778777 566777776679999999
Q ss_pred CCCcE-EEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC--CeE--EEEEeCCCCceEEEeeeccc
Q 000673 657 ETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT--GAR--ERVLRGTASHSMFDHFCKGI 731 (1358)
Q Consensus 657 ~~~~~-~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t--g~~--~~~l~GH~~~v~~~~~~~~~ 731 (1358)
+++.. ...+.-|...|..|+++|-..+++ .+++.|++++|||+|. ++. .-....|+-.|.++-|++..
T Consensus 309 R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l-------aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 309 RTDGSEYENLRLHKKKITSVALNPVCPWFL-------ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred ecCCccchhhhhhhcccceeecCCCCchhe-------eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 98765 566777888999999999877655 2333459999999986 222 23334688777766565421
Q ss_pred ccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 732 SMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 732 ~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
+.++....|++||+|+.+
T Consensus 382 -----------------gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 382 -----------------GTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred -----------------CceEeeccCCceEEeecc
Confidence 124455569999999864
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.25 E-value=1.9e-10 Score=126.07 Aligned_cols=215 Identities=14% Similarity=0.170 Sum_probs=151.8
Q ss_pred cccccccCCccccccccCCCCCCCceeecc--cCCCcEE---EEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCC
Q 000673 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFV--HKEKIVS---SSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSP 551 (1358)
Q Consensus 477 ~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~--~h~~~Vt---s~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~ 551 (1358)
.++.++.+.-|++|+..+.+.. ..+. .|-..++ |+.|.++..+ |++| ....|++ |+.....
T Consensus 125 l~a~ssr~~PIh~wdaftG~lr----aSy~~ydh~de~taAhsL~Fs~DGeq----lfaG-ykrcirv--Fdt~RpG--- 190 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLR----ASYRAYDHQDEYTAAHSLQFSPDGEQ----LFAG-YKRCIRV--FDTSRPG--- 190 (406)
T ss_pred eeeeccccCceeeeeccccccc----cchhhhhhHHhhhhheeEEecCCCCe----Eeec-ccceEEE--eeccCCC---
Confidence 4667778889999998776432 2222 2444444 4444444443 7776 5568888 5432211
Q ss_pred CCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCC
Q 000673 552 GASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSP 631 (1358)
Q Consensus 552 ~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~sp 631 (1358)
+..+..+-.. +--.|..+-+.|++|+|+ +. ..++.|+.-.++-|+.-..+.++..+.+|.+.|+.+.|.+
T Consensus 191 -r~c~vy~t~~-~~k~gq~giisc~a~sP~----~~----~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 191 -RDCPVYTTVT-KGKFGQKGIISCFAFSPM----DS----KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred -CCCcchhhhh-cccccccceeeeeeccCC----CC----cceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence 1111111000 001245788999999973 33 7899999999999999889999999999999999999999
Q ss_pred CCCCCCCCCeEEEEeC-CCcEEEEECCC-CcEEEEecCCCC-CcEEEEE--cCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 632 PQTEHPWSDCFLSVGE-DFSVALASLET-LRVERMFPGHPN-YPAKVVW--DCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 632 d~~~~~~g~~l~S~s~-D~tV~lwdl~~-~~~~~~l~gH~~-~V~~v~~--spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
+ |+.|.+|+. |-.|..||++. +.++..+.+|.. .-..|.| .|++++|++ +|.||.|++||+
T Consensus 261 d------Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~Las--------G~tdG~V~vwdl 326 (406)
T KOG2919|consen 261 D------GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILAS--------GDTDGSVRVWDL 326 (406)
T ss_pred C------cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeec--------cCCCccEEEEec
Confidence 9 888888876 78899999986 456778888865 3345655 689999994 334599999999
Q ss_pred CC-CeEEEEEeCCCCceEEEeeec
Q 000673 707 KT-GARERVLRGTASHSMFDHFCK 729 (1358)
Q Consensus 707 ~t-g~~~~~l~GH~~~v~~~~~~~ 729 (1358)
++ |..+.++..|+..+..+.+.+
T Consensus 327 k~~gn~~sv~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 327 KDLGNEVSVTGNYSDTVNGVSLNP 350 (406)
T ss_pred CCCCCcccccccccccccceecCc
Confidence 98 888888888887777665554
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=7.7e-10 Score=126.44 Aligned_cols=156 Identities=16% Similarity=0.205 Sum_probs=115.3
Q ss_pred cEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCcc
Q 000673 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSF 590 (1358)
Q Consensus 511 ~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~ 590 (1358)
.|+...|.++... |+..+.+|.|++| |+....+++.+.. .+.|....+.+ +++|
T Consensus 346 ~v~~~~fsSdsk~----l~~~~~~GeV~v~---------------nl~~~~~~~rf~D-~G~v~gts~~~---S~ng--- 399 (514)
T KOG2055|consen 346 VVSDFTFSSDSKE----LLASGGTGEVYVW---------------NLRQNSCLHRFVD-DGSVHGTSLCI---SLNG--- 399 (514)
T ss_pred EEeeEEEecCCcE----EEEEcCCceEEEE---------------ecCCcceEEEEee-cCccceeeeee---cCCC---
Confidence 4455454444433 6666788999994 3555567777753 45555555443 3677
Q ss_pred CcEEEEEeCCCcEEEEeCCC------CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEe--CCCcEEEEECCCCcEE
Q 000673 591 NEVLVSGSMDCSIRIWDLGS------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG--EDFSVALASLETLRVE 662 (1358)
Q Consensus 591 ~~~L~Sgs~D~tI~lWDl~s------g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s--~D~tV~lwdl~~~~~~ 662 (1358)
.+|++||..|.|.|||..+ .+++.++..-+..|+++.|+|+ ++.+|-+| .+..+||..+.+....
T Consensus 400 -~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d------~qiLAiaS~~~knalrLVHvPS~TVF 472 (514)
T KOG2055|consen 400 -SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD------AQILAIASRVKKNALRLVHVPSCTVF 472 (514)
T ss_pred -ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc------hhhhhhhhhccccceEEEeccceeee
Confidence 8999999999999999753 4667777667788999999999 77665554 5889999999988877
Q ss_pred EEecCCC---CCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 663 RMFPGHP---NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 663 ~~l~gH~---~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
..++... +.|+|++|+|.+.||++|-. +|.|.+|.+.
T Consensus 473 sNfP~~n~~vg~vtc~aFSP~sG~lAvGNe--------~grv~l~kL~ 512 (514)
T KOG2055|consen 473 SNFPTSNTKVGHVTCMAFSPNSGYLAVGNE--------AGRVHLFKLH 512 (514)
T ss_pred ccCCCCCCcccceEEEEecCCCceEEeecC--------CCceeeEeec
Confidence 7776543 46799999999999997543 3899999874
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.6e-10 Score=122.24 Aligned_cols=167 Identities=21% Similarity=0.339 Sum_probs=122.0
Q ss_pred eccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEE
Q 000673 518 ISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG 597 (1358)
Q Consensus 518 i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sg 597 (1358)
.+..+| ++.|..+|+|.+.......+..+ ..+....+...++|.++|..++|+ +.+|+||
T Consensus 19 sp~~~~----l~agn~~G~iav~sl~sl~s~sa-----~~~gk~~iv~eqahdgpiy~~~f~-----------d~~Lls~ 78 (325)
T KOG0649|consen 19 SPSKQY----LFAGNLFGDIAVLSLKSLDSGSA-----EPPGKLKIVPEQAHDGPIYYLAFH-----------DDFLLSG 78 (325)
T ss_pred CCcceE----EEEecCCCeEEEEEehhhhcccc-----CCCCCcceeeccccCCCeeeeeee-----------hhheeec
Confidence 344455 99999999999976653322211 122233556678999999999997 2678888
Q ss_pred eCCCcEEEEeCCCCcE------E--EEEecCC-----CcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEE
Q 000673 598 SMDCSIRIWDLGSGNL------I--TVMHHHV-----APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERM 664 (1358)
Q Consensus 598 s~D~tI~lWDl~sg~~------l--~~~~~H~-----~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~ 664 (1358)
+. |.|+=|.-+.... + .....|. ..|+++.+.|. .+.++.++.|+.+.-||+++|+..+.
T Consensus 79 gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~------enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 79 GD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS------ENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred cC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC------CCcEEEecCCeEEEEEEecCCEEEEE
Confidence 75 9999887543211 1 1111232 46889988887 56677777999999999999999999
Q ss_pred ecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCC
Q 000673 665 FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1358)
Q Consensus 665 l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~ 719 (1358)
++||+.+|.++.-......+++|+ +||++||||.+|++++.++....
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~--------EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGA--------EDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred EcCCcceeeeeeecccCcceeecC--------CCccEEEEeccccceeEEecccc
Confidence 999999999999966666666433 34999999999999998876543
No 168
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.23 E-value=5.5e-12 Score=151.29 Aligned_cols=212 Identities=18% Similarity=0.229 Sum_probs=156.0
Q ss_pred ceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEec
Q 000673 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1358)
Q Consensus 501 ~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp 580 (1358)
.+..+.+|-..|+|..+.....| +++|+.|..++| |.++++.+....+||.+.|+.++.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~----Iitgsdd~lvKi---------------wS~et~~~lAs~rGhs~ditdlavs- 241 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRY----IITGSDDRLVKI---------------WSMETARCLASCRGHSGDITDLAVS- 241 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccce----EeecCccceeee---------------eeccchhhhccCCCCccccchhccc-
Confidence 34456789999999998888888 999999999999 4466888999999999999999986
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECC-CC
Q 000673 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE-TL 659 (1358)
Q Consensus 581 ~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~-~~ 659 (1358)
.+ +..++++|.|+.|++|-+..+.++..+.+|+|.|++++|+|- .+.+.||++++||.+ ..
T Consensus 242 ----~~----n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~----------~sss~dgt~~~wd~r~~~ 303 (1113)
T KOG0644|consen 242 ----SN----NTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR----------ASSSDDGTCRIWDARLEP 303 (1113)
T ss_pred ----hh----hhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc----------ccCCCCCceEeccccccc
Confidence 22 378999999999999999999999999999999999999997 277899999999987 10
Q ss_pred -------------cEEEEe----------cC------CCCCcEEEEEcCCCCEEEEEecCCc---cccCCCCeEEEEECC
Q 000673 660 -------------RVERMF----------PG------HPNYPAKVVWDCPRGYIACLCRDHS---RTSDAVDVLFIWDVK 707 (1358)
Q Consensus 660 -------------~~~~~l----------~g------H~~~V~~v~~spd~~~L~~g~~d~s---gssD~DgtV~vWd~~ 707 (1358)
..+..+ .+ .....-.++|+..+-.+++...|.. -++-.+..+.+|++.
T Consensus 304 ~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 304 RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY 383 (1113)
T ss_pred cccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecc
Confidence 000000 00 0011224455544444444332210 012224678899999
Q ss_pred CCeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 708 TGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 708 tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
+|.++..+.||.+.+..+.+.+.+.... .+...||+.-+|++-
T Consensus 384 ~g~l~H~l~ghsd~~yvLd~Hpfn~ri~----------------msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSDEVYVLDVHPFNPRIA----------------MSAGYDGSTIIWDIW 426 (1113)
T ss_pred cchhhhhhcccccceeeeeecCCCcHhh----------------hhccCCCceEeeecc
Confidence 9999999999999998887776443321 122348888888864
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.22 E-value=3.2e-10 Score=124.80 Aligned_cols=123 Identities=22% Similarity=0.246 Sum_probs=106.8
Q ss_pred CCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCC
Q 000673 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1358)
Q Consensus 569 H~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D 648 (1358)
|...-..++|+. |....+.++|.|+.-|.|++-|+.++++...+.+|.+.|+.+.++|+. .++++|+|.|
T Consensus 88 ~~Esfytcsw~y-----d~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-----~qlvls~SkD 157 (385)
T KOG1034|consen 88 HDESFYTCSWSY-----DSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-----PQLVLSASKD 157 (385)
T ss_pred CCcceEEEEEEe-----cCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC-----CcEEEEecCC
Confidence 666777788873 322235799999999999999999999999999999999999999994 4799999999
Q ss_pred CcEEEEECCCCcEEEEe---cCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 649 FSVALASLETLRVERMF---PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 649 ~tV~lwdl~~~~~~~~l---~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
.+||+||+++..|+..| .||...|.++.|+++|.+|++++ .|.++++|++.+.
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScG--------mDhslk~W~l~~~ 213 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCG--------MDHSLKLWRLNVK 213 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccC--------CcceEEEEecChh
Confidence 99999999999999887 57999999999999999999543 3599999999843
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.22 E-value=1.1e-10 Score=131.61 Aligned_cols=167 Identities=22% Similarity=0.229 Sum_probs=131.8
Q ss_pred CcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCc
Q 000673 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1358)
Q Consensus 510 ~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~ 589 (1358)
.+|.++.+-.... +.+++|+.|..|++|........ ++ -.+-+.+..|.+|+..|+++.|+ |+|
T Consensus 14 ~pv~s~dfq~n~~---~~laT~G~D~~iriW~v~r~~~~---~~---~~~V~y~s~Ls~H~~aVN~vRf~-----p~g-- 77 (434)
T KOG1009|consen 14 EPVYSVDFQKNSL---NKLATAGGDKDIRIWKVNRSEPG---GG---DMKVEYLSSLSRHTRAVNVVRFS-----PDG-- 77 (434)
T ss_pred CceEEEEeccCcc---cceecccCccceeeeeeeecCCC---CC---ceeEEEeecccCCcceeEEEEEc-----CCc--
Confidence 4566655333322 13899999999999886533221 00 01234667789999999999998 888
Q ss_pred cCcEEEEEeCCCcEEEEeCC--------C--------CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEE
Q 000673 590 FNEVLVSGSMDCSIRIWDLG--------S--------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVAL 653 (1358)
Q Consensus 590 ~~~~L~Sgs~D~tI~lWDl~--------s--------g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~l 653 (1358)
++|+||+.++.|.+|-.. + ....+++.+|...|..++|+|+ +.++++++.|+++++
T Consensus 78 --elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d------~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 78 --ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD------SNFLVSGSVDNSVRL 149 (434)
T ss_pred --CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC------CceeeeeeccceEEE
Confidence 999999999999999765 2 2345667889999999999999 899999999999999
Q ss_pred EECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 654 ASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 654 wdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
||+..|+.+..+..|...|..++|.|.++|+++- ++| ...++.++..
T Consensus 150 ~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~------s~d--r~~~~~~~~~ 196 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASK------SSD--RHPEGFSAKL 196 (434)
T ss_pred EEeccceeEeeccccccccceeecchhhhhhhhh------ccC--cccceeeeee
Confidence 9999999999999999999999999999999954 333 5666666654
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.18 E-value=5.8e-09 Score=123.12 Aligned_cols=198 Identities=24% Similarity=0.308 Sum_probs=155.4
Q ss_pred CCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEc-CCcEEEEEecCcccCCCCCCccccCCceE
Q 000673 484 QDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFF-SGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1358)
Q Consensus 484 ~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~-dG~I~i~~~~~~~~~~~~~~~~d~~t~~~ 562 (1358)
+..+.+|+... .......+..|...|..+.+.++..+ ++.+.. |+.+++|. ...+..
T Consensus 133 d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~---------------~~~~~~ 190 (466)
T COG2319 133 DGTVKLWDLST---PGKLIRTLEGHSESVTSLAFSPDGKL----LASGSSLDGTIKLWD---------------LRTGKP 190 (466)
T ss_pred CccEEEEEecC---CCeEEEEEecCcccEEEEEECCCCCE----EEecCCCCCceEEEE---------------cCCCce
Confidence 45677788765 11345567889999998876666654 777775 99999944 444667
Q ss_pred EEEEecCCCCEEEEEEeccccCCCCCccCc-EEEEEeCCCcEEEEeCCCCcEEE-EEecCCCcEEEEEeCCCCCCCCCCC
Q 000673 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNE-VLVSGSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSD 640 (1358)
Q Consensus 563 ~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~-~L~Sgs~D~tI~lWDl~sg~~l~-~~~~H~~~V~~l~~spd~~~~~~g~ 640 (1358)
...+.+|...|.+++|+ |++ . .+++++.|++|++||...+..+. .+.+|...+ -..|+|+ +.
T Consensus 191 ~~~~~~~~~~v~~~~~~-----~~~----~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------~~ 254 (466)
T COG2319 191 LSTLAGHTDPVSSLAFS-----PDG----GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------GS 254 (466)
T ss_pred EEeeccCCCceEEEEEc-----CCc----ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------CC
Confidence 88899999999999998 666 5 66666999999999999888888 799998886 4489998 67
Q ss_pred eEEEEeCCCcEEEEECCCCcE-EEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe--C
Q 000673 641 CFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR--G 717 (1358)
Q Consensus 641 ~l~S~s~D~tV~lwdl~~~~~-~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~--G 717 (1358)
.+++++.|+.+++||++.... +..+.+|...+.++.|+|++..+++++ . |+.+++||.+++....... +
T Consensus 255 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~--d~~~~~~~~~~~~~~~~~~~~~ 326 (466)
T COG2319 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS------S--DGTVRLWDLETGKLLSSLTLKG 326 (466)
T ss_pred EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee------C--CCcEEEEEcCCCceEEEeeecc
Confidence 888999999999999997665 555578888999999999999888532 2 3679999999988777766 8
Q ss_pred CCCceEEEee
Q 000673 718 TASHSMFDHF 727 (1358)
Q Consensus 718 H~~~v~~~~~ 727 (1358)
|...+..+.+
T Consensus 327 ~~~~~~~~~~ 336 (466)
T COG2319 327 HEGPVSSLSF 336 (466)
T ss_pred cCCceEEEEE
Confidence 8875555544
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.18 E-value=8.3e-10 Score=119.46 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=108.9
Q ss_pred EEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEE-ecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 529 VYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 529 v~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l-~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
+....|++++.| |+.+..+...+ ..|...|..+.|+| +- ..+|+||+.||.|++||
T Consensus 187 v~tt~d~tl~~~---------------D~RT~~~~~sI~dAHgq~vrdlDfNp-----nk---q~~lvt~gDdgyvriWD 243 (370)
T KOG1007|consen 187 VATTSDSTLQFW---------------DLRTMKKNNSIEDAHGQRVRDLDFNP-----NK---QHILVTCGDDGYVRIWD 243 (370)
T ss_pred EEEeCCCcEEEE---------------EccchhhhcchhhhhcceeeeccCCC-----Cc---eEEEEEcCCCccEEEEe
Confidence 334578888884 34444333333 57889999999984 32 47999999999999999
Q ss_pred CCC-CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC---------------------------
Q 000673 608 LGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL--------------------------- 659 (1358)
Q Consensus 608 l~s-g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~--------------------------- 659 (1358)
.+. ..++..+.+|+..|+++.|+|.. .+++++|+.|..|.||....-
T Consensus 244 ~R~tk~pv~el~~HsHWvW~VRfn~~h-----dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL 318 (370)
T KOG1007|consen 244 TRKTKFPVQELPGHSHWVWAVRFNPEH-----DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL 318 (370)
T ss_pred ccCCCccccccCCCceEEEEEEecCcc-----ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc
Confidence 975 45788999999999999999983 689999999999999975321
Q ss_pred --cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 660 --RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 660 --~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
..+.++..|...|++++|+.-+.++.. +-+-||.+-|=.+.
T Consensus 319 ~dg~l~tydehEDSVY~~aWSsadPWiFA-------SLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 319 QDGQLETYDEHEDSVYALAWSSADPWIFA-------SLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccceEEEeeccCCCeeEE-------EeccCceEEeecCC
Confidence 123466779999999999998887762 22224888776554
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.15 E-value=7.9e-09 Score=121.97 Aligned_cols=160 Identities=24% Similarity=0.403 Sum_probs=129.1
Q ss_pred EEcCCcEEEEEecCcccCCCCCCccccCC-ceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeC-CCcEEEEeC
Q 000673 531 GFFSGEIEVIQFDLFERHNSPGASLKVNS-HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDL 608 (1358)
Q Consensus 531 G~~dG~I~i~~~~~~~~~~~~~~~~d~~t-~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~-D~tI~lWDl 608 (1358)
+..|+.+.+|+.. . ......+.+|...|.++.|+ |++ ..+++++. |+++++|++
T Consensus 130 ~~~d~~~~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~ 185 (466)
T COG2319 130 SSLDGTVKLWDLS---------------TPGKLIRTLEGHSESVTSLAFS-----PDG----KLLASGSSLDGTIKLWDL 185 (466)
T ss_pred CCCCccEEEEEec---------------CCCeEEEEEecCcccEEEEEEC-----CCC----CEEEecCCCCCceEEEEc
Confidence 4448888885443 3 45778899999999999998 677 68888886 999999999
Q ss_pred CCCcEEEEEecCCCcEEEEEeCCCCCCCCCCC-eEEEEeCCCcEEEEECCCCcEEE-EecCCCCCcEEEEEcCCCCEEEE
Q 000673 609 GSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGEDFSVALASLETLRVER-MFPGHPNYPAKVVWDCPRGYIAC 686 (1358)
Q Consensus 609 ~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~-~l~S~s~D~tV~lwdl~~~~~~~-~l~gH~~~V~~v~~spd~~~L~~ 686 (1358)
..++.+..+.+|...|.+++|+|+ +. .+++++.|++|++||...+..+. .+.+|.... -..|+|++.++++
T Consensus 186 ~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 258 (466)
T COG2319 186 RTGKPLSTLAGHTDPVSSLAFSPD------GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS 258 (466)
T ss_pred CCCceEEeeccCCCceEEEEEcCC------cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE
Confidence 999999999999999999999988 66 66666999999999999888888 799998765 4489999988874
Q ss_pred EecCCccccCCCCeEEEEECCCCeE-EEEEeCCCCceEEEeeec
Q 000673 687 LCRDHSRTSDAVDVLFIWDVKTGAR-ERVLRGTASHSMFDHFCK 729 (1358)
Q Consensus 687 g~~d~sgssD~DgtV~vWd~~tg~~-~~~l~GH~~~v~~~~~~~ 729 (1358)
++. |+.+++||.+.... ...+.+|...+....+.+
T Consensus 259 ~~~--------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 259 GSS--------DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred ecC--------CCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 332 49999999987654 555578877776664443
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.14 E-value=4.5e-09 Score=115.48 Aligned_cols=132 Identities=20% Similarity=0.234 Sum_probs=107.2
Q ss_pred EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeC-CCcEEE
Q 000673 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRI 605 (1358)
Q Consensus 527 ~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~-D~tI~l 605 (1358)
.+++|+-...+-|+.++ .+.++..+-||.+.|+-|.|+ +|| +.|.||+. |-.|..
T Consensus 222 ~~a~gsY~q~~giy~~~---------------~~~pl~llggh~gGvThL~~~-----edG----n~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 222 TLAVGSYGQRVGIYNDD---------------GRRPLQLLGGHGGGVTHLQWC-----EDG----NKLFSGARKDDKILC 277 (406)
T ss_pred ceeeecccceeeeEecC---------------CCCceeeecccCCCeeeEEec-----cCc----CeecccccCCCeEEE
Confidence 47888887777776554 445788999999999999999 788 88888875 678999
Q ss_pred EeCCC-CcEEEEEecCCC-cEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCC
Q 000673 606 WDLGS-GNLITVMHHHVA-PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET-LRVERMFPGHPNYPAKVVWDCPRG 682 (1358)
Q Consensus 606 WDl~s-g~~l~~~~~H~~-~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~-~~~~~~l~gH~~~V~~v~~spd~~ 682 (1358)
||++. +.++..+..|.+ .-..|.|.-+ |.++.|++|+.||.|++||+++ +..+..+..|...++.|+++|--.
T Consensus 278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld----~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mp 353 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGDTNQRILFDLD----PKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMP 353 (406)
T ss_pred EeehhccchhhhhhhhccCccceEEEecC----CCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccc
Confidence 99974 567777888876 3344555433 2289999999999999999998 777888899999999999999988
Q ss_pred EEEE
Q 000673 683 YIAC 686 (1358)
Q Consensus 683 ~L~~ 686 (1358)
++++
T Consensus 354 ilat 357 (406)
T KOG2919|consen 354 ILAT 357 (406)
T ss_pred eeee
Confidence 8874
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.14 E-value=8.7e-10 Score=119.50 Aligned_cols=220 Identities=19% Similarity=0.183 Sum_probs=154.9
Q ss_pred cCCCcEEEEEeeccCc-ccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCC
Q 000673 507 HKEKIVSSSMVISESF-YAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1358)
Q Consensus 507 ~h~~~Vts~~~i~~~~-~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~ 585 (1358)
.|.-+++.++++++.. ..|+.|++ .+..+++|.............. +.+ ..-..|..++++..|+. -
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLAT--s~D~LRlWri~~ee~~~~~~~~--L~~----~kns~~~aPlTSFDWne----~ 161 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLAT--SSDFLRLWRIGDEESRVELQSV--LNN----NKNSEFCAPLTSFDWNE----V 161 (364)
T ss_pred CCCCCccceEecCCccccCcchhhc--ccCeEEEEeccCcCCceehhhh--hcc----CcccccCCccccccccc----C
Confidence 4677888989888774 45665555 3457888776532111000000 000 01123567899999972 3
Q ss_pred CCCccCcEEEEEeCCCcEEEEeCCCCc---EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcE-
Q 000673 586 KGWSFNEVLVSGSMDCSIRIWDLGSGN---LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV- 661 (1358)
Q Consensus 586 dg~~~~~~L~Sgs~D~tI~lWDl~sg~---~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~- 661 (1358)
| .+++.+.|-|.|..|||+++|. ....+..|..+|..++|...+ -+.|+|++.||+||++|++..+-
T Consensus 162 d----p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-----~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 162 D----PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-----RDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred C----cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-----cceEEEecCCCcEEEEEecccccc
Confidence 3 3899999999999999999874 366788999999999999863 36999999999999999997643
Q ss_pred --EEEecCCCCCcEEEEEcCCC-CEEEEEecCCccccCCCCeEEEEECCC-CeEEEEEeCCCCceEEEeeecccccceee
Q 000673 662 --ERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISMNSIS 737 (1358)
Q Consensus 662 --~~~l~gH~~~V~~v~~spd~-~~L~~g~~d~sgssD~DgtV~vWd~~t-g~~~~~l~GH~~~v~~~~~~~~~~~~~~s 737 (1358)
+..-+....+...++|++.+ +|+++-..| ...|.|-|+|. +..+..|++|.+.|..+.+.+.....+++
T Consensus 233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~d-------S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD-------SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred eEEecCCCCCCcceeeccCcCCchHHhhhhcC-------CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence 22223323467899998855 566643332 26899999997 67889999999999999887654444444
Q ss_pred cceecCcccccCCccccccCCcEEEEeCCCccc
Q 000673 738 GSVLNGNTSVSSLLLPIHEDGTFRQSQIQNDER 770 (1358)
Q Consensus 738 Gs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~~~ 770 (1358)
+ ..|...-+|++..+-+
T Consensus 306 a----------------GDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 306 A----------------GDDCQALIWDLQQMPR 322 (364)
T ss_pred c----------------CCcceEEEEecccccc
Confidence 3 4688999999875543
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.14 E-value=5.7e-10 Score=125.93 Aligned_cols=263 Identities=16% Similarity=0.167 Sum_probs=176.3
Q ss_pred cccccccCCccccccccCCCCCC-----CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCC
Q 000673 477 KSDLTFCQDTVPRSEHVDSRQAG-----DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSP 551 (1358)
Q Consensus 477 ~l~~t~~~s~i~~W~~~~~~~~~-----~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~ 551 (1358)
++++...+..+++|.+....+.+ .....+.+|+..|+.+.+.++... +++|+.+|.|.+|.-......++.
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gel----LASg~D~g~v~lWk~~~~~~~~~d 103 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGEL----LASGGDGGEVFLWKQGDVRIFDAD 103 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCe----eeecCCCceEEEEEecCcCCcccc
Confidence 35566667778888887766654 233456899999999885555544 999999999999875421111111
Q ss_pred C-CccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeC
Q 000673 552 G-ASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILS 630 (1358)
Q Consensus 552 ~-~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~s 630 (1358)
. ...+.+.....+.+.||...|..++|+ ||+ .++++|+.|.++++||+..|+.+..+..|...|..++|.
T Consensus 104 ~e~~~~ke~w~v~k~lr~h~~diydL~Ws-----~d~----~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 104 TEADLNKEKWVVKKVLRGHRDDIYDLAWS-----PDS----NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWD 174 (434)
T ss_pred chhhhCccceEEEEEecccccchhhhhcc-----CCC----ceeeeeeccceEEEEEeccceeEeeccccccccceeecc
Confidence 1 111233455678899999999999998 777 999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEEeCCCcEEEEECCCCcEE---------------------EEecCC--CCCcEEEEEcCCCCEEEEE
Q 000673 631 PPQTEHPWSDCFLSVGEDFSVALASLETLRVE---------------------RMFPGH--PNYPAKVVWDCPRGYIACL 687 (1358)
Q Consensus 631 pd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~---------------------~~l~gH--~~~V~~v~~spd~~~L~~g 687 (1358)
|. ++++++-+.|+..+..++...+.+ +.|..- ..+-..++|+|+|.+|++.
T Consensus 175 pl------~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 175 PL------NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred hh------hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 98 789999999987777766543222 111110 1234578999999999864
Q ss_pred ecCCccccCCC-----CeEEEEECCC-CeEEEEEeCCCCceEEEeeecc---cccceeecceecCcccccCCccccccCC
Q 000673 688 CRDHSRTSDAV-----DVLFIWDVKT-GARERVLRGTASHSMFDHFCKG---ISMNSISGSVLNGNTSVSSLLLPIHEDG 758 (1358)
Q Consensus 688 ~~d~sgssD~D-----gtV~vWd~~t-g~~~~~l~GH~~~v~~~~~~~~---~~~~~~sGs~l~g~~~~s~~l~~~~~D~ 758 (1358)
.. +-.-+ ++.|+++-.. .+....+.+-...++.+.||+- ..+....+-+ -.......+.++.-+
T Consensus 249 ag----~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~---~~lpyrlvfaiAt~~ 321 (434)
T KOG1009|consen 249 AG----LFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFL---FVLPYRLVFAIATKN 321 (434)
T ss_pred cc----eeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccc---cccccceEEEEeecc
Confidence 32 22111 3446665432 3455667777778888888862 1111111100 112334455555666
Q ss_pred cEEEEeC
Q 000673 759 TFRQSQI 765 (1358)
Q Consensus 759 tvr~W~~ 765 (1358)
.+-+.+.
T Consensus 322 svyvydt 328 (434)
T KOG1009|consen 322 SVYVYDT 328 (434)
T ss_pred eEEEecc
Confidence 6666654
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.14 E-value=2.6e-08 Score=117.48 Aligned_cols=276 Identities=17% Similarity=0.117 Sum_probs=163.6
Q ss_pred CCCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCccccccccccc
Q 000673 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1358)
Q Consensus 12 ~~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~ 91 (1358)
+.|..|+|.-++|-|||..|+.+ .+..+.++|.++ +..+++|.||..-|.|+++
T Consensus 8 r~~~~hci~d~afkPDGsqL~lA-Ag~rlliyD~nd-----G~llqtLKgHKDtVycVAy-------------------- 61 (1081)
T KOG1538|consen 8 RDKAEHCINDIAFKPDGTQLILA-AGSRLLVYDTSD-----GTLLQPLKGHKDTVYCVAY-------------------- 61 (1081)
T ss_pred hcccccchheeEECCCCceEEEe-cCCEEEEEeCCC-----cccccccccccceEEEEEE--------------------
Confidence 45778999999999999998876 567899999997 5678899999999999977
Q ss_pred CcccccccCCCCeEEEeeCCCeEEEEECC-CCceEEEeeCCCCCCCC-ceeeeeCCCC-CceEEEEeeccCCccc-----
Q 000673 92 SNVMGKSSLDNGALISACTDGVLCVWSRS-SGHCRRRRKLPPWVGSP-SVICTLPSNP-RYVCIGCCFIDTNQLS----- 163 (1358)
Q Consensus 92 ~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~-~G~c~~~~~l~~~~~~~-s~i~~~~~~~-~~~~l~c~~~~~~~~~----- 163 (1358)
+.||.+++||+.|..+.+|+-. .|... ++| -.|+-+..++ .+....|+..+-+.+.
T Consensus 62 -------s~dGkrFASG~aDK~VI~W~~klEG~Lk---------YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~ 125 (1081)
T KOG1538|consen 62 -------AKDGKRFASGSADKSVIIWTSKLEGILK---------YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS 125 (1081)
T ss_pred -------ccCCceeccCCCceeEEEecccccceee---------eccCCeeeEeecCchHHHhhhcchhhccccChhhhh
Confidence 5679999999999999999876 23221 111 1222222222 1222333322211111
Q ss_pred --ccccccccccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCc
Q 000673 164 --DHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGR 241 (1358)
Q Consensus 164 --~~~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg 241 (1358)
+..+..-..++.-..|+....-.--.++|.|-+....+-+..-..|. .-.||.++++.+....|. ++.+.....+.
T Consensus 126 V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg-~Nspiwsi~~~p~sg~G~-~di~aV~DW~q 203 (1081)
T KOG1538|consen 126 VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGG-SNSPIWSICWNPSSGEGR-NDILAVADWGQ 203 (1081)
T ss_pred HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCC-CCCCceEEEecCCCCCCc-cceEEEEeccc
Confidence 01111111111111222222222334556555543332222221111 345699999986643333 78888888999
Q ss_pred EEEEecccCcccccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCceEEeecCCCcccceeeeeecc
Q 000673 242 LQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHCIFRLLGSGSTIGEICFVDNL 321 (1358)
Q Consensus 242 ~vkvW~l~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~i~d~l~~~~~~~~~~~~~~~ 321 (1358)
++....+++.. .+ +.+.+ .-...++++.+.|..++++++++.+--.+.+|..+|.+
T Consensus 204 TLSFy~LsG~~----Ig--------k~r~L------~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTv------ 259 (1081)
T KOG1538|consen 204 TLSFYQLSGKQ----IG--------KDRAL------NFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTV------ 259 (1081)
T ss_pred eeEEEEeccee----ec--------ccccC------CCCchhheeccCCcEEEEccCCCceEEEeecCeEEeec------
Confidence 99999888741 11 11111 11236899999999999999998822222355555544
Q ss_pred eeeecCCCCCceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEc
Q 000673 322 FCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAIS 376 (1358)
Q Consensus 322 l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~ 376 (1358)
+. ...|+...-+ .++ ...++++.-||++.-|++-
T Consensus 260 ----g~--~D~WIWtV~~-~PN--------------sQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 260 ----GE--QDSWIWTVQA-KPN--------------SQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ----cc--cceeEEEEEE-ccC--------------CceEEEEEccCeeehhhhH
Confidence 11 2445554444 222 1178889999998877764
No 178
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=8.4e-10 Score=125.65 Aligned_cols=200 Identities=16% Similarity=0.125 Sum_probs=129.7
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCccccccc
Q 000673 20 TATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSS 99 (1358)
Q Consensus 20 tava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 99 (1358)
.+++|+.||..|+||+.||++++|+..+ ..+......|.++|.+|.| +
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-----~~t~l~e~~~~~eV~DL~F---------------------------S 195 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-----MLTILEEIAHHAEVKDLDF---------------------------S 195 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-----chhhhhhHhhcCcccccee---------------------------C
Confidence 6899999999999999999999999764 5666677789999999965 8
Q ss_pred CCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCccccccccccccccccccc
Q 000673 100 LDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSED 179 (1358)
Q Consensus 100 ~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~~~s~d 179 (1358)
||+++|+|.+.| ..+|||+++|.|+.+..--.-...-..+++...+.. ..+.|....
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~~l~laa~~--------------------- 252 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQ-ETLRLAASQ--------------------- 252 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCC-ceEEEEEec---------------------
Confidence 999999999999 999999999988876531100011222333222211 122222100
Q ss_pred ccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCcccccccCC
Q 000673 180 KEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGN 259 (1358)
Q Consensus 180 ~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~~~~~~~ 259 (1358)
..-+.-..+.+-+|+-. ..+....- ....+.|++|+|.. |++ .++-++.||.+-|.+...- ..
T Consensus 253 --~~~~~v~~~~~~~w~~~--~~l~~~~~-~~~~~siSsl~VS~---dGk---f~AlGT~dGsVai~~~~~l------q~ 315 (398)
T KOG0771|consen 253 --FPGGGVRLCDISLWSGS--NFLRLRKK-IKRFKSISSLAVSD---DGK---FLALGTMDGSVAIYDAKSL------QR 315 (398)
T ss_pred --CCCCceeEEEeeeeccc--cccchhhh-hhccCcceeEEEcC---CCc---EEEEeccCCcEEEEEecee------ee
Confidence 00000122344444432 11111100 00122499999984 544 8999999999999887753 10
Q ss_pred cceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce
Q 000673 260 GLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC 301 (1358)
Q Consensus 260 ~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~ 301 (1358)
....-+.|...|..+.|+||.+.++.++.+..
T Consensus 316 ----------~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 316 ----------LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred ----------eEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 11234578888999999999999888766544
No 179
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=9.9e-09 Score=114.51 Aligned_cols=308 Identities=14% Similarity=0.099 Sum_probs=179.5
Q ss_pred CCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCC-CCccceeEeeeC-cCcCEEEeeeccccccccCccccccccccc
Q 000673 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSS-YSEIKPVAMLCG-HSAPIADLSICYPAMVSRDGKAEHWKAENS 91 (1358)
Q Consensus 14 ~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~-~~~~~~~~~L~G-H~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~ 91 (1358)
.|++||.|+.||.++++||+|+.|-.+++|++...- ....+|+.+... |...|-||+|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F-------------------- 113 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF-------------------- 113 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE--------------------
Confidence 478999999999999999999999999999997310 123477776664 5689999987
Q ss_pred CcccccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCccccccccccc
Q 000673 92 SNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESV 171 (1358)
Q Consensus 92 ~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~ 171 (1358)
...+.+|.||..+|+|.+-|+.+.+-+...... ..-..+..+...+..-.+....
T Consensus 114 -------~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~---~~~~~VY~m~~~P~DN~~~~~t--------------- 168 (609)
T KOG4227|consen 114 -------DLENRFLYSGERWGTVIKHDIETKQSIYVANEN---NNRGDVYHMDQHPTDNTLIVVT--------------- 168 (609)
T ss_pred -------ccCCeeEecCCCcceeEeeecccceeeeeeccc---CcccceeecccCCCCceEEEEe---------------
Confidence 455789999999999999999987755433221 1112233332222111222222
Q ss_pred ccccccccccCCCCCCCCceEEEEeCCCce---EEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecc
Q 000673 172 EGDLVSEDKEVPMKNPPKCTLVIVDTYGLT---IVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPIS 248 (1358)
Q Consensus 172 ~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~---v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l 248 (1358)
.++.|.+||...-. -+++... .-......-|. | .+ ..+|++.+..+-+-||+.
T Consensus 169 ----------------~~~~V~~~D~Rd~~~~~~~~~~AN---~~~~F~t~~F~-P---~~-P~Li~~~~~~~G~~~~D~ 224 (609)
T KOG4227|consen 169 ----------------RAKLVSFIDNRDRQNPISLVLPAN---SGKNFYTAEFH-P---ET-PALILVNSETGGPNVFDR 224 (609)
T ss_pred ----------------cCceEEEEeccCCCCCCceeeecC---CCccceeeeec-C---CC-ceeEEeccccCCCCceee
Confidence 56788899876543 1122111 11111122222 2 22 457888888888889998
Q ss_pred cCcccccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce--EEeecCCCcccceeeeeecceeeec
Q 000673 249 KESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEG 326 (1358)
Q Consensus 249 ~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~~~~~~~~~~l~~~~ 326 (1358)
... ..++|.-+ -.+.+...+ ..=-.+-|++.|..++.+-...+ +||..... ..+....
T Consensus 225 R~~------~~~~~~~~-~~~~L~~~~---~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R----------~~V~k~D 284 (609)
T KOG4227|consen 225 RMQ------ARPVYQRS-MFKGLPQEN---TEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR----------CFVLKSD 284 (609)
T ss_pred ccc------cchHHhhh-ccccCcccc---hhhhheeeCCCCCeehhhhccCCCEEeeeeccc----------ceeEecc
Confidence 754 44454431 111111100 00135678999999988888777 77772111 1111112
Q ss_pred -CCCCC---ceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCccccCC--Cc--cc---------
Q 000673 327 -GSTNS---YVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFDYE--PH--FE--------- 389 (1358)
Q Consensus 327 -~~~~~---~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~~~--~~--~~--------- 389 (1358)
++++. ..+..+.+ .+| .+|+.++.+=.+++|++|..++.+... ++ .+
T Consensus 285 ~N~~GY~N~~T~KS~~F-~~D---------------~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTF-IDD---------------YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred CCCCcceeeeeeeeeee-ecc---------------eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 22222 22233333 233 268888888899999999755554421 11 01
Q ss_pred -cCCccCCCCCceeEeEeeccceEEEeeeecccccccccccCeEEEEec
Q 000673 390 -IPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSL 437 (1358)
Q Consensus 390 -i~~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~ 437 (1358)
.....++++..-.+.|+|-...|++.. .+.. +++|+.
T Consensus 349 ~~~VLrGHRSv~NQVRF~~H~~~l~SSG-----VE~~------~KlWS~ 386 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQHNNLLVSSG-----VENS------FKLWSD 386 (609)
T ss_pred eeEEEecccccccceeecCCcceEeccc-----hhhh------eecccc
Confidence 112345666666777777765555432 3344 788863
No 180
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1e-08 Score=117.52 Aligned_cols=286 Identities=11% Similarity=0.084 Sum_probs=177.4
Q ss_pred CCCCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccc
Q 000673 11 SGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAEN 90 (1358)
Q Consensus 11 ~~~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~ 90 (1358)
...|....|++|.|+|.-+.|.+++.||+++|+.+.. .....++-+.=-..||.+..|
T Consensus 208 a~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDG---k~N~~lqS~~l~~fPi~~a~f------------------- 265 (514)
T KOG2055|consen 208 AAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG---KVNPKLQSIHLEKFPIQKAEF------------------- 265 (514)
T ss_pred cCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecC---ccChhheeeeeccCccceeee-------------------
Confidence 3456677899999999999999999999999999983 333334444445688888876
Q ss_pred cCcccccccCCCC-eEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCC-ceeeeeCCCCCceEEEEeec---------cC
Q 000673 91 SSNVMGKSSLDNG-ALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSP-SVICTLPSNPRYVCIGCCFI---------DT 159 (1358)
Q Consensus 91 ~~~~~~~~s~d~~-~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~-s~i~~~~~~~~~~~l~c~~~---------~~ 159 (1358)
.|+|. .+++++.-..+-.||+.+++.......- +.. ..+..+..++....|...|. .+
T Consensus 266 --------~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~---g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 266 --------APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY---GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred --------cCCCceEEEecccceEEEEeeccccccccccCCC---CcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence 46677 9999999999999999998865432221 222 12333322222222333321 11
Q ss_pred Ccccccccccc-cccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCc--ceEEEeecCCCCCcceEEEE
Q 000673 160 NQLSDHHSFES-VEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPW--KFMDVVSLGEDMGKHYGLMV 236 (1358)
Q Consensus 160 ~~~~~~~~~~~-~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi--~~l~v~~~~~d~~~~~~lla 236 (1358)
+.++..-++.. +.+.-++.|....+....+++|.+||.....+++.+.- .+.| .++|.+. + ++.+++
T Consensus 335 ~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D----~G~v~gts~~~S~---n---g~ylA~ 404 (514)
T KOG2055|consen 335 KELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD----DGSVHGTSLCISL---N---GSYLAT 404 (514)
T ss_pred hhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee----cCccceeeeeecC---C---CceEEe
Confidence 11111111111 11334456666667777899999999999998888875 2223 3334332 2 569999
Q ss_pred ecCCcEEEEecccCcccccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce-EEeecCCCccccee
Q 000673 237 DSVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC-IFRLLGSGSTIGEI 315 (1358)
Q Consensus 237 ~s~dg~vkvW~l~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~-i~d~l~~~~~~~~~ 315 (1358)
||..|++-|++......... .. .+....-....|..+.|++|++.++.++.-.- -+++
T Consensus 405 GS~~GiVNIYd~~s~~~s~~-Pk----------Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL---------- 463 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNSCFASTN-PK----------PIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL---------- 463 (514)
T ss_pred ccCcceEEEeccchhhccCC-CC----------chhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE----------
Confidence 99999999999776421111 11 22223334557899999999999988876533 2222
Q ss_pred eeeecceeeecCCCC----CceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEc
Q 000673 316 CFVDNLFCLEGGSTN----SYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAIS 376 (1358)
Q Consensus 316 ~~~~~~l~~~~~~~~----~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~ 376 (1358)
-.+.+.....+.|.. .++....|.+.+. -+++++..|.+.||.+.
T Consensus 464 VHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG----------------~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 464 VHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG----------------YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EeccceeeeccCCCCCCcccceEEEEecCCCc----------------eEEeecCCCceeeEeec
Confidence 111122222233322 2344455553333 79999999999999985
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.05 E-value=2.9e-09 Score=115.37 Aligned_cols=170 Identities=16% Similarity=0.209 Sum_probs=128.8
Q ss_pred CceEEEEEe-cCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcE-EEEE-----ecCCCcEEEEEeCC
Q 000673 559 SHVSRQYFL-GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL-ITVM-----HHHVAPVRQIILSP 631 (1358)
Q Consensus 559 t~~~~~~l~-gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~-l~~~-----~~H~~~V~~l~~sp 631 (1358)
+.+++..|. .|-+.|.|+.|+ |++ ..+++-. |..|.+|++..+.. ...+ .+|....++-+|+|
T Consensus 111 tlE~v~~Ldteavg~i~cvew~-----Pns----~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Wsp 180 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWE-----PNS----DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSP 180 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEc-----CCC----CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCC
Confidence 345666665 577899999998 666 6677655 89999999987654 2222 13566778889998
Q ss_pred CCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEe-cCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC-C
Q 000673 632 PQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT-G 709 (1358)
Q Consensus 632 d~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l-~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t-g 709 (1358)
... |+.+++. .|+++..||+++.++...+ ..|...|..+.|+|+.+++++.|.| ||.||+||.|. .
T Consensus 181 HHd----gnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gD-------dgyvriWD~R~tk 248 (370)
T KOG1007|consen 181 HHD----GNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGD-------DGYVRIWDTRKTK 248 (370)
T ss_pred CCc----cceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCC-------CccEEEEeccCCC
Confidence 532 6677665 5889999999998876655 4688889999999999998865443 79999999986 6
Q ss_pred eEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEEEeCC
Q 000673 710 ARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQ 766 (1358)
Q Consensus 710 ~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~ 766 (1358)
..+.++.+|+.-|..+.|.+.-+.-+.+|+ .|..+..|...
T Consensus 249 ~pv~el~~HsHWvW~VRfn~~hdqLiLs~~----------------SDs~V~Lsca~ 289 (370)
T KOG1007|consen 249 FPVQELPGHSHWVWAVRFNPEHDQLILSGG----------------SDSAVNLSCAS 289 (370)
T ss_pred ccccccCCCceEEEEEEecCccceEEEecC----------------CCceeEEEecc
Confidence 789999999999999988765544444443 47888888654
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=2.7e-09 Score=118.36 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=113.3
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
+++|..+|+|+++++ .+++.+..+++|...++.+.|.- .|+ .+.+.||+.||+||+||
T Consensus 43 vav~lSngsv~lyd~---------------~tg~~l~~fk~~~~~~N~vrf~~----~ds---~h~v~s~ssDG~Vr~wD 100 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDK---------------GTGQLLEEFKGPPATTNGVRFIS----CDS---PHGVISCSSDGTVRLWD 100 (376)
T ss_pred EEEEecCCeEEEEec---------------cchhhhheecCCCCcccceEEec----CCC---CCeeEEeccCCeEEEEE
Confidence 899999999999554 36778899999999999999962 222 36799999999999999
Q ss_pred CCCCcEE--EEEecCC-CcEEEEEeCCCCCCCCCCCeEEEEe----CCCcEEEEECCCCcE-EEE-ecCCCCCcEEEEEc
Q 000673 608 LGSGNLI--TVMHHHV-APVRQIILSPPQTEHPWSDCFLSVG----EDFSVALASLETLRV-ERM-FPGHPNYPAKVVWD 678 (1358)
Q Consensus 608 l~sg~~l--~~~~~H~-~~V~~l~~spd~~~~~~g~~l~S~s----~D~tV~lwdl~~~~~-~~~-l~gH~~~V~~v~~s 678 (1358)
+++.... ..+..|. .+-.|++..-. ++.+++|. .|-.|.+||.|..+. ++. +..|...|++++|+
T Consensus 101 ~Rs~~e~a~~~~~~~~~~~f~~ld~nck------~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFH 174 (376)
T KOG1188|consen 101 IRSQAESARISWTQQSGTPFICLDLNCK------KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFH 174 (376)
T ss_pred eecchhhhheeccCCCCCcceEeeccCc------CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEec
Confidence 9876544 3455665 46677776544 67888875 478899999998766 443 46799999999999
Q ss_pred CCCC-EEEEEecCCccccCCCCeEEEEECCCC
Q 000673 679 CPRG-YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 679 pd~~-~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
|... .|++ ||.| |-|.|+|++.-
T Consensus 175 P~~pnlLlS------GSvD--GLvnlfD~~~d 198 (376)
T KOG1188|consen 175 PSDPNLLLS------GSVD--GLVNLFDTKKD 198 (376)
T ss_pred CCCCCeEEe------eccc--ceEEeeecCCC
Confidence 9765 5553 4444 99999999754
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.02 E-value=3.6e-09 Score=114.77 Aligned_cols=165 Identities=15% Similarity=0.194 Sum_probs=123.3
Q ss_pred ccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCc---eEEEEEecCCCCEEEEEEeccc
Q 000673 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH---VSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 506 ~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~---~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
+.+..++|+ ..-+...|+.+.+.+-|-+..||+ ++++ .....|-.|...|..++|.
T Consensus 147 s~~~aPlTS---FDWne~dp~~igtSSiDTTCTiWd---------------ie~~~~~~vkTQLIAHDKEV~DIaf~--- 205 (364)
T KOG0290|consen 147 SEFCAPLTS---FDWNEVDPNLIGTSSIDTTCTIWD---------------IETGVSGTVKTQLIAHDKEVYDIAFL--- 205 (364)
T ss_pred cccCCcccc---cccccCCcceeEeecccCeEEEEE---------------EeeccccceeeEEEecCcceeEEEec---
Confidence 345567777 223444577789999999999954 4343 3456788999999999997
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEec---CCCcEEEEEeCCCCCCCCCCCeEEEEeCC-CcEEEEECCC
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH---HVAPVRQIILSPPQTEHPWSDCFLSVGED-FSVALASLET 658 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~---H~~~V~~l~~spd~~~~~~g~~l~S~s~D-~tV~lwdl~~ 658 (1358)
.+ ..++++|.|.||+||++|++..+--..+.. ...+...++|++.. -+++|+-..| ..|.+.|++.
T Consensus 206 --~~---s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD-----pnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 206 --KG---SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD-----PNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred --cC---ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC-----chHHhhhhcCCceEEEEEecC
Confidence 23 357999999999999999987553333222 24577888888763 3678886655 5689999985
Q ss_pred -CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 659 -LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 659 -~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
..++..+++|...|+.|+|.|....-+|.|. | |..+-+||+.+
T Consensus 276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaG------D-D~qaliWDl~q 319 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAG------D-DCQALIWDLQQ 319 (364)
T ss_pred CCcceehhhcCcccccceEecCCCCceeeecC------C-cceEEEEeccc
Confidence 4678999999999999999998776665433 3 79999999975
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=1.5e-08 Score=112.62 Aligned_cols=198 Identities=16% Similarity=0.117 Sum_probs=134.0
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCcccccccCCCCeEEEe
Q 000673 29 PTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISA 108 (1358)
Q Consensus 29 ~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~L~S~ 108 (1358)
..+|+|.+.|+|+++|..+ ...+..+.||++.+..+.|.+. .....+.|+
T Consensus 41 ~~vav~lSngsv~lyd~~t-----g~~l~~fk~~~~~~N~vrf~~~-------------------------ds~h~v~s~ 90 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-----GQLLEEFKGPPATTNGVRFISC-------------------------DSPHGVISC 90 (376)
T ss_pred eeEEEEecCCeEEEEeccc-----hhhhheecCCCCcccceEEecC-------------------------CCCCeeEEe
Confidence 5688999999999999997 5667788899999999988543 134569999
Q ss_pred eCCCeEEEEECCCCceEEEeeCCCCCCC-CceeeeeCCCCCceEEEEeeccCCcccccccccccccccccccccCCCCCC
Q 000673 109 CTDGVLCVWSRSSGHCRRRRKLPPWVGS-PSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVSEDKEVPMKNP 187 (1358)
Q Consensus 109 s~Dg~l~lWdl~~G~c~~~~~l~~~~~~-~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~~~s~d~~~~~~~~ 187 (1358)
|.||+||+||+.+.....+++.. .. +.....+..+++.. +.|+|.+-. .
T Consensus 91 ssDG~Vr~wD~Rs~~e~a~~~~~---~~~~~~f~~ld~nck~~-ii~~GtE~~--------------------------~ 140 (376)
T KOG1188|consen 91 SSDGTVRLWDIRSQAESARISWT---QQSGTPFICLDLNCKKN-IIACGTELT--------------------------R 140 (376)
T ss_pred ccCCeEEEEEeecchhhhheecc---CCCCCcceEeeccCcCC-eEEeccccc--------------------------c
Confidence 99999999999977655554433 22 23444444444443 445552211 1
Q ss_pred CCceEEEEeCCCceE-EEEEE-ecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCcccccccCCcceecC
Q 000673 188 PKCTLVIVDTYGLTI-VQTVF-HGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSS 265 (1358)
Q Consensus 188 ~~~~I~i~D~~tl~v-~~~l~-s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~~~~~~~~l~e~~ 265 (1358)
....+++||.+.-+. +..++ + |-.-|+.+.|.+. + ++.|+++|.||.+-|+|++..+++..
T Consensus 141 s~A~v~lwDvR~~qq~l~~~~eS---H~DDVT~lrFHP~--~---pnlLlSGSvDGLvnlfD~~~d~EeDa--------- 203 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLLRQLNES---HNDDVTQLRFHPS--D---PNLLLSGSVDGLVNLFDTKKDNEEDA--------- 203 (376)
T ss_pred CceEEEEEEeccccchhhhhhhh---ccCcceeEEecCC--C---CCeEEeecccceEEeeecCCCcchhh---------
Confidence 567899999988765 44443 4 5566999999855 3 67999999999999999987531111
Q ss_pred CcccceEeccCcccCceEEEEecCC-cEEEEEecCce--EEeecCCC
Q 000673 266 SQLDMAILQNGVVEGGHLVSVATCG-NIIALVLKDHC--IFRLLGSG 309 (1358)
Q Consensus 266 ~~~~~~~~~~~~~~~v~~vs~s~dg-~~~~~~~~~~~--i~d~l~~~ 309 (1358)
.+...+ +...|..+.|..++ +++.++.-... +|.+ +.+
T Consensus 204 ----L~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~el-e~~ 244 (376)
T KOG1188|consen 204 ----LLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL-EDG 244 (376)
T ss_pred ----HHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEc-cCC
Confidence 111111 12336777887777 45666665555 6666 444
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=9.3e-10 Score=127.35 Aligned_cols=127 Identities=23% Similarity=0.316 Sum_probs=109.1
Q ss_pred EEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEE-ecCCCcEEEEEeCCCCCCCCCCC
Q 000673 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSD 640 (1358)
Q Consensus 562 ~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~-~~H~~~V~~l~~spd~~~~~~g~ 640 (1358)
..+.|.||+|-|+||.|+ .|| .+|+|||.|-.+.|||...-|+++.+ .||...|.++.|-|... .+
T Consensus 42 lE~eL~GH~GCVN~LeWn-----~dG----~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn----nr 108 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWN-----ADG----ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN----NR 108 (758)
T ss_pred hhhhhccccceecceeec-----CCC----CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC----Ce
Confidence 457789999999999998 788 99999999999999999998988886 58999999999999743 57
Q ss_pred eEEEEeCCCcEEEEECCC----------CcEEEEecCCCCCcEEEEEcCCC-CEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 641 CFLSVGEDFSVALASLET----------LRVERMFPGHPNYPAKVVWDCPR-GYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 641 ~l~S~s~D~tV~lwdl~~----------~~~~~~l~gH~~~V~~v~~spd~-~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
.++||+.|..|+|+|+.. ....+.+..|...|..++-.|++ ..+. ++.+||+||-+|++..
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw--------sasEDGtirQyDiREp 180 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW--------SASEDGTIRQYDIREP 180 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEE--------EecCCcceeeecccCC
Confidence 999999999999999984 23456677899999999999999 4454 4445699999999863
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=3.6e-08 Score=121.93 Aligned_cols=192 Identities=15% Similarity=0.110 Sum_probs=130.2
Q ss_pred cccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccc
Q 000673 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLK 556 (1358)
Q Consensus 477 ~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d 556 (1358)
.+..+.....|++||.....-. .....+-..-||++ +.+.-..+.++.|+.||.+++++-....
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~---~diP~~s~t~vTaL---S~~~~~gn~i~AGfaDGsvRvyD~R~a~---------- 1242 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVV---ADIPYGSSTLVTAL---SADLVHGNIIAAGFADGSVRVYDRRMAP---------- 1242 (1387)
T ss_pred eEEecCCeeEEEEEecccceeE---eecccCCCccceee---cccccCCceEEEeecCCceEEeecccCC----------
Confidence 5666666788999998654221 11122334455552 2233334569999999999995432111
Q ss_pred cCCceEEEEEecCCCC--EEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEE--EEecCC--C-cEEEEEe
Q 000673 557 VNSHVSRQYFLGHTGA--VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLIT--VMHHHV--A-PVRQIIL 629 (1358)
Q Consensus 557 ~~t~~~~~~l~gH~~~--V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~--~~~~H~--~-~V~~l~~ 629 (1358)
....+...+.|+.. |..+.+. +.| -..|+|||.||.|++||++...... +...|. | .++++..
T Consensus 1243 --~ds~v~~~R~h~~~~~Iv~~slq-----~~G---~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1243 --PDSLVCVYREHNDVEPIVHLSLQ-----RQG---LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred --ccccceeecccCCcccceeEEee-----cCC---CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeee
Confidence 11356778899988 9999997 444 2379999999999999998743222 233333 3 5999999
Q ss_pred CCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCC-------CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEE
Q 000673 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH-------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1358)
Q Consensus 630 spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH-------~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~ 702 (1358)
++. ...+|||+. +.|+||++. |+.+..+..+ .+.+.+++|||..-.+++| +. |.+|.
T Consensus 1313 H~h------apiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG------~~--Ds~V~ 1376 (1387)
T KOG1517|consen 1313 HEH------APIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG------SA--DSTVS 1376 (1387)
T ss_pred ccC------CCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhc------cC--CceEE
Confidence 988 789999998 999999987 4443333322 2356899999999888853 23 48999
Q ss_pred EEECCCCe
Q 000673 703 IWDVKTGA 710 (1358)
Q Consensus 703 vWd~~tg~ 710 (1358)
||..+.+.
T Consensus 1377 iYs~~k~~ 1384 (1387)
T KOG1517|consen 1377 IYSCEKPR 1384 (1387)
T ss_pred EeecCCcC
Confidence 99876543
No 187
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.98 E-value=6.5e-09 Score=120.76 Aligned_cols=168 Identities=15% Similarity=0.232 Sum_probs=123.6
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
++.|..-|.+.+.+-. ... ..+..+.. . .--+..|+|+.|-| .+ +..++.+-.+|...++|
T Consensus 188 llIGf~tGqvq~idp~--~~~--~sklfne~-----r--~i~ktsvT~ikWvp-----g~---~~~Fl~a~~sGnlyly~ 248 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPI--NFE--VSKLFNEE-----R--LINKSSVTCIKWVP-----GS---DSLFLVAHASGNLYLYD 248 (636)
T ss_pred eEEeeccCceEEecch--hhH--HHHhhhhc-----c--cccccceEEEEEEe-----CC---CceEEEEEecCceEEee
Confidence 7888888988884321 110 00000000 0 01247899999974 22 36788888999999997
Q ss_pred CCC--------------Cc--------------EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC
Q 000673 608 LGS--------------GN--------------LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1358)
Q Consensus 608 l~s--------------g~--------------~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~ 659 (1358)
..- +. ++..+.--.+.|+..+|+|| |+++|+++.||.+||+|..+.
T Consensus 249 ~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D------G~~LA~VSqDGfLRvF~fdt~ 322 (636)
T KOG2394|consen 249 KEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD------GKYLATVSQDGFLRIFDFDTQ 322 (636)
T ss_pred ccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC------CceEEEEecCceEEEeeccHH
Confidence 641 11 12222223467889999999 999999999999999999998
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeee
Q 000673 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1358)
Q Consensus 660 ~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~ 728 (1358)
+.+..++.--+...||+|+|||+||++|+.| .-|.||.+..++.+..-+||.+.|..+.|-
T Consensus 323 eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED--------DLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 323 ELLGVMKSYFGGLLCVCWSPDGKYIVTGGED--------DLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred HHHHHHHhhccceEEEEEcCCccEEEecCCc--------ceEEEEEeccceEEEeccccccceeeEeec
Confidence 8776666555678999999999999976654 799999999999999999999999888765
No 188
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=8.6e-09 Score=118.70 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=89.9
Q ss_pred cEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCC--CEEEEEEeccccCCCCC
Q 000673 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTG--AVLCLAAHRMVGTAKGW 588 (1358)
Q Consensus 511 ~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~--~V~~l~~sp~~~~~dg~ 588 (1358)
.|++++|..+..- +...+.|-.|++ |....+...+.-.-........+.++||.+ .|.++-|. -|..
T Consensus 338 ~ITgl~Ysh~~sE----lLaSYnDe~IYL--F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf----GPrs- 406 (559)
T KOG1334|consen 338 NITGLVYSHDGSE----LLASYNDEDIYL--FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFF----GPRS- 406 (559)
T ss_pred cceeEEecCCccc----eeeeecccceEE--eccccccCCCCCCCcchhhccchhhcccccccccceeeec----cCcc-
Confidence 3555554333332 666677777777 443332211111111112223455899985 47788775 2555
Q ss_pred ccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc
Q 000673 589 SFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1358)
Q Consensus 589 ~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~ 660 (1358)
.+++|||.-|.|.||+-.+++.++-+.+-...|+||.-+|- --.|||.+-|..||||...+.+
T Consensus 407 ---EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~------~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 407 ---EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH------LPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ---ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC------CchhhccCCccceeeecCCccc
Confidence 89999999999999999999999999987779999987776 6789999999999999875443
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.94 E-value=3.3e-10 Score=136.36 Aligned_cols=121 Identities=19% Similarity=0.352 Sum_probs=109.6
Q ss_pred ceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCC
Q 000673 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1358)
Q Consensus 560 ~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g 639 (1358)
.+.++.|.||.+.|.|..|. ..| .++++|+.|..|+||..+++.|+....||.+.|+.++.+.+ .
T Consensus 180 mk~ikrLlgH~naVyca~fD-----rtg----~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~------n 244 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFD-----RTG----RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN------N 244 (1113)
T ss_pred HHHHHHHHhhhhheeeeeec-----ccc----ceEeecCccceeeeeeccchhhhccCCCCccccchhccchh------h
Confidence 34566788999999999996 556 89999999999999999999999999999999999999988 5
Q ss_pred CeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 640 ~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
..++++|.|..|++|-+.++.++..+.||++.|++++|+|-. .++| ||++++||.+
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----------sss~-dgt~~~wd~r 300 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----------SSSD-DGTCRIWDAR 300 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----------cCCC-CCceEecccc
Confidence 789999999999999999999999999999999999999964 1344 6999999987
No 190
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.94 E-value=3.8e-08 Score=107.10 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=96.6
Q ss_pred CCCCEEEEEEeccccCCCCCccCcE--EEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEe
Q 000673 569 HTGAVLCLAAHRMVGTAKGWSFNEV--LVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG 646 (1358)
Q Consensus 569 H~~~V~~l~~sp~~~~~dg~~~~~~--L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s 646 (1358)
+.+.|.+++|+ |+| +. +++|..+..|.+||++ ++.+..+. ...++.+.|+|+ |++++.++
T Consensus 58 ~~~~I~~~~Ws-----P~g----~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~------G~~l~~~g 119 (194)
T PF08662_consen 58 KEGPIHDVAWS-----PNG----NEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPD------GRFLVLAG 119 (194)
T ss_pred CCCceEEEEEC-----cCC----CEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCC------CCEEEEEE
Confidence 35679999998 677 54 4556678899999996 77777664 578899999999 89999987
Q ss_pred CC---CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEE
Q 000673 647 ED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1358)
Q Consensus 647 ~D---~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l 715 (1358)
.+ |.+.+||+++.+.+..+. |. .++.++|+|||++++++... .....|+.++||++ +|+++...
T Consensus 120 ~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~--~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTS--PRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred ccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEec--cceeccccEEEEEe-cCeEeEec
Confidence 54 569999999999887765 33 47899999999999976532 12234689999999 58776653
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.93 E-value=5.2e-08 Score=119.83 Aligned_cols=262 Identities=13% Similarity=0.100 Sum_probs=165.7
Q ss_pred CCCCceeEeEeeccceEEEeeeecccccccccccCeEEEEecCCCCCCCCc-ceeEEeecCccce---eeeccccccCCC
Q 000673 396 PSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWSLSQKHSGPGK-QCRMVGEGFSFVD---WVNNSTFLDENE 471 (1358)
Q Consensus 396 ~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws~~~~~~~~~~-~~~~l~~g~~~g~---w~~~~~~~~~~~ 471 (1358)
....+..+.|++....++.... + .+ .|-+|++......... .+........... |..+. .
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~--y--~G------qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~------~ 304 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGC--Y--NG------QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE------H 304 (555)
T ss_pred cCCceeEEEeccCCcceEEeec--c--Cc------eEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC------C
Confidence 3466788999999887776651 1 12 3889975443211000 1111111111111 44431 1
Q ss_pred CcccccccccccCCccccccccCCCCCC-Cceeecc-------cCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEec
Q 000673 472 GSCTGKSDLTFCQDTVPRSEHVDSRQAG-DGRDDFV-------HKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFD 543 (1358)
Q Consensus 472 g~~i~~l~~t~~~s~i~~W~~~~~~~~~-~~~~~~~-------~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~ 543 (1358)
.. .+.+.+.++.+..|++..-..+. ....... .....++++.|.+ ..|+.++.|++.|.|......
T Consensus 305 ~~---~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~---~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 305 NT---EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP---TDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred CC---ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc---CCCceEEEEcCCcEEEEEecc
Confidence 11 35666778999999875433221 1111111 1123455544433 345579999999999884432
Q ss_pred CcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCC-CCcEEEEEecCCC
Q 000673 544 LFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVA 622 (1358)
Q Consensus 544 ~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~-sg~~l~~~~~H~~ 622 (1358)
..... .....+.+..+..|.+.|.++.++|- + ...+.|++ |-+|+||.-. ...++..+..+..
T Consensus 379 g~~~~-------~~~~~~~~~~~~~h~g~v~~v~~nPF-----~---~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 379 GYTPA-------PEVSYKGHSTFITHIGPVYAVSRNPF-----Y---PKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD 442 (555)
T ss_pred CCccc-------ccccccccccccccCcceEeeecCCC-----c---cceeeeec-cceeEeccccCCCCcchhhhhccc
Confidence 11100 00111345567789999999999852 2 25566666 9999999988 6778888989999
Q ss_pred cEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCC--CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCe
Q 000673 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET--LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDV 700 (1358)
Q Consensus 623 ~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~--~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~Dgt 700 (1358)
.|++++|||.. -..|+++..||.+-+||+.. .+++.+..-+....+.+.|++.|+.|++|.. .|+
T Consensus 443 ~v~~vaWSptr-----pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~--------~G~ 509 (555)
T KOG1587|consen 443 YVTDVAWSPTR-----PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDA--------NGT 509 (555)
T ss_pred eeeeeEEcCcC-----ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecC--------CCc
Confidence 99999999983 35899999999999999874 3456666556556679999999999996543 389
Q ss_pred EEEEECCC
Q 000673 701 LFIWDVKT 708 (1358)
Q Consensus 701 V~vWd~~t 708 (1358)
+++|++..
T Consensus 510 ~~~~~l~~ 517 (555)
T KOG1587|consen 510 THILKLSE 517 (555)
T ss_pred EEEEEcCc
Confidence 99999964
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.92 E-value=8e-08 Score=113.42 Aligned_cols=158 Identities=14% Similarity=0.169 Sum_probs=119.0
Q ss_pred cEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEE---ecCCCCEEEEEEeccccCCCC
Q 000673 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF---LGHTGAVLCLAAHRMVGTAKG 587 (1358)
Q Consensus 511 ~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l---~gH~~~V~~l~~sp~~~~~dg 587 (1358)
++.+.....++.| ++.|-.||+|.+.+- ++++...+ -|-..+|++++|+|..+ + |
T Consensus 134 R~~~CsWtnDGqy----lalG~~nGTIsiRNk----------------~gEek~~I~Rpgg~Nspiwsi~~~p~sg-~-G 191 (1081)
T KOG1538|consen 134 RIICCSWTNDGQY----LALGMFNGTISIRNK----------------NGEEKVKIERPGGSNSPIWSICWNPSSG-E-G 191 (1081)
T ss_pred eEEEeeecCCCcE----EEEeccCceEEeecC----------------CCCcceEEeCCCCCCCCceEEEecCCCC-C-C
Confidence 4555566666777 999999999999421 22222222 35678999999997543 2 2
Q ss_pred CccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecC
Q 000673 588 WSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1358)
Q Consensus 588 ~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~g 667 (1358)
....++...+..|+.++.+. |+.+..-+.-.-.-.|+.+.|+ |++++.|+.|+.++++- +.|-.+.++..
T Consensus 192 --~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~N------GEy~LiGGsdk~L~~fT-R~GvrLGTvg~ 261 (1081)
T KOG1538|consen 192 --RNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTN------GEYILLGGSDKQLSLFT-RDGVRLGTVGE 261 (1081)
T ss_pred --ccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccC------CcEEEEccCCCceEEEe-ecCeEEeeccc
Confidence 35789999999999999874 6655533322334568888888 99999999999999996 66777777766
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 668 H~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
...+|+.|..+|++++++.||.| |+|-.|++-.
T Consensus 262 ~D~WIWtV~~~PNsQ~v~~GCqD--------GTiACyNl~f 294 (1081)
T KOG1538|consen 262 QDSWIWTVQAKPNSQYVVVGCQD--------GTIACYNLIF 294 (1081)
T ss_pred cceeEEEEEEccCCceEEEEEcc--------CeeehhhhHH
Confidence 77899999999999999998876 8999998753
No 193
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.91 E-value=1.8e-08 Score=117.18 Aligned_cols=150 Identities=21% Similarity=0.230 Sum_probs=112.8
Q ss_pred CcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcc---------cc------CCceEEEEEecCCCCEE
Q 000673 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL---------KV------NSHVSRQYFLGHTGAVL 574 (1358)
Q Consensus 510 ~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~---------d~------~t~~~~~~l~gH~~~V~ 574 (1358)
..|+++..++... ..++....+|.+++++-..... .+...| .+ .+..++..+.--++.|+
T Consensus 220 tsvT~ikWvpg~~---~~Fl~a~~sGnlyly~~~~~~~--~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in 294 (636)
T KOG2394|consen 220 SSVTCIKWVPGSD---SLFLVAHASGNLYLYDKEIVCG--ATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSIN 294 (636)
T ss_pred cceEEEEEEeCCC---ceEEEEEecCceEEeecccccc--CCCCcccccCCCCeeEEeeeeccccCCccceeEecccccc
Confidence 5677765433322 2356777889988864321111 111111 11 11122333322345788
Q ss_pred EEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEE
Q 000673 575 CLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALA 654 (1358)
Q Consensus 575 ~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lw 654 (1358)
..+|+ ||| ++|++.|+||.+||+|..+.+++..++..-+...|++|+|| |++|++|+.|--|.||
T Consensus 295 ~f~FS-----~DG----~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD------GKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 295 EFAFS-----PDG----KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD------GKYIVTGGEDDLVTVW 359 (636)
T ss_pred ceeEc-----CCC----ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC------ccEEEecCCcceEEEE
Confidence 88887 899 99999999999999999999998888888889999999999 9999999999999999
Q ss_pred ECCCCcEEEEecCCCCCcEEEEEcC
Q 000673 655 SLETLRVERMFPGHPNYPAKVVWDC 679 (1358)
Q Consensus 655 dl~~~~~~~~l~gH~~~V~~v~~sp 679 (1358)
.+..++.+..-+||.++|..|+|+|
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999985
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=8.6e-08 Score=118.72 Aligned_cols=103 Identities=23% Similarity=0.392 Sum_probs=75.3
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCC--C-CEEEEEEeccccCCCCCccCcEEEEEeCCCcEE
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT--G-AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~--~-~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~ 604 (1358)
|++|+.||.|++++.... ..+.......|. | .++++..| ++. .++++|+. +.|+
T Consensus 1272 lvSgs~~G~I~~~DlR~~-------------~~e~~~~iv~~~~yGs~lTal~VH-----~ha----piiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMS-------------SKETFLTIVAHWEYGSALTALTVH-----EHA----PIIASGSA-QLIK 1328 (1387)
T ss_pred eeeeccCCeEEEEecccC-------------cccccceeeeccccCccceeeeec-----cCC----CeeeecCc-ceEE
Confidence 899999999999554321 111122233333 3 58999998 445 89999999 9999
Q ss_pred EEeCCCCcEEEEEecC-------CCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc
Q 000673 605 IWDLGSGNLITVMHHH-------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1358)
Q Consensus 605 lWDl~sg~~l~~~~~H-------~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~ 660 (1358)
||++. |+.+..++.+ .+.+.|++|+|- --.++.|+.|.+|.+|..++.+
T Consensus 1329 Iy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~------~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1329 IYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPH------RLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEecC-hhhhcccccCcccccCcCCCcceeeecch------hHhhhhccCCceEEEeecCCcC
Confidence 99985 6656555433 357899999998 5688999999999999876543
No 195
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.89 E-value=5.5e-09 Score=112.18 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=113.5
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
++.|.++|.+.+|+.+.-.........| +.......|..+|.+|.|.+. . ..=++|+.|..+..|+
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~-----kv~~~~ash~qpvlsldyas~---~------~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSS-----KVESPNASHKQPVLSLDYASS---C------DRGISGGADDKLVMYS 233 (323)
T ss_pred EEEeccCCeEEEEEccCCceeecccccc-----ccccchhhccCcceeeeechh---h------cCCcCCCccccceeee
Confidence 8999999999997665321111111111 233445679999999999631 1 3457889999999999
Q ss_pred CCC--CcEE--EEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCE
Q 000673 608 LGS--GNLI--TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGY 683 (1358)
Q Consensus 608 l~s--g~~l--~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~ 683 (1358)
++. |.+. ...+...-.|..+.+-|| ++.+|++++|+.||+|+-++.+++..+.-|...|++++|+|+...
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD------~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPD------GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccC------CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence 863 3322 122233446888889888 899999999999999999999999999999999999999999888
Q ss_pred EEEEecCCccccCCCCeEEEEEC
Q 000673 684 IACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 684 L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
++. +++|+.|.+|++
T Consensus 308 mAa--------askD~rISLWkL 322 (323)
T KOG0322|consen 308 MAA--------ASKDARISLWKL 322 (323)
T ss_pred hhh--------ccCCceEEeeec
Confidence 883 344599999987
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=5.6e-09 Score=121.03 Aligned_cols=168 Identities=17% Similarity=0.183 Sum_probs=127.7
Q ss_pred ceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEE-ecCCCCEEEEEEe
Q 000673 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAH 579 (1358)
Q Consensus 501 ~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l-~gH~~~V~~l~~s 579 (1358)
+...+.||++-|.++...+++.+ |++|+.|-.+.||+ .-..+.++.+ .||+..|.|+.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~l----L~SGSDD~r~ivWd---------------~~~~KllhsI~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGEL----LASGSDDTRLIVWD---------------PFEYKLLHSISTGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCCE----EeecCCcceEEeec---------------chhcceeeeeecccccceeEEeee
Confidence 33557899999999998888888 99999999999943 3234455554 6999999999998
Q ss_pred ccccCCCCCccCcEEEEEeCCCcEEEEeCCC----------CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCC
Q 000673 580 RMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS----------GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1358)
Q Consensus 580 p~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~s----------g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~ 649 (1358)
| ...+.+++||..|..|+++|+.. .+..+.+..|...|..|+..|++ -+.|.+++.||
T Consensus 103 P-------~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-----PhtfwsasEDG 170 (758)
T KOG1310|consen 103 P-------YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-----PHTFWSASEDG 170 (758)
T ss_pred c-------cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-----CceEEEecCCc
Confidence 6 23458999999999999999984 23566788899999999999983 27999999999
Q ss_pred cEEEEECCCCc-------EEEEe-cCCC--CCcEEEEEcCCCC-EEEEEecCCccccCCCCeEEEEECC
Q 000673 650 SVALASLETLR-------VERMF-PGHP--NYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 650 tV~lwdl~~~~-------~~~~l-~gH~--~~V~~v~~spd~~-~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
+|+-+|++... +...+ .-+. -...++..+|... +|++|+ +| --+|+||.+
T Consensus 171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGg------sd--pfarLYD~R 231 (758)
T KOG1310|consen 171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGG------SD--PFARLYDRR 231 (758)
T ss_pred ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecC------CC--chhhhhhhh
Confidence 99999998632 11111 1122 2346899999765 566543 33 689999964
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=9.1e-07 Score=109.15 Aligned_cols=311 Identities=17% Similarity=0.183 Sum_probs=174.1
Q ss_pred eCCCCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCccccccccc
Q 000673 10 WSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAE 89 (1358)
Q Consensus 10 w~~~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~ 89 (1358)
|-..-|+..++|+++||.++++|+|..||+|.+|.=-..+ ..-....++-=|..+|++++|
T Consensus 199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-~~~~t~t~lHWH~~~V~~L~f------------------ 259 (792)
T KOG1963|consen 199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-DDSETCTLLHWHHDEVNSLSF------------------ 259 (792)
T ss_pred hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc-cccccceEEEecccccceeEE------------------
Confidence 3344566668999999999999999999999999865211 112223445569999999977
Q ss_pred ccCcccccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeC--CCCCceEEEEeeccCCccccccc
Q 000673 90 NSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLP--SNPRYVCIGCCFIDTNQLSDHHS 167 (1358)
Q Consensus 90 ~~~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~--~~~~~~~l~c~~~~~~~~~~~~~ 167 (1358)
+.+|.+|.||+..|.|.+|.+++++ . .-+| .-.+.|..+. +++++.++.|.
T Consensus 260 ---------S~~G~~LlSGG~E~VLv~Wq~~T~~-k--qfLP---RLgs~I~~i~vS~ds~~~sl~~~------------ 312 (792)
T KOG1963|consen 260 ---------SSDGAYLLSGGREGVLVLWQLETGK-K--QFLP---RLGSPILHIVVSPDSDLYSLVLE------------ 312 (792)
T ss_pred ---------ecCCceEeecccceEEEEEeecCCC-c--cccc---ccCCeeEEEEEcCCCCeEEEEec------------
Confidence 6789999999999999999999998 2 2233 1122233222 33343344333
Q ss_pred ccccccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccc------cCCcceEEEeecCCCCCcceEEEEecCCc
Q 000673 168 FESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLS------IGPWKFMDVVSLGEDMGKHYGLMVDSVGR 241 (1358)
Q Consensus 168 ~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~------~~pi~~l~v~~~~~d~~~~~~lla~s~dg 241 (1358)
|..|.+....++++..++.+ -.. ..+.....++.- |.+ -..++--+..|
T Consensus 313 ---------------------DNqI~li~~~dl~~k~tIsg-i~~~~~~~k~~~~~l~t~~~i--dpr-~~~~vln~~~g 367 (792)
T KOG1963|consen 313 ---------------------DNQIHLIKASDLEIKSTISG-IKPPTPSTKTRPQSLTTGVSI--DPR-TNSLVLNGHPG 367 (792)
T ss_pred ---------------------CceEEEEeccchhhhhhccC-ccCCCccccccccccceeEEE--cCC-CCceeecCCCc
Confidence 34555555555544333332 000 001111111111 221 22344455667
Q ss_pred EEEEecccCcccccccCCcceecCCcccceEeccCc------ccCceEEEEecCCcEEEEEecCc--------e----EE
Q 000673 242 LQLVPISKESHLDREEGNGLCKSSSQLDMAILQNGV------VEGGHLVSVATCGNIIALVLKDH--------C----IF 303 (1358)
Q Consensus 242 ~vkvW~l~~~~~~~~~~~~l~e~~~~~~~~~~~~~~------~~~v~~vs~s~dg~~~~~~~~~~--------~----i~ 303 (1358)
.+..+++-.- +.+|+- .+.-.+-+ .-++++++.+..|+.++++-..- . +|
T Consensus 368 ~vQ~ydl~td-------~~i~~~-----~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW 435 (792)
T KOG1963|consen 368 HVQFYDLYTD-------STIYKL-----QVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFW 435 (792)
T ss_pred eEEEEecccc-------ceeeeE-----EEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEE
Confidence 7778887652 111221 00011111 22356777788888887764321 1 22
Q ss_pred eecCCCcccceeeeeecceeeecCCCCCceEEEEeecccchhccccccccccccceEEEEEecCCcEEEEEEccCCcccc
Q 000673 304 RLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCTTFYENFAVWDNRGSAIVYAISYMNEKFD 383 (1358)
Q Consensus 304 d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~~~~~~~ 383 (1358)
... .....+ .+......|++..++...|+.... ..+.+..+.+|.+++|.+..-.+.++
T Consensus 436 ~~n---~~~kt~----~L~T~I~~PH~~~~vat~~~~~~r--------------s~~~vta~~dg~~KiW~~~~~~n~~k 494 (792)
T KOG1963|consen 436 QYN---PNSKTF----ILNTKINNPHGNAFVATIFLNPTR--------------SVRCVTASVDGDFKIWVFTDDSNIYK 494 (792)
T ss_pred EEc---CCccee----EEEEEEecCCCceeEEEEEecCcc--------------cceeEEeccCCeEEEEEEecccccCc
Confidence 221 111222 223344555566666666662221 11678889999999999965544444
Q ss_pred CCCcc-ccCCccCCCCCceeEeEeeccceEEEeeeecccccccccccCeEEEEe
Q 000673 384 YEPHF-EIPAVSYPSGVKFSIHFIQMSLYLLRMETVCFHVEETSQWRPYISVWS 436 (1358)
Q Consensus 384 ~~~~~-~i~~~~~~~~~~~~~~f~~~~~~L~~v~s~~~~~~~~~~~~p~v~vws 436 (1358)
..... +..-..++.....+.+|+++|..|. ++ .++. +.+|+
T Consensus 495 ~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s-----~~~~------Itiwd 536 (792)
T KOG1963|consen 495 KSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VS-----FDDT------ITIWD 536 (792)
T ss_pred CccceEEeeeeccccCcccchhhcCCCcEEE-Ee-----cCCE------EEEec
Confidence 43322 2222335566777889999985444 33 3344 88995
No 198
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1.3e-07 Score=112.22 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=120.5
Q ss_pred EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEe--cCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEE
Q 000673 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL--GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIR 604 (1358)
Q Consensus 527 ~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~--gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~ 604 (1358)
.++.|...|+|.++. +..|+....+. +|.+.|+++.++ .+- ..|-|++.|+.+.
T Consensus 72 ~lvlgt~~g~v~~ys---------------~~~g~it~~~st~~h~~~v~~~~~~-----~~~----~ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYS---------------VAGGEITAKLSTDKHYGNVNEILDA-----QRL----GCIYSVGADLKVV 127 (541)
T ss_pred EEEeecCCccEEEEE---------------ecCCeEEEEEecCCCCCcceeeecc-----ccc----CceEecCCceeEE
Confidence 489999999998844 44566666664 699999999986 333 6899999999999
Q ss_pred EEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCC----
Q 000673 605 IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCP---- 680 (1358)
Q Consensus 605 lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd---- 680 (1358)
.|+...++.++.+.+....+.++.++|| |..+++++ ++|++||+++++.+..|+||.++|.++.|--+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sl~is~D------~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 128 YILEKEKVIIRIWKEQKPLVSSLCISPD------GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGI 199 (541)
T ss_pred EEecccceeeeeeccCCCccceEEEcCC------CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecccc
Confidence 9999999999999999999999999999 88999887 68999999999999999999999999999776
Q ss_pred -CCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 681 -RGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 681 -~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
|.|+++ +.+.+.-+.+|-.+.
T Consensus 200 ~G~~vLs-------sa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 200 IGKYVLS-------SAAAERGITVWVVEK 221 (541)
T ss_pred ccceeee-------ccccccceeEEEEEc
Confidence 778873 334446777886653
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=6e-08 Score=110.78 Aligned_cols=168 Identities=15% Similarity=0.108 Sum_probs=123.3
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
+++|..||.+++|+|. +...+.....|.+.|.+|.|+ ||| +.|+|-+.| ..+||+
T Consensus 159 latgg~dg~lRv~~~P---------------s~~t~l~e~~~~~eV~DL~FS-----~dg----k~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 159 LATGGTDGTLRVWEWP---------------SMLTILEEIAHHAEVKDLDFS-----PDG----KFLASIGAD-SARVWS 213 (398)
T ss_pred eeeccccceEEEEecC---------------cchhhhhhHhhcCccccceeC-----CCC----cEEEEecCC-ceEEEE
Confidence 9999999999997764 333456667899999999998 899 999999999 999999
Q ss_pred CCCCcEEEEEec--CCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc------EEEEecCCCCCcEEEEEcC
Q 000673 608 LGSGNLITVMHH--HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR------VERMFPGHPNYPAKVVWDC 679 (1358)
Q Consensus 608 l~sg~~l~~~~~--H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~------~~~~l~gH~~~V~~v~~sp 679 (1358)
+++|.++..... .......+.|+-|+.- +.-.+++....-+.|++||+...+ ..+....+ ..|++++.++
T Consensus 214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~VS~ 291 (398)
T KOG0771|consen 214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQ-ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLAVSD 291 (398)
T ss_pred eccCchhhhcCCcccchhhhhceecccCCC-ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEEEcC
Confidence 999977666542 2234567788877310 000233444455678887765322 11222334 3799999999
Q ss_pred CCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEE-eCCCCceEEEeeecc
Q 000673 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL-RGTASHSMFDHFCKG 730 (1358)
Q Consensus 680 d~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l-~GH~~~v~~~~~~~~ 730 (1358)
+|++++.|.. ||.|-|++..+-++++.. +.|...|+.+.||++
T Consensus 292 dGkf~AlGT~--------dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 292 DGKFLALGTM--------DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred CCcEEEEecc--------CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence 9999997654 389999999988777665 479999999999973
No 200
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.76 E-value=8.1e-08 Score=119.88 Aligned_cols=141 Identities=22% Similarity=0.258 Sum_probs=117.6
Q ss_pred EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000673 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1358)
Q Consensus 527 ~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lW 606 (1358)
.+++|+--+.|.+|++.- +..+. .+.||.+.|..+.++ -|| .+++|.|+|.++|+|
T Consensus 147 ~i~~gsv~~~iivW~~~~--------------dn~p~-~l~GHeG~iF~i~~s-----~dg----~~i~s~SdDRsiRlW 202 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHE--------------DNKPI-RLKGHEGSIFSIVTS-----LDG----RYIASVSDDRSIRLW 202 (967)
T ss_pred EEEeccccccEEEEeccc--------------cCCcc-eecccCCceEEEEEc-----cCC----cEEEEEecCcceeee
Confidence 489999999999987651 11122 688999999999997 778 999999999999999
Q ss_pred eCCCCcEEE-EEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCC-CcEEEEEcCCCCEE
Q 000673 607 DLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN-YPAKVVWDCPRGYI 684 (1358)
Q Consensus 607 Dl~sg~~l~-~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~-~V~~v~~spd~~~L 684 (1358)
++++.+.+. +..+|+..|.++.|.|. .+++++.|-+.++|+.+ ++.+..+.+|.. .++.++..++...+
T Consensus 203 ~i~s~~~~~~~~fgHsaRvw~~~~~~n--------~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 203 PIDSREVLGCTGFGHSARVWACCFLPN--------RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ecccccccCcccccccceeEEEEeccc--------eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEE
Confidence 999988776 67799999999999975 79999999999999754 566668888854 57899999888888
Q ss_pred EEEecCCccccCCCCeEEEEECCC
Q 000673 685 ACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 685 ~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
++++. |+.+++||+..
T Consensus 274 vT~g~--------Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 274 VTGGN--------DSTLKLWDLNG 289 (967)
T ss_pred Eeecc--------Ccchhhhhhhc
Confidence 85443 49999999864
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=8.5e-07 Score=108.86 Aligned_cols=158 Identities=9% Similarity=0.097 Sum_probs=106.8
Q ss_pred EEEEE-cCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEE-EEeCCCcEEE
Q 000673 528 IVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDCSIRI 605 (1358)
Q Consensus 528 lv~G~-~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~-Sgs~D~tI~l 605 (1358)
|+++. .+|.+.+|.++ ..+++ ...+.+|...+....|+ ||| +.|+ ++..++...+
T Consensus 262 La~~~~~~g~~~Iy~~d-------------~~~~~-~~~lt~~~~~~~~~~wS-----pDG----~~i~f~s~~~g~~~I 318 (429)
T PRK01742 262 LAFASSKDGVLNIYVMG-------------ANGGT-PSQLTSGAGNNTEPSWS-----PDG----QSILFTSDRSGSPQV 318 (429)
T ss_pred EEEEEecCCcEEEEEEE-------------CCCCC-eEeeccCCCCcCCEEEC-----CCC----CEEEEEECCCCCceE
Confidence 66654 68888776665 22333 34566777888899998 788 6555 4556888999
Q ss_pred EeCCCC-cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEE
Q 000673 606 WDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYI 684 (1358)
Q Consensus 606 WDl~sg-~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L 684 (1358)
|++... .....+ .+.+ .+..|+|+ |+.++.++.++ +.+||+.+++.......+ ....+.|+|+|++|
T Consensus 319 ~~~~~~~~~~~~l-~~~~--~~~~~SpD------G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i 386 (429)
T PRK01742 319 YRMSASGGGASLV-GGRG--YSAQISAD------GKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMI 386 (429)
T ss_pred EEEECCCCCeEEe-cCCC--CCccCCCC------CCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEE
Confidence 987532 222333 4443 45789999 88898888776 555999998865443333 23568899999999
Q ss_pred EEEecCCccccCCCCeEEEEEC--CCCeEEEEEeCCCCceEEEeee
Q 000673 685 ACLCRDHSRTSDAVDVLFIWDV--KTGARERVLRGTASHSMFDHFC 728 (1358)
Q Consensus 685 ~~g~~d~sgssD~DgtV~vWd~--~tg~~~~~l~GH~~~v~~~~~~ 728 (1358)
+.++. ++.+++|++ .+|...+.+.+|.+.+....|+
T Consensus 387 ~~~s~--------~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 387 IYSST--------QGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred EEEEc--------CCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 96432 266666664 3688899999888766544343
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.74 E-value=4.6e-07 Score=105.30 Aligned_cols=131 Identities=18% Similarity=0.302 Sum_probs=94.1
Q ss_pred CCCcEEEEEeeccCcccCCE--EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCC
Q 000673 508 KEKIVSSSMVISESFYAPYA--IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1358)
Q Consensus 508 h~~~Vts~~~i~~~~~~p~~--lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~ 585 (1358)
...+|.|.. |.|+. +++ +..|.+.|-.+... ...-..+.|.+-|.|+.|+|
T Consensus 144 ~~~~v~c~~------W~p~S~~vl~-c~g~h~~IKpL~~n---------------~k~i~WkAHDGiiL~~~W~~----- 196 (737)
T KOG1524|consen 144 NEESIRCAR------WAPNSNSIVF-CQGGHISIKPLAAN---------------SKIIRWRAHDGLVLSLSWST----- 196 (737)
T ss_pred cCceeEEEE------ECCCCCceEE-ecCCeEEEeecccc---------------cceeEEeccCcEEEEeecCc-----
Confidence 445777866 44442 333 45667777554322 12456789999999999983
Q ss_pred CCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEe
Q 000673 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1358)
Q Consensus 586 dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l 665 (1358)
-. ++++||++|..-++||- .|..+..-..|..+|++++|.|+ ..++.+|. ++.|+ -
T Consensus 197 ~s----~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-------~~~~v~S~-nt~R~-----------~ 252 (737)
T KOG1524|consen 197 QS----NIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-------KDYLLWSY-NTARF-----------S 252 (737)
T ss_pred cc----cceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-------cceeeeee-eeeee-----------c
Confidence 33 89999999999999996 47778888889999999999998 44444443 23331 1
Q ss_pred cCCCCCcEEEEEcCCCCEEEEEec
Q 000673 666 PGHPNYPAKVVWDCPRGYIACLCR 689 (1358)
Q Consensus 666 ~gH~~~V~~v~~spd~~~L~~g~~ 689 (1358)
....+.|..++|+|||..+++|+.
T Consensus 253 ~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 253 SPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred CCCccceEEEEEcCCCceeecccc
Confidence 223467899999999999997664
No 203
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.70 E-value=8.5e-07 Score=111.99 Aligned_cols=236 Identities=16% Similarity=0.103 Sum_probs=153.9
Q ss_pred CCCCceeecccCCCcEEEEEeeccC-cccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEE
Q 000673 497 QAGDGRDDFVHKEKIVSSSMVISES-FYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLC 575 (1358)
Q Consensus 497 ~~~~~~~~~~~h~~~Vts~~~i~~~-~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~ 575 (1358)
+.|.++..+..|...|..++..+.. .| +++|+.||+|++|+.....+ +..+.++..++.--.+++.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~----FvsgS~DGtVKvW~~~k~~~--------~~~s~rS~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSL----FVSGSDDGTVKVWNLRKLEG--------EGGSARSELTYSPEGSRVEK 1103 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCce----EEEecCCceEEEeeehhhhc--------CcceeeeeEEEeccCCceEE
Confidence 4456777788899998887776666 66 99999999999977543222 11233344555545678888
Q ss_pred EEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCC--Cc-----EE--------------E-------------------
Q 000673 576 LAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GN-----LI--------------T------------------- 615 (1358)
Q Consensus 576 l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~s--g~-----~l--------------~------------------- 615 (1358)
+... +.| +.+|.|+.||.|++.+++. .+ +. +
T Consensus 1104 vt~~-----~~~----~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1104 VTMC-----GNG----DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred EEec-----cCC----CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc
Confidence 8886 555 7888889999999998864 10 00 0
Q ss_pred ---------------EEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEec-CCCCCcEEEEEcC
Q 000673 616 ---------------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-GHPNYPAKVVWDC 679 (1358)
Q Consensus 616 ---------------~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~-gH~~~V~~v~~sp 679 (1358)
++....|.|++++.+|. +++++.|..-|.+.+||++-+.++.... ++..++..+..+|
T Consensus 1175 iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~------~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1175 IVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW------CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred eEEecchhhhhHHhhhcCccccceeEEEecCC------ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 00112366888888877 8899999999999999999888876542 3346788888777
Q ss_pred CCC---EEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeeccc---ccceeecceecCcccccCCccc
Q 000673 680 PRG---YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGI---SMNSISGSVLNGNTSVSSLLLP 753 (1358)
Q Consensus 680 d~~---~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~---~~~~~sGs~l~g~~~~s~~l~~ 753 (1358)
..+ ..++++ +. ..+-|-+|++.+|.+-+++-.-........+.+.. .+....|- .+|--...+-++.
T Consensus 1249 ~~~~~S~~vs~~-----~~-~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~-~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1249 TYPQESVSVSAG-----SS-SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGI-SCGVCEKNGFLLT 1321 (1431)
T ss_pred cCCCCceEEEec-----cc-CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccce-eeecccCCceeee
Confidence 544 555432 21 23799999999998888876543333333233221 01111111 1222223344455
Q ss_pred cccCCcEEEEeCC
Q 000673 754 IHEDGTFRQSQIQ 766 (1358)
Q Consensus 754 ~~~D~tvr~W~~~ 766 (1358)
...|..+|.||..
T Consensus 1322 ggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1322 GGSDMKIRKWDPT 1334 (1431)
T ss_pred cCCccceeeccCC
Confidence 5569999999864
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.68 E-value=3.8e-05 Score=86.93 Aligned_cols=96 Identities=18% Similarity=0.293 Sum_probs=83.0
Q ss_pred cCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcE-EEEeCCCC
Q 000673 533 FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSI-RIWDLGSG 611 (1358)
Q Consensus 533 ~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI-~lWDl~sg 611 (1358)
..|+|.+++ ..+.+++..+..|.+.+-||+|+ +|| .+|+|+|.-||| |++.+.+|
T Consensus 151 t~GdV~l~d---------------~~nl~~v~~I~aH~~~lAalafs-----~~G----~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 151 TSGDVVLFD---------------TINLQPVNTINAHKGPLAALAFS-----PDG----TLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCceEEEEE---------------cccceeeeEEEecCCceeEEEEC-----CCC----CEEEEeccCceEEEEEEcCCc
Confidence 368888843 44566888999999999999998 899 999999999985 79999999
Q ss_pred cEEEEEecCCC--cEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCC
Q 000673 612 NLITVMHHHVA--PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1358)
Q Consensus 612 ~~l~~~~~H~~--~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~ 658 (1358)
+.+..|+.-.. .|.+++|+|+ +++|++.|..++|.++-+++
T Consensus 207 ~kl~eFRRG~~~~~IySL~Fs~d------s~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 207 QKLYEFRRGTYPVSIYSLSFSPD------SQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cEeeeeeCCceeeEEEEEEECCC------CCeEEEecCCCeEEEEEecc
Confidence 99999975443 5789999999 89999999999999998864
No 205
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.66 E-value=2.9e-07 Score=115.08 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=113.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEE-EecCCCC
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-MFPGHPN 670 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~-~l~gH~~ 670 (1358)
-++++|+.-+.|.+|+...-+.-..+.||.+.+.++.++-| |.+++++|+|+++|+|++++.+... ..-||+.
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d------g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD------GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccC------CcEEEEEecCcceeeeecccccccCcccccccc
Confidence 69999999999999998743333468899999999999999 9999999999999999999998876 6778999
Q ss_pred CcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCC
Q 000673 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSL 750 (1358)
Q Consensus 671 ~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~ 750 (1358)
+|+.++|+|. .+++++. |.+.++|+.. ++.+.++.+|...-+--..-+......++|.
T Consensus 220 Rvw~~~~~~n--~i~t~ge--------dctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g----------- 277 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGE--------DCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG----------- 277 (967)
T ss_pred eeEEEEeccc--eeEEecc--------ceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeec-----------
Confidence 9999999998 7885443 4999999764 6666689999865543323333333344443
Q ss_pred ccccccCCcEEEEeCCC
Q 000673 751 LLPIHEDGTFRQSQIQN 767 (1358)
Q Consensus 751 l~~~~~D~tvr~W~~~~ 767 (1358)
.|+++|.|++..
T Consensus 278 -----~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 278 -----NDSTLKLWDLNG 289 (967)
T ss_pred -----cCcchhhhhhhc
Confidence 499999998753
No 206
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.65 E-value=6.1e-07 Score=110.54 Aligned_cols=206 Identities=16% Similarity=0.116 Sum_probs=136.1
Q ss_pred ccccccCCccccccccCCCC--CCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQ--AGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASL 555 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~--~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~ 555 (1358)
+..+...+.+-+|++..... ...+......|..+|+++..+.+.. +.-+++++.||.|..|..+......... .-
T Consensus 258 l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~--~~~f~s~ssDG~i~~W~~~~l~~P~e~~-~~ 334 (555)
T KOG1587|consen 258 LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH--NTEFFSLSSDGSICSWDTDMLSLPVEGL-LL 334 (555)
T ss_pred EEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC--CCceEEEecCCcEeeeeccccccchhhc-cc
Confidence 44455667777888765543 2233333456788888876554322 2348999999999998655433210000 00
Q ss_pred ccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEE---EeCCCCc-----EEEEEecCCCcEEEE
Q 000673 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI---WDLGSGN-----LITVMHHHVAPVRQI 627 (1358)
Q Consensus 556 d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~l---WDl~sg~-----~l~~~~~H~~~V~~l 627 (1358)
+... .....+ .-...++++.|.|. +...++.|+.+|.|.- ++...+. ....+..|.++|+++
T Consensus 335 ~~~~-~~~~~~-~~~~~~t~~~F~~~--------~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v 404 (555)
T KOG1587|consen 335 ESKK-HKGQQS-SKAVGATSLKFEPT--------DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV 404 (555)
T ss_pred cccc-cccccc-ccccceeeEeeccC--------CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence 0000 000011 12356899999852 2378999999999876 3443332 234667789999999
Q ss_pred EeCCCCCCCCCCCeEEEEeCCCcEEEEECC-CCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 628 ILSPPQTEHPWSDCFLSVGEDFSVALASLE-TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 628 ~~spd~~~~~~g~~l~S~s~D~tV~lwdl~-~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
.++|=. -..|++++ |-+|+||... ...++..+..+...+++++|+|...-+. .+.|.||.+.+||+
T Consensus 405 ~~nPF~-----~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF-------~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 405 SRNPFY-----PKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF-------ATVDGDGNLDIWDL 471 (555)
T ss_pred ecCCCc-----cceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE-------EEEcCCCceehhhh
Confidence 999872 24555555 9999999988 7788888888888899999999987666 35666899999999
Q ss_pred CCC
Q 000673 707 KTG 709 (1358)
Q Consensus 707 ~tg 709 (1358)
...
T Consensus 472 l~~ 474 (555)
T KOG1587|consen 472 LQD 474 (555)
T ss_pred hcc
Confidence 753
No 207
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.64 E-value=1.2e-06 Score=104.15 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=111.2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCC
Q 000673 591 NEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668 (1358)
Q Consensus 591 ~~~L~Sgs~D~tI~lWDl~sg~~l~~~~--~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH 668 (1358)
...++=|-.-|.|.++++..|+.-.++. .|-++|+++.++.+ -.||.|++.|..+.+|+..+++.++.+...
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~------~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~ 143 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQR------LGCIYSVGADLKVVYILEKEKVIIRIWKEQ 143 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccc------cCceEecCCceeEEEEecccceeeeeeccC
Confidence 3578889999999999999999888887 58999999999887 689999999999999999999999999988
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeee
Q 000673 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFC 728 (1358)
Q Consensus 669 ~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~ 728 (1358)
..-+.+++.+||+..+++++ ++|++||+++++.+++|+||.+.|-.+.|-
T Consensus 144 ~~~~~sl~is~D~~~l~~as----------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS----------RQIKVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred CCccceEEEcCCCCEEEecc----------ceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence 88899999999999998543 799999999999999999999999887665
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.64 E-value=1.1e-07 Score=110.49 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=126.1
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
++..+.||.+.+.. +.++..+....|.+.|.|-.|+ ||| .-|+|.++||.|++|.
T Consensus 78 ~~i~s~DGkf~il~----------------k~~rVE~sv~AH~~A~~~gRW~-----~dG----tgLlt~GEDG~iKiWS 132 (737)
T KOG1524|consen 78 LLICSNDGRFVILN----------------KSARVERSISAHAAAISSGRWS-----PDG----AGLLTAGEDGVIKIWS 132 (737)
T ss_pred EEEEcCCceEEEec----------------ccchhhhhhhhhhhhhhhcccC-----CCC----ceeeeecCCceEEEEe
Confidence 56778999998832 2344556778999999999998 888 8999999999999998
Q ss_pred CCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEE
Q 000673 608 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACL 687 (1358)
Q Consensus 608 l~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g 687 (1358)
++|-+..++.....+|.|++|.|+. .+.+.+.+. .+.+=.+.....+.....|.+-|.++.|+|..+.+++|
T Consensus 133 -rsGMLRStl~Q~~~~v~c~~W~p~S-----~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 133 -RSGMLRSTVVQNEESIRCARWAPNS-----NSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASG 204 (737)
T ss_pred -ccchHHHHHhhcCceeEEEEECCCC-----CceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCccccceeec
Confidence 5677666677778899999999993 344444443 34444555555556678899999999999999999954
Q ss_pred ecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecc
Q 000673 688 CRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKG 730 (1358)
Q Consensus 688 ~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~ 730 (1358)
+. |...+|||.. |..+..-..|.-.++++.|.++
T Consensus 205 GE--------D~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 205 GE--------DFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred CC--------ceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence 43 4899999985 7777777889889999888765
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.62 E-value=3.5e-08 Score=113.11 Aligned_cols=175 Identities=15% Similarity=0.181 Sum_probs=131.7
Q ss_pred cEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCcc
Q 000673 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSF 590 (1358)
Q Consensus 511 ~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~ 590 (1358)
.|..+.|++.... |++++..|-+.. .|+.+|+.+..+.--.+.+..+.-+| -.
T Consensus 211 ~v~rLeFLPyHfL----L~~~~~~G~L~Y---------------~DVS~GklVa~~~t~~G~~~vm~qNP-----~N--- 263 (545)
T KOG1272|consen 211 RVARLEFLPYHFL----LVAASEAGFLKY---------------QDVSTGKLVASIRTGAGRTDVMKQNP-----YN--- 263 (545)
T ss_pred chhhhcccchhhe----eeecccCCceEE---------------EeechhhhhHHHHccCCccchhhcCC-----cc---
Confidence 4555554444443 888888887766 24668888888887788888888775 22
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000673 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1358)
Q Consensus 591 ~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~ 670 (1358)
.++-.|...|+|-+|.-.+.+++..+-.|.++|.+|++.|+ |++++|.+.|+.++|||++....+.++.. ..
T Consensus 264 -aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~------G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~ 335 (545)
T KOG1272|consen 264 -AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRG------GRYMATTGLDRKVKIWDLRNFYQLHTYRT-PH 335 (545)
T ss_pred -ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCC------CcEEeecccccceeEeeeccccccceeec-CC
Confidence 68999999999999999999999999999999999999999 99999999999999999998887666654 33
Q ss_pred CcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEE-CCC--CeEEEEEeCCC--CceEEEeeecc
Q 000673 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD-VKT--GARERVLRGTA--SHSMFDHFCKG 730 (1358)
Q Consensus 671 ~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd-~~t--g~~~~~l~GH~--~~v~~~~~~~~ 730 (1358)
....+++|..| .|+++ .+ ..|.||. .-. +.....+..|. +.|..+.||+-
T Consensus 336 ~a~~ls~Sqkg-lLA~~------~G---~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 336 PASNLSLSQKG-LLALS------YG---DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY 390 (545)
T ss_pred Ccccccccccc-ceeee------cC---CeeeeehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence 56788888554 45532 22 4899994 322 23333333443 57778889973
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.62 E-value=3.8e-05 Score=85.44 Aligned_cols=101 Identities=21% Similarity=0.403 Sum_probs=83.6
Q ss_pred EEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCc-EEEEeCC
Q 000673 531 GFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCS-IRIWDLG 609 (1358)
Q Consensus 531 G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~t-I~lWDl~ 609 (1358)
|.+-|.|.|.++... ..+ +-..+..|...|.|++.+ .+| .++||+|..|| |||||..
T Consensus 155 g~k~GqvQi~dL~~~------------~~~-~p~~I~AH~s~Iacv~Ln-----~~G----t~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 155 GFKTGQVQIVDLAST------------KPN-APSIINAHDSDIACVALN-----LQG----TLVATASTKGTLIRIFDTE 212 (346)
T ss_pred CCccceEEEEEhhhc------------CcC-CceEEEcccCceeEEEEc-----CCc----cEEEEeccCcEEEEEEEcC
Confidence 556799999776521 111 236778999999999997 778 99999999998 6899999
Q ss_pred CCcEEEEEecC--CCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC
Q 000673 610 SGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1358)
Q Consensus 610 sg~~l~~~~~H--~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~ 659 (1358)
+|+.+..|+.- ...|.|++|+|+ +.++|..|+-||+.++.++..
T Consensus 213 ~g~~l~E~RRG~d~A~iy~iaFSp~------~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 213 DGTLLQELRRGVDRADIYCIAFSPN------SSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCcEeeeeecCCchheEEEEEeCCC------ccEEEEEcCCCeEEEEEeecC
Confidence 99999988743 346999999999 899999999999999998763
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.61 E-value=1.6e-06 Score=97.73 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=108.2
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEe---cCCCCEEEEEEeccccCCCCCccCcEEEE-Ee-CCCc
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL---GHTGAVLCLAAHRMVGTAKGWSFNEVLVS-GS-MDCS 602 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~---gH~~~V~~l~~sp~~~~~dg~~~~~~L~S-gs-~D~t 602 (1358)
|+..-+ +.|+|++ +++.+.++++. .|...+.++.++ .++ .+++- ++ .-|.
T Consensus 100 LvV~Le-e~IyIyd---------------I~~MklLhTI~t~~~n~~gl~AlS~n-----~~n----~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 100 LVVCLE-ESIYIYD---------------IKDMKLLHTIETTPPNPKGLCALSPN-----NAN----CYLAYPGSTTSGD 154 (391)
T ss_pred EEEEEc-ccEEEEe---------------cccceeehhhhccCCCccceEeeccC-----CCC----ceEEecCCCCCce
Confidence 555444 4599944 44555565553 355556666655 222 45543 22 3578
Q ss_pred EEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcE-EEEECCCCcEEEEecCCCC--CcEEEEEcC
Q 000673 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV-ALASLETLRVERMFPGHPN--YPAKVVWDC 679 (1358)
Q Consensus 603 I~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV-~lwdl~~~~~~~~l~gH~~--~V~~v~~sp 679 (1358)
|.+||+.+-+....+..|.+++-+++|+|+ |.++|++|..|+| |++++.+|+.+..|+.-.. .|++++|+|
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~------G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPD------GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCC------CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence 999999999999999999999999999999 9999999999875 8999999999999975433 467999999
Q ss_pred CCCEEEEEecCCccccCCCCeEEEEECCCCe
Q 000673 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1358)
Q Consensus 680 d~~~L~~g~~d~sgssD~DgtV~vWd~~tg~ 710 (1358)
++++|++. ++ -++|+|+.+++-.
T Consensus 229 ds~~L~~s-------S~-TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 229 DSQFLAAS-------SN-TETVHIFKLEKVS 251 (391)
T ss_pred CCCeEEEe-------cC-CCeEEEEEecccc
Confidence 99999853 22 2799999997644
No 212
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.61 E-value=2e-05 Score=93.19 Aligned_cols=193 Identities=11% Similarity=0.080 Sum_probs=110.3
Q ss_pred cCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceE
Q 000673 483 CQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVS 562 (1358)
Q Consensus 483 ~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~ 562 (1358)
..+.+.+|+.............+.+. .....+.+.++..+ .+++...++.|.+++++..+... ......
T Consensus 100 ~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~---l~v~~~~~~~v~v~d~~~~g~l~-------~~~~~~ 168 (330)
T PRK11028 100 NANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRT---LWVPCLKEDRIRLFTLSDDGHLV-------AQEPAE 168 (330)
T ss_pred CCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCE---EEEeeCCCCEEEEEEECCCCccc-------ccCCCc
Confidence 46677788775322111122222221 22333444444444 13555667899997775321100 000000
Q ss_pred EEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeC-CCcEEEEeCCC--Cc--EEEEEecC------CCcEEEEEeCC
Q 000673 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGS--GN--LITVMHHH------VAPVRQIILSP 631 (1358)
Q Consensus 563 ~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~-D~tI~lWDl~s--g~--~l~~~~~H------~~~V~~l~~sp 631 (1358)
.....| .....+.|+ ||| ++++++.. +++|.+||++. ++ .+..+..+ ......+.++|
T Consensus 169 ~~~~~g--~~p~~~~~~-----pdg----~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 169 VTTVEG--AGPRHMVFH-----PNQ----QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred eecCCC--CCCceEEEC-----CCC----CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 111112 235678887 788 77777765 99999999973 33 34444322 11234688999
Q ss_pred CCCCCCCCCeEEEEe-CCCcEEEEECCCCc----EEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 632 PQTEHPWSDCFLSVG-EDFSVALASLETLR----VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 632 d~~~~~~g~~l~S~s-~D~tV~lwdl~~~~----~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
+ +++++++. .+++|.+|+++... .+...... ..+..+.|+|+|++|+++.. .+++|.+|++
T Consensus 238 d------g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~-------~~~~v~v~~~ 303 (330)
T PRK11028 238 D------GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQ-------KSHHISVYEI 303 (330)
T ss_pred C------CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEc-------cCCcEEEEEE
Confidence 9 78777775 47999999986533 22332221 35678999999999997543 2489999987
Q ss_pred C--CCeE
Q 000673 707 K--TGAR 711 (1358)
Q Consensus 707 ~--tg~~ 711 (1358)
+ +|.+
T Consensus 304 ~~~~g~l 310 (330)
T PRK11028 304 DGETGLL 310 (330)
T ss_pred cCCCCcE
Confidence 4 5554
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.59 E-value=0.00033 Score=84.00 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=61.9
Q ss_pred ccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEE----eCCCcEEEEeCCCCcEEEEEecCC-CcEEEEEeC
Q 000673 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG----SMDCSIRIWDLGSGNLITVMHHHV-APVRQIILS 630 (1358)
Q Consensus 556 d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sg----s~D~tI~lWDl~sg~~l~~~~~H~-~~V~~l~~s 630 (1358)
+..+.+.++.+....+. .-+..| ||+ +++... ....+|.++|..+.+...++.... ..+..+.|+
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~th-----P~s----~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~ 324 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTH-----PDS----RYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN 324 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE-------TT-----SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-
T ss_pred hhhcCeEEEEEECCCCc-ceeecC-----CCC----ccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEEC
Confidence 34455677777766566 666666 777 777666 556899999999998888875432 358999999
Q ss_pred CCCCCCCCCCeE-EEEeCCC-cEEEEECCCCcEEEEec
Q 000673 631 PPQTEHPWSDCF-LSVGEDF-SVALASLETLRVERMFP 666 (1358)
Q Consensus 631 pd~~~~~~g~~l-~S~s~D~-tV~lwdl~~~~~~~~l~ 666 (1358)
++ |+.+ +|.-.++ .|.++|..+.+.+..++
T Consensus 325 ~d------G~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 325 PD------GKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TT------SSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CC------CCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99 6644 4444444 79999999999998887
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.6e-06 Score=97.06 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=121.1
Q ss_pred cccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCC---EEEEEEcCCcEEEEEecCcccCCCCCC
Q 000673 477 KSDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNSPGA 553 (1358)
Q Consensus 477 ~l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~---~lv~G~~dG~I~i~~~~~~~~~~~~~~ 553 (1358)
+++....+..+++.+.....+.. + -+.....|+|++ |.|. -++.|+..| |.+|..+.........+
T Consensus 112 ~fava~nddvVriy~ksst~pt~-L---ks~sQrnvtcla------wRPlsaselavgCr~g-IciW~~s~tln~~r~~~ 180 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSSTCPTK-L---KSVSQRNVTCLA------WRPLSASELAVGCRAG-ICIWSDSRTLNANRNIR 180 (445)
T ss_pred hhhhhccCcEEEEeccCCCCCce-e---cchhhcceeEEE------eccCCcceeeeeecce-eEEEEcCcccccccccc
Confidence 34555566667766655432221 1 012234678876 6665 388998876 67766554332211000
Q ss_pred ccccCCceE--EEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeC-CCcEEEEeCCCCcEEEEEecCCCcEEEEEeC
Q 000673 554 SLKVNSHVS--RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DCSIRIWDLGSGNLITVMHHHVAPVRQIILS 630 (1358)
Q Consensus 554 ~~d~~t~~~--~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~-D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~s 630 (1358)
+.+..+ +....|| ..|++++|. +|| ..++++|- |..|+|||.++|.++....--.+.+.-+.|+
T Consensus 181 ---~~s~~~~qvl~~pgh-~pVtsmqwn-----~dg----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS 247 (445)
T KOG2139|consen 181 ---MMSTHHLQVLQDPGH-NPVTSMQWN-----EDG----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS 247 (445)
T ss_pred ---cccccchhheeCCCC-ceeeEEEEc-----CCC----CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence 111112 2234567 799999998 788 88888875 5689999999988765544445779999999
Q ss_pred CCCCCCCCCCeEEEEeCCCcEEEEE-CCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEe
Q 000673 631 PPQTEHPWSDCFLSVGEDFSVALAS-LETLRVERMFPGHPNYPAKVVWDCPRGYIACLC 688 (1358)
Q Consensus 631 pd~~~~~~g~~l~S~s~D~tV~lwd-l~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~ 688 (1358)
|| |+++.++.-|+..++|+ .++..+.+-.-+. ++|...+|+|+|++|+..|
T Consensus 248 Pd------gd~lfaAt~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 248 PD------GDVLFAATCDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred CC------CCEEEEecccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEE
Confidence 99 89999999999999995 4455555555444 3899999999999998654
No 215
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=6.4e-07 Score=100.38 Aligned_cols=171 Identities=11% Similarity=0.038 Sum_probs=128.1
Q ss_pred ecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEec-CCCCEEEEEEeccc
Q 000673 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMV 582 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~g-H~~~V~~l~~sp~~ 582 (1358)
.+.+|.+.|.++.|..+..| |++|+.|-.+++|..+...- -++.+++..... |...|.||+|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~----L~SGGDD~~~~~W~~de~~~---------~k~~KPI~~~~~~H~SNIF~L~F~--- 114 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRF----LASGGDDMHGRVWNVDELMV---------RKTPKPIGVMEHPHRSNIFSLEFD--- 114 (609)
T ss_pred hhhhhccccceeeeccCCeE----EeecCCcceeeeechHHHHh---------hcCCCCceeccCccccceEEEEEc---
Confidence 35789999999999999999 99999999999976542211 123455555433 55899999996
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecC--CCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH--VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H--~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~ 660 (1358)
.. +..+.||+.|++|++-|+.+.+.+..+... .+.|..+..+|. .+.|++.+.|+.|.+||.+...
T Consensus 115 --~~----N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~------DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 115 --LE----NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT------DNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred --cC----CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC------CceEEEEecCceEEEEeccCCC
Confidence 22 379999999999999999999988887542 358999999998 7999999999999999998765
Q ss_pred -EEEE--ecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 661 -VERM--FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 661 -~~~~--l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
.+.. ..........+-|+|....|+. .+..-+-+.+||.+..
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~-------~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETPALIL-------VNSETGGPNVFDRRMQ 227 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCceeEE-------eccccCCCCceeeccc
Confidence 2211 1222334578999998776652 2222367889998753
No 216
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.57 E-value=3e-06 Score=92.30 Aligned_cols=137 Identities=12% Similarity=0.139 Sum_probs=90.6
Q ss_pred EEEEeCC-CCcEEEEEec-CCCcEEEEEeCCCCCCCCCCCeEEE--EeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000673 603 IRIWDLG-SGNLITVMHH-HVAPVRQIILSPPQTEHPWSDCFLS--VGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1358)
Q Consensus 603 I~lWDl~-sg~~l~~~~~-H~~~V~~l~~spd~~~~~~g~~l~S--~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~s 678 (1358)
..+|.++ .+.....+.. ..++|.+++|+|+ |+.|+. |..++.|.+||++ ++.+..+.. ..+..|.|+
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~------g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~~~n~i~ws 109 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPN------GNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--QPRNTISWS 109 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcC------CCEEEEEEccCCcccEEEcCc-ccEeEeecC--CCceEEEEC
Confidence 3444442 2233444433 3567999999999 776544 4567899999997 777777753 467899999
Q ss_pred CCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCC
Q 000673 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDG 758 (1358)
Q Consensus 679 pd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~ 758 (1358)
|+|++|++++.+ .. .|.|.+||+++.+.+...... .++.+.|++... ..++.+ ..-....|+
T Consensus 110 P~G~~l~~~g~~---n~--~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr-~~~ta~----------t~~r~~~dn 171 (194)
T PF08662_consen 110 PDGRFLVLAGFG---NL--NGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGR-YLATAT----------TSPRLRVDN 171 (194)
T ss_pred CCCCEEEEEEcc---CC--CcEEEEEECCCCEEeeccccC--cEEEEEEcCCCC-EEEEEE----------eccceeccc
Confidence 999999987643 22 378999999999888776533 345566765322 122211 111233489
Q ss_pred cEEEEeCC
Q 000673 759 TFRQSQIQ 766 (1358)
Q Consensus 759 tvr~W~~~ 766 (1358)
.+++|+..
T Consensus 172 g~~Iw~~~ 179 (194)
T PF08662_consen 172 GFKIWSFQ 179 (194)
T ss_pred cEEEEEec
Confidence 99999753
No 217
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=2.9e-05 Score=94.22 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=85.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC----------CCcEEEEECCCCcE
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE----------DFSVALASLETLRV 661 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~----------D~tV~lwdl~~~~~ 661 (1358)
.+++.|...|||-+.|+.++..-+.|..|++.|.++.|-.. ..++|.+. -+.+.+-|+++|..
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~-------sslvSfsys~~n~~sg~vrN~l~vtdLrtGls 510 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGN-------SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS 510 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccc-------eeEEEeeeccccccccceeeeEEEEEcccccc
Confidence 58899999999999999999999999999999999999765 34555432 24567889999865
Q ss_pred E--EEecCC-CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEE
Q 000673 662 E--RMFPGH-PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1358)
Q Consensus 662 ~--~~l~gH-~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~ 714 (1358)
. +.+++. ..+|..+..+.-++||+....+ .-+-+||+++-.+++.
T Consensus 511 k~fR~l~~~despI~~irvS~~~~yLai~Fr~--------~plEiwd~kt~~~lr~ 558 (1062)
T KOG1912|consen 511 KRFRGLQKPDESPIRAIRVSSSGRYLAILFRR--------EPLEIWDLKTLRMLRL 558 (1062)
T ss_pred cccccCCCCCcCcceeeeecccCceEEEEecc--------cchHHHhhccchHHHH
Confidence 3 333433 4688999999999999987654 7899999987665544
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.55 E-value=1.1e-06 Score=97.43 Aligned_cols=159 Identities=12% Similarity=0.061 Sum_probs=122.1
Q ss_pred CCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCC
Q 000673 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1358)
Q Consensus 509 ~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~ 588 (1358)
-.+|+|-++.++... ++.+..+.+|.|+..... .-.+..++|..|...|+++.|. |.+
T Consensus 10 ~~pitchAwn~drt~----iAv~~~~~evhiy~~~~~------------~~w~~~htls~Hd~~vtgvdWa-----p~s- 67 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQ----IAVSPNNHEVHIYSMLGA------------DLWEPAHTLSEHDKIVTGVDWA-----PKS- 67 (361)
T ss_pred cCceeeeeecCCCce----EEeccCCceEEEEEecCC------------CCceeceehhhhCcceeEEeec-----CCC-
Confidence 357888775555443 899999999999776521 1145788999999999999998 555
Q ss_pred ccCcEEEEEeCCCcEEEEeC-CCC--cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEE---
Q 000673 589 SFNEVLVSGSMDCSIRIWDL-GSG--NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE--- 662 (1358)
Q Consensus 589 ~~~~~L~Sgs~D~tI~lWDl-~sg--~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~--- 662 (1358)
+.|++|+.|...++|.. ..+ ++.-.+..|...++++.|+|. ++.|+.||.-+.|.+|=++.-.--
T Consensus 68 ---nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~------enkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 68 ---NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPK------ENKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred ---CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCc------CceEEeccCccEEEEEEEecccceehh
Confidence 89999999999999998 333 344556678899999999999 899999999999999987643211
Q ss_pred -EEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 663 -RMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 663 -~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
+.-..+.+.|.++.|+|++-+|+.| +.| +..||+..
T Consensus 139 KhikkPirStv~sldWhpnnVLlaaG------s~D--~k~rVfSa 175 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNNVLLAAG------STD--GKCRVFSA 175 (361)
T ss_pred hhhCCccccceeeeeccCCcceeccc------ccC--cceeEEEE
Confidence 1223455678999999999999954 443 88888854
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.54 E-value=2.5e-06 Score=107.91 Aligned_cols=150 Identities=18% Similarity=0.198 Sum_probs=114.8
Q ss_pred CceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC-------cEEEEEecCCCcEEEEEeCC
Q 000673 559 SHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-------NLITVMHHHVAPVRQIILSP 631 (1358)
Q Consensus 559 t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg-------~~l~~~~~H~~~V~~l~~sp 631 (1358)
.|..+..|..|+..|..++.++ +++ .+++|||.||+||+||+..- +...++....+++.++.+.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~----~~~----s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSS----EHT----SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred cceEeehhhhccccccceeecC----CCC----ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence 5778888999999999999884 555 89999999999999998631 23344544577899999988
Q ss_pred CCCCCCCCCeEEEEeCCCcEEEEECCCC-------------------cEEE---------E-------------------
Q 000673 632 PQTEHPWSDCFLSVGEDFSVALASLETL-------------------RVER---------M------------------- 664 (1358)
Q Consensus 632 d~~~~~~g~~l~S~s~D~tV~lwdl~~~-------------------~~~~---------~------------------- 664 (1358)
. ++.+|.++.||.|++.+++-. ..+. .
T Consensus 1109 ~------~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1109 N------GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred C------CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 8 899999999999999987641 0000 0
Q ss_pred --------ecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe-CCCCceEEEeeecc
Q 000673 665 --------FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTASHSMFDHFCKG 730 (1358)
Q Consensus 665 --------l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~-GH~~~v~~~~~~~~ 730 (1358)
++-..+.|++++.+|.+.+++.| ++. |.+-+||+|=+.++..++ +|.+.+..+..|+.
T Consensus 1183 ~~~~w~lk~~~~hG~vTSi~idp~~~WlviG------ts~--G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLVTSIVIDPWCNWLVIG------TSR--GQLVLWDLRFRVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred hhhHHhhhcCccccceeEEEecCCceEEEEe------cCC--ceEEEEEeecCceeecccCcccCCcceEEeecc
Confidence 00112468999999999999964 444 899999999999988875 66778887767753
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=2.9e-06 Score=99.83 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=117.1
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
|.+++...+|+- + +++.|..+..|.--.+.++++..++.| .+|+.|+.||.|-.||
T Consensus 148 ly~~gsg~evYR--l-------------NLEqGrfL~P~~~~~~~lN~v~in~~h---------gLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 148 LYLVGSGSEVYR--L-------------NLEQGRFLNPFETDSGELNVVSINEEH---------GLLACGTEDGVVEFWD 203 (703)
T ss_pred EEEeecCcceEE--E-------------EccccccccccccccccceeeeecCcc---------ceEEecccCceEEEec
Confidence 556656666665 2 355677777787778999999998643 5899999999999999
Q ss_pred CCCCcEEEEEec------CCC-----cEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCC--CCcEE
Q 000673 608 LGSGNLITVMHH------HVA-----PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP--NYPAK 674 (1358)
Q Consensus 608 l~sg~~l~~~~~------H~~-----~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~--~~V~~ 674 (1358)
.++.....++.. |.+ .|+++.|+.+ |-.++.|..+|.|.+||+++.+++.. ..|. -+|..
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~------gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~ 276 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD------GLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKK 276 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCC------ceeEEeeccCCcEEEEEcccCCceee-cccCCccceee
Confidence 988776655542 333 3999999988 78999999999999999999988653 3353 46789
Q ss_pred EEEcCC--CCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCC
Q 000673 675 VVWDCP--RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1358)
Q Consensus 675 v~~spd--~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~ 720 (1358)
+.|.+. ++.++ +.|. ..++|||-.+|+....+....+
T Consensus 277 l~~~~~~~q~~v~--------S~Dk-~~~kiWd~~~Gk~~asiEpt~~ 315 (703)
T KOG2321|consen 277 LDWQDTDQQNKVV--------SMDK-RILKIWDECTGKPMASIEPTSD 315 (703)
T ss_pred ecccccCCCceEE--------ecch-HHhhhcccccCCceeeccccCC
Confidence 999775 45565 4553 7999999999998877765443
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.47 E-value=5.8e-06 Score=91.74 Aligned_cols=177 Identities=13% Similarity=0.101 Sum_probs=119.4
Q ss_pred CCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEE
Q 000673 484 QDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR 563 (1358)
Q Consensus 484 ~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~ 563 (1358)
.+.+-+||....++..++.+ ...|.++. +.++.|+.. -...|+++.|..+.+. +
T Consensus 74 pNkviIWDD~k~~~i~el~f-----~~~I~~V~------l~r~riVvv-l~~~I~VytF~~n~k~--------------l 127 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSF-----NSEIKAVK------LRRDRIVVV-LENKIYVYTFPDNPKL--------------L 127 (346)
T ss_pred CceEEEEecccCcEEEEEEe-----ccceeeEE------EcCCeEEEE-ecCeEEEEEcCCChhh--------------e
Confidence 34566788655544332222 24566644 666667776 4568999888633221 2
Q ss_pred EEEec--CCCCEEEEEEeccccCCCCCccCcEEE-EEeCCCcEEEEeCCCCcE--EEEEecCCCcEEEEEeCCCCCCCCC
Q 000673 564 QYFLG--HTGAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDCSIRIWDLGSGNL--ITVMHHHVAPVRQIILSPPQTEHPW 638 (1358)
Q Consensus 564 ~~l~g--H~~~V~~l~~sp~~~~~dg~~~~~~L~-Sgs~D~tI~lWDl~sg~~--l~~~~~H~~~V~~l~~spd~~~~~~ 638 (1358)
+.+.- ....+.++. |. ....+|| -|-.-|.|+|-|+..-+. -..+..|.+.|.|++++.+
T Consensus 128 ~~~et~~NPkGlC~~~--~~-------~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~------ 192 (346)
T KOG2111|consen 128 HVIETRSNPKGLCSLC--PT-------SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ------ 192 (346)
T ss_pred eeeecccCCCceEeec--CC-------CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC------
Confidence 22211 111222222 10 0113333 344568899999987665 3678899999999999999
Q ss_pred CCeEEEEeCCCc-EEEEECCCCcEEEEecCC--CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 639 SDCFLSVGEDFS-VALASLETLRVERMFPGH--PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 639 g~~l~S~s~D~t-V~lwdl~~~~~~~~l~gH--~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
|..+||+|..|| |||||.++|+.++.++.- ...|++++|+|+..+|++ ++|. |+++|+.++..
T Consensus 193 Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav-------sSdK-gTlHiF~l~~~ 258 (346)
T KOG2111|consen 193 GTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV-------SSDK-GTLHIFSLRDT 258 (346)
T ss_pred ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE-------EcCC-CeEEEEEeecC
Confidence 899999999998 589999999999998643 236899999999999995 5564 99999998753
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=6.6e-06 Score=101.05 Aligned_cols=175 Identities=14% Similarity=0.102 Sum_probs=108.1
Q ss_pred CccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcC-C--cEEEEEecCcccCCCCCCccccCCce
Q 000673 485 DTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFS-G--EIEVIQFDLFERHNSPGASLKVNSHV 561 (1358)
Q Consensus 485 s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~d-G--~I~i~~~~~~~~~~~~~~~~d~~t~~ 561 (1358)
..+.+|+..... ...+..|...+.+..+.++..+ +++.+.+ + .|++|+ +.+++
T Consensus 184 ~~i~i~d~dg~~-----~~~lt~~~~~v~~p~wSPDG~~----la~~s~~~~~~~i~i~d---------------l~tg~ 239 (429)
T PRK01742 184 YEVRVADYDGFN-----QFIVNRSSQPLMSPAWSPDGSK----LAYVSFENKKSQLVVHD---------------LRSGA 239 (429)
T ss_pred EEEEEECCCCCC-----ceEeccCCCccccceEcCCCCE----EEEEEecCCCcEEEEEe---------------CCCCc
Confidence 345566654321 2334556667777664444443 7766543 2 466633 33443
Q ss_pred --EEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEE-eCCCcEEEE--eCCCCcEEEEEecCCCcEEEEEeCCCCCCC
Q 000673 562 --SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG-SMDCSIRIW--DLGSGNLITVMHHHVAPVRQIILSPPQTEH 636 (1358)
Q Consensus 562 --~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sg-s~D~tI~lW--Dl~sg~~l~~~~~H~~~V~~l~~spd~~~~ 636 (1358)
.+..+.+|. ..++|+ ||| +.|+.+ +.|+.+.|| |+.+++ +..+..|...+....|+||
T Consensus 240 ~~~l~~~~g~~---~~~~wS-----PDG----~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD---- 302 (429)
T PRK01742 240 RKVVASFRGHN---GAPAFS-----PDG----SRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPD---- 302 (429)
T ss_pred eEEEecCCCcc---CceeEC-----CCC----CEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCC----
Confidence 233344543 467897 888 766665 578876665 666555 4667777788899999999
Q ss_pred CCCCeEEEEe-CCCcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEE
Q 000673 637 PWSDCFLSVG-EDFSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1358)
Q Consensus 637 ~~g~~l~S~s-~D~tV~lwdl~~~-~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~ 714 (1358)
|+.++.++ .++...||+++.. .....+ ++.. ....|+|||++|+..+ . ..+.+||+.+|+....
T Consensus 303 --G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~------~---~~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 303 --GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMIN------G---DNVVKQDLTSGSTEVL 368 (429)
T ss_pred --CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEc------C---CCEEEEECCCCCeEEe
Confidence 78666554 5788888876532 222333 3443 4578999999998533 2 2466699999876543
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.42 E-value=2.6e-07 Score=106.12 Aligned_cols=133 Identities=16% Similarity=0.092 Sum_probs=112.8
Q ss_pred ceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCC
Q 000673 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1358)
Q Consensus 560 ~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g 639 (1358)
|..++.++.| ..|..|.|-|-| -+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|- .
T Consensus 200 GtElHClk~~-~~v~rLeFLPyH---------fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~------N 263 (545)
T KOG1272|consen 200 GTELHCLKRH-IRVARLEFLPYH---------FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY------N 263 (545)
T ss_pred CcEEeehhhc-Cchhhhcccchh---------heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc------c
Confidence 3356667665 678899997522 58999999999999999999999999888899999988887 6
Q ss_pred CeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 640 DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 640 ~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
..+..|...|+|.+|.....+++..+-.|.++|.+|+++++|+|+++.+. |+.++|||+++-..+.++.
T Consensus 264 aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~--------Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL--------DRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc--------ccceeEeeeccccccceee
Confidence 78899999999999999999999999999999999999999999996443 4999999999865444443
No 224
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.37 E-value=3.7e-06 Score=92.27 Aligned_cols=128 Identities=14% Similarity=-0.002 Sum_probs=99.1
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
++++-.+|.+.++.... .--+..+.+++|.-..+...|+ +...+++.|||.|+.+..||
T Consensus 136 i~vs~s~G~~~~v~~t~-------------~~le~vq~wk~He~E~Wta~f~--------~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 136 IFVSDSRGSISGVYETE-------------MVLEKVQTWKVHEFEAWTAKFS--------DKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred EEEEcCCCcEEEEecce-------------eeeeecccccccceeeeeeecc--------cCCCceEEecCCCceEEEEE
Confidence 77778888888654431 1122445788999999999997 33458999999999999999
Q ss_pred CC-CCcEEEE-EecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECC-CCcEEEEecCCCCCcEEEEEcCCCC
Q 000673 608 LG-SGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE-TLRVERMFPGHPNYPAKVVWDCPRG 682 (1358)
Q Consensus 608 l~-sg~~l~~-~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~-~~~~~~~l~gH~~~V~~v~~spd~~ 682 (1358)
++ .++.+.. -+.|...|.+|.-+|.. +.++++|+.|-.|++||.| -++++..-+- .+.|+.+.++|.-.
T Consensus 195 ~R~p~~~i~~n~kvH~~GV~SI~ss~~~-----~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 195 IRIPKTFIWHNSKVHTSGVVSIYSSPPK-----PTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIF 266 (339)
T ss_pred ecCCcceeeecceeeecceEEEecCCCC-----CceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhh
Confidence 99 4555544 56799999999888762 6799999999999999999 4677655443 36899999999654
No 225
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.33 E-value=4.7e-06 Score=92.44 Aligned_cols=189 Identities=13% Similarity=0.034 Sum_probs=134.6
Q ss_pred cccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCc
Q 000673 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1358)
Q Consensus 481 t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~ 560 (1358)
+..+..+++.+..+..+. +...+++.|...|+.+...+... .|+++++|..-++|... .+ .+.
T Consensus 28 ~~~~~evhiy~~~~~~~w-~~~htls~Hd~~vtgvdWap~sn----rIvtcs~drnayVw~~~-------~~-----~~W 90 (361)
T KOG1523|consen 28 SPNNHEVHIYSMLGADLW-EPAHTLSEHDKIVTGVDWAPKSN----RIVTCSHDRNAYVWTQP-------SG-----GTW 90 (361)
T ss_pred ccCCceEEEEEecCCCCc-eeceehhhhCcceeEEeecCCCC----ceeEccCCCCccccccC-------CC-----Cee
Confidence 344445555555544332 45567889999999976333322 49999999999996542 11 133
Q ss_pred eEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcE----EEEEecCCCcEEEEEeCCCCCCC
Q 000673 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL----ITVMHHHVAPVRQIILSPPQTEH 636 (1358)
Q Consensus 561 ~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~----l~~~~~H~~~V~~l~~spd~~~~ 636 (1358)
++.-+|..|...++|+.|+ |.+ +.++.||.-+.|.+|-++...- .+.-+-+...|++++|+|+
T Consensus 91 kptlvLlRiNrAAt~V~Ws-----P~e----nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn---- 157 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWS-----PKE----NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN---- 157 (361)
T ss_pred ccceeEEEeccceeeEeec-----CcC----ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC----
Confidence 4566777899999999998 666 8999999999999998864331 2233456778999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEC-----CC-------------CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCC
Q 000673 637 PWSDCFLSVGEDFSVALASL-----ET-------------LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAV 698 (1358)
Q Consensus 637 ~~g~~l~S~s~D~tV~lwdl-----~~-------------~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~D 698 (1358)
+-+++.||.|+..+++.. ++ |+.+..+....+++..+.|+|.|..|+-.+ . |
T Consensus 158 --nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~------H--d 227 (361)
T KOG1523|consen 158 --NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG------H--D 227 (361)
T ss_pred --cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec------C--C
Confidence 679999999999999973 21 123344445667899999999999998432 2 3
Q ss_pred CeEEEEECCCC
Q 000673 699 DVLFIWDVKTG 709 (1358)
Q Consensus 699 gtV~vWd~~tg 709 (1358)
.+|.+=|....
T Consensus 228 s~v~~~da~~p 238 (361)
T KOG1523|consen 228 STVSFVDAAGP 238 (361)
T ss_pred CceEEeecCCC
Confidence 78888777543
No 226
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.30 E-value=5e-05 Score=89.88 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=97.7
Q ss_pred EEEeeccCcccCCEEEEEE-cCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCc
Q 000673 514 SSMVISESFYAPYAIVYGF-FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNE 592 (1358)
Q Consensus 514 s~~~i~~~~~~p~~lv~G~-~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~ 592 (1358)
.+.+.++.++ ++++. .++.|.+++++..+. ..+....+.+ .....+++++ ||| +
T Consensus 84 ~i~~~~~g~~----l~v~~~~~~~v~v~~~~~~g~-----------~~~~~~~~~~-~~~~~~~~~~-----p~g----~ 138 (330)
T PRK11028 84 HISTDHQGRF----LFSASYNANCVSVSPLDKDGI-----------PVAPIQIIEG-LEGCHSANID-----PDN----R 138 (330)
T ss_pred EEEECCCCCE----EEEEEcCCCeEEEEEECCCCC-----------CCCceeeccC-CCcccEeEeC-----CCC----C
Confidence 3443444444 44443 478888876652211 0112233333 2345677787 777 5
Q ss_pred EE-EEEeCCCcEEEEeCCCCcEEE-------EEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC-CCcEEEEECCC--C--
Q 000673 593 VL-VSGSMDCSIRIWDLGSGNLIT-------VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFSVALASLET--L-- 659 (1358)
Q Consensus 593 ~L-~Sgs~D~tI~lWDl~sg~~l~-------~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~-D~tV~lwdl~~--~-- 659 (1358)
++ ++...+++|.+||+.+...+. .... ......++|+|+ |++++++.. +++|.+|+++. +
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pd------g~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPN------QQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCC------CCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 55 666678999999997633221 1111 234578999999 888877766 99999999973 3
Q ss_pred cEEEEecCC------CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 660 RVERMFPGH------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 660 ~~~~~l~gH------~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
+.++.+..+ ......+.++|+++++++++.. +++|.+|++.+.
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-------~~~I~v~~i~~~ 260 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-------ASLISVFSVSED 260 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-------CCeEEEEEEeCC
Confidence 334444322 1234468999999999975432 479999999653
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=2.3e-05 Score=89.15 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=102.3
Q ss_pred CEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCc-EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCc
Q 000673 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1358)
Q Consensus 572 ~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~-~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~t 650 (1358)
.++++.|-| +. ....|+++..-+.+|+||...++ ++..|.--..+++++...|. |+++.+|..-+.
T Consensus 204 W~tdi~Fl~-----g~--~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~------gn~Iy~gn~~g~ 270 (412)
T KOG3881|consen 204 WITDIRFLE-----GS--PNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS------GNFIYTGNTKGQ 270 (412)
T ss_pred eeccceecC-----CC--CCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC------CcEEEEecccch
Confidence 356677753 21 13799999999999999998764 67778777889999999999 899999999999
Q ss_pred EEEEECCCCcEEEE-ecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEE
Q 000673 651 VALASLETLRVERM-FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1358)
Q Consensus 651 V~lwdl~~~~~~~~-l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~ 713 (1358)
+..+|++.++.... +.|-.+.|++|..+|..+++++++.| +.|||+|+++.+++.
T Consensus 271 l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD--------RyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 271 LAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD--------RYVRIHDIKTRKLLH 326 (412)
T ss_pred hheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc--------eeEEEeecccchhhh
Confidence 99999999998866 88999999999999999999965553 999999999965543
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=3.5e-05 Score=87.74 Aligned_cols=191 Identities=15% Similarity=0.093 Sum_probs=133.6
Q ss_pred EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCC--CcEE
Q 000673 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--CSIR 604 (1358)
Q Consensus 527 ~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D--~tI~ 604 (1358)
.|+++-.+|.+.+|.... .|..+ .....+.-| ..+..+.-+| . .+.++++|+.. ..++
T Consensus 117 ~Litc~~sG~l~~~~~k~----------~d~hs-s~l~~la~g-~g~~~~r~~~----~----~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKS----------GDLHS-SKLIKLATG-PGLYDVRQTD----T----DPYIVATGGKENINELK 176 (412)
T ss_pred EEEEEecCCcEEEEeccC----------Ccccc-ccceeeecC-CceeeeccCC----C----CCceEecCchhccccee
Confidence 388889999999965321 01111 122333333 3444454442 1 23688889999 8999
Q ss_pred EEeCCCCcEEEEEecC---------CCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEE
Q 000673 605 IWDLGSGNLITVMHHH---------VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAK 674 (1358)
Q Consensus 605 lWDl~sg~~l~~~~~H---------~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~-~~~~~l~gH~~~V~~ 674 (1358)
+||++..+.+.+-+.- .-.++.+.|-|... ...|+++..-+.+++||++.+ +++..|.--.+++++
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~----~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP----NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS 252 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCC----CceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence 9999887544332211 11356788876522 478999999999999999975 578888877889999
Q ss_pred EEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEE-EeCCCCceEEEeeecccccceeecceecCcccccCCccc
Q 000673 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV-LRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLP 753 (1358)
Q Consensus 675 v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~-l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~ 753 (1358)
+...|.++++++|-. -+.+..+|++++.+... +.|-++.+..++..+ .. .+..+..|
T Consensus 253 ~~l~p~gn~Iy~gn~--------~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~-----------~~las~GL-- 310 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNT--------KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-TH-----------PVLASCGL-- 310 (412)
T ss_pred eeecCCCcEEEEecc--------cchhheecccCceeeccccCCccCCcceEEEcC-CC-----------ceEEeecc--
Confidence 999999999996533 27999999999999887 888888887774432 22 23444455
Q ss_pred cccCCcEEEEeCC
Q 000673 754 IHEDGTFRQSQIQ 766 (1358)
Q Consensus 754 ~~~D~tvr~W~~~ 766 (1358)
|+-+|+.|++
T Consensus 311 ---DRyvRIhD~k 320 (412)
T KOG3881|consen 311 ---DRYVRIHDIK 320 (412)
T ss_pred ---ceeEEEeecc
Confidence 9999999876
No 229
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.25 E-value=6.7e-05 Score=84.16 Aligned_cols=103 Identities=26% Similarity=0.442 Sum_probs=83.5
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
...|-+.|.|.+.++.. ....++.++.||.+.|+++.|.| . +.+|.||..|..|.+||
T Consensus 168 ~fvGd~~gqvt~lr~~~-------------~~~~~i~~~~~h~~~~~~l~Wd~-----~----~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQ-------------NGCQLITTFNGHTGEVTCLKWDP-----G----QRLLFSGASDHSVIMWD 225 (404)
T ss_pred EEecccccceEEEEEee-------------cCCceEEEEcCcccceEEEEEcC-----C----CcEEEeccccCceEEEe
Confidence 56677888888876652 23447889999999999999973 2 37999999999999999
Q ss_pred CCCCc-EEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCC
Q 000673 608 LGSGN-LITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1358)
Q Consensus 608 l~sg~-~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~ 658 (1358)
+--.+ ....+.+|.+.|..+...+- -+.+.|++.|+.|.+||.+.
T Consensus 226 igg~~g~~~el~gh~~kV~~l~~~~~------t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 226 IGGRKGTAYELQGHNDKVQALSYAQH------TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccCCcceeeeeccchhhhhhhhhhhh------heeeeeccCCCeEEEEeccc
Confidence 96443 34667899999999887766 67899999999999999864
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=0.00028 Score=86.71 Aligned_cols=143 Identities=12% Similarity=0.037 Sum_probs=94.0
Q ss_pred cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCC-CcEEEE--eCCCCcEEEEEecCCCcEEEEEeCCCC
Q 000673 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD-CSIRIW--DLGSGNLITVMHHHVAPVRQIILSPPQ 633 (1358)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D-~tI~lW--Dl~sg~~l~~~~~H~~~V~~l~~spd~ 633 (1358)
.++++.. .+..+...+....|+ ||| +.|+..+.+ +...+| |+.+++. ..+..+...+....|+||
T Consensus 274 ~~tg~~~-~lt~~~~~~~~~~wS-----PDG----~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpD- 341 (429)
T PRK03629 274 LASGQIR-QVTDGRSNNTEPTWF-----PDS----QNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD- 341 (429)
T ss_pred CCCCCEE-EccCCCCCcCceEEC-----CCC----CEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCC-
Confidence 3344443 344445567888998 788 777666654 444555 6666654 444455556678899999
Q ss_pred CCCCCCCeEEEEeCC---CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe
Q 000673 634 TEHPWSDCFLSVGED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1358)
Q Consensus 634 ~~~~~g~~l~S~s~D---~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~ 710 (1358)
|+.++..+.+ ..|.+||+++++.......+ ......|+|||++|+..+.+ +. ...+++|++ +|.
T Consensus 342 -----G~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~--~~---~~~l~~~~~-~G~ 408 (429)
T PRK03629 342 -----GKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQ--GM---GSVLNLVST-DGR 408 (429)
T ss_pred -----CCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcC--CC---ceEEEEEEC-CCC
Confidence 8888776543 35889999988754332222 23467899999999976544 11 146888998 577
Q ss_pred EEEEEeCCCCceEE
Q 000673 711 RERVLRGTASHSMF 724 (1358)
Q Consensus 711 ~~~~l~GH~~~v~~ 724 (1358)
..+.+.+|...+..
T Consensus 409 ~~~~l~~~~~~~~~ 422 (429)
T PRK03629 409 FKARLPATDGQVKF 422 (429)
T ss_pred CeEECccCCCCcCC
Confidence 77888888766543
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=3.7e-05 Score=86.50 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=110.7
Q ss_pred EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEec-CCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEE
Q 000673 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLG-HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1358)
Q Consensus 527 ~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~g-H~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~l 605 (1358)
.++++..|..|++++-+ + .+...|+. -+..|+|++|-| .+ ...|+.|+.. -|++
T Consensus 112 ~fava~nddvVriy~ks---------------s-t~pt~Lks~sQrnvtclawRP-----ls---aselavgCr~-gIci 166 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKS---------------S-TCPTKLKSVSQRNVTCLAWRP-----LS---ASELAVGCRA-GICI 166 (445)
T ss_pred hhhhhccCcEEEEeccC---------------C-CCCceecchhhcceeEEEecc-----CC---cceeeeeecc-eeEE
Confidence 36888899999995422 1 12223322 246799999974 33 2567777765 5899
Q ss_pred EeCCCC----cE----------EEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC-CCcEEEEECCCCcEEEEecCCCC
Q 000673 606 WDLGSG----NL----------ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFSVALASLETLRVERMFPGHPN 670 (1358)
Q Consensus 606 WDl~sg----~~----------l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~-D~tV~lwdl~~~~~~~~l~gH~~ 670 (1358)
|..... .. +.+-.+| .+|+++.|.+| |..+++++- |..|.+||..++.++...+.-.+
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d------gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED------GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC------CCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence 987521 11 1223455 68999999999 888888875 78899999999988766655556
Q ss_pred CcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEE-CCCCeEEEEEeCCCCceEEEeeec
Q 000673 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD-VKTGARERVLRGTASHSMFDHFCK 729 (1358)
Q Consensus 671 ~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd-~~tg~~~~~l~GH~~~v~~~~~~~ 729 (1358)
.++-+.|+||+.+|..+ +. |+..++|+ -++...++-..|.. .|....+.+
T Consensus 240 g~slLkwSPdgd~lfaA------t~--davfrlw~e~q~wt~erw~lgsg-rvqtacWsp 290 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAA------TC--DAVFRLWQENQSWTKERWILGSG-RVQTACWSP 290 (445)
T ss_pred ceeeEEEcCCCCEEEEe------cc--cceeeeehhcccceecceeccCC-ceeeeeecC
Confidence 78899999999999853 33 38999994 45566666555544 555444443
No 232
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.14 E-value=3.8e-05 Score=86.03 Aligned_cols=190 Identities=17% Similarity=0.145 Sum_probs=129.4
Q ss_pred cccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCc
Q 000673 481 TFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSH 560 (1358)
Q Consensus 481 t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~ 560 (1358)
.+.+-++++|-..+....-.. ....-..++++..+...... |++|..+|++.-.... .|.+..
T Consensus 42 ~s~drtvrv~lkrds~q~wps--I~~~mP~~~~~~~y~~e~~~----L~vg~~ngtvtefs~s-----------edfnkm 104 (404)
T KOG1409|consen 42 VSEDRTVRVWLKRDSGQYWPS--IYHYMPSPCSAMEYVSESRR----LYVGQDNGTVTEFALS-----------EDFNKM 104 (404)
T ss_pred ccccceeeeEEeccccccCch--hhhhCCCCceEeeeeccceE----EEEEEecceEEEEEhh-----------hhhhhc
Confidence 344566777776654321111 11112345566554444433 9999999999874432 223333
Q ss_pred eEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC-----------------------------
Q 000673 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG----------------------------- 611 (1358)
Q Consensus 561 ~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg----------------------------- 611 (1358)
...+.+..|..+|..+.|+-+ ..+++|.+.|..+..--.+.+
T Consensus 105 ~~~r~~~~h~~~v~~~if~~~---------~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 105 TFLKDYLAHQARVSAIVFSLT---------HEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred chhhhhhhhhcceeeEEecCC---------ceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence 355666789999999988621 167888888876543222211
Q ss_pred ------------cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcE-EEEecCCCCCcEEEEEc
Q 000673 612 ------------NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVVWD 678 (1358)
Q Consensus 612 ------------~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~-~~~l~gH~~~V~~v~~s 678 (1358)
.++.++.+|.++++++.|.|. ...+.||..|..|.+||+-.++- ...+.+|...|..+..-
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCC------CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 235678899999999999998 68999999999999999976654 36778999999888887
Q ss_pred CCCCEEEEEecCCccccCCCCeEEEEECCCCe
Q 000673 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1358)
Q Consensus 679 pd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~ 710 (1358)
+.-+.++ +.+.||.|-+||++...
T Consensus 250 ~~t~~l~--------S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 250 QHTRQLI--------SCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhheeee--------eccCCCeEEEEecccee
Confidence 7777777 45557999999997543
No 233
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.13 E-value=2e-05 Score=90.11 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=85.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEe-cCCCC
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHPN 670 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l-~gH~~ 670 (1358)
......+.+..+.+|....+.+. -+-||-.-++.++|+|| ++.++++..|..|++-.....-.+..| -||..
T Consensus 123 ~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D------~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e 195 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPD------DQFIITADRDEKIRVSRYPATFVIESFCLGHKE 195 (390)
T ss_pred EEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCC------CCEEEEecCCceEEEEecCcccchhhhccccHh
Confidence 34455667777888887775544 44599999999999999 899999999999999877655555555 58999
Q ss_pred CcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 671 YPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 671 ~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
+|..++.-++.. |++ |++ |+++|+||+++|+++.++.
T Consensus 196 FVS~isl~~~~~-LlS------~sG--D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 196 FVSTISLTDNYL-LLS------GSG--DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred heeeeeeccCce-eee------cCC--CCcEEEEecccCCcccccc
Confidence 999999986544 663 333 5999999999999886654
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.13 E-value=0.00016 Score=89.19 Aligned_cols=166 Identities=14% Similarity=0.093 Sum_probs=109.9
Q ss_pred ecccCCCcEEEEEeeccCcccCCEEEEEEc---CCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEec
Q 000673 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFF---SGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~---dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp 580 (1358)
.+..|...+.+..+.++... |++.+. +..|++ ++ +.+++. ..+..+.+.+.+..|+
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~----lay~s~~~g~~~i~~--~d-------------l~~g~~-~~l~~~~g~~~~~~~S- 254 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQE----ITYMSYANGRPRVYL--LD-------------LETGQR-ELVGNFPGMTFAPRFS- 254 (435)
T ss_pred EEecCCCCeEeeEECCCCCE----EEEEEecCCCCEEEE--EE-------------CCCCcE-EEeecCCCcccCcEEC-
Confidence 34556667777664554443 666553 234555 33 444443 3456677788888998
Q ss_pred cccCCCCCccCcEEEEEeCCCc--EEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC-C--CcEEEEE
Q 000673 581 MVGTAKGWSFNEVLVSGSMDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-D--FSVALAS 655 (1358)
Q Consensus 581 ~~~~~dg~~~~~~L~Sgs~D~t--I~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~-D--~tV~lwd 655 (1358)
||| +.++++.+.|+. |.+||+.+++. ..+..+.+......|+|| |+.++..+. + ..|.+||
T Consensus 255 ----PDG---~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD------G~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 255 ----PDG---RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD------GSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred ----CCC---CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC------CCEEEEEECCCCCCeEEEEE
Confidence 788 234557777766 77779887765 556667777788999999 887777664 3 3688889
Q ss_pred CCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe
Q 000673 656 LETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1358)
Q Consensus 656 l~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~ 710 (1358)
+.+++..+.. .+...+....|+|+|++|+....+ ..+..|.+||+.++.
T Consensus 321 ~~g~~~~~lt-~~~~~~~~~~~SpdG~~ia~~~~~-----~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 321 ADGSNPRRIS-FGGGRYSTPVWSPRGDLIAFTKQG-----GGQFSIGVMKPDGSG 369 (435)
T ss_pred CCCCCeEEee-cCCCcccCeEECCCCCEEEEEEcC-----CCceEEEEEECCCCc
Confidence 8877654433 334456678999999999865432 112578999986554
No 235
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=1e-05 Score=94.02 Aligned_cols=201 Identities=12% Similarity=0.095 Sum_probs=137.9
Q ss_pred CCccccccccCCCCCC---------CceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCc
Q 000673 484 QDTVPRSEHVDSRQAG---------DGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGAS 554 (1358)
Q Consensus 484 ~s~i~~W~~~~~~~~~---------~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~ 554 (1358)
.+...+|..+...... .....|.||...|.++..+.+..- +++++.|.++++|...+.+.
T Consensus 701 Gn~lA~W~~ets~~e~dt~~ln~~~irL~nf~GH~~~iRai~AidNENS----FiSASkDKTVKLWSik~EgD------- 769 (1034)
T KOG4190|consen 701 GNLLAVWCAETSAAECDTDNLNFDHIRLCNFTGHQEKIRAIAAIDNENS----FISASKDKTVKLWSIKPEGD------- 769 (1034)
T ss_pred cchHHHHHhhhhHhhcCCcccccceeeeecccCcHHHhHHHHhcccccc----eeeccCCceEEEEEeccccC-------
Confidence 3556677765432211 233567899999888665544433 79999999999987765443
Q ss_pred cccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEec--CCCcEEEEEeCCC
Q 000673 555 LKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH--HVAPVRQIILSPP 632 (1358)
Q Consensus 555 ~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~--H~~~V~~l~~spd 632 (1358)
...+..|..++..|+.+|..+.|- .|- ++++| .|+-|.+||..-|+++..+.. ..+.+..+.--|+
T Consensus 770 -~~~tsaCQfTY~aHkk~i~~igfL-----~~l----r~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n 837 (1034)
T KOG4190|consen 770 -EIGTSACQFTYQAHKKPIHDIGFL-----ADL----RSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN 837 (1034)
T ss_pred -ccccceeeeEhhhccCcccceeee-----ecc----ceeee--ccCcceeecccccchhHhhhcCcccCCCceeEeccc
Confidence 356667889999999999999995 333 56665 489999999998888765432 1122222332232
Q ss_pred CCCCCCCCeEEE-EeCCCcEEEEECCCCcEEEEe-----cCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 633 QTEHPWSDCFLS-VGEDFSVALASLETLRVERMF-----PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 633 ~~~~~~g~~l~S-~s~D~tV~lwdl~~~~~~~~l-----~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
. +...+.. ++...+|+++|.+.++-...+ ++...-+.+++..|.|++++. +-+. |+|-+-|.
T Consensus 838 v----~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa------~LSn--Gci~~LDa 905 (1034)
T KOG4190|consen 838 V----DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAA------ALSN--GCIAILDA 905 (1034)
T ss_pred C----cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhH------HhcC--CcEEEEec
Confidence 1 0234444 477899999999987654433 344455789999999999984 3333 89999999
Q ss_pred CCCeEEEEEeCCC
Q 000673 707 KTGARERVLRGTA 719 (1358)
Q Consensus 707 ~tg~~~~~l~GH~ 719 (1358)
++|..+..++...
T Consensus 906 R~G~vINswrpme 918 (1034)
T KOG4190|consen 906 RNGKVINSWRPME 918 (1034)
T ss_pred CCCceeccCCccc
Confidence 9999988777554
No 236
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.10 E-value=1e-05 Score=63.54 Aligned_cols=39 Identities=36% Similarity=0.630 Sum_probs=36.0
Q ss_pred ceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 560 ~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
+++++++.+|.+.|++++|+ |++ ++|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~-----~~~----~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWS-----PDG----NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEE-----TTS----SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEe-----ccc----ccceeeCCCCEEEEEC
Confidence 45889999999999999998 666 9999999999999997
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.09 E-value=0.00054 Score=84.18 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=98.8
Q ss_pred EE-EEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEe-CCCcEEE
Q 000673 528 IV-YGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRI 605 (1358)
Q Consensus 528 lv-~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs-~D~tI~l 605 (1358)
++ ....+|...++.++. .++. ...+..|.+.+....|+ ||| +.|+..+ .++...+
T Consensus 254 la~~~~~~g~~~Iy~~d~-------------~~~~-~~~lt~~~~~~~~~~wS-----pDG----~~l~f~s~~~g~~~I 310 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNA-------------DGSG-LRRLTQSSGIDTEPFFS-----PDG----RSIYFTSDRGGAPQI 310 (427)
T ss_pred EEEEEccCCCceEEEEEC-------------CCCC-cEECCCCCCCCcCeEEc-----CCC----CEEEEEecCCCCcEE
Confidence 44 356678777766552 2222 34455566666778897 888 7666544 4566777
Q ss_pred EeC--CCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCC---cEEEEECCCCcEEEEecCCCCCcEEEEEcCC
Q 000673 606 WDL--GSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF---SVALASLETLRVERMFPGHPNYPAKVVWDCP 680 (1358)
Q Consensus 606 WDl--~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~---tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd 680 (1358)
|.+ .+++. ..+..+........|+|+ |+.++..+.++ .|.+||+.+++......+ .......|+||
T Consensus 311 y~~~~~~g~~-~~lt~~g~~~~~~~~SpD------G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spd 381 (427)
T PRK02889 311 YRMPASGGAA-QRVTFTGSYNTSPRISPD------GKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPN 381 (427)
T ss_pred EEEECCCCce-EEEecCCCCcCceEECCC------CCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCC
Confidence 755 44443 333233344556789999 88888777654 699999998876543332 23467899999
Q ss_pred CCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCce
Q 000673 681 RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS 722 (1358)
Q Consensus 681 ~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v 722 (1358)
|++|+..+.+ ++...+++-+. +|...+.+..+.+.+
T Consensus 382 g~~l~~~~~~-----~g~~~l~~~~~-~g~~~~~l~~~~g~~ 417 (427)
T PRK02889 382 GRYILYATQQ-----GGRSVLAAVSS-DGRIKQRLSVQGGDV 417 (427)
T ss_pred CCEEEEEEec-----CCCEEEEEEEC-CCCceEEeecCCCCC
Confidence 9999965543 11135777777 576666666555444
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.09 E-value=0.00014 Score=89.60 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=104.4
Q ss_pred ccCCCcEEEEEeeccCcccCCEEEEEEcC-C--cEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccc
Q 000673 506 VHKEKIVSSSMVISESFYAPYAIVYGFFS-G--EIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 506 ~~h~~~Vts~~~i~~~~~~p~~lv~G~~d-G--~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~ 582 (1358)
..+...+.+..+.++..+ +++.+.+ + .|++++ +.+++. ..+..+.+...+..|+
T Consensus 200 t~~~~~v~~p~wSpDg~~----la~~s~~~~~~~l~~~d---------------l~~g~~-~~l~~~~g~~~~~~~S--- 256 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKK----LAYVSFERGRSAIYVQD---------------LATGQR-ELVASFRGINGAPSFS--- 256 (433)
T ss_pred ecCCCccccccCCCCCCE----EEEEecCCCCcEEEEEE---------------CCCCCE-EEeccCCCCccCceEC---
Confidence 344555666553333333 7766533 2 455533 334433 2344445555678897
Q ss_pred cCCCCCccCcEEEEEeCCC--cEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC-CCc--EEEEECC
Q 000673 583 GTAKGWSFNEVLVSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DFS--VALASLE 657 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~--tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~-D~t--V~lwdl~ 657 (1358)
||| +.++++.+.++ .|.+||+.+++. ..+..|.+......|+|| |+.++.++. ++. |.++|+.
T Consensus 257 --pDG---~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spD------G~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 257 --PDG---RRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPD------GKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred --CCC---CEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCC------CCEEEEEECCCCCceEEEEECC
Confidence 788 23445666666 599999988875 456666666678899999 887777664 444 6667777
Q ss_pred CCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEE
Q 000673 658 TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1358)
Q Consensus 658 ~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~ 712 (1358)
+++..+. ..+.......+|+|||++|+..+.+ +.+..|++||+.+|+..
T Consensus 325 ~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~~~~-----~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 325 GGSAERL-TFQGNYNARASVSPDGKKIAMVHGS-----GGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCeEEe-ecCCCCccCEEECCCCCEEEEEECC-----CCceeEEEEECCCCCeE
Confidence 7765432 2233345578999999999864322 22247999999888765
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.05 E-value=0.0003 Score=86.70 Aligned_cols=131 Identities=11% Similarity=0.126 Sum_probs=96.6
Q ss_pred EEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeC---CCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCC
Q 000673 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM---DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1358)
Q Consensus 562 ~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~---D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~ 638 (1358)
..+.+..|.+.|.+..|+ ||| +.|+..+. +..|.+||+.+++. ..+..+.+.+....|+||
T Consensus 193 ~~~~lt~~~~~v~~p~wS-----pDG----~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPD------ 256 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFS-----PNR----QEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPD------ 256 (435)
T ss_pred CcEEEecCCCCeEeeEEC-----CCC----CEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCC------
Confidence 345677888999999998 888 77777653 46899999998875 445566778889999999
Q ss_pred CCeE-EEEeCCCc--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEE
Q 000673 639 SDCF-LSVGEDFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1358)
Q Consensus 639 g~~l-~S~s~D~t--V~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~ 714 (1358)
|+.+ ++.+.|+. |.+||+++++.. .+..+........|+|||++|+..+.. +.+..|++||+.+++..+.
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~-----~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDR-----SGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECC-----CCCCeEEEEECCCCCeEEe
Confidence 7765 46666665 777799887764 455566566789999999999864421 1125799999987665443
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.0002 Score=84.87 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=103.9
Q ss_pred CCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCC-----EEEEEEeccc
Q 000673 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA-----VLCLAAHRMV 582 (1358)
Q Consensus 508 h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~-----V~~l~~sp~~ 582 (1358)
..+.+.++.+.+.... |++|+.+|.+..| |+..+.. +.+-........|.+. |+++.|.
T Consensus 174 ~~~~lN~v~in~~hgL----la~Gt~~g~VEfw--DpR~ksr-------v~~l~~~~~v~s~pg~~~~~svTal~F~--- 237 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGL----LACGTEDGVVEFW--DPRDKSR-------VGTLDAASSVNSHPGGDAAPSVTALKFR--- 237 (703)
T ss_pred ccccceeeeecCccce----EEecccCceEEEe--cchhhhh-------heeeecccccCCCccccccCcceEEEec---
Confidence 3455666554444555 8999999999994 4322210 1111111122334444 9999996
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEE-ecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcE
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~-~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~ 661 (1358)
.|| -.++.|..+|.|.|+|+++.+++..- .+..-+|..+.|.+... +..++|. +...++|||-.+|+.
T Consensus 238 --d~g----L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~----q~~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 238 --DDG----LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ----QNKVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred --CCc----eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC----CceEEec-chHHhhhcccccCCc
Confidence 556 88999999999999999998876542 33456889999977621 2344444 457889999999999
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEE
Q 000673 662 ERMFPGHPNYPAKVVWDCPRGYIACL 687 (1358)
Q Consensus 662 ~~~l~gH~~~V~~v~~spd~~~L~~g 687 (1358)
...+.... .++.+++-|++.++.++
T Consensus 307 ~asiEpt~-~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 307 MASIEPTS-DLNDFCFVPGSGMFFTA 331 (703)
T ss_pred eeeccccC-CcCceeeecCCceEEEe
Confidence 88776543 58999999998888853
No 241
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.00 E-value=1.5e-05 Score=62.66 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=37.1
Q ss_pred CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEE
Q 000673 611 GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1358)
Q Consensus 611 g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwd 655 (1358)
|+++++|.+|.++|++++|+|+ +.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPD------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETT------SSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecc------cccceeeCCCCEEEEEC
Confidence 5788999999999999999999 89999999999999997
No 242
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=1.1e-05 Score=90.21 Aligned_cols=125 Identities=16% Similarity=0.173 Sum_probs=100.1
Q ss_pred CCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC-----cEEEEEecCCCcEEEEEeCC-CCCCCCCCCeE
Q 000673 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-----NLITVMHHHVAPVRQIILSP-PQTEHPWSDCF 642 (1358)
Q Consensus 569 H~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg-----~~l~~~~~H~~~V~~l~~sp-d~~~~~~g~~l 642 (1358)
-++.|.++.|+ ..+ +++..|...|.|...|++.+ .+.+.+ .|...|+++..-. + ++++
T Consensus 251 sksDVfAlQf~-----~s~----nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s------~q~L 314 (425)
T KOG2695|consen 251 SKSDVFALQFA-----GSD----NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFS------QQKL 314 (425)
T ss_pred cchhHHHHHhc-----ccC----CeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccc------cceE
Confidence 56789999997 333 89999999999999999864 345555 5888999987765 4 7899
Q ss_pred EEEeCCCcEEEEECCCCcE---EEEecCCCCCcE--EEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeC
Q 000673 643 LSVGEDFSVALASLETLRV---ERMFPGHPNYPA--KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1358)
Q Consensus 643 ~S~s~D~tV~lwdl~~~~~---~~~l~gH~~~V~--~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~G 717 (1358)
++.+.+|+|+|||++--++ ++.+.||.+.-. -+..++....+++++ | |+..|||.++.|+++.++.-
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-------d-DcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-------D-DCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-------C-eeEEEEEecccCceeeccCC
Confidence 9999999999999998777 999999976443 345567788887432 2 69999999999999988763
No 243
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.00044 Score=85.02 Aligned_cols=120 Identities=12% Similarity=0.047 Sum_probs=81.9
Q ss_pred CCEEEEEEeccccCCCCCccCcEEE-EEeCCC--cEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC
Q 000673 571 GAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1358)
Q Consensus 571 ~~V~~l~~sp~~~~~dg~~~~~~L~-Sgs~D~--tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~ 647 (1358)
+.+..+.|+ ||| +.|+ +.+.++ .|.+||+.+++.. .+..+...+....|+|| |+.|+.++.
T Consensus 243 ~~~~~~~~S-----PDG----~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPD------G~~I~f~s~ 306 (429)
T PRK03629 243 RHNGAPAFS-----PDG----SKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPD------SQNLAYTSD 306 (429)
T ss_pred CCcCCeEEC-----CCC----CEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCC------CCEEEEEeC
Confidence 334567897 888 6555 445555 4889999988764 44444567889999999 888877765
Q ss_pred C-Cc--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEE
Q 000673 648 D-FS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1358)
Q Consensus 648 D-~t--V~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~ 712 (1358)
+ +. |.++|+.+++.. .+..+........|+|||++|+..+.+ +....|++||+++|+..
T Consensus 307 ~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~-----~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 307 QAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN-----GGQQHIAKQDLATGGVQ 368 (429)
T ss_pred CCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEcc-----CCCceEEEEECCCCCeE
Confidence 4 44 444577776553 333344455678999999999865432 22357999999988743
No 244
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.00021 Score=87.83 Aligned_cols=134 Identities=14% Similarity=0.135 Sum_probs=86.3
Q ss_pred cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEE-EEEeCCCcEEEEeC--CCCcEEEEEecCCCcEEEEEeCCCC
Q 000673 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVL-VSGSMDCSIRIWDL--GSGNLITVMHHHVAPVRQIILSPPQ 633 (1358)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L-~Sgs~D~tI~lWDl--~sg~~l~~~~~H~~~V~~l~~spd~ 633 (1358)
+.+++.. .+....+.+.+..|+ ||| +.| ++.+.|+...+|.+ ..+. +..+..|.+.+....|+||
T Consensus 227 l~~g~~~-~l~~~~g~~~~~~~S-----PDG----~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD- 294 (427)
T PRK02889 227 LATGRRR-VVANFKGSNSAPAWS-----PDG----RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPD- 294 (427)
T ss_pred CCCCCEE-EeecCCCCccceEEC-----CCC----CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCC-
Confidence 4445433 344445566788898 788 655 57788888777754 4444 5666666666778899999
Q ss_pred CCCCCCCeEEEEeC-CCcEEEEEC--CCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe
Q 000673 634 TEHPWSDCFLSVGE-DFSVALASL--ETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1358)
Q Consensus 634 ~~~~~g~~l~S~s~-D~tV~lwdl--~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~ 710 (1358)
|+.++..+. ++...+|.+ .+++..+.. .+........|+|||++|+..+.+ +.+..|++||+.+++
T Consensus 295 -----G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~-----~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 295 -----GRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKLLAYISRV-----GGAFKLYVQDLATGQ 363 (427)
T ss_pred -----CCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCEEEEEEcc-----CCcEEEEEEECCCCC
Confidence 887776554 456666654 555543322 222334567899999999854432 112479999999887
Q ss_pred EEE
Q 000673 711 RER 713 (1358)
Q Consensus 711 ~~~ 713 (1358)
...
T Consensus 364 ~~~ 366 (427)
T PRK02889 364 VTA 366 (427)
T ss_pred eEE
Confidence 544
No 245
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.00022 Score=87.78 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=92.1
Q ss_pred EEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCC---CcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCC
Q 000673 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPW 638 (1358)
Q Consensus 562 ~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D---~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~ 638 (1358)
..+.+..|...+.+..|+ ||| +.|+..+.+ ..|.+||+.+++.. .+..+.+...+..|+||
T Consensus 195 ~~~~lt~~~~~v~~p~wS-----pDg----~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpD------ 258 (433)
T PRK04922 195 NPQTILRSAEPILSPAWS-----PDG----KKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPD------ 258 (433)
T ss_pred CceEeecCCCccccccCC-----CCC----CEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCC------
Confidence 345566778889999998 888 888877643 46999999888753 33444555668899999
Q ss_pred CCeE-EEEeCCC--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEE
Q 000673 639 SDCF-LSVGEDF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1358)
Q Consensus 639 g~~l-~S~s~D~--tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~ 713 (1358)
|+.+ ++.+.++ .|.+||+.+++.. .+..+........|+|||++|+..+.. ++...|+++|+.+++..+
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~-----~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDR-----GGRPQIYRVAASGGSAER 330 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCeEE
Confidence 7755 4556555 5999999988754 455565555688999999999854321 111358888888877544
No 246
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=2.9e-05 Score=90.30 Aligned_cols=151 Identities=15% Similarity=0.002 Sum_probs=102.7
Q ss_pred ccccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCcccc
Q 000673 478 SDLTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKV 557 (1358)
Q Consensus 478 l~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~ 557 (1358)
+.+++.+-.+-+|+-....+ ......+|...|....|++...-.+ ++..+.||.+++-.....+.
T Consensus 157 l~SgSDD~~vv~WdW~~~~~---~l~f~SGH~~NvfQaKFiP~s~d~t--i~~~s~dgqvr~s~i~~t~~---------- 221 (559)
T KOG1334|consen 157 LASGSDDLQVVVWDWVSGSP---KLSFESGHCNNVFQAKFIPFSGDRT--IVTSSRDGQVRVSEILETGY---------- 221 (559)
T ss_pred eeccCccceEEeehhhccCc---ccccccccccchhhhhccCCCCCcC--ceeccccCceeeeeeccccc----------
Confidence 44556666777788654432 2223367888877755444433222 88889999999955442211
Q ss_pred CCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEe---cCCC---cEEEEEeCC
Q 000673 558 NSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH---HHVA---PVRQIILSP 631 (1358)
Q Consensus 558 ~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~---~H~~---~V~~l~~sp 631 (1358)
.+....+..|.+.|.-++.-| +. ...|.|++.|+.+.-.|++.+.+...+. .+.. ....++..|
T Consensus 222 --~e~t~rl~~h~g~vhklav~p-----~s---p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 222 --VENTKRLAPHEGPVHKLAVEP-----DS---PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred --eecceecccccCccceeeecC-----CC---CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 112345678999999999864 33 3679999999999999998876544443 2333 467888888
Q ss_pred CCCCCCCCCeEEEEeCCCcEEEEECCC
Q 000673 632 PQTEHPWSDCFLSVGEDFSVALASLET 658 (1358)
Q Consensus 632 d~~~~~~g~~l~S~s~D~tV~lwdl~~ 658 (1358)
.+ ...+++++.|..+++||.+.
T Consensus 292 ~n-----t~~faVgG~dqf~RvYD~R~ 313 (559)
T KOG1334|consen 292 RN-----TNEFAVGGSDQFARVYDQRR 313 (559)
T ss_pred CC-----ccccccCChhhhhhhhcccc
Confidence 74 35899999999999999764
No 247
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.92 E-value=0.0012 Score=73.63 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=70.0
Q ss_pred CCEEEEEEeccccCCCCCccCcEEEEEeC--CCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCC
Q 000673 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGSM--DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1358)
Q Consensus 571 ~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~--D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D 648 (1358)
-.+.-++|+ +|. .+++|-.. -+.+-+||+...+.-..+ ....+|+...|.|. ...++.+...
T Consensus 319 ~g~g~lafs-----~Ds----~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~------~prL~vctg~ 382 (447)
T KOG4497|consen 319 CGAGKLAFS-----CDS----TYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPG------RPRLVVCTGK 382 (447)
T ss_pred cccceeeec-----CCc----eEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCC------CceEEEEcCC
Confidence 356778897 676 77777543 236789999876643333 45678999999998 3334444334
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecC
Q 000673 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRD 690 (1358)
Q Consensus 649 ~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d 690 (1358)
..+.+|.+....++. .++..-.|..+.|+-+|.+++..+.|
T Consensus 383 srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 383 SRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred ceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCC
Confidence 458899887655554 34444578899999999988854443
No 248
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.0046 Score=73.97 Aligned_cols=125 Identities=16% Similarity=0.221 Sum_probs=93.7
Q ss_pred CCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC-
Q 000673 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE- 647 (1358)
Q Consensus 569 H~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~- 647 (1358)
..++|.++.|+ |+|+ +=-++-|-+=.++-|+|++ ++++..| -.++-+++.|+|. |++++-++-
T Consensus 269 k~GPVhdv~W~-----~s~~--EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~------g~ii~lAGFG 332 (566)
T KOG2315|consen 269 KEGPVHDVTWS-----PSGR--EFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPH------GNIILLAGFG 332 (566)
T ss_pred CCCCceEEEEC-----CCCC--EEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCC------CCEEEEeecC
Confidence 36899999998 5661 1235557778899999985 6666655 4688899999999 898888775
Q ss_pred --CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEE
Q 000673 648 --DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1358)
Q Consensus 648 --D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~ 714 (1358)
-|.|-+||+.+.+++..+..- .-+-+.|+|||.+++++.... ----|+.++||++ +|.++..
T Consensus 333 NL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaP--RlrvdNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 333 NLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAP--RLRVDNGIKIWHY-TGSLLHE 396 (566)
T ss_pred CCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccc--cEEecCCeEEEEe-cCceeeh
Confidence 488999999999998888754 345789999999999754210 0112589999998 6776543
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.88 E-value=0.00019 Score=85.96 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=86.4
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCc
Q 000673 593 VLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYP 672 (1358)
Q Consensus 593 ~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V 672 (1358)
.+++-..++.|.+.|..+.+.+.++......-..+.|+|| |+++..++.|+.|.++|+.+++.+..++.-. ..
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D------gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~ 80 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD------GRYLYVANRDGTVSVIDLATGKVVATIKVGG-NP 80 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-------SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC------CCEEEEEcCCCeEEEEECCcccEEEEEecCC-Cc
Confidence 3456677899999999999999999876555556789999 8999999999999999999999999887543 57
Q ss_pred EEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCC
Q 000673 673 AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1358)
Q Consensus 673 ~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH 718 (1358)
..+++++||+++++++.. ++.+.|+|.+|.+.++++...
T Consensus 81 ~~i~~s~DG~~~~v~n~~-------~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYE-------PGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEEE--TTTEEEEEEEE-------TTEEEEEETTT--EEEEEE--
T ss_pred ceEEEcCCCCEEEEEecC-------CCceeEeccccccceeecccc
Confidence 899999999999987643 489999999999999887643
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.88 E-value=0.011 Score=69.91 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=85.6
Q ss_pred cCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC
Q 000673 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1358)
Q Consensus 568 gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~ 647 (1358)
+-.+.|....|. |++ ..--+++|-.+-++-++|++.. . ++......=+.+.|+|. +++++.++-
T Consensus 272 ~~~~pVhdf~W~-----p~S--~~F~vi~g~~pa~~s~~~lr~N-l--~~~~Pe~~rNT~~fsp~------~r~il~agF 335 (561)
T COG5354 272 DLKDPVHDFTWE-----PLS--SRFAVISGYMPASVSVFDLRGN-L--RFYFPEQKRNTIFFSPH------ERYILFAGF 335 (561)
T ss_pred cccccceeeeec-----ccC--CceeEEecccccceeecccccc-e--EEecCCcccccccccCc------ccEEEEecC
Confidence 457899999998 444 1235667789999999999765 3 33344566678889998 889998876
Q ss_pred C---CcEEEEECCCCc-EEEEecCCCCCcEEEEEcCCCCEEEEEecCCcccc-CCCCeEEEEECC
Q 000673 648 D---FSVALASLETLR-VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTS-DAVDVLFIWDVK 707 (1358)
Q Consensus 648 D---~tV~lwdl~~~~-~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgss-D~DgtV~vWd~~ 707 (1358)
| |.+-+||..... ++..+.+-. ..-+.|+||+.|+.+.... -- -.|..|+|||+.
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts---~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTS---EKLRVDNSIKLWDVY 395 (561)
T ss_pred CccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCC---cccccCcceEEEEec
Confidence 6 679999987654 444666543 4567899999999864321 11 246899999995
No 251
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.86 E-value=7e-05 Score=85.86 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=75.8
Q ss_pred EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCCcEEEEEeCCCCCCCCCCCeE
Q 000673 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCF 642 (1358)
Q Consensus 564 ~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~-~H~~~V~~l~~spd~~~~~~g~~l 642 (1358)
..+-||-..++.|+|+ ||+ ++++++..|..||+=....-..+..|. ||+..|..++.-++ +.|
T Consensus 145 ~~~lGhvSml~dVavS-----~D~----~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-------~~L 208 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVS-----PDD----QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-------YLL 208 (390)
T ss_pred chhhhhhhhhheeeec-----CCC----CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-------cee
Confidence 3456999999999998 777 999999999999998877666666665 69999999999876 779
Q ss_pred EEEeCCCcEEEEECCCCcEEEEec
Q 000673 643 LSVGEDFSVALASLETLRVERMFP 666 (1358)
Q Consensus 643 ~S~s~D~tV~lwdl~~~~~~~~l~ 666 (1358)
+|+|.|+++++||+++|+++..+.
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecCCCCcEEEEecccCCcccccc
Confidence 999999999999999999987664
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.014 Score=70.01 Aligned_cols=129 Identities=19% Similarity=0.286 Sum_probs=89.1
Q ss_pred CCcEEEEEeeccCcccCC----EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccC
Q 000673 509 EKIVSSSMVISESFYAPY----AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGT 584 (1358)
Q Consensus 509 ~~~Vts~~~i~~~~~~p~----~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~ 584 (1358)
.++|.+.. |.|+ +++.|+.-..+.| |++. +.++..|. .++=+++-|+
T Consensus 270 ~GPVhdv~------W~~s~~EF~VvyGfMPAkvti--fnlr--------------~~~v~df~--egpRN~~~fn----- 320 (566)
T KOG2315|consen 270 EGPVHDVT------WSPSGREFAVVYGFMPAKVTI--FNLR--------------GKPVFDFP--EGPRNTAFFN----- 320 (566)
T ss_pred CCCceEEE------ECCCCCEEEEEEecccceEEE--EcCC--------------CCEeEeCC--CCCccceEEC-----
Confidence 35666655 4444 3788888878887 4432 22444442 5666788887
Q ss_pred CCCCccCcEEEEEeCC---CcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC------CCcEEEEE
Q 000673 585 AKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE------DFSVALAS 655 (1358)
Q Consensus 585 ~dg~~~~~~L~Sgs~D---~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~------D~tV~lwd 655 (1358)
|.| ++++-+|-+ |.|-+||+.+.+++.++..-.. +-+.|+|| |++|+++.. |+.++||+
T Consensus 321 p~g----~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~Pd------Ge~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 321 PHG----NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPD------GEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred CCC----CEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCC------CcEEEEEeccccEEecCCeEEEE
Confidence 677 888777654 6899999999999998876443 44789999 899988764 89999999
Q ss_pred CCCCcEEEEecCCCCCcEEEEEcCC
Q 000673 656 LETLRVERMFPGHPNYPAKVVWDCP 680 (1358)
Q Consensus 656 l~~~~~~~~l~gH~~~V~~v~~spd 680 (1358)
.. |+.+..-.- .+..+.+.|.|-
T Consensus 389 yt-G~~l~~~~f-~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 389 YT-GSLLHEKMF-KSELLQVEWRPF 411 (566)
T ss_pred ec-Cceeehhhh-hHhHhheeeeec
Confidence 86 554432211 115778888874
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.80 E-value=7.9e-05 Score=97.65 Aligned_cols=147 Identities=10% Similarity=0.149 Sum_probs=113.9
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEe-cCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFL-GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~-gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lW 606 (1358)
-++|+.||.+++|.|. .++.+..++ +-...|+.+.|+ ..| +.+..+..||.+.+|
T Consensus 2223 Yltgs~dgsv~~~~w~---------------~~~~v~~~rt~g~s~vtr~~f~-----~qG----nk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWG---------------HGQQVVCFRTAGNSRVTRSRFN-----HQG----NKFGIVDGDGDLSLW 2278 (2439)
T ss_pred EEecCCCceEEEEecc---------------CCCeEEEeeccCcchhhhhhhc-----ccC----CceeeeccCCceeec
Confidence 6899999999998875 222333332 223789999997 566 778888899999999
Q ss_pred eCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEe---CCCcEEEEECCC--C-cEEEEecCCCCCcEEEEEcCC
Q 000673 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---EDFSVALASLET--L-RVERMFPGHPNYPAKVVWDCP 680 (1358)
Q Consensus 607 Dl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s---~D~tV~lwdl~~--~-~~~~~l~gH~~~V~~v~~spd 680 (1358)
.+. .++....+.|........|- +..+++++ .++.+.+||..- + .++. ..|.+.++++++-|.
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi--------~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~ 2347 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFI--------GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPK 2347 (2439)
T ss_pred ccC-CcceeccccCCccccceeee--------ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCc
Confidence 986 77788888998888888885 44566654 578999999653 2 2344 789999999999999
Q ss_pred CCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeC
Q 000673 681 RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1358)
Q Consensus 681 ~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~G 717 (1358)
.+.|++|+. +|.|++||++..++..+++.
T Consensus 2348 ~qllisggr--------~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2348 HQLLISGGR--------KGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred ceEEEecCC--------cCcEEEeehHHHHHHHHhhh
Confidence 999996554 49999999999888777764
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.80 E-value=0.0011 Score=80.90 Aligned_cols=132 Identities=18% Similarity=0.156 Sum_probs=88.6
Q ss_pred cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEE-EEEeCCC--cEEEEeCCCCcEEEEEecCCCcEEEEEeCCCC
Q 000673 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVL-VSGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQ 633 (1358)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L-~Sgs~D~--tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~ 633 (1358)
+.+++. ..+..+.+.+.+..|+ ||| +.| ++.+.++ .|.+||+.+++. ..+..+.+......|+|+
T Consensus 221 ~~~g~~-~~~~~~~~~~~~~~~s-----pDg----~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~d- 288 (417)
T TIGR02800 221 LATGQR-EKVASFPGMNGAPAFS-----PDG----SKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPD- 288 (417)
T ss_pred CCCCCE-EEeecCCCCccceEEC-----CCC----CEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCC-
Confidence 334433 2344566677788897 787 544 5666555 588999987764 445555555667889998
Q ss_pred CCCCCCCeEEEEeC-CC--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe
Q 000673 634 TEHPWSDCFLSVGE-DF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1358)
Q Consensus 634 ~~~~~g~~l~S~s~-D~--tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~ 710 (1358)
|+.++.++. ++ .|.++|+.+++.. .+..+...+....|+|+|++++....+ .+ -..|++||+.++.
T Consensus 289 -----g~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~----~~-~~~i~~~d~~~~~ 357 (417)
T TIGR02800 289 -----GKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHRE----GG-GFNIAVMDLDGGG 357 (417)
T ss_pred -----CCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEcc----CC-ceEEEEEeCCCCC
Confidence 787776654 33 5788888877754 344344567788999999999865543 01 1379999998865
Q ss_pred E
Q 000673 711 R 711 (1358)
Q Consensus 711 ~ 711 (1358)
.
T Consensus 358 ~ 358 (417)
T TIGR02800 358 E 358 (417)
T ss_pred e
Confidence 4
No 255
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=6.1e-05 Score=84.43 Aligned_cols=118 Identities=21% Similarity=0.248 Sum_probs=87.0
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
++.|+.+|+|..+++.... .+ .+.+.+.|. |...|+|+..-. -++ +.|.+.+.+|+|++||
T Consensus 267 v~~GcRngeI~~iDLR~rn----qG------~~~~a~rly-h~Ssvtslq~Lq----~s~----q~LmaS~M~gkikLyD 327 (425)
T KOG2695|consen 267 VFNGCRNGEIFVIDLRCRN----QG------NGWCAQRLY-HDSSVTSLQILQ----FSQ----QKLMASDMTGKIKLYD 327 (425)
T ss_pred eEecccCCcEEEEEeeecc----cC------CCcceEEEE-cCcchhhhhhhc----ccc----ceEeeccCcCceeEee
Confidence 8999999999997654221 11 233555554 899999988631 133 8999999999999999
Q ss_pred CCCCcE---EEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCC
Q 000673 608 LGSGNL---ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH 668 (1358)
Q Consensus 608 l~sg~~---l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH 668 (1358)
++.-++ +.++.||...-.-+-++- ++....++++++|-..|+|.++.|..+.+++-.
T Consensus 328 ~R~~K~~~~V~qYeGHvN~~a~l~~~v----~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 328 LRATKCKKSVMQYEGHVNLSAYLPAHV----KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ehhhhcccceeeeeccccccccccccc----ccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 997777 889999955333332221 233678899999999999999999998887643
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.72 E-value=0.0031 Score=77.08 Aligned_cols=129 Identities=17% Similarity=0.204 Sum_probs=90.4
Q ss_pred EEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCC---CcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCC
Q 000673 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1358)
Q Consensus 563 ~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D---~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g 639 (1358)
.+.+..+...+....|+ ||| ++|+.++.+ ..|++||+.+++... +..+.+.+.++.|+|| |
T Consensus 182 ~~~l~~~~~~~~~p~~S-----pdg----~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spD------g 245 (417)
T TIGR02800 182 PQTITRSREPILSPAWS-----PDG----QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPD------G 245 (417)
T ss_pred CEEeecCCCceecccCC-----CCC----CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC------C
Confidence 35566677788888897 888 777776654 479999999886543 3445667778999999 7
Q ss_pred CeEE-EEeCCC--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEE
Q 000673 640 DCFL-SVGEDF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1358)
Q Consensus 640 ~~l~-S~s~D~--tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~ 713 (1358)
+.|+ +.+.++ .|.+||+.+++.. .+..+........|+|||++|+..+.. +....|++||+.+++..+
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~-----~g~~~iy~~d~~~~~~~~ 316 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDR-----GGSPQIYMMDADGGEVRR 316 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEE
Confidence 7555 455444 5888999887654 344454455678999999998854322 112479999998877543
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.70 E-value=0.0031 Score=71.11 Aligned_cols=158 Identities=13% Similarity=0.125 Sum_probs=98.4
Q ss_pred cccccCCccccccccCCCCCCCceeecccC-----CCcEEEEEeeccCcccCC---EEEEEEcCCcEEEEEecCcccCCC
Q 000673 479 DLTFCQDTVPRSEHVDSRQAGDGRDDFVHK-----EKIVSSSMVISESFYAPY---AIVYGFFSGEIEVIQFDLFERHNS 550 (1358)
Q Consensus 479 ~~t~~~s~i~~W~~~~~~~~~~~~~~~~~h-----~~~Vts~~~i~~~~~~p~---~lv~G~~dG~I~i~~~~~~~~~~~ 550 (1358)
..++.+-.|.+|+.+-....-. +..++++ +..||+ ..|+|. .+++.+..|+|++.+.....-.+.
T Consensus 179 ~lSADdLRINLWnlei~d~sFn-IVDIKP~nmEeLteVITs------aEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 179 FLSADDLRINLWNLEIIDQSFN-IVDIKPANMEELTEVITS------AEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred EeeccceeeeeccccccCCcee-EEEccccCHHHHHHHHhh------hccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 3445555667777654322111 1111222 234555 447775 488899999999976543222223
Q ss_pred CCCccc-cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeC-CCCcEEEEEecCC-------
Q 000673 551 PGASLK-VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDL-GSGNLITVMHHHV------- 621 (1358)
Q Consensus 551 ~~~~~d-~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl-~sg~~l~~~~~H~------- 621 (1358)
+.+... ...+....-|.+--..|..+.|+ ++| ++++|-+. -+|++||+ ...+++.++..|.
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs-----~sG----ryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFS-----HSG----RYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC 321 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEc-----cCC----cEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH
Confidence 333331 22233334455556789999997 777 88887543 69999999 4567777777663
Q ss_pred -----CcE---EEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC
Q 000673 622 -----APV---RQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1358)
Q Consensus 622 -----~~V---~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~ 659 (1358)
+.| ..+.|+-+ +..++||+..+.++++++..|
T Consensus 322 ~lYEnD~IfdKFec~~sg~------~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGN------DSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHhhccchhheeEEEEcCC------cceEecccccceEEEecCCCC
Confidence 222 35678877 779999999999999996544
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00017 Score=79.48 Aligned_cols=169 Identities=17% Similarity=0.090 Sum_probs=111.2
Q ss_pred ecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEE-EecCCCCEEEEEEeccc
Q 000673 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY-FLGHTGAVLCLAAHRMV 582 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~-l~gH~~~V~~l~~sp~~ 582 (1358)
.+++|.-...-.. .+...|+-+.+|+.||.+..|+... .++.+.. -+-|+..|.++.-+|
T Consensus 160 ~wk~He~E~Wta~---f~~~~pnlvytGgDD~~l~~~D~R~--------------p~~~i~~n~kvH~~GV~SI~ss~-- 220 (339)
T KOG0280|consen 160 TWKVHEFEAWTAK---FSDKEPNLVYTGGDDGSLSCWDIRI--------------PKTFIWHNSKVHTSGVVSIYSSP-- 220 (339)
T ss_pred cccccceeeeeee---cccCCCceEEecCCCceEEEEEecC--------------CcceeeecceeeecceEEEecCC--
Confidence 3455655544322 2345677899999999999955321 1122222 456899999998876
Q ss_pred cCCCCCccCcEEEEEeCCCcEEEEeCC-CCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc-
Q 000673 583 GTAKGWSFNEVLVSGSMDCSIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR- 660 (1358)
Q Consensus 583 ~~~dg~~~~~~L~Sgs~D~tI~lWDl~-sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~- 660 (1358)
|++ .++++|+.|-.|++||.+ -++++..-. -.|.|+.+..+|... ..++.++.-+-.++.+.+.+.
T Consensus 221 --~~~----~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~-----~~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 221 --PKP----TYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIF-----HRLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred --CCC----ceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhh-----hHHHHHHHhcCceEEEeccccc
Confidence 666 899999999999999998 456655432 248899999999831 234444455557787776543
Q ss_pred ----EEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEE-EEECCCCe
Q 000673 661 ----VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF-IWDVKTGA 710 (1358)
Q Consensus 661 ----~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~-vWd~~tg~ 710 (1358)
.......|.+-++.-.|+....+|++.++ . |+.++ +|-.-||+
T Consensus 289 e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF-----Y--Dk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 289 EFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSF-----Y--DKKIRQLWLHITGE 336 (339)
T ss_pred chheeeeccccccceeeccccccccceeeeeec-----c--ccceeeeeeeccCC
Confidence 34556677766777777666667775321 2 46755 78665554
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.64 E-value=7.5e-05 Score=97.88 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=119.9
Q ss_pred ccccCCccccccccCCCCCCCceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCC
Q 000673 480 LTFCQDTVPRSEHVDSRQAGDGRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNS 559 (1358)
Q Consensus 480 ~t~~~s~i~~W~~~~~~~~~~~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t 559 (1358)
++++++.++.|+-....+. ....-.+. .+|+.+.+...+. +...+-.||.+.+|...
T Consensus 2225 tgs~dgsv~~~~w~~~~~v--~~~rt~g~-s~vtr~~f~~qGn----k~~i~d~dg~l~l~q~~---------------- 2281 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQV--VCFRTAGN-SRVTRSRFNHQGN----KFGIVDGDGDLSLWQAS---------------- 2281 (2439)
T ss_pred ecCCCceEEEEeccCCCeE--EEeeccCc-chhhhhhhcccCC----ceeeeccCCceeecccC----------------
Confidence 4556667777765433211 11111222 5566655433332 24555567777774432
Q ss_pred ceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEE---eCCCcEEEEeCCC--C-cEEEEEecCCCcEEEEEeCCCC
Q 000673 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSG---SMDCSIRIWDLGS--G-NLITVMHHHVAPVRQIILSPPQ 633 (1358)
Q Consensus 560 ~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sg---s~D~tI~lWDl~s--g-~~l~~~~~H~~~V~~l~~spd~ 633 (1358)
.++....+.|....+...|- | ..++++ +.++.+.+||.-- + .+++ +.|.+.++++++.|.
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi-------~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~- 2347 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFI-------G----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPK- 2347 (2439)
T ss_pred CcceeccccCCccccceeee-------e----hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCc-
Confidence 33566667788888888885 1 455554 4678999999742 2 2444 789999999999999
Q ss_pred CCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEE
Q 000673 634 TEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1358)
Q Consensus 634 ~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~ 713 (1358)
.+.|+||+.+|.|++||++..+.++.++. ++ ...++++ |++- |.|+||++..-.+++
T Consensus 2348 -----~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~------~ss~--g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2348 -----HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVT------GSSE--GNIKIWRLSEFGLLH 2404 (2439)
T ss_pred -----ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeec------cCcc--cceEEEEccccchhh
Confidence 78999999999999999998887776664 45 6677774 3443 899999998877777
Q ss_pred EEeC
Q 000673 714 VLRG 717 (1358)
Q Consensus 714 ~l~G 717 (1358)
++.+
T Consensus 2405 ~~p~ 2408 (2439)
T KOG1064|consen 2405 TFPS 2408 (2439)
T ss_pred cCch
Confidence 7654
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.62 E-value=0.0033 Score=77.21 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=89.1
Q ss_pred EEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEe-CCCcEEEEeC--CC-CcEEEEEecCCCcEEEEEeCCCCCCCC
Q 000673 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDL--GS-GNLITVMHHHVAPVRQIILSPPQTEHP 637 (1358)
Q Consensus 562 ~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs-~D~tI~lWDl--~s-g~~l~~~~~H~~~V~~l~~spd~~~~~ 637 (1358)
..+...++.+......|+ ||| +.|+..+ .++...+|.+ .. +.....+..+.+.+....|+||
T Consensus 272 ~~~lt~~~~~~~~~p~wS-----PDG----~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPD----- 337 (428)
T PRK01029 272 PRRLLNEAFGTQGNPSFS-----PDG----TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPD----- 337 (428)
T ss_pred ceEeecCCCCCcCCeEEC-----CCC----CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCC-----
Confidence 344444444455677887 888 7666554 5776666644 32 3334556666667788999999
Q ss_pred CCCeEEEEeCC---CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEE
Q 000673 638 WSDCFLSVGED---FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1358)
Q Consensus 638 ~g~~l~S~s~D---~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~ 714 (1358)
|+.|+..+.+ ..|.+||+.+++......+ ...+....|+|||++|+....+ +.+..|++||+.+++..+.
T Consensus 338 -G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~-----~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 338 -GKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGN-----SNESELYLISLITKKTRKI 410 (428)
T ss_pred -CCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEEe
Confidence 8888766543 4699999999887544333 3456789999999998854322 2246899999988776544
Q ss_pred E
Q 000673 715 L 715 (1358)
Q Consensus 715 l 715 (1358)
.
T Consensus 411 t 411 (428)
T PRK01029 411 V 411 (428)
T ss_pred e
Confidence 4
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.61 E-value=0.00075 Score=75.86 Aligned_cols=171 Identities=15% Similarity=0.199 Sum_probs=111.8
Q ss_pred ccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCC
Q 000673 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTA 585 (1358)
Q Consensus 506 ~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~ 585 (1358)
..|+-.|.++-+-++..+ +++ ..|=.|-+|.+....+ +...-|++ | ..+..-+.-|++-.|||.++
T Consensus 161 NaHtyhiNSIS~NsD~Et----~lS-ADdLRINLWnlei~d~---sFnIVDIK---P-~nmEeLteVITsaEFhp~~c-- 226 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKET----FLS-ADDLRINLWNLEIIDQ---SFNIVDIK---P-ANMEELTEVITSAEFHPHHC-- 226 (433)
T ss_pred ccceeEeeeeeecCccce----Eee-ccceeeeeccccccCC---ceeEEEcc---c-cCHHHHHHHHhhhccCHhHc--
Confidence 568888888776666664 443 4555566644432111 11111111 1 00111234688889997554
Q ss_pred CCCccCcEEEEEeCCCcEEEEeCCCCcEE----EE------------EecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCC
Q 000673 586 KGWSFNEVLVSGSMDCSIRIWDLGSGNLI----TV------------MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1358)
Q Consensus 586 dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l----~~------------~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~ 649 (1358)
++++-.|.-|+|++-|++...+. .. |.+-...|..+.|++. |+++++-.. -
T Consensus 227 ------n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~s------GryilsRDy-l 293 (433)
T KOG1354|consen 227 ------NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHS------GRYILSRDY-L 293 (433)
T ss_pred ------cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccC------CcEEEEecc-c
Confidence 78898999999999999843211 11 1222356888999998 899987643 6
Q ss_pred cEEEEEC-CCCcEEEEecCCCC------------Cc---EEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeE
Q 000673 650 SVALASL-ETLRVERMFPGHPN------------YP---AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1358)
Q Consensus 650 tV~lwdl-~~~~~~~~l~gH~~------------~V---~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~ 711 (1358)
+|++||+ ...+++.+++-|.. .| ..++|+.++.++.+|+.. +.++|++...|..
T Consensus 294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~--------n~frvf~~~~gsk 363 (433)
T KOG1354|consen 294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYN--------NVFRVFNLARGSK 363 (433)
T ss_pred eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccccc--------ceEEEecCCCCcc
Confidence 8999999 56788888877642 23 478999999999976654 7999999776643
No 262
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.60 E-value=0.00017 Score=87.24 Aligned_cols=229 Identities=14% Similarity=0.048 Sum_probs=141.0
Q ss_pred ceeecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEec
Q 000673 501 GRDDFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHR 580 (1358)
Q Consensus 501 ~~~~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp 580 (1358)
..+.+.+|+..|+. +.-+..+|+-+++.+-|-.+..|+.... ..++..+..-...-+.|.|+.
T Consensus 106 Ief~lhghsraitd---~n~~~q~pdVlatcsvdt~vh~wd~rSp--------------~~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITD---INFNPQHPDVLATCSVDTYVHAWDMRSP--------------HRPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred eEEEEecCccceec---cccCCCCCcceeeccccccceeeeccCC--------------CcceeeeecccccCceeeecc
Confidence 34556788888888 3445566777888888888888543311 224445555556667888973
Q ss_pred cccCCCCCccCcEEEEEeCCCcEEEEeCCCC-cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC
Q 000673 581 MVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL 659 (1358)
Q Consensus 581 ~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg-~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~ 659 (1358)
.|+ +.+++ +..+.|++||++.| .+++.+++|...|+.++|..-. -..+.+.+.|++|+.||.++.
T Consensus 169 ----k~p----~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~-----~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 169 ----KDP----NVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK-----YSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ----cCc----chhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhh-----hhhhcccCCCCceeeeccccc
Confidence 233 55554 55678999999865 5788999999999999997541 346889999999999998754
Q ss_pred cE--EEEecCCCCCcEEEEEcCCCCEEEEEecC---CccccCCCCeEEEEECCC-CeEEEEEeCCCCceEEEeeeccccc
Q 000673 660 RV--ERMFPGHPNYPAKVVWDCPRGYIACLCRD---HSRTSDAVDVLFIWDVKT-GARERVLRGTASHSMFDHFCKGISM 733 (1358)
Q Consensus 660 ~~--~~~l~gH~~~V~~v~~spd~~~L~~g~~d---~sgssD~DgtV~vWd~~t-g~~~~~l~GH~~~v~~~~~~~~~~~ 733 (1358)
.. .+..+ ...+|+.-++-|-|.-.+..-.. +.--.+.++.-..|+..+ .+.+.+|.||.+.|+-..+-. .
T Consensus 235 t~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~---r 310 (1081)
T KOG0309|consen 235 TTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK---R 310 (1081)
T ss_pred ccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh---c
Confidence 32 22222 23456666666644321110000 000001122334455555 367899999999887544321 1
Q ss_pred ceeecceecCcccccCCccccccCCcEEEEeCCCc
Q 000673 734 NSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQND 768 (1358)
Q Consensus 734 ~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~~ 768 (1358)
..+.|.. -...-.|+.=++|.++|.|-+.+.
T Consensus 311 ~e~~~d~----d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 311 KECDGDY----DSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ccccCCC----CccceeEEEeecCCceEeeeccHH
Confidence 1222221 112234677788999999987544
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.59 E-value=0.09 Score=62.81 Aligned_cols=125 Identities=18% Similarity=0.296 Sum_probs=83.6
Q ss_pred CCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCC--CCcE--EEEEec----C--CCcEEEEEeCCCCCCCCCC
Q 000673 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNL--ITVMHH----H--VAPVRQIILSPPQTEHPWS 639 (1358)
Q Consensus 570 ~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~--sg~~--l~~~~~----H--~~~V~~l~~spd~~~~~~g 639 (1358)
...-..+.|+ ||| +...+..-.+++|.++++. .++. +..+.. . ......|.++|| |
T Consensus 191 G~GPRh~~f~-----pdg---~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd------g 256 (345)
T PF10282_consen 191 GSGPRHLAFS-----PDG---KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD------G 256 (345)
T ss_dssp TSSEEEEEE------TTS---SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT------S
T ss_pred CCCCcEEEEc-----CCc---CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC------C
Confidence 3456788898 677 2355677788899999988 4432 222221 1 125788999999 7
Q ss_pred CeEE-EEeCCCcEEEEECC--CCc--EEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC--CCCeEE
Q 000673 640 DCFL-SVGEDFSVALASLE--TLR--VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV--KTGARE 712 (1358)
Q Consensus 640 ~~l~-S~s~D~tV~lwdl~--~~~--~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~--~tg~~~ 712 (1358)
+++. +...+++|.+++++ +++ .+..++.....+..+.++|+|++|++++.+ ++.|.+|++ ++|.+.
T Consensus 257 ~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-------s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 257 RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-------SNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT-------TTEEEEEEEETTTTEEE
T ss_pred CEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC-------CCeEEEEEEeCCCCcEE
Confidence 7655 45567899999993 343 344444444568999999999999987754 368888865 678876
Q ss_pred EEE
Q 000673 713 RVL 715 (1358)
Q Consensus 713 ~~l 715 (1358)
..-
T Consensus 330 ~~~ 332 (345)
T PF10282_consen 330 PVG 332 (345)
T ss_dssp EEE
T ss_pred Eec
Confidence 553
No 264
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.53 E-value=0.0055 Score=75.44 Aligned_cols=121 Identities=19% Similarity=0.127 Sum_probs=81.4
Q ss_pred CCCCEEEEEEeccccCCCCCccCcEEE-EEeCCC--cEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEE
Q 000673 569 HTGAVLCLAAHRMVGTAKGWSFNEVLV-SGSMDC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1358)
Q Consensus 569 H~~~V~~l~~sp~~~~~dg~~~~~~L~-Sgs~D~--tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~ 645 (1358)
..+.+....|+ ||| +.|+ +.+.++ .|.+||+.+++. ..+..+........|+|| |+.++..
T Consensus 241 ~~g~~~~~~~S-----pDG----~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spD------g~~i~f~ 304 (430)
T PRK00178 241 FEGLNGAPAWS-----PDG----SKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKD------GRTLYFT 304 (430)
T ss_pred CCCCcCCeEEC-----CCC----CEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCC------CCEEEEE
Confidence 34445568887 788 6554 666665 588889988765 446666666777899999 7766655
Q ss_pred eC-C--CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeE
Q 000673 646 GE-D--FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1358)
Q Consensus 646 s~-D--~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~ 711 (1358)
+. + ..|.++|+.+++..+.... ........|+|+|++|+....+ ++...|++||+.+|+.
T Consensus 305 s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~-----~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 305 SDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQ-----DGNFHVAAQDLQRGSV 367 (430)
T ss_pred ECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEcc-----CCceEEEEEECCCCCE
Confidence 43 3 3577788888876443221 2234467899999999865432 1124699999998865
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.46 E-value=0.0027 Score=78.12 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=90.5
Q ss_pred EEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCC---CcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCC
Q 000673 563 RQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD---CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS 639 (1358)
Q Consensus 563 ~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D---~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g 639 (1358)
.+.+..|...+....|+ ||| +.|+..+.+ ..|.+||+.+++... +....+.+....|+|| |
T Consensus 191 ~~~l~~~~~~~~~p~wS-----pDG----~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpD------G 254 (430)
T PRK00178 191 AVTLLQSREPILSPRWS-----PDG----KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPD------G 254 (430)
T ss_pred ceEEecCCCceeeeeEC-----CCC----CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCC------C
Confidence 35566677889999998 888 777665543 368999999887533 3333455667899999 7
Q ss_pred CeEE-EEeCCC--cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEE
Q 000673 640 DCFL-SVGEDF--SVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1358)
Q Consensus 640 ~~l~-S~s~D~--tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~ 713 (1358)
+.++ +.+.++ .|.+||+++++.. .+..+........|+|||+.|+..+.. +.+..|+++|+.+|+..+
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~-----~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDR-----GGKPQIYKVNVNGGRAER 325 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEE
Confidence 7665 555555 5888899988754 355555556678999999988854321 122579999998887544
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.0005 Score=82.92 Aligned_cols=168 Identities=18% Similarity=0.202 Sum_probs=118.3
Q ss_pred cEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCcc
Q 000673 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSF 590 (1358)
Q Consensus 511 ~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~ 590 (1358)
.+.+...-....| ++||+.||.+++.+...........+.-...+...-++|.||.+.|.-+.|+. +
T Consensus 16 kL~c~~WNke~gy----IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-----~---- 82 (1189)
T KOG2041|consen 16 KLHCAEWNKESGY----IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-----N---- 82 (1189)
T ss_pred eEEEEEEcccCCe----EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-----c----
Confidence 3444444444456 99999999999988764433222212222233334578999999999999972 2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEE-EEecC
Q 000673 591 NEVLVSGSMDCSIRIWDLGSGNLITVMH--HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVE-RMFPG 667 (1358)
Q Consensus 591 ~~~L~Sgs~D~tI~lWDl~sg~~l~~~~--~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~-~~l~g 667 (1358)
.+.|-|...+|.|.+|-+..|.-...+. ...+.|.++.|..| |+.++-+-.||.|.+=.++..+.. ..+.|
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d------G~kIcIvYeDGavIVGsvdGNRIwgKeLkg 156 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD------GTKICIVYEDGAVIVGSVDGNRIWGKELKG 156 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC------CcEEEEEEccCCEEEEeeccceecchhcch
Confidence 3789999999999999998876433222 34567999999999 899999999999998888765543 23333
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 668 H~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
. ....+.|++|.+.++. +-+. |.+.++|.+
T Consensus 157 ~--~l~hv~ws~D~~~~Lf------~~an--ge~hlydnq 186 (1189)
T KOG2041|consen 157 Q--LLAHVLWSEDLEQALF------KKAN--GETHLYDNQ 186 (1189)
T ss_pred h--eccceeecccHHHHHh------hhcC--CcEEEeccc
Confidence 2 2457899999887762 3333 788999875
No 267
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.40 E-value=0.00096 Score=81.06 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=113.6
Q ss_pred CEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCC---CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCC
Q 000673 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS---GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1358)
Q Consensus 572 ~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~s---g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D 648 (1358)
.|-.+.|+|.. . .+.++++.+.-.+ .+|++.. ...-..+.+|+..|+.+-|+|.. -..+++++.|
T Consensus 69 ~vad~qws~h~---a---~~~wiVsts~qka-iiwnlA~ss~~aIef~lhghsraitd~n~~~q~-----pdVlatcsvd 136 (1081)
T KOG0309|consen 69 QVADVQWSPHP---A---KPYWIVSTSNQKA-IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQH-----PDVLATCSVD 136 (1081)
T ss_pred hhcceecccCC---C---CceeEEecCcchh-hhhhhhcCCccceEEEEecCccceeccccCCCC-----Ccceeecccc
Confidence 46667787521 1 2367888776655 5799863 23445678999999999999984 3689999999
Q ss_pred CcEEEEECCCC-cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC-eEEEEEeCCCCceEEEe
Q 000673 649 FSVALASLETL-RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG-ARERVLRGTASHSMFDH 726 (1358)
Q Consensus 649 ~tV~lwdl~~~-~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg-~~~~~l~GH~~~v~~~~ 726 (1358)
..|..||+++. .++..+..-...-..|+|+.-...+.. .+.. +.|+|||.+.| ..+..++||.+.+..+.
T Consensus 137 t~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla------sshg--~~i~vwd~r~gs~pl~s~K~~vs~vn~~~ 208 (1081)
T KOG0309|consen 137 TYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA------SSHG--NDIFVWDLRKGSTPLCSLKGHVSSVNSID 208 (1081)
T ss_pred ccceeeeccCCCcceeeeecccccCceeeecccCcchhh------hccC--CceEEEeccCCCcceEEecccceeeehHH
Confidence 99999999975 456666555556778999875444431 2333 78999999875 67889999998887665
Q ss_pred eecccccceeecceecCcccccCCccccccCCcEEEEeCCC
Q 000673 727 FCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQSQIQN 767 (1358)
Q Consensus 727 ~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~W~~~~ 767 (1358)
|.... -+.+++.+.|+|++.|+..+
T Consensus 209 fnr~~----------------~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 209 FNRFK----------------YSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred Hhhhh----------------hhhhcccCCCCceeeecccc
Confidence 54211 12334556699999998743
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.36 E-value=0.0056 Score=71.45 Aligned_cols=128 Identities=16% Similarity=0.249 Sum_probs=105.1
Q ss_pred ecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCC-cEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEE
Q 000673 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC-SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1358)
Q Consensus 567 ~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~-tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~ 645 (1358)
.+|.+.|.-..+. .++ +-++-|..|| .+-++|..+++. .++...-+.|.++..+|+ |+.++.+
T Consensus 356 v~~~~~VrY~r~~-----~~~----e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~d------GK~~vva 419 (668)
T COG4946 356 VGKKGGVRYRRIQ-----VDP----EGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPD------GKKVVVA 419 (668)
T ss_pred cCCCCceEEEEEc-----cCC----cceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCC------CcEEEEE
Confidence 4788888888875 344 5788899999 899999988774 556667789999999999 8999999
Q ss_pred eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEE
Q 000673 646 GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1358)
Q Consensus 646 s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~ 714 (1358)
.....+.+.|+++|.....-+...+-|+.+.|||++++++-+-.+ |..- ..|+++|+.+++....
T Consensus 420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~--gy~t--q~Iklydm~~~Kiy~v 484 (668)
T COG4946 420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE--GYYT--QSIKLYDMDGGKIYDV 484 (668)
T ss_pred cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc--ceee--eeEEEEecCCCeEEEe
Confidence 999999999999998866555556678999999999999977654 4443 6899999998887655
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.095 Score=64.15 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=75.6
Q ss_pred EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEE
Q 000673 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL 643 (1358)
Q Consensus 564 ~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~ 643 (1358)
+++.|-+++|.+++.+ +++|..|-..|+|.-+.+..+-...++.. ...|.++.++-+ ...++
T Consensus 498 kt~~G~~DpICAl~~s-----------dk~l~vareSG~I~rySl~nv~l~n~y~~-n~~~y~~~lNCn------stRlA 559 (1189)
T KOG2041|consen 498 KTLLGSKDPICALCIS-----------DKFLMVARESGGIYRYSLNNVVLTNSYPV-NPSIYSIKLNCN------STRLA 559 (1189)
T ss_pred eeeccCCCcceeeeec-----------ceEEEEEeccCceEEEEecceeeeecccc-CchheeEeeccC------cchhh
Confidence 5678889999999986 27999999999999999988776665543 356788888766 45666
Q ss_pred EEeCCCcEEEEECC---CCcEEE-EecCCCCCcEEEEEcCCCCEEE
Q 000673 644 SVGEDFSVALASLE---TLRVER-MFPGHPNYPAKVVWDCPRGYIA 685 (1358)
Q Consensus 644 S~s~D~tV~lwdl~---~~~~~~-~l~gH~~~V~~v~~spd~~~L~ 685 (1358)
....-|.+.+.|+. +|..+. .+......|+.+.|..|...++
T Consensus 560 iId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~ll 605 (1189)
T KOG2041|consen 560 IIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLL 605 (1189)
T ss_pred hhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHH
Confidence 66667788888876 344444 3333445688888887766554
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.35 E-value=0.0093 Score=73.27 Aligned_cols=126 Identities=16% Similarity=0.174 Sum_probs=78.9
Q ss_pred CCCCEEEEEEeccccCCCCCccCcEEEEEe-C----CCcEEEEeCCCC---cEEEEEecCCCcEEEEEeCCCCCCCCCCC
Q 000673 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-M----DCSIRIWDLGSG---NLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1358)
Q Consensus 569 H~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs-~----D~tI~lWDl~sg---~~l~~~~~H~~~V~~l~~spd~~~~~~g~ 640 (1358)
..+......|+ ||| +.|+-.+ . |-.+.+||+..+ +......++.+......|+|| |+
T Consensus 229 ~~g~~~~p~wS-----PDG----~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD------G~ 293 (428)
T PRK01029 229 LQGNQLMPTFS-----PRK----KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD------GT 293 (428)
T ss_pred CCCCccceEEC-----CCC----CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC------CC
Confidence 34445567887 898 6665443 2 334555787653 333333333344567899999 88
Q ss_pred eEEEEe-CCCcEEEEE--CCC-CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEE
Q 000673 641 CFLSVG-EDFSVALAS--LET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1358)
Q Consensus 641 ~l~S~s-~D~tV~lwd--l~~-~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~ 714 (1358)
.|+..+ .++...+|. +.. +.....+..+...+....|+|||++|+....+ ++...|++||+.+|+....
T Consensus 294 ~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-----~g~~~I~v~dl~~g~~~~L 366 (428)
T PRK01029 294 RLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-----KGVRQICVYDLATGRDYQL 366 (428)
T ss_pred EEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-----CCCcEEEEEECCCCCeEEc
Confidence 777665 466655654 432 33344455555567789999999999865432 1235899999998876543
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.35 E-value=0.011 Score=73.17 Aligned_cols=118 Identities=19% Similarity=0.134 Sum_probs=78.4
Q ss_pred CEEEEEEeccccCCCCCccCcEE-EEEeCCCc--EEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC-
Q 000673 572 AVLCLAAHRMVGTAKGWSFNEVL-VSGSMDCS--IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE- 647 (1358)
Q Consensus 572 ~V~~l~~sp~~~~~dg~~~~~~L-~Sgs~D~t--I~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~- 647 (1358)
......|+ ||| +.| ++.+.++. |.+||+.+++. ..+..+........|+|| |+.++..+.
T Consensus 263 ~~~~~~wS-----PDG----~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpD------G~~I~f~s~~ 326 (448)
T PRK04792 263 INGAPRFS-----PDG----KKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPD------GKSLIFTSER 326 (448)
T ss_pred CcCCeeEC-----CCC----CEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCC------CCEEEEEECC
Confidence 34467887 788 544 56677775 77788887764 445556666788899999 777665543
Q ss_pred CC--cEEEEECCCCcEEEE-ecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEE
Q 000673 648 DF--SVALASLETLRVERM-FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1358)
Q Consensus 648 D~--tV~lwdl~~~~~~~~-l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~ 712 (1358)
++ .|.++|+.+++..+. +.++ ......|+|||++|+....+ +....|+++|+.+|+..
T Consensus 327 ~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~-----~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 327 GGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMIMVNRT-----NGKFNIARQDLETGAMQ 387 (448)
T ss_pred CCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEEEEEec-----CCceEEEEEECCCCCeE
Confidence 33 466678888876443 3333 33467999999999864432 11136777898888653
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.0025 Score=78.16 Aligned_cols=138 Identities=18% Similarity=0.135 Sum_probs=103.4
Q ss_pred ccCCE-EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCc---cCcEEEEEe
Q 000673 523 YAPYA-IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS---FNEVLVSGS 598 (1358)
Q Consensus 523 ~~p~~-lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~---~~~~L~Sgs 598 (1358)
+.|.+ +++|+++ .|.+++ ..+-+.++++.-|+..|+.+.|.|.....|-.. ..-+|+++.
T Consensus 23 w~~~GLiAygshs-lV~VVD---------------s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 23 WSPSGLIAYGSHS-LVSVVD---------------SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred cCccceEEEecCc-eEEEEe---------------hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc
Confidence 66665 5677665 455532 345557788889999999999987543111101 235889999
Q ss_pred CCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCC-CeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE
Q 000673 599 MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS-DCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 677 (1358)
Q Consensus 599 ~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g-~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~ 677 (1358)
..|.|.+||...+..+..+..|.++|..+.|-|. +... ..++......++-+|+..+|+.+-....-.....++.+
T Consensus 87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~---rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~ 163 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPA---RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV 163 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhcCCCcchhheeeeec---cCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeee
Confidence 9999999999999999999999999999999876 2234 57778888899999999999887766544446667777
Q ss_pred cC
Q 000673 678 DC 679 (1358)
Q Consensus 678 sp 679 (1358)
+|
T Consensus 164 DP 165 (1062)
T KOG1912|consen 164 DP 165 (1062)
T ss_pred CC
Confidence 77
No 273
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.27 E-value=0.0051 Score=76.04 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=87.7
Q ss_pred EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeC-CC--cEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCC
Q 000673 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-DC--SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1358)
Q Consensus 564 ~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~-D~--tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~ 640 (1358)
+.+..+...+.+..|+ ||| +.|+..+. ++ .|.+||+.+++... +....+......|+|| |+
T Consensus 211 ~~l~~~~~~~~~p~wS-----PDG----~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD------G~ 274 (448)
T PRK04792 211 QMLLRSPEPLMSPAWS-----PDG----RKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD------GK 274 (448)
T ss_pred eEeecCCCcccCceEC-----CCC----CEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC------CC
Confidence 4555667788999998 888 77766543 33 58889998887532 3222334457899999 77
Q ss_pred eEE-EEeCCCc--EEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEE
Q 000673 641 CFL-SVGEDFS--VALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1358)
Q Consensus 641 ~l~-S~s~D~t--V~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~ 713 (1358)
.|+ +.+.++. |.++|+++++.. .+..+........|+|||++|+..+.. +....|+++|+.+|+..+
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~-----~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSER-----GGKPQIYRVNLASGKVSR 344 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC-----CCCceEEEEECCCCCEEE
Confidence 665 4566665 777898887654 444455566788999999998864321 222578888998887654
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.00061 Score=79.78 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=114.6
Q ss_pred CCCCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccc---eeEeeeCcCcCEEEeeeccccccccCccccccc
Q 000673 11 SGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIK---PVAMLCGHSAPIADLSICYPAMVSRDGKAEHWK 87 (1358)
Q Consensus 11 ~~~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~---~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~ 87 (1358)
.=+.|..+|.+++.-.+..-+++++.|.+|++|.++++. .+++ +-.+...|+.+|.++.|...
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg-D~~~tsaCQfTY~aHkk~i~~igfL~~------------- 795 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG-DEIGTSACQFTYQAHKKPIHDIGFLAD------------- 795 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc-CccccceeeeEhhhccCcccceeeeec-------------
Confidence 346778889999998899999999999999999999642 2232 45567799999999977433
Q ss_pred ccccCcccccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCc-eEEEEeeccCCcccccc
Q 000673 88 AENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRY-VCIGCCFIDTNQLSDHH 166 (1358)
Q Consensus 88 ~~~~~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~-~~l~c~~~~~~~~~~~~ 166 (1358)
..+++ |.||.+-+||---|+.+.+..-.|-.+....|.-++.-.+. +..+|..
T Consensus 796 --------------lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsa---------- 849 (1034)
T KOG4190|consen 796 --------------LRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSA---------- 849 (1034)
T ss_pred --------------cceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccc----------
Confidence 34454 45899999999888766554333333566667666653333 2334443
Q ss_pred cccccccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCC---cceEEEeecCCCCCcceEEEEecCCcEE
Q 000673 167 SFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGP---WKFMDVVSLGEDMGKHYGLMVDSVGRLQ 243 (1358)
Q Consensus 167 ~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~p---i~~l~v~~~~~d~~~~~~lla~s~dg~v 243 (1358)
..+|.++|..+.+-+..+.--+ ..+| +++++|... +..++++-.+|.+
T Consensus 850 ----------------------eSTVKl~DaRsce~~~E~kVcn-a~~Pna~~R~iaVa~~------GN~lAa~LSnGci 900 (1034)
T KOG4190|consen 850 ----------------------ESTVKLFDARSCEWTCELKVCN-APGPNALTRAIAVADK------GNKLAAALSNGCI 900 (1034)
T ss_pred ----------------------hhhheeeecccccceeeEEecc-CCCCchheeEEEeccC------cchhhHHhcCCcE
Confidence 4567778877776555554311 2333 788888743 4567777677777
Q ss_pred EEecccC
Q 000673 244 LVPISKE 250 (1358)
Q Consensus 244 kvW~l~~ 250 (1358)
.+-|..+
T Consensus 901 ~~LDaR~ 907 (1034)
T KOG4190|consen 901 AILDARN 907 (1034)
T ss_pred EEEecCC
Confidence 6655443
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.16 E-value=0.05 Score=73.89 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=79.8
Q ss_pred EEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecC---------------CCcEEEEEeCCCCCCCCC
Q 000673 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHH---------------VAPVRQIILSPPQTEHPW 638 (1358)
Q Consensus 574 ~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H---------------~~~V~~l~~spd~~~~~~ 638 (1358)
++++|+| .++ .++++.+.++.|++||..++... .+.+. -...+.++++|+
T Consensus 686 ~gVa~dp----~~g----~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd------ 750 (1057)
T PLN02919 686 WDVCFEP----VNE----KVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPD------ 750 (1057)
T ss_pred eEEEEec----CCC----eEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCC------
Confidence 5788872 144 78889899999999999877542 33221 123456889998
Q ss_pred CC-eEEEEeCCCcEEEEECCCCcEEEEecC---------------------CCCCcEEEEEcCCCCEEEEEecCCccccC
Q 000673 639 SD-CFLSVGEDFSVALASLETLRVERMFPG---------------------HPNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1358)
Q Consensus 639 g~-~l~S~s~D~tV~lwdl~~~~~~~~l~g---------------------H~~~V~~v~~spd~~~L~~g~~d~sgssD 696 (1358)
++ .+++-+.++.|++||++++.......+ .-..+..++++++|+.+++- +.
T Consensus 751 G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD------s~- 823 (1057)
T PLN02919 751 LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD------SY- 823 (1057)
T ss_pred CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE------CC-
Confidence 66 666777889999999987654211100 11235689999999866632 22
Q ss_pred CCCeEEEEECCCCeEEE
Q 000673 697 AVDVLFIWDVKTGARER 713 (1358)
Q Consensus 697 ~DgtV~vWd~~tg~~~~ 713 (1358)
++.|++||..++....
T Consensus 824 -N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 824 -NHKIKKLDPATKRVTT 839 (1057)
T ss_pred -CCEEEEEECCCCeEEE
Confidence 3899999998876653
No 276
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.11 E-value=0.0025 Score=79.58 Aligned_cols=138 Identities=13% Similarity=0.181 Sum_probs=106.9
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeC--------
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSM-------- 599 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~-------- 599 (1358)
+.+|...|+|.+. |..+.+.++++..|++.|..+..+ | +.|+|+|.
T Consensus 190 lf~G~t~G~V~Lr---------------D~~s~~~iht~~aHs~siSDfDv~-------G----NlLitCG~S~R~~~l~ 243 (1118)
T KOG1275|consen 190 LFCGDTRGTVFLR---------------DPNSFETIHTFDAHSGSISDFDVQ-------G----NLLITCGYSMRRYNLA 243 (1118)
T ss_pred EEeecccceEEee---------------cCCcCceeeeeeccccceeeeecc-------C----CeEEEeeccccccccc
Confidence 8999999999993 455777899999999999998875 4 88999884
Q ss_pred -CCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECC---CC-cEEEEecCCCCCcEE
Q 000673 600 -DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE---TL-RVERMFPGHPNYPAK 674 (1358)
Q Consensus 600 -D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~---~~-~~~~~l~gH~~~V~~ 674 (1358)
|.-|+|||++..+.+.-+.-|.++ .-+.|+|.- ...++.++..|...+-|.. .. .-+..+..-.+.+.+
T Consensus 244 ~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl-----~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~ 317 (1118)
T KOG1275|consen 244 MDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL-----TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA 317 (1118)
T ss_pred ccchhhhhhhhhhhccCCcccccCc-hhhhhcccc-----cceEEEEecccceeeccccccCCCccceeEEccCCCccee
Confidence 667899999988877766666665 567888873 3678888889999999933 22 123334334456899
Q ss_pred EEEcCCCCEEEEEecCCccccCCCCeEEEEE
Q 000673 675 VVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1358)
Q Consensus 675 v~~spd~~~L~~g~~d~sgssD~DgtV~vWd 705 (1358)
+.++++++.++.| |.+|.|.+|-
T Consensus 318 fDiSsn~~alafg--------d~~g~v~~wa 340 (1118)
T KOG1275|consen 318 FDISSNGDALAFG--------DHEGHVNLWA 340 (1118)
T ss_pred EEecCCCceEEEe--------cccCcEeeec
Confidence 9999999999953 3358999996
No 277
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.00025 Score=87.14 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=116.0
Q ss_pred ecccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEecccc
Q 000673 504 DFVHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVG 583 (1358)
Q Consensus 504 ~~~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~ 583 (1358)
.|..|+..-|+..|.....+ |+.|++.|.|++.+ +.+|.......+|...|+-+.-+
T Consensus 1096 ~frd~~~~fTc~afs~~~~h----L~vG~~~Geik~~n---------------v~sG~~e~s~ncH~SavT~vePs---- 1152 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNH----LAVGSHAGEIKIFN---------------VSSGSMEESVNCHQSAVTLVEPS---- 1152 (1516)
T ss_pred hhhccccceeeEEeecCCce----EEeeeccceEEEEE---------------ccCcccccccccccccccccccc----
Confidence 35667788899998888888 99999999999944 44677777888999999998743
Q ss_pred CCCCCccCcEEEEEeCCC-cEEEEeCC-CCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcE
Q 000673 584 TAKGWSFNEVLVSGSMDC-SIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1358)
Q Consensus 584 ~~dg~~~~~~L~Sgs~D~-tI~lWDl~-sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~ 661 (1358)
-|| ...|.|.+... -..+|++. ++.+.|+|.+ -.++.|+.. .+.-+-|..-..+.+||++++.+
T Consensus 1153 -~dg---s~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~------~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1153 -VDG---STQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNS------LQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred -CCc---ceeeeeccccCchHHHhccccccCccccccc----cceeehhhh------HHHHHhcccccceEEEecccCcH
Confidence 566 23455555544 56799986 4667788765 346778765 22223333334689999999988
Q ss_pred EEE-ecCC---CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCC
Q 000673 662 ERM-FPGH---PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGT 718 (1358)
Q Consensus 662 ~~~-l~gH---~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH 718 (1358)
+.+ +.+- ...-+...|+|++.+++ +||. +||++..+.++.|.--
T Consensus 1219 l~tylt~~~~~~y~~n~a~FsP~D~LIl-----------ndGv--LWDvR~~~aIh~FD~f 1266 (1516)
T KOG1832|consen 1219 LQTYLTDTVTSSYSNNLAHFSPCDTLIL-----------NDGV--LWDVRIPEAIHRFDQF 1266 (1516)
T ss_pred HHHhcCcchhhhhhccccccCCCcceEe-----------eCce--eeeeccHHHHhhhhhh
Confidence 766 3322 22236889999999988 1344 7999988777666433
No 278
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.99 E-value=0.002 Score=80.38 Aligned_cols=142 Identities=16% Similarity=0.184 Sum_probs=106.4
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCcccccccCCCCeEE
Q 000673 27 QPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALI 106 (1358)
Q Consensus 27 dg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~L~ 106 (1358)
+++.|..|...|+|.+-|.++ .++.+.+-.|++.|.++ +-.|+.|+
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s-----~~~iht~~aHs~siSDf-----------------------------Dv~GNlLi 231 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNS-----FETIHTFDAHSGSISDF-----------------------------DVQGNLLI 231 (1118)
T ss_pred cCcEEEeecccceEEeecCCc-----Cceeeeeeccccceeee-----------------------------eccCCeEE
Confidence 679999999999999999997 78999999999999888 55678999
Q ss_pred EeeC---------CCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCceEEEEeeccCCccccccccccccccccc
Q 000673 107 SACT---------DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQLSDHHSFESVEGDLVS 177 (1358)
Q Consensus 107 S~s~---------Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~~~~~~~~~g~~~s 177 (1358)
|++. |..|+|||+..-+.+.-+..| ..|..++.+|.-+...++..+.
T Consensus 232 tCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S~s--------------------- 287 (1118)
T KOG1275|consen 232 TCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTSQS--------------------- 287 (1118)
T ss_pred EeecccccccccccchhhhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEecc---------------------
Confidence 9884 778899999987777666666 7788888888665545444433
Q ss_pred ccccCCCCCCCCceEEEEeCCCceE--E-EEEEecccccCC-cceEEEeecCCCCCcceEEEEecCCcEEEEec
Q 000673 178 EDKEVPMKNPPKCTLVIVDTYGLTI--V-QTVFHGNLSIGP-WKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPI 247 (1358)
Q Consensus 178 ~d~~~~~~~~~~~~I~i~D~~tl~v--~-~~l~s~~~~~~p-i~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~ 247 (1358)
+..++.|+.++.- . ....+ ..++ +.+++|+.. ++.++-+-.+|.+-+|.
T Consensus 288 ------------Gq~q~vd~~~lsNP~~~~~~v~---p~~s~i~~fDiSsn------~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 288 ------------GQFQFVDTATLSNPPAGVKMVN---PNGSGISAFDISSN------GDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ------------cceeeccccccCCCccceeEEc---cCCCcceeEEecCC------CceEEEecccCcEeeec
Confidence 4556666444321 0 11111 1222 888888865 66899999999999999
No 279
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.98 E-value=0.62 Score=55.68 Aligned_cols=209 Identities=12% Similarity=0.145 Sum_probs=113.0
Q ss_pred eEEEEEecCCCEEEEEeC----CCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCcc
Q 000673 19 VTATSALTQPPTLYTGGS----DGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNV 94 (1358)
Q Consensus 19 Vtava~Spdg~~LaTGs~----DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1358)
-+.++++|++++|++..+ +|.|..|++... ....+.+....-....-..+++
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-~g~L~~~~~~~~~g~~p~~i~~----------------------- 94 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-TGTLTLLNSVPSGGSSPCHIAV----------------------- 94 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-TTEEEEEEEEEESSSCEEEEEE-----------------------
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-cceeEEeeeeccCCCCcEEEEE-----------------------
Confidence 456889999999999876 579999999851 0223333333311222334533
Q ss_pred cccccCCCCeEEEeeC-CCeEEEEECCC-CceEEEeeC-------C---CCCCCCceeeeeCCCCCceEEEEeeccCCcc
Q 000673 95 MGKSSLDNGALISACT-DGVLCVWSRSS-GHCRRRRKL-------P---PWVGSPSVICTLPSNPRYVCIGCCFIDTNQL 162 (1358)
Q Consensus 95 ~~~~s~d~~~L~S~s~-Dg~l~lWdl~~-G~c~~~~~l-------~---~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~ 162 (1358)
++++++|+.+.. +|.+.++++.+ |+....... + .....|.+-..+.++.+++.+...+
T Consensus 95 ----~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------ 164 (345)
T PF10282_consen 95 ----DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------ 164 (345)
T ss_dssp ----CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------
T ss_pred ----ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------
Confidence 688999999885 99999999986 665544211 0 0012222222223333444443333
Q ss_pred cccccccccccccccccccCCCCCCCCceEEEEeCCCce--EE--EEEEecccccCC-cceEEEeecCCCCCcceEEEEe
Q 000673 163 SDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLT--IV--QTVFHGNLSIGP-WKFMDVVSLGEDMGKHYGLMVD 237 (1358)
Q Consensus 163 ~~~~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~--v~--~~l~s~~~~~~p-i~~l~v~~~~~d~~~~~~lla~ 237 (1358)
...|.+++..... +. ..+.- ..+. .+.|.|.. +++ .+.+..
T Consensus 165 --------------------------~D~v~~~~~~~~~~~l~~~~~~~~---~~G~GPRh~~f~p---dg~--~~Yv~~ 210 (345)
T PF10282_consen 165 --------------------------ADRVYVYDIDDDTGKLTPVDSIKV---PPGSGPRHLAFSP---DGK--YAYVVN 210 (345)
T ss_dssp --------------------------TTEEEEEEE-TTS-TEEEEEEEEC---STTSSEEEEEE-T---TSS--EEEEEE
T ss_pred --------------------------CCEEEEEEEeCCCceEEEeecccc---ccCCCCcEEEEcC---CcC--EEEEec
Confidence 1245555543322 32 22221 2222 56777763 333 366777
Q ss_pred cCCcEEEEecccCcccccccCCcceecCCcccceEecc-Ccc--cCceEEEEecCCcEEEEEecCce---EEee
Q 000673 238 SVGRLQLVPISKESHLDREEGNGLCKSSSQLDMAILQN-GVV--EGGHLVSVATCGNIIALVLKDHC---IFRL 305 (1358)
Q Consensus 238 s~dg~vkvW~l~~~~~~~~~~~~l~e~~~~~~~~~~~~-~~~--~~v~~vs~s~dg~~~~~~~~~~~---i~d~ 305 (1358)
..++.+.++++...+ +. +. ....+.... ... .....|.++|||+.+........ +|++
T Consensus 211 e~s~~v~v~~~~~~~--g~----~~----~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSD--GS----LT----EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp TTTTEEEEEEEETTT--TE----EE----EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred CCCCcEEEEeecccC--Cc----ee----EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 889999999888421 11 10 011111111 111 14678999999998877766543 7777
No 280
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0015 Score=75.88 Aligned_cols=169 Identities=18% Similarity=0.210 Sum_probs=118.1
Q ss_pred CCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCC
Q 000673 508 KEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKG 587 (1358)
Q Consensus 508 h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg 587 (1358)
|...|+.+.. .-..| ++.++.||.++.|.-.. ..--+.+..+..|-+.|.+++.+ .||
T Consensus 8 hrd~i~hv~~-tka~f----iiqASlDGh~KFWkKs~------------isGvEfVKhFraHL~~I~sl~~S-----~dg 65 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKF----IIQASLDGHKKFWKKSR------------ISGVEFVKHFRAHLGVILSLAVS-----YDG 65 (558)
T ss_pred ccceeeeEee-ehhhe----EEeeecchhhhhcCCCC------------ccceeehhhhHHHHHHHHhhhcc-----ccc
Confidence 6666776443 23345 89999999999844221 11123455677788888888776 566
Q ss_pred CccCcEEEEEeC-CCcEEEEeCCCCcE------------------------------------------------EEEEe
Q 000673 588 WSFNEVLVSGSM-DCSIRIWDLGSGNL------------------------------------------------ITVMH 618 (1358)
Q Consensus 588 ~~~~~~L~Sgs~-D~tI~lWDl~sg~~------------------------------------------------l~~~~ 618 (1358)
.++.|++. |..++++|+..-.. ...-.
T Consensus 66 ----~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 66 ----WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred ----eeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 77788777 88888887753110 11112
Q ss_pred cCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCC------CcE---------EEEecCCCCCcEEEEEcCCCCE
Q 000673 619 HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET------LRV---------ERMFPGHPNYPAKVVWDCPRGY 683 (1358)
Q Consensus 619 ~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~------~~~---------~~~l~gH~~~V~~v~~spd~~~ 683 (1358)
-|..+|.++.+.|. +++++|....|.|..|..+. .+. +..++.....+.++.|+|++..
T Consensus 142 lH~sPV~~i~y~qa------~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q 215 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQA------GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ 215 (558)
T ss_pred cccCceEEEEeecc------ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence 47889999999998 89999999999999999873 111 2223344557789999999999
Q ss_pred EEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 684 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 684 L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
+.+- + .|..||+++.++|++++.+.
T Consensus 216 istl-------~-~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 216 ISTL-------N-PDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccc-------C-cccEEEEEEeccchhhhhhh
Confidence 9842 2 36999999999999887764
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.93 E-value=0.095 Score=62.11 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=55.3
Q ss_pred EecCCCEEEEEeC----------CCcEEEEEccCCCCCccceeEeee-C--------cCcCEEEeeeccccccccCcccc
Q 000673 24 ALTQPPTLYTGGS----------DGSILWWSFSDSSYSEIKPVAMLC-G--------HSAPIADLSICYPAMVSRDGKAE 84 (1358)
Q Consensus 24 ~Spdg~~LaTGs~----------DG~I~lWdl~~~~~~~~~~~~~L~-G--------H~~~Vt~l~~~~~~~~~~~~~~~ 84 (1358)
+||||+.|+.+.. +..|.+||+.+ .+++..+. | -.-....+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-----~~~~~~i~~p~~p~~~~~~~~~~~~l--------------- 112 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-----HLPIADIELPEGPRFLVGTYPWMTSL--------------- 112 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-----CcEEeEEccCCCchhhccCccceEEE---------------
Confidence 9999999998865 78999999997 45554444 1 11112222
Q ss_pred cccccccCcccccccCCCCeEEEee-C-CCeEEEEECCCCceEEEeeCC
Q 000673 85 HWKAENSSNVMGKSSLDNGALISAC-T-DGVLCVWSRSSGHCRRRRKLP 131 (1358)
Q Consensus 85 ~~~~~~~~~~~~~~s~d~~~L~S~s-~-Dg~l~lWdl~~G~c~~~~~l~ 131 (1358)
++||++|..+. . ++.|-+.|+.+++.+.....|
T Consensus 113 --------------s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 113 --------------TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred --------------CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 89999888665 3 899999999999999887765
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.93 E-value=0.042 Score=74.64 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=82.8
Q ss_pred CEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEec-------------CC--------CcEEEEEeC
Q 000673 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHH-------------HV--------APVRQIILS 630 (1358)
Q Consensus 572 ~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~-------------H~--------~~V~~l~~s 630 (1358)
..+.++++ ||| +.++++-+.++.|++||+.++.......+ +. ..-..++++
T Consensus 741 ~P~GIavs-----pdG---~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 741 QPSGISLS-----PDL---KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred CccEEEEe-----CCC---CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 34568887 666 23777888889999999987653211100 00 123577888
Q ss_pred CCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEec-------------CCCCCcEEEEEcCCCCEEEEEecCCccccCC
Q 000673 631 PPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-------------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDA 697 (1358)
Q Consensus 631 pd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~-------------gH~~~V~~v~~spd~~~L~~g~~d~sgssD~ 697 (1358)
|+ |+.+++-..++.|++||..++....... ++-..+..|+++++|+.+++- +.
T Consensus 813 ~d------G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD------t~-- 878 (1057)
T PLN02919 813 KD------GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD------TN-- 878 (1057)
T ss_pred CC------CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE------CC--
Confidence 88 8889999999999999998877653321 122357899999999876631 22
Q ss_pred CCeEEEEECCCCeE
Q 000673 698 VDVLFIWDVKTGAR 711 (1358)
Q Consensus 698 DgtV~vWd~~tg~~ 711 (1358)
++.|++||+++++.
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 48999999999875
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.0099 Score=73.87 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=104.1
Q ss_pred EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000673 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1358)
Q Consensus 527 ~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lW 606 (1358)
.++.|.++|.+++..++. .+ .+...|+.. . .+| .+++|||.||+|.|-
T Consensus 51 ~~~~GtH~g~v~~~~~~~----------------~~-~~~~~~s~~------~-----~~G----ey~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQG----------------NP-KTNFDHSSS------I-----LEG----EYVASCSDDGKVVIG 98 (846)
T ss_pred eeeeccccceEEEEecCC----------------cc-ccccccccc------c-----cCC----ceEEEecCCCcEEEe
Confidence 389999999999966541 12 222334433 1 456 999999999999999
Q ss_pred eCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECC---CCcEEEEecCCCCCcEEEEEcCCCCE
Q 000673 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE---TLRVERMFPGHPNYPAKVVWDCPRGY 683 (1358)
Q Consensus 607 Dl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~---~~~~~~~l~gH~~~V~~v~~spd~~~ 683 (1358)
.+.+.+..+++.- .-++.+++++|+- .+...+.+++|+.-| +.++.-+ ....+ .+..-.++|.++.|+ |++
T Consensus 99 sl~~~~~~~~~df-~rpiksial~Pd~-~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~l 172 (846)
T KOG2066|consen 99 SLFTDDEITQYDF-KRPIKSIALHPDF-SRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNL 172 (846)
T ss_pred eccCCccceeEec-CCcceeEEeccch-hhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcE
Confidence 9999888777644 4689999999982 123357899999888 6666522 22222 333345789999996 778
Q ss_pred EEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCce
Q 000673 684 IACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHS 722 (1358)
Q Consensus 684 L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v 722 (1358)
++- .. |--|+|+|..+++.+..+.-....+
T Consensus 173 IAW-------an--d~Gv~vyd~~~~~~l~~i~~p~~~~ 202 (846)
T KOG2066|consen 173 IAW-------AN--DDGVKVYDTPTRQRLTNIPPPSQSV 202 (846)
T ss_pred EEE-------ec--CCCcEEEeccccceeeccCCCCCCC
Confidence 873 22 3568999999988887766444333
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.09 Score=66.15 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=81.8
Q ss_pred cEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCcc
Q 000673 511 IVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSF 590 (1358)
Q Consensus 511 ~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~ 590 (1358)
+++++.+..+... +|+|+.||.|..+.-|.... . |........-.++||.|++. .|+
T Consensus 127 p~s~l~Vs~~l~~----Iv~Gf~nG~V~~~~GDi~RD---------r--gsr~~~~~~~~~pITgL~~~-----~d~--- 183 (933)
T KOG2114|consen 127 PASSLAVSEDLKT----IVCGFTNGLVICYKGDILRD---------R--GSRQDYSHRGKEPITGLALR-----SDG--- 183 (933)
T ss_pred cceEEEEEccccE----EEEEecCcEEEEEcCcchhc---------c--ccceeeeccCCCCceeeEEe-----cCC---
Confidence 4455554455555 99999999999976553322 1 11112222235789999996 444
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcE--EEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEec-C
Q 000673 591 NEVLVSGSMDCSIRIWDLGSGNL--ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP-G 667 (1358)
Q Consensus 591 ~~~L~Sgs~D~tI~lWDl~sg~~--l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~-g 667 (1358)
.-++-...-..|.+|.+. |+. +..+..|+..++|..|++. ...+++++ +..+.+||....++...|. |
T Consensus 184 -~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~------t~qfIca~-~e~l~fY~sd~~~~cfaf~~g 254 (933)
T KOG2114|consen 184 -KSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDG------TYQFICAG-SEFLYFYDSDGRGPCFAFEVG 254 (933)
T ss_pred -ceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCC------CccEEEec-CceEEEEcCCCcceeeeecCC
Confidence 321222223568999987 443 4557888899999999987 33344443 3569999988777767777 7
Q ss_pred CCCC
Q 000673 668 HPNY 671 (1358)
Q Consensus 668 H~~~ 671 (1358)
|...
T Consensus 255 ~kk~ 258 (933)
T KOG2114|consen 255 EKKE 258 (933)
T ss_pred CeEE
Confidence 7643
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.77 E-value=0.0029 Score=69.00 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=62.4
Q ss_pred CEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEE-EEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCc
Q 000673 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1358)
Q Consensus 572 ~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l-~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~t 650 (1358)
.|++++-||+ ..++++.|+.||.+-+||.+..... ..+..|..+++.+-|+|.+ +..|.+++.||+
T Consensus 181 ~v~~l~~hp~--------qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~-----p~~Lft~sedGs 247 (319)
T KOG4714|consen 181 AVTALCSHPA--------QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN-----PEHLFTCSEDGS 247 (319)
T ss_pred cchhhhCCcc--------cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC-----chheeEecCCCc
Confidence 4999998852 2379999999999999999877543 3467899999999999985 678999999999
Q ss_pred EEEEECCC
Q 000673 651 VALASLET 658 (1358)
Q Consensus 651 V~lwdl~~ 658 (1358)
+.-||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999774
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.74 E-value=0.51 Score=56.96 Aligned_cols=109 Identities=12% Similarity=-0.020 Sum_probs=75.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCC
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNY 671 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~ 671 (1358)
..+..++.++.+..||..+|+.+...... . .....+ + +..+..++.|+.+..+|..+|+.+.........
T Consensus 242 ~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~~--~------~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPAV--D------DNRLYVTDADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred CEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCceE--e------CCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence 57778889999999999999987765421 1 111111 2 567888889999999999999887655322111
Q ss_pred -cEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCC
Q 000673 672 -PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTAS 720 (1358)
Q Consensus 672 -V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~ 720 (1358)
...... .+..+++++. ||.|+++|.++|+.+..+..+..
T Consensus 312 ~~ssp~i--~g~~l~~~~~--------~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 312 QLTAPAV--VGGYLVVGDF--------EGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred ccccCEE--ECCEEEEEeC--------CCEEEEEECCCCCEEEEEEcCCC
Confidence 122222 3567775433 48999999999999988876553
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.72 E-value=0.0027 Score=69.23 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=67.8
Q ss_pred cEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcE-EEEecCCCCCcEEEEEcCC
Q 000673 602 SIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCP 680 (1358)
Q Consensus 602 tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~-~~~l~gH~~~V~~v~~spd 680 (1358)
..+.|+++..+.+..-..-...|.+++-+|.. .+.+++|+.||.+-+||.+.... ...+..|..+++.|-|+|.
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~q-----q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQ-----QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCccc-----ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence 34567766544333222223459999999873 46889999999999999998743 4556789999999999994
Q ss_pred -CCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 681 -RGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 681 -~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
+..|.+.+ +||.+-.||..+
T Consensus 235 ~p~~Lft~s--------edGslw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCS--------EDGSLWHWDAST 255 (319)
T ss_pred CchheeEec--------CCCcEEEEcCCC
Confidence 45666422 359999999865
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.71 E-value=0.012 Score=65.59 Aligned_cols=224 Identities=13% Similarity=0.147 Sum_probs=123.2
Q ss_pred CcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCC------------CCEEEEE
Q 000673 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHT------------GAVLCLA 577 (1358)
Q Consensus 510 ~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~------------~~V~~l~ 577 (1358)
..|+++.|...+.| +++|-..|.+.+..-. ....+ .-+....|++|. ..|+.+.
T Consensus 27 d~ItaVefd~tg~Y----latGDkgGRVvlfer~--~s~~c--------eykf~teFQshe~EFDYLkSleieEKin~I~ 92 (460)
T COG5170 27 DKITAVEFDETGLY----LATGDKGGRVVLFERE--KSYGC--------EYKFFTEFQSHELEFDYLKSLEIEEKINAIE 92 (460)
T ss_pred ceeeEEEeccccce----EeecCCCceEEEeecc--ccccc--------chhhhhhhcccccchhhhhhccHHHHhhhee
Confidence 56888887666667 8888777888773321 11100 011223345553 4578888
Q ss_pred EeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCc------------------------------------------EEE
Q 000673 578 AHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN------------------------------------------LIT 615 (1358)
Q Consensus 578 ~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~------------------------------------------~l~ 615 (1358)
|.. +.| ...++-...|++|++|-+.... +.+
T Consensus 93 w~~----~t~---r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 93 WFD----DTG---RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred eec----CCC---cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 862 333 3455555689999999875320 011
Q ss_pred EE-ecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcE---EEEecCCC-----CCcEEEEEcCCCCEEEE
Q 000673 616 VM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV---ERMFPGHP-----NYPAKVVWDCPRGYIAC 686 (1358)
Q Consensus 616 ~~-~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~---~~~l~gH~-----~~V~~v~~spd~~~L~~ 686 (1358)
.+ ..|.--++++.|..| .+.++|+ .|-.|.+|+++.... +..+..|. .-|++..|+|....+.
T Consensus 166 vyaNaH~yhiNSiS~NsD------~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f- 237 (460)
T COG5170 166 VYANAHPYHINSISFNSD------KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF- 237 (460)
T ss_pred eccccceeEeeeeeecCc------hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE-
Confidence 12 346667889999888 5666665 678899999875322 33344453 2467889999765443
Q ss_pred EecCCccccCCCCeEEEEECCCCeE-E---EEEeCCCCceEEEeeecccccceeecceecCcccccCCccccccCCcEEE
Q 000673 687 LCRDHSRTSDAVDVLFIWDVKTGAR-E---RVLRGTASHSMFDHFCKGISMNSISGSVLNGNTSVSSLLLPIHEDGTFRQ 762 (1358)
Q Consensus 687 g~~d~sgssD~DgtV~vWd~~tg~~-~---~~l~GH~~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~l~~~~~D~tvr~ 762 (1358)
+.+...|.|++-|+|...+ . +.+.-..+.+-.. |..+ +..++-+=.++..+.++..-.=.|+++
T Consensus 238 ------mYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~-ff~e-----ivsSISD~kFs~ngryIlsRdyltvki 305 (460)
T COG5170 238 ------MYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVD-FFEE-----IVSSISDFKFSDNGRYILSRDYLTVKI 305 (460)
T ss_pred ------EEecCCCcEEehhhhhhhhccCchhhhhhccCcccch-hHHH-----HhhhhcceEEcCCCcEEEEeccceEEE
Confidence 1222238999999985322 1 1111111122111 2111 111111224444554444333378999
Q ss_pred EeCCCccccccc
Q 000673 763 SQIQNDERGVAF 774 (1358)
Q Consensus 763 W~~~~~~~~~~~ 774 (1358)
|+.+....++-.
T Consensus 306 wDvnm~k~pikT 317 (460)
T COG5170 306 WDVNMAKNPIKT 317 (460)
T ss_pred EecccccCCcee
Confidence 997654444433
No 289
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.66 E-value=0.0068 Score=73.53 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=60.7
Q ss_pred CCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCc
Q 000673 14 PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSN 93 (1358)
Q Consensus 14 ~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1358)
|-...|.|.+++|+...|+.|+.||.|++||... .+..+.-+.-..+.++.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-------~~t~~~ka~~~P~~iaW---------------------- 307 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR-------GVTLLAKAEFIPTLIAW---------------------- 307 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCC-------CeeeeeeecccceEEEE----------------------
Confidence 5567899999999999999999999999999985 12233333344555633
Q ss_pred ccccccCCCCeEEEeeCCCeEEEEECCCCc
Q 000673 94 VMGKSSLDNGALISACTDGVLCVWSRSSGH 123 (1358)
Q Consensus 94 ~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~ 123 (1358)
.|+|..++.++.-|+|.+||+.-..
T Consensus 308 -----Hp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 308 -----HPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred -----cCCCcEEEEEcCCceEEEEEeecCc
Confidence 7899999999999999999998543
No 290
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.66 E-value=0.012 Score=71.61 Aligned_cols=81 Identities=16% Similarity=0.069 Sum_probs=63.6
Q ss_pred cCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCC
Q 000673 619 HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAV 698 (1358)
Q Consensus 619 ~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~D 698 (1358)
.....|.|++++|+ .+.++.|+.||+|.+||...+... +..+.-.++.++|||+|.++++|+. -
T Consensus 257 pL~s~v~~ca~sp~------E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~--------q 320 (545)
T PF11768_consen 257 PLPSQVICCARSPS------EDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSE--------Q 320 (545)
T ss_pred ecCCcceEEecCcc------cceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcC--------C
Confidence 35678999999999 789999999999999998776433 3334456789999999999997543 2
Q ss_pred CeEEEEECCCCeEEEEE
Q 000673 699 DVLFIWDVKTGARERVL 715 (1358)
Q Consensus 699 gtV~vWd~~tg~~~~~l 715 (1358)
|.+.+||+.-...-..+
T Consensus 321 GelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 321 GELQCFDMALSPIKMQL 337 (545)
T ss_pred ceEEEEEeecCccceee
Confidence 89999999765544333
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.046 Score=68.22 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=103.3
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
+++++.||+|.|.... +.+...++. -..++.+++++|... +...+.+++||.-| +.+..
T Consensus 86 ~asCS~DGkv~I~sl~---------------~~~~~~~~d-f~rpiksial~Pd~~----~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLF---------------TDDEITQYD-FKRPIKSIALHPDFS----RQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred EEEecCCCcEEEeecc---------------CCccceeEe-cCCcceeEEeccchh----hhhhhheeecCcce-EEEeh
Confidence 9999999999983321 222223332 246899999995322 33347899999998 77765
Q ss_pred CCC-CcEE-EEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCC------CCcEEEEEcC
Q 000673 608 LGS-GNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP------NYPAKVVWDC 679 (1358)
Q Consensus 608 l~s-g~~l-~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~------~~V~~v~~sp 679 (1358)
-.- |... ..+..-.|+|.++.|. |+++|=++.+| |++||+.+++.+..++... .....+.|.+
T Consensus 145 r~wlgnk~~v~l~~~eG~I~~i~W~--------g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~ 215 (846)
T KOG2066|consen 145 RNWLGNKDSVVLSEGEGPIHSIKWR--------GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD 215 (846)
T ss_pred hhhhcCccceeeecCccceEEEEec--------CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC
Confidence 332 1111 1345557899999997 67898888887 9999999988877665322 2345889998
Q ss_pred CCCEEEEEecCCccccCCCCeEEEEECCCC--eEEEEEeCCCCce
Q 000673 680 PRGYIACLCRDHSRTSDAVDVLFIWDVKTG--ARERVLRGTASHS 722 (1358)
Q Consensus 680 d~~~L~~g~~d~sgssD~DgtV~vWd~~tg--~~~~~l~GH~~~v 722 (1358)
+.+.++ |=+ .+|+|..++.+ ...+++.+|....
T Consensus 216 ~~~LVI-------GW~---d~v~i~~I~~~~s~~a~~~~~~~~~~ 250 (846)
T KOG2066|consen 216 EDRLVI-------GWG---DSVKICSIKKRSSSEARSFRLPSLKK 250 (846)
T ss_pred CCeEEE-------ecC---CeEEEEEEecccccccccccCCccce
Confidence 877776 333 38999998843 2234555665533
No 292
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=96.61 E-value=0.038 Score=62.18 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=91.2
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
+...+.++.|.+|. +...+-...+..-...+....|+ ||| .++|.+..-|-.|.+|.
T Consensus 64 lC~~yk~~~vqvws---------------l~Qpew~ckIdeg~agls~~~WS-----Pdg---rhiL~tseF~lriTVWS 120 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWS---------------LVQPEWYCKIDEGQAGLSSISWS-----PDG---RHILLTSEFDLRITVWS 120 (447)
T ss_pred eeeeeccceEEEEE---------------eecceeEEEeccCCCcceeeeEC-----CCc---ceEeeeecceeEEEEEE
Confidence 34446788999954 33344455666677889999998 788 36788888899999999
Q ss_pred CCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC------------------------------------CCcE
Q 000673 608 LGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE------------------------------------DFSV 651 (1358)
Q Consensus 608 l~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~------------------------------------D~tV 651 (1358)
+.+.+....- .....+..++|+|| |++.+-.++ +..+
T Consensus 121 L~t~~~~~~~-~pK~~~kg~~f~~d------g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 121 LNTQKGYLLP-HPKTNVKGYAFHPD------GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred eccceeEEec-ccccCceeEEECCC------CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence 9887764432 22334677888888 444433321 2345
Q ss_pred EEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 652 ALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 652 ~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
.+||.----.+..+. -.-.+..+.|+|.+++|++|+.| +.+||-+--|-
T Consensus 194 aVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD--------~~lrvlnh~tW 242 (447)
T KOG4497|consen 194 AVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYD--------QMLRVLNHFTW 242 (447)
T ss_pred EEecchhhheeeeee-eccceeEEEeccccceEEeeccc--------hhhhhhceeee
Confidence 556522111111111 12367889999999999986554 78887654443
No 293
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.57 E-value=1.8 Score=52.18 Aligned_cols=95 Identities=12% Similarity=-0.053 Sum_probs=64.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCC-cEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVA-PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~-~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~ 670 (1358)
..++.++.|+.+..+|..+|+.+..+....+ .+.+... . +..++.++.||.+.++|.++|+.+..++.+..
T Consensus 280 ~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~------g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 280 NRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--V------GGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--E------CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 5777788999999999999998766532212 1122111 1 57889999999999999999999988876654
Q ss_pred CcE-EEEEcCCCCEEEEEecCCccccCCCCeEEEE
Q 000673 671 YPA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1358)
Q Consensus 671 ~V~-~v~~spd~~~L~~g~~d~sgssD~DgtV~vW 704 (1358)
.+. ...+. +++ |++++ . ||.|+.+
T Consensus 352 ~~~~sp~~~-~~~-l~v~~------~--dG~l~~~ 376 (377)
T TIGR03300 352 GIASPPVVV-GDG-LLVQT------R--DGDLYAF 376 (377)
T ss_pred ccccCCEEE-CCE-EEEEe------C--CceEEEe
Confidence 332 33333 344 44333 2 3788765
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.53 E-value=0.078 Score=58.46 Aligned_cols=118 Identities=9% Similarity=-0.072 Sum_probs=85.9
Q ss_pred EEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC-c-EEE-EEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCC
Q 000673 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG-N-LIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF 649 (1358)
Q Consensus 573 V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg-~-~l~-~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~ 649 (1358)
++.++++ +|+ +++++.+....|..|.++.. + .++ ....-++.=.+..|+.. ...+|.+..||
T Consensus 161 ~ns~~~s-----nd~----~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~------~~~FAv~~Qdg 225 (344)
T KOG4532|consen 161 QNSLHYS-----NDP----SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN------DLQFAVVFQDG 225 (344)
T ss_pred eeeeEEc-----CCC----ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC------cceEEEEecCC
Confidence 6777786 777 99999999999999998643 2 233 22333445567788877 68999999999
Q ss_pred cEEEEECCCCcEEE-----EecCCCCCcEEEEEcCCCC---EEEEEecCCccccCCCCeEEEEECCCCeEEEE
Q 000673 650 SVALASLETLRVER-----MFPGHPNYPAKVVWDCPRG---YIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1358)
Q Consensus 650 tV~lwdl~~~~~~~-----~l~gH~~~V~~v~~spd~~---~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~ 714 (1358)
++.+||++...... +-+.|.+.+..+.|+|-|. ++++.+ -+.+.|-|++++.-...
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh---------fs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH---------FSRVHVVDTRNYVNHQV 289 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC---------cceEEEEEcccCceeeE
Confidence 99999999754332 2245888999999997443 444332 26899999999865443
No 295
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.30 E-value=0.011 Score=43.94 Aligned_cols=38 Identities=37% Similarity=0.573 Sum_probs=33.2
Q ss_pred eEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 561 VSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 561 ~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
++...+.+|...|+++.|+ +++ ..+++|+.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~-----~~~----~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFS-----PDG----KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEEC-----CCC----CEEEEecCCCeEEEcC
Confidence 4677888999999999997 455 7999999999999996
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.049 Score=63.73 Aligned_cols=227 Identities=16% Similarity=0.102 Sum_probs=134.4
Q ss_pred CceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCccc
Q 000673 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1358)
Q Consensus 16 ~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1358)
...|+.+..+- -+++.+++.||.++.|.-... ...+-+.-+..|-+.|.+++.
T Consensus 9 rd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~~------------------------ 61 (558)
T KOG0882|consen 9 RDVITHVFPTK-AKFIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLAV------------------------ 61 (558)
T ss_pred cceeeeEeeeh-hheEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhhc------------------------
Confidence 34477766653 488999999999999998731 112333345578888877733
Q ss_pred ccccCCCCeEEEeeC-CCeEEEEECCCCceEEEeeCCCCCCCCceeeeeCCCCCce-EEEEeeccCCccccccccccccc
Q 000673 96 GKSSLDNGALISACT-DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLPSNPRYV-CIGCCFIDTNQLSDHHSFESVEG 173 (1358)
Q Consensus 96 ~~~s~d~~~L~S~s~-Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~~~~~~~-~l~c~~~~~~~~~~~~~~~~~~g 173 (1358)
+-|+..+.|.+. |..+|+.|+.+---+.-.++. +-|..+.-.....+.. .+....
T Consensus 62 ---S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~---~lPg~a~wv~skGd~~s~IAVs~----------------- 118 (558)
T KOG0882|consen 62 ---SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV---DLPGFAEWVTSKGDKISLIAVSL----------------- 118 (558)
T ss_pred ---cccceeEeeccCcccceeEEEeeccchhhhcccc---cCCCceEEecCCCCeeeeEEeec-----------------
Confidence 667899999888 999999999876544444443 2222211111100000 111111
Q ss_pred ccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCccc
Q 000673 174 DLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHL 253 (1358)
Q Consensus 174 ~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~ 253 (1358)
...+.|.|+|.+...+-...+- .+|..||..+-.... .+.+++...+|++..|..++. .
T Consensus 119 -------------~~sg~i~VvD~~~d~~q~~~fk-klH~sPV~~i~y~qa------~Ds~vSiD~~gmVEyWs~e~~-~ 177 (558)
T KOG0882|consen 119 -------------FKSGKIFVVDGFGDFCQDGYFK-KLHFSPVKKIRYNQA------GDSAVSIDISGMVEYWSAEGP-F 177 (558)
T ss_pred -------------ccCCCcEEECCcCCcCccceec-ccccCceEEEEeecc------ccceeeccccceeEeecCCCc-c
Confidence 2456777888766543333332 247788888888754 668899999999999999851 1
Q ss_pred ccccCCcceecCCcccceEeccCcccCceEEEEecCCcEEEEEecCce--EEeecCCCccccee
Q 000673 254 DREEGNGLCKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEI 315 (1358)
Q Consensus 254 ~~~~~~~l~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~~~~ 315 (1358)
........++--.+.... ...-...-..++.|+++|..+.....+.. +++. .+|+++-++
T Consensus 178 qfPr~~l~~~~K~eTdLy-~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~-KtGklvqei 239 (558)
T KOG0882|consen 178 QFPRTNLNFELKHETDLY-GFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF-KTGKLVQEI 239 (558)
T ss_pred cCccccccccccccchhh-cccccccCccceEEccccCcccccCcccEEEEEEe-ccchhhhhh
Confidence 111111111100011110 00111122368899999999999997766 5555 666555544
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.20 E-value=0.0045 Score=76.64 Aligned_cols=126 Identities=20% Similarity=0.206 Sum_probs=96.8
Q ss_pred EEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCe
Q 000673 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1358)
Q Consensus 562 ~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~ 641 (1358)
+.++|+.|+..-+|++|+ .+. ++|+.|+-.|.|+++++.+|.......+|..+|+-+.-+.+ |..
T Consensus 1093 ~w~~frd~~~~fTc~afs-----~~~----~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d------gs~ 1157 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFS-----GGT----NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD------GST 1157 (1516)
T ss_pred cchhhhccccceeeEEee-----cCC----ceEEeeeccceEEEEEccCccccccccccccccccccccCC------cce
Confidence 456788899999999997 333 89999999999999999999999999999999999988888 665
Q ss_pred EEEEe-CCC-cEEEEECCC-CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEE
Q 000673 642 FLSVG-EDF-SVALASLET-LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1358)
Q Consensus 642 l~S~s-~D~-tV~lwdl~~-~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~ 714 (1358)
.++.+ ... -..+|++.+ +...++|.+ -.++.|+..-.+-+.|+ .+ ..+.|||++|+..+.+
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt-----~~---d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGT-----EA---DDALLYDVQTCSPLQT 1221 (1516)
T ss_pred eeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcc-----cc---cceEEEecccCcHHHH
Confidence 55443 333 578999864 455555543 34788987665555443 22 3788999999987766
No 298
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.19 E-value=0.2 Score=59.11 Aligned_cols=130 Identities=13% Similarity=0.170 Sum_probs=98.4
Q ss_pred EEEEEEcCC-cEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEE
Q 000673 527 AIVYGFFSG-EIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1358)
Q Consensus 527 ~lv~G~~dG-~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~l 605 (1358)
+++.|..|| .+-|.+ ..+++ .+.+.+.-+.|.++..+ +|| +.++.+..-+.+-+
T Consensus 373 ~~vigt~dgD~l~iyd---------------~~~~e-~kr~e~~lg~I~av~vs-----~dG----K~~vvaNdr~el~v 427 (668)
T COG4946 373 GDVIGTNDGDKLGIYD---------------KDGGE-VKRIEKDLGNIEAVKVS-----PDG----KKVVVANDRFELWV 427 (668)
T ss_pred ceEEeccCCceEEEEe---------------cCCce-EEEeeCCccceEEEEEc-----CCC----cEEEEEcCceEEEE
Confidence 589999999 566632 33444 45666778999999997 888 88999988899999
Q ss_pred EeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCC----CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCC
Q 000673 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED----FSVALASLETLRVERMFPGHPNYPAKVVWDCPR 681 (1358)
Q Consensus 606 WDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D----~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~ 681 (1358)
.|+++|+....=+..-+-|+...|+|+ ++++|-+--+ ..|+++|+.+++....-.. ...=.+-+|.||+
T Consensus 428 ididngnv~~idkS~~~lItdf~~~~n------sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d~ 500 (668)
T COG4946 428 IDIDNGNVRLIDKSEYGLITDFDWHPN------SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPDG 500 (668)
T ss_pred EEecCCCeeEecccccceeEEEEEcCC------ceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCCCC
Confidence 999999876655556678999999999 7888876444 5799999999887654322 1222456899999
Q ss_pred CEEEEEe
Q 000673 682 GYIACLC 688 (1358)
Q Consensus 682 ~~L~~g~ 688 (1358)
++|.-.+
T Consensus 501 ryLYfLs 507 (668)
T COG4946 501 RYLYFLS 507 (668)
T ss_pred cEEEEEe
Confidence 9988543
No 299
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.18 E-value=0.18 Score=59.79 Aligned_cols=103 Identities=11% Similarity=0.024 Sum_probs=79.7
Q ss_pred CcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEE-EEe---------CCCcEEEEECCCCcEEEEecCC--
Q 000673 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL-SVG---------EDFSVALASLETLRVERMFPGH-- 668 (1358)
Q Consensus 601 ~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~-S~s---------~D~tV~lwdl~~~~~~~~l~gH-- 668 (1358)
++|.+.|..+++.+..+..-..+-- + ++|| |+.+. +.+ .+..|.+||+.+++.+..++--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spD------g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASD------GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCC------CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 8999999999999988875444433 4 9999 66554 445 5889999999999999888632
Q ss_pred -----CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeC
Q 000673 669 -----PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1358)
Q Consensus 669 -----~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~G 717 (1358)
......++++|||++|++.-. +.+..|-|.|+.+++.+..+.-
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~V~n~------~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLLFYQF------SPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred chhhccCccceEEECCCCCEEEEecC------CCCCEEEEEECCCCcEEEEEeC
Confidence 223458999999999996432 2258999999999999988764
No 300
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.14 E-value=0.014 Score=43.28 Aligned_cols=39 Identities=26% Similarity=0.501 Sum_probs=35.0
Q ss_pred CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEE
Q 000673 611 GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1358)
Q Consensus 611 g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwd 655 (1358)
++++..+..|...|.++.|.|+ +..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPD------GKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCC------CCEEEEecCCCeEEEcC
Confidence 4567788899999999999998 78999999999999996
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.09 E-value=0.25 Score=54.59 Aligned_cols=144 Identities=10% Similarity=-0.078 Sum_probs=91.0
Q ss_pred EEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEE-EEecCCCCEEEEEEeccccCCCCCcc
Q 000673 512 VSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQ-YFLGHTGAVLCLAAHRMVGTAKGWSF 590 (1358)
Q Consensus 512 Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~-~l~gH~~~V~~l~~sp~~~~~dg~~~ 590 (1358)
+.++.+..+..| +++-+....|..+..+.... ..++ .+..-++.=.+..|+ ..
T Consensus 161 ~ns~~~snd~~~----~~~Vgds~~Vf~y~id~~se-------------y~~~~~~a~t~D~gF~~S~s-----~~---- 214 (344)
T KOG4532|consen 161 QNSLHYSNDPSW----GSSVGDSRRVFRYAIDDESE-------------YIENIYEAPTSDHGFYNSFS-----EN---- 214 (344)
T ss_pred eeeeEEcCCCce----EEEecCCCcceEEEeCCccc-------------eeeeeEecccCCCceeeeec-----cC----
Confidence 666676777777 77777777787765542211 1222 233344555677776 22
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEE-----ecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEe
Q 000673 591 NEVLVSGSMDCSIRIWDLGSGNLITVM-----HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF 665 (1358)
Q Consensus 591 ~~~L~Sgs~D~tI~lWDl~sg~~l~~~-----~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l 665 (1358)
+..+|.+.+||++.|||++.....+.+ ..|.|.++.+.|+|-+. -++|.-.-.-+.+.+.|+++++-.+.+
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~----lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL----LDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc----ceEEEEecCcceEEEEEcccCceeeEE
Confidence 278999999999999999865433322 35899999999998632 245555555678999999998755443
Q ss_pred c-------CCCC-CcEEEEEcCCCCEEE
Q 000673 666 P-------GHPN-YPAKVVWDCPRGYIA 685 (1358)
Q Consensus 666 ~-------gH~~-~V~~v~~spd~~~L~ 685 (1358)
. .|.. .|..-.|+.++.-+.
T Consensus 291 ~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 291 VIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred ecCccccccccccccccccccCCCcccc
Confidence 2 2222 255555555554444
No 302
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.08 E-value=0.29 Score=65.49 Aligned_cols=182 Identities=13% Similarity=0.068 Sum_probs=111.1
Q ss_pred CCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCC
Q 000673 509 EKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGW 588 (1358)
Q Consensus 509 ~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~ 588 (1358)
...|.+..+.++..- ++++..+|.|.++..+... +....+.+..+ ...|.|.+|+ ||+
T Consensus 75 ~~~ivs~~yl~d~~~----l~~~~~~Gdi~~~~~~~~~---------~~~~~E~VG~v---d~GI~a~~WS-----PD~- 132 (928)
T PF04762_consen 75 NDKIVSFQYLADSES----LCIALASGDIILVREDPDP---------DEDEIEIVGSV---DSGILAASWS-----PDE- 132 (928)
T ss_pred CCcEEEEEeccCCCc----EEEEECCceEEEEEccCCC---------CCceeEEEEEE---cCcEEEEEEC-----CCc-
Confidence 467788777777665 9999999999997655311 11222233333 5689999998 788
Q ss_pred ccCcEEEEEeCCCcEEEEeCC-----------------------CCcEEEEEec------------------------CC
Q 000673 589 SFNEVLVSGSMDCSIRIWDLG-----------------------SGNLITVMHH------------------------HV 621 (1358)
Q Consensus 589 ~~~~~L~Sgs~D~tI~lWDl~-----------------------sg~~l~~~~~------------------------H~ 621 (1358)
.+|+-...++++.+-+-. -|+.-..|+| +.
T Consensus 133 ---Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~d 209 (928)
T PF04762_consen 133 ---ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWD 209 (928)
T ss_pred ---CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccC
Confidence 888888888888776432 0111222322 11
Q ss_pred CcEEEEEeCCCCCCCCCCCeEEEEeC----C--CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCcccc
Q 000673 622 APVRQIILSPPQTEHPWSDCFLSVGE----D--FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTS 695 (1358)
Q Consensus 622 ~~V~~l~~spd~~~~~~g~~l~S~s~----D--~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgss 695 (1358)
+.-..|.|-.| |++||..+. + +.+|+|+-+ |....+-..-.+--..++|.|.|++|++...- .
T Consensus 210 d~~~~ISWRGD------G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~----~ 278 (928)
T PF04762_consen 210 DGRVRISWRGD------GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL----P 278 (928)
T ss_pred CCceEEEECCC------CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc----C
Confidence 23346677777 899988764 2 689999955 66544433222223588999999999965531 1
Q ss_pred CCCCeEEEEECCCCeEEEEEe----CCCCceEEEeee
Q 000673 696 DAVDVLFIWDVKTGARERVLR----GTASHSMFDHFC 728 (1358)
Q Consensus 696 D~DgtV~vWd~~tg~~~~~l~----GH~~~v~~~~~~ 728 (1358)
+ ...|-.|.- +|..-..|. .....+..+.|.
T Consensus 279 ~-~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn 313 (928)
T PF04762_consen 279 D-RHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWN 313 (928)
T ss_pred C-CcEEEEEec-CCcEeeeEecCCCCCCceeeEEEEC
Confidence 2 256667763 454433332 233445444443
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.021 Score=65.90 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=75.8
Q ss_pred EEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC
Q 000673 603 IRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682 (1358)
Q Consensus 603 I~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~ 682 (1358)
|++.+..+.+...-+.+|...|..++|+|.+ ..++..++.+++|+|.|+++..++.++..| ..+++++|.-|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~-----~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFN-----EGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccc-----cceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc
Confidence 6666666666666677888999999999983 237889999999999999999999999988 6899999988766
Q ss_pred EEEEEecCCccccCCCCeEEEEECCCC
Q 000673 683 YIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 683 ~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
..+- .++..|.|+|+|++.-
T Consensus 249 h~IY-------aGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 249 HVIY-------AGLQNGMVLVYDMRQP 268 (463)
T ss_pred ceeE-------EeccCceEEEEEccCC
Confidence 5552 2334599999999864
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=1 Score=57.17 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=86.1
Q ss_pred CCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCC----CCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEE
Q 000673 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG----SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1358)
Q Consensus 570 ~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~----sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~ 645 (1358)
..++.++++| .+- +.+|.|-.||.|..+.=+ .|....-...-.++|+.+++..+ +..++-+
T Consensus 125 ~~p~s~l~Vs-----~~l----~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d------~~s~lFv 189 (933)
T KOG2114|consen 125 PSPASSLAVS-----EDL----KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD------GKSVLFV 189 (933)
T ss_pred CCcceEEEEE-----ccc----cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC------CceeEEE
Confidence 3458888887 333 899999999999988422 12211122233579999999888 5553444
Q ss_pred eCCCcEEEEECCCCcE-EEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe-CCCCce
Q 000673 646 GEDFSVALASLETLRV-ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR-GTASHS 722 (1358)
Q Consensus 646 s~D~tV~lwdl~~~~~-~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~-GH~~~v 722 (1358)
..-..|.+|.+....+ ...+..|...+.|..+++....++|++. .-+++||......--.+. ||.-..
T Consensus 190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~---------e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS---------EFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC---------ceEEEEcCCCcceeeeecCCCeEEE
Confidence 4456799999984442 4557778778899999887665665331 589999987544444555 877443
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.74 E-value=0.29 Score=54.61 Aligned_cols=112 Identities=13% Similarity=-0.028 Sum_probs=76.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEe-cCCC-
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMF-PGHP- 669 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l-~gH~- 669 (1358)
..++.++.++.+..||..+|+.+.++... +++...... + +..++.++.|+.+..+|.++|+.+... ....
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~-~------~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVV-D------GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEE-E------TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeee-c------ccccccccceeeeEecccCCcceeeeecccccc
Confidence 67888899999999999999998887752 221111111 1 466777778899999999999998774 3221
Q ss_pred --CCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCC
Q 000673 670 --NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTA 719 (1358)
Q Consensus 670 --~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~ 719 (1358)
..........+++.+++++. ++.|+.+|+++|+.+.....+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~--------~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTS--------SGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEET--------CSEEEEEETTTTEEEEEEESST
T ss_pred ccccccccCceEecCEEEEEec--------cCcEEEEecCCCcEEEEeecCC
Confidence 11122222223677775432 3899999999999998887754
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.73 E-value=1.5 Score=49.59 Aligned_cols=133 Identities=18% Similarity=0.165 Sum_probs=87.3
Q ss_pred CCCCEEEEEEeccccCCCCCccCcEEEEEeCC--------CcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCC
Q 000673 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--------CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1358)
Q Consensus 569 H~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D--------~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~ 640 (1358)
.....+.+++. ++| ++.++.... +.|..++.. ++..... ..-...+.|+|+|+ ++
T Consensus 84 ~~~~~ND~~vd-----~~G----~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~d------g~ 146 (246)
T PF08450_consen 84 PFNRPNDVAVD-----PDG----NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPD------GK 146 (246)
T ss_dssp CTEEEEEEEE------TTS-----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETT------SS
T ss_pred ccCCCceEEEc-----CCC----CEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCc------ch
Confidence 34678889997 788 777776654 456677766 5543333 33566789999999 76
Q ss_pred eE-EEEeCCCcEEEEECCCC-c------EEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEE
Q 000673 641 CF-LSVGEDFSVALASLETL-R------VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1358)
Q Consensus 641 ~l-~S~s~D~tV~lwdl~~~-~------~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~ 712 (1358)
.+ ++-+..+.|..+++... . ....+..-.+.+-.+++..+|++.++.. + .+.|.++|.+ |+++
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-------~-~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-------G-GGRIVVFDPD-GKLL 217 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-------T-TTEEEEEETT-SCEE
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-------C-CCEEEEECCC-ccEE
Confidence 55 56778888999998532 1 2223333333477999999998766322 1 2799999987 9998
Q ss_pred EEEeCCCCceEEEee
Q 000673 713 RVLRGTASHSMFDHF 727 (1358)
Q Consensus 713 ~~l~GH~~~v~~~~~ 727 (1358)
..+.-....++.+.|
T Consensus 218 ~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 218 REIELPVPRPTNCAF 232 (246)
T ss_dssp EEEE-SSSSEEEEEE
T ss_pred EEEcCCCCCEEEEEE
Confidence 888755456665545
No 307
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.71 E-value=0.55 Score=45.93 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=65.5
Q ss_pred EEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEE
Q 000673 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVA 652 (1358)
Q Consensus 573 V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~ 652 (1358)
|+++++.. -|| ...+.|+.||.|+.||+|+ ..+.+..+..+ +.|+++.-... ..|+-+-.+|+|.
T Consensus 2 V~al~~~d----~d~-dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~~-------~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFD----FDG-DGENELLVGSDDFEIRVFK--GDEIVAEITET-DKVTSLCSLGG-------GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEe----cCC-CCcceEEEecCCcEEEEEe--CCcEEEEEecc-cceEEEEEcCC-------CEEEEEecCCEEE
Confidence 67787763 222 1247899999999999997 45677777654 66777776654 6799999999999
Q ss_pred EEECCCCcEEEEecCCCCCcEEEEEcCCC----CEEEEEec
Q 000673 653 LASLETLRVERMFPGHPNYPAKVVWDCPR----GYIACLCR 689 (1358)
Q Consensus 653 lwdl~~~~~~~~l~gH~~~V~~v~~spd~----~~L~~g~~ 689 (1358)
+|+-. .+..+.-..| .+.++.+..-. .-|++|..
T Consensus 67 vY~~~-~RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~Gws 104 (111)
T PF14783_consen 67 VYDRS-QRLWRIKSKN--QVTSMAFYDINGDGVPELIVGWS 104 (111)
T ss_pred EEeCc-ceeeeeccCC--CeEEEEEEcCCCCCceEEEEEec
Confidence 99753 2332222223 46666664432 25676554
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.64 E-value=0.022 Score=63.47 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=89.3
Q ss_pred ecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcE---EEEEecC-----CCcEEEEEeCCCCCCCCC
Q 000673 567 LGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL---ITVMHHH-----VAPVRQIILSPPQTEHPW 638 (1358)
Q Consensus 567 ~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~---l~~~~~H-----~~~V~~l~~spd~~~~~~ 638 (1358)
..|...|+++.|. .|. +.++|+ .|-.|.+|++.-... +.-++.| +..|++..|+|..
T Consensus 169 NaH~yhiNSiS~N-----sD~----et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~----- 233 (460)
T COG5170 169 NAHPYHINSISFN-----SDK----ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM----- 233 (460)
T ss_pred ccceeEeeeeeec-----Cch----heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH-----
Confidence 5788999999996 444 677765 688999999864321 2223333 3468899999985
Q ss_pred CCeEEEEeCCCcEEEEECCCCc-----E-E--EE--------ecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEE
Q 000673 639 SDCFLSVGEDFSVALASLETLR-----V-E--RM--------FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLF 702 (1358)
Q Consensus 639 g~~l~S~s~D~tV~lwdl~~~~-----~-~--~~--------l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~ 702 (1358)
...+.-.+..|.|++-|++... + + .. |.+-...|..+.|+++|+|+++ -|- -+|+
T Consensus 234 cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls--------Rdy-ltvk 304 (460)
T COG5170 234 CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS--------RDY-LTVK 304 (460)
T ss_pred cceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE--------ecc-ceEE
Confidence 3667777888999999998321 1 0 01 1122346789999999999983 221 6999
Q ss_pred EEECCC-CeEEEEEeCCC
Q 000673 703 IWDVKT-GARERVLRGTA 719 (1358)
Q Consensus 703 vWd~~t-g~~~~~l~GH~ 719 (1358)
|||.+. ..++.++.-|.
T Consensus 305 iwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 305 IWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred EEecccccCCceeechHH
Confidence 999986 46777775553
No 309
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.46 E-value=0.79 Score=56.25 Aligned_cols=133 Identities=11% Similarity=0.135 Sum_probs=81.3
Q ss_pred cCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCC--CcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCC
Q 000673 557 VNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD--CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQT 634 (1358)
Q Consensus 557 ~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D--~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~ 634 (1358)
+.+++.... ....+.+....|+ ||| +.++++.+.+ ..|.++|+.+++ ...+..+.+......|+||
T Consensus 220 l~tg~~~~l-t~~~g~~~~~~~S-----PDG---~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPD-- 287 (419)
T PRK04043 220 LYTGKKEKI-ASSQGMLVVSDVS-----KDG---SKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVED-- 287 (419)
T ss_pred CCCCcEEEE-ecCCCcEEeeEEC-----CCC---CEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCC--
Confidence 445544333 3345666777887 788 2455555545 457777887776 3445544443445679999
Q ss_pred CCCCCCeEEEEeC-CC--cEEEEECCCCcEEEEec-CCCCCcEEEEEcCCCCEEEEEecCCccccC---CCCeEEEEECC
Q 000673 635 EHPWSDCFLSVGE-DF--SVALASLETLRVERMFP-GHPNYPAKVVWDCPRGYIACLCRDHSRTSD---AVDVLFIWDVK 707 (1358)
Q Consensus 635 ~~~~g~~l~S~s~-D~--tV~lwdl~~~~~~~~l~-gH~~~V~~v~~spd~~~L~~g~~d~sgssD---~DgtV~vWd~~ 707 (1358)
|+.++-.+. .+ .|.+.|+.+++..+... +. . ...|+|||++|+..+.. ...+ ....|++.|++
T Consensus 288 ----G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SPDG~~Ia~~~~~--~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 288 ----DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVSTYKNYIVYSSRE--TNNEFGKNTFNLYLISTN 357 (419)
T ss_pred ----CCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECCCCCEEEEEEcC--CCcccCCCCcEEEEEECC
Confidence 776655543 23 68888998887754332 22 1 24899999999865532 0000 01478888998
Q ss_pred CCeE
Q 000673 708 TGAR 711 (1358)
Q Consensus 708 tg~~ 711 (1358)
+|+.
T Consensus 358 ~g~~ 361 (419)
T PRK04043 358 SDYI 361 (419)
T ss_pred CCCe
Confidence 8764
No 310
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.44 E-value=0.52 Score=57.81 Aligned_cols=122 Identities=11% Similarity=0.084 Sum_probs=79.8
Q ss_pred CEEEEEEeccccCCCCCccCc-EEEEEeC---CCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEE-EEe
Q 000673 572 AVLCLAAHRMVGTAKGWSFNE-VLVSGSM---DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFL-SVG 646 (1358)
Q Consensus 572 ~V~~l~~sp~~~~~dg~~~~~-~L~Sgs~---D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~-S~s 646 (1358)
.+..-.|+ ||| + .++..+. +..|.++|+.+|+..... ...+.+....|+|| |+.++ +.+
T Consensus 189 ~~~~p~wS-----pDG----~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPD------G~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWA-----NKE----QTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKD------GSKLLLTMA 252 (419)
T ss_pred CeEeEEEC-----CCC----CcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCC------CCEEEEEEc
Confidence 67778887 788 5 3554333 356889999888764433 35566777889999 66544 444
Q ss_pred CC--CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEE
Q 000673 647 ED--FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1358)
Q Consensus 647 ~D--~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l 715 (1358)
.+ ..|.++|+.+++..+ +..+........|+|||+.|+..+.. .+...|++.|+.+|+..+..
T Consensus 253 ~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr-----~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDR-----LGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred cCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECC-----CCCceEEEEECCCCCeEeCc
Confidence 33 567888988877543 44343333456899999988854321 11137999999988875543
No 311
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.34 E-value=0.1 Score=62.59 Aligned_cols=111 Identities=20% Similarity=0.231 Sum_probs=84.0
Q ss_pred EEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC------
Q 000673 574 LCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE------ 647 (1358)
Q Consensus 574 ~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~------ 647 (1358)
+-+.|+ |.| .+|+|=-.-| |.+|-=.+-..+++| .|. .|.-+.|||. .++|+|=+.
T Consensus 214 tyv~wS-----P~G----TYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~------EkYLVT~s~~p~~~~ 275 (698)
T KOG2314|consen 214 TYVRWS-----PKG----TYLVTFHKQG-IALWGGESFDRIQRF-YHP-GVQFIDFSPN------EKYLVTYSPEPIIVE 275 (698)
T ss_pred eeEEec-----CCc----eEEEEEeccc-eeeecCccHHHHHhc-cCC-CceeeecCCc------cceEEEecCCccccC
Confidence 557798 778 8999877655 789987777777777 454 4899999999 788988542
Q ss_pred -----CCcEEEEECCCCcEEEEecCC--CCCcE-EEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeE
Q 000673 648 -----DFSVALASLETLRVERMFPGH--PNYPA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGAR 711 (1358)
Q Consensus 648 -----D~tV~lwdl~~~~~~~~l~gH--~~~V~-~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~ 711 (1358)
-..++|||+++|...+.|+.- ...++ -+.||.|++|++.... ++|.|++..+-.+
T Consensus 276 ~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~---------~sisIyEtpsf~l 338 (698)
T KOG2314|consen 276 EDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG---------NSISIYETPSFML 338 (698)
T ss_pred cccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc---------ceEEEEecCceee
Confidence 267999999999998888762 22233 6799999999996432 4899998876433
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.33 E-value=1.9 Score=47.96 Aligned_cols=102 Identities=18% Similarity=0.093 Sum_probs=69.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCc----------E-EEEEeCCCCCCCCCCCeEEEEeCCCc-EEEEECCCC
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP----------V-RQIILSPPQTEHPWSDCFLSVGEDFS-VALASLETL 659 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~----------V-~~l~~spd~~~~~~g~~l~S~s~D~t-V~lwdl~~~ 659 (1358)
..++.+..++.|..+|+.+|+.+..+...... + ..+.+. + + .+..++.++. +.+ |++++
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~-~v~~~~~~g~~~~~-d~~tg 193 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-D------G-RVYVSSGDGRVVAV-DLATG 193 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-T------T-EEEEECCTSSEEEE-ETTTT
T ss_pred CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-C------C-EEEEEcCCCeEEEE-ECCCC
Confidence 77888888999999999999999888775432 1 222222 3 4 6666666775 666 99999
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEE
Q 000673 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1358)
Q Consensus 660 ~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~ 713 (1358)
+.+.... ...+..+ ..+++..|++++ .|+.|+.||++||+.+-
T Consensus 194 ~~~w~~~--~~~~~~~-~~~~~~~l~~~~--------~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 194 EKLWSKP--ISGIYSL-PSVDGGTLYVTS--------SDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEEEEC--SS-ECEC-EECCCTEEEEEE--------TTTEEEEEETTTTEEEE
T ss_pred CEEEEec--CCCccCC-ceeeCCEEEEEe--------CCCEEEEEECCCCCEEe
Confidence 9764433 2222221 346778887543 24899999999998764
No 313
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.25 E-value=10 Score=46.28 Aligned_cols=104 Identities=13% Similarity=0.251 Sum_probs=66.8
Q ss_pred CCCEEEEEEeccccCCCCCccCcEEEEEe-CCCcEEEEeCCC-C---cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEE
Q 000673 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGS-G---NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1358)
Q Consensus 570 ~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs-~D~tI~lWDl~s-g---~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S 644 (1358)
+..|...+|- |.| ++--+++|- .-.++.+|-+++ + +++..|.. ...+.+.|+|. |++++.
T Consensus 445 ke~vi~FaWE-----P~g--dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk------G~fvvv 509 (698)
T KOG2314|consen 445 KESVIAFAWE-----PHG--DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK------GRFVVV 509 (698)
T ss_pred chheeeeeec-----cCC--CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC------CcEEEE
Confidence 4667778887 566 112233333 234788888763 1 23333332 45678999999 887776
Q ss_pred E---eCCCcEEEEECCCCcEEEEe-cCCCCCcEEEEEcCCCCEEEEEec
Q 000673 645 V---GEDFSVALASLETLRVERMF-PGHPNYPAKVVWDCPRGYIACLCR 689 (1358)
Q Consensus 645 ~---s~D~tV~lwdl~~~~~~~~l-~gH~~~V~~v~~spd~~~L~~g~~ 689 (1358)
+ |..|.+..+|+.-..+..+- +-|. ..+.+.|.|.|+|+++++.
T Consensus 510 a~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred EEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeee
Confidence 5 45788999998854443332 2343 5678999999999996543
No 314
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.18 E-value=3.9 Score=46.23 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=38.1
Q ss_pred CCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCC
Q 000673 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVA 622 (1358)
Q Consensus 569 H~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~ 622 (1358)
-.+.|..+..+ ||| +.||+...+|.|.+|++.+-++.+.+..+..
T Consensus 228 ~~d~i~kmSlS-----Pdg----~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 228 EQDGIFKMSLS-----PDG----SLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred CCCceEEEEEC-----CCC----CEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 35678888887 899 9999999999999999999888887765543
No 315
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.98 E-value=0.0099 Score=72.04 Aligned_cols=187 Identities=18% Similarity=0.206 Sum_probs=116.2
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEe----CCCcE
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS----MDCSI 603 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs----~D~tI 603 (1358)
++.|..+|.|-+..+..... + ...+..+|....++++|++ -|. ++||.|- .|..+
T Consensus 73 lavG~atG~I~l~s~r~~hd-----------S--s~E~tp~~ar~Ct~lAwne----LDt----n~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPHD-----------S--SAEVTPGYARPCTSLAWNE----LDT----NHLAAGLDKHRNDSSL 131 (783)
T ss_pred hhhccccCceEEeecCCccc-----------c--cceeccccccccccccccc----ccH----HHHHhhhhhhcccCCc
Confidence 78899999999866532211 1 1234567889999999985 344 6777763 46789
Q ss_pred EEEeCCCC--cEE--EEEec-CCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCC-cEEEEecCCCCCcEEEEE
Q 000673 604 RIWDLGSG--NLI--TVMHH-HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETL-RVERMFPGHPNYPAKVVW 677 (1358)
Q Consensus 604 ~lWDl~sg--~~l--~~~~~-H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~-~~~~~l~gH~~~V~~v~~ 677 (1358)
.|||+.++ .+. ..|.+ ....+.+++|-.+ .+.+.+|...+.++++|++-. .....+ .+..+..+..
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd------~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tV 203 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD------TKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITV 203 (783)
T ss_pred cceecccccCCCccccccccccccCccccccccC------cchhhcccccchhhhhhhhhhhhhhhhh--hhhhccccee
Confidence 99999876 222 22333 3445667777766 678999999999999999832 112222 1234566777
Q ss_pred cC-CCCEEEEEecCCccccCCCCeEEEEE-CCC-CeEEEEEeCCC----CceEEEeeecccccceeecceecCcccccCC
Q 000673 678 DC-PRGYIACLCRDHSRTSDAVDVLFIWD-VKT-GARERVLRGTA----SHSMFDHFCKGISMNSISGSVLNGNTSVSSL 750 (1358)
Q Consensus 678 sp-d~~~L~~g~~d~sgssD~DgtV~vWd-~~t-g~~~~~l~GH~----~~v~~~~~~~~~~~~~~sGs~l~g~~~~s~~ 750 (1358)
+| ..+|++ ... |+.|.+|| .+. ...++.+.... .++..+.+|+.. ++.
T Consensus 204 dp~~~nY~c-------s~~--dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr----------------tgl 258 (783)
T KOG1008|consen 204 DPFSPNYFC-------SNS--DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR----------------TGL 258 (783)
T ss_pred cCCCCCcee-------ccc--cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC----------------cch
Confidence 88 778887 233 58999999 333 22233322222 236677788532 222
Q ss_pred ccccccC-CcEEEEeCCCc
Q 000673 751 LLPIHED-GTFRQSQIQND 768 (1358)
Q Consensus 751 l~~~~~D-~tvr~W~~~~~ 768 (1358)
+..+.+| +++|+.++...
T Consensus 259 la~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDICVV 277 (783)
T ss_pred hhhhccCcceEEEeccccc
Confidence 3333344 68888876533
No 316
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=94.84 E-value=23 Score=48.01 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=66.5
Q ss_pred EEEEeCCC---CCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcc
Q 000673 6 VACIWSGT---PPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGK 82 (1358)
Q Consensus 6 ~~~lw~~~---~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~ 82 (1358)
+.+=|... .+..+|.++.+.+|...|+.+.++|.|.+..... +..........-=...|.+.++
T Consensus 62 ~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~--~~~~~~~E~VG~vd~GI~a~~W----------- 128 (928)
T PF04762_consen 62 VLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVREDP--DPDEDEIEIVGSVDSGILAASW----------- 128 (928)
T ss_pred EEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccC--CCCCceeEEEEEEcCcEEEEEE-----------
Confidence 34446544 5668899999999999999999999999993321 1111222222233577888854
Q ss_pred cccccccccCcccccccCCCCeEEEeeCCCeEEEEECCCCceEEEeeC
Q 000673 83 AEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSGHCRRRRKL 130 (1358)
Q Consensus 83 ~~~~~~~~~~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l 130 (1358)
|||+..|+-+..+|+|-+-+. +..-+....+
T Consensus 129 ----------------SPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l 159 (928)
T PF04762_consen 129 ----------------SPDEELLALVTGEGNLLLMTR-DFDPISEVPL 159 (928)
T ss_pred ----------------CCCcCEEEEEeCCCEEEEEec-cceEEEEeec
Confidence 899999999999999999865 4554544444
No 317
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.76 E-value=2.9 Score=47.24 Aligned_cols=87 Identities=21% Similarity=0.121 Sum_probs=54.0
Q ss_pred CCCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeC-cCcCEEEeeeccccccccCcccccccccc
Q 000673 12 GTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCG-HSAPIADLSICYPAMVSRDGKAEHWKAEN 90 (1358)
Q Consensus 12 ~~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~G-H~~~Vt~l~~~~~~~~~~~~~~~~~~~~~ 90 (1358)
++.|.-.=..+++|||+.+||-+...|+|.++|+....--.+.|.....| -+.+|..+.|...- .
T Consensus 39 pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~----~---------- 104 (282)
T PF15492_consen 39 PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYK----K---------- 104 (282)
T ss_pred CCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccc----c----------
Confidence 44444455678999999999999999999999998310001222222222 23567777775540 0
Q ss_pred cCcccccccCC-CCeEEEeeCCCeEEEEECC
Q 000673 91 SSNVMGKSSLD-NGALISACTDGVLCVWSRS 120 (1358)
Q Consensus 91 ~~~~~~~~s~d-~~~L~S~s~Dg~l~lWdl~ 120 (1358)
+++ ..-|+.-..+|.|+=.-+.
T Consensus 105 --------s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 105 --------SAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred --------ccccceeEEEEeccceeeeEEEE
Confidence 122 3356677778888876654
No 318
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=94.36 E-value=13 Score=43.30 Aligned_cols=123 Identities=11% Similarity=0.200 Sum_probs=81.3
Q ss_pred CCEEEEEEeccccCCCCCccCcEE-EEEeCCCcEEEEeCCCC-cEEEEEecC---------CCcEEEEEeCCCCCCCCCC
Q 000673 571 GAVLCLAAHRMVGTAKGWSFNEVL-VSGSMDCSIRIWDLGSG-NLITVMHHH---------VAPVRQIILSPPQTEHPWS 639 (1358)
Q Consensus 571 ~~V~~l~~sp~~~~~dg~~~~~~L-~Sgs~D~tI~lWDl~sg-~~l~~~~~H---------~~~V~~l~~spd~~~~~~g 639 (1358)
..-.-+.|| |++ ++. +.+=.+++|.+|..+.. ..+..++.+ ....-.|.++|| |
T Consensus 191 ~GPRHi~FH-----pn~----k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d------G 255 (346)
T COG2706 191 AGPRHIVFH-----PNG----KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD------G 255 (346)
T ss_pred CCcceEEEc-----CCC----cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC------C
Confidence 344678898 777 543 34557899999999863 222222221 245678889999 8
Q ss_pred CeEEEEeC-CCcEEEEECCC--CcE--EEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC--CCCeEE
Q 000673 640 DCFLSVGE-DFSVALASLET--LRV--ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV--KTGARE 712 (1358)
Q Consensus 640 ~~l~S~s~-D~tV~lwdl~~--~~~--~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~--~tg~~~ 712 (1358)
++|..+.+ ..+|.++.+.. ++. +...+.+...+....|+|++++|+++..+ +..|.|+.+ +||++-
T Consensus 256 rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~-------sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 256 RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK-------SDNITVFERDKETGRLT 328 (346)
T ss_pred CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC-------CCcEEEEEEcCCCceEE
Confidence 88776644 44788887654 332 23334555668999999999999987665 246888755 567765
Q ss_pred EEE
Q 000673 713 RVL 715 (1358)
Q Consensus 713 ~~l 715 (1358)
...
T Consensus 329 ~~~ 331 (346)
T COG2706 329 LLG 331 (346)
T ss_pred ecc
Confidence 443
No 319
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.17 Score=62.00 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=66.2
Q ss_pred CcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcE-EEEEcCCCCEEEEEecCCccccCCCCe
Q 000673 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPA-KVVWDCPRGYIACLCRDHSRTSDAVDV 700 (1358)
Q Consensus 622 ~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~-~v~~spd~~~L~~g~~d~sgssD~Dgt 700 (1358)
-.|..+.|+|. -..+|.+..+|.|.+.-+. .+-+.+++-|...++ +++|.|||++|++|-.| |+
T Consensus 21 ~~i~~~ewnP~------~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd--------G~ 85 (665)
T KOG4640|consen 21 INIKRIEWNPK------MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD--------GT 85 (665)
T ss_pred cceEEEEEcCc------cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecC--------Ce
Confidence 35778899998 6899999999999999888 777788887766777 99999999999986543 99
Q ss_pred EEEEECCCCeEEEE
Q 000673 701 LFIWDVKTGARERV 714 (1358)
Q Consensus 701 V~vWd~~tg~~~~~ 714 (1358)
|++-|+++|..+..
T Consensus 86 I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVS 99 (665)
T ss_pred EEEEEccCCCceec
Confidence 99999999877654
No 320
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.1 Score=60.45 Aligned_cols=85 Identities=14% Similarity=0.083 Sum_probs=73.1
Q ss_pred EEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCe
Q 000673 562 SRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDC 641 (1358)
Q Consensus 562 ~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~ 641 (1358)
..+.+.+|...|..++|+| .. .-++..++.+.+|+|.|+++..+...+..| ..+++++|.-++ .++
T Consensus 185 ssq~lp~~g~~IrdlafSp-----~~---~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-----~h~ 250 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSP-----FN---EGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-----RHV 250 (463)
T ss_pred hhhcccccchhhhhhccCc-----cc---cceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-----cce
Confidence 4557788999999999985 22 248999999999999999999999999888 889999999884 478
Q ss_pred EEEEeCCCcEEEEECCCCc
Q 000673 642 FLSVGEDFSVALASLETLR 660 (1358)
Q Consensus 642 l~S~s~D~tV~lwdl~~~~ 660 (1358)
+..|-..|.|.+||++..+
T Consensus 251 IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eEEeccCceEEEEEccCCC
Confidence 9999999999999998653
No 321
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.87 E-value=5.3 Score=46.29 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=53.8
Q ss_pred EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEe-----CCCcEEEEeCC-CCcEEEEEecCCCcEEEEEeCCCCCCCC
Q 000673 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGS-----MDCSIRIWDLG-SGNLITVMHHHVAPVRQIILSPPQTEHP 637 (1358)
Q Consensus 564 ~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs-----~D~tI~lWDl~-sg~~l~~~~~H~~~V~~l~~spd~~~~~ 637 (1358)
+.|.||. .|+ +|| ++|.+.= ..|.|-|||.. +-+.+..|..|.-.-..+.+.||
T Consensus 50 RHFyGHg------~fs-----~dG----~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pD----- 109 (305)
T PF07433_consen 50 RHFYGHG------VFS-----PDG----RLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPD----- 109 (305)
T ss_pred CEEecCE------EEc-----CCC----CEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCC-----
Confidence 4567773 366 888 8777754 34679999998 66777888888766777888888
Q ss_pred CCCeEEEE------------------eCCCcEEEEECCCCcEEE
Q 000673 638 WSDCFLSV------------------GEDFSVALASLETLRVER 663 (1358)
Q Consensus 638 ~g~~l~S~------------------s~D~tV~lwdl~~~~~~~ 663 (1358)
|+.|+.+ ..+.++.+.|.++|+.+.
T Consensus 110 -G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 110 -GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred -CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 5444443 234556666666665443
No 322
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.34 Score=59.43 Aligned_cols=92 Identities=13% Similarity=0.046 Sum_probs=72.8
Q ss_pred CCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEE-EEEeCCCCCCCCCCCeEEEEeCCC
Q 000673 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVR-QIILSPPQTEHPWSDCFLSVGEDF 649 (1358)
Q Consensus 571 ~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~-~l~~spd~~~~~~g~~l~S~s~D~ 649 (1358)
-.|.-+.|+| .- .++|.+..+|.|.+..+. .+.+.++.-|...|+ +++|.|| |+.++.|-.||
T Consensus 21 ~~i~~~ewnP-----~~----dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~D------GkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNP-----KM----DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPD------GKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcC-----cc----chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCC------CCEEEEEecCC
Confidence 3466677884 33 799999999999999887 778888887888888 9999999 99999999999
Q ss_pred cEEEEECCCCcEEEEecC-CCCCcEEEEEc
Q 000673 650 SVALASLETLRVERMFPG-HPNYPAKVVWD 678 (1358)
Q Consensus 650 tV~lwdl~~~~~~~~l~g-H~~~V~~v~~s 678 (1358)
+|++.|.+++..+..+.- -...|.++.|.
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeecc
Confidence 999999999887766321 12244555554
No 323
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=92.93 E-value=23 Score=41.43 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=60.1
Q ss_pred cCceEEEEecCCcEEEEEecCce---EEeecCCCcccceeeeeecceeeecCCCCCceEEEEeecccchhcccccccccc
Q 000673 279 EGGHLVSVATCGNIIALVLKDHC---IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVVAEKIENTMGVCT 355 (1358)
Q Consensus 279 ~~v~~vs~s~dg~~~~~~~~~~~---i~d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d~~~~~~~~~~~~ 355 (1358)
.+.+-|.|.|+++...++..-.+ +|..-.. .+++..+..+.+....-.+..+.+..-+ +.|+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~---~g~~~~lQ~i~tlP~dF~g~~~~aaIhi-s~dG----------- 255 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA---VGKFEELQTIDTLPEDFTGTNWAAAIHI-SPDG----------- 255 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC---CceEEEeeeeccCccccCCCCceeEEEE-CCCC-----------
Confidence 55689999999999888877655 6666222 4555444444444444444555555555 4442
Q ss_pred ccceEEEEEecCCc--EEEEEEccCCccccCCCccccCCccCCCCCceeEeEeeccceEEEee
Q 000673 356 TFYENFAVWDNRGS--AIVYAISYMNEKFDYEPHFEIPAVSYPSGVKFSIHFIQMSLYLLRME 416 (1358)
Q Consensus 356 ~~~~~v~vws~dG~--~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~L~~v~ 416 (1358)
+++-.+.+|. +.+|.+......... +...+.-.. .-..+-|.+.+++|+...
T Consensus 256 ----rFLYasNRg~dsI~~f~V~~~~g~L~~--~~~~~teg~---~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 256 ----RFLYASNRGHDSIAVFSVDPDGGKLEL--VGITPTEGQ---FPRDFNINPSGRFLIAAN 309 (346)
T ss_pred ----CEEEEecCCCCeEEEEEEcCCCCEEEE--EEEeccCCc---CCccceeCCCCCEEEEEc
Confidence 5666665553 444454431111111 001111111 112466777778887765
No 324
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.85 E-value=0.41 Score=39.48 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=34.9
Q ss_pred EeCCCCCCceeEEEEEecCCCEEEEEeCCCcEEEEEcc
Q 000673 9 IWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFS 46 (1358)
Q Consensus 9 lw~~~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~ 46 (1358)
+++++.-..+|++++++|...+||.|..||.|.++.++
T Consensus 4 ~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 4 QLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred eecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 56777778889999999999999999999999999996
No 325
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.80 E-value=0.35 Score=62.56 Aligned_cols=74 Identities=22% Similarity=0.374 Sum_probs=60.9
Q ss_pred CceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCccc
Q 000673 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVM 95 (1358)
Q Consensus 16 ~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1358)
..+|++++|+.||+++..|-.+|-|.+||... .++.+++..|.+|++.+=+...
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-----~k~l~~i~e~~ap~t~vi~v~~--------------------- 183 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-----AKILKVITEHGAPVTGVIFVGR--------------------- 183 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccC-----CcceeeeeecCCccceEEEEEE---------------------
Confidence 46799999999999999999999999999996 5788899999999999855433
Q ss_pred ccccCCCCeEEEeeCCCeEEEEECC
Q 000673 96 GKSSLDNGALISACTDGVLCVWSRS 120 (1358)
Q Consensus 96 ~~~s~d~~~L~S~s~Dg~l~lWdl~ 120 (1358)
..++..++++..-|. +|.+.
T Consensus 184 ---t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 184 ---TSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ---eCCCcEEEEccCCCc--eEEEE
Confidence 445557888877776 77664
No 326
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.69 E-value=0.37 Score=52.64 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=62.3
Q ss_pred EEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000673 527 AIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1358)
Q Consensus 527 ~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lW 606 (1358)
.+++|..+|.|+++.|+..+.. ...+..-...|-|.. |.+ ....+..+++.|+.||.|
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~--------------~d~~~s~~e~i~~~I-------p~~-~~~~~~c~~~~dg~ir~~ 129 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAH--------------SDRVCSGEESIDLGI-------PNG-RDSSLGCVGAQDGRIRAC 129 (238)
T ss_pred eEEeecccceEEEecCCccchH--------------HHhhhcccccceecc-------ccc-cccceeEEeccCCceeee
Confidence 3899999999999877633221 011111123333332 222 122689999999999999
Q ss_pred eCCCCcEEEEEecCC-CcEEEEEeCCCCCCCCCCCeEEEE--eCCCcEEEEECC
Q 000673 607 DLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCFLSV--GEDFSVALASLE 657 (1358)
Q Consensus 607 Dl~sg~~l~~~~~H~-~~V~~l~~spd~~~~~~g~~l~S~--s~D~tV~lwdl~ 657 (1358)
++..++.+...-.|. .++..+..+-. ++.++.. |.|..++.|+++
T Consensus 130 n~~p~k~~g~~g~h~~~~~e~~ivv~s------d~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 130 NIKPNKVLGYVGQHNFESGEELIVVGS------DEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccCceeeeeccccCCCcceeEEecC------CceEEeeccccchhhhhcchh
Confidence 999888887777776 34444333333 3455555 555556666554
No 327
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.66 E-value=2.3 Score=55.37 Aligned_cols=131 Identities=15% Similarity=0.075 Sum_probs=89.2
Q ss_pred ccCCceEEEEEecCCCC-EEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCC--cEEEE-Ee--cCCCcEEEEEe
Q 000673 556 KVNSHVSRQYFLGHTGA-VLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSG--NLITV-MH--HHVAPVRQIIL 629 (1358)
Q Consensus 556 d~~t~~~~~~l~gH~~~-V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg--~~l~~-~~--~H~~~V~~l~~ 629 (1358)
|++.|+.+....-|... |..++ |..-... -.....+.|=.+..+..||.+-. +++.. .+ .......|++-
T Consensus 510 DLe~GKVV~eW~~~~~~~v~~~~--p~~K~aq--lt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aT 585 (794)
T PF08553_consen 510 DLERGKVVEEWKVHDDIPVVDIA--PDSKFAQ--LTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFAT 585 (794)
T ss_pred ecCCCcEEEEeecCCCcceeEec--ccccccc--cCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEe
Confidence 68889999999888755 66664 2100000 01245667888999999998753 23211 11 12345667776
Q ss_pred CCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 630 SPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 630 spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
+.+ .+||.|+.+|.|||||--..+.-..|++-..+|..|..+.||++++..| + ..+-+++.
T Consensus 586 t~~-------G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-------~--tyLlLi~t 646 (794)
T PF08553_consen 586 TED-------GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-------K--TYLLLIDT 646 (794)
T ss_pred cCC-------ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-------c--ceEEEEEE
Confidence 655 5899999999999999544444456788888999999999999999544 2 57777765
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.54 E-value=9.9 Score=50.60 Aligned_cols=156 Identities=10% Similarity=0.026 Sum_probs=96.6
Q ss_pred CcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCc
Q 000673 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWS 589 (1358)
Q Consensus 510 ~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~ 589 (1358)
..|.+..+..+..- ++.+..+|.|.+++- ++.. .....--.+.|.+.+|+ ||+
T Consensus 69 ~~i~s~~fl~d~~~----i~v~~~~G~iilvd~---------------et~~-~eivg~vd~GI~aaswS-----~De-- 121 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNS----ICVITALGDIILVDP---------------ETLE-LEIVGNVDNGISAASWS-----PDE-- 121 (1265)
T ss_pred cceEEEEEecccce----EEEEecCCcEEEEcc---------------cccc-eeeeeeccCceEEEeec-----CCC--
Confidence 46777776666654 899999999999532 1211 11111235789999998 787
Q ss_pred cCcEEEEEeCCCcEEEEeC----CC-------------------CcEEEEEecCCC---------------------cEE
Q 000673 590 FNEVLVSGSMDCSIRIWDL----GS-------------------GNLITVMHHHVA---------------------PVR 625 (1358)
Q Consensus 590 ~~~~L~Sgs~D~tI~lWDl----~s-------------------g~~l~~~~~H~~---------------------~V~ 625 (1358)
++++-...+.++.+-+- -. |+.-..|.|..+ .=+
T Consensus 122 --e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~ 199 (1265)
T KOG1920|consen 122 --ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKT 199 (1265)
T ss_pred --cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCc
Confidence 88888888888766543 11 111123432211 123
Q ss_pred EEEeCCCCCCCCCCCeEEEE-----eCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCe
Q 000673 626 QIILSPPQTEHPWSDCFLSV-----GEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDV 700 (1358)
Q Consensus 626 ~l~~spd~~~~~~g~~l~S~-----s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~Dgt 700 (1358)
+|.|--| |++|+.. ..-+.|++||-+ |..-.+-....+--.+++|.|.|..+++-..+ ++ |+.
T Consensus 200 ~IsWRgD------g~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~---~s--d~~ 267 (1265)
T KOG1920|consen 200 SISWRGD------GEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCK---TS--DSD 267 (1265)
T ss_pred eEEEccC------CcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeec---CC--CCc
Confidence 5777777 8888873 233899999977 44322222222223489999999999876543 33 468
Q ss_pred EEEEEC
Q 000673 701 LFIWDV 706 (1358)
Q Consensus 701 V~vWd~ 706 (1358)
|.++.-
T Consensus 268 IvffEr 273 (1265)
T KOG1920|consen 268 IVFFER 273 (1265)
T ss_pred EEEEec
Confidence 888875
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=90.83 E-value=10 Score=46.05 Aligned_cols=230 Identities=10% Similarity=-0.019 Sum_probs=103.3
Q ss_pred CceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeC------cCcCEEEeeeccccccccCccccccccc
Q 000673 16 SHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCG------HSAPIADLSICYPAMVSRDGKAEHWKAE 89 (1358)
Q Consensus 16 ~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~G------H~~~Vt~l~~~~~~~~~~~~~~~~~~~~ 89 (1358)
.++|+|++.| |=.++|.|.+||.+.|-|++ ++..-...-+.. ....|+++.|.-- ....|
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~R---GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm-~~~~D--------- 151 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLR---GPAVIYNENIRESFLSKSSSSYVTSIEFSVM-TLGGD--------- 151 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETT---TTEEEEEEEGGG--T-SS----EEEEEEEEE-E-TTS---------
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECC---CCeEEeeccccccccccccccCeeEEEEEEE-ecCCC---------
Confidence 5789999997 77899999999999999998 333221111222 2356888887522 01111
Q ss_pred ccCcccccccCCCCeEEEeeCCCeEEEEECCC---Cc-eEEEe--e-CCCCCCCCceeeeeCCCCCceEEEEeeccCCcc
Q 000673 90 NSSNVMGKSSLDNGALISACTDGVLCVWSRSS---GH-CRRRR--K-LPPWVGSPSVICTLPSNPRYVCIGCCFIDTNQL 162 (1358)
Q Consensus 90 ~~~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~---G~-c~~~~--~-l~~~~~~~s~i~~~~~~~~~~~l~c~~~~~~~~ 162 (1358)
....-.|+.|...|.+.++.+.- |. ..... . .. .+....|.++ ..+++..
T Consensus 152 ---------~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~--~~~i~~I~~i------------~~~~G~~ 208 (395)
T PF08596_consen 152 ---------GYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNH--DSPILSIIPI------------NADTGES 208 (395)
T ss_dssp ---------SSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--S--S----EEEEE------------ETTT--B
T ss_pred ---------cccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccC--CCceEEEEEE------------ECCCCCc
Confidence 22336788889999999998761 21 11110 0 00 0112222222 2121111
Q ss_pred cccccccccccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcE
Q 000673 163 SDHHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRL 242 (1358)
Q Consensus 163 ~~~~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~ 242 (1358)
-.+ ....+++..-.........-.....|+++.+.+.+..+..+. .-.....++|+.. +.......|+....+|.
T Consensus 209 a~A-t~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~---~~~~~~~~~vv~~-~~~~~~~~Lv~l~~~G~ 283 (395)
T PF08596_consen 209 ALA-TISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD---DPFLCSSASVVPT-ISRNGGYCLVCLFNNGS 283 (395)
T ss_dssp -B--BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S---S-EEEEEEEEEEE-E-EEEEEEEEEEETTSE
T ss_pred ccC-chhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeec---cccccceEEEEee-cccCCceEEEEEECCCc
Confidence 000 000000000000000000111345677787777766555543 1112444555421 01123668899999999
Q ss_pred EEEecccCcccccccCCcceecCCcccceEecc-CcccCceEEEEecCCcEEEEEecCce
Q 000673 243 QLVPISKESHLDREEGNGLCKSSSQLDMAILQN-GVVEGGHLVSVATCGNIIALVLKDHC 301 (1358)
Q Consensus 243 vkvW~l~~~~~~~~~~~~l~e~~~~~~~~~~~~-~~~~~v~~vs~s~dg~~~~~~~~~~~ 301 (1358)
+++..+..-. +...+.... .........+++++|+.++..+....
T Consensus 284 i~i~SLP~Lk--------------ei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~ 329 (395)
T PF08596_consen 284 IRIYSLPSLK--------------EIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEI 329 (395)
T ss_dssp EEEEETTT----------------EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEE
T ss_pred EEEEECCCch--------------HhhcccCCCccccccccccEECCCCCEEEEeCcccE
Confidence 9999999752 111111111 11123356677899987766655443
No 330
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=90.72 E-value=0.88 Score=54.58 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=88.3
Q ss_pred EEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEE
Q 000673 565 YFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1358)
Q Consensus 565 ~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S 644 (1358)
.+..-.-+|..+.++ |.| .+|++...- -|.+|+-..+..+.+|. | ..|.-+.|+|. +.+|.+
T Consensus 27 ~~~~~~~p~~~~~~S-----P~G----~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~------~kYL~t 88 (561)
T COG5354 27 RFESENWPVAYVSES-----PLG----TYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPN------EKYLVT 88 (561)
T ss_pred cccccCcchhheeec-----Ccc----hheehhhcc-ceEEccccchhheeeee-c-CCceecccCcc------cceeee
Confidence 333345678888887 777 888876654 48899988777666664 3 46999999999 788887
Q ss_pred EeCC---------------CcEEEEECCCCcEEEEecCCCCC--cE-EEEEcCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 645 VGED---------------FSVALASLETLRVERMFPGHPNY--PA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 645 ~s~D---------------~tV~lwdl~~~~~~~~l~gH~~~--V~-~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
=+.. +.+.+||+.+|..+..|.+...+ .+ -+.|+-++.|++-. .+ ..++|+++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv------v~---~sl~i~e~ 159 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV------VG---SSLYIHEI 159 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh------cc---CeEEEEec
Confidence 5443 35999999999999999887665 55 78999999987732 11 58999997
Q ss_pred CCCe
Q 000673 707 KTGA 710 (1358)
Q Consensus 707 ~tg~ 710 (1358)
|+.
T Consensus 160 -t~n 162 (561)
T COG5354 160 -TDN 162 (561)
T ss_pred -CCc
Confidence 544
No 331
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.70 E-value=11 Score=42.29 Aligned_cols=103 Identities=12% Similarity=0.077 Sum_probs=72.9
Q ss_pred CCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCc--E--EEEE---ecCCCcEEEEEeCCCCCCCCCCCe
Q 000673 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN--L--ITVM---HHHVAPVRQIILSPPQTEHPWSDC 641 (1358)
Q Consensus 569 H~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~--~--l~~~---~~H~~~V~~l~~spd~~~~~~g~~ 641 (1358)
.-..-+.++|+ ||+ +.++++-+..+.|..+++.... . .+.+ ..-.+..-.+++..+ |++
T Consensus 132 ~~~~pNGi~~s-----~dg---~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~------G~l 197 (246)
T PF08450_consen 132 GLGFPNGIAFS-----PDG---KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD------GNL 197 (246)
T ss_dssp EESSEEEEEEE-----TTS---SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT------S-E
T ss_pred CcccccceEEC-----Ccc---hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC------CCE
Confidence 35667899998 677 2355678888899999986322 1 1223 222234778999888 888
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE-cCCCCEEEE
Q 000673 642 FLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW-DCPRGYIAC 686 (1358)
Q Consensus 642 l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~-spd~~~L~~ 686 (1358)
.++....+.|.++|.+ |+.+..+.-....+++++| -|+.+.|.+
T Consensus 198 ~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred EEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 8888889999999988 8888777655458999999 466666654
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.52 E-value=1.1 Score=55.80 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=77.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEE-EEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcE---EE--Ee
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLIT-VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV---ER--MF 665 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~-~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~---~~--~l 665 (1358)
++++-|+.-|.+.+++-..++.+. ...+-.+.+..+.++++ ..++|.|+..+.|.++-+..+.+ .. .+
T Consensus 46 ~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~------e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 46 EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV------EYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch------hHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 899999999999999987776543 34445566677778887 67888899999999998876432 11 11
Q ss_pred -cCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 666 -PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 666 -~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
..|...|++++|++++..+++ +|.-|.|..-.+.+
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ys--------GD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYS--------GDSQGKVVLTELDS 155 (726)
T ss_pred cccCCceEEEEEecccccEEee--------cCCCceEEEEEech
Confidence 236788999999999999994 34347887777765
No 333
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=90.09 E-value=17 Score=35.87 Aligned_cols=93 Identities=12% Similarity=0.047 Sum_probs=60.4
Q ss_pred CEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEE
Q 000673 526 YAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI 605 (1358)
Q Consensus 526 ~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~l 605 (1358)
+.|+.|++|..|++++ ..+.+..+.. ++.|++|.-. . + ..++-|-.+|||-+
T Consensus 16 ~eLlvGs~D~~IRvf~-----------------~~e~~~Ei~e-~~~v~~L~~~-----~-~----~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFK-----------------GDEIVAEITE-TDKVTSLCSL-----G-G----GRFAYALANGTVGV 67 (111)
T ss_pred ceEEEecCCcEEEEEe-----------------CCcEEEEEec-ccceEEEEEc-----C-C----CEEEEEecCCEEEE
Confidence 3499999999999933 2335555554 5788888754 1 2 67999999999999
Q ss_pred EeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCC-CeEEEEeCCCcEE
Q 000673 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWS-DCFLSVGEDFSVA 652 (1358)
Q Consensus 606 WDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g-~~l~S~s~D~tV~ 652 (1358)
|+- .+.+.+.+.... ++++.+..-+ .+| .-|++|-.+|.|-
T Consensus 68 Y~~--~~RlWRiKSK~~-~~~~~~~D~~---gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 68 YDR--SQRLWRIKSKNQ-VTSMAFYDIN---GDGVPELIVGWSNGKVE 109 (111)
T ss_pred EeC--cceeeeeccCCC-eEEEEEEcCC---CCCceEEEEEecCCeEE
Confidence 974 344455544333 5565554321 002 2678888887663
No 334
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.87 E-value=51 Score=40.05 Aligned_cols=25 Identities=16% Similarity=0.128 Sum_probs=19.4
Q ss_pred CCeEEEeeCCCeEEEEECCCCceEE
Q 000673 102 NGALISACTDGVLCVWSRSSGHCRR 126 (1358)
Q Consensus 102 ~~~L~S~s~Dg~l~lWdl~~G~c~~ 126 (1358)
+..++.++.+|.+...|..+|+.+-
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W 229 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIW 229 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhh
Confidence 3456677789999999999998653
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.78 E-value=5.3 Score=52.17 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=66.7
Q ss_pred CCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEE----EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCC
Q 000673 525 PYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR----QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD 600 (1358)
Q Consensus 525 p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~----~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D 600 (1358)
+...++|-.+..++. ||+... ..+.+ +.+ ......+|++-. .+| +||.||.+
T Consensus 542 ~e~tflGls~n~lfr--iDpR~~-----------~~k~v~~~~k~Y-~~~~~Fs~~aTt-----~~G-----~iavgs~~ 597 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFR--IDPRLS-----------GNKLVDSQSKQY-SSKNNFSCFATT-----EDG-----YIAVGSNK 597 (794)
T ss_pred CCceEEEECCCceEE--eccCCC-----------CCceeecccccc-ccCCCceEEEec-----CCc-----eEEEEeCC
Confidence 334788888888777 343221 11111 112 234556777643 444 89999999
Q ss_pred CcEEEEeCCCCcE-EEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEEC
Q 000673 601 CSIRIWDLGSGNL-ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL 656 (1358)
Q Consensus 601 ~tI~lWDl~sg~~-l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl 656 (1358)
|.||+||- .|+. ...|.+-..||..|..+.| |+++++.+. ..+.|+++
T Consensus 598 G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~D------GkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 598 GDIRLYDR-LGKRAKTALPGLGDPIIGIDVTAD------GKWILATCK-TYLLLIDT 646 (794)
T ss_pred CcEEeecc-cchhhhhcCCCCCCCeeEEEecCC------CcEEEEeec-ceEEEEEE
Confidence 99999994 4443 3446677899999999999 888877764 56777775
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.64 E-value=0.61 Score=58.52 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=69.7
Q ss_pred CCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 000673 599 MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD 678 (1358)
Q Consensus 599 ~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~s 678 (1358)
..|+|.|+ .++|++-+.... .-.+++++|+|. .-.++.|-.-|.+.+|...+.+.-.....|..+|..+.|+
T Consensus 39 r~GSVtIf-adtGEPqr~Vt~-P~hatSLCWHpe------~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS 110 (1416)
T KOG3617|consen 39 RGGSVTIF-ADTGEPQRDVTY-PVHATSLCWHPE------EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWS 110 (1416)
T ss_pred CCceEEEE-ecCCCCCccccc-ceehhhhccChH------HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEec
Confidence 34667776 356765433211 112567999998 4567788888999999998877766667899999999999
Q ss_pred CCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 679 CPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 679 pd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
|+|..+++ .|+-|.|.+|...
T Consensus 111 ~~G~~l~t--------~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 111 HDGTVLMT--------LDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCeEEE--------cCCCceeEEEEee
Confidence 99999994 4555899999775
No 337
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.30 E-value=12 Score=45.59 Aligned_cols=105 Identities=13% Similarity=0.019 Sum_probs=68.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCC
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNY 671 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~ 671 (1358)
..+..++.|+.+...|..+|+.+-+... +....+.. + +..+..++.|+.+..+|.++|+.+-....-...
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~------~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~ 326 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--D------GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR 326 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--E------CCEEEEEcCCCeEEEEECCCCcEEEcccccCCC
Confidence 4666777899999999999987755432 11111222 2 567778889999999999999876544321111
Q ss_pred -cEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 672 -PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 672 -V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
..+... .+.+++++. . ||.+++.|.++|+.+...+
T Consensus 327 ~~~sp~v--~~g~l~v~~------~--~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 327 LLTAPVL--YNGYLVVGD------S--EGYLHWINREDGRFVAQQK 362 (394)
T ss_pred cccCCEE--ECCEEEEEe------C--CCEEEEEECCCCCEEEEEE
Confidence 112222 245566432 2 4899999999999887664
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=88.54 E-value=20 Score=43.58 Aligned_cols=190 Identities=13% Similarity=0.118 Sum_probs=93.2
Q ss_pred ccCCCcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEE-ecCCCCEEEEEEeccccC
Q 000673 506 VHKEKIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYF-LGHTGAVLCLAAHRMVGT 584 (1358)
Q Consensus 506 ~~h~~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l-~gH~~~V~~l~~sp~~~~ 584 (1358)
....++|+++.. ++..| ++.|+++|.+.|.+. .+...-.. ..+.. ..+ ......|+++.|.-+.-.
T Consensus 83 ~~~~g~vtal~~-S~iGF----vaigy~~G~l~viD~--RGPavI~~--~~i~~----~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 83 DAKQGPVTALKN-SDIGF----VAIGYESGSLVVIDL--RGPAVIYN--ENIRE----SFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp ---S-SEEEEEE--BTSE----EEEEETTSEEEEEET--TTTEEEEE--EEGGG------T-SS----EEEEEEEEEE-T
T ss_pred eccCCcEeEEec-CCCcE----EEEEecCCcEEEEEC--CCCeEEee--ccccc----cccccccccCeeEEEEEEEecC
Confidence 344688999774 68888 999999999999553 22210000 00000 000 112456889999754432
Q ss_pred CCCCccCcEEEEEeCCCcEEEEeCC--C-CcE----EEEEecCCCcEEEEE-eCCCCCCC--------------CCCCeE
Q 000673 585 AKGWSFNEVLVSGSMDCSIRIWDLG--S-GNL----ITVMHHHVAPVRQII-LSPPQTEH--------------PWSDCF 642 (1358)
Q Consensus 585 ~dg~~~~~~L~Sgs~D~tI~lWDl~--s-g~~----l~~~~~H~~~V~~l~-~spd~~~~--------------~~g~~l 642 (1358)
-|+ +..-.|+.|...|.+.+|.+. . +.. ......+.++|..+. |..+.... ..-..+
T Consensus 150 ~D~-ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 150 GDG-YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp TSS-SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred CCc-ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 333 334688999999999999875 1 222 122234667777666 32221000 011234
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc-----CCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeC
Q 000673 643 LSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD-----CPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1358)
Q Consensus 643 ~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~s-----pd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~G 717 (1358)
+....+..+|++.+-+.+..+......-....+.+- ..+..|++-.. ||.|+++.+..=+.+..++-
T Consensus 229 vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~--------~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN--------NGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp EEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET--------TSEEEEEETTT--EEEEEE-
T ss_pred EEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC--------CCcEEEEECCCchHhhcccC
Confidence 555557889999999888776554332223344552 24555554332 49999999988666665543
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.13 E-value=51 Score=37.12 Aligned_cols=106 Identities=14% Similarity=0.014 Sum_probs=74.3
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEE-EecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEE
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQY-FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIW 606 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~-l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lW 606 (1358)
+++|+|.+.+..+++. +|...-. .. .+++.|-+.- -| ++++-|...+.+++-
T Consensus 26 v~igSHs~~~~avd~~---------------sG~~~We~il--g~RiE~sa~v------vg----dfVV~GCy~g~lYfl 78 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQ---------------SGNLIWEAIL--GVRIECSAIV------VG----DFVVLGCYSGGLYFL 78 (354)
T ss_pred EEEecCCceEEEecCC---------------CCcEEeehhh--CceeeeeeEE------EC----CEEEEEEccCcEEEE
Confidence 8899999988775543 3332211 11 2344443331 13 679999999999999
Q ss_pred eCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEec
Q 000673 607 DLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFP 666 (1358)
Q Consensus 607 Dl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~ 666 (1358)
+..+|.....|..-...=.+-...++ +..+.+++.|++....|.++..|+...+
T Consensus 79 ~~~tGs~~w~f~~~~~vk~~a~~d~~------~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 79 CVKTGSQIWNFVILETVKVRAQCDFD------GGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EecchhheeeeeehhhhccceEEcCC------CceEEEecCCCcEEEecccccceEEecc
Confidence 99999888877654322222334455 8899999999999999999999988765
No 340
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.70 E-value=9.2 Score=44.38 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=67.3
Q ss_pred cEEEEEeCCCc-EEEEeCCCCcEEEEEecCCCcEE--EEEeCCCCCCCCCCCeEEEEeC-----CCcEEEEECC-CCcEE
Q 000673 592 EVLVSGSMDCS-IRIWDLGSGNLITVMHHHVAPVR--QIILSPPQTEHPWSDCFLSVGE-----DFSVALASLE-TLRVE 662 (1358)
Q Consensus 592 ~~L~Sgs~D~t-I~lWDl~sg~~l~~~~~H~~~V~--~l~~spd~~~~~~g~~l~S~s~-----D~tV~lwdl~-~~~~~ 662 (1358)
..++-+-.-|+ ..+||..+++.+..+....+.-. --.|+|| |++|.+.-. .|.|-+||.+ +.+.+
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~d------G~~LytTEnd~~~g~G~IgVyd~~~~~~ri 91 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPD------GRLLYTTENDYETGRGVIGVYDAARGYRRI 91 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCC------CCEEEEeccccCCCcEEEEEEECcCCcEEE
Confidence 56666666665 46899999887765432221111 1468999 888888644 5789999999 67888
Q ss_pred EEecCCCCCcEEEEEcCCCCEEEEEe
Q 000673 663 RMFPGHPNYPAKVVWDCPRGYIACLC 688 (1358)
Q Consensus 663 ~~l~gH~~~V~~v~~spd~~~L~~g~ 688 (1358)
..|+.|.-.+..+.+.|||+.|+++-
T Consensus 92 ~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 92 GEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred eEecCCCcChhhEEEcCCCCEEEEEc
Confidence 89999877788999999998888764
No 341
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=1.6 Score=56.87 Aligned_cols=88 Identities=11% Similarity=0.108 Sum_probs=65.2
Q ss_pred cEEEEEeCCCcEEEEeCCCC-cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000673 592 EVLVSGSMDCSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg-~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~ 670 (1358)
..++-|+.-|-|-..|.... .+++.=..-.++|++++|+.+ |..++.|-.+|.|.+||+..++.++.+.-|..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d------g~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD------GSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC------CceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 46888888888888877542 112222234679999999999 89999999999999999999999988876655
Q ss_pred CcE---EEEEcCCCCEEE
Q 000673 671 YPA---KVVWDCPRGYIA 685 (1358)
Q Consensus 671 ~V~---~v~~spd~~~L~ 685 (1358)
+.+ .+.+..++..++
T Consensus 174 p~t~vi~v~~t~~nS~ll 191 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLL 191 (1206)
T ss_pred ccceEEEEEEeCCCcEEE
Confidence 554 344455556566
No 342
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=86.68 E-value=9.3 Score=42.51 Aligned_cols=172 Identities=13% Similarity=0.153 Sum_probs=81.1
Q ss_pred chhhHHHHHHHHHhhc-CCCcChhH---HHHHHHHHHHHHhcCCCcchHHHHHHHHHhh---HhhhccccccchhHhHHh
Q 000673 1118 AMTSHIIVAAALAIWY-PSLVKPTL---AMLVVQPLIKLVMATNEKYSSTAAELLAEGM---ESTWKTCIGFEIPRLIGD 1190 (1358)
Q Consensus 1118 ~~~~~~~v~~~~~~~~-~~~~~~~~---~~~~~~~l~~ll~~~~~~~~~~aiel~~~g~---~~~w~~~~~~~~~~~l~~ 1190 (1358)
.+-.++.-+-.+.... +....+.+ .+.+...|...+.+.++.+...|.++++.=+ ..-+++|++ .++..|+.
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~Ll~ 101 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-ILLPPLLK 101 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHH
Confidence 3444555555554444 23333333 4455578888888888999999988776544 223444432 23332321
Q ss_pred HHhhhhhccCCCCCcCCCCCCchhHHHHHHhhhcccchhccCh--hHH-HHHHHHHHhhcCCCChHHH-HHHHHHHHHHh
Q 000673 1191 IFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADI--LGF-LTVVESQIWSTASDSPVHL-VSIMTIIRVVR 1266 (1358)
Q Consensus 1191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~ia~~~~--~~f-~~~~~~~i~~~~~~~~~~~-~~l~~l~~li~ 1266 (1358)
.+ .. ....+...|.++| ..|....+ +.. ...+.... +..+|.-+ ..+..+..+++
T Consensus 102 ~~------~~-------~~~~i~~~a~~~L-----~~i~~~~~~~~~~~~~~l~~~~---~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 102 KL------GD-------SKKFIREAANNAL-----DAIIESCSYSPKILLEILSQGL---KSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp GG------G----------HHHHHHHHHHH-----HHHHTTS-H--HHHHHHHHHHT---T-S-HHHHHHHHHHHHHHHT
T ss_pred HH------cc-------ccHHHHHHHHHHH-----HHHHHHCCcHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHH
Confidence 11 11 1123455667777 33555555 333 33333333 44455433 44444444889
Q ss_pred cCh---hHHHH--hHHHHHHHhhhhcCCCChHhHHhhHHHHHHHHHHHHhccce
Q 000673 1267 GSP---RNVAQ--HLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPM 1315 (1358)
Q Consensus 1267 ~~p---~~~~~--~l~~~~~~v~~~lDp~~~~~r~~~l~~~~~~l~~~v~~~p~ 1315 (1358)
+.| ..+.. .++.+++.+.++|.=.++..|+.+ -.++..+-+.||.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~A----r~~~~~l~~~~~~ 210 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAA----RECLWALYSHFPE 210 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHH----HHHHHHHHHHH-H
T ss_pred HccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHH----HHHHHHHHHHCCH
Confidence 988 33333 468999999999988888888744 4444455566764
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.60 E-value=8.2 Score=43.07 Aligned_cols=109 Identities=17% Similarity=0.036 Sum_probs=79.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCC
Q 000673 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPN 670 (1358)
Q Consensus 591 ~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~ 670 (1358)
+.+++-||-.+.++--|..+|+.+..-.. ...+.+-+.- - |++++-|+..+.+.+.+.++|.....|..-.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-v------gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~- 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-V------GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE- 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-E------CCEEEEEEccCcEEEEEecchhheeeeeehh-
Confidence 36788888888888888888876643211 2333333322 1 7899999999999999999998887776543
Q ss_pred Cc-EEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 671 YP-AKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 671 ~V-~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
.| ......+++..+.+|+. |++.|.-|.++..++...+
T Consensus 94 ~vk~~a~~d~~~glIycgsh--------d~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSH--------DGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred hhccceEEcCCCceEEEecC--------CCcEEEecccccceEEecc
Confidence 33 24566789999997543 3999999999988887644
No 344
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=86.53 E-value=1.6 Score=47.76 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=48.0
Q ss_pred cEEEEEeCCCcEEEEeCCC-CcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCC
Q 000673 592 EVLVSGSMDCSIRIWDLGS-GNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHP 669 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~s-g~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~ 669 (1358)
.-++.|+.|+.|.+|...- |.....+..-...|-+.. |. ...+.+.++++.|+.|+.|++.-++.+.....|.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I--p~---~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI--PN---GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceecc--cc---ccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 6788999999999998751 111111111122332322 22 1125689999999999999999988887777776
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=86.17 E-value=19 Score=45.73 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=65.2
Q ss_pred CCcEEEEeCCC----C-cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEE-EeCCCcEEEEECCCCcE------------
Q 000673 600 DCSIRIWDLGS----G-NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS-VGEDFSVALASLETLRV------------ 661 (1358)
Q Consensus 600 D~tI~lWDl~s----g-~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S-~s~D~tV~lwdl~~~~~------------ 661 (1358)
+++|.+.|..+ + +.+..+. -......+.++|| |++++. +..+.+|.+.|+++.+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPD------GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPD------GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCC------CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence 67899999988 3 4444443 3456788999999 776655 55599999999988652
Q ss_pred EEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 662 ERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 662 ~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
+....- ...+...+|+++|.-..+... |..|-.||+.+
T Consensus 368 vaevev-GlGPLHTaFDg~G~aytslf~--------dsqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPEL-GLGPLHTAFDGRGNAYTTLFL--------DSQIVKWNIEA 405 (635)
T ss_pred EEeecc-CCCcceEEECCCCCEEEeEee--------cceeEEEehHH
Confidence 233222 335668899999875543332 37999999976
No 346
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.94 E-value=13 Score=49.49 Aligned_cols=115 Identities=12% Similarity=0.196 Sum_probs=71.7
Q ss_pred EEEEEeccccCCCCCccCcEEEE-----EeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEe--
Q 000673 574 LCLAAHRMVGTAKGWSFNEVLVS-----GSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG-- 646 (1358)
Q Consensus 574 ~~l~~sp~~~~~dg~~~~~~L~S-----gs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s-- 646 (1358)
+.+.|- -|| ++++. ...-++|++||-+ |.+-.+-....+-=.+++|-|. |..+++..
T Consensus 199 ~~IsWR-----gDg----~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPs------gs~iA~iq~~ 262 (1265)
T KOG1920|consen 199 TSISWR-----GDG----EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPS------GSLIAAIQCK 262 (1265)
T ss_pred ceEEEc-----cCC----cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCC------CCeEeeeeec
Confidence 347774 556 77776 3333899999976 5543332222333457899997 88888763
Q ss_pred -CCCcEEEEECCC---CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 647 -EDFSVALASLET---LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 647 -~D~tV~lwdl~~---~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
.|..|.++.-+. |.....++-....+..++|+.++..|++--. .-....|++|-..+.
T Consensus 263 ~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~-----~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 263 TSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTS-----NLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeec-----ccccceEEEEEecCe
Confidence 466788887432 2333334444445889999999999986321 111134888876553
No 347
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.43 E-value=4.6 Score=50.68 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=77.5
Q ss_pred CcEEEEEeeccCcccCCEEEEEEcCCcEEEEEecCcccCCCCCCccccCCceEE-EEEecCCCCEEEEEEeccccCCCCC
Q 000673 510 KIVSSSMVISESFYAPYAIVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSR-QYFLGHTGAVLCLAAHRMVGTAKGW 588 (1358)
Q Consensus 510 ~~Vts~~~i~~~~~~p~~lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~-~~l~gH~~~V~~l~~sp~~~~~dg~ 588 (1358)
..|.=.++.....| ++.|+.-|.++++. ..+ ++.. ....|-.+.+.....| ++.
T Consensus 34 ~~v~lTc~dst~~~----l~~GsS~G~lyl~~--R~~-------------~~~~~~~~~~~~~~~~~~~vs-----~~e- 88 (726)
T KOG3621|consen 34 ARVKLTCVDATEEY----LAMGSSAGSVYLYN--RHT-------------GEMRKLKNEGATGITCVRSVS-----SVE- 88 (726)
T ss_pred ceEEEEEeecCCce----EEEecccceEEEEe--cCc-------------hhhhcccccCccceEEEEEec-----chh-
Confidence 33433335566667 99999999999933 211 1111 1122333444445555 444
Q ss_pred ccCcEEEEEeCCCcEEEEeCCCCcE-----EEEE-ecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCC
Q 000673 589 SFNEVLVSGSMDCSIRIWDLGSGNL-----ITVM-HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1358)
Q Consensus 589 ~~~~~L~Sgs~D~tI~lWDl~sg~~-----l~~~-~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~ 658 (1358)
.++|.|++.+.|.++-+..+.. +..+ +.|...|+++.|+++ +..+.+|..-|+|.+-.+.+
T Consensus 89 ---~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~------~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 89 ---YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKN------GMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ---HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccc------ccEEeecCCCceEEEEEech
Confidence 7888999999999998765332 1112 237789999999999 89999999999999988877
No 348
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=82.59 E-value=0.69 Score=58.68 Aligned_cols=143 Identities=11% Similarity=0.068 Sum_probs=88.8
Q ss_pred EecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCC--CCcEEEEE-----ecCCCcEEEEEeCCCCCCCCC
Q 000673 566 FLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG--SGNLITVM-----HHHVAPVRQIILSPPQTEHPW 638 (1358)
Q Consensus 566 l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~--sg~~l~~~-----~~H~~~V~~l~~spd~~~~~~ 638 (1358)
++|-.|.|..|+|..... |.+ . -.-|...+||++ .|+....+ .-...++.-+.|.|- .+.
T Consensus 128 ~kgf~G~v~dl~fah~~~-pk~----~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~---~~~ 194 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKC-PKG----R-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPI---AVN 194 (1283)
T ss_pred HhcCCCCcccccccccCC-hHH----H-----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccc---ccc
Confidence 467788899999842111 333 2 333568899886 45543333 233456677777764 222
Q ss_pred CCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEE-----------EcCCCCEEEEEecCCccccCCCCeEEEEE--
Q 000673 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVV-----------WDCPRGYIACLCRDHSRTSDAVDVLFIWD-- 705 (1358)
Q Consensus 639 g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~-----------~spd~~~L~~g~~d~sgssD~DgtV~vWd-- 705 (1358)
.-+++.+-.+++|++.+..+... ..|.+|..++..++ .+|||..++..|.| |.++.|.
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d--------G~v~f~Qiy 265 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD--------GSVGFYQIY 265 (1283)
T ss_pred cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC--------Cccceeeee
Confidence 56888888999999988765432 55667877665553 58999999977655 5555554
Q ss_pred ---CCCCeEEEEEeCCCCceEEEeeecc
Q 000673 706 ---VKTGARERVLRGTASHSMFDHFCKG 730 (1358)
Q Consensus 706 ---~~tg~~~~~l~GH~~~v~~~~~~~~ 730 (1358)
.+.-.|+...+.|...-..+..|..
T Consensus 266 i~g~~~~rclhewkphd~~p~vC~lc~~ 293 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDKHPRVCWLCHK 293 (1283)
T ss_pred eeccccHhhhhccCCCCCCCceeeeecc
Confidence 4445566777778733333333643
No 349
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.04 E-value=8.7 Score=49.00 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=27.7
Q ss_pred CCCeEEEeeCCCeEEEEECCCCceEEEeeCC
Q 000673 101 DNGALISACTDGVLCVWSRSSGHCRRRRKLP 131 (1358)
Q Consensus 101 d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~ 131 (1358)
+..+|++.+.|++||+||+.+++|+....+.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 6789999999999999999999998877553
No 350
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.75 E-value=8.3 Score=46.99 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=85.1
Q ss_pred ccCCceEEEEEecCCCCEEEEEEeccccCCCCCccC----cEEEEEeCCCcEEEEeCCCC-c-EEEEEecCC----CcEE
Q 000673 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFN----EVLVSGSMDCSIRIWDLGSG-N-LITVMHHHV----APVR 625 (1358)
Q Consensus 556 d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~----~~L~Sgs~D~tI~lWDl~sg-~-~l~~~~~H~----~~V~ 625 (1358)
|++.|+.+....-|.+ |+-+.+.| +. .+. ..-+.|=.|..|+-||.+-. + .+..-.+|. ..-.
T Consensus 362 DIE~GKIVeEWk~~~d-i~mv~~t~-----d~-K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs 434 (644)
T KOG2395|consen 362 DIERGKIVEEWKFEDD-INMVDITP-----DF-KFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS 434 (644)
T ss_pred ecccceeeeEeeccCC-cceeeccC-----Cc-chhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence 6888888888887766 77777763 32 111 22344667889999998732 2 222222221 2234
Q ss_pred EEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEE
Q 000673 626 QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWD 705 (1358)
Q Consensus 626 ~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd 705 (1358)
|.+-.. ..+++.||.+|.|||||--..+.-..|+|-..+|..|..+.+|++|++.| + ..+-+-+
T Consensus 435 c~aTT~-------sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-------~--tyLlLi~ 498 (644)
T KOG2395|consen 435 CFATTE-------SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-------K--TYLLLID 498 (644)
T ss_pred eeeecC-------CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-------c--cEEEEEE
Confidence 444433 35899999999999999633334456788889999999999999999544 2 4666665
Q ss_pred C
Q 000673 706 V 706 (1358)
Q Consensus 706 ~ 706 (1358)
.
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
No 351
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.95 E-value=65 Score=39.32 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=68.7
Q ss_pred CCCCccCcEEE-EEeCCC----cEEEEeCCCCcEEEE-EecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCC---------
Q 000673 585 AKGWSFNEVLV-SGSMDC----SIRIWDLGSGNLITV-MHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDF--------- 649 (1358)
Q Consensus 585 ~dg~~~~~~L~-Sgs~D~----tI~lWDl~sg~~l~~-~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~--------- 649 (1358)
||| ++++ +-+..| ++++.|+.+|+.+.. +..- . -..+.|.++ ++.|+-...|.
T Consensus 133 pdg----~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~-~~~~~W~~d------~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 133 PDG----KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-K-FSSVSWSDD------GKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp TTS----SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-E-SEEEEECTT------SSEEEEEECSTTTSS-CCGC
T ss_pred CCC----CEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-c-cceEEEeCC------CCEEEEEEeCcccccccCCC
Confidence 788 6544 434444 599999999987653 2221 1 123999999 67666554333
Q ss_pred --cEEEEECCCCcE--EEEecCCCCC--cEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 650 --SVALASLETLRV--ERMFPGHPNY--PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 650 --tV~lwdl~~~~~--~~~l~gH~~~--V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
.|.+|.+.+... ...|...... ...+..++|+++|+..+.. +.. ...+++-|+..+
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~--~~~--~s~v~~~d~~~~ 262 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS--GTS--ESEVYLLDLDDG 262 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES--SSS--EEEEEEEECCCT
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc--ccc--CCeEEEEecccc
Confidence 378888877642 3445443333 4588999999999876643 111 267999999875
No 352
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=80.71 E-value=45 Score=42.77 Aligned_cols=102 Identities=22% Similarity=0.306 Sum_probs=69.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECC---------CCcE
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMH-HHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE---------TLRV 661 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~-~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~---------~~~~ 661 (1358)
+..+.-+.-.++.|||...+.....-. ...+.|..++|... ++|+.++++|-.+.|.++.-. +..+
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst----~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~ 117 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTST----PDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP 117 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeec----CCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence 343444444578999999887554322 45688999999754 348999999999999999642 1123
Q ss_pred EEEe--cCCC-CCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 662 ERMF--PGHP-NYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 662 ~~~l--~gH~-~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
++.+ ..|+ .+|.+..|.++|.+++ |+ + +.++|+|-.
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~~G~LvV-------~s-G--Nqlfv~dk~ 156 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLKDGTLVV-------GS-G--NQLFVFDKW 156 (631)
T ss_pred eEEEEeecCCCCCccceeEecCCeEEE-------Ee-C--CEEEEECCC
Confidence 3332 3343 4788999999988877 22 2 689998753
No 353
>PRK02888 nitrous-oxide reductase; Validated
Probab=80.00 E-value=16 Score=46.36 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=45.1
Q ss_pred CCeEEEEeCCCcEEEEECCC-----CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe
Q 000673 639 SDCFLSVGEDFSVALASLET-----LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1358)
Q Consensus 639 g~~l~S~s~D~tV~lwdl~~-----~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~ 710 (1358)
|++... .++.|.+.|.++ .+.+..++ -...+..+.++|||+++++++. .+.+|.|.|+++.+
T Consensus 288 GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVank-------lS~tVSVIDv~k~k 354 (635)
T PRK02888 288 GKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGK-------LSPTVTVIDVRKLD 354 (635)
T ss_pred CCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCC-------CCCcEEEEEChhhh
Confidence 554443 367899999998 35555555 3347889999999999997543 23799999998744
No 354
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=78.97 E-value=1.5e+02 Score=35.28 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=69.8
Q ss_pred cCCCCeEEEee----------CCCeEEEEECCCCceEEEeeCCCC----CCCCceeeeeCCCCCceEEEEeeccCCcccc
Q 000673 99 SLDNGALISAC----------TDGVLCVWSRSSGHCRRRRKLPPW----VGSPSVICTLPSNPRYVCIGCCFIDTNQLSD 164 (1358)
Q Consensus 99 s~d~~~L~S~s----------~Dg~l~lWdl~~G~c~~~~~l~~~----~~~~s~i~~~~~~~~~~~l~c~~~~~~~~~~ 164 (1358)
+||++.+.+++ ..-.|.+||.++-.-...+.+|+- +........+..+.++..+.-..
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T-------- 115 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT-------- 115 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES--------
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC--------
Confidence 67888888765 355899999998877777777731 12233333444455544443333
Q ss_pred cccccccccccccccccCCCCCCCCceEEEEeCCCceEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEE
Q 000673 165 HHSFESVEGDLVSEDKEVPMKNPPKCTLVIVDTYGLTIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQL 244 (1358)
Q Consensus 165 ~~~~~~~~g~~~s~d~~~~~~~~~~~~I~i~D~~tl~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vk 244 (1358)
+...|-|+|....+++..+.- ..|..+.+.+ ++-+.+.|.||.+.
T Consensus 116 -----------------------Pa~SVtVVDl~~~kvv~ei~~-------PGC~~iyP~~-----~~~F~~lC~DGsl~ 160 (342)
T PF06433_consen 116 -----------------------PATSVTVVDLAAKKVVGEIDT-------PGCWLIYPSG-----NRGFSMLCGDGSLL 160 (342)
T ss_dssp -----------------------SSEEEEEEETTTTEEEEEEEG-------TSEEEEEEEE-----TTEEEEEETTSCEE
T ss_pred -----------------------CCCeEEEEECCCCceeeeecC-------CCEEEEEecC-----CCceEEEecCCceE
Confidence 667899999999999887765 2344444331 33678888888887
Q ss_pred EecccC
Q 000673 245 VPISKE 250 (1358)
Q Consensus 245 vW~l~~ 250 (1358)
.-.++.
T Consensus 161 ~v~Ld~ 166 (342)
T PF06433_consen 161 TVTLDA 166 (342)
T ss_dssp EEEETS
T ss_pred EEEECC
Confidence 777774
No 355
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=78.65 E-value=15 Score=44.35 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=55.4
Q ss_pred chhccChhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhcCh-hHHHHhHHHHHHHhhhhcCCCChHhHHhh
Q 000673 1227 SLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSP-RNVAQHLDKVVNFILQTMDPGNSVMRKTC 1298 (1358)
Q Consensus 1227 ~ia~~~~~~f~~~~~~~i~~~~~~~~~~~~~l~~l~~li~~~p-~~~~~~l~~~~~~v~~~lDp~~~~~r~~~ 1298 (1358)
-+|+-.|..=|..|...| ...+.|-....+..+-+|++.-+ ..|...||.++=.+++..|-.....||.|
T Consensus 398 ~las~~P~~~I~~i~~~I--lt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKta 468 (516)
T KOG2956|consen 398 TLASHLPLQCIVNISPLI--LTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTA 468 (516)
T ss_pred HHHhhCchhHHHHHhhHH--hcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhH
Confidence 388999999999999999 44566665555555556666555 57888999999999999999999889864
No 356
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=78.52 E-value=3 Score=34.51 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=26.9
Q ss_pred eeeecCCCceeEeecccCccCCcEEEEEECccchh
Q 000673 1315 MVSLNDTSTKLAVGDAIGDIKKASIRVYDMQRYQN 1349 (1358)
Q Consensus 1315 ~v~f~~~tqrlAvg~~~~~~~~g~i~iyDlkta~~ 1349 (1358)
.++||+.+--||+|+. +|.|.||.+ ++.|
T Consensus 16 ~~~w~P~mdLiA~~t~-----~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 16 CMSWCPTMDLIALGTE-----DGEVLVYRL-NWQR 44 (47)
T ss_pred EEEECCCCCEEEEEEC-----CCeEEEEEC-CCcC
Confidence 7999999999999999 999999999 6665
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=78.31 E-value=42 Score=41.51 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=53.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCC
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNY 671 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~ 671 (1358)
..++.-....+|.++.-...+...++... ..+..+-. |..|+..+.+ .|.+||.++++.++.+... .
T Consensus 80 n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---------G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~ 146 (443)
T PF04053_consen 80 NRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---------GNLLGVKSSD-FICFYDWETGKLIRRIDVS--A 146 (443)
T ss_dssp SEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----------SSSEEEEETT-EEEEE-TTT--EEEEESS---E
T ss_pred ccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---------CcEEEEECCC-CEEEEEhhHcceeeEEecC--C
Confidence 45677777889999633233322233221 12444432 4566666554 8999999999999999854 3
Q ss_pred cEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 672 PAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 672 V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
|..|.|++++.+++..+. .+++|++...
T Consensus 147 vk~V~Ws~~g~~val~t~---------~~i~il~~~~ 174 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTK---------DSIYILKYNL 174 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S----------SEEEEEE-H
T ss_pred CcEEEEECCCCEEEEEeC---------CeEEEEEecc
Confidence 899999999999986442 4888887643
No 358
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=77.02 E-value=1.4 Score=56.08 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=87.7
Q ss_pred cCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCc
Q 000673 533 FSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN 612 (1358)
Q Consensus 533 ~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~ 612 (1358)
.-|+..||+.+...+ ++...-.++....-...+.-+.|.|-. ++. -++.-+-.|++|++-...+..
T Consensus 151 ~vg~lfVy~vd~l~G--------~iq~~l~v~~~~p~gs~~~~V~wcp~~--~~~----~~ic~~~~~~~i~lL~~~ra~ 216 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQG--------EIQPQLEVTPITPYGSDPQLVSWCPIA--VNK----VYICYGLKGGEIRLLNINRAL 216 (1283)
T ss_pred HhhhhheeehHhhcc--------ccccceEEeecCcCCCCcceeeecccc--ccc----ceeeeccCCCceeEeeechHH
Confidence 446777877664322 122111222222333445556666522 222 677778888899876665433
Q ss_pred EEEEEecCCCcEEEEE-----------eCCCCCCCCCCCeEEEEeCCCcEEEEECC-----CCcEEEEecCCCCCcE-EE
Q 000673 613 LITVMHHHVAPVRQII-----------LSPPQTEHPWSDCFLSVGEDFSVALASLE-----TLRVERMFPGHPNYPA-KV 675 (1358)
Q Consensus 613 ~l~~~~~H~~~V~~l~-----------~spd~~~~~~g~~l~S~s~D~tV~lwdl~-----~~~~~~~l~gH~~~V~-~v 675 (1358)
. ..|.+|...++.++ ++|| |..|+.++.||.++.|.+. ..+|++....|..... |.
T Consensus 217 ~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpD------Gtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~ 289 (1283)
T KOG1916|consen 217 R-SLFRSHSQRVTDMAFFAEGVLKLASLSPD------GTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCW 289 (1283)
T ss_pred H-HHHHhcCCCcccHHHHhhchhhheeeCCC------CcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceee
Confidence 2 33556776666554 4566 9999999999999998753 3356666667764332 22
Q ss_pred EEcCCC---------CEEEEEecCCccccCCCCeEEEEECCCCeEE
Q 000673 676 VWDCPR---------GYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1358)
Q Consensus 676 ~~spd~---------~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~ 712 (1358)
.++.+. .++++ ++|...-+++|.-...+|+
T Consensus 290 lc~~~~~~~v~i~~w~~~It-------ttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 290 LCHKQEILVVSIGKWVLRIT-------TTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeccccccCCccceeEEEEe-------cccCCcceeEeeccchhhh
Confidence 232221 23442 4555678889987665554
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=76.81 E-value=40 Score=39.70 Aligned_cols=112 Identities=14% Similarity=0.172 Sum_probs=69.6
Q ss_pred cCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCc-EEEE-EecCCCcEEEEEeCCCCCCCCCCCeEEEE
Q 000673 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGN-LITV-MHHHVAPVRQIILSPPQTEHPWSDCFLSV 645 (1358)
Q Consensus 568 gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~-~l~~-~~~H~~~V~~l~~spd~~~~~~g~~l~S~ 645 (1358)
...+.|+++.-. + ..|+.|. .++|.+|++...+ .... +....-.|.++... +++++.|
T Consensus 86 ~~~g~V~ai~~~------~-----~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--------~~~I~vg 145 (321)
T PF03178_consen 86 EVKGPVTAICSF------N-----GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--------KNYILVG 145 (321)
T ss_dssp EESS-EEEEEEE------T-----TEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--------TTEEEEE
T ss_pred eecCcceEhhhh------C-----CEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--------ccEEEEE
Confidence 357899999853 2 3344443 4889999998777 4433 22223367777665 4689999
Q ss_pred eCCCcEEEEECCC-CcEEEEecC--CCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 646 GEDFSVALASLET-LRVERMFPG--HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 646 s~D~tV~lwdl~~-~~~~~~l~g--H~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
...+.+.++..+. .+.+..+.. ...+++++.|-++++.++ .+|.+|.+.++...
T Consensus 146 D~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i--------~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 146 DAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTII--------VGDKDGNLFVLRYN 202 (321)
T ss_dssp ESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEE--------EEETTSEEEEEEE-
T ss_pred EcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEE--------EEcCCCeEEEEEEC
Confidence 9889999875443 332333322 234578888886666666 34556999998775
No 360
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=76.14 E-value=6.1 Score=47.35 Aligned_cols=83 Identities=20% Similarity=0.249 Sum_probs=56.5
Q ss_pred CCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEE-EecC-------C---
Q 000673 600 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVER-MFPG-------H--- 668 (1358)
Q Consensus 600 D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~-~l~g-------H--- 668 (1358)
.+...++|+.+++....... ...+....|+|+ |+.++-+. ++.|.++++.+++..+ +..| -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~------g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw 93 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPD------GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDW 93 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SS------STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecC------CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccce
Confidence 35688999998775443333 567889999999 88888886 5789999988875543 2223 0
Q ss_pred ------CCCcEEEEEcCCCCEEEEEecC
Q 000673 669 ------PNYPAKVVWDCPRGYIACLCRD 690 (1358)
Q Consensus 669 ------~~~V~~v~~spd~~~L~~g~~d 690 (1358)
-+.-..+-|+||+++|+..-.|
T Consensus 94 vyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 94 VYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp HHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred eccccccccccceEECCCCCEEEEEEEC
Confidence 1123578899999999976655
No 361
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=75.94 E-value=17 Score=39.04 Aligned_cols=101 Identities=23% Similarity=0.274 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhcCCCcchHHHHHHHH----HhhHhhhccccccchhHhHHhHHhh
Q 000673 1119 MTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLA----EGMESTWKTCIGFEIPRLIGDIFFQ 1194 (1358)
Q Consensus 1119 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~aiel~~----~g~~~~w~~~~~~~~~~~l~~~~~~ 1194 (1358)
+..+|+++|-++..||..+.| -...|...|.+++..+|.+|+-.++ +|| --|+..+ +.+++.
T Consensus 5 R~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-ik~k~~l---~~~~l~----- 70 (178)
T PF12717_consen 5 RNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-IKVKGQL---FSRILK----- 70 (178)
T ss_pred HHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-eeehhhh---hHHHHH-----
Confidence 567899999999999988877 4556788899999999999986654 566 3555553 122222
Q ss_pred hhhccCCCCCcCCCCCCchhHHHHHHhhhcccchhcc-ChhHHHHHHHHHHhhc
Q 000673 1195 IECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMA-DILGFLTVVESQIWST 1247 (1358)
Q Consensus 1195 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~ia~~-~~~~f~~~~~~~i~~~ 1247 (1358)
|..- +++.+...|+..+ ..++.. +|..|...+-.-+...
T Consensus 71 --~l~D-------~~~~Ir~~A~~~~-----~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 71 --LLVD-------ENPEIRSLARSFF-----SELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred --HHcC-------CCHHHHHHHHHHH-----HHHHHhccchHHHHHHHHHHHHH
Confidence 1111 2345566666666 457777 7877877777777633
No 362
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.89 E-value=39 Score=45.25 Aligned_cols=155 Identities=11% Similarity=0.128 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhhHhhhccccc--cchhHhHHhHHhhh-
Q 000673 1119 MTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIG--FEIPRLIGDIFFQI- 1195 (1358)
Q Consensus 1119 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~aiel~~~g~~~~w~~~~~--~~~~~~l~~~~~~~- 1195 (1358)
+-.++.++..+..-++....|-+. .+-..+.+-+.++++++|.+|+-.++ +|. .|++ .+..+..-+++=.+
T Consensus 135 rE~al~il~s~~~~~~~~~~~~~~-~l~~lf~q~~~d~s~~vr~~a~rA~~-a~~----~~~~~~~~~~~~~~~llP~~l 208 (1075)
T KOG2171|consen 135 RESALLILSSLPETFGNTLQPHLD-DLLRLFSQTMTDPSSPVRVAAVRALG-AFA----EYLENNKSEVDKFRDLLPSLL 208 (1075)
T ss_pred hHHHHHHHHhhhhhhccccchhHH-HHHHHHHHhccCCcchHHHHHHHHHH-HHH----HHhccchHHHHHHHHHhHHHH
Confidence 345777888777777666665332 33345566667888899999987777 442 4442 33333322221100
Q ss_pred h-hccCCCCCcCCCCCCchhHHHHHHhhhcccchhccChhHHHHHHHHHHh-------hcCCCChHHHHHHHHHHHHHhc
Q 000673 1196 E-CVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQIW-------STASDSPVHLVSIMTIIRVVRG 1267 (1358)
Q Consensus 1196 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~ia~~~~~~f~~~~~~~i~-------~~~~~~~~~~~~l~~l~~li~~ 1267 (1358)
. |... .-.++.+.+..+-++| ..++...|+.|-.-+...|. +.+-+...+..+|-.|+-+++.
T Consensus 209 ~vl~~~----i~~~d~~~a~~~l~~l-----~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 209 NVLQEV----IQDGDDDAAKSALEAL-----IELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHhHhh----hhccchHHHHHHHHHH-----HHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 0 0000 1113344455566666 66999999988777776665 4445555555666555556666
Q ss_pred Chh---HHHHhHHHHHHHhhhhcC
Q 000673 1268 SPR---NVAQHLDKVVNFILQTMD 1288 (1358)
Q Consensus 1268 ~p~---~~~~~l~~~~~~v~~~lD 1288 (1358)
.|. ...++++.++-.+|+++=
T Consensus 280 Ap~~~k~~~~~~~~lv~~~l~~mt 303 (1075)
T KOG2171|consen 280 APAMCKKLALLGHTLVPVLLAMMT 303 (1075)
T ss_pred hHHHhhhchhhhccHHHHHHHhcC
Confidence 443 334477778888887763
No 363
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=73.20 E-value=96 Score=38.99 Aligned_cols=119 Identities=12% Similarity=0.056 Sum_probs=73.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCc--EEEEEeCCCCCCCCCCCeEEEEe---------CCCcEEEEECCCCc
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP--VRQIILSPPQTEHPWSDCFLSVG---------EDFSVALASLETLR 660 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~--V~~l~~spd~~~~~~g~~l~S~s---------~D~tV~lwdl~~~~ 660 (1358)
..++.++.|+.|.-+|.++|+.+-++...... -..+.-+|.- .+..++.++ .++.+..+|.++|+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v----~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI----VKKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE----ECCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 56777889999999999999998877643321 0111122220 123444443 46789999999999
Q ss_pred EEEEecCCCC--------------------Cc-EEEEEcCCCCEEEEEecCCccc------------cCCCCeEEEEECC
Q 000673 661 VERMFPGHPN--------------------YP-AKVVWDCPRGYIACLCRDHSRT------------SDAVDVLFIWDVK 707 (1358)
Q Consensus 661 ~~~~l~gH~~--------------------~V-~~v~~spd~~~L~~g~~d~sgs------------sD~DgtV~vWd~~ 707 (1358)
.+-.+..... .+ ...+..+.+..++++..+ ++ .+.++.|+-.|.+
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~--g~~~~~~~~~~~~~~~~~~~l~Ald~~ 264 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGN--GSPWNWGGRRTPGDNLYTDSIVALDAD 264 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCC--CCCCccCCccCCCCCCceeeEEEEcCC
Confidence 8876643211 01 134455566777766543 11 1123589999999
Q ss_pred CCeEEEEEe
Q 000673 708 TGARERVLR 716 (1358)
Q Consensus 708 tg~~~~~l~ 716 (1358)
+|+.+-.++
T Consensus 265 tG~~~W~~~ 273 (488)
T cd00216 265 TGKVKWFYQ 273 (488)
T ss_pred CCCEEEEee
Confidence 999887654
No 364
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=72.45 E-value=1.8e+02 Score=33.09 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=83.9
Q ss_pred EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe
Q 000673 528 IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD 607 (1358)
Q Consensus 528 lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD 607 (1358)
|+.|+++| ++++.... .....+.. +...|..+..-| +- +.|+.= .|+++.+++
T Consensus 10 L~vGt~~G-l~~~~~~~--------------~~~~~~i~--~~~~I~ql~vl~-----~~----~~llvL-sd~~l~~~~ 62 (275)
T PF00780_consen 10 LLVGTEDG-LYVYDLSD--------------PSKPTRIL--KLSSITQLSVLP-----EL----NLLLVL-SDGQLYVYD 62 (275)
T ss_pred EEEEECCC-EEEEEecC--------------CccceeEe--ecceEEEEEEec-----cc----CEEEEE-cCCccEEEE
Confidence 99999999 77755411 11122222 233489888863 22 344433 359999999
Q ss_pred CCCCcEEEEE--------------ecCCCcEEEEE-eCCCCCCCCCCCeEEEEeCCCcEEEEECCCC-----cEEEEecC
Q 000673 608 LGSGNLITVM--------------HHHVAPVRQII-LSPPQTEHPWSDCFLSVGEDFSVALASLETL-----RVERMFPG 667 (1358)
Q Consensus 608 l~sg~~l~~~--------------~~H~~~V~~l~-~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~-----~~~~~l~g 667 (1358)
+..-...... ......|...+ -... .+...+.+...++|.+|..... +..+.+.-
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~-----~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l 137 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH-----EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL 137 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeecccc-----ccceEEEEEECCEEEEEEEECCcccccceeEEEEc
Confidence 8754433311 11223444444 1111 1445555556668999887653 45555553
Q ss_pred CCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEE
Q 000673 668 HPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVL 715 (1358)
Q Consensus 668 H~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l 715 (1358)
. ..+..+.|. ++.+++|.. +...+.|+.++.....+
T Consensus 138 p-~~~~~i~~~--~~~i~v~~~---------~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 138 P-DPPSSIAFL--GNKICVGTS---------KGFYLIDLNTGSPSELL 173 (275)
T ss_pred C-CCcEEEEEe--CCEEEEEeC---------CceEEEecCCCCceEEe
Confidence 3 578899998 566665432 46888999987765554
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=72.44 E-value=76 Score=38.54 Aligned_cols=107 Identities=12% Similarity=0.143 Sum_probs=78.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeE-EEEe--CCCcEEEEECCCCcEEEEecCC
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF-LSVG--EDFSVALASLETLRVERMFPGH 668 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l-~S~s--~D~tV~lwdl~~~~~~~~l~gH 668 (1358)
+..+....+..|.+-|..+.+.++....-. ....++++|+ ++.+ ++-+ .++++.+.|..+++.+...+.-
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~------~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG 159 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPD------GKYVYVANAGNGNNTVSVIDAATNKVTATIPVG 159 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCC------CCEEEEEecccCCceEEEEeCCCCeEEEEEecC
Confidence 577777778999999988877776654322 5668899999 5544 4444 3799999999999988875533
Q ss_pred CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEE
Q 000673 669 PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1358)
Q Consensus 669 ~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~ 713 (1358)
. ....++++|+|..+++.- ..++.|.+.|..+....+
T Consensus 160 ~-~P~~~a~~p~g~~vyv~~-------~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 160 N-TPTGVAVDPDGNKVYVTN-------SDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred C-CcceEEECCCCCeEEEEe-------cCCCeEEEEeCCCcceec
Confidence 2 338999999999888643 225899999987665553
No 366
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=72.36 E-value=21 Score=43.57 Aligned_cols=106 Identities=17% Similarity=0.076 Sum_probs=66.5
Q ss_pred EEeCCCCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCc-CEEEeeeccccccccCcccccc
Q 000673 8 CIWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSA-PIADLSICYPAMVSRDGKAEHW 86 (1358)
Q Consensus 8 ~lw~~~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~-~Vt~l~~~~~~~~~~~~~~~~~ 86 (1358)
+.|+=......+.+|..+|++++.|+...=|.|.|+|+.. ...++|..|-.. .+.=+..... +..
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-----~~vvrmWKGYRdAqc~wi~~~~~------~~~--- 364 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-----GIVVRMWKGYRDAQCGWIEVPEE------GDR--- 364 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-----ChhhhhhccCccceEEEEEeecc------ccc---
Confidence 3344445556799999999999999877779999999997 567788888654 2222211111 000
Q ss_pred cccccCcccccc--c-CCCCeEEEeeCCCeEEEEECCCCceEEEeeC
Q 000673 87 KAENSSNVMGKS--S-LDNGALISACTDGVLCVWSRSSGHCRRRRKL 130 (1358)
Q Consensus 87 ~~~~~~~~~~~~--s-~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l 130 (1358)
+..+..... . ..--+++-+-.-|.|.||+++.|..+.....
T Consensus 365 ---~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 365 ---DRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ---ccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 000111111 1 1122344566799999999999988766554
No 367
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=72.22 E-value=1.5e+02 Score=37.29 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=61.2
Q ss_pred CCCcEEEEeCCCCcEEEEEecCCCc--------------------E-EEEEeCCCCCCCCCCCeEEEEeCCC--------
Q 000673 599 MDCSIRIWDLGSGNLITVMHHHVAP--------------------V-RQIILSPPQTEHPWSDCFLSVGEDF-------- 649 (1358)
Q Consensus 599 ~D~tI~lWDl~sg~~l~~~~~H~~~--------------------V-~~l~~spd~~~~~~g~~l~S~s~D~-------- 649 (1358)
.++.+.-.|..+|+.+-++...... | .+.++.+. +..++.++.|+
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~------~g~V~vg~~~g~~~~~~~~ 246 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPK------TNLVYVGTGNGSPWNWGGR 246 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCC------CCEEEEECCCCCCCccCCc
Confidence 4678999999999988877542111 0 01222222 45666666554
Q ss_pred ----------cEEEEECCCCcEEEEec--CCCCC----cEEEEEc----CCCC---EEEEEecCCccccCCCCeEEEEEC
Q 000673 650 ----------SVALASLETLRVERMFP--GHPNY----PAKVVWD----CPRG---YIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 650 ----------tV~lwdl~~~~~~~~l~--gH~~~----V~~v~~s----pd~~---~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
.+.-+|+++|+.+-.++ .|... .....+. -++. .+++++ . +|.++..|.
T Consensus 247 ~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~------~--~G~l~ald~ 318 (488)
T cd00216 247 RTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP------K--NGFFYVLDR 318 (488)
T ss_pred cCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC------C--CceEEEEEC
Confidence 79999999999987654 22111 0001111 1232 344332 2 389999999
Q ss_pred CCCeEEEEE
Q 000673 707 KTGARERVL 715 (1358)
Q Consensus 707 ~tg~~~~~l 715 (1358)
++|+.+-..
T Consensus 319 ~tG~~~W~~ 327 (488)
T cd00216 319 TTGKLISAR 327 (488)
T ss_pred CCCcEeeEe
Confidence 999987654
No 368
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=71.72 E-value=1.1e+02 Score=35.08 Aligned_cols=119 Identities=16% Similarity=0.077 Sum_probs=73.9
Q ss_pred CCEEEEEEeccccCCCCCccCcEEEEEeCCC--cEEEEeCCCCcEEEEEecCCC-cEEEEEeCCCCCCCCCCCeEEEEeC
Q 000673 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGSMDC--SIRIWDLGSGNLITVMHHHVA-PVRQIILSPPQTEHPWSDCFLSVGE 647 (1358)
Q Consensus 571 ~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~--tI~lWDl~sg~~l~~~~~H~~-~V~~l~~spd~~~~~~g~~l~S~s~ 647 (1358)
.....|.|. .+| .++-|.+.-| .|+.+|+.+|+.+....-... --..+....+ +.+.-.=.
T Consensus 45 aFTQGL~~~-----~~g----~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-------~l~qLTWk 108 (264)
T PF05096_consen 45 AFTQGLEFL-----DDG----TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-------KLYQLTWK 108 (264)
T ss_dssp -EEEEEEEE-----ETT----EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-------EEEEEESS
T ss_pred ccCccEEec-----CCC----EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-------EEEEEEec
Confidence 345567773 345 7888888877 799999999998765432211 1112222222 33344445
Q ss_pred CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 648 D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
++...+||.++.+.+..++-. +.=+.++. |++.|+. +|+...++.+|.++-+..+.++
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~--dg~~Li~--------SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYP-GEGWGLTS--DGKRLIM--------SDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-S-SS--EEEE--CSSCEEE--------E-SSSEEEEE-TTT-SEEEEEE
T ss_pred CCeEEEEccccceEEEEEecC-CcceEEEc--CCCEEEE--------ECCccceEEECCcccceEEEEE
Confidence 788999999999999888643 35567773 5666662 3334699999999988877765
No 369
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=71.59 E-value=26 Score=43.07 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=69.1
Q ss_pred CCCCccCcEEEEEeCCCcEE--EEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC-CC--cEEEEECCCC
Q 000673 585 AKGWSFNEVLVSGSMDCSIR--IWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE-DF--SVALASLETL 659 (1358)
Q Consensus 585 ~dg~~~~~~L~Sgs~D~tI~--lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~-D~--tV~lwdl~~~ 659 (1358)
||| +.++++...|+... +.|+..+. +.++..-.+.-+.=.|+|| |+.++-.++ .| .|.+.|++.+
T Consensus 247 pDG---~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spd------G~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 247 PDG---SKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPD------GSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CCC---CEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCC------CCEEEEEeCCCCCcceEEECCCCC
Confidence 888 46788888888755 45666555 4445443343345668888 787765543 44 4566677766
Q ss_pred cEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 660 RVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 660 ~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
... .+.-....-..-.|+|||++|+..... +++-.|.+.|+.++.-++.+.
T Consensus 317 ~~~-riT~~~~~~~~p~~SpdG~~i~~~~~~-----~g~~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 317 QVT-RLTFSGGGNSNPVWSPDGDKIVFESSS-----GGQWDIDKNDLASGGKIRILT 367 (425)
T ss_pred cee-EeeccCCCCcCccCCCCCCEEEEEecc-----CCceeeEEeccCCCCcEEEcc
Confidence 553 232222222367899999999864421 211236677777665455554
No 370
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=70.53 E-value=1.3e+02 Score=36.64 Aligned_cols=122 Identities=15% Similarity=0.195 Sum_probs=85.6
Q ss_pred CEEEEEEeccccCCCCCccCcEEEEEe--CCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeE-EEEeCC
Q 000673 572 AVLCLAAHRMVGTAKGWSFNEVLVSGS--MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCF-LSVGED 648 (1358)
Q Consensus 572 ~V~~l~~sp~~~~~dg~~~~~~L~Sgs--~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l-~S~s~D 648 (1358)
.-..+++. +++ +...++-. .++++.+-|-.+++.+.....-..+ ..+++.|+ |+.+ ++-..+
T Consensus 117 ~P~~~~~~-----~~~---~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~------g~~vyv~~~~~ 181 (381)
T COG3391 117 GPVGLAVD-----PDG---KYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPD------GNKVYVTNSDD 181 (381)
T ss_pred CCceEEEC-----CCC---CEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCC------CCeEEEEecCC
Confidence 44567776 555 24444444 3789999999999988875544445 88999999 7744 444589
Q ss_pred CcEEEEECCCCcEEE-----EecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEE
Q 000673 649 FSVALASLETLRVER-----MFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1358)
Q Consensus 649 ~tV~lwdl~~~~~~~-----~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~ 714 (1358)
+.|.+.|.+.....+ ... -......+.++|++.++.+.... +. |+.+.+-|..++.....
T Consensus 182 ~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~---~~--~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 182 NTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDG---SG--SNNVLKIDTATGNVTAT 246 (381)
T ss_pred CeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEecc---CC--CceEEEEeCCCceEEEe
Confidence 999999987766653 121 22356789999999988876543 22 37999999998877665
No 371
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=70.22 E-value=3.9 Score=51.85 Aligned_cols=71 Identities=20% Similarity=0.165 Sum_probs=60.7
Q ss_pred CEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcE
Q 000673 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSV 651 (1358)
Q Consensus 572 ~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV 651 (1358)
.+++|+||| .. -+|++|=.-|.+.+|...+.+.-..-..|..+|.-+.|+|+ |.+++++..-|.|
T Consensus 61 hatSLCWHp-----e~----~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~------G~~l~t~d~~g~v 125 (1416)
T KOG3617|consen 61 HATSLCWHP-----EE----FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHD------GTVLMTLDNPGSV 125 (1416)
T ss_pred ehhhhccCh-----HH----HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCC------CCeEEEcCCCcee
Confidence 366799995 33 58889989999999998877765566679999999999999 9999999999999
Q ss_pred EEEECC
Q 000673 652 ALASLE 657 (1358)
Q Consensus 652 ~lwdl~ 657 (1358)
.+|...
T Consensus 126 ~lwr~d 131 (1416)
T KOG3617|consen 126 HLWRYD 131 (1416)
T ss_pred EEEEee
Confidence 999876
No 372
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=66.79 E-value=2.7 Score=51.95 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=66.4
Q ss_pred cCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEE-CCCC-cEEEEecC
Q 000673 590 FNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS-LETL-RVERMFPG 667 (1358)
Q Consensus 590 ~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwd-l~~~-~~~~~l~g 667 (1358)
+.+++++|...+.+.++|++.. +.......+..|..+.+.|=. ++++|+-. |+.|.+|| .++- .+++.+..
T Consensus 165 d~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~-----~nY~cs~~-dg~iAiwD~~rnienpl~~i~~ 237 (783)
T KOG1008|consen 165 DTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFS-----PNYFCSNS-DGDIAIWDTYRNIENPLQIILR 237 (783)
T ss_pred Ccchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCC-----CCceeccc-cCceeeccchhhhccHHHHHhh
Confidence 3488999999999999998732 122222234456667777721 56887776 99999999 3332 22333322
Q ss_pred CC----CCcEEEEEcCCCC-EEEEEecCCccccCCCCeEEEEECCC
Q 000673 668 HP----NYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 668 H~----~~V~~v~~spd~~-~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
.. ..+..++|.|... .+++... | .++||.+|+..
T Consensus 238 ~~N~~~~~l~~~aycPtrtglla~l~R------d-S~tIrlydi~~ 276 (783)
T KOG1008|consen 238 NENKKPKQLFALAYCPTRTGLLAVLSR------D-SITIRLYDICV 276 (783)
T ss_pred CCCCcccceeeEEeccCCcchhhhhcc------C-cceEEEecccc
Confidence 22 2488999999754 3343222 2 37999999853
No 373
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.40 E-value=3.1e+02 Score=34.06 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=48.6
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeecc---ccccccCcccccccc-cccC--
Q 000673 19 VTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICY---PAMVSRDGKAEHWKA-ENSS-- 92 (1358)
Q Consensus 19 Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~---~~~~~~~~~~~~~~~-~~~~-- 92 (1358)
...+.++|+|++++. +.||.-.|+.... .+. ...|..-. ..|.+ +++...++++..-+. .+..
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~-----~r~--k~~G~g~~---~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALA-----WRN--KAFGSGLS---FVWSSRNRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTT-----TEE--EEEEE-SE---EEE-TSSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccC-----Ccc--cccCceeE---EEEecCccEEEEECCCeEEEEEcCccccce
Confidence 578999999999998 6788888888542 111 12222211 11111 122222333333111 1111
Q ss_pred cccccc-----cCCCCeEEEeeCCCeEEEEECCCCceEEEeeCC
Q 000673 93 NVMGKS-----SLDNGALISACTDGVLCVWSRSSGHCRRRRKLP 131 (1358)
Q Consensus 93 ~~~~~~-----s~d~~~L~S~s~Dg~l~lWdl~~G~c~~~~~l~ 131 (1358)
...... .+ |..|...+.+ .|++||+++++.+++...+
T Consensus 104 ~i~~~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~ 145 (443)
T PF04053_consen 104 SIKLPFSVEKIFG-GNLLGVKSSD-FICFYDWETGKLIRRIDVS 145 (443)
T ss_dssp ----SS-EEEEE--SSSEEEEETT-EEEEE-TTT--EEEEESS-
T ss_pred EEcCCcccceEEc-CcEEEEECCC-CEEEEEhhHcceeeEEecC
Confidence 111111 33 6666666655 8999999999999888765
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=66.08 E-value=1.1e+02 Score=36.10 Aligned_cols=112 Identities=9% Similarity=-0.002 Sum_probs=67.9
Q ss_pred ceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCC--CcE----E-EEEecCCCcEEEEEeCCC
Q 000673 560 HVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS--GNL----I-TVMHHHVAPVRQIILSPP 632 (1358)
Q Consensus 560 ~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~s--g~~----l-~~~~~H~~~V~~l~~spd 632 (1358)
+...+.+.+|-..-+.|+|+ ||+ +.+.++=+..+.|.-|++.. +.. . ..+..+.+..-.++...+
T Consensus 152 g~~~~l~~~~~~~~NGla~S-----pDg---~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad 223 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFS-----PDG---KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD 223 (307)
T ss_pred CCEEEeecCcEEecCceEEC-----CCC---CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence 44555566666666889998 787 23445555557777777652 211 1 111122233333444434
Q ss_pred CCCCCCCCeEEEEeCCC-cEEEEECCCCcEEEEecCCCCCcEEEEEc-CCCCEEEE
Q 000673 633 QTEHPWSDCFLSVGEDF-SVALASLETLRVERMFPGHPNYPAKVVWD-CPRGYIAC 686 (1358)
Q Consensus 633 ~~~~~~g~~l~S~s~D~-tV~lwdl~~~~~~~~l~gH~~~V~~v~~s-pd~~~L~~ 686 (1358)
|.+.+++-.++ .|..|+.+ |+.+..+.-....+++++|- |+.+.|.+
T Consensus 224 ------G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 224 ------GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred ------CCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 67666555554 89999988 99888887665688888884 44555554
No 375
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=65.85 E-value=33 Score=41.90 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=59.3
Q ss_pred EEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE----cCC-----------
Q 000673 616 VMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW----DCP----------- 680 (1358)
Q Consensus 616 ~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~----spd----------- 680 (1358)
.|....-.+.++..+|. +++.+....=|.|.|+|+.++..++..+|-.+. .+.| .+.
T Consensus 302 ~l~D~~R~~~~i~~sP~------~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~ 373 (415)
T PF14655_consen 302 GLPDSKREGESICLSPS------GRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPK 373 (415)
T ss_pred eeccCCceEEEEEECCC------CCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccC
Confidence 34444456788999998 787877777799999999999888888775332 1122 111
Q ss_pred -----CCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 681 -----RGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 681 -----~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
..+|+. .+-.-|.|.||++++|..+..++
T Consensus 374 ~~~~~~l~LvI-------yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 374 SSSRFALFLVI-------YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CCCcceEEEEE-------EeccCCeEEEEecCCCCEEEEEE
Confidence 123332 33334899999999999988775
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=63.58 E-value=41 Score=43.29 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=55.2
Q ss_pred CCEEEEEEeccccCCCCCccCcEEEEEe------CCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEE
Q 000673 571 GAVLCLAAHRMVGTAKGWSFNEVLVSGS------MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLS 644 (1358)
Q Consensus 571 ~~V~~l~~sp~~~~~dg~~~~~~L~Sgs------~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S 644 (1358)
..+...+++ ||| +.++--- .|..-.||=...+.....+.. ....+.-.|+|+ |+.+.+
T Consensus 350 ~~vsspaiS-----pdG----~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspD------G~~lw~ 413 (591)
T PRK13616 350 GNITSAALS-----RSG----RQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLD------ADAVWV 413 (591)
T ss_pred cCcccceEC-----CCC----CEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCC------CCceEE
Confidence 456777777 777 5444333 354445553322222233322 223788899999 676666
Q ss_pred EeCC------------CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEE
Q 000673 645 VGED------------FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIAC 686 (1358)
Q Consensus 645 ~s~D------------~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~ 686 (1358)
.+.. +.+.+.+++.++..+ .....|..+.|+|||..++.
T Consensus 414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 414 VVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAM 464 (591)
T ss_pred EecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEE
Confidence 6532 233333444443322 22457999999999999884
No 377
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=62.97 E-value=1.4e+02 Score=33.94 Aligned_cols=111 Identities=9% Similarity=0.013 Sum_probs=68.0
Q ss_pred EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCC-CcEEEEEeCCCCCCCCCCCeE
Q 000673 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHV-APVRQIILSPPQTEHPWSDCF 642 (1358)
Q Consensus 564 ~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~-~~V~~l~~spd~~~~~~g~~l 642 (1358)
+.+.|=...+..|+|. |+. +.+++.....+.|...+. .|+.++++.-.. +-...|++.-+ +.++
T Consensus 15 ~~l~g~~~e~SGLTy~-----pd~---~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~------~~~v 79 (248)
T PF06977_consen 15 KPLPGILDELSGLTYN-----PDT---GTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN------GRYV 79 (248)
T ss_dssp EE-TT--S-EEEEEEE-----TTT---TEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST------TEEE
T ss_pred eECCCccCCccccEEc-----CCC---CeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC------CEEE
Confidence 4566666779999998 443 268888888889888886 588888765432 55788888766 5666
Q ss_pred EEEeCCCcEEEEECCCCc------EEEEec-----CCCCCcEEEEEcCCCCEEEEEec
Q 000673 643 LSVGEDFSVALASLETLR------VERMFP-----GHPNYPAKVVWDCPRGYIACLCR 689 (1358)
Q Consensus 643 ~S~s~D~tV~lwdl~~~~------~~~~l~-----gH~~~V~~v~~spd~~~L~~g~~ 689 (1358)
++--.++.+.+.++.... ....+. .+...+-.++|+|.++.|+++..
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE 137 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE 137 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC
Confidence 666568999999884321 112221 23446789999998777775543
No 378
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=62.73 E-value=1e+02 Score=32.68 Aligned_cols=55 Identities=22% Similarity=0.503 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcChhH----HHHhHHHHHHHhhhhcCCCChHhHHhhHHHHHHHHHHHHhcccee
Q 000673 1256 VSIMTIIRVVRGSPRN----VAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPMV 1316 (1358)
Q Consensus 1256 ~~l~~l~~li~~~p~~----~~~~l~~~~~~v~~~lDp~~~~~r~~~l~~~~~~l~~~v~~~p~v 1316 (1358)
.++..|+..++++|.. .-++||.++..+++-+++ ..|...+..+|..+.+.||..
T Consensus 90 ~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~------~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 90 ITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD------SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred HHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHCCcc
Confidence 4444555577788774 456899999999998886 567888999999999999974
No 379
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=59.93 E-value=39 Score=43.09 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=26.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecC
Q 000673 591 NEVLVSGSMDCSIRIWDLGSGNLITVMHHH 620 (1358)
Q Consensus 591 ~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H 620 (1358)
+.++++-+.|+++|+||+.+++++.++...
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 489999999999999999999998877554
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=59.72 E-value=1.9e+02 Score=37.23 Aligned_cols=94 Identities=11% Similarity=0.054 Sum_probs=55.0
Q ss_pred EEEEEEeccccCCCCCccCcEEEEEeCC------------CcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCC
Q 000673 573 VLCLAAHRMVGTAKGWSFNEVLVSGSMD------------CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD 640 (1358)
Q Consensus 573 V~~l~~sp~~~~~dg~~~~~~L~Sgs~D------------~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~ 640 (1358)
.+.-.|+ ||| ..+.+.+.. +.+.+.+++.++... ...+.|..+.|+|| |.
T Consensus 399 ~t~PsWs-----pDG----~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpD------G~ 460 (591)
T PRK13616 399 LTRPSWS-----LDA----DAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRD------GV 460 (591)
T ss_pred CCCceEC-----CCC----CceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCC------CC
Confidence 6677787 776 555554322 223333454444322 23567999999999 78
Q ss_pred eEEEEeCCCcEEE---EECCCCcE-E---EEe-cCCCCCcEEEEEcCCCCEEE
Q 000673 641 CFLSVGEDFSVAL---ASLETLRV-E---RMF-PGHPNYPAKVVWDCPRGYIA 685 (1358)
Q Consensus 641 ~l~S~s~D~tV~l---wdl~~~~~-~---~~l-~gH~~~V~~v~~spd~~~L~ 685 (1358)
.++-.. ++.|.+ -....|.. + +.+ .+-...+..+.|.+++.+++
T Consensus 461 RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 461 RAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVV 512 (591)
T ss_pred EEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEE
Confidence 777665 467766 44445541 1 112 22333457899999988654
No 381
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.27 E-value=60 Score=36.23 Aligned_cols=66 Identities=11% Similarity=0.005 Sum_probs=47.6
Q ss_pred CCeEEEEeCCCcEEEEECCCCcEEEEe-------c-------CCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEE
Q 000673 639 SDCFLSVGEDFSVALASLETLRVERMF-------P-------GHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1358)
Q Consensus 639 g~~l~S~s~D~tV~lwdl~~~~~~~~l-------~-------gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vW 704 (1358)
++++++...+|.+.+||+.+++++..- . .....|..+..+.+|.-+++- ++ |..|.|
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-------sn--g~~y~y 92 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-------SN--GDSYSY 92 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-------eC--CCEEEe
Confidence 688999999999999999998875332 1 234567788888888777742 22 677888
Q ss_pred ECCCCeEEE
Q 000673 705 DVKTGARER 713 (1358)
Q Consensus 705 d~~tg~~~~ 713 (1358)
|..-+.-.+
T Consensus 93 ~~~L~~W~~ 101 (219)
T PF07569_consen 93 SPDLGCWIR 101 (219)
T ss_pred ccccceeEE
Confidence 876554443
No 382
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=58.65 E-value=36 Score=27.71 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=26.5
Q ss_pred CcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCC
Q 000673 622 APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLET 658 (1358)
Q Consensus 622 ~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~ 658 (1358)
+.|+++.|+|+... .++++-.-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~---~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGG---NDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCc---ccEEEEEccCCeEEEEEccc
Confidence 56899999987310 16788887889999999995
No 383
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=58.28 E-value=51 Score=37.85 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=89.9
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHhhHhhhccccccchhHhHHhHHhhhhhccCCCCCcCCCCCCchhHHHHHHhhh-ccc
Q 000673 1148 PLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGI-LLP 1226 (1358)
Q Consensus 1148 ~l~~ll~~~~~~~~~~aiel~~~g~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~l~ 1226 (1358)
.|-.+|.+++...|.-|+++|++-.+.+=...+..+-+.+|.+.+ .-+..+. +....+..++... -..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~-~~rl~D~----------~~~~~~l~gl~~L~~~~ 71 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFF-CSRLDDH----------ACVQPALKGLLALVKMK 71 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHH-HHHhccH----------hhHHHHHHHHHHHHhCc
Confidence 456678888889999999999988864433455522234554322 2221111 1112223333110 001
Q ss_pred chhccChhHHHHHHHHHHhhcCCCChHHHHHHHHHHH-HHhcChhHHHHhHHHHHHHhhhhcCCC-ChHhHHhhHHHHHH
Q 000673 1227 SLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIR-VVRGSPRNVAQHLDKVVNFILQTMDPG-NSVMRKTCLHTSMA 1304 (1358)
Q Consensus 1227 ~ia~~~~~~f~~~~~~~i~~~~~~~~~~~~~l~~l~~-li~~~p~~~~~~l~~~~~~v~~~lDp~-~~~~r~~~l~~~~~ 1304 (1358)
.+.......+++.+...+. .++.....+.....++. ++++++..+...=+.++..+++.+|-- +| +||..++.
T Consensus 72 ~~~~~~~~~i~~~l~~~~~-~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDP----RnLl~~F~ 146 (262)
T PF14500_consen 72 NFSPESAVKILRSLFQNVD-VQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDP----RNLLLSFK 146 (262)
T ss_pred CCChhhHHHHHHHHHHhCC-hhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCH----HHHHHHHH
Confidence 1122223334444443331 22233345566677777 899988888777789999999999865 44 58888998
Q ss_pred HHHHHHhccce
Q 000673 1305 ALKEIVHVFPM 1315 (1358)
Q Consensus 1305 ~l~~~v~~~p~ 1315 (1358)
+++.+.+.||.
T Consensus 147 l~~~i~~~~~~ 157 (262)
T PF14500_consen 147 LLKVILQEFDI 157 (262)
T ss_pred HHHHHHHhccc
Confidence 88888888884
No 384
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=56.82 E-value=54 Score=40.38 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=58.5
Q ss_pred CcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCC-eEEEEeCCCcEEE--EECCCCcEEEEecCCCCCcEEEEE
Q 000673 601 CSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSD-CFLSVGEDFSVAL--ASLETLRVERMFPGHPNYPAKVVW 677 (1358)
Q Consensus 601 ~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~-~l~S~s~D~tV~l--wdl~~~~~~~~l~gH~~~V~~v~~ 677 (1358)
..+.++|+.+++...... ..+.-..-+|+|| |+ .+++...|+...| .|+.++...+ +..-.+.-..=.|
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspD------G~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~ 289 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPD------GSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSW 289 (425)
T ss_pred ceEEEEeccCCccceeec-cCCccCCccCCCC------CCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccC
Confidence 469999999887544433 2233445789999 55 5556677776555 5666665333 3322222236689
Q ss_pred cCCCCEEEEEecCCccccCCCC--eEEEEECCCCeE
Q 000673 678 DCPRGYIACLCRDHSRTSDAVD--VLFIWDVKTGAR 711 (1358)
Q Consensus 678 spd~~~L~~g~~d~sgssD~Dg--tV~vWd~~tg~~ 711 (1358)
+|||++++-. +|..| .|++.|.+.+..
T Consensus 290 spdG~~ivf~-------Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 290 SPDGSKIVFT-------SDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CCCCCEEEEE-------eCCCCCcceEEECCCCCce
Confidence 9999999853 33334 466667765554
No 385
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.72 E-value=5e+02 Score=32.80 Aligned_cols=156 Identities=11% Similarity=0.114 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHH---HHHhhHhhhccccccchhHhHHhHHhhhhhccCCCCCcCCCCCCchhHHH
Q 000673 1141 LAMLVVQPLIKLVMATNEKYSSTAAEL---LAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIR 1217 (1358)
Q Consensus 1141 ~~~~~~~~l~~ll~~~~~~~~~~aiel---~~~g~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1217 (1358)
....+..+++.-+.+....+|.-|.|- +++...+-.-.|++ +|...++.+.+.. .++.-..+.+-..-.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn-~iFdvL~klsaDs-------d~~V~~~aeLLdRLi 152 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFN-EIFDVLCKLSADS-------DQNVRGGAELLDRLI 152 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchH-HHHHHHHHHhcCC-------ccccccHHHHHHHHH
Confidence 466677778888888888777666654 45555433344442 4444444333222 223333222221112
Q ss_pred HHHhhhcccchhccChhHHHHHHHHHHhhcCCCChHHHHHHHHHHH-HHhcChhHHHHhHHHHHHHhhhhcCCCChHhHH
Q 000673 1218 ETLVGILLPSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIR-VVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRK 1296 (1358)
Q Consensus 1218 ~a~~~~~l~~ia~~~~~~f~~~~~~~i~~~~~~~~~~~~~l~~l~~-li~~~p~~~~~~l~~~~~~v~~~lDp~~~~~r~ 1296 (1358)
...+. -+-++-+-+.||.-|.-.|+..+ |..+..+..-+. |--.-+..+..|||.+.|.+++.|--++.+.|+
T Consensus 153 kdIVt---e~~~tFsL~~~ipLL~eriy~~n---~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~ 226 (675)
T KOG0212|consen 153 KDIVT---ESASTFSLPEFIPLLRERIYVIN---PMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRT 226 (675)
T ss_pred HHhcc---ccccccCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHH
Confidence 22211 22236677999999999997554 444555555555 444555689999999999999999888888898
Q ss_pred hhHHHHHHHHHHHH
Q 000673 1297 TCLHTSMAALKEIV 1310 (1358)
Q Consensus 1297 ~~l~~~~~~l~~~v 1310 (1358)
.|-..--+.|+|+.
T Consensus 227 ~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 227 LTDTLLSEFLAEIR 240 (675)
T ss_pred HHHHHHHHHHHHHh
Confidence 88887778888876
No 386
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=55.82 E-value=1.5e+02 Score=37.43 Aligned_cols=121 Identities=16% Similarity=0.203 Sum_probs=71.3
Q ss_pred cCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCC-----CCcEEEEEecCCC---cE--EEEEeCCCCCCCC
Q 000673 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG-----SGNLITVMHHHVA---PV--RQIILSPPQTEHP 637 (1358)
Q Consensus 568 gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~-----sg~~l~~~~~H~~---~V--~~l~~spd~~~~~ 637 (1358)
|.-..|..+.|.|... .+..-|+.----+.|.+|-+. +++.+..-..+-+ +| ..+.|+|.
T Consensus 54 GqFEhV~GlsW~P~~~-----~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk----- 123 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCT-----ADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK----- 123 (671)
T ss_pred eccceeeeeeecCccc-----CCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-----
Confidence 4445699999986432 222455556667889999875 3444444333221 11 24557776
Q ss_pred CCCeEEEEeCCCcEEEEECCC--CcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 638 WSDCFLSVGEDFSVALASLET--LRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 638 ~g~~l~S~s~D~tV~lwdl~~--~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
...++.-..+..-.+.+++. .+....+.++ +.|.|.+|.+||+.|+++- |++ =.-||||-.
T Consensus 124 -~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~-G~IhCACWT~DG~RLVVAv----GSs---LHSyiWd~~ 186 (671)
T PF15390_consen 124 -KAILTVLTARDVSVLPSVHCDSSRVKADIKTS-GLIHCACWTKDGQRLVVAV----GSS---LHSYIWDSA 186 (671)
T ss_pred -CceEEEEecCceeEeeeeeeCCceEEEeccCC-ceEEEEEecCcCCEEEEEe----CCe---EEEEEecCc
Confidence 55554433333334555543 3344445444 5899999999999998754 222 356899853
No 387
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=54.76 E-value=23 Score=41.71 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=43.3
Q ss_pred cEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC-EEEEEecCCccccCCCCeEEEEECCCCeEEEEEeC
Q 000673 650 SVALASLETLRVERMFPGHPNYPAKVVWDCPRG-YIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1358)
Q Consensus 650 tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~-~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~G 717 (1358)
.|.++|+.+++.+..++.- .++.+|..+.+.+ +|+. ....++.+.|||..||++++++.+
T Consensus 270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~-------~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYA-------LSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEE-------EETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEE-------EcCCCCeEEEEeCcCCcEEeehhc
Confidence 4788899999999888742 2577899988776 5542 223358999999999999999874
No 388
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=54.26 E-value=4.2e+02 Score=31.05 Aligned_cols=136 Identities=14% Similarity=0.063 Sum_probs=73.1
Q ss_pred ceEEEEeCCCc----eEEEEEEecccccCCcceEEEeecCCCCCcceEEEEecCCcEEEEecccCcccccccCCcceecC
Q 000673 190 CTLVIVDTYGL----TIVQTVFHGNLSIGPWKFMDVVSLGEDMGKHYGLMVDSVGRLQLVPISKESHLDREEGNGLCKSS 265 (1358)
Q Consensus 190 ~~I~i~D~~tl----~v~~~l~s~~~~~~pi~~l~v~~~~~d~~~~~~lla~s~dg~vkvW~l~~~~~~~~~~~~l~e~~ 265 (1358)
+.|.+++.... .-+..+.. ....+||.+++... +.+++ +.++.+.++++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~~-------~~lv~--~~g~~l~v~~l~~~~------------- 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSFN-------GRLVV--AVGNKLYVYDLDNSK------------- 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEET-------TEEEE--EETTEEEEEEEETTS-------------
T ss_pred cEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhhC-------CEEEE--eecCEEEEEEccCcc-------------
Confidence 88999998773 12222221 11356788888773 33333 345888899998741
Q ss_pred CcccceEeccCcccCceEEEEecCCcEEEEEecCce--EEeecCCCcccceeeeeecceeeecCCCCCceEEEEeecccc
Q 000673 266 SQLDMAILQNGVVEGGHLVSVATCGNIIALVLKDHC--IFRLLGSGSTIGEICFVDNLFCLEGGSTNSYVIGAMFLERVV 343 (1358)
Q Consensus 266 ~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~~~~~--i~d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~fl~~~d 343 (1358)
.+.....+......+++...+++++.+-..+. ++..-++. ..+ ..++.... ...+....|+.+++
T Consensus 119 ----~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~---~~l----~~va~d~~--~~~v~~~~~l~d~~ 185 (321)
T PF03178_consen 119 ----TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN---NKL----ILVARDYQ--PRWVTAAEFLVDED 185 (321)
T ss_dssp ----SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT---E-E----EEEEEESS---BEEEEEEEE-SSS
T ss_pred ----cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccC---CEE----EEEEecCC--CccEEEEEEecCCc
Confidence 11111222233366666666777776654444 44441211 112 12232222 34455566662223
Q ss_pred hhccccccccccccceEEEEEecCCcEEEEEEcc
Q 000673 344 AEKIENTMGVCTTFYENFAVWDNRGSAIVYAISY 377 (1358)
Q Consensus 344 ~~~~~~~~~~~~~~~~~v~vws~dG~~~l~~l~~ 377 (1358)
.+++.|.+|.+.+++.+.
T Consensus 186 ----------------~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 186 ----------------TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ----------------EEEEEETTSEEEEEEE-S
T ss_pred ----------------EEEEEcCCCeEEEEEECC
Confidence 799999999999999874
No 389
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=53.93 E-value=5.3e+02 Score=34.47 Aligned_cols=61 Identities=11% Similarity=0.039 Sum_probs=38.5
Q ss_pred CCcEEEEECCCCcEEEEecCCCCCc---------EEEEEcC-CCC---EEEEEecCCccccCCCCeEEEEECCCCeEEEE
Q 000673 648 DFSVALASLETLRVERMFPGHPNYP---------AKVVWDC-PRG---YIACLCRDHSRTSDAVDVLFIWDVKTGARERV 714 (1358)
Q Consensus 648 D~tV~lwdl~~~~~~~~l~gH~~~V---------~~v~~sp-d~~---~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~ 714 (1358)
.++|.-.|+++|+..-.++-....+ .-+.+.- +|+ .++ ..+++|.+++.|-+||+.+..
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~--------~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALV--------APTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEE--------EECCCCEEEEEECCCCCEEee
Confidence 4677888999999887765421111 1122222 442 444 334569999999999998865
Q ss_pred Ee
Q 000673 715 LR 716 (1358)
Q Consensus 715 l~ 716 (1358)
.+
T Consensus 485 ~~ 486 (764)
T TIGR03074 485 VE 486 (764)
T ss_pred ce
Confidence 43
No 390
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=52.88 E-value=2.2e+02 Score=37.98 Aligned_cols=124 Identities=12% Similarity=0.029 Sum_probs=74.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCCc--------EEEEEeCCC--CC--------CCCCCCeEEEEeCCCcEEE
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVAP--------VRQIILSPP--QT--------EHPWSDCFLSVGEDFSVAL 653 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~--------V~~l~~spd--~~--------~~~~g~~l~S~s~D~tV~l 653 (1358)
..+..++.++.|.-.|..+|+.+-++...... .+.+.+... .. ....+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 56777788889999999999988877543221 122333211 00 0012457888889999999
Q ss_pred EECCCCcEEEEecCCCCCc-------------EEEEEcC--CCCEEEEEecC--CccccCCCCeEEEEECCCCeEEEEEe
Q 000673 654 ASLETLRVERMFPGHPNYP-------------AKVVWDC--PRGYIACLCRD--HSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 654 wdl~~~~~~~~l~gH~~~V-------------~~v~~sp--d~~~L~~g~~d--~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
.|.++|+.+..|... +.| ..+.-.| .++.+++|+.- ..+...-+|.|+-+|.+||+++-.+.
T Consensus 275 LDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 999999998776421 111 0111112 24566665421 00000114899999999999987664
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=52.87 E-value=1.2e+02 Score=37.17 Aligned_cols=99 Identities=9% Similarity=0.067 Sum_probs=55.1
Q ss_pred CCcEEEEeCCCCcEEEEEecCC--CcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEEC-CCCc----EEEEecC-----
Q 000673 600 DCSIRIWDLGSGNLITVMHHHV--APVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL-ETLR----VERMFPG----- 667 (1358)
Q Consensus 600 D~tI~lWDl~sg~~l~~~~~H~--~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl-~~~~----~~~~l~g----- 667 (1358)
-.++.+||+.+.+.++++..-. ..+..|.|..+-. ...-|+.+.-..+|..|-- +.++ .+..++.
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~---~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPD---ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT-----EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCC---ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 4679999999999999987543 2356777765511 1345666666666666644 3332 2222221
Q ss_pred C------------CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 668 H------------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 668 H------------~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
- ..-|+.|..|.|++||.+.|-- +|.||-||+..
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~-------~GdvrqYDISD 343 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL-------HGDVRQYDISD 343 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETT-------TTEEEEEE-SS
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEccc-------CCcEEEEecCC
Confidence 1 2346899999999999986643 48999999965
No 392
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=50.92 E-value=73 Score=39.05 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=48.3
Q ss_pred CCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECC
Q 000673 639 SDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVK 707 (1358)
Q Consensus 639 g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~ 707 (1358)
..+++.+|.-|-|+|||--..+.-..+++-...|..|..+.+|+++++.|. ..+-+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk---------~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK---------NYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec---------ceEEEEecc
Confidence 468999999999999996555555667888888999999999999997764 467777764
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=50.78 E-value=3.4e+02 Score=30.50 Aligned_cols=91 Identities=10% Similarity=-0.020 Sum_probs=59.0
Q ss_pred EEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEE--CCCC-----cEEEEecC----CCCCcEEEEEcCCCCEEEEEecCCc
Q 000673 624 VRQIILSPPQTEHPWSDCFLSVGEDFSVALAS--LETL-----RVERMFPG----HPNYPAKVVWDCPRGYIACLCRDHS 692 (1358)
Q Consensus 624 V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwd--l~~~-----~~~~~l~g----H~~~V~~v~~spd~~~L~~g~~d~s 692 (1358)
-+.++|..+. ..+...-+.+.+|.-|| ..+| +.+..+.. ....+-.++...+|.+.+ ++.+
T Consensus 160 sNgl~Wd~d~-----K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~V-a~~n-- 231 (310)
T KOG4499|consen 160 SNGLAWDSDA-----KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYV-ATFN-- 231 (310)
T ss_pred CccccccccC-----cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEE-EEec--
Confidence 3567777662 23556667888998888 5555 33433332 112334556666666555 3332
Q ss_pred cccCCCCeEEEEECCCCeEEEEEeCCCCceEEEee
Q 000673 693 RTSDAVDVLFIWDVKTGARERVLRGTASHSMFDHF 727 (1358)
Q Consensus 693 gssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~~~~ 727 (1358)
.++|...|..||+.+.++.=.+.+++++.|
T Consensus 232 -----g~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 232 -----GGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred -----CcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 279999999999999999888888886644
No 394
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=49.60 E-value=47 Score=32.01 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcChhHHHHhHHHHHHHhhhhcCCCChHhHHhhHHHHHHHHHHHHhcc
Q 000673 1255 LVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVF 1313 (1358)
Q Consensus 1255 ~~~l~~l~~li~~~p~~~~~~l~~~~~~v~~~lDp~~~~~r~~~l~~~~~~l~~~v~~~ 1313 (1358)
..+|++|..+.-.-+..+..|++.++..||+|++=.+...|-.. -+.|+.++|.+
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~A----cEaL~ni~k~~ 58 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYA----CEALYNISKVA 58 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHH----HHHHHHHHHHH
Confidence 35677776666666777999999999999999999999777644 44444544443
No 395
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=49.42 E-value=2.4e+02 Score=35.94 Aligned_cols=60 Identities=12% Similarity=-0.054 Sum_probs=37.2
Q ss_pred CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeC
Q 000673 649 FSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRG 717 (1358)
Q Consensus 649 ~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~G 717 (1358)
+.+.-+|+.+|+.+-..+............ .+..++. .+.||.++.+|.+||+.+-.++-
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t-~g~lvf~--------g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT-AGDLVFY--------GTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE-CCcEEEE--------ECCCCeEEEEECCCCCEeEEEeC
Confidence 567888999998876665322111121111 3344442 22359999999999999877653
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=48.69 E-value=2.3e+02 Score=31.84 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=65.8
Q ss_pred CEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEe--CCCCcEE-----EEEecCCCcEEEEEeCCCCC-CCCCCCeEE
Q 000673 572 AVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWD--LGSGNLI-----TVMHHHVAPVRQIILSPPQT-EHPWSDCFL 643 (1358)
Q Consensus 572 ~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWD--l~sg~~l-----~~~~~H~~~V~~l~~spd~~-~~~~g~~l~ 643 (1358)
--+.|+|. .| .+.+-..-+.+.+|.-|| ..+|... ..++.. .+-. ..-||+. ....|.+++
T Consensus 159 IsNgl~Wd-----~d---~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~-~~~e--~~~PDGm~ID~eG~L~V 227 (310)
T KOG4499|consen 159 ISNGLAWD-----SD---AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS-QPFE--SLEPDGMTIDTEGNLYV 227 (310)
T ss_pred CCcccccc-----cc---CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC-CCcC--CCCCCcceEccCCcEEE
Confidence 33566775 22 246777888899998888 5565432 112110 0000 0012211 112378888
Q ss_pred EEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEEc-CCCCEEEEE
Q 000673 644 SVGEDFSVALASLETLRVERMFPGHPNYPAKVVWD-CPRGYIACL 687 (1358)
Q Consensus 644 S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~s-pd~~~L~~g 687 (1358)
++-.-++|...|+.+|+.+..+.-....|++++|- |+-..+++.
T Consensus 228 a~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 228 ATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred EEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 88888999999999999999887777899999995 334555543
No 397
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=48.46 E-value=4.4e+02 Score=31.97 Aligned_cols=177 Identities=12% Similarity=0.103 Sum_probs=82.7
Q ss_pred EEEeeccCcccCCE---EEEEEcCCcEEEEEecCcccCCCCCCccccCCceEEEEEecCCCC-EEEEEEeccccCCCCCc
Q 000673 514 SSMVISESFYAPYA---IVYGFFSGEIEVIQFDLFERHNSPGASLKVNSHVSRQYFLGHTGA-VLCLAAHRMVGTAKGWS 589 (1358)
Q Consensus 514 s~~~i~~~~~~p~~---lv~G~~dG~I~i~~~~~~~~~~~~~~~~d~~t~~~~~~l~gH~~~-V~~l~~sp~~~~~dg~~ 589 (1358)
...|..+.+|.+++ |+.+..||.-.++..+ +.+++..+ |..+.+. .....++ |++
T Consensus 34 h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lD-------------L~t~~i~Q-LTdg~g~~~~g~~~s-----~~~-- 92 (386)
T PF14583_consen 34 HRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLD-------------LATGEITQ-LTDGPGDNTFGGFLS-----PDD-- 92 (386)
T ss_dssp E---TTS--B-TTS-EEEEEE-TTSS-EEEEEE-------------TTT-EEEE----SS-B-TTT-EE------TTS--
T ss_pred cceeecCCCcCCCCCEEEEEeccCCCcceEEEE-------------cccCEEEE-CccCCCCCccceEEe-----cCC--
Confidence 33555556666553 4555556766554444 55555443 3322211 1123334 444
Q ss_pred cCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEe---C-------------------
Q 000673 590 FNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG---E------------------- 647 (1358)
Q Consensus 590 ~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s---~------------------- 647 (1358)
+.++--....+++--|+.+.+....+....+.+-...|..+. ++..++-.- .
T Consensus 93 --~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~----d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 93 --RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANS----DCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp --SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-T----TSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred --CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCC----CccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 555545556788888999988766676667766555554221 034433321 1
Q ss_pred CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCC-eEEEEECCC-CeEEEEEeCCCCce
Q 000673 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVD-VLFIWDVKT-GARERVLRGTASHS 722 (1358)
Q Consensus 648 D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~Dg-tV~vWd~~t-g~~~~~l~GH~~~v 722 (1358)
...|.-.|+++|+....+.. ..++..+.|+|.+..++.=|-- |-.+ . .-|||-+++ |.-.+.+.-|....
T Consensus 167 ~~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHE--Gpw~--~Vd~RiW~i~~dg~~~~~v~~~~~~e 238 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHE--GPWD--LVDQRIWTINTDGSNVKKVHRRMEGE 238 (386)
T ss_dssp -EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE---S-TT--TSS-SEEEEETTS---EESS---TTE
T ss_pred CceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEecc--CCcc--eeceEEEEEEcCCCcceeeecCCCCc
Confidence 13356667888876555553 3478899999998888876654 4444 3 247887765 55555555554333
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=48.09 E-value=2.6e+02 Score=34.36 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=30.3
Q ss_pred CCeEEEEECCCCceEEEeeCCCCCCCCceeeeeC-CCCCceEEEEee
Q 000673 111 DGVLCVWSRSSGHCRRRRKLPPWVGSPSVICTLP-SNPRYVCIGCCF 156 (1358)
Q Consensus 111 Dg~l~lWdl~~G~c~~~~~l~~~~~~~s~i~~~~-~~~~~~~l~c~~ 156 (1358)
-.+|.+||+.+.+.++++.+..--..|-.|++++ ++..+..++|..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aL 267 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCAL 267 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE-
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEec
Confidence 5689999999999999998862112466788877 455677888886
No 399
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=46.19 E-value=6.6e+02 Score=30.99 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCccceeEeee--CcCcCEEEeeeccc
Q 000673 28 PPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLC--GHSAPIADLSICYP 74 (1358)
Q Consensus 28 g~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~--GH~~~Vt~l~~~~~ 74 (1358)
...|+.|+.+|.++|++... ...++-.++. -=..||-.|....+
T Consensus 37 ~d~IivGS~~G~LrIy~P~~---~~~~~~~lllE~~l~~PILqv~~G~F 82 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSG---NEFQPEDLLLETQLKDPILQVECGKF 82 (418)
T ss_pred ccEEEEeccccEEEEEccCC---CCCCCccEEEEEecCCcEEEEEeccc
Confidence 36899999999999999974 2334334443 33589999977655
No 400
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=46.12 E-value=5e+02 Score=29.59 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=57.7
Q ss_pred CCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCC---CcEEEEE--------ecCCCcEEEEEeCCCCCCCC
Q 000673 569 HTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGS---GNLITVM--------HHHVAPVRQIILSPPQTEHP 637 (1358)
Q Consensus 569 H~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~s---g~~l~~~--------~~H~~~V~~l~~spd~~~~~ 637 (1358)
+...+-.|+|. +.+ +.|+.+-.....+++.+.. ...+... ..+..-+.++.++|..
T Consensus 116 ~N~G~EGla~D-----~~~----~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t---- 182 (248)
T PF06977_consen 116 GNKGFEGLAYD-----PKT----NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRT---- 182 (248)
T ss_dssp -SS--EEEEEE-----TTT----TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTT----
T ss_pred CCcceEEEEEc-----CCC----CEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCC----
Confidence 55679999998 333 5555666776667776643 2222211 1133457889999873
Q ss_pred CCCeEEEEeCCCcEEEEECCCCcEEEEecCCC---------CCcEEEEEcCCCCEEEE
Q 000673 638 WSDCFLSVGEDFSVALASLETLRVERMFPGHP---------NYPAKVVWDCPRGYIAC 686 (1358)
Q Consensus 638 ~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~---------~~V~~v~~spd~~~L~~ 686 (1358)
+++++-...++.+..+| .+|+++..+.-.. ...-.|+|.++|++.++
T Consensus 183 -~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 183 -GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp -TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred -CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence 67888888899999999 6677765543211 25679999999987774
No 401
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.55 E-value=5.2e+02 Score=35.33 Aligned_cols=168 Identities=14% Similarity=0.199 Sum_probs=96.7
Q ss_pred HHHHHHHhhcCCCcChhHHHHHHHHHHHHH-hcCCCcchHHHHHHHHHhhHhhhccccc---cchhHhHHhHHhhhhhcc
Q 000673 1124 IVAAALAIWYPSLVKPTLAMLVVQPLIKLV-MATNEKYSSTAAELLAEGMESTWKTCIG---FEIPRLIGDIFFQIECVS 1199 (1358)
Q Consensus 1124 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~~~~~aiel~~~g~~~~w~~~~~---~~~~~~l~~~~~~~~~~~ 1199 (1358)
|++=-+...+..-++....-.+=.+|+..+ +.+...+|..=.|++++ +-+.-+| .|++.+|+ .|+.
T Consensus 59 Vl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAe----ia~~~l~e~WPell~~L~------q~~~ 128 (1075)
T KOG2171|consen 59 VLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAE----IARNDLPEKWPELLQFLF------QSTK 128 (1075)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH----HHHhccccchHHHHHHHH------HHhc
Confidence 344445555666666665555555555554 54555677666666662 3344444 57777777 3555
Q ss_pred CCCCCcCCCCCCchhHHHHHHhhhcccchhccChh---HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhcCh------h
Q 000673 1200 NSSANLAGQHPAVPASIRETLVGILLPSLAMADIL---GFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSP------R 1270 (1358)
Q Consensus 1200 ~~~~~~~~~~~~~~~~~~~a~~~~~l~~ia~~~~~---~f~~~~~~~i~~~~~~~~~~~~~l~~l~~li~~~p------~ 1270 (1358)
+ ++.....+|-.-| -++.-.+...+.+ .|.-.+..-+ +.+++++...++..+..++.-.+ .
T Consensus 129 S-------~~~~~rE~al~il-~s~~~~~~~~~~~~~~~l~~lf~q~~--~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~ 198 (1075)
T KOG2171|consen 129 S-------PNPSLRESALLIL-SSLPETFGNTLQPHLDDLLRLFSQTM--TDPSSPVRVAAVRALGAFAEYLENNKSEVD 198 (1075)
T ss_pred C-------CCcchhHHHHHHH-HhhhhhhccccchhHHHHHHHHHHhc--cCCcchHHHHHHHHHHHHHHHhccchHHHH
Confidence 4 2333333333222 1111223333443 3444444445 45566677777777666554443 2
Q ss_pred HHHHhHHHHHHHhhhhcCCCChHhHHhhHHHHHHHHHHHHhccce
Q 000673 1271 NVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHVFPM 1315 (1358)
Q Consensus 1271 ~~~~~l~~~~~~v~~~lDp~~~~~r~~~l~~~~~~l~~~v~~~p~ 1315 (1358)
.+.+.||.++.+.-.+++=.+. ..++.+..+|.|+....|-
T Consensus 199 ~~~~llP~~l~vl~~~i~~~d~----~~a~~~l~~l~El~e~~pk 239 (1075)
T KOG2171|consen 199 KFRDLLPSLLNVLQEVIQDGDD----DAAKSALEALIELLESEPK 239 (1075)
T ss_pred HHHHHhHHHHHHhHhhhhccch----HHHHHHHHHHHHHHhhchH
Confidence 5677899999888888886655 3467888888888888884
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.42 E-value=1.7e+02 Score=36.44 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=46.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEE-EEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECC
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLI-TVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLE 657 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l-~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~ 657 (1358)
-++|.||.+|.||+||- .+... ..|.+-..+|..|..+-+ |+++++.+ +..+.|-++.
T Consensus 442 G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtad------GKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 442 GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTAD------GKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeecc------CcEEEEec-ccEEEEEEEe
Confidence 59999999999999997 55544 347888999999999999 88776665 4567777754
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.36 E-value=3.2e+02 Score=36.14 Aligned_cols=71 Identities=25% Similarity=0.298 Sum_probs=46.8
Q ss_pred cEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEEC-CC---------CcE---EEEe--------cCCCCCcEEEEEcCC-
Q 000673 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALASL-ET---------LRV---ERMF--------PGHPNYPAKVVWDCP- 680 (1358)
Q Consensus 623 ~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl-~~---------~~~---~~~l--------~gH~~~V~~v~~spd- 680 (1358)
.|..|.++|+ |..++-.|..+ |.|..+ +. |+. .+++ ..+...|..+.|||.
T Consensus 86 ~v~~i~~n~~------g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 86 EVHQISLNPT------GSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eEEEEEECCC------CCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 5888999998 88888888765 444443 21 111 1222 123456889999996
Q ss_pred --CCEEEEEecCCccccCCCCeEEEEECCC
Q 000673 681 --RGYIACLCRDHSRTSDAVDVLFIWDVKT 708 (1358)
Q Consensus 681 --~~~L~~g~~d~sgssD~DgtV~vWd~~t 708 (1358)
+..|++- ++| +++|+||+..
T Consensus 159 ~~~~~l~vL------tsd--n~lR~y~~~~ 180 (717)
T PF10168_consen 159 ESDSHLVVL------TSD--NTLRLYDISD 180 (717)
T ss_pred CCCCeEEEE------ecC--CEEEEEecCC
Confidence 4677754 344 8999999965
No 404
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=44.17 E-value=51 Score=39.48 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=41.4
Q ss_pred CCcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCeEEE
Q 000673 648 DFSVALASLETLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGARER 713 (1358)
Q Consensus 648 D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~ 713 (1358)
.+...++|+++++....... ...+....|+|+|++++... ++.|++++..+++..+
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~---------~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR---------DNNLYLRDLATGQETQ 77 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE---------TTEEEEESSTTSEEEE
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe---------cCceEEEECCCCCeEE
Confidence 46788999999876554443 45788999999999998532 3799999998885443
No 405
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=43.58 E-value=2.9e+02 Score=32.58 Aligned_cols=101 Identities=10% Similarity=0.106 Sum_probs=63.5
Q ss_pred CCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEE-eCCCcEEEEECCC--C----c-EEEEecCCCCCcEEEEEcCCC
Q 000673 610 SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSV-GEDFSVALASLET--L----R-VERMFPGHPNYPAKVVWDCPR 681 (1358)
Q Consensus 610 sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~-s~D~tV~lwdl~~--~----~-~~~~l~gH~~~V~~v~~spd~ 681 (1358)
.+...+.+..|-..-+.|+|||| ++.+..+ +..+.|.-+++.. + + ....+..+.+.+-.++...+|
T Consensus 151 ~g~~~~l~~~~~~~~NGla~SpD------g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG 224 (307)
T COG3386 151 DGGVVRLLDDDLTIPNGLAFSPD------GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG 224 (307)
T ss_pred CCCEEEeecCcEEecCceEECCC------CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence 35555555555556678999999 6655544 4557788777652 1 1 122233344566677888888
Q ss_pred CEEEEEecCCccccCCCCeEEEEECCCCeEEEEEeCCCCceEE
Q 000673 682 GYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLRGTASHSMF 724 (1358)
Q Consensus 682 ~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~GH~~~v~~ 724 (1358)
.+-+++. .+ -+.|.+|+.+ |+++..+.-....+..
T Consensus 225 ~lw~~a~------~~-g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 225 NLWVAAV------WG-GGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred CEEEecc------cC-CceEEEECCC-CcEEEEEECCCCCCcc
Confidence 8775321 11 1389999998 9999988877545543
No 406
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=43.04 E-value=3.2e+02 Score=34.74 Aligned_cols=122 Identities=10% Similarity=-0.066 Sum_probs=70.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCC-cEE---EEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecC
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHHHVA-PVR---QIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG 667 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~-~V~---~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~g 667 (1358)
..++.++.++.|.-.|..+|+.+-++..... .+. +..+...+ ..-.+..++.++.|+.+.-.|.++|+.+-.+..
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg-~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG-VALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCccccccccccccccc-ceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 4667777788899999999998877653211 111 11000000 001135677788899999999999999866542
Q ss_pred CCCC-cEEEEEcC--CCCEEEEEecCCccccCCCCeEEEEECCCCeEEEEEe
Q 000673 668 HPNY-PAKVVWDC--PRGYIACLCRDHSRTSDAVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 668 H~~~-V~~v~~sp--d~~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~~~l~ 716 (1358)
.... -..+.-.| .+..++++... +-...+|.|+-+|.+||+.+-.+.
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~--~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISG--GEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecc--cccCCCcEEEEEECCCCceeEecc
Confidence 1100 00111112 13345544321 001124899999999999876654
No 407
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=42.88 E-value=3.4e+02 Score=31.55 Aligned_cols=99 Identities=8% Similarity=0.069 Sum_probs=61.2
Q ss_pred CCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEe------CCCcEEEEECCCCcEEEEecC-----C
Q 000673 600 DCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVG------EDFSVALASLETLRVERMFPG-----H 668 (1358)
Q Consensus 600 D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s------~D~tV~lwdl~~~~~~~~l~g-----H 668 (1358)
-..|++||..+.+-..--.+-.+.|+++.|..+ .+.++.|. ....+..||+.+..- ..+.+ -
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~------~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~i 87 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASN------NQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSI 87 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecC------CEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccC
Confidence 346899998877655544455688999999855 46777764 466788999887643 33433 1
Q ss_pred CCCcEEEEEcC-CCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 669 PNYPAKVVWDC-PRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 669 ~~~V~~v~~sp-d~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
.++|..+.+.. |+.-+.+++. +.+.+..|..||-.+.
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~----~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGR----SANGSTFLMKYDGSSW 125 (281)
T ss_pred CCcEEEEEeeccCCceEEEece----ecCCCceEEEEcCCce
Confidence 35677777732 3333443332 1333356777765443
No 408
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.63 E-value=1.7e+02 Score=37.73 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=86.3
Q ss_pred CcChhHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhhHhhhccccccchhHhHHhHHhhhhhccCCCCCcCCCCCCchhH
Q 000673 1136 LVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPAS 1215 (1358)
Q Consensus 1136 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~aiel~~~g~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1215 (1358)
-+.|+|||++|.-+.-||.....-+|--||-|+=|=| -.| .|-+|..|.=+-. . ...+++.+-++
T Consensus 136 fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvF----LkY--PeAlr~~FprL~E-----k----LeDpDp~V~SA 200 (877)
T KOG1059|consen 136 IVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVF----LKY--PEALRPCFPRLVE-----K----LEDPDPSVVSA 200 (877)
T ss_pred ccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHH----Hhh--hHhHhhhHHHHHH-----h----ccCCCchHHHH
Confidence 3789999999999999997555556888988886544 466 5677766632211 1 23345555555
Q ss_pred HHHHHhhhcccchhccChhHHHHHHHHHHhh--cCCCChHHHHHHHHHHH-HHhcChhHHHHhHHHHHHHhhhhcCCCCh
Q 000673 1216 IRETLVGILLPSLAMADILGFLTVVESQIWS--TASDSPVHLVSIMTIIR-VVRGSPRNVAQHLDKVVNFILQTMDPGNS 1292 (1358)
Q Consensus 1216 ~~~a~~~~~l~~ia~~~~~~f~~~~~~~i~~--~~~~~~~~~~~l~~l~~-li~~~p~~~~~~l~~~~~~v~~~lDp~~~ 1292 (1358)
|-.-+ ..+|+.||.-|++- +-.... +.++..-..+.++.|.. |.--.|.+-...++.+-+++
T Consensus 201 AV~VI-----CELArKnPknyL~L-AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li--------- 265 (877)
T KOG1059|consen 201 AVSVI-----CELARKNPQNYLQL-APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELM--------- 265 (877)
T ss_pred HHHHH-----HHHHhhCCcccccc-cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHH---------
Confidence 55544 78999999766542 222111 12222222233333333 66667777766777666665
Q ss_pred HhHHhhHHHHHHHHHHHHhccc
Q 000673 1293 VMRKTCLHTSMAALKEIVHVFP 1314 (1358)
Q Consensus 1293 ~~r~~~l~~~~~~l~~~v~~~p 1314 (1358)
+. ..||.+|+|=|.+-=
T Consensus 266 --~s---T~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 266 --ES---TVAMSLLYECVNTVV 282 (877)
T ss_pred --Hh---hHHHHHHHHHHHHhe
Confidence 11 356777777665543
No 409
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=42.26 E-value=5.5e+02 Score=29.00 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=34.8
Q ss_pred cEEEEEeCCCcEEEEeCCCC-----cEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcE
Q 000673 592 EVLVSGSMDCSIRIWDLGSG-----NLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRV 661 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg-----~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~ 661 (1358)
..|+. ...++|.+|..... +..+.+.. .+.+.++.|.++ .++.|..+ ...+.|++++..
T Consensus 106 ~~L~v-a~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~~--------~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 106 RRLCV-AVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLGN--------KICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred eEEEE-EECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeCC--------EEEEEeCC-ceEEEecCCCCc
Confidence 34444 44558888877542 45555544 367888888743 45555433 366677765543
No 410
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=38.62 E-value=1.9e+02 Score=37.95 Aligned_cols=133 Identities=14% Similarity=0.188 Sum_probs=83.6
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHhhHhhhccccccchhHhHHhHHhhhhhccCCCCCcCCCCCCchhHHHHHHhhhcccc
Q 000673 1148 PLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPS 1227 (1358)
Q Consensus 1148 ~l~~ll~~~~~~~~~~aiel~~~g~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 1227 (1358)
.|+.+|..+......-+-.++-+-|-+.=+ ..++.-|.|.++++. + ..+.+-|
T Consensus 8 ~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~y~~~t~---s-------------~~~~~il------- 60 (668)
T PF04388_consen 8 ELLSLLESNDLSVLEEIKALLQELLNSDRE----PWLVNGLVDYYLSTN---S-------------QRALEIL------- 60 (668)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhccch----HHHHHHHHHHHhhcC---c-------------HHHHHHH-------
Confidence 355556544444444443344433321111 136777887776653 1 1112222
Q ss_pred hhccCh--hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhcChhHHHHhHH-HHHHHhhhhcCCCChHhHHhhHHHHHH
Q 000673 1228 LAMADI--LGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQHLD-KVVNFILQTMDPGNSVMRKTCLHTSMA 1304 (1358)
Q Consensus 1228 ia~~~~--~~f~~~~~~~i~~~~~~~~~~~~~l~~l~~li~~~p~~~~~~l~-~~~~~v~~~lDp~~~~~r~~~l~~~~~ 1304 (1358)
+.-.+| ..|+..|...+ .++.... .+|..|..+|++.|..++..+. .++.-+|||| +.+......+.
T Consensus 61 ~~~~~P~~K~~~~~l~~~~--~~~~~Rl--~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L------~~D~~~~~~~~ 130 (668)
T PF04388_consen 61 VGVQEPHDKHLFDKLNDYF--VKPSYRL--QALTLLGHFVRSQPPWLYKILQTPLFKSLLKCL------QFDTSITVVSS 130 (668)
T ss_pred HhcCCccHHHHHHHHHHHH--cCchhHH--HHHHHHHHHHhcCCchHHHHhcChhHHHHHHHH------hhcccHHHHHH
Confidence 566888 99999999988 3443333 4555555699999999998877 7888999999 35555666677
Q ss_pred HHHHHHhccceee
Q 000673 1305 ALKEIVHVFPMVS 1317 (1358)
Q Consensus 1305 ~l~~~v~~~p~v~ 1317 (1358)
+|.-|+--.|+|.
T Consensus 131 al~~LimlLP~ip 143 (668)
T PF04388_consen 131 ALLVLIMLLPHIP 143 (668)
T ss_pred HHHHHHHHhcccc
Confidence 7777777888875
No 411
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=38.04 E-value=76 Score=24.48 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=19.5
Q ss_pred CceeEEEEEecCCCEEE-EEeCC--CcEEEE
Q 000673 16 SHRVTATSALTQPPTLY-TGGSD--GSILWW 43 (1358)
Q Consensus 16 ~h~Vtava~Spdg~~La-TGs~D--G~I~lW 43 (1358)
.......++||||+.|+ +...+ |.--||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34677899999998877 45556 666666
No 412
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=37.68 E-value=92 Score=37.25 Aligned_cols=79 Identities=13% Similarity=0.236 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHH-HHhcChhHHHHhHHHHHHHhhhhc-----CC-----CChHhHHhhHHHH
Q 000673 1234 LGFLTVVESQIWSTASDSPVHLVSIMTIIR-VVRGSPRNVAQHLDKVVNFILQTM-----DP-----GNSVMRKTCLHTS 1302 (1358)
Q Consensus 1234 ~~f~~~~~~~i~~~~~~~~~~~~~l~~l~~-li~~~p~~~~~~l~~~~~~v~~~l-----Dp-----~~~~~r~~~l~~~ 1302 (1358)
|-|+..|+.++.....+.-.....+|.+++ |+.+.-..+.+||..+|-+||.|| ++ ++-.+|+ .|
T Consensus 213 Pyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd----~A 288 (343)
T cd08050 213 PYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRD----YA 288 (343)
T ss_pred hHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHH----HH
Confidence 689999999996333224455677888888 888888899999999999999887 33 3345665 45
Q ss_pred HHHHHHHHhcccee
Q 000673 1303 MAALKEIVHVFPMV 1316 (1358)
Q Consensus 1303 ~~~l~~~v~~~p~v 1316 (1358)
-.+|..++++|...
T Consensus 289 A~ll~~i~~~f~~~ 302 (343)
T cd08050 289 ARLLAQICRKFSTS 302 (343)
T ss_pred HHHHHHHHHHcCCC
Confidence 66777777777654
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=37.66 E-value=70 Score=26.08 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=25.3
Q ss_pred eeEEEEEecCCC---EEEEEeCCCcEEEEEccC
Q 000673 18 RVTATSALTQPP---TLYTGGSDGSILWWSFSD 47 (1358)
Q Consensus 18 ~Vtava~Spdg~---~LaTGs~DG~I~lWdl~~ 47 (1358)
-|.++.|||++. +|+-.-.-|.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999998654 888887889999999994
No 414
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.46 E-value=3.7e+02 Score=33.56 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=47.1
Q ss_pred cEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEE---------CCCCcEE---EEec-------CC-CCCcEEEEEcCCC-
Q 000673 623 PVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS---------LETLRVE---RMFP-------GH-PNYPAKVVWDCPR- 681 (1358)
Q Consensus 623 ~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwd---------l~~~~~~---~~l~-------gH-~~~V~~v~~spd~- 681 (1358)
.|..+..++. |..++-.+.||.+.++- +++|+.. +++. .. .-.+..++|||+.
T Consensus 105 eV~~vl~s~~------GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 105 EVYQVLLSPT------GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSI 178 (741)
T ss_pred EEEEEEecCC------CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCcc
Confidence 3667777777 88888888898776543 2345432 2221 11 1135688999975
Q ss_pred --CEEEEEecCCccccCCCCeEEEEECCCCeEE
Q 000673 682 --GYIACLCRDHSRTSDAVDVLFIWDVKTGARE 712 (1358)
Q Consensus 682 --~~L~~g~~d~sgssD~DgtV~vWd~~tg~~~ 712 (1358)
..|.+- ++| ++||+||...-+.+
T Consensus 179 ~D~hL~iL------~sd--nviRiy~lS~~tel 203 (741)
T KOG4460|consen 179 LDPHLVLL------TSD--NVIRIYSLSEPTEL 203 (741)
T ss_pred CCceEEEE------ecC--cEEEEEecCCcchh
Confidence 344432 344 89999999765444
No 415
>PRK10115 protease 2; Provisional
Probab=37.39 E-value=9e+02 Score=31.94 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=64.3
Q ss_pred EEEEEEeccccCCCCCccCcEEEE-----EeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC
Q 000673 573 VLCLAAHRMVGTAKGWSFNEVLVS-----GSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1358)
Q Consensus 573 V~~l~~sp~~~~~dg~~~~~~L~S-----gs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~ 647 (1358)
+..+.++ ||| ++|+- |+...++++-|+.+|+.+..-.... -..+.|.+| ++.|+-...
T Consensus 129 l~~~~~S-----pdg----~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D------~~~~~y~~~ 191 (686)
T PRK10115 129 LGGMAIT-----PDN----TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAND------SWTFYYVRK 191 (686)
T ss_pred EeEEEEC-----CCC----CEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeC------CCEEEEEEe
Confidence 4445565 777 55543 2333368899998887432221111 146899998 564444332
Q ss_pred -C-----CcEEEEECCCC--cEEEEecCCCCCcE-EEEEcCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 648 -D-----FSVALASLETL--RVERMFPGHPNYPA-KVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 648 -D-----~tV~lwdl~~~--~~~~~l~gH~~~V~-~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
+ ..|.++++.++ +-...+........ .+..+.++++++..+.+ ..++.+.+|+.
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~-----~~~~~~~l~~~ 254 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS-----ATTSEVLLLDA 254 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC-----CccccEEEEEC
Confidence 2 46888899887 33444443333333 33334488888765432 22468899984
No 416
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=37.32 E-value=1.1e+02 Score=23.76 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=27.0
Q ss_pred CC-eEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE
Q 000673 639 SD-CFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW 677 (1358)
Q Consensus 639 g~-~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~ 677 (1358)
++ .+++.-.+++|.++|+.+++.+..+.. ...+..++|
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 55 445555689999999999998887765 334555555
No 417
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.79 E-value=5.5e+02 Score=29.80 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=60.6
Q ss_pred EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCC-----CcEEEEeCCCC-cEEEEEecCCCcEEEEEeCCCCCCCC
Q 000673 564 QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMD-----CSIRIWDLGSG-NLITVMHHHVAPVRQIILSPPQTEHP 637 (1358)
Q Consensus 564 ~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D-----~tI~lWDl~sg-~~l~~~~~H~~~V~~l~~spd~~~~~ 637 (1358)
+.|.||. .|| ||| .+|...-.| |.|-+||.+.+ +.+..|..|.-.-..+.+.+|
T Consensus 113 RHfyGHG------vfs-----~dG----~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D----- 172 (366)
T COG3490 113 RHFYGHG------VFS-----PDG----RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD----- 172 (366)
T ss_pred ceeeccc------ccC-----CCC----cEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC-----
Confidence 4567774 266 788 777665544 46889998744 345668888777788888888
Q ss_pred CCCeEEEEeC------------------CCcEEEEECCCCcEEE--Eec--CCCCCcEEEEEcCCCCE
Q 000673 638 WSDCFLSVGE------------------DFSVALASLETLRVER--MFP--GHPNYPAKVVWDCPRGY 683 (1358)
Q Consensus 638 ~g~~l~S~s~------------------D~tV~lwdl~~~~~~~--~l~--gH~~~V~~v~~spd~~~ 683 (1358)
|+.++.+.. .-++.+.|..+|..+. +++ -+...+..++..+||..
T Consensus 173 -GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv 239 (366)
T COG3490 173 -GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV 239 (366)
T ss_pred -CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcE
Confidence 777766543 2345555655554432 222 23334556666555543
No 418
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.90 E-value=4.1e+02 Score=30.79 Aligned_cols=86 Identities=17% Similarity=0.057 Sum_probs=51.4
Q ss_pred CCceEEEEeCCCceEEEEEEecccccCC-cceEEEeecCCCCCcceEEEEecCC-----cEEEEecccCcccccccCCcc
Q 000673 188 PKCTLVIVDTYGLTIVQTVFHGNLSIGP-WKFMDVVSLGEDMGKHYGLMVDSVG-----RLQLVPISKESHLDREEGNGL 261 (1358)
Q Consensus 188 ~~~~I~i~D~~tl~v~~~l~s~~~~~~p-i~~l~v~~~~~d~~~~~~lla~s~d-----g~vkvW~l~~~~~~~~~~~~l 261 (1358)
+..-..++|+.+.+...++.+ ..+. ...-.++++ |++ +|-+.-.| |++-|+|...
T Consensus 89 PGtf~~vfD~~~~~~pv~~~s---~~~RHfyGHGvfs~--dG~---~LYATEndfd~~rGViGvYd~r~----------- 149 (366)
T COG3490 89 PGTFAMVFDPNGAQEPVTLVS---QEGRHFYGHGVFSP--DGR---LLYATENDFDPNRGVIGVYDARE----------- 149 (366)
T ss_pred CCceEEEECCCCCcCcEEEec---ccCceeecccccCC--CCc---EEEeecCCCCCCCceEEEEeccc-----------
Confidence 445567888888777766665 3222 122233334 544 55554333 6777777664
Q ss_pred eecCCcccceEeccCcccCceEEEEecCCcEEEEEe
Q 000673 262 CKSSSQLDMAILQNGVVEGGHLVSVATCGNIIALVL 297 (1358)
Q Consensus 262 ~e~~~~~~~~~~~~~~~~~v~~vs~s~dg~~~~~~~ 297 (1358)
....+.....|.=+...|.+.+||+.++.+.
T Consensus 150 -----~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 150 -----GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred -----ccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 2333444555656678999999998887664
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=33.82 E-value=7.2e+02 Score=28.23 Aligned_cols=114 Identities=12% Similarity=0.041 Sum_probs=64.8
Q ss_pred CEEEEEEeccccCCCCCccCcEEEEEe-CCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCc
Q 000673 572 AVLCLAAHRMVGTAKGWSFNEVLVSGS-MDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFS 650 (1358)
Q Consensus 572 ~V~~l~~sp~~~~~dg~~~~~~L~Sgs-~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~t 650 (1358)
.+...+++ +|| +.++.-. .++.-.+|-...+....... -...+..-.|.++ +........+..
T Consensus 25 ~~~s~AvS-----~dg----~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~------g~~W~v~~~~~~ 88 (253)
T PF10647_consen 25 DVTSPAVS-----PDG----SRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPD------GWVWTVDDGSGG 88 (253)
T ss_pred cccceEEC-----CCC----CeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCC------CCEEEEEcCCCc
Confidence 57777886 677 5444333 33333444333343333321 2236777888888 676766666777
Q ss_pred EEEEE-CCCCcEE-EEe--cCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 651 VALAS-LETLRVE-RMF--PGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 651 V~lwd-l~~~~~~-~~l--~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
.+++. ..+++.. ... ..-...|..+.++|||..++....+ +.++.|+|=-+
T Consensus 89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~-----~~~~~v~va~V 143 (253)
T PF10647_consen 89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVED-----GGGGRVYVAGV 143 (253)
T ss_pred eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEec-----CCCCeEEEEEE
Confidence 77773 3333322 112 1111279999999999998865432 22367777654
No 420
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.24 E-value=2.4e+02 Score=32.90 Aligned_cols=122 Identities=15% Similarity=0.227 Sum_probs=69.5
Q ss_pred HHHHHHHhcCCCcchHHHH----HHHHHhhHhhhccccccchhHhHHhHHhhhhhccCCCCCcCCCCCCchhHHHHHHhh
Q 000673 1147 QPLIKLVMATNEKYSSTAA----ELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVG 1222 (1358)
Q Consensus 1147 ~~l~~ll~~~~~~~~~~ai----el~~~g~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 1222 (1358)
.+|..+|++++.++|-+|+ -|.++|+ .+|..|= ...+.-++.++.... . ++.|-.||++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~-~~~~~~~-~~~lk~l~qL~~~~~-----~----------~~~a~~alVn 68 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGL-QSLSKYS-EALLKDLTQLLKDLD-----P----------AEPAATALVN 68 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccch-hhhccch-hhhHHHHHHHccCcc-----c----------ccHHHHHHHH
Confidence 3688999999999999999 6778899 5999983 234444443332221 0 1122234432
Q ss_pred hcccchhccC------hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhcChhHHHH--hH-----HHHHHHhhhhcCC
Q 000673 1223 ILLPSLAMAD------ILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQ--HL-----DKVVNFILQTMDP 1289 (1358)
Q Consensus 1223 ~~l~~ia~~~------~~~f~~~~~~~i~~~~~~~~~~~~~l~~l~~li~~~p~~~~~--~l-----~~~~~~v~~~lDp 1289 (1358)
++... ...|++.+-..+ +++.++.....-|.|..+-|..-....- .+ .-+|+.+.+-.|+
T Consensus 69 -----lsq~~~l~~~ll~~~~k~l~~~~--~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~ 141 (353)
T KOG2973|consen 69 -----LSQKEELRKKLLQDLLKVLMDML--TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDK 141 (353)
T ss_pred -----HHhhHHHHHHHHHHHHHHHHHHh--cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCc
Confidence 44333 112888888877 6777766444444443333222211110 11 4567778888888
Q ss_pred CCh
Q 000673 1290 GNS 1292 (1358)
Q Consensus 1290 ~~~ 1292 (1358)
.-.
T Consensus 142 ~~n 144 (353)
T KOG2973|consen 142 SYN 144 (353)
T ss_pred ccc
Confidence 755
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.08 E-value=2.8e+02 Score=36.59 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=55.8
Q ss_pred EeCCCCCCceeEEEEEecCCCEEEEEeCCCcEEEEEccCC--------CCCc-cceeEe-------eeCcCcCEEEeeec
Q 000673 9 IWSGTPPSHRVTATSALTQPPTLYTGGSDGSILWWSFSDS--------SYSE-IKPVAM-------LCGHSAPIADLSIC 72 (1358)
Q Consensus 9 lw~~~~p~h~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~--------~~~~-~~~~~~-------L~GH~~~Vt~l~~~ 72 (1358)
|-...||...|.-|.++|+|++||-.|..|-.. =.+-.. ++.. +.+... ...+...|..+.+-
T Consensus 77 L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V-~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~Wh 155 (717)
T PF10168_consen 77 LLPSNPPLFEVHQISLNPTGSLLALVGPRGVVV-LELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWH 155 (717)
T ss_pred eecCCCCceeEEEEEECCCCCEEEEEcCCcEEE-EEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEc
Confidence 444567888999999999999999887766544 334210 0111 111110 01233444445442
Q ss_pred cccccccCcccccccccccCcccccccCCCCeEEEeeCCCeEEEEECCCC
Q 000673 73 YPAMVSRDGKAEHWKAENSSNVMGKSSLDNGALISACTDGVLCVWSRSSG 122 (1358)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~L~S~s~Dg~l~lWdl~~G 122 (1358)
+. +.++..|+-=..|+++|++|+.+.
T Consensus 156 P~------------------------s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 156 PW------------------------SESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CC------------------------CCCCCeEEEEecCCEEEEEecCCC
Confidence 22 667889999999999999999754
No 422
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=33.08 E-value=3.5e+02 Score=32.77 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=70.9
Q ss_pred ccCCceEEEEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEE--EeCCCCcEEEEEecCC-CcEEEEEeCCC
Q 000673 556 KVNSHVSRQYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRI--WDLGSGNLITVMHHHV-APVRQIILSPP 632 (1358)
Q Consensus 556 d~~t~~~~~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~l--WDl~sg~~l~~~~~H~-~~V~~l~~spd 632 (1358)
|..||..+..|..+.+.-..+-|...--.+|| +++|+.+..|+.-.+ -|+.+++. .++..+. .......++|+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG---~kllF~s~~dg~~nly~lDL~t~~i-~QLTdg~g~~~~g~~~s~~ 91 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDG---RKLLFASDFDGNRNLYLLDLATGEI-TQLTDGPGDNTFGGFLSPD 91 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS----EEEEEE-TTSS-EEEEEETTT-EE-EE---SS-B-TTT-EE-TT
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCC---CEEEEEeccCCCcceEEEEcccCEE-EECccCCCCCccceEEecC
Confidence 56677777777655444444444311112566 456777777776554 47777764 3444432 22223556677
Q ss_pred CCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCCCCCcEEEEE--cCCCCEEEEEecCCccccC--------------
Q 000673 633 QTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGHPNYPAKVVW--DCPRGYIACLCRDHSRTSD-------------- 696 (1358)
Q Consensus 633 ~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH~~~V~~v~~--spd~~~L~~g~~d~sgssD-------------- 696 (1358)
++.++-....++++-.|+++.+....+.-...++-...| +.|+..+ +|+.- .-.|
T Consensus 92 ------~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~-~g~e~--~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 92 ------DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKL-VGIEI--SREDWKPLTKWKGFREFY 162 (386)
T ss_dssp ------SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEE-EEEEE--EGGG-----SHHHHHHHH
T ss_pred ------CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEE-EEEEE--eehhccCccccHHHHHHH
Confidence 677766767789999999998876666655556655666 3455554 34432 0111
Q ss_pred ---CCCeEEEEECCCCeEEEEEe
Q 000673 697 ---AVDVLFIWDVKTGARERVLR 716 (1358)
Q Consensus 697 ---~DgtV~vWd~~tg~~~~~l~ 716 (1358)
-.+.|.--|+++|+....+.
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEE
T ss_pred hhCCCceEEEEECCCCceeEEEe
Confidence 12567777999998766655
No 423
>PHA02713 hypothetical protein; Provisional
Probab=32.94 E-value=2.9e+02 Score=35.43 Aligned_cols=75 Identities=7% Similarity=0.015 Sum_probs=44.5
Q ss_pred CCeEEEEeCC------CcEEEEECCC-Cc--EEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 639 SDCFLSVGED------FSVALASLET-LR--VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 639 g~~l~S~s~D------~tV~lwdl~~-~~--~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
|+..+.|+.+ .++..||.++ .+ .+..++........+.+ ++...++|+.+ + ..++..||..|.
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~--~----~~~~e~yd~~~~ 535 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYE--S----YMLQDTFNVYTY 535 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeec--c----eeehhhcCcccc
Confidence 5666667654 2467899887 33 33444433323333333 56777776654 1 137889999988
Q ss_pred eEEEEEeCCCCc
Q 000673 710 ARERVLRGTASH 721 (1358)
Q Consensus 710 ~~~~~l~GH~~~ 721 (1358)
+-...-..|+..
T Consensus 536 ~W~~~~~~~~~~ 547 (557)
T PHA02713 536 EWNHICHQHSNS 547 (557)
T ss_pred cccchhhhcCCc
Confidence 766665666543
No 424
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=32.89 E-value=3.7e+02 Score=29.91 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=62.1
Q ss_pred EEEEeCCCcEEEEeCC--CCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCC------CcEEEE---ECC--CCc
Q 000673 594 LVSGSMDCSIRIWDLG--SGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED------FSVALA---SLE--TLR 660 (1358)
Q Consensus 594 L~Sgs~D~tI~lWDl~--sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D------~tV~lw---dl~--~~~ 660 (1358)
|+.+...++|.+|++. ..+.+.+|..- +.|..+.++.. |+++++--.+ ..+|+| ... ..+
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~------GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEA------GDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccc------cceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 3333556789999998 34566777654 88999999988 8999996432 255654 322 112
Q ss_pred EEE-EecCC---------------------CCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCC
Q 000673 661 VER-MFPGH---------------------PNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTG 709 (1358)
Q Consensus 661 ~~~-~l~gH---------------------~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg 709 (1358)
+++ .+.|| ...+.+++-.|...-|++||. +++.+|.+..+
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~---------~~l~lf~l~~~ 165 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG---------NKLVLFTLKYQ 165 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC---------CEEEEEEEEEE
Confidence 221 22232 224667777775555555542 59999988654
No 425
>PHA02663 hypothetical protein; Provisional
Probab=32.71 E-value=36 Score=33.61 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCcch-HHHHHHHHHhhHhhh---ccccc-cchhHhHHh
Q 000673 1148 PLIKLVMATNEKYS-STAAELLAEGMESTW---KTCIG-FEIPRLIGD 1190 (1358)
Q Consensus 1148 ~l~~ll~~~~~~~~-~~aiel~~~g~~~~w---~~~~~-~~~~~~l~~ 1190 (1358)
.+--||.+|.+|-| .+|||||+.== ..| .+++| |-+++.|+|
T Consensus 74 lvsalleaptspgrmvtavelcaqmg-r~wtr~~q~~~fmrlv~vl~d 120 (172)
T PHA02663 74 LVSALLEAPTSPGRMVTAVELCAQMG-RLWTRGRQLIDFMRLVHVLFD 120 (172)
T ss_pred HHHHHHcCCCCCcchhHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHh
Confidence 34445666666654 78999996322 244 35677 677777774
No 426
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=32.68 E-value=8.8e+02 Score=28.52 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=55.8
Q ss_pred cCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeC
Q 000673 568 GHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGE 647 (1358)
Q Consensus 568 gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~ 647 (1358)
+-.+.+..+... +|| .+++.++.-....-||--...-...-..-...|..+.|.|+ +...+. ..
T Consensus 142 ~~~gs~~~~~r~-----~dG----~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~------~~lw~~-~~ 205 (302)
T PF14870_consen 142 ETSGSINDITRS-----SDG----RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD------GNLWML-AR 205 (302)
T ss_dssp S----EEEEEE------TTS-----EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT------S-EEEE-ET
T ss_pred CCcceeEeEEEC-----CCC----cEEEEECcccEEEEecCCCccceEEccCccceehhceecCC------CCEEEE-eC
Confidence 344678887765 788 78877776666678875322122222234578999999999 666554 48
Q ss_pred CCcEEEEE-CCCCcEEEE--ecC--CCCCcEEEEEcCCCCEEEEEe
Q 000673 648 DFSVALAS-LETLRVERM--FPG--HPNYPAKVVWDCPRGYIACLC 688 (1358)
Q Consensus 648 D~tV~lwd-l~~~~~~~~--l~g--H~~~V~~v~~spd~~~L~~g~ 688 (1358)
.+.|+.=+ ....+.... .+. -...+..++|.+++...++|+
T Consensus 206 Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 206 GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG 251 (302)
T ss_dssp TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES
T ss_pred CcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC
Confidence 88888887 233332222 111 122368999999988888543
No 427
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.36 E-value=2.1e+02 Score=31.92 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEE
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLIT 615 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~ 615 (1358)
++|+.-..+|.+++||+.+++++.
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeecc
Confidence 789999999999999999988644
No 428
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=32.27 E-value=1.4e+02 Score=22.98 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=22.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEec
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNLITVMHH 619 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~l~~~~~ 619 (1358)
.++++.-.+++|.++|..+++.+..+..
T Consensus 5 ~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 5 KLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4566666789999999999988887765
No 429
>PTZ00429 beta-adaptin; Provisional
Probab=30.60 E-value=7.1e+02 Score=33.17 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=37.6
Q ss_pred HHHHHhhcCCCcChhHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Q 000673 1126 AAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLA 1169 (1358)
Q Consensus 1126 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~aiel~~ 1169 (1358)
++.+....+....|+++.++.+.|.+=+.++|.-+|..|+--++
T Consensus 87 LvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs 130 (746)
T PTZ00429 87 LVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMM 130 (746)
T ss_pred HHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34455666778899999999999999999999999999998777
No 430
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=30.44 E-value=31 Score=29.00 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Q 000673 1121 SHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAE 1170 (1358)
Q Consensus 1121 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~aiel~~~ 1170 (1358)
.++-.+|.++...+..+.+ ....+...|..+|.+++..+|..|+..||+
T Consensus 6 ~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 6 AAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 3455666655555556665 566677888888888888999999988763
No 431
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=29.37 E-value=86 Score=26.21 Aligned_cols=45 Identities=11% Similarity=0.264 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcChhHHHHhHHHHHHHhhhhcCCCChHhHHhh
Q 000673 1254 HLVSIMTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTC 1298 (1358)
Q Consensus 1254 ~~~~l~~l~~li~~~p~~~~~~l~~~~~~v~~~lDp~~~~~r~~~ 1298 (1358)
...++..|-++.+..|..+.++++.++..++..|.=.++..|.+.
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A 48 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAA 48 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 345555555578899999999999999999999953333446544
No 432
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=28.92 E-value=1.9e+02 Score=28.83 Aligned_cols=71 Identities=11% Similarity=0.185 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhcChh---HHHHhHHHHHHHhhhhcC----CCChHhHHhhHHHHH
Q 000673 1233 ILGFLTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPR---NVAQHLDKVVNFILQTMD----PGNSVMRKTCLHTSM 1303 (1358)
Q Consensus 1233 ~~~f~~~~~~~i~~~~~~~~~~~~~l~~l~~li~~~p~---~~~~~l~~~~~~v~~~lD----p~~~~~r~~~l~~~~ 1303 (1358)
+|.||..+.....+...+..-...+|.....|||+.|. .+..+-.+++..+++-=| |+.-..|..||-+..
T Consensus 1 ~PvYlrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~ 78 (114)
T PF10193_consen 1 RPVYLRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALV 78 (114)
T ss_dssp ----HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHH
Confidence 46788888877742221222344777777779999999 999999999999998655 555578887776543
No 433
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=27.79 E-value=60 Score=23.98 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=17.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHH
Q 000673 1006 LQLLVSFWQDESEHVRMAARSLF 1028 (1358)
Q Consensus 1006 l~~la~~w~d~~~~vr~aar~l~ 1028 (1358)
+..|.+.-+|++++||+||=.-|
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l 24 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECL 24 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHH
Confidence 45666777899999999986665
No 434
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=27.39 E-value=5.1e+02 Score=33.00 Aligned_cols=163 Identities=14% Similarity=0.142 Sum_probs=97.5
Q ss_pred cchhhHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhhHhhhccccc-cchhHhHHhHHhhh
Q 000673 1117 DAMTSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIG-FEIPRLIGDIFFQI 1195 (1358)
Q Consensus 1117 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~aiel~~~g~~~~w~~~~~-~~~~~~l~~~~~~~ 1195 (1358)
.-.++.|-++|-|+-.-|..+++.=-+.|+-.|+.+|.+-|..+|+.|.+-. ||. -.-|+ .|++..|.+=+..-
T Consensus 703 Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tf--G~I---s~aiGPqdvL~~LlnnLkvq 777 (975)
T COG5181 703 KVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETF--GCI---SRAIGPQDVLDILLNNLKVQ 777 (975)
T ss_pred HHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh--hhH---HhhcCHHHHHHHHHhcchHH
Confidence 3456778899999999999999999999999999999999999999999865 452 23344 46666665322111
Q ss_pred hhccCCCCCcCCCCCCchhHHHHHHhhhcccchhccChh-HHHHHHHHHHhhcCCCChHHHHHHHHHHH---HHhcChh-
Q 000673 1196 ECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADIL-GFLTVVESQIWSTASDSPVHLVSIMTIIR---VVRGSPR- 1270 (1358)
Q Consensus 1196 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~ia~~~~~-~f~~~~~~~i~~~~~~~~~~~~~l~~l~~---li~~~p~- 1270 (1358)
-.|-.+|.+---++ +|..+.| ..+-+|-.+- ..+.-.+....|..+.. .|..+-.
T Consensus 778 -----------eRq~RvctsvaI~i-------Vae~cgpfsVlP~lm~dY--~TPe~nVQnGvLkam~fmFeyig~~s~d 837 (975)
T COG5181 778 -----------ERQQRVCTSVAISI-------VAEYCGPFSVLPTLMSDY--ETPEANVQNGVLKAMCFMFEYIGQASLD 837 (975)
T ss_pred -----------HHHhhhhhhhhhhh-------hHhhcCchhhHHHHHhcc--cCchhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 12334444422222 5655543 3344444433 23333344444443333 4444333
Q ss_pred HHHHhHHHHHHHhhhhcCCCChHhHHhhHHHHHHHHHHHHhc
Q 000673 1271 NVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALKEIVHV 1312 (1358)
Q Consensus 1271 ~~~~~l~~~~~~v~~~lDp~~~~~r~~~l~~~~~~l~~~v~~ 1312 (1358)
.++..+|-+-|+.. -=||. -| +.|+++|++++-.
T Consensus 838 Yvy~itPlleDAlt-DrD~v---hR----qta~nvI~Hl~Ln 871 (975)
T COG5181 838 YVYSITPLLEDALT-DRDPV---HR----QTAMNVIRHLVLN 871 (975)
T ss_pred HHHHhhHHHHhhhc-ccchH---HH----HHHHHHHHHHhcC
Confidence 34445555555543 23333 33 5788888888755
No 435
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=26.85 E-value=7.8e+02 Score=31.11 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=91.8
Q ss_pred HHHHHhhcCCCcChhHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhhH---hhhccccccchhHhHHhHHhhhhhccCCC
Q 000673 1126 AAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGME---STWKTCIGFEIPRLIGDIFFQIECVSNSS 1202 (1358)
Q Consensus 1126 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~aiel~~~g~~---~~w~~~~~~~~~~~l~~~~~~~~~~~~~~ 1202 (1358)
+-.|.-.....-...+....-..|...|..++..+|..|+-.+++=-+ ..=+...+.+++.++.. |...
T Consensus 59 ~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~------~L~~-- 130 (503)
T PF10508_consen 59 CDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQ------CLRD-- 130 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHH------HHcC--
Confidence 334444444444445577788888888988888999998887766331 11222333456555553 3222
Q ss_pred CCcCCCCCCchhHHHHHHhhhcccchhccChhHH--------HHHHHHHHhhcCCCChHHHHHHHHHHHHHhcChhHHHH
Q 000673 1203 ANLAGQHPAVPASIRETLVGILLPSLAMADILGF--------LTVVESQIWSTASDSPVHLVSIMTIIRVVRGSPRNVAQ 1274 (1358)
Q Consensus 1203 ~~~~~~~~~~~~~~~~a~~~~~l~~ia~~~~~~f--------~~~~~~~i~~~~~~~~~~~~~l~~l~~li~~~p~~~~~ 1274 (1358)
++..++..|-.+| ..||...+ .+ +..|..-+ .+.++-.....+-.++.+.+..|..+.
T Consensus 131 -----~d~~Va~~A~~~L-----~~l~~~~~-~~~~l~~~~~~~~L~~l~--~~~~~~vR~Rv~el~v~i~~~S~~~~~- 196 (503)
T PF10508_consen 131 -----PDLSVAKAAIKAL-----KKLASHPE-GLEQLFDSNLLSKLKSLM--SQSSDIVRCRVYELLVEIASHSPEAAE- 196 (503)
T ss_pred -----CcHHHHHHHHHHH-----HHHhCCch-hHHHHhCcchHHHHHHHH--hccCHHHHHHHHHHHHHHHhcCHHHHH-
Confidence 3345566666666 44665433 32 34444433 122233333444444556677776663
Q ss_pred hHHH--HHHHhhhhcCCCChHhHHhhHHHHHHHHHHHHh
Q 000673 1275 HLDK--VVNFILQTMDPGNSVMRKTCLHTSMAALKEIVH 1311 (1358)
Q Consensus 1275 ~l~~--~~~~v~~~lDp~~~~~r~~~l~~~~~~l~~~v~ 1311 (1358)
+... +++.+++.||-.+.-.|..|+ ++|.+|++
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnal----ell~~La~ 231 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNAL----ELLSELAE 231 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHH----HHHHHHHc
Confidence 4443 899999999998886666554 45555554
No 436
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.58 E-value=1.9e+02 Score=39.18 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=71.5
Q ss_pred CCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCCCCcE-EEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCC
Q 000673 570 TGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLGSGNL-ITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGED 648 (1358)
Q Consensus 570 ~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~sg~~-l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D 648 (1358)
...+.|+.|.|.. | ...+....|+.|++..+..-.. ..++ --+..++|++|+|. |..++.|-..
T Consensus 155 ~vf~~~~~wnP~v--p------~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSpr------GKQl~iG~nn 219 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLV--P------LNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPR------GKQLFIGRNN 219 (1405)
T ss_pred ccccccccccCCc--c------chhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccc------cceeeEecCC
Confidence 4567788898643 2 3466677899998887653221 2222 23467899999999 8999999999
Q ss_pred CcEEEEECCCCcEEEEecCC----CCCcEEEEEcCCCCEEEEEe
Q 000673 649 FSVALASLETLRVERMFPGH----PNYPAKVVWDCPRGYIACLC 688 (1358)
Q Consensus 649 ~tV~lwdl~~~~~~~~l~gH----~~~V~~v~~spd~~~L~~g~ 688 (1358)
|++.-|-.. ++....+++- ..+|.+|+|-....++++-+
T Consensus 220 Gt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 220 GTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 999988654 4443444332 35789999998888888643
No 437
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=25.75 E-value=3.4e+02 Score=34.15 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=32.1
Q ss_pred ChhHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhhH
Q 000673 1138 KPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGME 1173 (1358)
Q Consensus 1138 ~~~~~~~~~~~l~~ll~~~~~~~~~~aiel~~~g~~ 1173 (1358)
.+.++..+...|..+|.+++..+|+.|+..+.+=|.
T Consensus 108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~ 143 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYR 143 (526)
T ss_dssp SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 788899999999999999999999999998887773
No 438
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=25.65 E-value=5.4e+02 Score=33.39 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=55.3
Q ss_pred cccCCceEE--EEEecCCCCEEEEEEeccccCCCCCccCcEEEEEeCCCcEEEEeCC---------CCcEEEE--EecCC
Q 000673 555 LKVNSHVSR--QYFLGHTGAVLCLAAHRMVGTAKGWSFNEVLVSGSMDCSIRIWDLG---------SGNLITV--MHHHV 621 (1358)
Q Consensus 555 ~d~~t~~~~--~~l~gH~~~V~~l~~sp~~~~~dg~~~~~~L~Sgs~D~tI~lWDl~---------sg~~l~~--~~~H~ 621 (1358)
||...+... ..| ...+.|.++.|.. .||| +.+++-|-...|.++--. +...++. +..|+
T Consensus 56 WD~~~~~lE~~~~f-~~~~~I~dLDWts---t~d~----qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T 127 (631)
T PF12234_consen 56 WDTRSGVLEYEESF-SEDDPIRDLDWTS---TPDG----QSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHT 127 (631)
T ss_pred EEcCCcEEEEeeee-cCCCceeeceeee---cCCC----CEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCC
Confidence 555544422 233 4578999999964 4788 888888899999998542 1123333 33455
Q ss_pred -CcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEE
Q 000673 622 -APVRQIILSPPQTEHPWSDCFLSVGEDFSVALAS 655 (1358)
Q Consensus 622 -~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwd 655 (1358)
.+|.+..|.++ |..++..+ +.+.++|
T Consensus 128 ~h~Igds~Wl~~------G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 128 PHPIGDSIWLKD------GTLVVGSG--NQLFVFD 154 (631)
T ss_pred CCCccceeEecC------CeEEEEeC--CEEEEEC
Confidence 68889999888 65555443 4577765
No 439
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.18 E-value=1.5e+02 Score=40.14 Aligned_cols=101 Identities=16% Similarity=0.094 Sum_probs=63.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCcE-----EEEEec------CCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCc
Q 000673 592 EVLVSGSMDCSIRIWDLGSGNL-----ITVMHH------HVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLR 660 (1358)
Q Consensus 592 ~~L~Sgs~D~tI~lWDl~sg~~-----l~~~~~------H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~ 660 (1358)
..++..+.+-.|..+|+++-.. ..-|+. ...-+.++.|.|.- -...+....|+.|++..+.-..
T Consensus 115 s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-----p~n~av~l~dlsl~V~~~~~~~ 189 (1405)
T KOG3630|consen 115 SVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-----PLNSAVDLSDLSLRVKSTKQLA 189 (1405)
T ss_pred EEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-----cchhhhhccccchhhhhhhhhh
Confidence 4555666677899999975321 111222 23445677888762 2356677789999888765332
Q ss_pred -EEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEEC
Q 000673 661 -VERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDV 706 (1358)
Q Consensus 661 -~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~ 706 (1358)
.+..++ -....++++|+|.|+.++.|-.. |++.-|..
T Consensus 190 ~~v~s~p-~t~~~Tav~WSprGKQl~iG~nn--------Gt~vQy~P 227 (1405)
T KOG3630|consen 190 QNVTSFP-VTNSQTAVLWSPRGKQLFIGRNN--------GTEVQYEP 227 (1405)
T ss_pred hhhcccC-cccceeeEEeccccceeeEecCC--------CeEEEeec
Confidence 223333 23467899999999999865433 77776654
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=24.45 E-value=6.1e+02 Score=30.46 Aligned_cols=57 Identities=9% Similarity=0.032 Sum_probs=37.6
Q ss_pred CcEEEEEeCCCCCCCCCCCeEEEEeCC-------------------CcEEEEECCCCcEEEEecCCCCCcEEEEEcCCCC
Q 000673 622 APVRQIILSPPQTEHPWSDCFLSVGED-------------------FSVALASLETLRVERMFPGHPNYPAKVVWDCPRG 682 (1358)
Q Consensus 622 ~~V~~l~~spd~~~~~~g~~l~S~s~D-------------------~tV~lwdl~~~~~~~~l~gH~~~V~~v~~spd~~ 682 (1358)
.....+.|.|| |.+.++.+.. +.|.-+|.++++......++. .+..++|+|+|+
T Consensus 124 ~~~~~l~~gpD------G~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r-np~Gl~~d~~G~ 196 (367)
T TIGR02604 124 HSLNSLAWGPD------GWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ-NPYGHSVDSWGD 196 (367)
T ss_pred ccccCceECCC------CCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcC-CCccceECCCCC
Confidence 45778999999 7766655421 446666666655544444543 456899999988
Q ss_pred EEE
Q 000673 683 YIA 685 (1358)
Q Consensus 683 ~L~ 685 (1358)
+++
T Consensus 197 l~~ 199 (367)
T TIGR02604 197 VFF 199 (367)
T ss_pred EEE
Confidence 876
No 441
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=23.63 E-value=1.4e+03 Score=27.95 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=45.6
Q ss_pred CCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCC-CCCcEEEEEcCCCCEEE
Q 000673 621 VAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH-PNYPAKVVWDCPRGYIA 685 (1358)
Q Consensus 621 ~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH-~~~V~~v~~spd~~~L~ 685 (1358)
.+++..+++||+ |+++|.-..+|.+.+.+.+-.+.+..+.-. ...+..+.|..++..++
T Consensus 216 ~~~i~~iavSpn------g~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 216 DGPIIKIAVSPN------GKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred CCCeEEEEECCC------CCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE
Confidence 468999999999 899999999999999987766666666544 34667888976654443
No 442
>PHA03098 kelch-like protein; Provisional
Probab=23.62 E-value=6.6e+02 Score=31.76 Aligned_cols=106 Identities=9% Similarity=0.019 Sum_probs=51.6
Q ss_pred cEEEEEeCC------CcEEEEeCCCCcEEEE--EecCCCcEEEEEeCCCCCCCCCCCeEEEEeCC--------CcEEEEE
Q 000673 592 EVLVSGSMD------CSIRIWDLGSGNLITV--MHHHVAPVRQIILSPPQTEHPWSDCFLSVGED--------FSVALAS 655 (1358)
Q Consensus 592 ~~L~Sgs~D------~tI~lWDl~sg~~l~~--~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D--------~tV~lwd 655 (1358)
.+.+.||.+ ..+..||..+++-... +.........+.. + +..++.|+.+ ..+..||
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~v~~yd 462 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--D------GKIYVIGGISYIDNIKVYNIVESYN 462 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--C------CEEEEECCccCCCCCcccceEEEec
Confidence 677777742 3578888876543221 1111111111111 2 4556666543 2378899
Q ss_pred CCCCcEEEE--ecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEEECCCCe
Q 000673 656 LETLRVERM--FPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIWDVKTGA 710 (1358)
Q Consensus 656 l~~~~~~~~--l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vWd~~tg~ 710 (1358)
+++++-... ++........+.+ ++..++.|+.+ +.. ..+.|.++|.++.+
T Consensus 463 ~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~--~~~-~~~~v~~yd~~~~~ 514 (534)
T PHA03098 463 PVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK--YEY-YINEIEVYDDKTNT 514 (534)
T ss_pred CCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc--CCc-ccceeEEEeCCCCE
Confidence 887654322 1111111122233 56666666543 111 12578899988754
No 443
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=23.05 E-value=4.9e+02 Score=28.62 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhhHhhhccc
Q 000673 1121 SHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTC 1179 (1358)
Q Consensus 1121 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~aiel~~~g~~~~w~~~ 1179 (1358)
.++.+++.++......+.+- +..+...|++.+.+.+..++..|.+.+. ++|+.+
T Consensus 72 ~A~~~l~~l~~~l~~~~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~----~i~~~~ 125 (228)
T PF12348_consen 72 TACQLLSDLARQLGSHFEPY-ADILLPPLLKKLGDSKKFIREAANNALD----AIIESC 125 (228)
T ss_dssp HHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGG---HHHHHHHHHHHH----HHHTTS
T ss_pred HHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHccccHHHHHHHHHHHH----HHHHHC
Confidence 56677788888887777776 6677788999998888888888888877 456655
No 444
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=22.79 E-value=1.6e+02 Score=22.70 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=14.6
Q ss_pred CCCCcEEEEEcCCCCEEEEEe
Q 000673 668 HPNYPAKVVWDCPRGYIACLC 688 (1358)
Q Consensus 668 H~~~V~~v~~spd~~~L~~g~ 688 (1358)
....-....|+|||++|+-.+
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEE
T ss_pred CCccccCEEEecCCCEEEEEe
Confidence 334556889999999998543
No 445
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=22.29 E-value=3.9e+02 Score=33.60 Aligned_cols=135 Identities=14% Similarity=0.155 Sum_probs=77.8
Q ss_pred HHHHHHhhcCCCcChhHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhhHhhhccccccchhHhHHhHHhhhhhccCCCCC
Q 000673 1125 VAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVSNSSAN 1204 (1358)
Q Consensus 1125 v~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~aiel~~~g~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1204 (1358)
=+|.++......-+++++.++.+.|.+=|..++...|..|+-.++. +. +.|+...+....... ...
T Consensus 60 rl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~-i~-------~~~~~~~l~~~v~~l--l~~---- 125 (526)
T PF01602_consen 60 RLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSN-IR-------TPEMAEPLIPDVIKL--LSD---- 125 (526)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHH-H--------SHHHHHHHHHHHHHH--HHS----
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhh-hc-------ccchhhHHHHHHHHH--hcC----
Confidence 4566666766777888999999999999998999999999999985 31 123444443222222 112
Q ss_pred cCCCCCCchhHHHHHHhhhcccchhccChhH----HHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHhcChhHHHHhHHHH
Q 000673 1205 LAGQHPAVPASIRETLVGILLPSLAMADILG----FLTVVESQIWSTASDSP-VHLVSIMTIIRVVRGSPRNVAQHLDKV 1279 (1358)
Q Consensus 1205 ~~~~~~~~~~~~~~a~~~~~l~~ia~~~~~~----f~~~~~~~i~~~~~~~~-~~~~~l~~l~~li~~~p~~~~~~l~~~ 1279 (1358)
+.+-+.+.|-.|+ ..+...+|.. |+..+..-+ ....+ +...++..+..+ +..|......++.+
T Consensus 126 ---~~~~VRk~A~~~l-----~~i~~~~p~~~~~~~~~~l~~lL---~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~ 193 (526)
T PF01602_consen 126 ---PSPYVRKKAALAL-----LKIYRKDPDLVEDELIPKLKQLL---SDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKL 193 (526)
T ss_dssp ---SSHHHHHHHHHHH-----HHHHHHCHCCHHGGHHHHHHHHT---THSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHH
T ss_pred ---CchHHHHHHHHHH-----HHHhccCHHHHHHHHHHHHhhhc---cCCcchhHHHHHHHHHHH-ccCcchhhhhHHHH
Confidence 1223445544455 4566666655 455555555 22223 333444333334 55565533455555
Q ss_pred HHHhhh
Q 000673 1280 VNFILQ 1285 (1358)
Q Consensus 1280 ~~~v~~ 1285 (1358)
++.+.+
T Consensus 194 ~~~L~~ 199 (526)
T PF01602_consen 194 IRILCQ 199 (526)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 555443
No 446
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.17 E-value=3.7e+02 Score=31.29 Aligned_cols=82 Identities=11% Similarity=0.174 Sum_probs=61.4
Q ss_pred ecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecCC-CCCcEEEEEcCCCCEEEEEecCCccccC
Q 000673 618 HHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPGH-PNYPAKVVWDCPRGYIACLCRDHSRTSD 696 (1358)
Q Consensus 618 ~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~gH-~~~V~~v~~spd~~~L~~g~~d~sgssD 696 (1358)
.+-...|.++.|+|+ .+.+.+......-.+|=...|+.+++++-. -.....|.+..+++|.++ ..
T Consensus 82 ~g~~~nvS~LTynp~------~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~--------dE 147 (316)
T COG3204 82 LGETANVSSLTYNPD------TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIV--------DE 147 (316)
T ss_pred ccccccccceeeCCC------cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEE--------eh
Confidence 344555999999999 788888888888888888889999887632 124568899989999883 44
Q ss_pred CCCeEEEEECCCCeEEE
Q 000673 697 AVDVLFIWDVKTGARER 713 (1358)
Q Consensus 697 ~DgtV~vWd~~tg~~~~ 713 (1358)
+|+.+++..+..+..+.
T Consensus 148 R~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 148 RDRALYLFTVDADTTVI 164 (316)
T ss_pred hcceEEEEEEcCCccEE
Confidence 46889888877654433
No 447
>PTZ00429 beta-adaptin; Provisional
Probab=21.92 E-value=2e+03 Score=29.09 Aligned_cols=147 Identities=15% Similarity=0.124 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhhHhhhccccccchhHhHHhHHhhhhhcc
Q 000673 1120 TSHIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEKYSSTAAELLAEGMESTWKTCIGFEIPRLIGDIFFQIECVS 1199 (1358)
Q Consensus 1120 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~aiel~~~g~~~~w~~~~~~~~~~~l~~~~~~~~~~~ 1199 (1358)
++++.++--|.-..|..+ .+.+.....|...|.+.++-.+..-+|++.+ +.|--+.|...++..+.-.+.
T Consensus 197 ~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~-----y~P~~~~e~~~il~~l~~~Lq--- 266 (746)
T PTZ00429 197 SNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAA-----QRPSDKESAETLLTRVLPRMS--- 266 (746)
T ss_pred HHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHh-----cCCCCcHHHHHHHHHHHHHhc---
Confidence 344444444543333322 3456666666666666677788888888854 334322333333332222211
Q ss_pred CCCCCcCCCCCCchhHHHHHHhhhcccchhccChhHHHHHHHHHHh----hcCCCCh-HHHHHHHHHHHHHhcChhHHHH
Q 000673 1200 NSSANLAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQIW----STASDSP-VHLVSIMTIIRVVRGSPRNVAQ 1274 (1358)
Q Consensus 1200 ~~~~~~~~~~~~~~~~~~~a~~~~~l~~ia~~~~~~f~~~~~~~i~----~~~~~~~-~~~~~l~~l~~li~~~p~~~~~ 1274 (1358)
. .| +.+.-.|-.++ +.++....+..+..+...+. ...+..+ ....+|..|..++.++|..+..
T Consensus 267 ~--~N-----~AVVl~Aik~i-----l~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~ 334 (746)
T PTZ00429 267 H--QN-----PAVVMGAIKVV-----ANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRT 334 (746)
T ss_pred C--CC-----HHHHHHHHHHH-----HHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHH
Confidence 1 11 23333333444 23333322345555443332 2222333 3446665555588999998887
Q ss_pred hHHHHHHHhhhhcCCCC
Q 000673 1275 HLDKVVNFILQTMDPGN 1291 (1358)
Q Consensus 1275 ~l~~~~~~v~~~lDp~~ 1291 (1358)
++.. +.++.=||..
T Consensus 335 ~~~~---Ff~~~~Dp~y 348 (746)
T PTZ00429 335 NLDS---FYVRYSDPPF 348 (746)
T ss_pred HHHh---hhcccCCcHH
Confidence 6432 3345456553
No 448
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=21.82 E-value=3.9e+02 Score=29.74 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=43.1
Q ss_pred CeEEEEeCCCcEEEEECC--CCcEEEEecCCCCCcEEEEEcCCCCEEEEEecCCccccCCCCeEEEE
Q 000673 640 DCFLSVGEDFSVALASLE--TLRVERMFPGHPNYPAKVVWDCPRGYIACLCRDHSRTSDAVDVLFIW 704 (1358)
Q Consensus 640 ~~l~S~s~D~tV~lwdl~--~~~~~~~l~gH~~~V~~v~~spd~~~L~~g~~d~sgssD~DgtV~vW 704 (1358)
+.+..+...+.|.+|++. ..+.+..|+.- +.|..+.++..|+||++--....++. +..+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~--~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSP--VDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCcc--ceEEEEE
Confidence 344333566789999988 44567778765 68999999999999998776622221 1366764
No 449
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.54 E-value=3.3e+02 Score=35.63 Aligned_cols=113 Identities=18% Similarity=0.310 Sum_probs=71.5
Q ss_pred ccchhHhHHhHHhhhhhccCCCCCcCCCCCCchhHHHHHHhhhcccchhccCh--hHHHHHHHHHHhhcCCCChHHHHHH
Q 000673 1181 GFEIPRLIGDIFFQIECVSNSSANLAGQHPAVPASIRETLVGILLPSLAMADI--LGFLTVVESQIWSTASDSPVHLVSI 1258 (1358)
Q Consensus 1181 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~ia~~~~--~~f~~~~~~~i~~~~~~~~~~~~~l 1258 (1358)
|.+...+|.|++.|+. ....+..|+|. + +=--|-+++ ..|=...+ .+-+..|++.. .+++......+|
T Consensus 265 d~daSd~M~DiLaqva-tntdsskN~Gn-A-ILYE~V~TI-----~~I~~~~~LrvlainiLgkFL--~n~d~NirYvaL 334 (866)
T KOG1062|consen 265 DADASDLMNDILAQVA-TNTDSSKNAGN-A-ILYECVRTI-----MDIRSNSGLRVLAINILGKFL--LNRDNNIRYVAL 334 (866)
T ss_pred CccHHHHHHHHHHHHH-hcccccccchh-H-HHHHHHHHH-----HhccCCchHHHHHHHHHHHHh--cCCccceeeeeh
Confidence 3567777788888873 33333334443 1 111122233 11211111 24567788877 456666666899
Q ss_pred HHHHHHHhcChhHHHHhHHHHHHHhhhhcCCCChHhHHhhHHHHHHHHH
Q 000673 1259 MTIIRVVRGSPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSMAALK 1307 (1358)
Q Consensus 1259 ~~l~~li~~~p~~~~~~l~~~~~~v~~~lDp~~~~~r~~~l~~~~~~l~ 1307 (1358)
-.|.++|+..|..+.+|=..| +.||+=.+..+|++-|..++.+++
T Consensus 335 n~L~r~V~~d~~avqrHr~tI----leCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 335 NMLLRVVQQDPTAVQRHRSTI----LECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred hhHHhhhcCCcHHHHHHHHHH----HHHhcCCcHHHHHHHHHHHHHHhc
Confidence 999999999999999997765 567777777788888888777654
No 450
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.68 E-value=1.6e+03 Score=29.77 Aligned_cols=184 Identities=13% Similarity=0.158 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhcCCCcChhHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHhhHhhhccccc-c-------chhHhH-Hh
Q 000673 1122 HIIVAAALAIWYPSLVKPTLAMLVVQPLIKLVMATNEK--YSSTAAELLAEGMESTWKTCIG-F-------EIPRLI-GD 1190 (1358)
Q Consensus 1122 ~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--~~~~aiel~~~g~~~~w~~~~~-~-------~~~~~l-~~ 1190 (1358)
+||++++=+-|+ +-+++-...++.+|+.||..+... ..-.+|--++.-=.++|+||+. + ....++ .+
T Consensus 302 sVVmA~aql~y~--lAP~~~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKle 379 (968)
T KOG1060|consen 302 SVVMAVAQLFYH--LAPKNQVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLE 379 (968)
T ss_pred HHHHHHHhHHHh--hCCHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHH
Confidence 556655544443 556667888999999999766553 2222333333222368999986 1 223333 24
Q ss_pred HHhhhhhccCCCCC-------cCCCCCCchhHHHHHHhhhcccchhccChhHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 000673 1191 IFFQIECVSNSSAN-------LAGQHPAVPASIRETLVGILLPSLAMADILGFLTVVESQIWSTASDSPVHLVSIMTIIR 1263 (1358)
Q Consensus 1191 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~~l~~ia~~~~~~f~~~~~~~i~~~~~~~~~~~~~l~~l~~ 1263 (1358)
+++.+.-.++.+.- -..++-..+.++.+|+-+ +-..|. .=+.--+++|-.-+.+. +..+-..+.+.|-+
T Consensus 380 iLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGr-CA~~~~-sv~~tCL~gLv~Llssh--de~Vv~eaV~vIk~ 455 (968)
T KOG1060|consen 380 ILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGR-CASRIG-SVTDTCLNGLVQLLSSH--DELVVAEAVVVIKR 455 (968)
T ss_pred HHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHhhC-chhhHHHHHHHHHHhcc--cchhHHHHHHHHHH
Confidence 44443211110000 011222355555555522 000111 11223344444444222 22232344454445
Q ss_pred HHhcChhHHHHhHHHHHHHhhhhcCCCChHh-H-----------HhhHHHHHHHHHHHHhccce
Q 000673 1264 VVRGSPRNVAQHLDKVVNFILQTMDPGNSVM-R-----------KTCLHTSMAALKEIVHVFPM 1315 (1358)
Q Consensus 1264 li~~~p~~~~~~l~~~~~~v~~~lDp~~~~~-r-----------~~~l~~~~~~l~~~v~~~p~ 1315 (1358)
||++.|..-..+|-.++... |--...+ | .....-+..+|+.|++.|-.
T Consensus 456 Llq~~p~~h~~ii~~La~ll----dti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~ 515 (968)
T KOG1060|consen 456 LLQKDPAEHLEILFQLARLL----DTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSD 515 (968)
T ss_pred HHhhChHHHHHHHHHHHHHh----hhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhcc
Confidence 89999987655555544433 2221111 1 22346678888999988864
No 451
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=20.50 E-value=1.5e+02 Score=37.92 Aligned_cols=71 Identities=21% Similarity=0.384 Sum_probs=49.0
Q ss_pred eeEEEEEecCCCEEEEEeCCCcEEEEEccCCCCCccceeEeeeCcCcCEEEeeeccccccccCcccccccccccCccccc
Q 000673 18 RVTATSALTQPPTLYTGGSDGSILWWSFSDSSYSEIKPVAMLCGHSAPIADLSICYPAMVSRDGKAEHWKAENSSNVMGK 97 (1358)
Q Consensus 18 ~Vtava~Spdg~~LaTGs~DG~I~lWdl~~~~~~~~~~~~~L~GH~~~Vt~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1358)
.++++.-.|.|+-++.|.+||.|++++..+ +....++.-..|-..+.|+..
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~------r~qski~~~~~p~~nlv~tnh----------------------- 66 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIP------RRQSKICEEAKPKENLVFTNH----------------------- 66 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecc------cchhhhhhhcCCccceeeecc-----------------------
Confidence 477888889999999999999999999985 111223434444555545332
Q ss_pred ccCCCCeEEEeeCCCeEEEEECCCCce
Q 000673 98 SSLDNGALISACTDGVLCVWSRSSGHC 124 (1358)
Q Consensus 98 ~s~d~~~L~S~s~Dg~l~lWdl~~G~c 124 (1358)
-|+++..|+..--|.- +|-.
T Consensus 67 ------gl~~~tsdrr~la~~~-dgvv 86 (1636)
T KOG3616|consen 67 ------GLVTATSDRRALAWKE-DGVV 86 (1636)
T ss_pred ------ceEEEeccchhheeec-cCcc
Confidence 2777777888877855 4543
No 452
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=20.22 E-value=1.4e+02 Score=38.97 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=48.0
Q ss_pred EeCCCCcEEEEEecCCCcEEEEEeCCCCCCCCCCCeEEEEeCCCcEEEEECCCCcEEEEecC---CCCCcEEEEEcCCCC
Q 000673 606 WDLGSGNLITVMHHHVAPVRQIILSPPQTEHPWSDCFLSVGEDFSVALASLETLRVERMFPG---HPNYPAKVVWDCPRG 682 (1358)
Q Consensus 606 WDl~sg~~l~~~~~H~~~V~~l~~spd~~~~~~g~~l~S~s~D~tV~lwdl~~~~~~~~l~g---H~~~V~~v~~spd~~ 682 (1358)
||.. +-..+..-..+|++++|..| ++-++.||.|.++...+......+.. |...|+++....+|-
T Consensus 614 wd~e---p~~~~~~g~lPvrsla~~ed---------~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gV 681 (925)
T KOG3522|consen 614 WDGE---PNISIPTGSLPVRSLAFQED---------FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGV 681 (925)
T ss_pred CCCC---CccccccCCccccchhhhhc---------eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCce
Confidence 6654 22333344678999988765 67788899999999987665555443 345788998887777
Q ss_pred EEE
Q 000673 683 YIA 685 (1358)
Q Consensus 683 ~L~ 685 (1358)
+++
T Consensus 682 wva 684 (925)
T KOG3522|consen 682 WVA 684 (925)
T ss_pred EEE
Confidence 776
No 453
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=20.18 E-value=3.4e+02 Score=29.45 Aligned_cols=56 Identities=7% Similarity=0.147 Sum_probs=45.3
Q ss_pred CCCChHHHHHHHHHHHHHhc-ChhHHHHhHHHHHHHhhhhcCCCChHhHHhhHHHHH
Q 000673 1248 ASDSPVHLVSIMTIIRVVRG-SPRNVAQHLDKVVNFILQTMDPGNSVMRKTCLHTSM 1303 (1358)
Q Consensus 1248 ~~~~~~~~~~l~~l~~li~~-~p~~~~~~l~~~~~~v~~~lDp~~~~~r~~~l~~~~ 1303 (1358)
....|....+..++..|++. .+.-+.+.||.+|--+-+.|+-.|+....+||+.-.
T Consensus 49 Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq 105 (183)
T PF10274_consen 49 ETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQ 105 (183)
T ss_pred ccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34567767788877777777 999999999999999999999999987776665443
Done!